Query 046865
Match_columns 369
No_of_seqs 334 out of 2693
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3E-55 6.4E-60 406.8 20.4 349 11-369 2-416 (454)
2 COG1252 Ndh NADH dehydrogenase 100.0 1.5E-50 3.3E-55 366.1 29.0 328 12-348 2-374 (405)
3 PRK05249 soluble pyridine nucl 100.0 1.5E-49 3.3E-54 379.5 23.8 349 10-369 2-415 (461)
4 TIGR01421 gluta_reduc_1 glutat 100.0 5.9E-50 1.3E-54 379.2 20.5 346 12-369 1-412 (450)
5 PLN02507 glutathione reductase 100.0 2.8E-49 6E-54 378.0 24.1 350 9-369 21-445 (499)
6 PRK06467 dihydrolipoamide dehy 100.0 2.7E-49 5.8E-54 376.8 22.7 346 12-369 3-417 (471)
7 PRK06116 glutathione reductase 100.0 2.9E-49 6.3E-54 376.0 22.7 345 12-369 3-412 (450)
8 PRK07846 mycothione reductase; 100.0 4E-49 8.6E-54 373.4 22.9 346 13-369 1-407 (451)
9 TIGR01424 gluta_reduc_2 glutat 100.0 3.5E-49 7.5E-54 374.4 22.0 345 13-369 2-408 (446)
10 TIGR01423 trypano_reduc trypan 100.0 3.6E-49 7.7E-54 374.9 21.1 349 12-369 2-433 (486)
11 TIGR03452 mycothione_red mycot 100.0 2E-48 4.3E-53 369.0 24.1 343 13-369 2-410 (452)
12 PRK08010 pyridine nucleotide-d 100.0 1.6E-48 3.4E-53 370.1 22.4 345 13-369 3-399 (441)
13 PTZ00318 NADH dehydrogenase-li 100.0 5.9E-47 1.3E-51 356.6 30.9 326 12-347 9-390 (424)
14 PRK13512 coenzyme A disulfide 100.0 1.4E-47 3E-52 362.4 26.6 340 14-368 2-390 (438)
15 PRK06370 mercuric reductase; V 100.0 3.1E-48 6.8E-53 370.0 22.2 351 10-369 2-415 (463)
16 PRK14727 putative mercuric red 100.0 9.1E-48 2E-52 367.3 21.7 346 11-369 14-426 (479)
17 PLN02546 glutathione reductase 100.0 1.6E-47 3.5E-52 367.3 23.5 347 11-369 77-494 (558)
18 TIGR02053 MerA mercuric reduct 100.0 4.6E-48 9.9E-53 369.1 19.4 345 14-369 1-410 (463)
19 PRK07818 dihydrolipoamide dehy 100.0 2.1E-47 4.5E-52 364.4 23.6 345 13-369 4-418 (466)
20 PRK06416 dihydrolipoamide dehy 100.0 2E-47 4.4E-52 364.8 21.7 345 12-369 3-414 (462)
21 PRK06115 dihydrolipoamide dehy 100.0 4E-47 8.7E-52 361.7 23.4 345 13-369 3-418 (466)
22 PRK14694 putative mercuric red 100.0 3.2E-47 7E-52 363.1 22.0 346 9-369 2-415 (468)
23 PTZ00058 glutathione reductase 100.0 5.5E-47 1.2E-51 363.4 23.5 347 11-369 46-519 (561)
24 PRK13748 putative mercuric red 100.0 1.1E-46 2.5E-51 368.0 24.3 344 12-369 97-508 (561)
25 PRK07251 pyridine nucleotide-d 100.0 1.1E-46 2.3E-51 357.3 23.0 344 13-369 3-398 (438)
26 PRK07845 flavoprotein disulfid 100.0 7.6E-47 1.6E-51 359.8 19.6 344 14-369 2-418 (466)
27 PRK06292 dihydrolipoamide dehy 100.0 3.5E-46 7.6E-51 356.2 23.0 345 12-369 2-412 (460)
28 PTZ00153 lipoamide dehydrogena 100.0 5.4E-46 1.2E-50 360.8 20.9 286 77-369 249-612 (659)
29 PRK06327 dihydrolipoamide dehy 100.0 2E-45 4.4E-50 351.1 24.2 347 12-369 3-427 (475)
30 KOG1335 Dihydrolipoamide dehyd 100.0 2.8E-46 6E-51 323.9 15.8 346 12-369 38-457 (506)
31 PRK09564 coenzyme A disulfide 100.0 5.8E-45 1.3E-49 346.7 25.7 343 14-368 1-396 (444)
32 TIGR01438 TGR thioredoxin and 100.0 1.8E-45 3.9E-50 350.5 21.7 349 13-369 2-430 (484)
33 PRK05976 dihydrolipoamide dehy 100.0 2.7E-45 5.9E-50 350.4 22.3 345 12-369 3-424 (472)
34 PRK06912 acoL dihydrolipoamide 100.0 5.9E-45 1.3E-49 346.6 24.2 342 15-369 2-410 (458)
35 PTZ00052 thioredoxin reductase 100.0 7.1E-45 1.5E-49 348.0 23.2 345 13-369 5-440 (499)
36 TIGR01350 lipoamide_DH dihydro 100.0 4.4E-45 9.5E-50 349.0 21.2 349 13-369 1-413 (461)
37 TIGR03169 Nterm_to_SelD pyridi 100.0 9.5E-44 2E-48 329.9 29.2 326 15-354 1-358 (364)
38 PRK14989 nitrite reductase sub 100.0 1.7E-43 3.7E-48 353.5 26.5 342 13-367 3-376 (847)
39 KOG0405 Pyridine nucleotide-di 100.0 6.1E-43 1.3E-47 299.5 15.0 347 11-368 18-433 (478)
40 PRK09754 phenylpropionate diox 100.0 1.8E-41 3.9E-46 317.3 25.8 279 13-299 3-307 (396)
41 PRK04965 NADH:flavorubredoxin 100.0 2.3E-40 5.1E-45 308.1 26.8 337 13-368 2-364 (377)
42 KOG2495 NADH-dehydrogenase (ub 100.0 1.8E-39 3.9E-44 286.0 23.8 321 9-334 51-441 (491)
43 TIGR02374 nitri_red_nirB nitri 100.0 1.2E-38 2.6E-43 319.3 25.5 277 16-299 1-299 (785)
44 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.9E-38 6.2E-43 299.0 22.9 329 27-368 1-383 (427)
45 TIGR01292 TRX_reduct thioredox 100.0 5.1E-36 1.1E-40 271.1 22.0 274 14-301 1-299 (300)
46 KOG4716 Thioredoxin reductase 100.0 6.6E-37 1.4E-41 261.6 10.2 349 9-369 15-450 (503)
47 PRK10262 thioredoxin reductase 100.0 2.2E-34 4.7E-39 262.5 19.7 282 11-305 4-317 (321)
48 TIGR03143 AhpF_homolog putativ 100.0 1.2E-33 2.5E-38 274.1 23.0 280 12-305 3-311 (555)
49 KOG1336 Monodehydroascorbate/f 100.0 6.2E-33 1.3E-37 249.4 24.9 280 12-299 73-381 (478)
50 TIGR03140 AhpF alkyl hydropero 100.0 9.9E-34 2.1E-38 272.7 20.3 278 11-303 210-513 (515)
51 TIGR01316 gltA glutamate synth 100.0 2.1E-33 4.5E-38 266.0 20.9 274 10-301 130-448 (449)
52 COG1251 NirB NAD(P)H-nitrite r 100.0 3.3E-33 7.2E-38 262.1 19.0 281 13-300 3-305 (793)
53 PRK12831 putative oxidoreducta 100.0 1.8E-32 4E-37 259.9 22.7 279 10-304 137-462 (464)
54 PRK15317 alkyl hydroperoxide r 100.0 1.9E-32 4.1E-37 264.2 23.0 280 11-305 209-514 (517)
55 COG0492 TrxB Thioredoxin reduc 100.0 1.7E-32 3.6E-37 243.5 20.3 275 12-304 2-302 (305)
56 PRK09853 putative selenate red 100.0 8E-32 1.7E-36 268.2 25.4 272 11-303 537-842 (1019)
57 PRK12770 putative glutamate sy 100.0 4E-32 8.6E-37 250.3 20.4 281 10-304 15-351 (352)
58 PRK11749 dihydropyrimidine deh 100.0 7.1E-32 1.5E-36 256.9 22.6 278 10-305 137-454 (457)
59 PRK12810 gltD glutamate syntha 100.0 1.7E-30 3.7E-35 247.8 23.2 283 11-306 141-468 (471)
60 TIGR03315 Se_ygfK putative sel 100.0 2.7E-30 5.9E-35 258.5 24.3 270 11-302 535-839 (1012)
61 PRK12778 putative bifunctional 100.0 1.1E-30 2.3E-35 262.2 21.2 277 11-304 429-751 (752)
62 PRK12814 putative NADPH-depend 100.0 2.9E-30 6.3E-35 254.3 21.2 277 12-306 192-504 (652)
63 PRK12779 putative bifunctional 100.0 6.6E-30 1.4E-34 258.3 23.5 277 11-305 304-629 (944)
64 PRK12775 putative trifunctiona 100.0 2E-28 4.3E-33 249.8 22.4 279 12-306 429-758 (1006)
65 TIGR01318 gltD_gamma_fam gluta 100.0 5.1E-28 1.1E-32 230.0 21.7 272 12-302 140-465 (467)
66 TIGR01317 GOGAT_sm_gam glutama 100.0 6.1E-28 1.3E-32 230.3 21.7 282 12-306 142-482 (485)
67 PRK12769 putative oxidoreducta 100.0 8.8E-28 1.9E-32 237.7 22.2 273 12-304 326-653 (654)
68 PRK13984 putative oxidoreducta 100.0 1.3E-27 2.7E-32 235.2 21.2 279 11-304 281-603 (604)
69 COG0446 HcaD Uncharacterized N 100.0 1.5E-26 3.4E-31 218.5 24.5 281 16-300 1-309 (415)
70 KOG1346 Programmed cell death 100.0 1.9E-27 4E-32 209.0 16.4 293 4-300 169-518 (659)
71 PRK12809 putative oxidoreducta 99.9 1.9E-26 4E-31 227.3 21.8 275 12-305 309-637 (639)
72 TIGR01372 soxA sarcosine oxida 99.9 8.9E-26 1.9E-30 231.7 24.2 273 12-304 162-473 (985)
73 PRK12771 putative glutamate sy 99.9 2.3E-25 5E-30 217.2 22.7 277 11-306 135-447 (564)
74 PLN02852 ferredoxin-NADP+ redu 99.9 1.2E-24 2.6E-29 204.9 20.6 286 9-304 22-423 (491)
75 KOG0404 Thioredoxin reductase 99.9 4.7E-24 1E-28 173.0 15.8 278 13-303 8-319 (322)
76 KOG3851 Sulfide:quinone oxidor 99.9 4.7E-24 1E-28 181.7 15.7 289 11-307 37-365 (446)
77 COG3634 AhpF Alkyl hydroperoxi 99.9 9.5E-25 2.1E-29 188.0 7.8 276 10-301 208-513 (520)
78 PLN02172 flavin-containing mon 99.9 4.2E-23 9.1E-28 195.0 16.1 269 11-299 8-349 (461)
79 PRK06567 putative bifunctional 99.8 9.9E-19 2.2E-23 173.0 18.6 266 11-306 381-773 (1028)
80 PF00743 FMO-like: Flavin-bind 99.8 8E-19 1.7E-23 168.1 16.5 273 13-299 1-393 (531)
81 KOG2755 Oxidoreductase [Genera 99.8 1.2E-19 2.7E-24 150.8 9.4 253 15-278 1-322 (334)
82 PF07992 Pyr_redox_2: Pyridine 99.8 5.6E-21 1.2E-25 162.4 -0.2 170 15-279 1-200 (201)
83 COG3486 IucD Lysine/ornithine 99.8 5.5E-17 1.2E-21 144.1 21.2 291 10-306 2-414 (436)
84 COG0493 GltD NADPH-dependent g 99.8 3.9E-18 8.4E-23 159.3 13.7 281 10-303 120-452 (457)
85 PF13434 K_oxygenase: L-lysine 99.7 3.1E-17 6.7E-22 149.2 12.7 222 13-234 2-340 (341)
86 COG1148 HdrA Heterodisulfide r 99.7 3.7E-15 8.1E-20 134.5 19.7 199 99-303 298-545 (622)
87 PRK05329 anaerobic glycerol-3- 99.6 2.1E-14 4.5E-19 133.7 19.3 160 140-301 219-419 (422)
88 COG2072 TrkA Predicted flavopr 99.6 7.5E-15 1.6E-19 138.5 16.4 163 9-173 4-210 (443)
89 KOG0399 Glutamate synthase [Am 99.6 1E-15 2.2E-20 149.1 10.2 281 10-304 1782-2121(2142)
90 PF13738 Pyr_redox_3: Pyridine 99.6 8.5E-16 1.8E-20 130.7 5.7 154 17-172 1-201 (203)
91 KOG1399 Flavin-containing mono 99.6 3.2E-14 7E-19 132.5 12.6 217 11-244 4-278 (448)
92 PF00070 Pyr_redox: Pyridine n 99.5 5.2E-14 1.1E-18 100.5 9.4 80 138-219 1-80 (80)
93 KOG1800 Ferredoxin/adrenodoxin 99.5 2.7E-12 5.7E-17 113.0 16.6 279 11-303 18-407 (468)
94 PTZ00188 adrenodoxin reductase 99.5 2.2E-12 4.7E-17 120.3 16.6 138 12-156 38-217 (506)
95 COG2081 Predicted flavoprotein 99.5 2E-12 4.3E-17 115.6 15.1 65 170-234 100-166 (408)
96 PF03486 HI0933_like: HI0933-l 99.2 7.9E-11 1.7E-15 109.6 12.6 69 167-235 95-166 (409)
97 COG4529 Uncharacterized protei 99.2 1.6E-09 3.6E-14 99.5 19.0 159 13-171 1-231 (474)
98 PF01266 DAO: FAD dependent ox 99.1 2.1E-10 4.6E-15 106.1 8.0 70 163-235 133-203 (358)
99 PRK12842 putative succinate de 99.0 1.8E-10 3.8E-15 113.1 4.0 100 134-235 155-275 (574)
100 TIGR03378 glycerol3P_GlpB glyc 99.0 1.8E-08 3.9E-13 93.2 16.3 146 150-298 237-418 (419)
101 COG0579 Predicted dehydrogenas 99.0 2.1E-09 4.6E-14 99.3 10.0 65 180-245 154-220 (429)
102 TIGR00292 thiazole biosynthesi 99.0 9.8E-09 2.1E-13 89.8 13.0 121 180-302 101-253 (254)
103 TIGR01377 soxA_mon sarcosine o 99.0 5.7E-09 1.2E-13 97.6 12.0 55 179-234 145-199 (380)
104 PRK04176 ribulose-1,5-biphosph 99.0 1.6E-08 3.6E-13 88.6 13.9 123 179-303 104-255 (257)
105 TIGR01292 TRX_reduct thioredox 98.9 7.9E-09 1.7E-13 93.3 11.5 98 138-238 2-115 (300)
106 PRK10157 putative oxidoreducta 98.9 1E-08 2.2E-13 97.2 12.5 55 180-234 109-163 (428)
107 PRK11728 hydroxyglutarate oxid 98.9 7.3E-09 1.6E-13 97.3 11.3 57 178-235 148-204 (393)
108 COG0644 FixC Dehydrogenases (f 98.9 1.4E-08 3.1E-13 95.3 13.1 54 180-233 96-150 (396)
109 TIGR01373 soxB sarcosine oxida 98.9 1.8E-08 3.9E-13 95.2 13.5 54 180-234 184-239 (407)
110 PRK06847 hypothetical protein; 98.9 8.4E-09 1.8E-13 96.3 11.0 58 180-237 108-165 (375)
111 PRK10015 oxidoreductase; Provi 98.9 1.6E-08 3.5E-13 95.7 12.9 54 180-233 109-162 (429)
112 PTZ00383 malate:quinone oxidor 98.9 1.6E-08 3.5E-13 96.6 12.8 54 180-234 212-272 (497)
113 PRK08773 2-octaprenyl-3-methyl 98.9 1.2E-08 2.6E-13 95.9 11.7 57 180-236 114-170 (392)
114 PRK08163 salicylate hydroxylas 98.9 3.9E-08 8.5E-13 92.5 14.6 57 180-236 110-167 (396)
115 COG0654 UbiH 2-polyprenyl-6-me 98.8 3.1E-08 6.8E-13 92.8 11.8 55 180-234 105-161 (387)
116 PRK11259 solA N-methyltryptoph 98.8 3.8E-08 8.2E-13 91.9 12.0 55 179-234 149-203 (376)
117 TIGR03329 Phn_aa_oxid putative 98.8 1.4E-07 2.9E-12 90.5 15.7 65 166-234 172-236 (460)
118 PLN02463 lycopene beta cyclase 98.8 8.3E-08 1.8E-12 90.8 13.6 55 180-235 115-169 (447)
119 PRK08020 ubiF 2-octaprenyl-3-m 98.8 5.2E-08 1.1E-12 91.5 12.1 57 180-236 113-170 (391)
120 TIGR00275 flavoprotein, HI0933 98.8 6.1E-08 1.3E-12 91.0 12.4 72 161-234 86-159 (400)
121 PRK07333 2-octaprenyl-6-methox 98.8 2.6E-08 5.7E-13 93.9 9.9 57 180-236 112-168 (403)
122 PRK12409 D-amino acid dehydrog 98.8 9.2E-08 2E-12 90.4 13.5 55 180-234 198-257 (410)
123 PRK07608 ubiquinone biosynthes 98.8 7.1E-08 1.5E-12 90.5 12.6 55 180-235 112-167 (388)
124 PRK07364 2-octaprenyl-6-methox 98.8 4.6E-08 1E-12 92.6 11.4 57 180-236 122-182 (415)
125 PRK07190 hypothetical protein; 98.8 4.7E-08 1E-12 93.9 11.6 56 180-235 110-165 (487)
126 PRK05714 2-octaprenyl-3-methyl 98.8 5.7E-08 1.2E-12 91.7 11.9 57 180-236 113-169 (405)
127 KOG2820 FAD-dependent oxidored 98.8 7.3E-08 1.6E-12 84.3 11.4 191 11-235 5-212 (399)
128 PRK13977 myosin-cross-reactive 98.8 3.4E-07 7.4E-12 87.6 17.0 57 179-235 226-293 (576)
129 PRK09897 hypothetical protein; 98.8 5.3E-08 1.1E-12 93.7 11.2 36 13-48 1-39 (534)
130 TIGR03364 HpnW_proposed FAD de 98.8 9.8E-08 2.1E-12 88.8 12.4 51 179-234 145-196 (365)
131 PRK07843 3-ketosteroid-delta-1 98.7 3.5E-08 7.6E-13 96.5 9.4 102 134-237 158-272 (557)
132 PRK08013 oxidoreductase; Provi 98.7 1.2E-07 2.6E-12 89.3 12.7 56 180-235 112-168 (400)
133 PRK07494 2-octaprenyl-6-methox 98.7 1E-07 2.2E-12 89.5 12.0 55 180-235 112-167 (388)
134 PRK05257 malate:quinone oxidor 98.7 1.9E-07 4.1E-12 89.7 13.7 64 179-243 183-253 (494)
135 TIGR00136 gidA glucose-inhibit 98.7 3.4E-07 7.3E-12 88.4 14.8 48 256-306 347-394 (617)
136 PRK07588 hypothetical protein; 98.7 2.2E-07 4.7E-12 87.3 13.2 56 180-236 104-159 (391)
137 COG2509 Uncharacterized FAD-de 98.7 2.9E-07 6.3E-12 83.9 13.1 71 170-241 164-235 (486)
138 COG3075 GlpB Anaerobic glycero 98.7 2.2E-07 4.7E-12 81.1 11.7 152 148-302 230-417 (421)
139 PRK00711 D-amino acid dehydrog 98.7 3.7E-07 7.9E-12 86.5 14.2 55 180-235 202-257 (416)
140 PRK13339 malate:quinone oxidor 98.7 1.6E-07 3.6E-12 89.5 11.8 65 179-244 184-255 (497)
141 TIGR01320 mal_quin_oxido malat 98.7 2.2E-07 4.7E-12 89.1 12.4 57 179-235 178-240 (483)
142 PRK09126 hypothetical protein; 98.7 4.8E-07 1E-11 85.0 14.6 57 181-237 112-169 (392)
143 COG1233 Phytoene dehydrogenase 98.7 2.2E-07 4.7E-12 89.5 12.2 55 179-233 224-279 (487)
144 PRK09564 coenzyme A disulfide 98.7 1.3E-07 2.8E-12 90.3 10.6 102 137-238 1-118 (444)
145 PRK06134 putative FAD-binding 98.7 9.6E-09 2.1E-13 100.9 2.8 99 135-235 160-278 (581)
146 PRK06996 hypothetical protein; 98.7 1.6E-07 3.4E-12 88.4 10.7 54 180-233 116-172 (398)
147 PRK08849 2-octaprenyl-3-methyl 98.7 1.7E-07 3.7E-12 87.8 10.8 57 181-237 112-169 (384)
148 PRK12266 glpD glycerol-3-phosp 98.7 2.1E-07 4.6E-12 90.1 11.5 57 179-235 155-216 (508)
149 PRK11101 glpA sn-glycerol-3-ph 98.7 1.7E-07 3.8E-12 91.4 11.0 56 179-234 149-210 (546)
150 PRK11883 protoporphyrinogen ox 98.6 4.2E-07 9.2E-12 87.0 13.4 39 195-233 235-273 (451)
151 TIGR01984 UbiH 2-polyprenyl-6- 98.6 2.4E-07 5.3E-12 86.7 11.5 56 180-235 106-162 (382)
152 PRK09754 phenylpropionate diox 98.6 2.6E-07 5.6E-12 86.9 11.7 100 136-237 3-114 (396)
153 PTZ00363 rab-GDP dissociation 98.6 6.5E-07 1.4E-11 84.5 14.3 58 179-236 232-291 (443)
154 TIGR01988 Ubi-OHases Ubiquinon 98.6 4E-07 8.6E-12 85.3 12.7 56 180-235 107-163 (385)
155 PRK07233 hypothetical protein; 98.6 7.2E-08 1.6E-12 91.8 7.7 55 179-233 198-252 (434)
156 PRK01747 mnmC bifunctional tRN 98.6 1.1E-07 2.3E-12 95.3 8.7 56 179-235 408-463 (662)
157 PRK05868 hypothetical protein; 98.6 2.8E-07 6E-12 85.8 10.8 46 191-236 116-161 (372)
158 PRK06183 mhpA 3-(3-hydroxyphen 98.6 5.7E-07 1.2E-11 88.0 13.4 55 180-234 114-173 (538)
159 COG1231 Monoamine oxidase [Ami 98.6 4.4E-07 9.5E-12 83.1 11.5 46 11-56 5-51 (450)
160 PF01494 FAD_binding_3: FAD bi 98.6 5.5E-08 1.2E-12 89.8 5.8 56 180-235 112-172 (356)
161 PRK06184 hypothetical protein; 98.6 2.1E-07 4.5E-12 90.3 9.9 55 180-234 110-167 (502)
162 PF13738 Pyr_redox_3: Pyridine 98.6 2E-07 4.4E-12 79.0 8.6 92 140-233 1-136 (203)
163 PF01134 GIDA: Glucose inhibit 98.6 8.3E-08 1.8E-12 87.8 6.4 45 258-305 347-391 (392)
164 PRK12416 protoporphyrinogen ox 98.6 5.1E-07 1.1E-11 86.8 12.2 51 180-232 227-277 (463)
165 PRK13369 glycerol-3-phosphate 98.6 3.8E-07 8.3E-12 88.3 11.3 57 178-234 154-214 (502)
166 PRK06481 fumarate reductase fl 98.6 3.7E-07 8E-12 88.4 11.1 58 179-236 190-253 (506)
167 PRK13800 putative oxidoreducta 98.6 4E-07 8.6E-12 94.0 11.9 50 252-303 361-410 (897)
168 TIGR03140 AhpF alkyl hydropero 98.6 4.5E-07 9.8E-12 88.0 11.5 102 134-237 210-325 (515)
169 PRK05732 2-octaprenyl-6-methox 98.6 6E-07 1.3E-11 84.4 11.9 55 181-235 114-169 (395)
170 TIGR01790 carotene-cycl lycope 98.6 6.8E-07 1.5E-11 83.9 12.2 55 180-235 86-141 (388)
171 TIGR02734 crtI_fam phytoene de 98.6 1.8E-06 3.9E-11 83.9 15.4 56 179-234 219-275 (502)
172 PRK08244 hypothetical protein; 98.6 3.2E-07 7E-12 88.8 10.0 56 180-235 101-159 (493)
173 PF05834 Lycopene_cycl: Lycope 98.5 8.9E-07 1.9E-11 82.5 12.2 56 180-236 88-143 (374)
174 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 3.4E-06 7.3E-11 78.6 15.7 46 258-306 321-366 (433)
175 PRK15317 alkyl hydroperoxide r 98.5 6.2E-07 1.3E-11 87.2 11.4 100 136-237 211-324 (517)
176 TIGR00562 proto_IX_ox protopor 98.5 1.3E-06 2.9E-11 83.9 13.3 50 182-233 228-277 (462)
177 PLN02268 probable polyamine ox 98.5 4.2E-07 9.2E-12 86.6 9.5 49 184-233 202-250 (435)
178 PRK07045 putative monooxygenas 98.5 9E-07 2E-11 83.0 11.6 56 180-235 107-165 (388)
179 PRK06617 2-octaprenyl-6-methox 98.5 1.4E-06 3E-11 81.3 12.7 56 180-236 105-161 (374)
180 PRK08850 2-octaprenyl-6-methox 98.5 1.3E-06 2.9E-11 82.4 12.5 55 181-235 113-168 (405)
181 PRK13512 coenzyme A disulfide 98.5 9.6E-07 2.1E-11 84.1 11.4 102 137-238 2-120 (438)
182 TIGR03169 Nterm_to_SelD pyridi 98.5 5.1E-07 1.1E-11 84.0 9.3 99 138-239 1-111 (364)
183 PRK08274 tricarballylate dehyd 98.5 3.1E-06 6.7E-11 81.4 14.9 55 179-233 131-190 (466)
184 PRK06475 salicylate hydroxylas 98.5 2.9E-06 6.2E-11 80.0 14.1 56 180-235 108-167 (400)
185 COG0665 DadA Glycine/D-amino a 98.5 6.5E-07 1.4E-11 83.9 9.3 55 179-234 156-211 (387)
186 PRK06175 L-aspartate oxidase; 98.5 5.1E-07 1.1E-11 85.7 8.6 37 12-48 3-39 (433)
187 TIGR01813 flavo_cyto_c flavocy 98.5 1.6E-06 3.4E-11 82.8 11.9 55 179-233 130-190 (439)
188 PRK04965 NADH:flavorubredoxin 98.5 1.2E-06 2.6E-11 81.9 10.6 99 137-238 3-114 (377)
189 PRK08243 4-hydroxybenzoate 3-m 98.5 1.3E-06 2.8E-11 82.0 10.8 56 180-235 104-163 (392)
190 TIGR01989 COQ6 Ubiquinone bios 98.4 2E-06 4.3E-11 81.9 11.8 57 180-236 118-184 (437)
191 PRK06185 hypothetical protein; 98.4 3.5E-06 7.7E-11 79.6 13.4 56 180-235 109-169 (407)
192 PRK05192 tRNA uridine 5-carbox 98.4 5E-07 1.1E-11 87.3 7.5 44 257-303 350-393 (618)
193 PRK14989 nitrite reductase sub 98.4 1.2E-06 2.6E-11 89.2 10.4 100 137-238 4-116 (847)
194 COG1232 HemY Protoporphyrinoge 98.4 2.3E-06 4.9E-11 80.0 10.6 51 180-233 216-266 (444)
195 COG0029 NadB Aspartate oxidase 98.4 5E-06 1.1E-10 76.9 12.4 32 15-46 9-40 (518)
196 PLN02612 phytoene desaturase 98.4 1E-05 2.2E-10 79.5 15.4 55 179-233 308-364 (567)
197 PF13450 NAD_binding_8: NAD(P) 98.4 3.6E-07 7.9E-12 62.4 3.6 35 18-52 1-36 (68)
198 TIGR02374 nitri_red_nirB nitri 98.4 1.4E-06 3E-11 88.7 9.3 98 139-238 1-111 (785)
199 PLN02172 flavin-containing mon 98.4 3.2E-06 7E-11 80.6 11.2 102 135-238 9-178 (461)
200 COG1252 Ndh NADH dehydrogenase 98.4 2.3E-06 5E-11 78.8 9.6 100 136-238 3-114 (405)
201 PRK08132 FAD-dependent oxidore 98.4 3.5E-06 7.5E-11 82.7 11.6 57 180-236 126-186 (547)
202 PRK07236 hypothetical protein; 98.4 3.5E-06 7.5E-11 79.0 11.1 98 136-235 6-154 (386)
203 PLN02697 lycopene epsilon cycl 98.4 2.5E-06 5.4E-11 82.3 10.1 103 11-113 106-248 (529)
204 COG1635 THI4 Ribulose 1,5-bisp 98.3 3.6E-07 7.8E-12 75.4 3.2 37 13-49 30-67 (262)
205 PTZ00318 NADH dehydrogenase-li 98.3 3.7E-06 8.1E-11 79.7 10.4 101 135-238 9-128 (424)
206 TIGR02032 GG-red-SF geranylger 98.3 1.2E-06 2.6E-11 78.8 6.8 35 14-48 1-36 (295)
207 PRK07804 L-aspartate oxidase; 98.3 1.9E-05 4.1E-10 77.1 15.6 38 11-48 14-52 (541)
208 PF01946 Thi4: Thi4 family; PD 98.3 4.8E-07 1E-11 75.1 3.5 38 12-49 16-54 (230)
209 PLN02464 glycerol-3-phosphate 98.3 3.9E-06 8.4E-11 83.1 10.4 57 178-234 231-295 (627)
210 PRK07538 hypothetical protein; 98.3 4.5E-06 9.8E-11 79.0 10.5 56 180-235 103-165 (413)
211 COG2907 Predicted NAD/FAD-bind 98.3 5.3E-06 1.2E-10 73.2 9.5 43 12-54 7-49 (447)
212 TIGR01789 lycopene_cycl lycope 98.3 3.5E-06 7.6E-11 78.3 9.1 99 15-113 1-138 (370)
213 KOG0685 Flavin-containing amin 98.3 2.3E-05 5.1E-10 72.1 13.6 42 9-50 17-60 (498)
214 PLN02487 zeta-carotene desatur 98.3 1.3E-05 2.8E-10 78.1 12.5 55 180-234 296-359 (569)
215 TIGR02032 GG-red-SF geranylger 98.2 8.6E-06 1.9E-10 73.2 10.6 96 138-235 2-148 (295)
216 PF07992 Pyr_redox_2: Pyridine 98.2 1.3E-06 2.9E-11 73.8 4.7 100 138-239 1-126 (201)
217 PLN00093 geranylgeranyl diphos 98.2 1.2E-06 2.6E-11 83.4 4.8 41 6-46 32-73 (450)
218 PRK08401 L-aspartate oxidase; 98.2 4.6E-06 1E-10 80.0 8.7 54 179-234 120-174 (466)
219 PRK05945 sdhA succinate dehydr 98.2 1.9E-05 4.1E-10 77.8 12.8 55 179-233 135-195 (575)
220 COG0492 TrxB Thioredoxin reduc 98.2 4.9E-05 1.1E-09 68.2 14.3 98 137-238 4-118 (305)
221 KOG2853 Possible oxidoreductas 98.2 2.3E-05 5E-10 69.0 11.7 38 12-49 85-127 (509)
222 PF04820 Trp_halogenase: Trypt 98.2 2.5E-06 5.4E-11 81.3 6.2 55 180-235 155-211 (454)
223 PRK06834 hypothetical protein; 98.2 1.3E-05 2.8E-10 77.3 11.2 98 137-236 4-157 (488)
224 PRK07803 sdhA succinate dehydr 98.2 5.7E-05 1.2E-09 75.1 15.8 36 12-47 7-43 (626)
225 PRK08205 sdhA succinate dehydr 98.2 5.5E-06 1.2E-10 81.6 8.6 56 179-234 140-205 (583)
226 COG0578 GlpA Glycerol-3-phosph 98.2 3.3E-06 7E-11 80.2 6.4 57 178-234 163-224 (532)
227 PRK11749 dihydropyrimidine deh 98.2 5.2E-06 1.1E-10 79.6 7.9 90 134-234 138-236 (457)
228 PRK12770 putative glutamate sy 98.2 8.1E-06 1.7E-10 75.5 8.7 99 134-234 16-129 (352)
229 PRK12831 putative oxidoreducta 98.2 1.3E-05 2.7E-10 76.9 10.3 93 134-236 138-242 (464)
230 PRK10262 thioredoxin reductase 98.2 2.2E-05 4.8E-10 71.6 11.4 100 135-238 5-120 (321)
231 COG1249 Lpd Pyruvate/2-oxoglut 98.1 6.8E-06 1.5E-10 77.5 7.9 99 11-118 171-277 (454)
232 KOG0029 Amine oxidase [Seconda 98.1 2.7E-06 5.8E-11 81.3 5.3 43 9-51 11-54 (501)
233 KOG2665 Predicted FAD-dependen 98.1 2.6E-05 5.5E-10 68.0 10.7 56 180-235 197-257 (453)
234 PF13454 NAD_binding_9: FAD-NA 98.1 8.8E-06 1.9E-10 65.9 7.5 35 77-111 117-155 (156)
235 TIGR03143 AhpF_homolog putativ 98.1 1.8E-05 4E-10 77.5 11.1 97 137-238 5-117 (555)
236 PRK12779 putative bifunctional 98.1 8.8E-06 1.9E-10 83.9 9.1 92 135-236 305-406 (944)
237 PF06039 Mqo: Malate:quinone o 98.1 1.7E-05 3.8E-10 73.2 9.8 66 180-246 182-254 (488)
238 PRK06263 sdhA succinate dehydr 98.1 1.9E-05 4E-10 77.4 10.7 55 179-233 134-195 (543)
239 TIGR01316 gltA glutamate synth 98.1 7E-06 1.5E-10 78.4 7.5 91 135-236 132-232 (449)
240 PRK07573 sdhA succinate dehydr 98.1 3.2E-05 7E-10 76.9 12.4 36 12-47 34-70 (640)
241 PLN02852 ferredoxin-NADP+ redu 98.1 1E-05 2.2E-10 77.2 8.4 92 135-235 25-126 (491)
242 PRK09853 putative selenate red 98.1 1.8E-05 3.8E-10 81.0 10.3 90 135-236 538-636 (1019)
243 TIGR01812 sdhA_frdA_Gneg succi 98.1 3.5E-05 7.6E-10 75.9 11.6 55 179-233 129-189 (566)
244 TIGR00551 nadB L-aspartate oxi 98.0 1.3E-05 2.8E-10 77.5 8.0 56 179-234 128-188 (488)
245 TIGR01424 gluta_reduc_2 glutat 98.0 3.8E-05 8.3E-10 73.4 10.9 94 138-238 4-145 (446)
246 TIGR01176 fum_red_Fp fumarate 98.0 8.8E-05 1.9E-09 73.0 12.9 55 179-233 132-193 (580)
247 PRK05249 soluble pyridine nucl 98.0 7.3E-05 1.6E-09 71.8 11.6 97 137-238 6-152 (461)
248 PRK07251 pyridine nucleotide-d 98.0 5.7E-05 1.2E-09 72.1 10.8 97 137-238 4-133 (438)
249 PRK07845 flavoprotein disulfid 98.0 8.6E-05 1.9E-09 71.3 11.7 97 137-236 2-152 (466)
250 TIGR01318 gltD_gamma_fam gluta 97.9 2.3E-05 4.9E-10 75.2 7.5 91 135-236 140-239 (467)
251 PRK07208 hypothetical protein; 97.9 9.7E-06 2.1E-10 78.3 4.8 55 179-233 218-278 (479)
252 TIGR01789 lycopene_cycl lycope 97.9 6.8E-05 1.5E-09 69.7 10.2 94 138-235 1-138 (370)
253 TIGR02023 BchP-ChlP geranylger 97.9 8.2E-06 1.8E-10 76.5 4.0 31 14-44 1-32 (388)
254 KOG1336 Monodehydroascorbate/f 97.9 4.8E-05 1E-09 70.2 8.8 101 134-237 72-183 (478)
255 COG1635 THI4 Ribulose 1,5-bisp 97.9 7.7E-05 1.7E-09 61.9 9.0 164 136-303 30-260 (262)
256 PF00743 FMO-like: Flavin-bind 97.9 8.6E-05 1.9E-09 72.0 10.9 136 136-276 1-193 (531)
257 TIGR01350 lipoamide_DH dihydro 97.9 3.2E-05 6.9E-10 74.3 8.0 96 13-117 170-273 (461)
258 COG0445 GidA Flavin-dependent 97.9 1.2E-05 2.7E-10 75.2 4.8 45 259-306 352-396 (621)
259 PF12831 FAD_oxidored: FAD dep 97.9 1E-05 2.2E-10 76.7 4.4 35 15-49 1-36 (428)
260 PRK12778 putative bifunctional 97.9 3.1E-05 6.8E-10 78.8 8.1 93 135-237 430-532 (752)
261 PRK09897 hypothetical protein; 97.9 0.00012 2.6E-09 70.9 11.5 99 137-235 2-166 (534)
262 PRK06753 hypothetical protein; 97.9 0.00012 2.7E-09 68.2 11.2 97 138-236 2-153 (373)
263 PRK08010 pyridine nucleotide-d 97.9 9.4E-05 2E-09 70.6 10.6 97 137-238 4-134 (441)
264 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 1.3E-05 2.9E-10 75.2 4.4 34 13-46 2-36 (390)
265 PRK06416 dihydrolipoamide dehy 97.9 4E-05 8.7E-10 73.7 7.7 96 13-117 172-276 (462)
266 PRK05976 dihydrolipoamide dehy 97.9 0.00014 3.1E-09 70.0 11.5 97 136-236 4-155 (472)
267 TIGR01317 GOGAT_sm_gam glutama 97.9 4.2E-05 9.1E-10 73.7 7.6 89 135-234 142-239 (485)
268 PRK12775 putative trifunctiona 97.9 4.6E-05 9.9E-10 79.4 8.4 91 136-236 430-531 (1006)
269 PRK01438 murD UDP-N-acetylmura 97.9 7.6E-05 1.6E-09 72.1 9.4 83 135-242 15-97 (480)
270 COG3380 Predicted NAD/FAD-depe 97.8 1.7E-05 3.7E-10 67.8 4.1 35 14-48 2-37 (331)
271 COG3349 Uncharacterized conser 97.8 1.6E-05 3.5E-10 74.3 4.3 41 14-54 1-42 (485)
272 PRK11445 putative oxidoreducta 97.8 1.7E-05 3.6E-10 73.4 4.4 34 13-46 1-34 (351)
273 PLN02661 Putative thiazole syn 97.8 0.00035 7.7E-09 63.4 12.6 166 136-304 92-329 (357)
274 PRK07236 hypothetical protein; 97.8 1.8E-05 3.9E-10 74.2 4.6 35 12-46 5-40 (386)
275 PRK06116 glutathione reductase 97.8 0.00013 2.9E-09 69.8 10.6 92 138-238 6-146 (450)
276 PRK06467 dihydrolipoamide dehy 97.8 9.9E-05 2.1E-09 71.0 9.5 95 137-236 5-149 (471)
277 TIGR02028 ChlP geranylgeranyl 97.8 1.7E-05 3.7E-10 74.5 4.1 33 14-46 1-34 (398)
278 PLN02576 protoporphyrinogen ox 97.8 2E-05 4.3E-10 76.5 4.6 39 12-50 11-51 (496)
279 TIGR03385 CoA_CoA_reduc CoA-di 97.8 4.7E-05 1E-09 72.4 7.0 95 13-115 137-235 (427)
280 TIGR03315 Se_ygfK putative sel 97.8 9E-05 2E-09 76.2 8.9 88 136-235 537-633 (1012)
281 PRK07846 mycothione reductase; 97.8 7.8E-05 1.7E-09 71.3 8.0 96 13-118 166-267 (451)
282 PRK06753 hypothetical protein; 97.8 2.3E-05 5E-10 73.1 4.2 33 14-46 1-34 (373)
283 PF01134 GIDA: Glucose inhibit 97.8 0.00027 5.7E-09 65.1 10.9 93 138-233 1-150 (392)
284 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.5E-05 5.5E-10 72.1 4.2 36 14-49 2-38 (377)
285 PLN02568 polyamine oxidase 97.8 2.8E-05 6.2E-10 75.6 4.8 50 181-232 244-293 (539)
286 PRK06126 hypothetical protein; 97.8 2.6E-05 5.7E-10 76.6 4.6 38 9-46 3-41 (545)
287 PRK12810 gltD glutamate syntha 97.7 8.2E-05 1.8E-09 71.6 7.6 89 135-234 142-239 (471)
288 TIGR02733 desat_CrtD C-3',4' d 97.7 2.7E-05 5.9E-10 75.5 4.3 55 179-233 232-292 (492)
289 PRK06327 dihydrolipoamide dehy 97.7 8.6E-05 1.9E-09 71.6 7.7 96 13-117 183-288 (475)
290 PLN02985 squalene monooxygenas 97.7 3.1E-05 6.7E-10 75.0 4.5 37 9-45 39-76 (514)
291 PTZ00367 squalene epoxidase; P 97.7 2.6E-05 5.7E-10 76.1 4.0 36 10-45 30-66 (567)
292 KOG2404 Fumarate reductase, fl 97.7 0.00036 7.9E-09 61.2 10.3 38 15-52 11-49 (477)
293 PRK06912 acoL dihydrolipoamide 97.7 0.00011 2.5E-09 70.4 8.1 96 13-117 170-272 (458)
294 PRK12814 putative NADPH-depend 97.7 9.1E-05 2E-09 74.0 7.5 90 135-235 192-290 (652)
295 PRK06370 mercuric reductase; V 97.7 0.00026 5.6E-09 68.1 10.4 94 137-238 6-148 (463)
296 KOG2415 Electron transfer flav 97.7 2.7E-05 5.8E-10 70.4 3.3 39 11-49 74-119 (621)
297 TIGR02485 CobZ_N-term precorri 97.7 0.00056 1.2E-08 65.2 12.4 54 179-232 123-180 (432)
298 PLN02697 lycopene epsilon cycl 97.7 0.00035 7.6E-09 67.6 10.9 96 137-235 109-248 (529)
299 TIGR02730 carot_isom carotene 97.7 3.9E-05 8.5E-10 74.3 4.2 56 179-234 229-285 (493)
300 TIGR02053 MerA mercuric reduct 97.7 0.00012 2.6E-09 70.4 7.4 96 13-117 166-270 (463)
301 PF13454 NAD_binding_9: FAD-NA 97.7 0.00052 1.1E-08 55.5 9.9 94 140-233 1-155 (156)
302 PLN02661 Putative thiazole syn 97.6 4.4E-05 9.5E-10 69.1 3.9 37 12-48 91-129 (357)
303 COG0446 HcaD Uncharacterized N 97.6 8.6E-05 1.9E-09 70.1 6.2 94 13-114 136-238 (415)
304 TIGR01421 gluta_reduc_1 glutat 97.6 0.00012 2.6E-09 70.1 7.1 96 13-117 166-269 (450)
305 PRK05335 tRNA (uracil-5-)-meth 97.6 4.8E-05 1E-09 70.7 4.2 47 257-306 321-367 (436)
306 PRK12809 putative oxidoreducta 97.6 0.00012 2.7E-09 73.0 7.4 90 135-235 309-407 (639)
307 TIGR03452 mycothione_red mycot 97.6 0.00017 3.6E-09 69.1 8.0 95 13-117 169-269 (452)
308 PRK14694 putative mercuric red 97.6 0.00015 3.2E-09 69.8 7.7 94 13-117 178-277 (468)
309 PRK06834 hypothetical protein; 97.6 5.5E-05 1.2E-09 73.0 4.4 34 13-46 3-37 (488)
310 PTZ00188 adrenodoxin reductase 97.6 0.00022 4.7E-09 67.5 7.9 92 135-236 38-139 (506)
311 PRK07121 hypothetical protein; 97.6 6.6E-05 1.4E-09 72.7 4.7 38 12-49 19-57 (492)
312 COG2072 TrkA Predicted flavopr 97.6 0.002 4.3E-08 61.4 14.6 133 136-276 8-185 (443)
313 PF00890 FAD_binding_2: FAD bi 97.6 5.5E-05 1.2E-09 71.7 4.0 58 179-236 141-204 (417)
314 PLN02507 glutathione reductase 97.6 0.00019 4.2E-09 69.4 7.7 96 13-117 203-304 (499)
315 KOG1399 Flavin-containing mono 97.6 0.0012 2.5E-08 62.4 12.6 136 136-276 6-196 (448)
316 TIGR03219 salicylate_mono sali 97.6 0.00049 1.1E-08 65.2 10.3 96 138-235 2-159 (414)
317 PF00070 Pyr_redox: Pyridine n 97.6 8.7E-05 1.9E-09 52.5 4.0 34 15-48 1-35 (80)
318 PRK06115 dihydrolipoamide dehy 97.6 0.00048 1E-08 66.2 10.3 94 138-236 5-149 (466)
319 PRK07818 dihydrolipoamide dehy 97.6 0.00022 4.9E-09 68.6 7.9 96 13-117 172-277 (466)
320 TIGR02731 phytoene_desat phyto 97.6 6.4E-05 1.4E-09 72.1 4.1 55 179-233 213-274 (453)
321 PLN02927 antheraxanthin epoxid 97.6 7.7E-05 1.7E-09 73.6 4.4 35 11-45 79-114 (668)
322 PRK08294 phenol 2-monooxygenas 97.5 8E-05 1.7E-09 74.1 4.6 36 11-46 30-67 (634)
323 PRK12769 putative oxidoreducta 97.5 0.00019 4.1E-09 72.0 7.2 90 135-235 326-424 (654)
324 COG0562 Glf UDP-galactopyranos 97.5 9.2E-05 2E-09 64.9 4.0 38 13-50 1-39 (374)
325 TIGR01372 soxA sarcosine oxida 97.5 0.00078 1.7E-08 70.6 11.5 100 136-237 163-288 (985)
326 PRK07395 L-aspartate oxidase; 97.5 0.00011 2.3E-09 72.0 4.8 36 12-47 8-43 (553)
327 COG1251 NirB NAD(P)H-nitrite r 97.5 0.00066 1.4E-08 66.1 9.9 102 136-239 3-117 (793)
328 PF00732 GMC_oxred_N: GMC oxid 97.5 9.8E-05 2.1E-09 66.5 4.1 64 182-245 196-268 (296)
329 TIGR01423 trypano_reduc trypan 97.5 0.00026 5.6E-09 68.3 6.9 96 13-117 187-292 (486)
330 PTZ00052 thioredoxin reductase 97.5 0.00031 6.6E-09 68.1 7.3 95 13-117 182-282 (499)
331 TIGR03219 salicylate_mono sali 97.5 0.00012 2.6E-09 69.3 4.5 34 14-47 1-36 (414)
332 PLN02529 lysine-specific histo 97.5 0.00013 2.8E-09 72.9 4.7 40 11-50 158-198 (738)
333 PRK05192 tRNA uridine 5-carbox 97.5 0.00074 1.6E-08 65.8 9.7 94 137-233 5-155 (618)
334 PLN02676 polyamine oxidase 97.5 0.00014 3E-09 70.2 4.6 40 194-233 245-284 (487)
335 PRK08071 L-aspartate oxidase; 97.4 0.00014 3E-09 70.6 4.6 34 13-46 3-36 (510)
336 PRK08641 sdhA succinate dehydr 97.4 0.00013 2.8E-09 72.1 4.3 53 251-304 354-412 (589)
337 PRK07057 sdhA succinate dehydr 97.4 0.00013 2.7E-09 72.2 4.2 36 10-45 9-45 (591)
338 PRK12837 3-ketosteroid-delta-1 97.4 0.00013 2.8E-09 71.0 4.2 37 12-49 6-43 (513)
339 PLN02328 lysine-specific histo 97.4 0.00016 3.5E-09 72.7 4.9 41 10-50 235-276 (808)
340 PRK06452 sdhA succinate dehydr 97.4 0.00015 3.3E-09 71.2 4.4 53 251-303 345-404 (566)
341 PRK11445 putative oxidoreducta 97.4 0.0019 4.2E-08 59.7 11.1 95 138-235 3-157 (351)
342 PRK12834 putative FAD-binding 97.4 0.00018 4E-09 70.6 4.4 34 12-45 3-37 (549)
343 TIGR02732 zeta_caro_desat caro 97.4 0.00016 3.5E-09 69.5 3.9 55 180-234 220-283 (474)
344 PRK06069 sdhA succinate dehydr 97.3 0.00019 4.1E-09 70.8 4.2 53 251-303 351-415 (577)
345 PRK12771 putative glutamate sy 97.3 0.00072 1.6E-08 66.7 8.2 90 134-235 135-234 (564)
346 PRK09078 sdhA succinate dehydr 97.3 0.00022 4.7E-09 70.6 4.4 35 12-46 11-46 (598)
347 PRK06126 hypothetical protein; 97.3 0.0015 3.3E-08 64.2 10.3 51 184-234 131-187 (545)
348 PRK13984 putative oxidoreducta 97.3 0.00061 1.3E-08 67.8 7.5 90 134-234 281-379 (604)
349 PRK06854 adenylylsulfate reduc 97.3 0.00018 3.9E-09 71.3 3.7 45 259-304 389-433 (608)
350 PRK12835 3-ketosteroid-delta-1 97.3 0.00027 5.9E-09 69.7 4.9 38 12-49 10-48 (584)
351 TIGR00136 gidA glucose-inhibit 97.3 0.0017 3.8E-08 63.2 10.2 95 138-235 2-154 (617)
352 PRK08626 fumarate reductase fl 97.3 0.00022 4.8E-09 71.2 4.2 53 252-304 372-431 (657)
353 PTZ00139 Succinate dehydrogena 97.3 0.00024 5.1E-09 70.5 4.4 35 12-46 28-63 (617)
354 TIGR01438 TGR thioredoxin and 97.3 0.00056 1.2E-08 66.0 6.8 95 13-117 180-283 (484)
355 PTZ00058 glutathione reductase 97.3 0.00056 1.2E-08 66.9 6.7 96 13-117 237-340 (561)
356 PRK14727 putative mercuric red 97.3 0.00068 1.5E-08 65.5 7.3 94 13-117 188-287 (479)
357 PRK12845 3-ketosteroid-delta-1 97.3 0.00029 6.4E-09 69.1 4.7 39 11-50 14-53 (564)
358 PRK12844 3-ketosteroid-delta-1 97.3 0.00027 5.8E-09 69.4 4.4 38 12-49 5-43 (557)
359 KOG2311 NAD/FAD-utilizing prot 97.3 0.00023 5E-09 65.6 3.6 45 259-306 381-425 (679)
360 PRK13748 putative mercuric red 97.3 0.0023 5.1E-08 63.1 11.1 96 137-238 99-247 (561)
361 KOG0404 Thioredoxin reductase 97.3 0.0033 7.2E-08 52.4 10.0 101 136-240 8-129 (322)
362 PRK06292 dihydrolipoamide dehy 97.3 0.00066 1.4E-08 65.3 6.8 95 13-117 169-272 (460)
363 PLN00128 Succinate dehydrogena 97.3 0.00028 6E-09 70.2 4.3 34 13-46 50-84 (635)
364 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00025 5.3E-09 72.3 4.1 33 14-46 1-36 (765)
365 PRK09077 L-aspartate oxidase; 97.3 0.00028 6.1E-09 69.0 4.3 35 12-46 7-41 (536)
366 PRK02106 choline dehydrogenase 97.2 0.00031 6.6E-09 69.2 4.6 37 10-46 2-40 (560)
367 TIGR02023 BchP-ChlP geranylger 97.2 0.003 6.5E-08 59.3 10.7 94 138-234 2-154 (388)
368 PRK08958 sdhA succinate dehydr 97.2 0.00031 6.8E-09 69.3 4.2 34 13-46 7-41 (588)
369 PRK08275 putative oxidoreducta 97.2 0.00027 5.9E-09 69.4 3.7 50 253-304 357-406 (554)
370 KOG2614 Kynurenine 3-monooxyge 97.2 0.00033 7.2E-09 63.7 3.9 35 13-47 2-37 (420)
371 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.0011 2.4E-08 62.0 7.4 34 138-173 2-35 (433)
372 PRK12839 hypothetical protein; 97.2 0.00043 9.2E-09 68.1 4.8 38 12-49 7-45 (572)
373 TIGR02360 pbenz_hydroxyl 4-hyd 97.2 0.0041 8.8E-08 58.4 11.2 97 137-235 3-163 (390)
374 PF06100 Strep_67kDa_ant: Stre 97.1 0.0013 2.8E-08 61.7 7.2 57 179-235 207-274 (500)
375 PLN02815 L-aspartate oxidase 97.1 0.00051 1.1E-08 67.7 4.7 35 12-47 28-63 (594)
376 PRK06567 putative bifunctional 97.1 0.0011 2.5E-08 67.5 7.2 35 134-170 381-415 (1028)
377 KOG2755 Oxidoreductase [Genera 97.1 0.0015 3.3E-08 55.8 6.7 97 138-237 1-106 (334)
378 KOG2495 NADH-dehydrogenase (ub 97.1 0.0039 8.5E-08 57.1 9.7 101 135-238 54-173 (491)
379 KOG2844 Dimethylglycine dehydr 97.1 0.00023 5E-09 68.2 2.0 71 162-235 172-243 (856)
380 TIGR02061 aprA adenosine phosp 97.1 0.00043 9.4E-09 68.3 4.0 45 259-304 400-444 (614)
381 COG0493 GltD NADPH-dependent g 97.1 0.0011 2.4E-08 62.8 6.5 89 135-234 122-219 (457)
382 TIGR02462 pyranose_ox pyranose 97.1 0.00047 1E-08 66.7 4.0 38 14-51 1-39 (544)
383 PF12831 FAD_oxidored: FAD dep 97.1 0.00052 1.1E-08 65.2 4.3 94 138-233 1-148 (428)
384 KOG1298 Squalene monooxygenase 97.1 0.00052 1.1E-08 61.7 3.9 35 10-44 42-77 (509)
385 PRK07512 L-aspartate oxidase; 97.1 0.00057 1.2E-08 66.5 4.4 34 12-46 8-41 (513)
386 KOG3851 Sulfide:quinone oxidor 97.1 0.00066 1.4E-08 59.6 4.3 103 136-241 39-151 (446)
387 PLN02927 antheraxanthin epoxid 97.1 0.0049 1.1E-07 61.2 10.8 36 134-171 79-114 (668)
388 COG1053 SdhA Succinate dehydro 97.0 0.00063 1.4E-08 66.3 4.4 37 10-46 3-40 (562)
389 PRK09231 fumarate reductase fl 97.0 0.00051 1.1E-08 67.8 3.8 53 251-304 357-416 (582)
390 PLN02785 Protein HOTHEAD 97.0 0.00079 1.7E-08 66.3 4.8 36 11-46 53-88 (587)
391 COG1148 HdrA Heterodisulfide r 97.0 0.0029 6.2E-08 58.8 7.8 83 135-219 123-218 (622)
392 KOG1276 Protoporphyrinogen oxi 97.0 0.00081 1.8E-08 61.4 4.2 40 11-50 9-51 (491)
393 PLN03000 amine oxidase 97.0 0.00084 1.8E-08 67.9 4.6 40 12-51 183-223 (881)
394 COG3380 Predicted NAD/FAD-depe 97.0 0.0044 9.5E-08 53.4 8.1 99 138-240 3-165 (331)
395 PTZ00306 NADH-dependent fumara 96.9 0.00078 1.7E-08 71.7 4.4 37 12-48 408-445 (1167)
396 KOG0399 Glutamate synthase [Am 96.9 0.0022 4.7E-08 65.2 7.0 90 134-234 1783-1881(2142)
397 PTZ00153 lipoamide dehydrogena 96.9 0.0029 6.3E-08 63.0 7.9 36 13-48 312-348 (659)
398 COG3634 AhpF Alkyl hydroperoxi 96.9 0.002 4.2E-08 57.4 5.8 99 134-234 209-324 (520)
399 TIGR02028 ChlP geranylgeranyl 96.9 0.0094 2E-07 56.1 10.9 32 138-171 2-33 (398)
400 PLN02546 glutathione reductase 96.9 0.002 4.4E-08 63.0 6.5 97 12-117 251-354 (558)
401 PF02852 Pyr_redox_dim: Pyridi 96.9 7.4E-05 1.6E-09 56.5 -2.8 52 316-369 8-72 (110)
402 COG4529 Uncharacterized protei 96.8 0.012 2.6E-07 55.0 10.5 37 137-173 2-39 (474)
403 PRK12843 putative FAD-binding 96.8 0.0014 3.1E-08 64.7 4.8 38 12-49 15-53 (578)
404 PLN02976 amine oxidase 96.8 0.0014 3E-08 69.1 4.4 40 12-51 692-732 (1713)
405 COG2303 BetA Choline dehydroge 96.8 0.0015 3.3E-08 63.8 4.4 63 183-245 207-276 (542)
406 PLN00093 geranylgeranyl diphos 96.7 0.016 3.4E-07 55.4 11.0 95 137-234 40-198 (450)
407 COG0445 GidA Flavin-dependent 96.7 0.0059 1.3E-07 57.8 7.7 94 137-233 5-156 (621)
408 TIGR01811 sdhA_Bsu succinate d 96.7 0.0011 2.4E-08 65.6 3.2 50 252-302 370-425 (603)
409 KOG2960 Protein involved in th 96.6 0.00058 1.3E-08 56.3 0.3 35 13-47 76-113 (328)
410 PF01946 Thi4: Thi4 family; PD 96.5 0.018 3.9E-07 48.3 8.3 99 136-236 17-166 (230)
411 TIGR01810 betA choline dehydro 96.5 0.0025 5.4E-08 62.4 3.9 63 184-246 199-266 (532)
412 COG3573 Predicted oxidoreducta 96.5 0.0036 7.8E-08 55.4 4.3 35 12-46 4-39 (552)
413 PRK08294 phenol 2-monooxygenas 96.4 0.025 5.4E-07 56.5 10.6 98 136-234 32-209 (634)
414 KOG1346 Programmed cell death 96.4 0.006 1.3E-07 55.6 5.3 97 138-237 180-313 (659)
415 PLN02985 squalene monooxygenas 96.4 0.034 7.4E-07 54.1 11.0 33 136-170 43-75 (514)
416 PRK08255 salicylyl-CoA 5-hydro 96.3 0.015 3.3E-07 59.5 8.7 35 138-172 2-36 (765)
417 KOG1335 Dihydrolipoamide dehyd 96.3 0.0034 7.5E-08 56.6 3.4 101 11-120 209-321 (506)
418 KOG1238 Glucose dehydrogenase/ 96.3 0.0048 1E-07 59.6 4.3 38 10-47 54-93 (623)
419 PF00890 FAD_binding_2: FAD bi 96.2 0.028 6.1E-07 53.2 9.4 33 138-172 1-33 (417)
420 KOG0042 Glycerol-3-phosphate d 96.1 0.0026 5.6E-08 59.9 1.7 38 11-48 65-103 (680)
421 PF13450 NAD_binding_8: NAD(P) 96.0 0.014 3.1E-07 39.6 4.5 33 141-175 1-33 (68)
422 PRK14106 murD UDP-N-acetylmura 96.0 0.035 7.6E-07 53.2 8.8 83 135-241 4-86 (450)
423 KOG4254 Phytoene desaturase [C 96.0 0.0055 1.2E-07 56.5 3.1 55 180-234 265-320 (561)
424 TIGR03862 flavo_PP4765 unchara 96.0 0.029 6.3E-07 51.9 7.9 67 167-235 72-141 (376)
425 PRK01438 murD UDP-N-acetylmura 96.0 0.01 2.2E-07 57.4 5.1 34 12-45 15-49 (480)
426 PRK09231 fumarate reductase fl 95.8 0.082 1.8E-06 52.4 10.9 53 181-233 135-194 (582)
427 KOG3855 Monooxygenase involved 95.8 0.009 1.9E-07 54.5 3.6 32 13-44 36-72 (481)
428 KOG2311 NAD/FAD-utilizing prot 95.8 0.03 6.6E-07 52.1 7.1 32 137-170 29-60 (679)
429 PF00996 GDI: GDP dissociation 95.7 0.011 2.4E-07 55.7 4.0 57 180-236 233-290 (438)
430 PRK07121 hypothetical protein; 95.7 0.1 2.2E-06 50.7 10.9 54 180-233 178-237 (492)
431 KOG1800 Ferredoxin/adrenodoxin 95.6 0.062 1.3E-06 48.7 7.9 88 137-234 21-119 (468)
432 PRK06854 adenylylsulfate reduc 95.6 0.02 4.3E-07 57.0 5.4 34 13-46 11-47 (608)
433 PTZ00367 squalene epoxidase; P 95.5 0.11 2.3E-06 51.3 10.1 34 136-171 33-66 (567)
434 TIGR03197 MnmC_Cterm tRNA U-34 95.5 0.019 4.1E-07 53.7 4.8 57 178-235 134-190 (381)
435 KOG2614 Kynurenine 3-monooxyge 95.5 0.074 1.6E-06 48.9 8.3 33 137-171 3-35 (420)
436 COG1004 Ugd Predicted UDP-gluc 95.4 0.059 1.3E-06 49.3 7.2 32 14-45 1-33 (414)
437 KOG2852 Possible oxidoreductas 95.4 0.0082 1.8E-07 52.2 1.7 41 9-49 6-53 (380)
438 COG0029 NadB Aspartate oxidase 95.2 0.12 2.6E-06 48.7 8.9 53 181-233 135-194 (518)
439 PF01494 FAD_binding_3: FAD bi 95.2 0.045 9.8E-07 50.2 6.3 35 138-174 3-37 (356)
440 PF13434 K_oxygenase: L-lysine 95.0 0.044 9.6E-07 50.3 5.5 100 138-238 4-162 (341)
441 TIGR02352 thiamin_ThiO glycine 95.0 0.054 1.2E-06 49.5 6.2 56 178-234 136-192 (337)
442 COG0569 TrkA K+ transport syst 94.9 0.029 6.3E-07 48.2 3.7 32 14-45 1-33 (225)
443 TIGR01470 cysG_Nterm siroheme 94.9 0.14 3E-06 43.4 7.6 78 135-239 8-86 (205)
444 PF13241 NAD_binding_7: Putati 94.8 0.032 6.9E-07 41.5 3.4 34 12-45 6-40 (103)
445 PRK05868 hypothetical protein; 94.8 0.055 1.2E-06 50.4 5.7 56 137-194 2-58 (372)
446 PRK05335 tRNA (uracil-5-)-meth 94.7 0.045 9.8E-07 51.3 4.7 35 137-173 3-37 (436)
447 PRK06184 hypothetical protein; 94.7 0.066 1.4E-06 52.1 6.1 56 137-194 4-60 (502)
448 PRK06475 salicylate hydroxylas 94.7 0.072 1.6E-06 50.2 6.1 56 137-194 3-59 (400)
449 COG0654 UbiH 2-polyprenyl-6-me 94.7 0.07 1.5E-06 50.1 6.0 56 137-194 3-60 (387)
450 PRK06847 hypothetical protein; 94.6 0.084 1.8E-06 49.2 6.4 36 136-173 4-39 (375)
451 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.04 8.6E-07 44.5 3.7 31 15-45 1-32 (157)
452 PRK08163 salicylate hydroxylas 94.5 0.077 1.7E-06 49.9 5.9 36 136-173 4-39 (396)
453 TIGR02730 carot_isom carotene 94.5 0.094 2E-06 50.9 6.6 36 14-49 1-37 (493)
454 PRK08244 hypothetical protein; 94.5 0.075 1.6E-06 51.6 5.9 35 137-173 3-37 (493)
455 TIGR01470 cysG_Nterm siroheme 94.4 0.056 1.2E-06 45.7 4.2 33 13-45 9-42 (205)
456 PRK08275 putative oxidoreducta 94.3 0.081 1.8E-06 52.1 5.8 35 12-46 8-45 (554)
457 PF04820 Trp_halogenase: Trypt 94.3 0.062 1.4E-06 51.4 4.8 34 138-171 1-35 (454)
458 PRK07494 2-octaprenyl-6-methox 94.2 0.11 2.4E-06 48.7 6.2 35 137-173 8-42 (388)
459 PRK06719 precorrin-2 dehydroge 94.2 0.073 1.6E-06 42.9 4.3 33 12-44 12-45 (157)
460 COG1232 HemY Protoporphyrinoge 94.2 0.076 1.6E-06 50.2 5.0 38 137-174 1-38 (444)
461 PRK06718 precorrin-2 dehydroge 94.0 0.23 4.9E-06 41.9 7.2 74 135-235 9-82 (202)
462 PRK07364 2-octaprenyl-6-methox 94.0 0.13 2.9E-06 48.6 6.4 57 136-194 18-77 (415)
463 KOG0405 Pyridine nucleotide-di 93.9 0.72 1.6E-05 41.6 10.2 73 182-259 113-187 (478)
464 TIGR01984 UbiH 2-polyprenyl-6- 93.9 0.15 3.3E-06 47.5 6.6 34 138-173 1-35 (382)
465 PRK07333 2-octaprenyl-6-methox 93.9 0.14 2.9E-06 48.3 6.2 35 138-172 3-37 (403)
466 PF03721 UDPG_MGDP_dh_N: UDP-g 93.8 0.064 1.4E-06 44.6 3.3 33 14-46 1-34 (185)
467 COG1206 Gid NAD(FAD)-utilizing 93.8 0.06 1.3E-06 47.9 3.2 47 257-306 325-371 (439)
468 KOG1276 Protoporphyrinogen oxi 93.7 0.11 2.5E-06 47.8 5.0 41 134-174 9-49 (491)
469 PRK11728 hydroxyglutarate oxid 93.7 0.1 2.2E-06 49.0 5.0 35 138-172 4-38 (393)
470 PRK14192 bifunctional 5,10-met 93.7 0.54 1.2E-05 41.9 9.2 34 134-169 157-191 (283)
471 PRK07538 hypothetical protein; 93.7 0.13 2.9E-06 48.7 5.7 35 138-174 2-36 (413)
472 PRK06718 precorrin-2 dehydroge 93.6 0.1 2.2E-06 44.0 4.3 33 12-44 9-42 (202)
473 KOG1298 Squalene monooxygenase 93.6 0.44 9.6E-06 43.6 8.4 32 137-170 46-77 (509)
474 COG2081 Predicted flavoprotein 93.6 0.2 4.3E-06 46.1 6.3 35 137-173 4-38 (408)
475 PRK02705 murD UDP-N-acetylmura 93.5 0.077 1.7E-06 51.0 3.9 32 15-46 2-34 (459)
476 PRK04176 ribulose-1,5-biphosph 93.5 0.47 1E-05 41.7 8.5 60 136-197 25-92 (257)
477 PRK09126 hypothetical protein; 93.5 0.16 3.6E-06 47.5 6.1 56 137-194 4-65 (392)
478 PRK14106 murD UDP-N-acetylmura 93.5 0.097 2.1E-06 50.2 4.5 34 12-45 4-38 (450)
479 PF02737 3HCDH_N: 3-hydroxyacy 93.4 0.072 1.6E-06 44.1 3.1 31 15-45 1-32 (180)
480 PRK15116 sulfur acceptor prote 93.4 0.14 3.1E-06 45.0 5.0 35 135-171 29-64 (268)
481 PRK11883 protoporphyrinogen ox 93.4 0.13 2.8E-06 49.2 5.1 38 137-174 1-38 (451)
482 PF01593 Amino_oxidase: Flavin 93.3 0.085 1.9E-06 49.7 3.9 53 181-233 211-263 (450)
483 PRK06185 hypothetical protein; 93.3 0.18 4E-06 47.5 6.0 57 136-194 6-63 (407)
484 PRK07395 L-aspartate oxidase; 93.3 0.42 9.2E-06 47.1 8.6 54 180-233 135-195 (553)
485 PRK02705 murD UDP-N-acetylmura 93.3 0.44 9.6E-06 45.8 8.7 85 138-241 2-86 (459)
486 KOG4405 GDP dissociation inhib 93.2 0.098 2.1E-06 47.9 3.7 45 12-56 7-52 (547)
487 PRK08013 oxidoreductase; Provi 93.2 0.21 4.6E-06 47.0 6.3 34 137-172 4-37 (400)
488 PRK07588 hypothetical protein; 93.2 0.15 3.3E-06 47.8 5.3 34 138-173 2-35 (391)
489 PRK07045 putative monooxygenas 93.1 0.19 4.1E-06 47.1 5.8 35 137-173 6-40 (388)
490 PRK05714 2-octaprenyl-3-methyl 93.1 0.24 5.1E-06 46.8 6.4 33 137-171 3-35 (405)
491 TIGR01988 Ubi-OHases Ubiquinon 93.0 0.26 5.6E-06 46.0 6.5 34 138-173 1-34 (385)
492 PRK06183 mhpA 3-(3-hydroxyphen 92.9 0.2 4.4E-06 49.2 5.9 37 136-174 10-46 (538)
493 COG0240 GpsA Glycerol-3-phosph 92.9 0.4 8.7E-06 43.1 7.1 33 14-46 2-35 (329)
494 PRK02472 murD UDP-N-acetylmura 92.8 0.47 1E-05 45.4 8.2 83 136-242 5-87 (447)
495 PF01488 Shikimate_DH: Shikima 92.8 0.39 8.4E-06 37.6 6.3 74 135-233 11-85 (135)
496 PRK07608 ubiquinone biosynthes 92.8 0.27 5.9E-06 46.0 6.4 35 137-173 6-40 (388)
497 PRK07190 hypothetical protein; 92.8 0.22 4.8E-06 48.2 5.9 35 137-173 6-40 (487)
498 TIGR01320 mal_quin_oxido malat 92.8 0.16 3.5E-06 49.1 4.9 34 138-171 2-35 (483)
499 PRK06617 2-octaprenyl-6-methox 92.7 0.28 6E-06 45.8 6.3 32 138-171 3-34 (374)
500 PF01262 AlaDh_PNT_C: Alanine 92.7 0.14 3E-06 41.8 3.7 34 12-45 19-53 (168)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3e-55 Score=406.79 Aligned_cols=349 Identities=24% Similarity=0.315 Sum_probs=274.0
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------cc-------ccCC-----------ccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------RA-------MVEP-----------SFG 63 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------~~-------~~~~-----------~~~ 63 (369)
...||+||||+||||..||.+++ .|.+|+|||++..+|..+... .. .... .+.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 35799999999999999999986 488899999996565332111 00 0000 011
Q ss_pred ccceecccc------------cc--ccceEEEeeeeeeecceEEecC--CeEEeccEEEEccCCCCCCCC---ChHHHHH
Q 046865 64 ERSVINHTD------------YL--VNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPK---TRTERLN 124 (369)
Q Consensus 64 ~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~v~~~~--g~~~~~d~lviAtG~~~~~p~---~~~~~~~ 124 (369)
.......++ ++ .+++++.+++.++++++|...+ .+++++++++||||++|..|+ ++...+.
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~ 161 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARIL 161 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEE
Confidence 111111110 11 2689999999999999887765 489999999999999988775 3333333
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
+..........|++++|||||++|+|+|+.++ ..|.+||++++.+++||.+|+++++.+.+.|++.|+++++++.++.
T Consensus 162 ~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~--~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~ 239 (454)
T COG1249 162 DSSDALFLLELPKSLVIVGGGYIGLEFASVFA--ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239 (454)
T ss_pred echhhcccccCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence 34443344478999999999999999999998 4699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865 205 DSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282 (369)
Q Consensus 205 i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~ 282 (369)
++..++.+.+.+++|+ ++++|.+++|+|++||++.|..+.++++++++|+|.||.++|| +.|||||+|||++.+.
T Consensus 240 ~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~-- 316 (454)
T COG1249 240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPM-- 316 (454)
T ss_pred EEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcc--
Confidence 8876655778887776 7999999999999999998888888889999999999955555 7999999999998766
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCce--------EEcCccc-----ccccccc
Q 046865 283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPG 344 (369)
Q Consensus 283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~ 344 (369)
++|.|.+||++||+||+. +......+... .+|+++.||+++.++. ..+++.. ..+...|
T Consensus 317 Lah~A~~eg~iaa~~i~g---~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G 393 (454)
T COG1249 317 LAHVAMAEGRIAAENIAG---GKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDG 393 (454)
T ss_pred cHhHHHHHHHHHHHHHhC---CCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCce
Confidence 789999999999999984 11111111222 3699999999877763 3444432 4567889
Q ss_pred eecccccchHHHHHHcCCCCCccCC
Q 046865 345 LIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 345 ~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
|+|+ ++++++++|||+|++|.||
T Consensus 394 ~~Kl--v~d~~t~~IlGahivg~~A 416 (454)
T COG1249 394 FVKL--VVDKETGRILGAHIVGPGA 416 (454)
T ss_pred EEEE--EEECCCCeEEEEEEECCCH
Confidence 9999 9999999999999999986
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-50 Score=366.10 Aligned_cols=328 Identities=30% Similarity=0.390 Sum_probs=256.2
Q ss_pred CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccccceecccccc---ccceEEEeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL---VNGRIVASPAI 85 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (369)
++++|||||||++|+.+|..|.+ +.+|+|||+++++.+.+.........-.......++.+.+ .+++|++++++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 46899999999999999999964 4899999999998766443322222111122233333333 25899999999
Q ss_pred eeec--ceEEecCCeEEeccEEEEccCCCCCCCCCh--------HHHHHHHHHHH-------HHHh------cCCeEEEE
Q 046865 86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR--------TERLNQYQAEN-------QKIK------SARSILIV 142 (369)
Q Consensus 86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~--------~~~~~~~~~~~-------~~~~------~~~~v~vv 142 (369)
.+|. ++|.+.+++.+.||+||+|+|+.+..++++ ...+.+..++. +... ...+++|+
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv 161 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV 161 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence 9985 488888878899999999999996654432 11122221111 1111 22479999
Q ss_pred cCChhHHHHHHHHhhhCC-----------CCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC
Q 046865 143 GGGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS 211 (369)
Q Consensus 143 G~G~~g~e~a~~l~~~~~-----------~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 211 (369)
|||++|+|+|.+|.++.+ ..+|+|+++++++||.+++++++++++.|+++||++++++.|++++.+.
T Consensus 162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-- 239 (405)
T COG1252 162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-- 239 (405)
T ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc--
Confidence 999999999999987421 2499999999999999999999999999999999999999999997543
Q ss_pred eEEEcCCCc-EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc----cchhHH
Q 046865 212 DTYLTSTGD-TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE----IKQGFL 286 (369)
Q Consensus 212 ~~v~~~~g~-~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~----~~~~~~ 286 (369)
+++++|+ +|+++++|||+|.+++. ++... .+.+.|..|++.||++||+.++|||||+|||+..+. |+.++.
T Consensus 240 --v~~~~g~~~I~~~tvvWaaGv~a~~-~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~ 315 (405)
T COG1252 240 --VTLKDGEEEIPADTVVWAAGVRASP-LLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQA 315 (405)
T ss_pred --EEEccCCeeEecCEEEEcCCCcCCh-hhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHH
Confidence 6777777 49999999999999865 44431 234678889999999999999999999999997754 678999
Q ss_pred HHHHHHHHHHHHHHHhhCCCccccccccCCCcEEEEeecCCCceEEcCcccccccccceecc
Q 046865 287 AQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKS 348 (369)
Q Consensus 287 A~~~g~~~a~~i~~~~~g~~~~~~~~~~~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~ 348 (369)
|++||+++|+||.+.+.|++ +.+|.+.....++++|...|++...+..+.|...+++|.
T Consensus 316 A~Qqg~~~a~ni~~~l~g~~---l~~f~y~~~Gtl~~lG~~~av~~~g~~~l~G~~a~~~k~ 374 (405)
T COG1252 316 AHQQGEYAAKNIKARLKGKP---LKPFKYKDKGTLASLGDFSAVADLGGVKLKGFLAWLLKR 374 (405)
T ss_pred HHHHHHHHHHHHHHHhcCCC---CCCCcccceEEEEEccCCceeEEecceeeccHHHHHHHH
Confidence 99999999999999999965 456666678899999999999998766788887777663
No 3
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.5e-49 Score=379.53 Aligned_cols=349 Identities=22% Similarity=0.264 Sum_probs=262.7
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc---------------------cc----CCccc
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---------------------MV----EPSFG 63 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~---------------------~~----~~~~~ 63 (369)
...+|||+|||||+||++||..|+ .|++|+|||+++.+|..+..... +. .....
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 345799999999999999999986 59999999998766654321100 00 00000
Q ss_pred ccceecc------------ccc--cccceEEEeeeeeeecceE--EecCCe--EEeccEEEEccCCCCCCCCCh---HHH
Q 046865 64 ERSVINH------------TDY--LVNGRIVASPAINITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKTR---TER 122 (369)
Q Consensus 64 ~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v--~~~~g~--~~~~d~lviAtG~~~~~p~~~---~~~ 122 (369)
...+..+ ..+ ..+++++.+++.+++.+++ ...++. .+.||+||||||+.|..|+.. ...
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~ 161 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPR 161 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCe
Confidence 0000000 001 1257888999888887754 334553 799999999999998877532 222
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCcee
Q 046865 123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV 202 (369)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 202 (369)
+.+..........+++++|+|+|++|+|+|..|++ .+.+|+++++.+++++.+++++.+.+.+.++++||++++++.+
T Consensus 162 v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred EEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence 22233333333568999999999999999999984 4999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865 203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282 (369)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~ 282 (369)
++++.+++.+.+++.+|+++++|.+++|+|++||++.+.....++.++++|++.||+++|| +.|||||+|||++.+.
T Consensus 240 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~-- 316 (461)
T PRK05249 240 EKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPS-- 316 (461)
T ss_pred EEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcc--
Confidence 9987655556677778889999999999999999987655555667888999999999998 7999999999997544
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCccccccccC-----CCcEEEEeecCCCce--------EEcCcc-----cccccccc
Q 046865 283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYWP-----HSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPG 344 (369)
Q Consensus 283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~~-----~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~ 344 (369)
+++.|.+||+++|.||+ |.+....+...| .|+++.+|+++.++. ...++. ...+...|
T Consensus 317 ~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 392 (461)
T PRK05249 317 LASASMDQGRIAAQHAV----GEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVG 392 (461)
T ss_pred cHhHHHHHHHHHHHHHc----CCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCc
Confidence 68999999999999997 432211112222 479999999876553 222222 13466789
Q ss_pred eecccccchHHHHHHcCCCCCccCC
Q 046865 345 LIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 345 ~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
++|+ ++++++++|||+|++|.||
T Consensus 393 ~~kl--v~~~~~~~ilG~~~~g~~a 415 (461)
T PRK05249 393 MLKI--LFHRETLEILGVHCFGERA 415 (461)
T ss_pred EEEE--EEECCCCEEEEEEEECCCH
Confidence 9999 9999999999999999775
No 4
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=5.9e-50 Score=379.23 Aligned_cols=346 Identities=20% Similarity=0.213 Sum_probs=257.1
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc---cccc------------------c-cC----Ccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA---SLRA------------------M-VE----PSFGE 64 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~---~~~~------------------~-~~----~~~~~ 64 (369)
++|||+||||||||++||..|+ .|.+|+|||++. +|..+. .+.. + +. ..+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 3689999999999999999986 599999999964 443221 0000 0 00 00110
Q ss_pred cceecc------------cccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCC-CChHHHH-HHHHH
Q 046865 65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRTERL-NQYQA 128 (369)
Q Consensus 65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p-~~~~~~~-~~~~~ 128 (369)
.....+ ...+ .+++++.+++...+.++|.. +++.+.||+||||||++|..| +++.... .+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~ 158 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDG 158 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHH
Confidence 010000 0111 25788888888877777766 567899999999999998777 5442111 11122
Q ss_pred HHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC
Q 046865 129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS 208 (369)
Q Consensus 129 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 208 (369)
.......+++++|||+|++|+|+|..|+. .+.+|+++++.+++++.+++++.+.+++.|+++||++++++.+.+++.+
T Consensus 159 ~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 159 FFALEELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKT 236 (450)
T ss_pred hhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEe
Confidence 22222357999999999999999999984 5899999999999999999999999999999999999999999998754
Q ss_pred CCC-eEEEcCCC-cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865 209 EGS-DTYLTSTG-DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL 286 (369)
Q Consensus 209 ~~~-~~v~~~~g-~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~ 286 (369)
++. +.+.+++| +++++|.||+|+|++||++++....++++++++|+|.||+++|| +.|||||+|||++.+. .++.
T Consensus 237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~--~~~~ 313 (450)
T TIGR01421 237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVE--LTPV 313 (450)
T ss_pred CCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcc--cHHH
Confidence 333 56677777 57999999999999999997765666667888999999999998 7999999999997654 6789
Q ss_pred HHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceEEc----------Cccc-----ccccccce
Q 046865 287 AQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVAQL----------PFMT-----TIGCVPGL 345 (369)
Q Consensus 287 A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~~-----~~g~~~~~ 345 (369)
|.+||+++|+||+. +....+ .+... ..|+++.+|+++.+|...+ ++.. ..+...++
T Consensus 314 A~~~g~~aa~~i~~---~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 390 (450)
T TIGR01421 314 AIAAGRKLSERLFN---GKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCR 390 (450)
T ss_pred HHHHHHHHHHHHhc---CCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceE
Confidence 99999999999972 111110 01111 2589999999887664321 1111 13667899
Q ss_pred ecccccchHHHHHHcCCCCCccCC
Q 046865 346 IKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 346 ~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+|+ ++++++++|||+|++|.||
T Consensus 391 ~kl--v~~~~~~~ilG~~~~g~~a 412 (450)
T TIGR01421 391 MKL--VCAGKEEKVVGLHGIGDGV 412 (450)
T ss_pred EEE--EEECCCCEEEEEEEECCCH
Confidence 999 9999999999999999775
No 5
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.8e-49 Score=377.98 Aligned_cols=350 Identities=20% Similarity=0.211 Sum_probs=258.4
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC---------CCccccccc--------c----------cc---c
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITWAS--------L----------RA---M 57 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~---------~~~~~~~~~--------~----------~~---~ 57 (369)
+...+|||+||||||||+.||.++. .|.+|+|||++ +.+|..+.. + .. +
T Consensus 21 ~~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 21 ATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhc
Confidence 3345799999999999999999986 59999999962 334433211 1 00 0
Q ss_pred -cC----Ccccccceecc------------ccc--cccceEEEeeeeeeecce--EEecCCe--EEeccEEEEccCCCCC
Q 046865 58 -VE----PSFGERSVINH------------TDY--LVNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDP 114 (369)
Q Consensus 58 -~~----~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~--v~~~~g~--~~~~d~lviAtG~~~~ 114 (369)
.. ..+....+... ... ..+++++++++.++++++ |.+.+|+ ++.||+||||||++|.
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 00 01111111101 001 136889999999999874 4445664 5899999999999987
Q ss_pred CCCChHHH-HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCC
Q 046865 115 VPKTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193 (369)
Q Consensus 115 ~p~~~~~~-~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~g 193 (369)
.|+++... ..+..........+++++|+|+|++|+|+|..|.. .+.+|+++++.+++++.+++++.+.+.+.|+++|
T Consensus 181 ~p~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 258 (499)
T PLN02507 181 RPNIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLRGFDDEMRAVVARNLEGRG 258 (499)
T ss_pred CCCCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCC
Confidence 66554211 11222222223457899999999999999999874 5899999999999999999999999999999999
Q ss_pred cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865 194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG 273 (369)
Q Consensus 194 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G 273 (369)
|++++++.|.+++.+++.+.+.+.+|+++++|.+++++|++||++++.....+++++++|+|.||+++|| +.|||||+|
T Consensus 259 I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiG 337 (499)
T PLN02507 259 INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIG 337 (499)
T ss_pred CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEee
Confidence 9999999999987655566777778889999999999999999988655555557788899999999998 899999999
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcc-ccccccC-----CCcEEEEeecCCCceEE---------cCccc-
Q 046865 274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGERES-KMATYWP-----HSAIAIVSLGRKDAVAQ---------LPFMT- 337 (369)
Q Consensus 274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-~~~~~~~-----~~~~~~v~lg~~~~~~~---------~~~~~- 337 (369)
||++.+. +++.|.+||+++|+||+ +.... ..+...| .|+++.+|+++.+|... .++..
T Consensus 338 Dv~~~~~--l~~~A~~qg~~aa~ni~----g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~ 411 (499)
T PLN02507 338 DVTNRIN--LTPVALMEGTCFAKTVF----GGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPM 411 (499)
T ss_pred EcCCCCc--cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCcc
Confidence 9997643 68999999999999997 32211 1111112 47899999987655432 12211
Q ss_pred ----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865 338 ----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 338 ----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
..+...+++|+ ++++++++|||+|++|.||
T Consensus 412 ~~~~~~~~~~g~~Kl--i~d~~t~~ilG~~~vg~~a 445 (499)
T PLN02507 412 KNTISGRQEKTVMKL--IVDAETDKVLGASMCGPDA 445 (499)
T ss_pred ccccccCCCCEEEEE--EEECCCCEEEEEEEECCCH
Confidence 12245789998 9999999999999999775
No 6
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.7e-49 Score=376.84 Aligned_cols=346 Identities=18% Similarity=0.243 Sum_probs=257.6
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------ccc----------c----c---CCccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------LRA----------M----V---EPSFGER 65 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~~~----------~----~---~~~~~~~ 65 (369)
.+|||+||||||||++||..|+ .|.+|+|||+++.+|..+.. +.. . + ...+...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 4699999999999999999987 59999999998666543211 000 0 0 0001111
Q ss_pred ceeccc------------ccc--ccceEEEeeeeeeecceEEe--cCC--eEEeccEEEEccCCCCC-CCCChH--HHHH
Q 046865 66 SVINHT------------DYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP-VPKTRT--ERLN 124 (369)
Q Consensus 66 ~~~~~~------------~~~--~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~-~p~~~~--~~~~ 124 (369)
.+..+. ..+ .+++++++.+.+++++++.. .+| .++.||+||||||++|. .|..+. ..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~ 162 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW 162 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEE
Confidence 111111 001 26889999999999886544 345 47999999999999986 443321 1122
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
+..........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+++.|+++ |++++++.++.
T Consensus 163 ~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 163 DSTDALELKEVPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred ChHHhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 222222333457999999999999999999984 599999999999999999999999999999988 99999999998
Q ss_pred ccCCCCCeEEEcCC--C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc
Q 046865 205 DSVSEGSDTYLTST--G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE 280 (369)
Q Consensus 205 i~~~~~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~ 280 (369)
++..++.+.+.+.+ + +++++|.+|+|+|++||++++.....++.++++|+|.||++||| +.|+|||+|||++.+.
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~ 318 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM 318 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc
Confidence 87655555565443 2 36999999999999999987766666668889999999999998 7999999999997544
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCce--------EEcCcc-----cccccc
Q 046865 281 IKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCV 342 (369)
Q Consensus 281 ~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~ 342 (369)
+++.|.+||+++|.||+ |.......... ..|+++.+|+++.++. ..+++. ...+..
T Consensus 319 --la~~A~~eG~~aa~~i~----g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~ 392 (471)
T PRK06467 319 --LAHKGVHEGHVAAEVIA----GKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCA 392 (471)
T ss_pred --cHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCC
Confidence 78999999999999997 32211111111 2589999999876653 233322 134667
Q ss_pred cceecccccchHHHHHHcCCCCCccCC
Q 046865 343 PGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 343 ~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
.|++|+ ++++++++|||+|++|.||
T Consensus 393 ~g~~kl--i~d~~t~~ilG~~~vg~~a 417 (471)
T PRK06467 393 DGMTKL--IFDKETHRVLGGAIVGTNA 417 (471)
T ss_pred ceEEEE--EEECCCCeEEEEEEECCCH
Confidence 899999 9999999999999999875
No 7
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.9e-49 Score=376.04 Aligned_cols=345 Identities=23% Similarity=0.276 Sum_probs=259.3
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------cc----c-cC---Ccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RA----M-VE---PSFGE 64 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~----~-~~---~~~~~ 64 (369)
.+|||+||||||||++||..|+ .|++|+|||++ .+|..+... .. + +. +.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 3689999999999999999987 59999999986 344321110 00 0 00 00110
Q ss_pred cceecc------------cccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHHH-HHHHHHH
Q 046865 65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER-LNQYQAE 129 (369)
Q Consensus 65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~-~~~~~~~ 129 (369)
..+... ...+ .+++++.+++.+++.++|.+ +++++.||+||||||+.|..|+++... ..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~ 160 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGF 160 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHh
Confidence 000000 0011 36889999999999888887 678899999999999998877654311 1112222
Q ss_pred HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE 209 (369)
Q Consensus 130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~ 209 (369)
......+++++|+|+|++|+|+|..|.+ .+.+|+++++++++++.+++++.+.+.+.|++.||++++++.|.+++.++
T Consensus 161 ~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~ 238 (450)
T PRK06116 161 FALEELPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238 (450)
T ss_pred hCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcC
Confidence 2223457899999999999999999874 48999999999999999999999999999999999999999999987654
Q ss_pred CC-eEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHH
Q 046865 210 GS-DTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ 288 (369)
Q Consensus 210 ~~-~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~ 288 (369)
+. +.+.+.+|+++++|.+|+|+|++|+++.+.....++.++++|+|.||+++|| +.|||||+|||++.+ ++++.|.
T Consensus 239 ~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~~~~~A~ 315 (450)
T PRK06116 239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRV--ELTPVAI 315 (450)
T ss_pred CceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCc--CcHHHHH
Confidence 43 6677788889999999999999999987655555567888999999999998 799999999999754 3688999
Q ss_pred HHHHHHHHHHHHHhhCCCc-c-ccccccC-----CCcEEEEeecCCCceEE----------cCccc-----cccccccee
Q 046865 289 KHAQVAAKNLKVLMVGERE-S-KMATYWP-----HSAIAIVSLGRKDAVAQ----------LPFMT-----TIGCVPGLI 346 (369)
Q Consensus 289 ~~g~~~a~~i~~~~~g~~~-~-~~~~~~~-----~~~~~~v~lg~~~~~~~----------~~~~~-----~~g~~~~~~ 346 (369)
+||+++|+||+ |... . ..+...| .|+++.+|+++.++... .++.. ..+...|++
T Consensus 316 ~~g~~aa~~i~----g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 391 (450)
T PRK06116 316 AAGRRLSERLF----NNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLM 391 (450)
T ss_pred HHHHHHHHHHh----CCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEE
Confidence 99999999997 3221 1 1111222 58999999987655332 12211 235678999
Q ss_pred cccccchHHHHHHcCCCCCccCC
Q 046865 347 KSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 347 k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
|+ ++++++++|||+|++|.||
T Consensus 392 kl--v~~~~~~~ilG~~~~g~~a 412 (450)
T PRK06116 392 KL--VVVGKEEKVVGLHGIGFGA 412 (450)
T ss_pred EE--EEECCCCEEEEEEEECCCH
Confidence 99 9999999999999999764
No 8
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4e-49 Score=373.36 Aligned_cols=346 Identities=23% Similarity=0.299 Sum_probs=258.0
Q ss_pred cceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcccc--------cccc----------cc---c-cC---Ccccccc-
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEIT--------WASL----------RA---M-VE---PSFGERS- 66 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~--------~~~~----------~~---~-~~---~~~~~~~- 66 (369)
+|||||||||++|.+||.++ .|.+|+|||++. +|.. ...+ .. + +. ..+....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 48999999999999999775 499999999864 3321 1100 00 0 00 0111000
Q ss_pred ----------eec--cccc---cccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH---HHHHHHHH
Q 046865 67 ----------VIN--HTDY---LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---ERLNQYQA 128 (369)
Q Consensus 67 ----------~~~--~~~~---~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---~~~~~~~~ 128 (369)
+.. ...+ ..+++++.+++.++++++|.+.+++++.||+||||||++|..|+++. ..+.+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~ 158 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT 158 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence 000 0111 13688999999999999998888888999999999999988776542 11222233
Q ss_pred HHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC
Q 046865 129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS 208 (369)
Q Consensus 129 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 208 (369)
.......+++++|+|+|++|+|+|..|.+ .+.+|+++++++++++.+++++.+.+.+.+ +.+|++++++.+.+++.+
T Consensus 159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 159 IMRLPELPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence 33333458999999999999999999984 599999999999999999999998887655 568999999999998765
Q ss_pred CCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHH
Q 046865 209 EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ 288 (369)
Q Consensus 209 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~ 288 (369)
++.+.+.+.+|+++++|.+++|+|++||++++....++++++++|+|.||+++|| +.|||||+|||++.+. +++.|.
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~--l~~~A~ 312 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQ--LKHVAN 312 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCcc--ChhHHH
Confidence 5556677778889999999999999999998766556667888999999999997 7999999999998654 689999
Q ss_pred HHHHHHHHHHHHHhhCC--Cc--cccccccCCCcEEEEeecCCCce--------EEcCccc-----ccccccceeccccc
Q 046865 289 KHAQVAAKNLKVLMVGE--RE--SKMATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLIKSRDL 351 (369)
Q Consensus 289 ~~g~~~a~~i~~~~~g~--~~--~~~~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~k~~~~ 351 (369)
+||+++|+||+...... .. .+...| ..|+++.+|+++.++. ..+++.. ..+...+++|+ +
T Consensus 313 ~~g~~~a~ni~~~~~~~~~~~~~~p~~if-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i 389 (451)
T PRK07846 313 HEARVVQHNLLHPDDLIASDHRFVPAAVF-THPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKL--I 389 (451)
T ss_pred HHHHHHHHHHcCCCCccccCCCCCCeEEE-CCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEE--E
Confidence 99999999997321000 00 011112 2589999999877663 2222221 24566899999 9
Q ss_pred chHHHHHHcCCCCCccCC
Q 046865 352 FVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 352 ~~~~~~~ilG~~~~~~~~ 369 (369)
+++++++|||+|++|.||
T Consensus 390 ~d~~~~~ilG~~~~g~~a 407 (451)
T PRK07846 390 ADRDTGRLLGAHIIGPQA 407 (451)
T ss_pred EECCCCEEEEEEEECCCH
Confidence 999999999999999775
No 9
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.5e-49 Score=374.39 Aligned_cols=345 Identities=21% Similarity=0.215 Sum_probs=257.2
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------c----------cc---c-c--C-Ccccccc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------L----------RA---M-V--E-PSFGERS 66 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~----------~~---~-~--~-~~~~~~~ 66 (369)
+|||+||||||||++||..++ .|++|+|||++ .+|..+.. + .. + . . ..+....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999986 59999999985 45533211 0 00 0 0 0 0000000
Q ss_pred ee--------cc----cccc--ccceEEEeeeeeeecceEEe-cCCeEEeccEEEEccCCCCCCCCChHHHH-HHHHHHH
Q 046865 67 VI--------NH----TDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRTERL-NQYQAEN 130 (369)
Q Consensus 67 ~~--------~~----~~~~--~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~p~~~~~~~-~~~~~~~ 130 (369)
.. .. ...+ .+++++.+++..++++++.. .+++.+.||+||||||++|..|+++.... .+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~ 160 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF 160 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence 00 00 0111 26789999999998875543 45678999999999999988776542211 1122222
Q ss_pred HHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC
Q 046865 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG 210 (369)
Q Consensus 131 ~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~ 210 (369)
.....+++++|+|+|++|+|+|..+.. .+.+|+++++++++++.+++++.+.+.+.|+++||++++++.+.+++.+++
T Consensus 161 ~l~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 161 HLPTLPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 222457899999999999999999874 589999999999999999999999999999999999999999998875555
Q ss_pred CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHH
Q 046865 211 SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKH 290 (369)
Q Consensus 211 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~ 290 (369)
...+.+.+|+++++|.+|+|+|++||++.+.....+++++++|+|.||+++|| +.|||||+|||++.+ .+++.|.+|
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~l~~~A~~~ 315 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRI--NLTPVAIME 315 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCc--cchhHHHHH
Confidence 56677778889999999999999999987655555667788899999999998 799999999999754 378999999
Q ss_pred HHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceEE---------cCccc-----ccccccceecccc
Q 046865 291 AQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVAQ---------LPFMT-----TIGCVPGLIKSRD 350 (369)
Q Consensus 291 g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~~---------~~~~~-----~~g~~~~~~k~~~ 350 (369)
|+++|+||+ +....+ .+... ..|+++.+|++++++... .++.. ..+...+++|+
T Consensus 316 g~~~a~~i~----~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl-- 389 (446)
T TIGR01424 316 ATCFANTEF----GNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKL-- 389 (446)
T ss_pred HHHHHHHHh----cCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEE--
Confidence 999999997 322111 11111 258999999987655432 11111 24566799999
Q ss_pred cchHHHHHHcCCCCCccCC
Q 046865 351 LFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 351 ~~~~~~~~ilG~~~~~~~~ 369 (369)
++++++++|||+|++|.||
T Consensus 390 i~d~~~~~ilG~~~~g~~a 408 (446)
T TIGR01424 390 VVDEKDDKVLGAHMVGPDA 408 (446)
T ss_pred EEeCCCCEEEEEEEECCCH
Confidence 9999999999999999775
No 10
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.6e-49 Score=374.92 Aligned_cols=349 Identities=20% Similarity=0.177 Sum_probs=257.6
Q ss_pred CcceEEEECCChHHHHHHHHccc--CCcEEEEcCC--------CCcccccc--------cc----------cc---c-c-
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPK--------EYFEITWA--------SL----------RA---M-V- 58 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~--------~~~~~~~~--------~~----------~~---~-~- 58 (369)
.+|||+|||||+||+.||.++++ |.+|+|||++ +.+|..+. .+ +. + +
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 46999999999999999998864 7999999974 34543211 00 00 0 0
Q ss_pred ----CCcccccceecc------------cccc---ccceEEEeeeeeeecceEEecC--------CeEEeccEEEEccCC
Q 046865 59 ----EPSFGERSVINH------------TDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH 111 (369)
Q Consensus 59 ----~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~~~~v~~~~--------g~~~~~d~lviAtG~ 111 (369)
...+.......+ ...+ .+++++++++.++++++|...+ .++++||+||||||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 000111011111 1112 3689999999999988776532 257999999999999
Q ss_pred CCCCCCChHH-HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCccccccCCcchHHHHHHHH
Q 046865 112 KDPVPKTRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189 (369)
Q Consensus 112 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l 189 (369)
+|..|+++.. ...+..........+++++|||+|++|+|+|..+... ..+.+|+++++.+++++.+++++.+.+.+.|
T Consensus 162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L 241 (486)
T TIGR01423 162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241 (486)
T ss_pred CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence 9887766432 1222222222224579999999999999999877532 1389999999999999999999999999999
Q ss_pred HhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCC
Q 046865 190 ISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKN 268 (369)
Q Consensus 190 ~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~ 268 (369)
+++||++++++.+.+++.+++ ...+.+.+|+++++|.+|+|+|++|+++++....++++++++|+|.||+++|| +.||
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~ 320 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN 320 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence 999999999999998875433 35667777889999999999999999988766556667888999999999998 7999
Q ss_pred eEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccc-cccccC-----CCcEEEEeecCCCceEEc--------C
Q 046865 269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATYWP-----HSAIAIVSLGRKDAVAQL--------P 334 (369)
Q Consensus 269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~~~-----~~~~~~v~lg~~~~~~~~--------~ 334 (369)
|||+|||++.+. +++.|.+||+++|+||+ |....+ .+...| .|+++.+|+++.+|.... +
T Consensus 321 IyA~GDv~~~~~--l~~~A~~qG~~aa~ni~----g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~~~~ 394 (486)
T TIGR01423 321 IYAIGDVTDRVM--LTPVAINEGAAFVDTVF----GNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESS 394 (486)
T ss_pred EEEeeecCCCcc--cHHHHHHHHHHHHHHHh----CCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEEEEe
Confidence 999999997654 78999999999999997 322111 111112 489999999887664321 1
Q ss_pred ccc----cccc--ccceecccccchHHHHHHcCCCCCccCC
Q 046865 335 FMT----TIGC--VPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 335 ~~~----~~g~--~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+.. ..+. ..+++|+ ++++++++|||+|++|.||
T Consensus 395 ~~~~~~~~~~~~~~~g~~Kl--v~d~~~~~iLGa~ivg~~a 433 (486)
T TIGR01423 395 FTPLMHNISGSKYKKFVAKI--VTNHADGTVLGVHLLGDSS 433 (486)
T ss_pred eCchhhhhccCccCceEEEE--EEECCCCEEEEEEEECCCH
Confidence 111 1122 2589998 9999999999999999875
No 11
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=2e-48 Score=369.01 Aligned_cols=343 Identities=22% Similarity=0.289 Sum_probs=257.2
Q ss_pred cceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcccc--------ccccc-------------cc-cC---Ccccc---
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEIT--------WASLR-------------AM-VE---PSFGE--- 64 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~--------~~~~~-------------~~-~~---~~~~~--- 64 (369)
+|||||||+|+||+.||..+ .|.+|+|||++. +|.. ...+. .+ +. ..+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 69999999999999997665 499999999864 3321 11000 00 00 00100
Q ss_pred -----c----ceec--ccccc----ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH-H--HHHHH
Q 046865 65 -----R----SVIN--HTDYL----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-E--RLNQY 126 (369)
Q Consensus 65 -----~----~~~~--~~~~~----~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~-~--~~~~~ 126 (369)
. .... ..... .+++++.+++.+.+.++|.+.++++++||+||||||++|..|+... . .+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~ 159 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTN 159 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcH
Confidence 0 0000 00111 4789999999999988888888888999999999999998876321 1 12222
Q ss_pred HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206 (369)
Q Consensus 127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 206 (369)
.........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+.+.++ .+|++++++.|.+++
T Consensus 160 ~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~ 236 (452)
T TIGR03452 160 EDIMRLPELPESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAVE 236 (452)
T ss_pred HHHHhhhhcCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEEE
Confidence 3333333458999999999999999999974 5899999999999999899999988877554 689999999999987
Q ss_pred CCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL 286 (369)
Q Consensus 207 ~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~ 286 (369)
.+++.+.+++.+|+++++|.+++++|++||++++.....+++++++|+|.||+++|| +.|+|||+|||++.+ ++++.
T Consensus 237 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~l~~~ 313 (452)
T TIGR03452 237 QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPY--QLKHV 313 (452)
T ss_pred EcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcc--cChhH
Confidence 655566677778889999999999999999998766655667888999999999997 799999999999764 46899
Q ss_pred HHHHHHHHHHHHHHHhhCCCc--ccccccc-----CCCcEEEEeecCCCce--------EEcCcc-----ccccccccee
Q 046865 287 AQKHAQVAAKNLKVLMVGERE--SKMATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLI 346 (369)
Q Consensus 287 A~~~g~~~a~~i~~~~~g~~~--~~~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~ 346 (369)
|.+||+++|+||.. ... ...+... ..|+++.+|+++.++. ...++. ...+...+++
T Consensus 314 A~~~g~~~a~ni~~----~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (452)
T TIGR03452 314 ANAEARVVKHNLLH----PNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFC 389 (452)
T ss_pred HHHHHHHHHHHhcC----CCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEE
Confidence 99999999999973 211 1111122 3689999999877663 222222 1246678999
Q ss_pred cccccchHHHHHHcCCCCCccCC
Q 046865 347 KSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 347 k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
|+ ++++++++|||+|++|.||
T Consensus 390 Kl--v~d~~t~~ilG~~~vg~~a 410 (452)
T TIGR03452 390 KL--IADRDTGKLLGAHIIGPQA 410 (452)
T ss_pred EE--EEECCCCEEEEEEEECCCH
Confidence 99 9999999999999999875
No 12
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-48 Score=370.11 Aligned_cols=345 Identities=21% Similarity=0.272 Sum_probs=256.4
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC-ccccccccccc-----c-----CCcccc-----cceec-c----
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAM-----V-----EPSFGE-----RSVIN-H---- 70 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~-~~~~~~~~~~~-----~-----~~~~~~-----~~~~~-~---- 70 (369)
+|||||||||+||++||..|+ .|++|+|||+++. +|..+...... . ..++.. +.... .
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999986 5999999999763 55433211000 0 001100 00000 0
Q ss_pred -cc--ccccceEEEeeeeeeecceE--EecCCe-EEeccEEEEccCCCCCCCCChHH----HHHHHHHHHHHHhcCCeEE
Q 046865 71 -TD--YLVNGRIVASPAINITENEV--LTAEGR-RVVYDYLVIATGHKDPVPKTRTE----RLNQYQAENQKIKSARSIL 140 (369)
Q Consensus 71 -~~--~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~d~lviAtG~~~~~p~~~~~----~~~~~~~~~~~~~~~~~v~ 140 (369)
.. ...+++++.+++.+++.+.+ ...++. ++.||+||+|||++|..|+++.. .+.+..........+++++
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ 162 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG 162 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence 01 11368899999999987744 444664 69999999999999876654321 1222222333334678999
Q ss_pred EEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc
Q 046865 141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD 220 (369)
Q Consensus 141 vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~ 220 (369)
|+|+|++|+|+|..|.+ .+.+|+++++++++++.+++++.+.+.+.|+++||++++++.+.+++.+++.+.+.++++
T Consensus 163 ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g- 239 (441)
T PRK08010 163 ILGGGYIGVEFASMFAN--FGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA- 239 (441)
T ss_pred EECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence 99999999999999984 499999999999999988999999999999999999999999999876555555665555
Q ss_pred EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHH
Q 046865 221 TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300 (369)
Q Consensus 221 ~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~ 300 (369)
++++|.+++|+|++||++++.....++.++++|+|.||+++|| +.|||||+|||++.+ ++++.|..||++++.||+
T Consensus 240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~- 315 (441)
T PRK08010 240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGL--QFTYISLDDYRIVRDELL- 315 (441)
T ss_pred eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHc-
Confidence 6999999999999999987665555667788899999999998 799999999999865 468999999999999997
Q ss_pred HhhCCCcccccc--cc-----CCCcEEEEeecCCCce--------EEcCcc-----cccccccceecccccchHHHHHHc
Q 046865 301 LMVGERESKMAT--YW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKSRDLFVGKTRKQM 360 (369)
Q Consensus 301 ~~~g~~~~~~~~--~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~~~~~~~~~~~il 360 (369)
|........ .. .+|+++.+|++++++. ..+++. ...+...+++|+ ++++++++||
T Consensus 316 ---g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~il 390 (441)
T PRK08010 316 ---GEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKA--IVDNKTQRIL 390 (441)
T ss_pred ---CCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEE--EEECCCCEEE
Confidence 321110101 11 2689999999876653 222221 134556789998 9999999999
Q ss_pred CCCCCccCC
Q 046865 361 GLEPDVAHA 369 (369)
Q Consensus 361 G~~~~~~~~ 369 (369)
|+|++|.||
T Consensus 391 G~~~~g~~a 399 (441)
T PRK08010 391 GASLLCVDS 399 (441)
T ss_pred EEEEECCCH
Confidence 999999775
No 13
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=5.9e-47 Score=356.64 Aligned_cols=326 Identities=24% Similarity=0.267 Sum_probs=248.3
Q ss_pred CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEeeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVASPAINI 87 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (369)
.+++|||||||+||+.+|+.|.+ +.+|+|||+++++.+.+... ........ .....+....+ .+++|+.++++.+
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLP-QTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHH-HhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 35799999999999999999964 68999999999887653322 22221111 11111222222 2578999999999
Q ss_pred ecc--eEEe----------cCCeEEeccEEEEccCCCCCCCCChHH--------HHHHHHHHHHH---------------
Q 046865 88 TEN--EVLT----------AEGRRVVYDYLVIATGHKDPVPKTRTE--------RLNQYQAENQK--------------- 132 (369)
Q Consensus 88 ~~~--~v~~----------~~g~~~~~d~lviAtG~~~~~p~~~~~--------~~~~~~~~~~~--------------- 132 (369)
|.. .+.+ .++.++.||+||||||+.+..|+++.. .+.+.....+.
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 167 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV 167 (424)
T ss_pred EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 854 5655 456789999999999999764433211 11111111111
Q ss_pred --HhcCCeEEEEcCChhHHHHHHHHhhhC------------CCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865 133 --IKSARSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL 198 (369)
Q Consensus 133 --~~~~~~v~vvG~G~~g~e~a~~l~~~~------------~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~ 198 (369)
....++++|||+|++|+|+|.+|.+.+ .+.+|+++++++++++.+++++.+.+++.|+++||++++
T Consensus 168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~ 247 (424)
T PTZ00318 168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT 247 (424)
T ss_pred HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 112258999999999999999987532 468999999999999999999999999999999999999
Q ss_pred CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865 199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI 278 (369)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~ 278 (369)
+++|.+++.+ .+++++|+++++|.+||++|.+|+ +++...+ ++++++|+|.||++||++++|||||+|||+..
T Consensus 248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~--l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLK--VDKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcC--CcccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence 9999988632 366788999999999999999997 4555444 36778899999999997789999999999975
Q ss_pred c---ccchhHHHHHHHHHHHHHHHHHhhCCCccccccccCCCcEEEEeecCCCceEEcCcccccccccceec
Q 046865 279 R---EIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIK 347 (369)
Q Consensus 279 ~---~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k 347 (369)
+ .++++..|++||+++|+||.+.+.|++ ...+|.+.....++++|...++++..++.+.|+..+++|
T Consensus 321 ~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~--~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~g~~a~~~~ 390 (424)
T PTZ00318 321 EERPLPTLAQVASQQGVYLAKEFNNELKGKP--MSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALLFW 390 (424)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhcCCC--CCCCCeecCCceEEEecCCceEEEcCCceEecHHHHHHH
Confidence 2 356789999999999999999998864 234555555567899999999999888888888777765
No 14
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.4e-47 Score=362.41 Aligned_cols=340 Identities=16% Similarity=0.268 Sum_probs=253.4
Q ss_pred ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccc-cceecc--cccc--ccceEE-Eeee
Q 046865 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINH--TDYL--VNGRIV-ASPA 84 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~-~~~~ 84 (369)
++|||||||+||++||.+|++ +.+|+|||+++++.+....+.......... .....+ ..+. .++++. ..++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 489999999999999998863 689999999998776544433332221111 111111 1221 256764 4678
Q ss_pred eeeecc--eEEecCC---e--EEeccEEEEccCCCCCCCCChHH------HHHHHHHHHHHH--hcCCeEEEEcCChhHH
Q 046865 85 INITEN--EVLTAEG---R--RVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKI--KSARSILIVGGGPTGV 149 (369)
Q Consensus 85 ~~~~~~--~v~~~~g---~--~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~~~--~~~~~v~vvG~G~~g~ 149 (369)
..+|.. +|.+.++ . ++.||+||||||+.|..|+++.. .+.+.....+.. ..+++++|+|+|++|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 888754 5655432 2 47999999999999988875421 122333222221 2478999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEE
Q 046865 150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFL 229 (369)
Q Consensus 150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~ 229 (369)
|+|..|.+ .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+.+++. ..+++++|+++++|.+++
T Consensus 162 E~A~~l~~--~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v~~~~g~~~~~D~vl~ 235 (438)
T PRK13512 162 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVEHYDMIIE 235 (438)
T ss_pred HHHHHHHh--CCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEEEECCCCEEEeCEEEE
Confidence 99999974 589999999999999999999999999999999999999999998853 246667788999999999
Q ss_pred cCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc--------ccchhHHHHHHHHHHHHHHHHH
Q 046865 230 CTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR--------EIKQGFLAQKHAQVAAKNLKVL 301 (369)
Q Consensus 230 a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--------~~~~~~~A~~~g~~~a~~i~~~ 301 (369)
|+|++||++++...++ .++++|+|.||+++|| ++|||||+|||++.+ ..++++.|.+||+++|+||+
T Consensus 236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~-- 310 (438)
T PRK13512 236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA-- 310 (438)
T ss_pred CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc--
Confidence 9999999998866544 6778899999999998 799999999998632 23567889999999999997
Q ss_pred hhCCCccccccc-------cCCCcEEEEeecCCCceE------EcCcc----cccccccceecccccchHHHHHHcCCCC
Q 046865 302 MVGERESKMATY-------WPHSAIAIVSLGRKDAVA------QLPFM----TTIGCVPGLIKSRDLFVGKTRKQMGLEP 364 (369)
Q Consensus 302 ~~g~~~~~~~~~-------~~~~~~~~v~lg~~~~~~------~~~~~----~~~g~~~~~~k~~~~~~~~~~~ilG~~~ 364 (369)
|.+......+ ..+|+++.+|+++.++.. .+++. ...+...|++|+ ++++++++|||+|+
T Consensus 311 --g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--v~d~~~~~ilGa~~ 386 (438)
T PRK13512 311 --GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV--YYDTSNRKILRAAA 386 (438)
T ss_pred --CCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEE--EEECCCCeEEEEEE
Confidence 4321111011 135899999998776542 11111 124667889998 99999999999999
Q ss_pred CccC
Q 046865 365 DVAH 368 (369)
Q Consensus 365 ~~~~ 368 (369)
+|.|
T Consensus 387 ~g~~ 390 (438)
T PRK13512 387 VGKE 390 (438)
T ss_pred Eccc
Confidence 9987
No 15
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.1e-48 Score=370.05 Aligned_cols=351 Identities=20% Similarity=0.228 Sum_probs=255.2
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc---c-----------------c--cC----Ccc
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---A-----------------M--VE----PSF 62 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~---~-----------------~--~~----~~~ 62 (369)
+..+||||||||||||++||..|+ .|++|+|||+.. +|..+.... . . +. ...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 345699999999999999999987 599999999864 332211100 0 0 00 011
Q ss_pred ccccee------------cccccc---ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHH---HHH
Q 046865 63 GERSVI------------NHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---RLN 124 (369)
Q Consensus 63 ~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~---~~~ 124 (369)
....+. ....++ .+++++.++..+++.+++.+ +++++.||+||||||++|..|+++.. .+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceE
Confidence 110000 011111 26888888888888887776 46789999999999999887765421 122
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
+..........+++++|+|+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.|.+
T Consensus 160 ~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 160 TNETIFSLDELPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 222222223457999999999999999999984 489999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEc--C-CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865 205 DSVSEGSDTYLT--S-TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI 281 (369)
Q Consensus 205 i~~~~~~~~v~~--~-~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~ 281 (369)
++.+++...+.+ . +++++++|.||+|+|++||++.+.....++.++++|+|.||++||| +.|||||+|||++.+
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~-- 314 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRG-- 314 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCc--
Confidence 876554444433 2 3457999999999999999985543444557788999999999998 799999999999764
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCCCccccccc--cCCCcEEEEeecCCCce--------EEcCccc-----cccccccee
Q 046865 282 KQGFLAQKHAQVAAKNLKVLMVGERESKMATY--WPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLI 346 (369)
Q Consensus 282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~--~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~ 346 (369)
++++.|.+||+++|+||+............++ ...|+++.+|+++.++. ..+++.. ..+...+++
T Consensus 315 ~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 394 (463)
T PRK06370 315 AFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFM 394 (463)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEE
Confidence 46889999999999999732100000001111 12589999999876553 2222221 256678999
Q ss_pred cccccchHHHHHHcCCCCCccCC
Q 046865 347 KSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 347 k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
|+ ++++++++|||+|++|.||
T Consensus 395 kl--i~d~~~~~ilG~~~~g~~a 415 (463)
T PRK06370 395 KV--VVDADTDRILGATILGVHG 415 (463)
T ss_pred EE--EEECCCCEEEEEEEECCCH
Confidence 99 9999999999999999875
No 16
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.1e-48 Score=367.34 Aligned_cols=346 Identities=20% Similarity=0.226 Sum_probs=256.1
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc------------------c--cc-----CCcccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR------------------A--MV-----EPSFGE 64 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~------------------~--~~-----~~~~~~ 64 (369)
..++||+|||||+||+++|..|+ .|.+|+|||+++.+|..|.... . +. .+.+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 45799999999999999999997 4999999999866665432110 0 00 011110
Q ss_pred ccee-------------cccccc---ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCCCCCChHH---
Q 046865 65 RSVI-------------NHTDYL---VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDPVPKTRTE--- 121 (369)
Q Consensus 65 ~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~~p~~~~~--- 121 (369)
.... .+...+ .+++++++.+.+.+.+++. ..++ .++.||+||||||+.|..|+++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 173 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDT 173 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCcc
Confidence 0000 011111 2578899999999887543 3455 369999999999999887765421
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR 201 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~ 201 (369)
...+..........+++++|||+|++|+|+|..|.+ .+.+|+++++. ++++.+++++.+.+++.|++.||+++++++
T Consensus 174 ~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~ 250 (479)
T PRK14727 174 PYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQ 250 (479)
T ss_pred ceecchHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcE
Confidence 111111111222357999999999999999999974 58999999885 678888999999999999999999999999
Q ss_pred eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865 202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI 281 (369)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~ 281 (369)
+..++.+++.+.+.+.++ ++++|.+|+|+|++||++++.....++.++++|+|.||+++|| +.|||||+|||++.+.
T Consensus 251 V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~- 327 (479)
T PRK14727 251 ASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQ- 327 (479)
T ss_pred EEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcch-
Confidence 998875555555665555 6999999999999999987765555667888999999999998 7999999999997654
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCCCccc-----cccccCCCcEEEEeecCCCce--------EEcCccc-----cccccc
Q 046865 282 KQGFLAQKHAQVAAKNLKVLMVGERESK-----MATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVP 343 (369)
Q Consensus 282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~-----~~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~ 343 (369)
..+.|..||+++|.||+ |.+... +......|+++.+|+++.++. ..+++.. ..+...
T Consensus 328 -~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 402 (479)
T PRK14727 328 -FVYVAAAAGSRAGINMT----GGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETD 402 (479)
T ss_pred -hhhHHHHHHHHHHHHHc----CCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCC
Confidence 67899999999999997 322111 111123689999999877663 2222221 234567
Q ss_pred ceecccccchHHHHHHcCCCCCccCC
Q 046865 344 GLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 344 ~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+++|+ ++++++++|||+|++|.||
T Consensus 403 g~~Kl--i~d~~~~~ilG~~~~g~~a 426 (479)
T PRK14727 403 GFIKL--VAEEGTRKLIGAQILAHEG 426 (479)
T ss_pred eEEEE--EEECCCCEEEEEEEECCCH
Confidence 89998 9999999999999999875
No 17
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.6e-47 Score=367.31 Aligned_cols=347 Identities=20% Similarity=0.210 Sum_probs=256.5
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC---------CCccccc--------cccc----------c---c-c
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITW--------ASLR----------A---M-V 58 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~---------~~~~~~~--------~~~~----------~---~-~ 58 (369)
..+|||+|||||+||+.||..|+ .|.+|+|||+. ..+|..+ ..+. . + +
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34689999999999999999986 69999999962 2233211 0100 0 0 0
Q ss_pred ----CCcccccceec------------ccccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH
Q 046865 59 ----EPSFGERSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120 (369)
Q Consensus 59 ----~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~ 120 (369)
...+....... +...+ .+++++.+++.+++++++.+ +|+.+.||+||||||++|..|+++.
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG 235 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPG 235 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCC
Confidence 00111111110 11111 26899999999999988776 5778999999999999988776543
Q ss_pred -HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865 121 -ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG 199 (369)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~ 199 (369)
+.+.+..........+++++|||+|++|+|+|..|.. .+.+|+++++.+++++.+++++.+.+++.|+++||+++++
T Consensus 236 ~~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~ 313 (558)
T PLN02546 236 IEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTE 313 (558)
T ss_pred hhhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeC
Confidence 2223333333333568999999999999999999984 4899999999999999999999999999999999999999
Q ss_pred ceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865 200 QRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI 278 (369)
Q Consensus 200 ~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~ 278 (369)
+.+.+++.. ++.+.+.+.+++...+|.+|+++|++||++++..+.++++++++|+|.||+++|| +.|||||+|||++.
T Consensus 314 ~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~ 392 (558)
T PLN02546 314 ESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR 392 (558)
T ss_pred CEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC
Confidence 999988643 3334555555544558999999999999987654555567888899999999998 79999999999976
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhCCCcc-ccccccC-----CCcEEEEeecCCCceEE--------cCccc-----cc
Q 046865 279 REIKQGFLAQKHAQVAAKNLKVLMVGERES-KMATYWP-----HSAIAIVSLGRKDAVAQ--------LPFMT-----TI 339 (369)
Q Consensus 279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-~~~~~~~-----~~~~~~v~lg~~~~~~~--------~~~~~-----~~ 339 (369)
+. +++.|.+||+++|+||. |.... ..+...| .|+++.+|+++.+|... .++.. ..
T Consensus 393 ~~--l~~~A~~~g~~~a~~i~----g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~ 466 (558)
T PLN02546 393 IN--LTPVALMEGGALAKTLF----GNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSG 466 (558)
T ss_pred cc--cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchhhhhC
Confidence 43 68899999999999997 32211 1111222 48999999987765432 12211 12
Q ss_pred ccccceecccccchHHHHHHcCCCCCccCC
Q 046865 340 GCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 340 g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+...+++|+ ++++++++|||+|++|.||
T Consensus 467 ~~~~g~~Kl--v~d~~t~~ILGa~ivG~~a 494 (558)
T PLN02546 467 LPDRVFMKL--IVCAKTNKVLGVHMCGEDA 494 (558)
T ss_pred CCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence 245789998 9999999999999999875
No 18
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=4.6e-48 Score=369.13 Aligned_cols=345 Identities=23% Similarity=0.255 Sum_probs=254.8
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---c-----------cccC----------Cccccccee
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----------AMVE----------PSFGERSVI 68 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---~-----------~~~~----------~~~~~~~~~ 68 (369)
||||||||||||++||..|+ .|.+|+|||+++ +|..+... . .... ..+......
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999987 599999999976 44332110 0 0000 000000000
Q ss_pred c-------------ccccc--ccceEEEeeeeeeecceEEecCC-eEEeccEEEEccCCCCCCCCChHH---HHHHHHHH
Q 046865 69 N-------------HTDYL--VNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATGHKDPVPKTRTE---RLNQYQAE 129 (369)
Q Consensus 69 ~-------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~p~~~~~---~~~~~~~~ 129 (369)
. +...+ .+++++.+++.+++.+++.+.++ ..+.||+||||||+.|..|+++.. .+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 159 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA 159 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence 0 11111 26788999999988888888765 468999999999999877665421 12222222
Q ss_pred HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE 209 (369)
Q Consensus 130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~ 209 (369)
......+++++|||+|++|+|+|..|.. .+.+|+++++.+++++.+++++...+++.+++.||+++++++|.+++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 160 LALDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred hCcccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence 2222347899999999999999999984 48999999999999999999999999999999999999999999887655
Q ss_pred CCeEEEcC---CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865 210 GSDTYLTS---TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL 286 (369)
Q Consensus 210 ~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~ 286 (369)
+...+.+. +++++++|.+|+|+|++|+++.+.....+++++++|+|.||++||| +.|||||+|||++.+ ++++.
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~--~~~~~ 314 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGL--QLEYV 314 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCc--ccHhH
Confidence 44444442 2357999999999999999985544445557788999999999998 799999999999864 47899
Q ss_pred HHHHHHHHHHHHHHHhhCCCccc-----cccccCCCcEEEEeecCCCce--------EEcCcc-----cccccccceecc
Q 046865 287 AQKHAQVAAKNLKVLMVGERESK-----MATYWPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKS 348 (369)
Q Consensus 287 A~~~g~~~a~~i~~~~~g~~~~~-----~~~~~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~ 348 (369)
|.+||+++|.||+.. .+... +......|+++.+|+++.++. ..+++. ...+...+++|+
T Consensus 315 A~~~g~~aa~ni~~~---~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 391 (463)
T TIGR02053 315 AAKEGVVAAENALGG---ANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKL 391 (463)
T ss_pred HHHHHHHHHHHhcCC---CCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEE
Confidence 999999999999731 01110 111123689999999876653 222221 134667899998
Q ss_pred cccchHHHHHHcCCCCCccCC
Q 046865 349 RDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 349 ~~~~~~~~~~ilG~~~~~~~~ 369 (369)
++++++++|||+|++|.||
T Consensus 392 --i~d~~~~~ilG~~~~g~~a 410 (463)
T TIGR02053 392 --VAEPGTGKVLGVQVVAPEA 410 (463)
T ss_pred --EEECCCCEEEEEEEECCCH
Confidence 9999999999999999875
No 19
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-47 Score=364.45 Aligned_cols=345 Identities=20% Similarity=0.230 Sum_probs=251.3
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------cc------cccC-----Ccccccceecc--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------LR------AMVE-----PSFGERSVINH-- 70 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~~------~~~~-----~~~~~~~~~~~-- 70 (369)
+|||+||||||||++||.+|+ .|.+|+|||++. +|..+.. +. .... ..........+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 589999999999999999986 599999999863 3321110 00 0000 00000000000
Q ss_pred ----------------ccc--cccceEEEeeeeeeecceEEe--cCC--eEEeccEEEEccCCCCCC-CCChH-HHHHHH
Q 046865 71 ----------------TDY--LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV-PKTRT-ERLNQY 126 (369)
Q Consensus 71 ----------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~~-p~~~~-~~~~~~ 126 (369)
... ..+++.+.+.+.+++.+++.. .+| +++.||+||||||++|.. |+.+. ..+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~ 162 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTY 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEch
Confidence 000 125678888888888876544 344 479999999999999865 43321 112222
Q ss_pred HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206 (369)
Q Consensus 127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 206 (369)
.........+++++|+|+|++|+|+|..|++ .+.+|+++++.+++++.+++++.+.+++.|+++||++++++.|.+++
T Consensus 163 ~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 163 EEQILSRELPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESID 240 (466)
T ss_pred HHHhccccCCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 2222222457899999999999999999984 48999999999999999999999999999999999999999999987
Q ss_pred CCCCCeEEEcC--CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865 207 VSEGSDTYLTS--TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282 (369)
Q Consensus 207 ~~~~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~ 282 (369)
.+++.+.+.+. +| +++++|.+|+|+|++||++.+.....++.++++|+|.||+++|| +.|+|||+|||++.+ +
T Consensus 241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~--~ 317 (466)
T PRK07818 241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKL--Q 317 (466)
T ss_pred EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCc--c
Confidence 55444444443 56 37999999999999999987655555567788899999999998 799999999999753 4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcccc--cccc-----CCCcEEEEeecCCCce--------EEcCcc-----cccccc
Q 046865 283 QGFLAQKHAQVAAKNLKVLMVGERESKM--ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCV 342 (369)
Q Consensus 283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~--~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~ 342 (369)
+++.|..||++||.||+ |.+..+. +... ..|+++.+|+++.++. ..+++. ...+..
T Consensus 318 l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 393 (466)
T PRK07818 318 LAHVAEAQGVVAAETIA----GAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDP 393 (466)
T ss_pred cHhHHHHHHHHHHHHHc----CCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCC
Confidence 78999999999999997 4321111 1112 2689999999876553 222221 124667
Q ss_pred cceecccccchHHHHHHcCCCCCccCC
Q 046865 343 PGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 343 ~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
.+++|+ ++++++++|||+|++|.||
T Consensus 394 ~g~~Kl--v~~~~~~~ilG~~~vg~~a 418 (466)
T PRK07818 394 TGFVKL--VADAKYGELLGGHLIGPDV 418 (466)
T ss_pred CeEEEE--EEECCCCeEEEEEEECCCH
Confidence 899999 9999999999999999875
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-47 Score=364.80 Aligned_cols=345 Identities=22% Similarity=0.270 Sum_probs=255.0
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc----------------------c---CCccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM----------------------V---EPSFGER 65 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~----------------------~---~~~~~~~ 65 (369)
..|||+||||||||++||..|+ .|.+|+|||+++ +|..+...... . ...+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 4699999999999999999986 599999999987 55432111000 0 0000111
Q ss_pred ceecc------------ccc--cccceEEEeeeeeeecceEEec--C-CeEEeccEEEEccCCCCCCC-CChH--HHHHH
Q 046865 66 SVINH------------TDY--LVNGRIVASPAINITENEVLTA--E-GRRVVYDYLVIATGHKDPVP-KTRT--ERLNQ 125 (369)
Q Consensus 66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~--~-g~~~~~d~lviAtG~~~~~p-~~~~--~~~~~ 125 (369)
.+..+ ... ..+++++.+++..++++++... + ++++.||+||||||++|..| +... ..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 11111 011 1368899999999988755443 2 36899999999999998654 3321 11222
Q ss_pred HHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 126 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..........+++++|+|+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+++.|+++||+++++++|.++
T Consensus 162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred chHhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 22222223457899999999999999999984 4899999999999999999999999999999999999999999998
Q ss_pred cCCCCCeEEEcCCC---cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865 206 SVSEGSDTYLTSTG---DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282 (369)
Q Consensus 206 ~~~~~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~ 282 (369)
+.+++.+.+.+.++ +++++|.+|+|+|++|+++++.....++.++ +|++.||+++|| +.|+|||+|||+..+ +
T Consensus 240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~--~ 315 (462)
T PRK06416 240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGP--M 315 (462)
T ss_pred EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCc--c
Confidence 76555566666555 6799999999999999998865444445667 899999999997 799999999999754 3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCceE--------EcCcc-----cccccccc
Q 046865 283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDAVA--------QLPFM-----TTIGCVPG 344 (369)
Q Consensus 283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~~~--------~~~~~-----~~~g~~~~ 344 (369)
+++.|.+||+++|.||. +.+........ .+|+++.+|+++.++.. ..++. ...+...+
T Consensus 316 ~~~~A~~~g~~aa~ni~----~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 391 (462)
T PRK06416 316 LAHKASAEGIIAAEAIA----GNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDG 391 (462)
T ss_pred hHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCce
Confidence 78999999999999998 32211001111 25899999998776532 22211 13456789
Q ss_pred eecccccchHHHHHHcCCCCCccCC
Q 046865 345 LIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 345 ~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
++|+ ++++++++|||+|++|.+|
T Consensus 392 ~~kl--i~~~~~~~ilG~~~~g~~a 414 (462)
T PRK06416 392 FVKL--IFDKKDGEVLGAHMVGARA 414 (462)
T ss_pred EEEE--EEECCCCEEEEEEEECCCH
Confidence 9998 9999999999999999764
No 21
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4e-47 Score=361.71 Aligned_cols=345 Identities=17% Similarity=0.223 Sum_probs=248.9
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---------------ccccC-----------Cccccc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---------------RAMVE-----------PSFGER 65 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---------------~~~~~-----------~~~~~~ 65 (369)
+|||+||||||||++||..++ .|++|+|||+++.+|..+... ..... ..+...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 589999999999999999986 599999999865565432110 00000 000000
Q ss_pred ceec------------ccccc--ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCC-CCCChHH--HHH
Q 046865 66 SVIN------------HTDYL--VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTRTE--RLN 124 (369)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~-~p~~~~~--~~~ 124 (369)
.... ...++ .+++++.+.+.+.+++++. ..++ .+++||+||||||++|. +|+.... .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~ 162 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 0000 00011 2478888888777766543 3455 36999999999999974 4543211 111
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
+..........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+++.|++.||++++++.+.+
T Consensus 163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 222222222468999999999999999999874 589999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEcC---C--CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865 205 DSVSEGSDTYLTS---T--GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR 279 (369)
Q Consensus 205 i~~~~~~~~v~~~---~--g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~ 279 (369)
++.+++.+.+.+. + ++++++|.|++|+|++||++.+.....++.++++| +.||+++|| +.|+|||+|||++.+
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~ 318 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP 318 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence 8765444444332 2 35799999999999999998766555555666666 778999998 799999999999865
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhCCCcc-----ccccccCCCcEEEEeecCCCce--------EEcCcc-----ccccc
Q 046865 280 EIKQGFLAQKHAQVAAKNLKVLMVGERES-----KMATYWPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGC 341 (369)
Q Consensus 280 ~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-----~~~~~~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~ 341 (369)
. +++.|.+||+++|+||+ +.... .+......|+++.+|+.+.++. ..+++. ...+.
T Consensus 319 ~--la~~A~~~g~~aa~~i~----~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 392 (466)
T PRK06115 319 M--LAHKAEDEAVACIERIA----GKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE 392 (466)
T ss_pred c--cHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCC
Confidence 4 78999999999999997 32211 1111123689999999776553 222222 13456
Q ss_pred ccceecccccchHHHHHHcCCCCCccCC
Q 046865 342 VPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 342 ~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
..+++|+ ++++++++|||+|++|.||
T Consensus 393 ~~g~~kl--v~~~~~~~ilG~~~~g~~a 418 (466)
T PRK06115 393 TEGFAKI--LADARTDEVLGVHMVGPSV 418 (466)
T ss_pred CceEEEE--EEECCCCEEEEEEEECCCH
Confidence 7899999 9999999999999999775
No 22
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.2e-47 Score=363.09 Aligned_cols=346 Identities=21% Similarity=0.244 Sum_probs=252.3
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------c----------cc-----ccC---Cc
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------L----------RA-----MVE---PS 61 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~----------~~-----~~~---~~ 61 (369)
|...++||+|||||+||++||..|+ .|.+|+|||++. +|..|.. + .. .+. +.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 4567899999999999999999987 499999999874 4432211 0 00 000 01
Q ss_pred ccccceec-------------ccc---ccccceEEEeeeeeeecc--eEEecCC--eEEeccEEEEccCCCCCCCCChH-
Q 046865 62 FGERSVIN-------------HTD---YLVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT- 120 (369)
Q Consensus 62 ~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~--~v~~~~g--~~~~~d~lviAtG~~~~~p~~~~- 120 (369)
+....+.. +.. ...+++++.+++.++|.+ .|.+.++ .+++||+||||||++|..|+++.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~ 160 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGL 160 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCC
Confidence 11001000 001 112678999999999876 4555565 47999999999999987665432
Q ss_pred --HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865 121 --ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL 198 (369)
Q Consensus 121 --~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~ 198 (369)
..+.+..........+++++|+|+|++|+|+|..|.+ .+.+|+++++ +++++.+++++.+.+++.|++.||++++
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~ 237 (468)
T PRK14694 161 AETPYLTSTSALELDHIPERLLVIGASVVALELAQAFAR--LGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLK 237 (468)
T ss_pred CCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 1111111122222457899999999999999999984 4899999987 4788888999999999999999999999
Q ss_pred CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865 199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI 278 (369)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~ 278 (369)
++.+.+++.+++.+.+.+.++ ++++|.+|+|+|++||++++....++++. ++|+|.||+++|| +.|||||+|||++.
T Consensus 238 ~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~ 314 (468)
T PRK14694 238 QTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ 314 (468)
T ss_pred CCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC
Confidence 999998876555455555444 79999999999999999887554455554 5789999999998 79999999999976
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCceE--------EcCccc-----ccc
Q 046865 279 REIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAVA--------QLPFMT-----TIG 340 (369)
Q Consensus 279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~~--------~~~~~~-----~~g 340 (369)
+. +.+.|..||++||.||+ +......+.. ..+|+++.+|+++.+|.. .+++.. ..+
T Consensus 315 ~~--~~~~A~~~G~~aa~~i~----~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 388 (468)
T PRK14694 315 PQ--FVYVAAAGGSRAAINMT----GGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNF 388 (468)
T ss_pred cc--cHHHHHHHHHHHHHHhc----CCCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcC
Confidence 54 67899999999999997 3321110111 136899999998765532 222221 234
Q ss_pred cccceecccccchHHHHHHcCCCCCccCC
Q 046865 341 CVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 341 ~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
...|++|+ ++++++++|||+|++|.+|
T Consensus 389 ~~~g~~kl--v~~~~~~~ilG~~~~g~~a 415 (468)
T PRK14694 389 DTGGFIKM--VAERGSGRLLGVQVVAGEA 415 (468)
T ss_pred CCceEEEE--EEECCCCEEEEEEEECCCH
Confidence 67889999 9999999999999999875
No 23
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=5.5e-47 Score=363.35 Aligned_cols=347 Identities=21% Similarity=0.252 Sum_probs=253.1
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc--------cccc-------------c-cC--Cccccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------SLRA-------------M-VE--PSFGER 65 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~--------~~~~-------------~-~~--~~~~~~ 65 (369)
..+|||||||||+||++||.+++ .|.+|+|||++. +|..+. .+.. + +. ......
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 46789999999999999999987 499999999864 443211 0000 0 00 000000
Q ss_pred ceecc------------cccc--ccceEEEeeeeeeecceEE----------------------------ecCCeEEecc
Q 046865 66 SVINH------------TDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYD 103 (369)
Q Consensus 66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~g~~~~~d 103 (369)
..... .+.+ .+++++.+++.++++++|. ..++++++||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 00000 0111 2678999999888877653 2356789999
Q ss_pred EEEEccCCCCCCCCChHHH-HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchH
Q 046865 104 YLVIATGHKDPVPKTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG 182 (369)
Q Consensus 104 ~lviAtG~~~~~p~~~~~~-~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~ 182 (369)
+||||||++|..|+++... ..+...... ...+++++|||+|++|+|+|..|.. .+.+|+++++++++++.+++++.
T Consensus 205 ~lVIATGS~P~~P~IpG~~~v~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~~~d~~i~ 281 (561)
T PTZ00058 205 NILIAVGNKPIFPDVKGKEFTISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLRKFDETII 281 (561)
T ss_pred EEEEecCCCCCCCCCCCceeEEEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccccCCHHHH
Confidence 9999999998877664321 111222222 2238999999999999999999974 59999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCC-cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc
Q 046865 183 DKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTG-DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN 260 (369)
Q Consensus 183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~ 260 (369)
+.+++.|++.||++++++.+.+++.+++ .+.+.+.++ +++++|.|++|+|++||++.+...++++. +++|+|.||++
T Consensus 282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~ 360 (561)
T PTZ00058 282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDN 360 (561)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcC
Confidence 9999999999999999999998875432 344544444 57999999999999999998877665443 46899999999
Q ss_pred eeeccCCCeEEecccCCcc--------------------------------ccchhHHHHHHHHHHHHHHHHHhhCCCcc
Q 046865 261 LRVKGQKNIFAIGDITDIR--------------------------------EIKQGFLAQKHAQVAAKNLKVLMVGERES 308 (369)
Q Consensus 261 l~~~~~~~i~a~GD~~~~~--------------------------------~~~~~~~A~~~g~~~a~~i~~~~~g~~~~ 308 (369)
+|| +.|||||+|||++.+ .+++++.|.+||+++|.||. |....
T Consensus 361 lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~----g~~~~ 435 (561)
T PTZ00058 361 QRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF----GPFSR 435 (561)
T ss_pred Ccc-CCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh----CCCCc
Confidence 998 799999999999832 24578999999999999997 32111
Q ss_pred cc-cccc-----CCCcEEEEeecCCCceEEc----------Cccc-----c----cccccceecccccchHHHHHHcCCC
Q 046865 309 KM-ATYW-----PHSAIAIVSLGRKDAVAQL----------PFMT-----T----IGCVPGLIKSRDLFVGKTRKQMGLE 363 (369)
Q Consensus 309 ~~-~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~~-----~----~g~~~~~~k~~~~~~~~~~~ilG~~ 363 (369)
.. +... ..|+++.+|+++.+|.... ++.. . .+...+++|+ ++++++++|||+|
T Consensus 436 ~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~t~~ILG~~ 513 (561)
T PTZ00058 436 TTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL--VCVGKEELIKGLH 513 (561)
T ss_pred ccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE--EEECCCCEEEEEE
Confidence 11 1111 2589999999877665221 1110 0 1245689998 9999999999999
Q ss_pred CCccCC
Q 046865 364 PDVAHA 369 (369)
Q Consensus 364 ~~~~~~ 369 (369)
++|.||
T Consensus 514 ivG~~a 519 (561)
T PTZ00058 514 IVGLNA 519 (561)
T ss_pred EECCCH
Confidence 999775
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-46 Score=368.01 Aligned_cols=344 Identities=21% Similarity=0.257 Sum_probs=252.1
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------c--cc---c---CCcccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------R--AM---V---EPSFGE 64 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~--~~---~---~~~~~~ 64 (369)
..||||||||||||++||..|+ .|.+|+|||++ .+|..+... . .+ + .+....
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 4699999999999999999986 59999999997 555432110 0 00 0 011111
Q ss_pred cceec-------------ccccc---ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCCCCCChHH---
Q 046865 65 RSVIN-------------HTDYL---VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDPVPKTRTE--- 121 (369)
Q Consensus 65 ~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~~p~~~~~--- 121 (369)
..... +...+ .+++++++++.+++.+++. +.+| ++++||+||||||++|..|+++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 10000 00111 2578999999999887543 3454 369999999999999887765421
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR 201 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~ 201 (369)
.+.+..........+++++|||+|++|+|+|..|.+ .+.+|+++++. .+++.+++++.+.+++.|++.||++++++.
T Consensus 256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~ 332 (561)
T PRK13748 256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFAR--LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 111111222223457999999999999999999984 48999999985 577778999999999999999999999999
Q ss_pred eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865 202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI 281 (369)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~ 281 (369)
+.+++.+++.+.+.+.++ ++++|.+|+|+|++||++++.....+++++++|+|.||+++|| +.|||||+|||++.+.
T Consensus 333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~- 409 (561)
T PRK13748 333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQ- 409 (561)
T ss_pred EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCcc-
Confidence 998876555555655555 7999999999999999987655555667888999999999998 7999999999998654
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCCCcccc-----ccccCCCcEEEEeecCCCce--------EEcCccc-----cccccc
Q 046865 282 KQGFLAQKHAQVAAKNLKVLMVGERESKM-----ATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVP 343 (369)
Q Consensus 282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-----~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~ 343 (369)
+.+.|..||++||.||+ |...... ......|+++.+|+++.+|. ..+++.. ..+...
T Consensus 410 -~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (561)
T PRK13748 410 -FVYVAAAAGTRAAINMT----GGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTR 484 (561)
T ss_pred -chhHHHHHHHHHHHHHc----CCCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCC
Confidence 67899999999999997 3221100 11113589999999876543 2222221 224567
Q ss_pred ceecccccchHHHHHHcCCCCCccCC
Q 046865 344 GLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 344 ~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+++|+ ++++++++|||+|++|.+|
T Consensus 485 g~~kl--i~d~~~~~ilG~~~~g~~a 508 (561)
T PRK13748 485 GFIKL--VIEEGSGRLIGVQAVAPEA 508 (561)
T ss_pred eEEEE--EEECCCCEEEEEEEECCCH
Confidence 89998 9999999999999999775
No 25
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-46 Score=357.29 Aligned_cols=344 Identities=17% Similarity=0.201 Sum_probs=253.4
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC-ccccccc---ccc-----ccCCcccccceec------------c
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWAS---LRA-----MVEPSFGERSVIN------------H 70 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~-~~~~~~~---~~~-----~~~~~~~~~~~~~------------~ 70 (369)
+|||+||||||||++||..|+ .|.+|+|||+++. +|..+.. +.. ............. .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999986 5999999999864 4532211 100 0000000000000 0
Q ss_pred cccc--ccceEEEeeeeeeecceEEecC---CeEEeccEEEEccCCCCCCCCChH----HHHHHHHHHHHHHhcCCeEEE
Q 046865 71 TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPKTRT----ERLNQYQAENQKIKSARSILI 141 (369)
Q Consensus 71 ~~~~--~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lviAtG~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v~v 141 (369)
.+.+ .+++++.+++.+++.+++...+ ..++.||+||||||++|..|+++. ..+.+..........+++++|
T Consensus 83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI 162 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI 162 (438)
T ss_pred HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence 0111 3688899998888888776543 247999999999999976554432 122223333333356889999
Q ss_pred EcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcE
Q 046865 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT 221 (369)
Q Consensus 142 vG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~ 221 (369)
||+|++|+|+|..|++ .+.+|+++++.+++++..++++.+.+.+.+++.||++++++.+.+++.+++.+.+. .++++
T Consensus 163 IGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~ 239 (438)
T PRK07251 163 IGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDET 239 (438)
T ss_pred ECCCHHHHHHHHHHHH--cCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeE
Confidence 9999999999999974 58999999999999998899999999999999999999999999987654444444 45678
Q ss_pred EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHH
Q 046865 222 IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL 301 (369)
Q Consensus 222 i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~ 301 (369)
+++|.+|+|+|++|+++.+.....++.++++|++.||+++|| +.|||||+|||++.+. +.+.|..+|++++.++..
T Consensus 240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~--~~~~a~~~~~~~~~~~~~- 315 (438)
T PRK07251 240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQ--FTYISLDDFRIVFGYLTG- 315 (438)
T ss_pred EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcc--cHhHHHHHHHHHHHHHcC-
Confidence 999999999999999887665544556778899999999998 7999999999997544 679999999999998873
Q ss_pred hhCCCc--------cccccccCCCcEEEEeecCCCceEE--------cCcc-----cccccccceecccccchHHHHHHc
Q 046865 302 MVGERE--------SKMATYWPHSAIAIVSLGRKDAVAQ--------LPFM-----TTIGCVPGLIKSRDLFVGKTRKQM 360 (369)
Q Consensus 302 ~~g~~~--------~~~~~~~~~~~~~~v~lg~~~~~~~--------~~~~-----~~~g~~~~~~k~~~~~~~~~~~il 360 (369)
.+. .+...| .+|+++.+|+.++++... +.+. ...+...|++|+ ++++++++||
T Consensus 316 ---~~~~~~~~~~~~p~~~~-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~il 389 (438)
T PRK07251 316 ---DGSYTLEDRGNVPTTMF-ITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKV--VVNTETKEIL 389 (438)
T ss_pred ---CCCccccccCCCCEEEE-CCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEE--EEECCCCEEE
Confidence 211 011112 368999999976655321 1111 134556789999 9999999999
Q ss_pred CCCCCccCC
Q 046865 361 GLEPDVAHA 369 (369)
Q Consensus 361 G~~~~~~~~ 369 (369)
|+|++|.||
T Consensus 390 G~~~~g~~a 398 (438)
T PRK07251 390 GATLFGEGS 398 (438)
T ss_pred EEEEECCCH
Confidence 999999775
No 26
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=7.6e-47 Score=359.83 Aligned_cols=344 Identities=23% Similarity=0.242 Sum_probs=254.0
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc--------cccc-------------c-cCC------cccc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------SLRA-------------M-VEP------SFGE 64 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~--------~~~~-------------~-~~~------~~~~ 64 (369)
+||+|||||++|+.||..++ +|.+|+|||++. +|..+. .+.. + +.. .+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 58999999999999999886 599999999875 332211 0000 0 000 0000
Q ss_pred ccee------------cccccc--ccceEEEeeeee----eecceE--EecCCe--EEeccEEEEccCCCCCCCCCh---
Q 046865 65 RSVI------------NHTDYL--VNGRIVASPAIN----ITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKTR--- 119 (369)
Q Consensus 65 ~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~~v--~~~~g~--~~~~d~lviAtG~~~~~p~~~--- 119 (369)
.... .+.+.+ .+++++.+++.. ++++++ ...+|. ++.||+||+|||+.|..|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 0000 001111 268999999888 555544 344564 799999999999998755421
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865 120 TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG 199 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~ 199 (369)
...+.++.........+++++|+|+|++|+|+|..|++ .+.+|+++++.+++++.+++++.+.+.+.|+++||+++++
T Consensus 161 ~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 238 (466)
T PRK07845 161 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR 238 (466)
T ss_pred CceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence 11122222222222457899999999999999999974 4899999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865 200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR 279 (369)
Q Consensus 200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~ 279 (369)
+.+.+++.+++.+.+.+.+|+++++|.+++++|++||++.+....++++++++|+|.||+++|| +.|||||+|||++.+
T Consensus 239 ~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~ 317 (466)
T PRK07845 239 SRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGVL 317 (466)
T ss_pred CEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCCc
Confidence 9999887555566677778889999999999999999987654555567888899999999998 799999999999764
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhCCCcccc-cccc-----CCCcEEEEeecCCCce--------EEcCcc-----cccc
Q 046865 280 EIKQGFLAQKHAQVAAKNLKVLMVGERESKM-ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIG 340 (369)
Q Consensus 280 ~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g 340 (369)
++++.|..||++++.||+ +.+..+. +... ..|+++.+|+++.++. ..+++. ...+
T Consensus 318 --~l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 391 (466)
T PRK07845 318 --PLASVAAMQGRIAMYHAL----GEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSG 391 (466)
T ss_pred --cchhHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhcC
Confidence 478999999999999998 3221111 1111 2589999999865442 222221 1356
Q ss_pred cccceecccccchHHHHHHcCCCCCccCC
Q 046865 341 CVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 341 ~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
...|++|+ ++++++++|||+|++|.+|
T Consensus 392 ~~~g~~kl--i~d~~~~~ilG~~~~g~~a 418 (466)
T PRK07845 392 LRDGFVKL--FCRPGTGVVIGGVVVAPRA 418 (466)
T ss_pred CCceEEEE--EEECCCCEEEEEEEECCCH
Confidence 67899999 9999999999999999875
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.5e-46 Score=356.24 Aligned_cols=345 Identities=25% Similarity=0.334 Sum_probs=254.2
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------cc---c-cC---Cccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RA---M-VE---PSFGER 65 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~---~-~~---~~~~~~ 65 (369)
.+|||||||||+||++||..|+ .|.+|+|||+ +.+|..+... .. + +. ......
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 4589999999999999999986 5999999999 4555432210 00 0 00 011110
Q ss_pred ceecc-------------c--cccccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCC-CCCCCCh---HHHHHHH
Q 046865 66 SVINH-------------T--DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---TERLNQY 126 (369)
Q Consensus 66 ~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~p~~~---~~~~~~~ 126 (369)
.+... . ....+++++.+.+..++.+++.+ +++++.||+||+|||+. |.+|+.. ...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~ 159 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS 159 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECc
Confidence 00000 0 01125778888888888887766 67789999999999999 8888752 1122222
Q ss_pred HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206 (369)
Q Consensus 127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 206 (369)
.........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+++.|+++ |++++++.+.+++
T Consensus 160 ~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~ 236 (460)
T PRK06292 160 DDAFELDKLPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236 (460)
T ss_pred hHHhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEE
Confidence 2222223467999999999999999999984 489999999999999999999999999999999 9999999999987
Q ss_pred CCCC-CeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865 207 VSEG-SDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ 283 (369)
Q Consensus 207 ~~~~-~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~ 283 (369)
.+++ .+.+++.++ +++++|.+++|+|++||++.+.....++.++++|+|.||+++|| +.|||||+|||++.+. +
T Consensus 237 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~--~ 313 (460)
T PRK06292 237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPP--L 313 (460)
T ss_pred EcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCcc--c
Confidence 5443 344433333 47999999999999999997655555567788899999999998 7999999999997643 6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcccc-----ccccCCCcEEEEeecCCCceE--------EcCcc-----cccccccce
Q 046865 284 GFLAQKHAQVAAKNLKVLMVGERESKM-----ATYWPHSAIAIVSLGRKDAVA--------QLPFM-----TTIGCVPGL 345 (369)
Q Consensus 284 ~~~A~~~g~~~a~~i~~~~~g~~~~~~-----~~~~~~~~~~~v~lg~~~~~~--------~~~~~-----~~~g~~~~~ 345 (369)
++.|.+||++||.||... ...... ......|+++.+|+++.++.. .+++. ...+...++
T Consensus 314 ~~~A~~qg~~aa~~i~~~---~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 390 (460)
T PRK06292 314 LHEAADEGRIAAENAAGD---VAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGF 390 (460)
T ss_pred hhHHHHHHHHHHHHhcCC---CCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeE
Confidence 889999999999999732 111100 111135899999998766532 22221 134567899
Q ss_pred ecccccchHHHHHHcCCCCCccCC
Q 046865 346 IKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 346 ~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+|+ ++++++++|||+|++|.+|
T Consensus 391 ~kl--v~d~~~~~ilG~~~vg~~a 412 (460)
T PRK06292 391 VKV--YADKKTGRLLGAHIIGPDA 412 (460)
T ss_pred EEE--EEECCCCEEEEEEEECCCH
Confidence 999 9999999999999999764
No 28
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-46 Score=360.79 Aligned_cols=286 Identities=19% Similarity=0.217 Sum_probs=214.8
Q ss_pred ceEEEeeeeeeecceEEec-CCeEEeccEEEEccCCCCCCCCCh---HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHH
Q 046865 77 GRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDPVPKTR---TERLNQYQAENQKIKSARSILIVGGGPTGVELA 152 (369)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~p~~~---~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a 152 (369)
++++.+.+.++++++|... +++++.||+||||||++|.+|+.. ...+.+..........+++++|||+|++|+|+|
T Consensus 249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM 328 (659)
T ss_pred eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHH
Confidence 6788999999998877653 567899999999999999887632 112222233222234578999999999999999
Q ss_pred HHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHH-HhCCcEEEeCceeeeccCCCCC--eEEEcCC-------C---
Q 046865 153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL-ISKKVDVKLGQRVNLDSVSEGS--DTYLTST-------G--- 219 (369)
Q Consensus 153 ~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g--- 219 (369)
..|.. .+.+|+++++.+++++.+++++.+.+.+.+ +++||++++++.|.+++.+++. +.+.+.+ +
T Consensus 329 ~~l~~--~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~ 406 (659)
T PTZ00153 329 DIYTA--LGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKK 406 (659)
T ss_pred HHHHh--CCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccc
Confidence 98874 489999999999999999999999999876 6789999999999998754432 4444321 1
Q ss_pred -----cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeecc-----CCCeEEecccCCccccchhHHHHH
Q 046865 220 -----DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKG-----QKNIFAIGDITDIREIKQGFLAQK 289 (369)
Q Consensus 220 -----~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~-----~~~i~a~GD~~~~~~~~~~~~A~~ 289 (369)
+++++|.||||+|++||++.+....+++.++ +|+|.||++|||.. .|||||+|||++.+ ++++.|.+
T Consensus 407 ~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~--~La~~A~~ 483 (659)
T PTZ00153 407 NMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ--MLAHTASH 483 (659)
T ss_pred ccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc--cCHHHHHH
Confidence 2799999999999999999876555555665 59999999999842 69999999999764 47899999
Q ss_pred HHHHHHHHHHHHhh----C---C--Ccccccccc-----CCCcEEEEeecCCCceEEc----------Cccc-----ccc
Q 046865 290 HAQVAAKNLKVLMV----G---E--RESKMATYW-----PHSAIAIVSLGRKDAVAQL----------PFMT-----TIG 340 (369)
Q Consensus 290 ~g~~~a~~i~~~~~----g---~--~~~~~~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~~-----~~g 340 (369)
||+++++||..... + . .....+... ..|+++.+|+++.++.... .+.. ..+
T Consensus 484 qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~ 563 (659)
T PTZ00153 484 QALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCEN 563 (659)
T ss_pred HHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcc
Confidence 99999999973200 0 0 110001111 2589999999877653221 1110 111
Q ss_pred c----------------------ccceecccccchHHHHHHcCCCCCccCC
Q 046865 341 C----------------------VPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 341 ~----------------------~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
. ..|++|+ ++++++++|||+|++|.||
T Consensus 564 ~~~~p~~~~~~~y~~g~~~~~~~~~G~vKl--i~d~~t~rILGa~ivG~~A 612 (659)
T PTZ00153 564 NISFPNNSKNNSYNKGKYNTVDNTEGMVKI--VYLKDTKEILGMFIVGSYA 612 (659)
T ss_pred ccccccccccccccccccccccCCceEEEE--EEECCCCeEEEEEEECCCH
Confidence 1 6889999 9999999999999999886
No 29
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2e-45 Score=351.08 Aligned_cols=347 Identities=19% Similarity=0.248 Sum_probs=252.9
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcC------CCCcccccccc--------c----------cc-----cCC-
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP------KEYFEITWASL--------R----------AM-----VEP- 60 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~------~~~~~~~~~~~--------~----------~~-----~~~- 60 (369)
..||++|||||+||++||.+++ .|.+|+|||+ ...+|..+... . .. +..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 3689999999999999999986 5999999998 23333221110 0 00 000
Q ss_pred --cccccceecc------------ccc--cccceEEEeeeeeee----cceEEec--CCeEEeccEEEEccCCCCCC-CC
Q 046865 61 --SFGERSVINH------------TDY--LVNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PK 117 (369)
Q Consensus 61 --~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~----~~~v~~~--~g~~~~~d~lviAtG~~~~~-p~ 117 (369)
.+........ ..+ ..+++++.+++.+++ ..+|.+. ++++++||+||||||+.|.. |+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~ 162 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPG 162 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCC
Confidence 0000000000 001 135788999998887 4566553 34689999999999999853 43
Q ss_pred Ch--HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcE
Q 046865 118 TR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD 195 (369)
Q Consensus 118 ~~--~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~ 195 (369)
.+ ...+.+..........+++++|+|+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+.+.|+++||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLD 240 (475)
T ss_pred CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcE
Confidence 32 11121222222222457999999999999999999874 489999999999999988999999999999999999
Q ss_pred EEeCceeeeccCCCCCeEEEcCC--C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEE
Q 046865 196 VKLGQRVNLDSVSEGSDTYLTST--G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFA 271 (369)
Q Consensus 196 i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a 271 (369)
+++++.|.+++.+++.+.+.+.+ | +++++|.+++|+|++|+++++..+.+++.++++|+|.||+++|| +.|+|||
T Consensus 241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA 319 (475)
T PRK06327 241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYA 319 (475)
T ss_pred EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEE
Confidence 99999999987655555555443 3 47999999999999999987665556667888999999999998 7999999
Q ss_pred ecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCceE--------EcCcc--
Q 046865 272 IGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAVA--------QLPFM-- 336 (369)
Q Consensus 272 ~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~~--------~~~~~-- 336 (369)
+|||+..+. +++.|..||+++|.||. +.+....+.. ..+|+++.+|+.++++.. .+++.
T Consensus 320 ~GD~~~~~~--~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~ 393 (475)
T PRK06327 320 IGDVVRGPM--LAHKAEEEGVAVAERIA----GQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMAN 393 (475)
T ss_pred EEeccCCcc--hHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEccccc
Confidence 999997543 78999999999999997 3221111111 126899999998766532 22321
Q ss_pred ---cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865 337 ---TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 337 ---~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
...+...+++|+ ++++++++|||+|++|.||
T Consensus 394 ~~~~~~~~~~g~~kl--v~d~~~~~ilG~~~~g~~a 427 (475)
T PRK06327 394 GRALAMGEPDGFVKI--IADAKTDEILGVHVIGPNA 427 (475)
T ss_pred chhhhcCCCCeEEEE--EEECCCCEEEEEEEECCCH
Confidence 134567899999 9999999999999999775
No 30
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.8e-46 Score=323.90 Aligned_cols=346 Identities=19% Similarity=0.266 Sum_probs=270.2
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc--------------ccCC-cc------------c
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--------------MVEP-SF------------G 63 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~--------------~~~~-~~------------~ 63 (369)
..+||+|||+||+|..||..++ .|++.++||++..+|..+..... ..+. .+ .
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 4699999999999999998765 69999999999887643221100 0000 00 0
Q ss_pred ccceec------------cccccc--cceEEEeeeeeeecceEEec--CC--eEEeccEEEEccCCC-CCCCCCh--HHH
Q 046865 64 ERSVIN------------HTDYLV--NGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHK-DPVPKTR--TER 122 (369)
Q Consensus 64 ~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lviAtG~~-~~~p~~~--~~~ 122 (369)
...... +...++ ++.++.+...++++++|... || ..+.++++++|||+. +.+|++. .+.
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk 197 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK 197 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence 000000 011121 46788999999999876543 44 578999999999995 7788853 333
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCcee
Q 046865 123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV 202 (369)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 202 (369)
+-+....+.....|++++|+|+|++|+|++..+. +.|.+||+++-.+.+.+.+|.++++.+++.|++.|++++++++|
T Consensus 198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 3333334455567999999999999999999887 57999999999999999999999999999999999999999999
Q ss_pred eeccCCCC-CeEEEcCC---C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccC
Q 046865 203 NLDSVSEG-SDTYLTST---G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT 276 (369)
Q Consensus 203 ~~i~~~~~-~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~ 276 (369)
...+.+++ .+.+++.+ + ++++||.+++++|++|.+..|..+.+++..|++|++.||..++| .+||||+|||+.
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence 99887655 55555432 2 47999999999999999999999999999999999999999999 699999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhhCCCc------cccccccCCCcEEEEeecCCCc--------eEEcCccc-----
Q 046865 277 DIREIKQGFLAQKHAQVAAKNLKVLMVGERE------SKMATYWPHSAIAIVSLGRKDA--------VAQLPFMT----- 337 (369)
Q Consensus 277 ~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~------~~~~~~~~~~~~~~v~lg~~~~--------~~~~~~~~----- 337 (369)
..|+ ++|.|..||..+.+.|. |... .+...| .+|++++||.++.+. ++.++|..
T Consensus 355 ~gpM--LAhkAeeegI~~VE~i~----g~~~hv~ynciP~v~y-thPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRak 427 (506)
T KOG1335|consen 355 LGPM--LAHKAEEEGIAAVEGIA----GGHGHVDYNCIPSVVY-THPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAK 427 (506)
T ss_pred Ccch--hhhhhhhhchhheeeec----ccCcccccCCCCceee-cccceeeeccchhhHHhcCcceEeeeccccccchhh
Confidence 7765 79999999999998886 4321 112223 379999999965543 56777754
Q ss_pred ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865 338 TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 338 ~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
......||+|. +.++++.+|||+||+|.||
T Consensus 428 tn~d~eg~vKv--l~d~~tdkiLGvHiigp~A 457 (506)
T KOG1335|consen 428 TNNDTEGFVKV--LADKETDKILGVHIIGPNA 457 (506)
T ss_pred ccCCccceeEE--EecCCCCcEEEEEEecCCH
Confidence 34567899999 9999999999999999986
No 31
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=5.8e-45 Score=346.67 Aligned_cols=343 Identities=20% Similarity=0.257 Sum_probs=247.2
Q ss_pred ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccc--cceecccccc--ccceEE-Eeeee
Q 046865 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGE--RSVINHTDYL--VNGRIV-ASPAI 85 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~ 85 (369)
++|||||||+||+++|..|++ +.+|+|||+++++++....+.......+.. .......+.+ .+++++ ...+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 379999999999999998864 569999999998765433333222211111 1111111111 256765 45777
Q ss_pred eeec--ceEEecC---CeEEe--ccEEEEccCCCCCCCCChH---H------HHHHHHHHHHHH--hcCCeEEEEcCChh
Q 046865 86 NITE--NEVLTAE---GRRVV--YDYLVIATGHKDPVPKTRT---E------RLNQYQAENQKI--KSARSILIVGGGPT 147 (369)
Q Consensus 86 ~~~~--~~v~~~~---g~~~~--~d~lviAtG~~~~~p~~~~---~------~~~~~~~~~~~~--~~~~~v~vvG~G~~ 147 (369)
.++. +.+.+.+ +..+. ||+||+|||++|..|+++. . .+.+.....+.. ..+++++|+|+|++
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~ 160 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI 160 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence 7764 3555543 55666 9999999999976654321 1 122222222222 24689999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccE
Q 046865 148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC 226 (369)
Q Consensus 148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~ 226 (369)
|+|+|..+.+ .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++++.+++.+++...+.+. +.++++|.
T Consensus 161 g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~ 237 (444)
T PRK09564 161 GLEAVEAAKH--LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADV 237 (444)
T ss_pred HHHHHHHHHh--cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCE
Confidence 9999999874 5899999999998887 588999999999999999999999999998654333334444 45799999
Q ss_pred EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHH
Q 046865 227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNL 298 (369)
Q Consensus 227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i 298 (369)
+++|+|++|+++++...++ +++++|+|.||+++|| +.|||||+|||++.+. +++++.|.+||+++|+||
T Consensus 238 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni 314 (444)
T PRK09564 238 VIVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENL 314 (444)
T ss_pred EEECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHh
Confidence 9999999999998876654 5677899999999998 7999999999997531 357889999999999999
Q ss_pred HHHhhCCCccccccc------cCCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHHHHHHc
Q 046865 299 KVLMVGERESKMATY------WPHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGKTRKQM 360 (369)
Q Consensus 299 ~~~~~g~~~~~~~~~------~~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~~~~il 360 (369)
+ |.+......+ ..+|+++.+|+.++++. ..+... ...+...+++|+ ++++++++||
T Consensus 315 ~----g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--v~~~~~~~il 388 (444)
T PRK09564 315 A----GRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKL--IYEADTKVIL 388 (444)
T ss_pred c----CCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEE
Confidence 8 4322111001 13578999998776652 112111 124566789998 9999999999
Q ss_pred CCCCCccC
Q 046865 361 GLEPDVAH 368 (369)
Q Consensus 361 G~~~~~~~ 368 (369)
|+|++|.+
T Consensus 389 G~~~~g~~ 396 (444)
T PRK09564 389 GGQIIGKK 396 (444)
T ss_pred eEEEEcCc
Confidence 99999975
No 32
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.8e-45 Score=350.48 Aligned_cols=349 Identities=17% Similarity=0.125 Sum_probs=249.4
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC--------Cccccccc--------cc-------------cc-cC--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWAS--------LR-------------AM-VE-- 59 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~--------~~~~~~~~--------~~-------------~~-~~-- 59 (369)
+|||||||||+||+.||..++ .|.+|+|||+.. .+|..+.. +. .+ +.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 589999999999999999987 599999999731 23332110 00 00 00
Q ss_pred C--ccccccee------------cccccc--ccceEEEeeeeeeecceEEec--CC--eEEeccEEEEccCCCCCCCCCh
Q 046865 60 P--SFGERSVI------------NHTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR 119 (369)
Q Consensus 60 ~--~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lviAtG~~~~~p~~~ 119 (369)
. .+...... .+...+ .+++++++++.+++++++... ++ +++.||+||||||++|..|+++
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 0 00000000 000111 268899999999999876653 33 4799999999999998877654
Q ss_pred HH--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEE
Q 046865 120 TE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK 197 (369)
Q Consensus 120 ~~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~ 197 (369)
.. ...+..........+++++|+|+|++|+|+|..|++ .+.+|+++++ +++++.+++++.+.+++.|+++||+++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence 32 111222232333467899999999999999999985 4899999998 578899999999999999999999999
Q ss_pred eCceeeeccCCCCCeEEEcCCC---cEEeccEEEEcCCCCCCchhhcccccCCCCCC-CCcEEeCCceeeccCCCeEEec
Q 046865 198 LGQRVNLDSVSEGSDTYLTSTG---DTIKADCHFLCTGKPVGSDWLKDTILKDSLDT-DGMLMVDENLRVKGQKNIFAIG 273 (369)
Q Consensus 198 ~~~~v~~i~~~~~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~-~g~i~vd~~l~~~~~~~i~a~G 273 (369)
+++.+.+++..++.+.+++.++ +++++|.+|+|+|++||++++.....++.+++ +|+|.||+++|| +.|+|||+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence 9998888765444555665555 37999999999999999998766666667765 489999999998 799999999
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHhhCC-C--ccccccccCCCcEEEEeecCCCceEE----------cCccc---
Q 046865 274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGE-R--ESKMATYWPHSAIAIVSLGRKDAVAQ----------LPFMT--- 337 (369)
Q Consensus 274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~-~--~~~~~~~~~~~~~~~v~lg~~~~~~~----------~~~~~--- 337 (369)
||+... +.+++.|.+||+++|+||+..-... . ..+...| ..|+++.+|+++.++... .++..
T Consensus 318 Dv~~~~-~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~-~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~ 395 (484)
T TIGR01438 318 DILEDK-QELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVF-TPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEW 395 (484)
T ss_pred EecCCC-ccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEe-CCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhh
Confidence 999632 2367899999999999997311000 0 0011122 358999999987765432 11111
Q ss_pred --cc--ccccceecccccch-HHHHHHcCCCCCccCC
Q 046865 338 --TI--GCVPGLIKSRDLFV-GKTRKQMGLEPDVAHA 369 (369)
Q Consensus 338 --~~--g~~~~~~k~~~~~~-~~~~~ilG~~~~~~~~ 369 (369)
.. +...+++|+ +++ +++++|||+|++|.||
T Consensus 396 ~~~~~~~~~~g~~Kl--i~~~~~t~~ILG~~ivg~~a 430 (484)
T TIGR01438 396 TIPSRDNSNKCYAKA--VCNRKENERVVGFHVVGPNA 430 (484)
T ss_pred HhhCCCccCCcEEEE--EEecCCCCeEEEEEEECCCH
Confidence 11 125689998 886 4699999999999775
No 33
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.7e-45 Score=350.42 Aligned_cols=345 Identities=21% Similarity=0.281 Sum_probs=248.0
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------cc-------------c-cC---Cccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------RA-------------M-VE---PSFGER 65 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------~~-------------~-~~---~~~~~~ 65 (369)
..|||+||||||||++||.+|+ .|.+|+|||++ .+|..+... .. + +. +.....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4799999999999999999986 59999999996 444332110 00 0 00 000100
Q ss_pred ceec------------ccccc--ccceEEEeeeeeeecc-------e--EEecCC--eEEeccEEEEccCCCCCC-CCCh
Q 046865 66 SVIN------------HTDYL--VNGRIVASPAINITEN-------E--VLTAEG--RRVVYDYLVIATGHKDPV-PKTR 119 (369)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~-------~--v~~~~g--~~~~~d~lviAtG~~~~~-p~~~ 119 (369)
.... ....+ .+++++.+++.+++.+ + |.+.+| .++.||+||||||++|.. |+.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 161 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 0000 00111 2689999999999876 4 444455 579999999999999864 4332
Q ss_pred H--HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEE
Q 046865 120 T--ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK 197 (369)
Q Consensus 120 ~--~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~ 197 (369)
. ..+.+..+.......+++++|||+|++|+|+|..|++ .+.+|+++++.+++++.+++++.+.+.+.|+++||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 1 1111222222222357899999999999999999984 48999999999999999999999999999999999999
Q ss_pred eCceeeeccC--CCCCeEEEcCCCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865 198 LGQRVNLDSV--SEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG 273 (369)
Q Consensus 198 ~~~~v~~i~~--~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G 273 (369)
+++.|.+++. +++...+.+.+|+ ++++|.+|+|+|++|+++.+....+++.. ++|++.||+++|| +.|+|||+|
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiG 317 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIG 317 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEee
Confidence 9999998864 3332233445663 69999999999999998876544444433 4689999999998 689999999
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcccc-cccc-----CCCcEEEEeecCCCce--------EEcCcc---
Q 046865 274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKM-ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM--- 336 (369)
Q Consensus 274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~--- 336 (369)
||++.+ ++++.|..||+++|.||. |.+..+. +... .+|+++.+|+.+.++. ...++.
T Consensus 318 D~~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~ 391 (472)
T PRK05976 318 DVIGEP--QLAHVAMAEGEMAAEHIA----GKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANG 391 (472)
T ss_pred ecCCCc--ccHHHHHHHHHHHHHHHc----CCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcch
Confidence 999754 468999999999999996 4321111 1111 2588999998765542 222221
Q ss_pred --cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865 337 --TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 337 --~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
...+...+++|+ ++++++++|||+|++|.+|
T Consensus 392 ~~~~~~~~~g~~kl--i~d~~~~~ilG~~~~g~~a 424 (472)
T PRK05976 392 KALTYGESDGFVKV--VADRDTHDILGVQAVGPHV 424 (472)
T ss_pred hhhhcCCCceEEEE--EEECCCCEEEEEEEECCCH
Confidence 234667899999 9999999999999999764
No 34
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.9e-45 Score=346.62 Aligned_cols=342 Identities=22% Similarity=0.233 Sum_probs=247.2
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc-------cccccc-------------cc-c-----CCcccccce
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI-------TWASLR-------------AM-V-----EPSFGERSV 67 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~-------~~~~~~-------------~~-~-----~~~~~~~~~ 67 (369)
+|+|||||+||++||..|+ .|.+|+|||+++..|- |...+. .+ + .........
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 8999999999999999986 5999999999764321 111110 00 0 000111111
Q ss_pred ecc------------ccc--cccceEEEeeeeeeecceEEe--cCC-eEEeccEEEEccCCCCCCCCCh---HHHHHHHH
Q 046865 68 INH------------TDY--LVNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR---TERLNQYQ 127 (369)
Q Consensus 68 ~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~d~lviAtG~~~~~p~~~---~~~~~~~~ 127 (369)
..+ ... ..+++++++++.+++++++.. +++ ++++||+||||||++|..|++. ...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~ 161 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSK 161 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcch
Confidence 100 001 126789999999999886544 344 4799999999999998655432 11112222
Q ss_pred HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV 207 (369)
Q Consensus 128 ~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 207 (369)
........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+.+++.
T Consensus 162 ~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~ 239 (458)
T PRK06912 162 HAMSLPSIPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNS 239 (458)
T ss_pred HHhCccccCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence 222333457899999999999999999874 489999999999999999999999999999999999999999998875
Q ss_pred CCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhH
Q 046865 208 SEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGF 285 (369)
Q Consensus 208 ~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~ 285 (369)
++..+.+.. +| +++++|.+|+|+|++|+++.+.....++.++++| |.||+++|| +.|||||+|||++.+ ++++
T Consensus 240 ~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~--~la~ 314 (458)
T PRK06912 240 YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGI--QLAH 314 (458)
T ss_pred cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCc--ccHH
Confidence 444344433 34 3699999999999999998765444455666666 999999998 799999999999753 4789
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCceE--------EcCccc-----ccccccceec
Q 046865 286 LAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAVA--------QLPFMT-----TIGCVPGLIK 347 (369)
Q Consensus 286 ~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~~--------~~~~~~-----~~g~~~~~~k 347 (369)
.|.+||+++|.||. |.+....+.. ..+|+++.+|+++.++.. .+++.. ..+...|++|
T Consensus 315 ~A~~~g~~aa~~~~----g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 390 (458)
T PRK06912 315 VAFHEGTTAALHAS----GEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVK 390 (458)
T ss_pred HHHHHHHHHHHHHc----CCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEE
Confidence 99999999999997 4321110111 125899999998766532 222211 3455788999
Q ss_pred ccccchHHHHHHcCCCCCccCC
Q 046865 348 SRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 348 ~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+ ++++++++|||+|++|.||
T Consensus 391 l--i~d~~~~~ilG~~~~g~~a 410 (458)
T PRK06912 391 V--IVEPKYQEIVGISIIGPRA 410 (458)
T ss_pred E--EEECCCCEEEEEEEECCCH
Confidence 9 9999999999999999875
No 35
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.1e-45 Score=348.00 Aligned_cols=345 Identities=20% Similarity=0.170 Sum_probs=248.5
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC--------Cccccccc---ccc-------------------c-c--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWAS---LRA-------------------M-V-- 58 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~--------~~~~~~~~---~~~-------------------~-~-- 58 (369)
.|||+||||||||++||..|+ .|.+|+|||+++ .+|..+.. +.. + +
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 589999999999999999986 599999999632 24432110 000 0 0
Q ss_pred CCcccccceecc------------ccc--cccceEEEeeeeeeecceEEecC---CeEEeccEEEEccCCCCCCCC-ChH
Q 046865 59 EPSFGERSVINH------------TDY--LVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TRT 120 (369)
Q Consensus 59 ~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lviAtG~~~~~p~-~~~ 120 (369)
........+..+ ... ..+++++++++.+.+.++|.+.+ +..++||+||||||+.|..|. ++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G 164 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG 164 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence 000110011000 000 13578888999888888776532 357999999999999987663 432
Q ss_pred H--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865 121 E--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL 198 (369)
Q Consensus 121 ~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~ 198 (369)
. ...+..........+++++|||+|++|+|+|..|+. .+.+||++++. ++++.+++++.+.+++.|++.||++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~ 241 (499)
T PTZ00052 165 AKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLE 241 (499)
T ss_pred ccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEc
Confidence 1 111222233333457899999999999999999984 48999999974 677889999999999999999999999
Q ss_pred CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865 199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI 278 (369)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~ 278 (369)
++.+.+++..++...+.+.+|+++++|.||+++|++||++++....++++++++|++.++++ || +.|+|||+|||+..
T Consensus 242 ~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~ 319 (499)
T PTZ00052 242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG 319 (499)
T ss_pred CCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC
Confidence 99988876544455677778888999999999999999998865556667888898877777 87 79999999999853
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhCCCcc-cccccc-----CCCcEEEEeecCCCceEE----------cCccc-----
Q 046865 279 REIKQGFLAQKHAQVAAKNLKVLMVGERES-KMATYW-----PHSAIAIVSLGRKDAVAQ----------LPFMT----- 337 (369)
Q Consensus 279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-~~~~~~-----~~~~~~~v~lg~~~~~~~----------~~~~~----- 337 (369)
. +.+++.|.+||+++|+||. +.... ..+... ..|+++.+|+++.+|... +++..
T Consensus 320 ~-~~l~~~A~~~g~~aa~ni~----g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~ 394 (499)
T PTZ00052 320 R-PELTPVAIKAGILLARRLF----KQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA 394 (499)
T ss_pred C-cccHHHHHHHHHHHHHHHh----CCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc
Confidence 2 2468999999999999997 32211 111111 268999999987766422 11110
Q ss_pred ccc---------------cccceecccccchH-HHHHHcCCCCCccCC
Q 046865 338 TIG---------------CVPGLIKSRDLFVG-KTRKQMGLEPDVAHA 369 (369)
Q Consensus 338 ~~g---------------~~~~~~k~~~~~~~-~~~~ilG~~~~~~~~ 369 (369)
... ...||+|+ ++++ ++++|||+|++|.||
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~~~~~IlG~~ivg~~A 440 (499)
T PTZ00052 395 VHREKHERARKDEYDFDVSSNCLAKL--VCVKSEDNKVVGFHFVGPNA 440 (499)
T ss_pred cccccccccccccccccccCCceEEE--EEecCCCCEEEEEEEECCCH
Confidence 000 15789998 8887 589999999999886
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.4e-45 Score=348.96 Aligned_cols=349 Identities=23% Similarity=0.291 Sum_probs=253.0
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc------------------c----cC---Ccccccc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------M----VE---PSFGERS 66 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~------------------~----~~---~~~~~~~ 66 (369)
.|||+|||||+||++||.+|+ .|.+|+|||+ +.+|..+..... . +. ..+....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 389999999999999999997 5999999999 555543221100 0 00 0000000
Q ss_pred eeccc------------cc--cccceEEEeeeeeeecceEEec--CC-eEEeccEEEEccCCCCCCCCCh----HHHHHH
Q 046865 67 VINHT------------DY--LVNGRIVASPAINITENEVLTA--EG-RRVVYDYLVIATGHKDPVPKTR----TERLNQ 125 (369)
Q Consensus 67 ~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~~--~g-~~~~~d~lviAtG~~~~~p~~~----~~~~~~ 125 (369)
..... .+ ..+++++.+++.+++++.+... ++ .++.||+||+|||++|..|+.+ ...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~ 159 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT 159 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence 00000 00 1257888999888887755443 33 4799999999999998766543 111222
Q ss_pred HHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 126 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.++
T Consensus 160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 160 STGALNLKEVPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred chHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 22222223457899999999999999999984 4899999999999999999999999999999999999999999988
Q ss_pred cCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865 206 SVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ 283 (369)
Q Consensus 206 ~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~ 283 (369)
+.+++.+.+.+.+| +++++|.+|+|+|++|+++.+....+++.++++|++.||+++|+ +.|+|||+|||++.+ ++
T Consensus 238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~--~~ 314 (461)
T TIGR01350 238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGGP--ML 314 (461)
T ss_pred EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCCc--cc
Confidence 76655666666666 47999999999999999884433444457788899999999998 799999999999754 37
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCC--ccccccccCCCcEEEEeecCCCce--------EEcCcc-----cccccccceecc
Q 046865 284 GFLAQKHAQVAAKNLKVLMVGER--ESKMATYWPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKS 348 (369)
Q Consensus 284 ~~~A~~~g~~~a~~i~~~~~g~~--~~~~~~~~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~ 348 (369)
++.|.+||+.+|+||...-.... ...+.....+|+++.+|+.+.++. ...++. ...+...+++|+
T Consensus 315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 394 (461)
T TIGR01350 315 AHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKI 394 (461)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEE
Confidence 89999999999999973211000 001111112588999998765443 222221 124567899999
Q ss_pred cccchHHHHHHcCCCCCccCC
Q 046865 349 RDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 349 ~~~~~~~~~~ilG~~~~~~~~ 369 (369)
++++++++|||+|++|.+|
T Consensus 395 --~~~~~~~~ilG~~~~g~~a 413 (461)
T TIGR01350 395 --IADKKTGEILGAHIIGPHA 413 (461)
T ss_pred --EEECCCCEEEEEEEECCCH
Confidence 9999999999999999764
No 37
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=9.5e-44 Score=329.89 Aligned_cols=326 Identities=26% Similarity=0.412 Sum_probs=247.9
Q ss_pred eEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEeeeeee
Q 046865 15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVASPAINI 87 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (369)
+|||||||+||+.+|.+|+ ++.+|+|||+++++.+.+. +..+...... .....+..+++ .+++|+.+++..+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence 5899999999999999884 3689999999988665432 2222211111 11222333332 2688999999999
Q ss_pred ec--ceEEecCCeEEeccEEEEccCCCCCCCCChH--------HHHHHHHH----HHHHH---hcCCeEEEEcCChhHHH
Q 046865 88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------ERLNQYQA----ENQKI---KSARSILIVGGGPTGVE 150 (369)
Q Consensus 88 ~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~--------~~~~~~~~----~~~~~---~~~~~v~vvG~G~~g~e 150 (369)
|. ++|.+.+|++++||+||||||+.+..|.++. ..+.++.. ..... ...++++|+|+|++|+|
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E 159 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE 159 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence 85 4788888889999999999999977665432 11111111 22222 23579999999999999
Q ss_pred HHHHHhhhCC--C--CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccE
Q 046865 151 LAGEIAVDFP--E--KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC 226 (369)
Q Consensus 151 ~a~~l~~~~~--~--~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~ 226 (369)
+|..|.+.++ + .+|+++ +.+.+++.+++++.+.+++.|+++||++++++.+.+++.+ .+.+.+|+++++|.
T Consensus 160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~ 234 (364)
T TIGR03169 160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADA 234 (364)
T ss_pred HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCE
Confidence 9999975332 2 589999 6677888888899999999999999999999999988532 46777888999999
Q ss_pred EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc---ccchhHHHHHHHHHHHHHHHHHhh
Q 046865 227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR---EIKQGFLAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~---~~~~~~~A~~~g~~~a~~i~~~~~ 303 (369)
+|+|+|.+|++ ++...++ .++++|++.||+++|++++|||||+|||+..+ .++.+..|++||+++|+||.+.+.
T Consensus 235 vi~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 235 ILWATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred EEEccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 99999999985 4444443 56788999999999987899999999999643 356788999999999999999998
Q ss_pred CCCccccccccCC-CcEEEEeecCCCceEEcCcccccccccceecccccchH
Q 046865 304 GERESKMATYWPH-SAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVG 354 (369)
Q Consensus 304 g~~~~~~~~~~~~-~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~ 354 (369)
|++ +.+|+|. ...+++++|...++.+.+.+.+.|++.+++|. .+.+
T Consensus 312 g~~---~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~k~--~~~~ 358 (364)
T TIGR03169 312 GQP---LRPFRPQRDYLQLLNTGDRRAVASWGWIIGPGRWLWRLKD--WIDR 358 (364)
T ss_pred CCC---CCCCcccccceeEEEcCCCcEEEeecceeecCccHHHHHH--HHhH
Confidence 865 3466663 45688999999999888777788999999996 4443
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.7e-43 Score=353.52 Aligned_cols=342 Identities=17% Similarity=0.208 Sum_probs=250.3
Q ss_pred cceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEee-e
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVASP-A 84 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~ 84 (369)
+++|||||+|+||+.+|..|+ .+++|+||++++++.+....+..++.............+++ .+++++.++ +
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 458999999999999998874 25899999999988776655544443322212222222232 267887764 6
Q ss_pred eeeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865 85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153 (369)
Q Consensus 85 ~~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~ 153 (369)
..+|.. .|.+.+|.+++||+||||||+.|.+|+++. ..+.+...+......+++++|||+|++|+|+|.
T Consensus 83 ~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~ 162 (847)
T PRK14989 83 ITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG 162 (847)
T ss_pred EEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHH
Confidence 777754 677778889999999999999987665432 133444444455567899999999999999999
Q ss_pred HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC--CCeEEEcCCCcEEeccEEEEc
Q 046865 154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLC 230 (369)
Q Consensus 154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~d~vi~a 230 (369)
.|.+ .+.+|+++++.+++++ .++++..+.+++.|+++||++++++.+.++..++ ....+.+.+|+++++|.||+|
T Consensus 163 ~L~~--~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A 240 (847)
T PRK14989 163 ALKN--LGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240 (847)
T ss_pred HHHH--cCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence 9985 4899999999999887 6899999999999999999999999999886432 244677889999999999999
Q ss_pred CCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--chhHHHHHHHHHHHHHHHHHhhCCCcc
Q 046865 231 TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--KQGFLAQKHAQVAAKNLKVLMVGERES 308 (369)
Q Consensus 231 ~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--~~~~~A~~~g~~~a~~i~~~~~g~~~~ 308 (369)
+|.+||++++...++ .++++|+|.||++||| +.|||||+|||+..... .+.+.|.+||+++|.||+ |.+.
T Consensus 241 ~G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~----g~~~- 312 (847)
T PRK14989 241 TGIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL----GSEN- 312 (847)
T ss_pred CCcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc----CCCc-
Confidence 999999987765554 6788899999999998 79999999999977432 356789999999999997 5431
Q ss_pred ccccccCCC-c-----EEEEeecCCCceEEc-Cccc-ccccccceecccccchHHHHHHcCCCCCcc
Q 046865 309 KMATYWPHS-A-----IAIVSLGRKDAVAQL-PFMT-TIGCVPGLIKSRDLFVGKTRKQMGLEPDVA 367 (369)
Q Consensus 309 ~~~~~~~~~-~-----~~~v~lg~~~~~~~~-~~~~-~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~ 367 (369)
.+.....+ . +-+.+.|...+...- .... ..+...++.|+ ++++++++|||++++|-
T Consensus 313 -~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Kl--v~~~~~~~LlGa~lvGd 376 (847)
T PRK14989 313 -AFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRL--IVSEDNKTLLGAVLVGD 376 (847)
T ss_pred -CCCCcccceEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEE--EEECCCCEEEEEEEECC
Confidence 11211111 0 111222311111000 0011 12233568888 99999999999999984
No 39
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.1e-43 Score=299.54 Aligned_cols=347 Identities=21% Similarity=0.237 Sum_probs=264.8
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-------cc-------ccc------------cCCccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-------SL-------RAM------------VEPSFG 63 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-------~~-------~~~------------~~~~~~ 63 (369)
...+|.+|||||.+|+++|++++ .|.++.|+|..-.+|..+- .+ ... ...++.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 45799999999999999999886 5999999997633332110 00 000 011111
Q ss_pred ccceeccc------------ccc--ccceEEEeeeeeeecc--eEEecCCe--EEeccEEEEccCCCCCCCCChHHHH-H
Q 046865 64 ERSVINHT------------DYL--VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTRTERL-N 124 (369)
Q Consensus 64 ~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~--~v~~~~g~--~~~~d~lviAtG~~~~~p~~~~~~~-~ 124 (369)
+..+..-+ +.+ .+++++.+++.++++. .|...++. .+++.+++||||.+|.+|.++...+ .
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gi 177 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGI 177 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcc
Confidence 11111111 111 2578899999999887 45555664 3788999999999988887664432 2
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
+.+...+....|++++|+|+|++++|+|..++ ..|++++++.|.+.+|..||+.+++.+.+.++..||++|+++.+++
T Consensus 178 dSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~ 255 (478)
T KOG0405|consen 178 DSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTK 255 (478)
T ss_pred ccccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeeccccccee
Confidence 23334445567999999999999999999998 5799999999999999999999999999999999999999999998
Q ss_pred ccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865 205 DSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ 283 (369)
Q Consensus 205 i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~ 283 (369)
+...++ ...+....|..-.+|.++||+|+.||+..|..++++++++++|.|.||+|.+| +.|+||++||+++.-. +
T Consensus 256 v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~--L 332 (478)
T KOG0405|consen 256 VIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKIN--L 332 (478)
T ss_pred eeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEe--c
Confidence 876544 35566666754559999999999999999999999999999999999999998 8999999999998654 5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCceEEcCccc--------------ccc-c
Q 046865 284 GFLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDAVAQLPFMT--------------TIG-C 341 (369)
Q Consensus 284 ~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~~~~~~~~--------------~~g-~ 341 (369)
...|...|+.+++.+... ....++ +|. .+|++..|||++.+|+-++.... +.+ .
T Consensus 333 TPVAiaagr~la~rlF~~---~~~~kl-dY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k 408 (478)
T KOG0405|consen 333 TPVAIAAGRKLANRLFGG---GKDTKL-DYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRK 408 (478)
T ss_pred chHHHhhhhhHHHHhhcC---CCCCcc-ccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCC
Confidence 789999999999988732 222222 332 26889999999999876663211 222 3
Q ss_pred ccceecccccchHHHHHHcCCCCCccC
Q 046865 342 VPGLIKSRDLFVGKTRKQMGLEPDVAH 368 (369)
Q Consensus 342 ~~~~~k~~~~~~~~~~~ilG~~~~~~~ 368 (369)
.+.++|+ ++..++.+++|+|+.|..
T Consensus 409 ~kt~mKl--vc~~~~eKVvG~hm~G~~ 433 (478)
T KOG0405|consen 409 EKTLMKL--VCAGKSEKVVGVHMCGDD 433 (478)
T ss_pred cceEEEE--EEecCCCcEEEEEEecCC
Confidence 4567888 999999999999998854
No 40
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=317.25 Aligned_cols=279 Identities=20% Similarity=0.262 Sum_probs=211.2
Q ss_pred cceEEEECCChHHHHHHHHccc-C--CcEEEEcCCCCcccccccccc-ccCCcccccceecccccc--ccceEEEe-eee
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRA-MVEPSFGERSVINHTDYL--VNGRIVAS-PAI 85 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~-g--~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 85 (369)
+++|||||||+||++||..|++ + .+|+||++++++.+....+.. ++.............+++ .+++++.+ .+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999974 3 589999999877654333321 221111111111112222 36787766 466
Q ss_pred eeec--ceEEecCCeEEeccEEEEccCCCCCCCCCh---H------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHH
Q 046865 86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---T------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGE 154 (369)
Q Consensus 86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~---~------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~ 154 (369)
.+|. +.+.+.+|.++.||+||||||+.|..|+.. . ..+.+...+.+....+++++|+|+|++|+|+|..
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~ 162 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS 162 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 7765 467788888999999999999997654321 1 1133444444455668999999999999999999
Q ss_pred HhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 155 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 155 l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
|.+ .+.+|+++++.+++++. +++.+.+.+.+.++++||++++++.+.+++. ++.+.+.+.+|+++++|.+|+++|.
T Consensus 163 l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 163 ATQ--RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHH--cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 984 48999999999998874 6778889999999999999999999998865 3455677888999999999999999
Q ss_pred CCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc-------chhHHHHHHHHHHHHHHH
Q 046865 234 PVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI-------KQGFLAQKHAQVAAKNLK 299 (369)
Q Consensus 234 ~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~-------~~~~~A~~~g~~~a~~i~ 299 (369)
+||+.++...++ .. +++|.||++||| +.|||||+|||+..+.+ .+.+.|.+||++||+||+
T Consensus 240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhc
Confidence 999887765444 33 356999999998 79999999999964321 345789999999999998
No 41
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.3e-40 Score=308.10 Aligned_cols=337 Identities=21% Similarity=0.288 Sum_probs=236.2
Q ss_pred cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccccccee--cccccc--ccceEEE-eee
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVI--NHTDYL--VNGRIVA-SPA 84 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~ 84 (369)
+++|||||||+||+++|..|++ +.+|+||+++++..+....+.............. ...+++ .+++++. .++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 3699999999999999999863 6899999998865543333322222221111111 122222 2577764 467
Q ss_pred eeeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH-------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHH
Q 046865 85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI 155 (369)
Q Consensus 85 ~~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l 155 (369)
..++.. .+.+ ++..+.||+||+|||+.|..|+++. ..+.++..........++++|+|+|++|+|+|..|
T Consensus 82 ~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L 160 (377)
T PRK04965 82 TDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDL 160 (377)
T ss_pred EEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence 777753 4554 6778999999999999987666432 12334444444556788999999999999999999
Q ss_pred hhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 156 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 156 ~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
.+ .+.+|+++++.+++++. +++++.+.+++.+++.||++++++.+.+++.+++...+.+.+|+++++|.+|+|+|.+
T Consensus 161 ~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 161 CR--AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred Hh--cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 84 48999999999998875 5778899999999999999999999999876655666778889999999999999999
Q ss_pred CCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHHHhhCCCcccccc
Q 046865 235 VGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKVLMVGERESKMAT 312 (369)
Q Consensus 235 p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~ 312 (369)
|+++++...++ ..+ +| +.||++||| +.|||||+|||+..+. ......|.+||+++|+||+ |.+.. +.
T Consensus 239 p~~~l~~~~gl--~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~----g~~~~--~~ 307 (377)
T PRK04965 239 PNTALARRAGL--AVN-RG-IVVDSYLQT-SAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL----GQNTP--LK 307 (377)
T ss_pred cchHHHHHCCC--CcC-CC-EEECCCccc-CCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc----CCCcc--cc
Confidence 99988766554 343 45 999999998 7999999999997532 1245668999999999998 43321 11
Q ss_pred ccC------CCcEEEEeecCCCceEEcCcccccccccceecccccchHHHHHHcCCCCCccC
Q 046865 313 YWP------HSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH 368 (369)
Q Consensus 313 ~~~------~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~ 368 (369)
..+ .+.+-++++|....-. ..+.......++.+. ++. +++++.|+..+|-+
T Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~--~~~-~~~~l~g~~~~g~~ 364 (377)
T PRK04965 308 LPAMLVKVKTPELPLQLAGETQRQD--LRWQINAESQGMVAK--GVD-EAGQLRAFVVSEDR 364 (377)
T ss_pred cCCccEEEecCceeeEECCCCCCCC--ceEEEEeCCCCeEEE--EEc-cCCcEEEEEEEChh
Confidence 111 1223344455432211 112222223454443 444 45889998877643
No 42
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=1.8e-39 Score=286.02 Aligned_cols=321 Identities=31% Similarity=0.417 Sum_probs=231.1
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccc----cccceEEEee
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY----LVNGRIVASP 83 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 83 (369)
...++++|||+|+|++|.+.++.|. ..++|++|++++||.+.|......+..--......+.... -.++.+++++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 3456899999999999999999996 5899999999999998776543332211111111111111 1256788888
Q ss_pred eeeeecc--eE----EecCC----eEEeccEEEEccCCCCC---CCCChH-----HHHHHHHHH----------------
Q 046865 84 AINITEN--EV----LTAEG----RRVVYDYLVIATGHKDP---VPKTRT-----ERLNQYQAE---------------- 129 (369)
Q Consensus 84 ~~~~~~~--~v----~~~~g----~~~~~d~lviAtG~~~~---~p~~~~-----~~~~~~~~~---------------- 129 (369)
...+|+. .| .+.++ ..+.|||||+|+|+.+. +|+... ..+++..+.
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l 210 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGL 210 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Confidence 8888864 33 23344 47899999999999965 454321 111111111
Q ss_pred -HHHHhcCCeEEEEcCChhHHHHHHHHhhh--------CC----CCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEE
Q 046865 130 -NQKIKSARSILIVGGGPTGVELAGEIAVD--------FP----EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDV 196 (369)
Q Consensus 130 -~~~~~~~~~v~vvG~G~~g~e~a~~l~~~--------~~----~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i 196 (369)
.++.+.-.+++||||||+|+|+|.+|.+. +| ..+||+++..+.+|+.|+..+.+..++.+.+.||++
T Consensus 211 ~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~ 290 (491)
T KOG2495|consen 211 SDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDL 290 (491)
T ss_pred ChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhcccee
Confidence 11234457899999999999999999862 22 468999999999999999999999999999999999
Q ss_pred EeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCC--cEEeCCceeeccCCCeEEe
Q 046865 197 KLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDG--MLMVDENLRVKGQKNIFAI 272 (369)
Q Consensus 197 ~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g--~i~vd~~l~~~~~~~i~a~ 272 (369)
.+++.|..+. +..+.+...+| ++|++..++|+||..|.+ +...... ..++.| .+.||++||.++.+||||+
T Consensus 291 ~~~t~Vk~V~--~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp-~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 291 DTGTMVKKVT--EKTIHAKTKDGEIEEIPYGLLVWATGNGPRP-VIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ecccEEEeec--CcEEEEEcCCCceeeecceEEEecCCCCCch-hhhhHhh--cCCccCceeeeeeceeeccCcCceEEe
Confidence 9999998875 33455555666 489999999999998743 2222221 334444 8999999999999999999
Q ss_pred cccCCcccc-chhHHHHHHHHHHHHHHHHHhhCCCc---cc----------cccccCCCcEEEEeecCCCceEEcC
Q 046865 273 GDITDIREI-KQGFLAQKHAQVAAKNLKVLMVGERE---SK----------MATYWPHSAIAIVSLGRKDAVAQLP 334 (369)
Q Consensus 273 GD~~~~~~~-~~~~~A~~~g~~~a~~i~~~~~g~~~---~~----------~~~~~~~~~~~~v~lg~~~~~~~~~ 334 (369)
|||+..+.. ++++.|.+||.++|+|+....++... +. ..+|.-....+++.+|..+++++++
T Consensus 366 GDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~ 441 (491)
T KOG2495|consen 366 GDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLP 441 (491)
T ss_pred ccccccccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCc
Confidence 999965544 48999999999999999766543221 00 1223222345888999999999887
No 43
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.2e-38 Score=319.26 Aligned_cols=277 Identities=17% Similarity=0.258 Sum_probs=216.7
Q ss_pred EEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEe-eeeee
Q 046865 16 VVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVAS-PAINI 87 (369)
Q Consensus 16 vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~ 87 (369)
|||||||+||+++|.+|+ .+++|+|||+++++.+....+..+...... ........+++ .+++++.+ .++.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 699999999999998774 367999999999887665444444332221 11222233333 26788765 57777
Q ss_pred ec--ceEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865 88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156 (369)
Q Consensus 88 ~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~ 156 (369)
|. +.|.+.+|.++.||+||+|||+.|..|+++. ..+.+...+.+.....++++|||+|++|+|+|..|.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~ 160 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ 160 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 75 4788888889999999999999987665432 123344444445567899999999999999999998
Q ss_pred hhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 157 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 157 ~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+ .+.+|+++++.+++++ .+++...+.+++.++++||++++++.+.++..++....+++++|+++++|.||+++|.+|
T Consensus 161 ~--~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 161 N--LGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred h--cCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 5 4899999999999887 578899999999999999999999999888655445567888999999999999999999
Q ss_pred CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--chhHHHHHHHHHHHHHHH
Q 046865 236 GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--KQGFLAQKHAQVAAKNLK 299 (369)
Q Consensus 236 ~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--~~~~~A~~~g~~~a~~i~ 299 (369)
+++++...++ ..+ |.|.||++||| +.|||||+|||+..+.. .+...|.+||+++|.||+
T Consensus 239 n~~la~~~gl--~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 239 NDELAVSAGI--KVN--RGIIVNDSMQT-SDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC 299 (785)
T ss_pred CcHHHHhcCC--ccC--CCEEECCCccc-CCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence 9998766555 343 67999999998 79999999999976442 245568899999999997
No 44
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.9e-38 Score=299.00 Aligned_cols=329 Identities=21% Similarity=0.323 Sum_probs=235.7
Q ss_pred HHHHHccc---CCcEEEEcCCCCccccccccccccCCcccc-cceecc--cccc--ccceEE-Eeeeeeeec--ceEEec
Q 046865 27 LVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINH--TDYL--VNGRIV-ASPAINITE--NEVLTA 95 (369)
Q Consensus 27 ~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~-~~~~~~~~~--~~v~~~ 95 (369)
+||++|++ +.+|+|||+++++.+.+..+..+....... .....+ ..++ .+++++ ...+..++. +++.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 36777753 689999999998876554444333222221 111111 1221 256764 567777774 355443
Q ss_pred C---CeEEe--ccEEEEccCCCCCCCCChH---H------HHHHHHHHHHHH--hcCCeEEEEcCChhHHHHHHHHhhhC
Q 046865 96 E---GRRVV--YDYLVIATGHKDPVPKTRT---E------RLNQYQAENQKI--KSARSILIVGGGPTGVELAGEIAVDF 159 (369)
Q Consensus 96 ~---g~~~~--~d~lviAtG~~~~~p~~~~---~------~~~~~~~~~~~~--~~~~~v~vvG~G~~g~e~a~~l~~~~ 159 (369)
+ ++++. ||+||||||++|..|+++. . .+.+........ ..+++++|+|+|++|+|+|..|++
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~-- 158 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE-- 158 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh--
Confidence 2 35677 9999999999987665432 1 122222222222 357899999999999999999884
Q ss_pred CCCeEEEEEcCcccc-ccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 160 PEKKVTLVHKGSRLL-EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 160 ~~~~v~lv~~~~~~l-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.+.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++.+.++..++ .+ +.+.+|+++++|.+|+|+|++|+++
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHH
Confidence 488999999998874 67888999999999999999999999999987543 23 4567788999999999999999999
Q ss_pred hhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHHHHHhhCCCcccc
Q 046865 239 WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNLKVLMVGERESKM 310 (369)
Q Consensus 239 ~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~ 310 (369)
++...++ .++++|+|.||+++|| +.|+|||+|||+..+. .++++.|.+||+++|+||. |.+....
T Consensus 237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~----g~~~~~~ 309 (427)
T TIGR03385 237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA----GNDIEFK 309 (427)
T ss_pred HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc----CCCCCCC
Confidence 8866554 6778899999999998 7999999999997432 3478899999999999997 4321110
Q ss_pred -cccc-----CCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHHHHHHcCCCCCccC
Q 046865 311 -ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH 368 (369)
Q Consensus 311 -~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~ 368 (369)
.... ..|+++.+|+++.++. ..+... ...+...+++|+ ++++++++|||+|++|.+
T Consensus 310 ~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~~~~~~~ilG~~~~g~~ 383 (427)
T TIGR03385 310 GVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKL--IYEKDTRRILGAQAVGKE 383 (427)
T ss_pred CcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEEEEEEEccc
Confidence 0011 2588999998766442 222211 124566789998 999999999999999987
No 45
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=5.1e-36 Score=271.13 Aligned_cols=274 Identities=23% Similarity=0.303 Sum_probs=194.6
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc-cCCcccc----cce-ecccccc--ccceEEEeee
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-VEPSFGE----RSV-INHTDYL--VNGRIVASPA 84 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~--~~~~~~~~~~ 84 (369)
+||+|||||+||++||..|+ .|.+|+|||+++. +..+...... .-+.+.. ..+ ....+.+ .+++++...+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 68999999999999999986 5999999999863 3211110000 0011110 000 1111111 1567766777
Q ss_pred eeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHHH------HHHHHHHHHHhcCCeEEEEcCChhHHHHHHH
Q 046865 85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------NQYQAENQKIKSARSILIVGGGPTGVELAGE 154 (369)
Q Consensus 85 ~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~ 154 (369)
..++.. .+.+.++.++.||+||+|||+.|..|+++.... ............+++++|+|+|++|+|+|..
T Consensus 80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~ 159 (300)
T TIGR01292 80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY 159 (300)
T ss_pred EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence 777654 456667788999999999999987665542210 0000111223457899999999999999999
Q ss_pred HhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcC---CC--cEEeccEEE
Q 046865 155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTS---TG--DTIKADCHF 228 (369)
Q Consensus 155 l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~i~~d~vi 228 (369)
|.+ .+.+|+++++.+.+. ....+.+.++++ ||++++++.+.+++.++....+++. ++ +++++|.+|
T Consensus 160 l~~--~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 160 LTR--IAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HHh--hcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence 984 389999999987652 244566777777 9999999999988754432233331 23 579999999
Q ss_pred EcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHH
Q 046865 229 LCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL 301 (369)
Q Consensus 229 ~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~ 301 (369)
+|+|++|+.+++... + .++++|++.||+++++ ++||||++|||++. .++.+..|+.||+.||.+|.+.
T Consensus 232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhh
Confidence 999999999888765 3 5678899999999998 89999999999974 2346789999999999999754
No 46
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-37 Score=261.64 Aligned_cols=349 Identities=18% Similarity=0.174 Sum_probs=247.3
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcC---CCCccccccc-------------------------------
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP---KEYFEITWAS------------------------------- 53 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~---~~~~~~~~~~------------------------------- 53 (369)
..+..||++|||||.+||+||++++ .|.+|.++|- .+ .|..|..
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP-~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ky 93 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTP-QGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKY 93 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCC-CCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999987 5999999983 22 2211210
Q ss_pred ---------------cccccCCcccccceeccccc-cccceEEEeeeeeeecceEEec--CC--eEEeccEEEEccCCCC
Q 046865 54 ---------------LRAMVEPSFGERSVINHTDY-LVNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKD 113 (369)
Q Consensus 54 ---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lviAtG~~~ 113 (369)
+...++..+.........++ -+.+.+++....++|++++... ++ +.+++++++||||.+|
T Consensus 94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 00000000000000000000 1245667788888888866443 33 4689999999999999
Q ss_pred CCCCChHH--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh
Q 046865 114 PVPKTRTE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191 (369)
Q Consensus 114 ~~p~~~~~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~ 191 (369)
+.|+++.. .-.+.+++......|.+-+|||+|++++|+|.+|+ ..|.+||+..|+ -+|..||.++++.+.+.+++
T Consensus 174 rYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~ 250 (503)
T KOG4716|consen 174 RYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEE 250 (503)
T ss_pred CCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHH
Confidence 98887642 11233444445567888899999999999999998 568999999887 47789999999999999999
Q ss_pred CCcEEEeCceeeeccCCC-CCeEEEcC---CCc--EEeccEEEEcCCCCCCchhhcccccCCCCC-CCCcEEeCCceeec
Q 046865 192 KKVDVKLGQRVNLDSVSE-GSDTYLTS---TGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLD-TDGMLMVDENLRVK 264 (369)
Q Consensus 192 ~gv~i~~~~~v~~i~~~~-~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~-~~g~i~vd~~l~~~ 264 (369)
+||++...+...+++..+ +...|... .++ +-++|.|+||.|+.++++-+....+++..+ ..|.|.+|+.-+|
T Consensus 251 ~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t- 329 (503)
T KOG4716|consen 251 RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT- 329 (503)
T ss_pred hCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-
Confidence 999999998877777544 34444322 222 457999999999999999998888888775 4688999999888
Q ss_pred cCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcc------ccccccCCCcEEEEeecCCCceEEcCcc--
Q 046865 265 GQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERES------KMATYWPHSAIAIVSLGRKDAVAQLPFM-- 336 (369)
Q Consensus 265 ~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~------~~~~~~~~~~~~~v~lg~~~~~~~~~~~-- 336 (369)
+.|+|||+||+.... +.+...|++.|+.+|+.|.. |.... +...|.| -+.+++||.+..|+..+...
T Consensus 330 ~vp~vyAvGDIl~~k-pELTPvAIqsGrlLa~Rlf~---gs~q~~dy~~V~TTVFTP-LEy~c~GlsEE~Ai~k~g~dni 404 (503)
T KOG4716|consen 330 NVPYVYAVGDILEDK-PELTPVAIQSGRLLARRLFA---GSTQLMDYDDVATTVFTP-LEYGCVGLSEEDAIEKYGEDNI 404 (503)
T ss_pred CCCceEEecceecCC-cccchhhhhhchHHHHHHhc---CcceeeeccCCceeeecc-hhccccCCCHHHHHHHhCcccE
Confidence 799999999998653 34678999999999999973 22111 1123333 46788999888776543221
Q ss_pred ------------ccc--ccccceecccccchH-HHHHHcCCCCCccCC
Q 046865 337 ------------TTI--GCVPGLIKSRDLFVG-KTRKQMGLEPDVAHA 369 (369)
Q Consensus 337 ------------~~~--g~~~~~~k~~~~~~~-~~~~ilG~~~~~~~~ 369 (369)
.+. +....++|. ++.+ +..+++|.|++|.+|
T Consensus 405 evfH~~f~P~E~~ipqrd~~~CY~K~--vc~r~~~qkv~G~H~lgPnA 450 (503)
T KOG4716|consen 405 EVFHSYFKPLEYTIPQRDVRHCYLKA--VCERDEDQKVLGLHILGPNA 450 (503)
T ss_pred EEeeccccceEEEcccccCCceEEEE--eecccCCceEEEEEEecCch
Confidence 122 223446676 8866 689999999999876
No 47
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.2e-34 Score=262.46 Aligned_cols=282 Identities=16% Similarity=0.180 Sum_probs=193.7
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc---cc--CCcccccce----eccccccccceEE
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---MV--EPSFGERSV----INHTDYLVNGRIV 80 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~---~~--~~~~~~~~~----~~~~~~~~~~~~~ 80 (369)
...+||+|||||||||+||..|+ +|+++++||+.+ .+..+..... +. ........+ ....+.+ +.++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEII 81 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEE
Confidence 45789999999999999999986 599999999653 3321111100 00 000111000 1111111 23444
Q ss_pred Eeeeeeeec--ce--EEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHH
Q 046865 81 ASPAINITE--NE--VLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVE 150 (369)
Q Consensus 81 ~~~~~~~~~--~~--v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e 150 (369)
.+++..++. +. +.. +...+.||+||+|||+.|..|+++... +..+.........+++++|+|+|++|+|
T Consensus 82 ~~~v~~v~~~~~~~~v~~-~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e 160 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTG-DSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE 160 (321)
T ss_pred eeEEEEEEecCCeEEEEe-cCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHH
Confidence 444444543 22 332 234689999999999998777654321 1111111223356899999999999999
Q ss_pred HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCC------CcEEe
Q 046865 151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTST------GDTIK 223 (369)
Q Consensus 151 ~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------g~~i~ 223 (369)
+|..|.+ .+.+|+++++.+.+. .++.+.+.+++.|++.||++++++.+.+++.++..+ .+++.+ .++++
T Consensus 161 ~A~~l~~--~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 161 EALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred HHHHHHh--hCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence 9999985 389999999987652 345677888899999999999999999987554322 344332 13799
Q ss_pred ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-----ceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHH
Q 046865 224 ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-----NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298 (369)
Q Consensus 224 ~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-----~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i 298 (369)
+|.||+++|++||.+++.. .+ .+ ++|+|.||+ ++|| +.|+|||+|||++.+ .++...|+.+|..||..|
T Consensus 237 ~D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~-~~~~~~A~~~g~~Aa~~~ 310 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDA 310 (321)
T ss_pred CCEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC-cceEEEEehhHHHHHHHH
Confidence 9999999999999987654 34 34 468999998 6777 799999999999753 234566999999999999
Q ss_pred HHHhhCC
Q 046865 299 KVLMVGE 305 (369)
Q Consensus 299 ~~~~~g~ 305 (369)
.+.+.+.
T Consensus 311 ~~~l~~~ 317 (321)
T PRK10262 311 ERYLDGL 317 (321)
T ss_pred HHHHHhc
Confidence 9888653
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.2e-33 Score=274.10 Aligned_cols=280 Identities=18% Similarity=0.220 Sum_probs=191.5
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccccc-CCcc---ccccee-cccccc--ccceEEEee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSF---GERSVI-NHTDYL--VNGRIVASP 83 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~-~~~~---~~~~~~-~~~~~~--~~~~~~~~~ 83 (369)
..|||+|||||||||+||..|+ +|++|+|||+++ ++..+....... .+.. ....+. .+.... .+++++.++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~ 81 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAE 81 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccE
Confidence 3599999999999999999986 599999999975 332211110000 0100 000111 111111 156777777
Q ss_pred eeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHHHHH------HHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865 84 AINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGVELAG 153 (369)
Q Consensus 84 ~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~------~~~~~~~~~~~~~v~vvG~G~~g~e~a~ 153 (369)
+..++.. .+.+.++ .+.+++||+|||+.|..|+++...... +.........+++++|+|||++|+|+|.
T Consensus 82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~ 160 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAV 160 (555)
T ss_pred EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHH
Confidence 7777642 3444444 689999999999998877665322100 0111123346899999999999999999
Q ss_pred HHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---cCCCcEE----eccE
Q 046865 154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---TSTGDTI----KADC 226 (369)
Q Consensus 154 ~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~i----~~d~ 226 (369)
.|.+ .+.+|+++++.+++.. ++ ....+.++..||++++++.|.++..++....+. ..+|++. ++|.
T Consensus 161 ~L~~--~g~~Vtli~~~~~~~~--~~---~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~ 233 (555)
T TIGR03143 161 FLTR--YASKVTVIVREPDFTC--AK---LIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDA 233 (555)
T ss_pred HHHc--cCCEEEEEEeCCcccc--CH---HHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccc
Confidence 9873 4899999999886532 11 222333445699999999999887543221222 3456543 3666
Q ss_pred ----EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHh
Q 046865 227 ----HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLM 302 (369)
Q Consensus 227 ----vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~ 302 (369)
|++++|++|+++++.. . +.++++|+|.||+++|| +.|+|||+|||+... ++....|+.||+.||.||.+++
T Consensus 234 ~~~~Vi~a~G~~Pn~~l~~~-~--l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 234 GTFGVFVFVGYAPSSELFKG-V--VELDKRGYIPTNEDMET-NVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred cceEEEEEeCCCCChhHHhh-h--cccCCCCeEEeCCcccc-CCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHH
Confidence 9999999999998765 2 36788899999999998 799999999998532 2345789999999999999888
Q ss_pred hCC
Q 046865 303 VGE 305 (369)
Q Consensus 303 ~g~ 305 (369)
.+.
T Consensus 309 ~~~ 311 (555)
T TIGR03143 309 KEL 311 (555)
T ss_pred Hhh
Confidence 654
No 49
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=249.36 Aligned_cols=280 Identities=22% Similarity=0.345 Sum_probs=216.4
Q ss_pred CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccC---CcccccceeccccccccceEE-Eeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVE---PSFGERSVINHTDYLVNGRIV-ASPA 84 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (369)
..++++|||+|++|..|+..++. -.+++|+-++.++.+....+..... .....+....+++. +++++ ...+
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~--gIe~~~~t~v 150 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEK--GIELILGTSV 150 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhc--CceEEEccee
Confidence 36799999999999999998874 3689999888887776655544332 22222222222222 45654 3445
Q ss_pred eeee--cceEEecCCeEEeccEEEEccCCCC---CCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865 85 INIT--ENEVLTAEGRRVVYDYLVIATGHKD---PVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAG 153 (369)
Q Consensus 85 ~~~~--~~~v~~~~g~~~~~d~lviAtG~~~---~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~ 153 (369)
+.+| .+++.+.+|+++.|++|+||||+.+ .+|+...+ .+.+...+.........++++|+|++|+|++.
T Consensus 151 ~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa 230 (478)
T KOG1336|consen 151 VKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAA 230 (478)
T ss_pred EEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHH
Confidence 5555 5689999999999999999999964 45554422 23444444555566888999999999999999
Q ss_pred HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC--CCeEEEcCCCcEEeccEEEEc
Q 046865 154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLC 230 (369)
Q Consensus 154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~d~vi~a 230 (369)
+|... +.+||++++.+.+++ .+.+.+.+.+++.++++||++++++.+.+++... ....|.+.+|+++++|.|++.
T Consensus 231 ~l~~~--~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~G 308 (478)
T KOG1336|consen 231 ALVSK--AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVG 308 (478)
T ss_pred HHHhc--CceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEe
Confidence 99853 899999999999988 6788999999999999999999999999887654 345788999999999999999
Q ss_pred CCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc--------hhHHHHHHHHHHHHHHH
Q 046865 231 TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK--------QGFLAQKHAQVAAKNLK 299 (369)
Q Consensus 231 ~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~--------~~~~A~~~g~~~a~~i~ 299 (369)
+|.+||++++.. +..++++|+|.||+++|| +.|||||+||+++.|... -...|..+|+.+...|.
T Consensus 309 iG~~p~t~~~~~---g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~ 381 (478)
T KOG1336|consen 309 IGIKPNTSFLEK---GILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIK 381 (478)
T ss_pred eccccccccccc---cceecccCCEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhh
Confidence 999999999885 235789999999999999 699999999999886432 22456677776555554
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=9.9e-34 Score=272.71 Aligned_cols=278 Identities=20% Similarity=0.232 Sum_probs=194.0
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc---cccccCC-ccccccee-cccccc--ccceEEE-
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRAMVEP-SFGERSVI-NHTDYL--VNGRIVA- 81 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~~- 81 (369)
...+||+||||||||++||..|+ .|++|+||++. +|..+.. +..+... ......+. ...+.+ .++++..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 45799999999999999999987 49999999853 4332211 1111000 00000010 111111 1455544
Q ss_pred eeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHHHH------HHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865 82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN------QYQAENQKIKSARSILIVGGGPTGVEL 151 (369)
Q Consensus 82 ~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~------~~~~~~~~~~~~~~v~vvG~G~~g~e~ 151 (369)
..+..++.. .+.+.++..+.||++|+|||+.|..|+++..... ...........+++++|+|+|++|+|+
T Consensus 288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~ 367 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA 367 (515)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence 345555432 4566677889999999999999776655432100 001111223457899999999999999
Q ss_pred HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcCC---C--cEEec
Q 046865 152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTST---G--DTIKA 224 (369)
Q Consensus 152 a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~i~~ 224 (369)
|..|+. .+.+|+++++.+.+.. ...+.+.+++ .||++++++.+.+++.+++.+ .+++.+ + +++++
T Consensus 368 A~~L~~--~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 368 AIDLAG--IVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred HHHHHh--cCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence 999974 4889999998876632 3456677776 599999999999887654433 244432 2 46999
Q ss_pred cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865 225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~ 303 (369)
|.|++++|++|+++++... +.++++|+|.||+++|| +.|+|||+|||+..+. ++...|+.+|..||.+|..++.
T Consensus 440 D~vi~a~G~~Pn~~~l~~~---~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~-~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDA---VELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY-KQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CEEEEEeCCcCCchHHhhh---cccCCCCeEEECCCCCC-CCCCEEEcccccCCcc-ceEEEEEccHHHHHHHHHHHHh
Confidence 9999999999999988754 36778899999999998 7999999999997643 3456899999999999987653
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.1e-33 Score=266.03 Aligned_cols=274 Identities=19% Similarity=0.195 Sum_probs=185.3
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeee
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAI 85 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 85 (369)
....++|+|||||++|+++|..|+ .|++|+|+|+++..+..+. .+..+ ...........+.+ .+++++.+..+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEF---RLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCc---cCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 345689999999999999999986 5999999999876653211 11100 01111111111111 25666665533
Q ss_pred eeecceEEecCCeEEeccEEEEccCC-CCCCCCC---hHHHHH---HHHHHHH------------HHhcCCeEEEEcCCh
Q 046865 86 NITENEVLTAEGRRVVYDYLVIATGH-KDPVPKT---RTERLN---QYQAENQ------------KIKSARSILIVGGGP 146 (369)
Q Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~p~~---~~~~~~---~~~~~~~------------~~~~~~~v~vvG~G~ 146 (369)
. +.+.+.+. ...||+|++|||+ .|..|++ +...+. ++..... ....+++++|||+|.
T Consensus 207 ~---~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 282 (449)
T TIGR01316 207 G---KTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGN 282 (449)
T ss_pred C---CcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCH
Confidence 1 22333322 3579999999998 5654433 221111 1111111 123468999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEcC-------
Q 046865 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLTS------- 217 (369)
Q Consensus 147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~------- 217 (369)
+|+|+|..+.+ .+.+|+++++.++.- + .......+.+++.||++++++.+.++..++ +.+ .+++.
T Consensus 283 ~a~d~A~~l~~--~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 356 (449)
T TIGR01316 283 TAVDSARTALR--LGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ 356 (449)
T ss_pred HHHHHHHHHHH--cCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCc
Confidence 99999999874 488999999876521 1 222334466888999999999998876432 222 23221
Q ss_pred --CC-----------cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865 218 --TG-----------DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG 284 (369)
Q Consensus 218 --~g-----------~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~ 284 (369)
+| .++++|.||+|+|+.|++.++...++ .++++|+|.||+++|| +.|+|||+|||+..+ .+.
T Consensus 357 ~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~--~~v 431 (449)
T TIGR01316 357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGA--ATV 431 (449)
T ss_pred CCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCc--HHH
Confidence 22 26999999999999999887765544 6778899999999998 799999999999654 367
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046865 285 FLAQKHAQVAAKNLKVL 301 (369)
Q Consensus 285 ~~A~~~g~~~a~~i~~~ 301 (369)
..|+.+|+.||.+|.++
T Consensus 432 ~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 432 IRAMGQGKRAAKSINEY 448 (449)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999999999764
No 52
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=3.3e-33 Score=262.13 Aligned_cols=281 Identities=22% Similarity=0.277 Sum_probs=229.9
Q ss_pred cceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCccc-ccceeccccccc--cceEEEe-ee
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYLV--NGRIVAS-PA 84 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~~ 84 (369)
+.++||||.|.+|..+..++. .-++|+++-.+++..+....++..+.+... .+..+...+|+. +++++.+ .+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 578999999999999997763 258999999999988888888877766433 334444555654 5666544 57
Q ss_pred eeeec--ceEEecCCeEEeccEEEEccCCCCCCCCCh---------HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865 85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------TERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153 (369)
Q Consensus 85 ~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~ 153 (369)
+.+|+ +.|.++.|+++.||+|++||||.|.+|+++ ...+.+...+....+..++.+|||||..|+|.|.
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~ 162 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR 162 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHH
Confidence 77775 478888999999999999999998877654 2345555566555666777899999999999999
Q ss_pred HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865 154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232 (369)
Q Consensus 154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G 232 (369)
.|.+ .|.++++++-.+.++. .+|+.....+++.++++|++++++...+++..++....+.++||..+++|.|++|+|
T Consensus 163 ~L~~--~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G 240 (793)
T COG1251 163 GLKD--LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG 240 (793)
T ss_pred HHHh--CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence 9984 5999999999988876 688899999999999999999999998888765556788999999999999999999
Q ss_pred CCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHH
Q 046865 233 KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKV 300 (369)
Q Consensus 233 ~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~ 300 (369)
.+||.++..+.++ ..++ .|.||++||| ++|+|||+|+|+.+.. .-+...+.+|++++|.++..
T Consensus 241 IrPn~ela~~aGl--avnr--GIvvnd~mqT-sdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 241 IRPNDELAKEAGL--AVNR--GIVVNDYMQT-SDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCG 305 (793)
T ss_pred cccccHhHHhcCc--CcCC--Ceeecccccc-cCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhcc
Confidence 9999999888876 4444 5999999999 7999999999997643 22445788999999999984
No 53
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-32 Score=259.94 Aligned_cols=279 Identities=19% Similarity=0.205 Sum_probs=184.8
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCccccc-ceecccccc--ccceEEEeee
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGER-SVINHTDYL--VNGRIVASPA 84 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~ 84 (369)
....+||+||||||||++||..|+ .|++|+|+|+.+.+|..+. .+..+ ..+.. ......+++ .++++..+..
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~l~~~~~~~~~~~~~~~~gv~i~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEF---RLPKETVVKKEIENIKKLGVKIETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCc---cCCccHHHHHHHHHHHHcCCEEEcCCE
Confidence 446789999999999999999987 5999999999876653221 11111 01111 111111111 1455555443
Q ss_pred eeeecceEEecCC-eEEeccEEEEccCC-CCCCCCCh---HHHHH---HHHHHHH-----------HHhcCCeEEEEcCC
Q 046865 85 INITENEVLTAEG-RRVVYDYLVIATGH-KDPVPKTR---TERLN---QYQAENQ-----------KIKSARSILIVGGG 145 (369)
Q Consensus 85 ~~~~~~~v~~~~g-~~~~~d~lviAtG~-~~~~p~~~---~~~~~---~~~~~~~-----------~~~~~~~v~vvG~G 145 (369)
+. +.+...+. ..+.||+|+||||+ .|..|+++ ...+. ++..... ....+++++|||+|
T Consensus 214 v~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG 290 (464)
T PRK12831 214 VG---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGG 290 (464)
T ss_pred EC---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCc
Confidence 21 12223232 34579999999998 46544432 22221 1211110 12457899999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc-------
Q 046865 146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT------- 216 (369)
Q Consensus 146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------- 216 (369)
++|+|+|..+.. .+.+|+++++.+. ..++... ..+ +.+++.||++++++.+.++..++ +.+ .+++
T Consensus 291 ~va~d~A~~l~r--~Ga~Vtlv~r~~~--~~m~a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 364 (464)
T PRK12831 291 NVAMDAARTALR--LGAEVHIVYRRSE--EELPARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGE 364 (464)
T ss_pred HHHHHHHHHHHH--cCCEEEEEeecCc--ccCCCCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecC
Confidence 999999998874 4888999998653 1112121 222 34667899999999988875432 222 1211
Q ss_pred --C---------CCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCccccc
Q 046865 217 --S---------TGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREIK 282 (369)
Q Consensus 217 --~---------~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~~ 282 (369)
. +|+ ++++|.||+|+|..|++.++... .++.++++|+|.||++ ++| +.|+|||+|||+..+.
T Consensus 365 ~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~-- 440 (464)
T PRK12831 365 PDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTT-KGLKINKRGCIVADEETGLT-SKEGVFAGGDAVTGAA-- 440 (464)
T ss_pred cCCCCCccceecCCceEEEECCEEEECCCCCCChhhhccc-CCceECCCCcEEECCCCCcc-CCCCEEEeCCCCCCch--
Confidence 1 222 69999999999999998876542 2336778899999998 887 7999999999986543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhC
Q 046865 283 QGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 283 ~~~~A~~~g~~~a~~i~~~~~g 304 (369)
+...|+.+|+.||.+|.+.|.+
T Consensus 441 ~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 441 TVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999988865
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.9e-32 Score=264.18 Aligned_cols=280 Identities=21% Similarity=0.237 Sum_probs=195.9
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc---cccC-Cccccccee-ccccccc--cceEEE-
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---AMVE-PSFGERSVI-NHTDYLV--NGRIVA- 81 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~--~~~~~~- 81 (369)
...+||+||||||||++||.+|+ .|++|+||++. +|..+.... .+.. +......+. ....... ++++..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~ 286 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNL 286 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcC
Confidence 44789999999999999999986 59999999874 443322110 0000 000000000 0111111 344443
Q ss_pred eeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHH-H-----HHHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865 82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER-L-----NQYQAENQKIKSARSILIVGGGPTGVEL 151 (369)
Q Consensus 82 ~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~-~-----~~~~~~~~~~~~~~~v~vvG~G~~g~e~ 151 (369)
.++..++.. .+.+.++.++.||++|+|||+.|..|+++... + ............+++++|+|+|++|+|+
T Consensus 287 ~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~ 366 (517)
T PRK15317 287 QRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEA 366 (517)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHH
Confidence 355566432 56666778899999999999997766554221 1 0011111223467899999999999999
Q ss_pred HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcC---CC--cEEec
Q 046865 152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTS---TG--DTIKA 224 (369)
Q Consensus 152 a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~i~~ 224 (369)
|..|+. .+.+|+++++.+.+.. .+.+.+.+.+ .||++++++.+.++..+++.+ .+.+. +| +++++
T Consensus 367 A~~L~~--~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~ 438 (517)
T PRK15317 367 AIDLAG--IVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLEL 438 (517)
T ss_pred HHHHHh--cCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEc
Confidence 999984 4899999999876532 2456666665 599999999999987654433 23432 33 36999
Q ss_pred cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
|.+++++|++||++++... +.++++|+|.||+++|| +.|+|||+|||+..+ .++...|+.+|..||.++...+..
T Consensus 439 D~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 439 EGVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred CEEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 9999999999999998764 36778899999999997 799999999999764 346789999999999999887754
Q ss_pred C
Q 046865 305 E 305 (369)
Q Consensus 305 ~ 305 (369)
.
T Consensus 514 ~ 514 (517)
T PRK15317 514 N 514 (517)
T ss_pred c
Confidence 3
No 55
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=243.46 Aligned_cols=275 Identities=23% Similarity=0.289 Sum_probs=197.7
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCc-EEEEcCCCCccccccc--cccccCCcccc----ccee-ccccc--cccceEE
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWAS--LRAMVEPSFGE----RSVI-NHTDY--LVNGRIV 80 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~~~~~~~--~~~~~~~~~~~----~~~~-~~~~~--~~~~~~~ 80 (369)
+.+||+|||||||||+||.++. .+++ ++|+|+...-+.+... ...+ |.+.. ..+. ...+. .-+++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~veny--pg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENY--PGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCC--CCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 4699999999999999999986 4888 6666664332221111 1110 11111 0111 11111 1256666
Q ss_pred Eeeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHH
Q 046865 81 ASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVE 150 (369)
Q Consensus 81 ~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e 150 (369)
...+..++.. .|.+.++. +++++||||||..+..|+.+.+. +..+..... ....++++|+|||.+++|
T Consensus 80 ~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve 157 (305)
T COG0492 80 EDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVE 157 (305)
T ss_pred EEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHH
Confidence 6767666543 56777776 99999999999997766553211 111222223 566789999999999999
Q ss_pred HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCC--C--cEEecc
Q 046865 151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTST--G--DTIKAD 225 (369)
Q Consensus 151 ~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~d 225 (369)
.|.+|.. .+++|++++|.+.+- ..+.+.+.++++ +|++++++.+.++..++ ...+++.+ | +.+++|
T Consensus 158 ~Al~L~~--~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~ 228 (305)
T COG0492 158 EALYLSK--IAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVD 228 (305)
T ss_pred HHHHHHH--hcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEec
Confidence 9999985 378899999998773 356677777766 89999999999987655 23444443 3 378999
Q ss_pred EEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 226 CHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 226 ~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
-++++.|..|+++++...+. ++++|+|.+|+.++| +.|+|||+||++..+. ++...|..+|..||.++.+.+..
T Consensus 229 gvf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~-rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 229 GVFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG-RQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred eEEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc-cEEeehhhhHHHHHHHHHHHhhh
Confidence 99999999999998877653 789999999999998 8999999999998754 36678899999999999877653
No 56
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=8e-32 Score=268.20 Aligned_cols=272 Identities=23% Similarity=0.286 Sum_probs=185.7
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc--cccceecccccc--ccceEEEeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF--GERSVINHTDYL--VNGRIVASPAI 85 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~ 85 (369)
...++|+||||||||++||+.|+ +|++|+|+|+++.+|..... . -|.+ +........+++ .++++..+..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~---~-IP~~Rlp~evL~~die~l~~~GVe~~~gt~V 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN---I-IPQFRIPAELIQHDIEFVKAHGVKFEFGCSP 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee---e-cccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence 45689999999999999999997 59999999998877643211 1 1111 111111111111 15666655443
Q ss_pred eeecceEEecCCeEEeccEEEEccCCCCC----CCCCh------HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHH
Q 046865 86 NITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI 155 (369)
Q Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~------~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l 155 (369)
. +...+.+...||+||||||+.+. +|+.. .+.+..+.........+++|+|||||.+|+|+|..+
T Consensus 613 d-----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a 687 (1019)
T PRK09853 613 D-----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAA 687 (1019)
T ss_pred E-----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHH
Confidence 2 23334455679999999999842 33321 011111211122335689999999999999999877
Q ss_pred hhhCCC-CeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-----------------EEc
Q 046865 156 AVDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-----------------YLT 216 (369)
Q Consensus 156 ~~~~~~-~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-----------------v~~ 216 (369)
.+ ..+ .+|+++.|.++ .++.. .+.+.+.+ +.||+++.++.+.++..+ +.+. +.+
T Consensus 688 ~R-lgGakeVTLVyRr~~~~MPA~----~eEle~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~t 760 (1019)
T PRK09853 688 LR-VPGVEKVTVVYRRTKQEMPAW----REEYEEAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVET 760 (1019)
T ss_pred Hh-cCCCceEEEEEccCccccccc----HHHHHHHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeC
Confidence 63 334 58999998763 44433 33344433 479999999888777532 2221 222
Q ss_pred CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHH
Q 046865 217 STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAK 296 (369)
Q Consensus 217 ~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~ 296 (369)
.++.++++|.||+|+|..|+++++...++ .++++|++.||+++|| +.|+|||+|||+..+. +...|+.||+.||+
T Consensus 761 g~~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~--tvv~Ai~qGr~AA~ 835 (1019)
T PRK09853 761 GETVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPS--TIVAAIADARRAAD 835 (1019)
T ss_pred CCeEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCch--HHHHHHHHHHHHHH
Confidence 33458999999999999999998866544 5678899999999998 7999999999986543 67899999999999
Q ss_pred HHHHHhh
Q 046865 297 NLKVLMV 303 (369)
Q Consensus 297 ~i~~~~~ 303 (369)
||+....
T Consensus 836 nI~~~~~ 842 (1019)
T PRK09853 836 AILSREG 842 (1019)
T ss_pred HHhhhcC
Confidence 9987554
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=4e-32 Score=250.30 Aligned_cols=281 Identities=19% Similarity=0.129 Sum_probs=184.1
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCccccccee-cccccc-ccceEEEeeee
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVI-NHTDYL-VNGRIVASPAI 85 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 85 (369)
+...++|+|||||++|+++|..|+ .|++|++||+.+.++..+. ..... ........ ...++. .++++..+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~~~~~~v 91 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF---RIPIERVREGVKELEEAGVVFHTRTKV 91 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc---ccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence 334679999999999999999986 5999999999887653221 11000 00100000 001111 14555544333
Q ss_pred eee-c------c-----eEEecCCeEEeccEEEEccCCC-CCCCCCh---HHHHHHHHHHHH-------------H--Hh
Q 046865 86 NIT-E------N-----EVLTAEGRRVVYDYLVIATGHK-DPVPKTR---TERLNQYQAENQ-------------K--IK 134 (369)
Q Consensus 86 ~~~-~------~-----~v~~~~g~~~~~d~lviAtG~~-~~~p~~~---~~~~~~~~~~~~-------------~--~~ 134 (369)
..+ . . .+.. ++..+.||+||||||+. +..|+++ ...+.+...... . ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T PRK12770 92 CCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV 170 (352)
T ss_pred eeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence 211 1 0 1111 11247899999999994 5544332 211111111100 0 01
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT 213 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 213 (369)
..++++|+|+|++|+|+|..|.. .+.+ |+++++.+... ........+.|+++||++++++.+.+++.++....
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~ 244 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRTINE----APAGKYEIERLIARGVEFLELVTPVRIIGEGRVEG 244 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecchhh----CCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence 24799999999999999999874 3665 99999876421 12224455679999999999999888764432222
Q ss_pred EEc--------------------CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865 214 YLT--------------------STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG 273 (369)
Q Consensus 214 v~~--------------------~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G 273 (369)
+++ .+++++++|.+|+++|++|++.+... .+++.++++|++.||+++++ +.|+|||+|
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~-~~g~~~~~~g~i~vd~~~~t-~~~~vyaiG 322 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE-CLGIELNRKGEIVVDEKHMT-SREGVFAAG 322 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc-ccCceecCCCcEeeCCCccc-CCCCEEEEc
Confidence 221 12347999999999999999876554 13446778899999999998 799999999
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
||+..+. ....|+.||+.+|.+|.+.|..
T Consensus 323 D~~~~~~--~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 323 DVVTGPS--KIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred ccccCcc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 9997543 6789999999999999987753
No 58
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=7.1e-32 Score=256.87 Aligned_cols=278 Identities=19% Similarity=0.235 Sum_probs=186.4
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeee
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAI 85 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 85 (369)
....++|+|||||++|+++|..|+ +|++|+|+|+++.++..+.. +..+ ...........+++ .++++..+..+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEF---RLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCc---cCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 345689999999999999999986 59999999998876532111 1000 00111111111111 14566555443
Q ss_pred eeecceEEecCCeEEeccEEEEccCCC-CCC---CCChHHHHH---HHHHHHH------HHhcCCeEEEEcCChhHHHHH
Q 046865 86 NITENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTRTERLN---QYQAENQ------KIKSARSILIVGGGPTGVELA 152 (369)
Q Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~---p~~~~~~~~---~~~~~~~------~~~~~~~v~vvG~G~~g~e~a 152 (369)
. +.+.+.+. .+.||+||+|||+. +.. |+.....+. ++..... ....+++++|||+|.+|+|+|
T Consensus 214 ~---~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 G---RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred C---CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHH
Confidence 1 12222222 37899999999986 443 333211111 1111111 123578999999999999999
Q ss_pred HHHhhhCCCC-eEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEc-----------
Q 046865 153 GEIAVDFPEK-KVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLT----------- 216 (369)
Q Consensus 153 ~~l~~~~~~~-~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~----------- 216 (369)
..+.. .+. +|+++++.+. .++. .....+.+++.||++++++.+.++..+++. +.+..
T Consensus 290 ~~l~~--~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 362 (457)
T PRK11749 290 RTAKR--LGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGR 362 (457)
T ss_pred HHHHH--cCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCC
Confidence 99874 355 8999998654 2322 122356788899999999999888654432 33221
Q ss_pred ------CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccchhHHHHH
Q 046865 217 ------STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQGFLAQK 289 (369)
Q Consensus 217 ------~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~ 289 (369)
.+++++++|.||+|+|.+|+..++.. ..++.++++|+|.||+ +++| +.|+|||+|||+.. +++...|+.
T Consensus 363 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~--~~~~~~A~~ 438 (457)
T PRK11749 363 RRVPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTG--AATVVWAVG 438 (457)
T ss_pred cccCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCC--chHHHHHHH
Confidence 12347999999999999999776542 2234678889999998 7777 79999999999954 346789999
Q ss_pred HHHHHHHHHHHHhhCC
Q 046865 290 HAQVAAKNLKVLMVGE 305 (369)
Q Consensus 290 ~g~~~a~~i~~~~~g~ 305 (369)
||+.||.+|.+.+.|+
T Consensus 439 ~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 439 DGKDAAEAIHEYLEGA 454 (457)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998875
No 59
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=1.7e-30 Score=247.79 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=182.7
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN 86 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (369)
...++|+|||||+||+++|..|+ +|++|+|||+++.++..+. .+..+ ...........+++ .++++..+..+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDF---KLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcc---cCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 45689999999999999999986 5999999999887653211 11110 00101111111111 145665554433
Q ss_pred eecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHHHH---HHHH-----HH------HHhcCCeEEEEcCChhH
Q 046865 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQ---YQAE-----NQ------KIKSARSILIVGGGPTG 148 (369)
Q Consensus 87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~~~---~~~~-----~~------~~~~~~~v~vvG~G~~g 148 (369)
.+. .. +.....||++++|||+. +. +|+.+...+.. +... .. ....+++++|||+|++|
T Consensus 218 ~~~---~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g 293 (471)
T PRK12810 218 KDI---TA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTG 293 (471)
T ss_pred CcC---CH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHH
Confidence 221 01 11235799999999997 44 44432222111 1110 00 12357899999999999
Q ss_pred HHHHHHHhhhCCCCeEEEEEcCccccccC-C----cchHH-HHHHHHHhCCcEEEeCceeeeccCCCCCeE-EE-----c
Q 046865 149 VELAGEIAVDFPEKKVTLVHKGSRLLEFI-G----PKAGD-KTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YL-----T 216 (369)
Q Consensus 149 ~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-~----~~~~~-~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~-----~ 216 (369)
+|+|..+.. ....+|+++++.+...... + +.... ...+.+++.||++++++.+.++..+++.++ ++ +
T Consensus 294 ~e~A~~~~~-~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 294 MDCVGTAIR-QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL 372 (471)
T ss_pred HHHHHHHHH-cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence 999987663 2235888776554322211 0 01111 134567788999999999998864444332 22 2
Q ss_pred CCC---------cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeC-CceeeccCCCeEEecccCCccccchhH
Q 046865 217 STG---------DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVD-ENLRVKGQKNIFAIGDITDIREIKQGF 285 (369)
Q Consensus 217 ~~g---------~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd-~~l~~~~~~~i~a~GD~~~~~~~~~~~ 285 (369)
.+| +++++|.||+|+|.+|+. .++... ++.++++|++.+| ++++| +.|+|||+|||+..+ ++..
T Consensus 373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~--gl~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~--~~~~ 447 (471)
T PRK12810 373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQF--GVELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQ--SLVV 447 (471)
T ss_pred cCCCccccCCceEEEECCEEEECcCcCCCchhhcccc--CcccCCCCCEEeCCCcccC-CCCCEEEccccCCCc--hhHH
Confidence 222 479999999999999985 455443 3467888999998 78997 799999999999754 3578
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 046865 286 LAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 286 ~A~~~g~~~a~~i~~~~~g~~ 306 (369)
.|+.||+.||.+|...|.|..
T Consensus 448 ~Av~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 448 WAIAEGRQAARAIDAYLMGST 468 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999998753
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=2.7e-30 Score=258.54 Aligned_cols=270 Identities=22% Similarity=0.252 Sum_probs=179.2
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc--cccceecccccc--ccceEEEeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF--GERSVINHTDYL--VNGRIVASPAI 85 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~ 85 (369)
...++|+|||||||||+||+.|+ +|++|+|+|+++.+|...... -+.+ +........+++ .++++..+...
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~----IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~ 610 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI----IPEFRISAESIQKDIELVKFHGVEFKYGCSP 610 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec----ccccCCCHHHHHHHHHHHHhcCcEEEEeccc
Confidence 34689999999999999999997 599999999998776432111 1111 111111111111 14566554211
Q ss_pred eeecceEEecCCeEEeccEEEEccCCCCC----CCCChHH---HHHHHHHHH---HHHhcCCeEEEEcCChhHHHHHHHH
Q 046865 86 NITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTE---RLNQYQAEN---QKIKSARSILIVGGGPTGVELAGEI 155 (369)
Q Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~---~~~~~~~~~---~~~~~~~~v~vvG~G~~g~e~a~~l 155 (369)
.+.+.+.+...||+|+||||+.+. +|+.... .+.-+.... .....+++|+|||||.+|+|+|..+
T Consensus 611 -----d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a 685 (1012)
T TIGR03315 611 -----DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAA 685 (1012)
T ss_pred -----ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHH
Confidence 122223345679999999999843 2332110 111111111 1234689999999999999999887
Q ss_pred hhhCCC-CeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---------------cCC
Q 046865 156 AVDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---------------TST 218 (369)
Q Consensus 156 ~~~~~~-~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---------------~~~ 218 (369)
.+ .++ .+|+++++..+ .++..+ +.+.+.+ +.||+++++..+.+++ ++.+.+. ..+
T Consensus 686 ~R-l~Ga~kVtLVyRr~~~~Mpa~~----eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~ 757 (1012)
T TIGR03315 686 LR-VPGVEKVTVVYRRTKRYMPASR----EELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGT 757 (1012)
T ss_pred HH-hCCCceEEEEEccCccccccCH----HHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecC
Confidence 63 345 58999998763 344333 3334333 5799999988777665 2222211 112
Q ss_pred Cc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCccccchhHHHHHHHHHHH
Q 046865 219 GD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAA 295 (369)
Q Consensus 219 g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a 295 (369)
|+ ++++|.||+|+|..|+++++...++ .++++|++.||++ ++| +.|+|||+|||+..+. +...|+.||+.||
T Consensus 758 Gee~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~--tVv~AIaqGr~AA 832 (1012)
T TIGR03315 758 GETVDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPA--TIVEAIADGRKAA 832 (1012)
T ss_pred CCeEEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCcc--HHHHHHHHHHHHH
Confidence 33 6899999999999999998865444 6788899999986 776 7999999999986543 6789999999999
Q ss_pred HHHHHHh
Q 046865 296 KNLKVLM 302 (369)
Q Consensus 296 ~~i~~~~ 302 (369)
.+|++..
T Consensus 833 ~nIl~~~ 839 (1012)
T TIGR03315 833 NAILSRE 839 (1012)
T ss_pred HHHhccc
Confidence 9998543
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.1e-30 Score=262.22 Aligned_cols=277 Identities=19% Similarity=0.212 Sum_probs=183.7
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN 86 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (369)
...++|+||||||||++||..|+ +|++|+|+|+.+.++.... .+..+ ..+........+++ .++++..+..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---rlp~~~~~~~~~~l~~~gv~~~~~~~v- 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEF---RLPKKIVDVEIENLKKLGVKFETDVIV- 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCC---CCCHHHHHHHHHHHHHCCCEEECCCEE-
Confidence 35689999999999999999986 5999999999776553211 11111 01111111111111 15666554432
Q ss_pred eecceEEecCCeEEeccEEEEccCCC-CCCCCChH---HHH---HHHHHHHH-----------HHhcCCeEEEEcCChhH
Q 046865 87 ITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTRT---ERL---NQYQAENQ-----------KIKSARSILIVGGGPTG 148 (369)
Q Consensus 87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~~~p~~~~---~~~---~~~~~~~~-----------~~~~~~~v~vvG~G~~g 148 (369)
.+.+.+.+.+...||+|+||||+. |..|+++. ..+ .++..... ....+++++|||||++|
T Consensus 505 --~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a 582 (752)
T PRK12778 505 --GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA 582 (752)
T ss_pred --CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence 123334344456799999999994 65444332 111 11211111 11346899999999999
Q ss_pred HHHHHHHhhhCCCCe-EEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc--------
Q 046865 149 VELAGEIAVDFPEKK-VTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT-------- 216 (369)
Q Consensus 149 ~e~a~~l~~~~~~~~-v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-------- 216 (369)
+|+|..+.+ .+.+ |+++++.++ .++. .. .. .+.+++.||++++++.+.++..++ +.+ .+++
T Consensus 583 ~d~A~~~~r--~Ga~~Vtlv~r~~~~~~~~---~~-~e-~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 655 (752)
T PRK12778 583 MDSARTAKR--LGAERVTIVYRRSEEEMPA---RL-EE-VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEP 655 (752)
T ss_pred HHHHHHHHH--cCCCeEEEeeecCcccCCC---CH-HH-HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCc
Confidence 999998873 4665 999998764 2222 21 12 245778899999999888775433 222 1222
Q ss_pred -CCC-----------cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865 217 -STG-----------DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG 284 (369)
Q Consensus 217 -~~g-----------~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~ 284 (369)
.+| .++++|.||+|+|..|+..++... .++.++++|+|.||++++| +.|+|||+|||+..+ .+.
T Consensus 656 ~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~--~~v 731 (752)
T PRK12778 656 DASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGG--ATV 731 (752)
T ss_pred CCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCc--HHH
Confidence 112 269999999999999998765432 2346778899999999987 799999999999754 367
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 046865 285 FLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 285 ~~A~~~g~~~a~~i~~~~~g 304 (369)
..|+.+|+.||.+|.+.|.+
T Consensus 732 v~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 732 ILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999988865
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=2.9e-30 Score=254.26 Aligned_cols=277 Identities=18% Similarity=0.231 Sum_probs=183.2
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI 87 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (369)
..++|+|||||++|+++|..|+ .|++|+|+|+++.++..+.. +..+ ...........+.+ .++++..+.....
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~ 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRF---RLPESVIDADIAPLRAMGAEFRFNTVFGR 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCC---CCCHHHHHHHHHHHHHcCCEEEeCCcccC
Confidence 4579999999999999999987 59999999999876533211 1100 00100000001111 1455554443222
Q ss_pred ecceEEecCCeEEeccEEEEccCCCCC----CCCChHHHHHHHHHHH------HHHhcCCeEEEEcCChhHHHHHHHHhh
Q 046865 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLNQYQAEN------QKIKSARSILIVGGGPTGVELAGEIAV 157 (369)
Q Consensus 88 ~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~~~~~~~~~~------~~~~~~~~v~vvG~G~~g~e~a~~l~~ 157 (369)
+ +...+. ...||++++|||+.+. +|+.+...+.+..... .....+++++|||+|.+|+|+|..+..
T Consensus 269 d---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~ 344 (652)
T PRK12814 269 D---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALR 344 (652)
T ss_pred c---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHH
Confidence 1 111111 2359999999999742 4443222211111111 123467999999999999999998874
Q ss_pred hCCCCeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---cC---------------C
Q 046865 158 DFPEKKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---TS---------------T 218 (369)
Q Consensus 158 ~~~~~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---~~---------------~ 218 (369)
....+|+++++.++ .++..+ ..+.+. .+.||++++++.+.++..+++.+.++ +. +
T Consensus 345 -~Ga~~Vtlv~r~~~~~mpa~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~ 418 (652)
T PRK12814 345 -LGAESVTILYRRTREEMPANR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVE 418 (652)
T ss_pred -cCCCeEEEeeecCcccCCCCH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecC
Confidence 32357999998764 344332 233333 35799999999888776544433221 11 2
Q ss_pred Cc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCccccchhHHHHHHHHHHH
Q 046865 219 GD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAA 295 (369)
Q Consensus 219 g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a 295 (369)
|+ ++++|.||+++|..|+++++...++ .++.+|+|.||++ ++| +.|+|||+||++..+ ++...|+.||+.||
T Consensus 419 g~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~--~~v~~Ai~~G~~AA 493 (652)
T PRK12814 419 GSEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGA--DIAINAVEQGKRAA 493 (652)
T ss_pred CceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCc--hHHHHHHHHHHHHH
Confidence 22 6899999999999999988765544 6777899999975 666 799999999999654 36789999999999
Q ss_pred HHHHHHhhCCC
Q 046865 296 KNLKVLMVGER 306 (369)
Q Consensus 296 ~~i~~~~~g~~ 306 (369)
.+|.+.|.|++
T Consensus 494 ~~I~~~L~g~~ 504 (652)
T PRK12814 494 HAIDLFLNGKP 504 (652)
T ss_pred HHHHHHHcCCC
Confidence 99999998764
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=6.6e-30 Score=258.30 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=184.9
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCccc--ccceecccccc--ccceEEEeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL--VNGRIVASPAI 85 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~ 85 (369)
...++|+|||||||||+||..|+ +|++|+|+|+.+.+|... ... -|.+. ........+.+ .+++|..+..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l---~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL---RYG-IPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE---Ecc-CCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 34689999999999999999986 599999999988766321 111 11111 11111111111 25666655443
Q ss_pred eeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHHH---HHHHHHHH-------------HhcCCeEEEEcCC
Q 046865 86 NITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLN---QYQAENQK-------------IKSARSILIVGGG 145 (369)
Q Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~~---~~~~~~~~-------------~~~~~~v~vvG~G 145 (369)
. +.+.+++.....||+|+||||+. |+ +|+.+...+. ++...... ...+++|+|||||
T Consensus 380 G---~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG 456 (944)
T PRK12779 380 G---KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGG 456 (944)
T ss_pred c---cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCC
Confidence 2 23555555567899999999995 55 4443222111 12111100 1146899999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC--Ce-EEE-----c
Q 046865 146 PTGVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--SD-TYL-----T 216 (369)
Q Consensus 146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~-----~ 216 (369)
.+|+++|..+. +.|.+|+++.+.++ .+| .....+.+ ..+.||++++++.+.++..+++ .+ .+. +
T Consensus 457 ~tA~D~A~ta~--R~Ga~Vtlv~rr~~~~mp----a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l 529 (944)
T PRK12779 457 NTAMDAARTAK--RLGGNVTIVYRRTKSEMP----ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNEL 529 (944)
T ss_pred HHHHHHHHHHH--HcCCEEEEEEecCccccc----ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEe
Confidence 99999999887 35889999998753 222 22233333 3467999999988888764422 11 111 1
Q ss_pred ----C--------CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCcccc
Q 046865 217 ----S--------TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREI 281 (369)
Q Consensus 217 ----~--------~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~ 281 (369)
. +| .++++|.||+|+|..|+..+ .....+++++++|.|.||+. ++| +.|+|||+|||+..+.
T Consensus 530 ~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~- 606 (944)
T PRK12779 530 GEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS- 606 (944)
T ss_pred ccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH-
Confidence 1 22 36999999999999998653 33334456788899999974 777 7999999999997543
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCC
Q 046865 282 KQGFLAQKHAQVAAKNLKVLMVGE 305 (369)
Q Consensus 282 ~~~~~A~~~g~~~a~~i~~~~~g~ 305 (369)
+...|+.+|+.||.+|..++...
T Consensus 607 -~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 607 -TAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999887653
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=2e-28 Score=249.77 Aligned_cols=279 Identities=17% Similarity=0.170 Sum_probs=180.9
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI 87 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (369)
..++|+|||||||||+||..|+ +|++|+|+|+.+..|.... .+..+. ..........+.+ .++++..+.++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~r---l~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFR---LPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccC---CCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 4679999999999999999986 5999999999887653211 111110 0111111111111 1566665544322
Q ss_pred ecceEEecCCe-EEeccEEEEccCCC-CCCCCChH---HHHH---HHHHHHH------------HHhcCCeEEEEcCChh
Q 046865 88 TENEVLTAEGR-RVVYDYLVIATGHK-DPVPKTRT---ERLN---QYQAENQ------------KIKSARSILIVGGGPT 147 (369)
Q Consensus 88 ~~~~v~~~~g~-~~~~d~lviAtG~~-~~~p~~~~---~~~~---~~~~~~~------------~~~~~~~v~vvG~G~~ 147 (369)
+ +...+.. ...||+||||||+. |..++++. ..+. ++..... ....+++|+|||||.+
T Consensus 506 ~---~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 506 T---FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT 582 (1006)
T ss_pred c---cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence 1 2221111 24699999999995 55444332 2221 1211111 1235789999999999
Q ss_pred HHHHHHHHhhhCCCC-eEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC-CCCe-EEEc--------
Q 046865 148 GVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSD-TYLT-------- 216 (369)
Q Consensus 148 g~e~a~~l~~~~~~~-~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~-------- 216 (369)
|+++|..+.. .|. .|+++.+....- ++ .. ..-.+.+++.||++++++.+.++..+ ++.+ .+++
T Consensus 583 A~D~A~~a~r--lGa~~Vtiv~rr~~~e--m~-a~-~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~ 656 (1006)
T PRK12775 583 AMDCLRVAKR--LGAPTVRCVYRRSEAE--AP-AR-IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEP 656 (1006)
T ss_pred HHHHHHHHHH--cCCCEEEEEeecCccc--CC-CC-HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEeccc
Confidence 9999887763 354 688888754321 11 11 11224577889999999988887543 2222 1211
Q ss_pred -C--------CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-----ceeeccCCCeEEecccCCccc
Q 046865 217 -S--------TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-----NLRVKGQKNIFAIGDITDIRE 280 (369)
Q Consensus 217 -~--------~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-----~l~~~~~~~i~a~GD~~~~~~ 280 (369)
. .| .++++|.||+|+|..|++.++... .++.++++|.|.+|+ +++| +.|+|||+||++..+
T Consensus 657 d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~- 733 (1006)
T PRK12775 657 DEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGG- 733 (1006)
T ss_pred CCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCc-
Confidence 1 12 269999999999999998765432 234677889999997 6777 799999999998654
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 281 IKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 281 ~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
.+...|+.+|+.||.+|...+.+..
T Consensus 734 -~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 734 -ATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999997653
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=5.1e-28 Score=230.05 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=175.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceeccccccc--cceEEEeeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYLV--NGRIVASPAINI 87 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (369)
..++|+|||||++|+++|..|+ +|++|+++|+.+.++..... +..+ ...........+++. ++++..+..+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~---~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 216 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF---KLDKAVLSRRREIFTAMGIEFHLNCEVGR 216 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc---cCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence 5689999999999999999986 59999999998876532110 1000 001111111111111 445543332211
Q ss_pred ecceEEecCCeEEeccEEEEccCCCCC----CCCChHHHHHH---HHH-----HHH---------HHhcCCeEEEEcCCh
Q 046865 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLNQ---YQA-----ENQ---------KIKSARSILIVGGGP 146 (369)
Q Consensus 88 ~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~~~~~---~~~-----~~~---------~~~~~~~v~vvG~G~ 146 (369)
.+... +....||.+++|||+.+. +|+.+...+.+ +.. ... .....++++|+|+|.
T Consensus 217 ---~~~~~-~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 292 (467)
T TIGR01318 217 ---DISLD-DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD 292 (467)
T ss_pred ---ccCHH-HHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence 11111 123479999999999853 44433222111 100 000 012458999999999
Q ss_pred hHHHHHHHHhhhCCC-CeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc------
Q 046865 147 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT------ 216 (369)
Q Consensus 147 ~g~e~a~~l~~~~~~-~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------ 216 (369)
+|+|+|..+.. .+ .+||++++.+.. ++..+ ...+.+++.||++++++.+.++..++ +.+ .+++
T Consensus 293 ~a~d~A~~a~~--~Ga~~Vtvv~r~~~~~~~~~~-----~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 365 (467)
T TIGR01318 293 TAMDCVRTAIR--LGAASVTCAYRRDEANMPGSR-----REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG 365 (467)
T ss_pred HHHHHHHHHHH--cCCCeEEEEEecCcccCCCCH-----HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence 99999988763 36 579999987653 33322 22345678899999999988875432 222 1221
Q ss_pred ---CC---------C--cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeC----CceeeccCCCeEEecccCC
Q 046865 217 ---ST---------G--DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVD----ENLRVKGQKNIFAIGDITD 277 (369)
Q Consensus 217 ---~~---------g--~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd----~~l~~~~~~~i~a~GD~~~ 277 (369)
.+ | .++++|.||+++|++|+. .++...+ +.++++|++.|| ++++| +.|+|||+|||+.
T Consensus 366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~g--l~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~ 442 (467)
T TIGR01318 366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHG--ITLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVR 442 (467)
T ss_pred ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccC--ccCCCCCCEEeCCccccCccC-CCCCEEEECCcCC
Confidence 01 2 369999999999999985 4554433 467788999999 67887 7999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHh
Q 046865 278 IREIKQGFLAQKHAQVAAKNLKVLM 302 (369)
Q Consensus 278 ~~~~~~~~~A~~~g~~~a~~i~~~~ 302 (369)
.+. +...|+.+|+.||.||.+.+
T Consensus 443 ~~~--~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 443 GAD--LVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred Ccc--HHHHHHHHHHHHHHHHHHHh
Confidence 543 56899999999999998765
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=6.1e-28 Score=230.33 Aligned_cols=282 Identities=18% Similarity=0.208 Sum_probs=175.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI 87 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (369)
..++|+|||||++|+++|..|+ +|++|+|+|+.+.++.... .+..+ ...........+++ .++++..+..+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~---~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNM---KLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCc---cCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 4579999999999999999986 5999999999887652111 01000 00101111111111 1456655443321
Q ss_pred ecceEEecCCeEEeccEEEEccCCC-CCC---CCChHHHHH---HHHHHH-------------HHHhcCCeEEEEcCChh
Q 046865 88 TENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTRTERLN---QYQAEN-------------QKIKSARSILIVGGGPT 147 (369)
Q Consensus 88 ~~~~v~~~~g~~~~~d~lviAtG~~-~~~---p~~~~~~~~---~~~~~~-------------~~~~~~~~v~vvG~G~~ 147 (369)
+ +.. +.....||.|++|||+. |.. |+.+...+. ++.... ......++++|+|+|++
T Consensus 219 ~---~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 219 D---ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred c---cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 1 111 11235799999999998 543 433221111 111100 00135689999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEEcCccccccCC-----cc------hHHHHHHHHHhCCcEE-EeCceeeeccCCC-CCe-E
Q 046865 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTLDWLISKKVDV-KLGQRVNLDSVSE-GSD-T 213 (369)
Q Consensus 148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~-----~~------~~~~~~~~l~~~gv~i-~~~~~v~~i~~~~-~~~-~ 213 (369)
|+|+|..+.. ....+|+++++.++.+.... +. .....++..+..|+++ ++++.+.++..++ +.+ .
T Consensus 295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~ 373 (485)
T TIGR01317 295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA 373 (485)
T ss_pred HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence 9999776653 34578999998876543211 11 1222333344456654 4566666664332 222 1
Q ss_pred EEc--------CCC-----------cEEeccEEEEcCCCC-CCchhhcccccCCCCCCCCcEEe-CCceeeccCCCeEEe
Q 046865 214 YLT--------STG-----------DTIKADCHFLCTGKP-VGSDWLKDTILKDSLDTDGMLMV-DENLRVKGQKNIFAI 272 (369)
Q Consensus 214 v~~--------~~g-----------~~i~~d~vi~a~G~~-p~~~~l~~~~~~~~~~~~g~i~v-d~~l~~~~~~~i~a~ 272 (369)
+++ ++| .++++|.||+|+|.. |+++++...++ +++++|++.+ |++++| +.|+|||+
T Consensus 374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa 450 (485)
T TIGR01317 374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA 450 (485)
T ss_pred EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence 221 123 279999999999986 88887765544 6677898865 577887 79999999
Q ss_pred cccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 273 GDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 273 GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
|||+..+. +...|+.+|+.||.+|...|.+..
T Consensus 451 GD~~~g~~--~~~~Av~~G~~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 451 GDCRRGQS--LIVWAINEGRKAAAAVDRYLMGSS 482 (485)
T ss_pred eccCCCcH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99986543 678899999999999999998753
No 67
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=8.8e-28 Score=237.66 Aligned_cols=273 Identities=16% Similarity=0.180 Sum_probs=176.6
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc--cccceeccccccc--cceEEEeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF--GERSVINHTDYLV--NGRIVASPAIN 86 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~ 86 (369)
..++|+|||||+|||+||..|+ .|++|+|+|+.+.++..+.. . -+.+ ....+....+++. ++++..+..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~---g-ip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF---G-IPAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee---c-CCCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 4689999999999999999986 59999999998876632211 1 1111 1111111111111 34554333221
Q ss_pred eecceEEecCCeEEeccEEEEccCCCC----CCCCChHHHH-------H-HHHHHH---HH------HhcCCeEEEEcCC
Q 046865 87 ITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERL-------N-QYQAEN---QK------IKSARSILIVGGG 145 (369)
Q Consensus 87 ~~~~~v~~~~g~~~~~d~lviAtG~~~----~~p~~~~~~~-------~-~~~~~~---~~------~~~~~~v~vvG~G 145 (369)
.+ +...+ ....||.+++|||+.. .+|+.....+ . ...... .. ....++++|||+|
T Consensus 402 ~~---i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG 477 (654)
T PRK12769 402 KD---ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG 477 (654)
T ss_pred Cc---CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCc
Confidence 11 11111 1246999999999863 3444321111 0 000000 00 1245799999999
Q ss_pred hhHHHHHHHHhhhCCC-CeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC-CCCe-EEEc-----
Q 046865 146 PTGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSD-TYLT----- 216 (369)
Q Consensus 146 ~~g~e~a~~l~~~~~~-~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~----- 216 (369)
.+|+|+|..+.+ .+ .+|+++++.++. ++.. ....+.+++.||++++++.+.++..+ ++.+ .+++
T Consensus 478 ~~a~d~A~~a~r--~ga~~Vt~i~~~~~~~~~~~-----~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 550 (654)
T PRK12769 478 DTAMDCVRTALR--HGASNVTCAYRRDEANMPGS-----KKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRL 550 (654)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeEecCCCCCCCC-----HHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEe
Confidence 999999987663 35 579999987653 3322 23345678899999999988887533 2322 2221
Q ss_pred ----CCC---------c--EEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeCC----ceeeccCCCeEEecccC
Q 046865 217 ----STG---------D--TIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVDE----NLRVKGQKNIFAIGDIT 276 (369)
Q Consensus 217 ----~~g---------~--~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd~----~l~~~~~~~i~a~GD~~ 276 (369)
.+| + ++++|.||+|+|+.|+. .++... ++.++++|.|.+|+ ++|| +.|+|||+||++
T Consensus 551 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~--gl~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~ 627 (654)
T PRK12769 551 GEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESH--GVTVDKWGRIIADVESQYRYQT-SNPKIFAGGDAV 627 (654)
T ss_pred cCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccccc--CCcCCCCCCEEeCCCcccCccc-CCCCEEEcCCcC
Confidence 122 2 69999999999999985 455443 44778899999986 4787 799999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 277 DIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 277 ~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
..+. +...|+.+|+.||.+|..+|.+
T Consensus 628 ~g~~--~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 628 RGAD--LVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCCc--HHHHHHHHHHHHHHHHHHHhCc
Confidence 6543 6789999999999999988754
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=1.3e-27 Score=235.24 Aligned_cols=279 Identities=18% Similarity=0.192 Sum_probs=174.3
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN 86 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (369)
...++|+|||+|++|+++|..|+ .|++|+|+|+++..+..+. .+... ...........+++ .+++++.+..+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 357 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSY---RLPDEALDKDIAFIEALGVKIHLNTRVG 357 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcc---cCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence 45689999999999999999997 5999999999887653211 01000 01111111111111 145554443321
Q ss_pred eecceEEecCCeEEeccEEEEccCCC-C---CCCCChHHHHHHHHHHHH----H-------HhcCCeEEEEcCChhHHHH
Q 046865 87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQ----K-------IKSARSILIVGGGPTGVEL 151 (369)
Q Consensus 87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~---~~p~~~~~~~~~~~~~~~----~-------~~~~~~v~vvG~G~~g~e~ 151 (369)
.+ +...+ ....||+||+|||+. + .+|+.....+........ . ...+++++|||||++|+|+
T Consensus 358 ~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~ 433 (604)
T PRK13984 358 KD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDI 433 (604)
T ss_pred Cc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHH
Confidence 11 11111 235799999999986 2 344433221111111111 1 1236899999999999999
Q ss_pred HHHHhhhC----CCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc--------C-
Q 046865 152 AGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT--------S- 217 (369)
Q Consensus 152 a~~l~~~~----~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~--------~- 217 (369)
|..+.+.. ...+|+++... +....++... ..+.+ +.+.||++++++.+.++..+++.+ .+++ .
T Consensus 434 A~~l~r~~~~~~g~~~V~v~~~~-r~~~~~~~~~-~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~ 510 (604)
T PRK13984 434 ARSMARLQKMEYGEVNVKVTSLE-RTFEEMPADM-EEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE 510 (604)
T ss_pred HHHHHhccccccCceEEEEeccc-cCcccCCCCH-HHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCC
Confidence 99987421 23478887432 1222222222 22333 346899999998887765433322 1211 1
Q ss_pred ----------CCcEEeccEEEEcCCCCCCchhhcccc-cCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865 218 ----------TGDTIKADCHFLCTGKPVGSDWLKDTI-LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL 286 (369)
Q Consensus 218 ----------~g~~i~~d~vi~a~G~~p~~~~l~~~~-~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~ 286 (369)
+.+++++|.||+|+|++|+++++.... ..+.. ++|+|.||+++|| +.|+|||+||++..+. ...
T Consensus 511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~---~v~ 585 (604)
T PRK13984 511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD---IIH 585 (604)
T ss_pred CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH---HHH
Confidence 123799999999999999998876431 12233 4688999999998 7999999999997653 467
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 046865 287 AQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 287 A~~~g~~~a~~i~~~~~g 304 (369)
|+.+|+.||.+|.+.|.+
T Consensus 586 Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 586 GVADGYWAAEGIDMYLRK 603 (604)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 69
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=218.51 Aligned_cols=281 Identities=24% Similarity=0.345 Sum_probs=205.2
Q ss_pred EEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccccccccccCCcccc-cceecc-c-cccccceEE-Eeeeeeee
Q 046865 16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINH-T-DYLVNGRIV-ASPAINIT 88 (369)
Q Consensus 16 vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~-~~~~~~~~ 88 (369)
++|||+|++|+++|..|+ .+.+++++..++...+....+...+...... ...... . ....++... ...+..+|
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 589999999999999775 3688888888776555444333332221110 001110 0 011234443 34577777
Q ss_pred c--ceEEecCCeEEeccEEEEccCCCCCCCCC-------hHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhC
Q 046865 89 E--NEVLTAEGRRVVYDYLVIATGHKDPVPKT-------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF 159 (369)
Q Consensus 89 ~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~ 159 (369)
+ +.+.+.++ .+.||+|++|||++|..++. ..................++++|+|+|++|+|+|..+.+
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~-- 157 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAK-- 157 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHH--
Confidence 4 47788788 89999999999999887631 111222233333333336899999999999999999985
Q ss_pred CCCeEEEEEcCccccccCC-cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE---EEcCCCcEEeccEEEEcCCCCC
Q 046865 160 PEKKVTLVHKGSRLLEFIG-PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT---YLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 160 ~~~~v~lv~~~~~~l~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.|.+|++++..+++++.+. +++.+.+.+.++++||++++++.+.+++...+... +...++..+++|.+++++|.+|
T Consensus 158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 4899999999999998776 89999999999999999999999999886554332 5667788999999999999999
Q ss_pred CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--------chhHHHHHHHHHHHHHHHH
Q 046865 236 GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--------KQGFLAQKHAQVAAKNLKV 300 (369)
Q Consensus 236 ~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--------~~~~~A~~~g~~~a~~i~~ 300 (369)
|..+......+ ....+|++.||+++++...++||++|||+..+.. ...+.|..++++++.++..
T Consensus 238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 97776665422 3456789999999998338999999999876432 2346788899999999873
No 70
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-27 Score=208.99 Aligned_cols=293 Identities=19% Similarity=0.257 Sum_probs=210.9
Q ss_pred ccccccCCCcceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccccccc----cccCCccc------------c
Q 046865 4 QRQQQSEGKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLR----AMVEPSFG------------E 64 (369)
Q Consensus 4 ~~~~~~~~~~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~~~~~----~~~~~~~~------------~ 64 (369)
+|+.....++.-.+|||+|.+..+++...+ .+.+|.+|..++.+.+....+. .+-++... .
T Consensus 169 ~P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeR 248 (659)
T KOG1346|consen 169 PPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKER 248 (659)
T ss_pred CCccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccc
Confidence 344444456778899999999998888775 3789999988765543221111 11111100 0
Q ss_pred cceecccccc-----------ccceEEEe-eeeeeec--ceEEecCCeEEeccEEEEccCCCCCCCC-Ch----------
Q 046865 65 RSVINHTDYL-----------VNGRIVAS-PAINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPK-TR---------- 119 (369)
Q Consensus 65 ~~~~~~~~~~-----------~~~~~~~~-~~~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~-~~---------- 119 (369)
..+..-..|| .++-+.++ .++.+|. +.|.+.||.+|.||.++||||.+|.-.. ++
T Consensus 249 siffepd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~ki 328 (659)
T KOG1346|consen 249 SIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKI 328 (659)
T ss_pred eeEecCCcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhhe
Confidence 0111111111 13444444 4556664 4789999999999999999999986432 11
Q ss_pred --HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCC--CCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCc
Q 046865 120 --TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFP--EKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~--~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv 194 (369)
.....+|..+.......++|.|||+|+.|.|+|..|.+.+. +.+|+-+......+. -++.-+++...+.+++.||
T Consensus 329 t~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV 408 (659)
T KOG1346|consen 329 TYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGV 408 (659)
T ss_pred eEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCc
Confidence 11224455555555566899999999999999999987554 567776655443332 3455788888899999999
Q ss_pred EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCC-CCcEEeCCceeeccCCCeEEec
Q 046865 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT-DGMLMVDENLRVKGQKNIFAIG 273 (369)
Q Consensus 195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~-~g~i~vd~~l~~~~~~~i~a~G 273 (369)
.++.|..|..+......+.+.++||.++..|.|++|+|-.||+++....++. .|+ -|.+.||..|+. ..|||++|
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe--iD~~lGGfrvnaeL~a--r~NvwvAG 484 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE--IDEKLGGFRVNAELKA--RENVWVAG 484 (659)
T ss_pred eeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccce--eecccCcEEeeheeec--ccceeeec
Confidence 9999999999988878888999999999999999999999999999988884 444 378999999997 69999999
Q ss_pred ccCCccccchh-------HHHHHHHHHHHHHHHH
Q 046865 274 DITDIREIKQG-------FLAQKHAQVAAKNLKV 300 (369)
Q Consensus 274 D~~~~~~~~~~-------~~A~~~g~~~a~~i~~ 300 (369)
|++.+..+.++ -+|+-.||.|++||..
T Consensus 485 daacF~D~~LGrRRVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 485 DAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred chhhhhcccccceeccccccceeeceeccccccc
Confidence 99987655443 2677889999999973
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=1.9e-26 Score=227.29 Aligned_cols=275 Identities=17% Similarity=0.205 Sum_probs=176.7
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCC-cccccceecccccc--ccceEEEeeeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGERSVINHTDYL--VNGRIVASPAINI 87 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (369)
..++|+|||||++||++|..|+ .|++|+++|+++.++..+. ..+.+ .+.........+++ .++++..+.....
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT---FGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee---ccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC
Confidence 4789999999999999999986 5999999999987663211 11110 01111111111111 1455544332211
Q ss_pred ecceEEecCCeEEeccEEEEccCCCC----CCCCChHHHHH---HHH-----HHH---H------HHhcCCeEEEEcCCh
Q 046865 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLN---QYQ-----AEN---Q------KIKSARSILIVGGGP 146 (369)
Q Consensus 88 ~~~~v~~~~g~~~~~d~lviAtG~~~----~~p~~~~~~~~---~~~-----~~~---~------~~~~~~~v~vvG~G~ 146 (369)
.+...+ ....||.+++|||+.+ .+|+.+...+. ++. ... . .....++++|+|+|.
T Consensus 386 ---~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~ 461 (639)
T PRK12809 386 ---DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD 461 (639)
T ss_pred ---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence 111111 2357999999999973 24443221111 011 000 0 012468999999999
Q ss_pred hHHHHHHHHhhhCCC-CeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEc---C--
Q 046865 147 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLT---S-- 217 (369)
Q Consensus 147 ~g~e~a~~l~~~~~~-~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~---~-- 217 (369)
++++.|..+.. .| .+|+++++.++. ++..+ ..+ ..+++.||++++++.+.++..++ +.+. +.+ .
T Consensus 462 ~a~d~a~~~~~--~Ga~~Vt~v~rr~~~~~~~~~----~e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 534 (639)
T PRK12809 462 TTMDCLRTSIR--LNAASVTCAYRRDEVSMPGSR----KEV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG 534 (639)
T ss_pred HHHHHHHHHHH--cCCCeEEEeeecCcccCCCCH----HHH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence 99999987653 35 589999987654 33222 222 23577899999999988886432 2221 211 1
Q ss_pred ----CC-----------cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeCC----ceeeccCCCeEEecccCC
Q 046865 218 ----TG-----------DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVDE----NLRVKGQKNIFAIGDITD 277 (369)
Q Consensus 218 ----~g-----------~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd~----~l~~~~~~~i~a~GD~~~ 277 (369)
+| .++++|.||+|+|+.|+. .++.. +++.++++|+|.+|+ ++|| +.|+|||+||++.
T Consensus 535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~--~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~ 611 (639)
T PRK12809 535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG--SGIKLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH 611 (639)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccc--cCcccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence 12 268999999999999874 44444 344678889999986 3787 7999999999996
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865 278 IREIKQGFLAQKHAQVAAKNLKVLMVGE 305 (369)
Q Consensus 278 ~~~~~~~~~A~~~g~~~a~~i~~~~~g~ 305 (369)
.+. +...|+.+|+.||.+|...|.+.
T Consensus 612 g~~--~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 612 GAD--LVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred Cch--HHHHHHHHHHHHHHHHHHHHhhh
Confidence 543 67899999999999999888653
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=8.9e-26 Score=231.65 Aligned_cols=273 Identities=13% Similarity=0.075 Sum_probs=177.1
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccce-eccccc---cccceEEE-eeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSV-INHTDY---LVNGRIVA-SPAI 85 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~-~~~~ 85 (369)
..+||+|||||||||+||..|+ .|++|+|||+++.++..+........ ......+ ....+. +.++++.. .++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETID-GKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccC-CccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 4689999999999999999986 59999999998877643321110010 0000000 011111 12344443 2333
Q ss_pred eeecc-eE------E----------e-cCCeEEeccEEEEccCCCCCCCCCh---HHHHHH---HHHHHH--HHhcCCeE
Q 046865 86 NITEN-EV------L----------T-AEGRRVVYDYLVIATGHKDPVPKTR---TERLNQ---YQAENQ--KIKSARSI 139 (369)
Q Consensus 86 ~~~~~-~v------~----------~-~~g~~~~~d~lviAtG~~~~~p~~~---~~~~~~---~~~~~~--~~~~~~~v 139 (369)
.+... .+ . . +...++.||+||||||+.+..|+++ ...+.. ...... ....++++
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~V 320 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRI 320 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeE
Confidence 33221 00 0 0 0112689999999999996655432 222111 111111 12357899
Q ss_pred EEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC-
Q 046865 140 LIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS- 217 (369)
Q Consensus 140 ~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~- 217 (369)
+|+|+|++++|+|..|.+ .+ ..|+++++.+.+ ...+.+.+++.||++++++.+.++..++....+++.
T Consensus 321 vViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~ 390 (985)
T TIGR01372 321 VVATNNDSAYRAAADLLA--AGIAVVAIIDARADV--------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR 390 (985)
T ss_pred EEECCCHHHHHHHHHHHH--cCCceEEEEccCcch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe
Confidence 999999999999999985 36 467888776533 345677889999999999999988754432233332
Q ss_pred ---CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCC--CcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865 218 ---TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTD--GMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQ 292 (369)
Q Consensus 218 ---~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~--g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~ 292 (369)
+++++++|.|+++.|.+||++++...+..+..++. +++. .++.|+||++||+++.. ....|..+|+
T Consensus 391 ~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~---~~~~A~~eG~ 461 (985)
T TIGR01372 391 NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLF---GLAAALADGA 461 (985)
T ss_pred cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCcc---CHHHHHHHHH
Confidence 45689999999999999999988766554333332 2221 23689999999999765 3567999999
Q ss_pred HHHHHHHHHhhC
Q 046865 293 VAAKNLKVLMVG 304 (369)
Q Consensus 293 ~~a~~i~~~~~g 304 (369)
.||..|+..+..
T Consensus 462 ~Aa~~i~~~lg~ 473 (985)
T TIGR01372 462 AAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHcCC
Confidence 999999877643
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=2.3e-25 Score=217.22 Aligned_cols=277 Identities=20% Similarity=0.251 Sum_probs=176.9
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN 86 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (369)
...++|+|||+||+||++|..|+ .|++|+++|+.+.++..+.. +..+ .+.........+.+ .++++..+....
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAY---RLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCc---cCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 44679999999999999999986 59999999998877642210 1000 00100000001111 134443332211
Q ss_pred eecceEEecCCeEEeccEEEEccCCCCC----CCCChHHHHH---HHHHH---HHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865 87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLN---QYQAE---NQKIKSARSILIVGGGPTGVELAGEIA 156 (369)
Q Consensus 87 ~~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~~~~---~~~~~---~~~~~~~~~v~vvG~G~~g~e~a~~l~ 156 (369)
.+. .. +.....||++++|||+... +|+....... .+... .......++++|+|+|.++++.+..+.
T Consensus 212 ~~~---~~-~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~ 287 (564)
T PRK12771 212 EDI---TL-EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTAR 287 (564)
T ss_pred CcC---CH-HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHH
Confidence 110 00 0012358999999998743 3332211111 11110 011234789999999999999998665
Q ss_pred hhCCCCeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe------EEEc----CC-------
Q 046865 157 VDFPEKKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD------TYLT----ST------- 218 (369)
Q Consensus 157 ~~~~~~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~------~v~~----~~------- 218 (369)
+ ....+|+++.+.+.. ++. ....+. .+.+.||++++++.+.++..+++.. .+.. .+
T Consensus 288 ~-lga~~v~ii~r~~~~~~~~----~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~ 361 (564)
T PRK12771 288 R-LGAEEVTIVYRRTREDMPA----HDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVT 361 (564)
T ss_pred H-cCCCEEEEEEecCcccCCC----CHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecC
Confidence 3 334789999887642 222 222333 3456899999999998886543321 1221 12
Q ss_pred C--cEEeccEEEEcCCCCCCchhhcc-cccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccchhHHHHHHHHHH
Q 046865 219 G--DTIKADCHFLCTGKPVGSDWLKD-TILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVA 294 (369)
Q Consensus 219 g--~~i~~d~vi~a~G~~p~~~~l~~-~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~ 294 (369)
| .++++|.||+|+|..|+++++.. .++ . +++|+|.||+ +++| +.|+|||+||++..+ ++...|+.+|+.+
T Consensus 362 g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~--~~v~~Av~~G~~a 435 (564)
T PRK12771 362 GEEETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGP--RTVTTAIGHGKKA 435 (564)
T ss_pred CceEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCc--hHHHHHHHHHHHH
Confidence 2 37999999999999999888764 333 4 6789999998 5665 899999999998654 4778999999999
Q ss_pred HHHHHHHhhCCC
Q 046865 295 AKNLKVLMVGER 306 (369)
Q Consensus 295 a~~i~~~~~g~~ 306 (369)
|.+|.+.+.|..
T Consensus 436 A~~i~~~L~g~~ 447 (564)
T PRK12771 436 ARNIDAFLGGEP 447 (564)
T ss_pred HHHHHHHHcCCC
Confidence 999999998754
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=1.2e-24 Score=204.87 Aligned_cols=286 Identities=14% Similarity=0.106 Sum_probs=173.7
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccccccccccCCcccc-cc-eecccccc--ccceEEE
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RS-VINHTDYL--VNGRIVA 81 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~~ 81 (369)
+....++|+|||||||||+||..|. +|++|+|+|+.+..+. .++..+.+.... .. ...+..++ .+++|+.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEc
Confidence 3445689999999999999999885 4999999999987653 333223232221 10 11111111 2345443
Q ss_pred eeeeeeecceEEecCCeEEeccEEEEccCCCC----CCCCChHHHH---HHHH----------HHHHHHhcCCeEEEEcC
Q 046865 82 SPAINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERL---NQYQ----------AENQKIKSARSILIVGG 144 (369)
Q Consensus 82 ~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~----~~p~~~~~~~---~~~~----------~~~~~~~~~~~v~vvG~ 144 (369)
+..+ . +.+.+++. ...||++|+|||+.+ .+|+.+...+ .++. .........++++|||+
T Consensus 99 nv~v--g-~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGg 174 (491)
T PLN02852 99 NVTL--G-RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQ 174 (491)
T ss_pred CEEE--C-ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECC
Confidence 3222 1 12333332 347999999999974 2454321111 1111 11111235789999999
Q ss_pred ChhHHHHHHHHhhh------------------C-CCCeEEEEEcCccccc-cCCcc------------------------
Q 046865 145 GPTGVELAGEIAVD------------------F-PEKKVTLVHKGSRLLE-FIGPK------------------------ 180 (369)
Q Consensus 145 G~~g~e~a~~l~~~------------------~-~~~~v~lv~~~~~~l~-~~~~~------------------------ 180 (369)
|++|+|+|..|.+. . .-.+|+++.|....-. ...++
T Consensus 175 GnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~ 254 (491)
T PLN02852 175 GNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPE 254 (491)
T ss_pred CHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccc
Confidence 99999999987631 1 2357999998763210 00011
Q ss_pred -------------hHHHHHHHHHh---------CCcEEEeCceeeeccC--CC-CCe-EEEcC-----------------
Q 046865 181 -------------AGDKTLDWLIS---------KKVDVKLGQRVNLDSV--SE-GSD-TYLTS----------------- 217 (369)
Q Consensus 181 -------------~~~~~~~~l~~---------~gv~i~~~~~v~~i~~--~~-~~~-~v~~~----------------- 217 (369)
..+.+.+...+ ++|.+++.....++.. ++ +.+ .+++.
T Consensus 255 ~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~ 334 (491)
T PLN02852 255 DEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVG 334 (491)
T ss_pred hhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCC
Confidence 11222222222 5788888877777752 11 211 12110
Q ss_pred CCc--EEeccEEEEcCCCC--CCchh-hcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865 218 TGD--TIKADCHFLCTGKP--VGSDW-LKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQ 292 (369)
Q Consensus 218 ~g~--~i~~d~vi~a~G~~--p~~~~-l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~ 292 (369)
+|+ ++++|.||.+.|++ |...+ +... .++..+.+|+|.+|+.++| +.|+|||+|||...|.- ....++.+|+
T Consensus 335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~-~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~g-vI~t~~~dA~ 411 (491)
T PLN02852 335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFDHK-RGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPTG-IIGTNLTCAE 411 (491)
T ss_pred CCCEEEEECCEEEEeecCCCCCCCCCccccC-cCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCCC-eeeecHhhHH
Confidence 232 68999999999998 55543 2221 1234577899999988887 79999999999976532 3457889999
Q ss_pred HHHHHHHHHhhC
Q 046865 293 VAAKNLKVLMVG 304 (369)
Q Consensus 293 ~~a~~i~~~~~g 304 (369)
.++.+|...+..
T Consensus 412 ~ta~~i~~d~~~ 423 (491)
T PLN02852 412 ETVASIAEDLEQ 423 (491)
T ss_pred HHHHHHHHHHHc
Confidence 999999988754
No 75
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-24 Score=172.99 Aligned_cols=278 Identities=19% Similarity=0.258 Sum_probs=189.6
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc-ccccccc----CCcccccc----eec-ccc--ccccceE
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMV----EPSFGERS----VIN-HTD--YLVNGRI 79 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~-~~~~~~~----~~~~~~~~----~~~-~~~--~~~~~~~ 79 (369)
+.+|+|||+|||+.+||++++ ...+-+|+|-.-.-+..+ ..+.... -|.|++-. +.+ .++ ..-+.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 459999999999999998876 488999999543222211 1111100 12222111 110 010 0115677
Q ss_pred EEeeeeeeecc----eEEecCCeEEeccEEEEccCCCC---CCCCC-hHHH----HHHHHHH--HHHHhcCCeEEEEcCC
Q 046865 80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHKD---PVPKT-RTER----LNQYQAE--NQKIKSARSILIVGGG 145 (369)
Q Consensus 80 ~~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~---~~p~~-~~~~----~~~~~~~--~~~~~~~~~v~vvG~G 145 (369)
+..++..+|.. .+.+ +.+.+.+|.+|+|||+.. .+|+. +... +..+.-. ...+...+..+|||||
T Consensus 88 ~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG 166 (322)
T KOG0404|consen 88 ITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG 166 (322)
T ss_pred eeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence 77777777643 4444 567899999999999984 36664 2211 1112111 2234677899999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCC---CeEEE-cCCC-
Q 046865 146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG---SDTYL-TSTG- 219 (369)
Q Consensus 146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~~~v~-~~~g- 219 (369)
.+++|-|.+|.+. +++|++++|.+.+ +.+..++++.++ .+|++++|+.+.+...+.+ .+.+. +..|
T Consensus 167 DsA~EEA~fLtky--askVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge 238 (322)
T KOG0404|consen 167 DSAMEEALFLTKY--ASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE 238 (322)
T ss_pred HHHHHHHHHHHhh--ccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCc
Confidence 9999999999853 8999999999877 667777776654 5899999998876654432 23332 2233
Q ss_pred -cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHH
Q 046865 220 -DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298 (369)
Q Consensus 220 -~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i 298 (369)
..++.+-++++.|..|++.+++. .+++|++|+|.+-+.-..++.|++||+||+.+... .++..|.-.|.++|-..
T Consensus 239 ~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ky-RQAvTaAgsGciaaldA 314 (322)
T KOG0404|consen 239 ETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKY-RQAVTAAGSGCIAALDA 314 (322)
T ss_pred ccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHHH-HHHHhhhccchhhhhhH
Confidence 47999999999999999999986 34789999999986544458999999999998643 46667777777777666
Q ss_pred HHHhh
Q 046865 299 KVLMV 303 (369)
Q Consensus 299 ~~~~~ 303 (369)
-++|.
T Consensus 315 e~yL~ 319 (322)
T KOG0404|consen 315 ERYLT 319 (322)
T ss_pred HHHhh
Confidence 55543
No 76
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.92 E-value=4.7e-24 Score=181.74 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=191.2
Q ss_pred CCcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccc--ccceeccccc-cccceEEEeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDY-LVNGRIVASPA 84 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 84 (369)
..+++|+|||||.+|+++|..+.+ .-+|.+||+.+++.+.+... ++..... ........+. .++..|++..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfT--LvGgGl~~l~~srr~~a~liP~~a~wi~ekv 114 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFT--LVGGGLKSLDSSRRKQASLIPKGATWIKEKV 114 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceE--EeccchhhhhhccCcccccccCCcHHHHHHH
Confidence 468999999999999999988753 35899999988776543221 1111000 0111111222 23567777778
Q ss_pred eeeec--ceEEecCCeEEeccEEEEccCCCCC---CCCCh-------------HHHHHHHHHHHHHHhcCCeEEEEcCCh
Q 046865 85 INITE--NEVLTAEGRRVVYDYLVIATGHKDP---VPKTR-------------TERLNQYQAENQKIKSARSILIVGGGP 146 (369)
Q Consensus 85 ~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~---~p~~~-------------~~~~~~~~~~~~~~~~~~~v~vvG~G~ 146 (369)
..+++ ++|.+.+|++|.|||+|||+|..-+ +++.. ...++.........+.+..+.-.-.++
T Consensus 115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp 194 (446)
T KOG3851|consen 115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP 194 (446)
T ss_pred HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence 77765 4899999999999999999998732 33321 122333333334444444443333333
Q ss_pred h--------HHHHHHH-HhhhCCCCeEEEEE--cCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865 147 T--------GVELAGE-IAVDFPEKKVTLVH--KGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL 215 (369)
Q Consensus 147 ~--------g~e~a~~-l~~~~~~~~v~lv~--~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~ 215 (369)
+ .+-++.. ++++-...++.++. .-+.+.. -+...+++++..++++|++.......+++.++..-..+
T Consensus 195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe 272 (446)
T KOG3851|consen 195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE 272 (446)
T ss_pred cccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH
Confidence 2 2333322 33221123444444 3333332 24678899999999999999988888887655432222
Q ss_pred -cCC-C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccchhHHHHHH
Q 046865 216 -TST-G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQGFLAQKH 290 (369)
Q Consensus 216 -~~~-g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~ 290 (369)
+.+ | ++++++++-+....++ ++.+..+.+ .|+.||+.||. .+|++.+||||++|||.+.|..|++..+..|
T Consensus 273 ~L~kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq 348 (446)
T KOG3851|consen 273 NLDKPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQ 348 (446)
T ss_pred hcCCCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhc
Confidence 222 4 4789999999887775 566666553 67899999995 6999999999999999999999888888899
Q ss_pred HHHHHHHHHHHhhCCCc
Q 046865 291 AQVAAKNLKVLMVGERE 307 (369)
Q Consensus 291 g~~~a~~i~~~~~g~~~ 307 (369)
..++-+|+...++|+.+
T Consensus 349 ~~vv~~nl~~~m~g~~p 365 (446)
T KOG3851|consen 349 SPVVDKNLTQVMQGKRP 365 (446)
T ss_pred CchhhhhHHHHhcCCCc
Confidence 99999999999988653
No 77
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.5e-25 Score=188.04 Aligned_cols=276 Identities=21% Similarity=0.238 Sum_probs=181.9
Q ss_pred CCCcceEEEECCChHHHHHHHHc-ccCCcEEEEcCCCCcccccc---ccccccCCcccc-cc----eeccccccccceEE
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWA---SLRAMVEPSFGE-RS----VINHTDYLVNGRIV 80 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l-~~g~~V~lie~~~~~~~~~~---~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~ 80 (369)
....|||+||||||||.+||.+. ++|.+.-|+-. .||.... .+..++...... .. +..+.+.+ .+++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y-~vDim 284 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY-DVDVM 284 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhc-Cchhh
Confidence 34579999999999999999765 56877666542 3443221 111111111000 00 00000000 11111
Q ss_pred E-eeeeeee-------cceEEecCCeEEeccEEEEccCCCCC---CCCChHH---HHHHHHHHHHHHhcCCeEEEEcCCh
Q 046865 81 A-SPAINIT-------ENEVLTAEGRRVVYDYLVIATGHKDP---VPKTRTE---RLNQYQAENQKIKSARSILIVGGGP 146 (369)
Q Consensus 81 ~-~~~~~~~-------~~~v~~~~g~~~~~d~lviAtG~~~~---~p~~~~~---~~~~~~~~~~~~~~~~~v~vvG~G~ 146 (369)
. .++..+. ...|.+.+|..+..+.+|++||++++ +|+.+.. .+..+......+...+++.|||||.
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGN 364 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGN 364 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence 1 1111221 12688889999999999999999954 6664211 1111222234457789999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCe-EEEc---CCCc-
Q 046865 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSD-TYLT---STGD- 220 (369)
Q Consensus 147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~- 220 (369)
+|+|.|..|+- .-..||+++-.+.+ +.-+.+++.++.. +|+|++|..-+++..+++.+ .+.. .+|+
T Consensus 365 SGvEAAIDLAG--iv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 365 SGVEAAIDLAG--IVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred chHHHHHhHHh--hhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence 99999999972 35689999765544 4456677777664 89999999999988764432 2222 2343
Q ss_pred -EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865 221 -TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK 299 (369)
Q Consensus 221 -~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~ 299 (369)
.+.-+-|++-.|..||++||+.. ++++++|.|.||....| +.|+|||+|||...+. |+...|+-+|..|+-...
T Consensus 437 ~~l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~y-KQIIIamG~GA~AaL~AF 511 (520)
T COG3634 437 HHLELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGET-NVPGVFAAGDCTTVPY-KQIIIAMGEGAKASLSAF 511 (520)
T ss_pred eEEEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCc-CCCceeecCcccCCcc-ceEEEEecCcchhhhhhh
Confidence 56778899999999999999876 37899999999999998 7999999999998764 455566666666665554
Q ss_pred HH
Q 046865 300 VL 301 (369)
Q Consensus 300 ~~ 301 (369)
.+
T Consensus 512 Dy 513 (520)
T COG3634 512 DY 513 (520)
T ss_pred hh
Confidence 43
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.90 E-value=4.2e-23 Score=195.03 Aligned_cols=269 Identities=16% Similarity=0.204 Sum_probs=162.4
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc------------------c-------------
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------V------------- 58 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~------------------~------------- 58 (369)
...++|+|||||++||+||++|. .|.+|+++|+++.+|..|..-... .
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 34689999999999999999986 599999999999888666321000 0
Q ss_pred CCcccc-----------cceeccc---ccc----c--cce---EEEeeeeeeecc----eEEecCC----eEEeccEEEE
Q 046865 59 EPSFGE-----------RSVINHT---DYL----V--NGR---IVASPAINITEN----EVLTAEG----RRVVYDYLVI 107 (369)
Q Consensus 59 ~~~~~~-----------~~~~~~~---~~~----~--~~~---~~~~~~~~~~~~----~v~~~~g----~~~~~d~lvi 107 (369)
-.+++. ..+.... +++ . ++. .+..+|+.++.. .|.+.++ .+..||+||+
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence 000100 0000000 111 0 122 134556666532 3444322 2467999999
Q ss_pred ccC--CCCCCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCc
Q 046865 108 ATG--HKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP 179 (369)
Q Consensus 108 AtG--~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~ 179 (369)
||| +.|.+|.++.. .++............++|+|||+|.+|+|+|.+|... +++|++++|......
T Consensus 168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~--a~~V~l~~r~~~~~~---- 241 (461)
T PLN02172 168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKV--AKEVHIASRASESDT---- 241 (461)
T ss_pred eccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHh--CCeEEEEEeeccccc----
Confidence 999 56776665321 1111111112234679999999999999999999853 789999998764311
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcE-EeC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGML-MVD 258 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i-~vd 258 (369)
.+.+......+..+..|..+..+ + .|++.||+++++|.||+|||++|+.+||...+. +..+++ .+ ..-
T Consensus 242 ------~~~~~~~~~~v~~~~~I~~~~~~-g--~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~-~v~~Ly 310 (461)
T PLN02172 242 ------YEKLPVPQNNLWMHSEIDTAHED-G--SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDEN-RVEPLY 310 (461)
T ss_pred ------cccCcCCCCceEECCcccceecC-C--eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCC-cchhhH
Confidence 01111223445566666654322 2 477889999999999999999999998764321 112221 11 111
Q ss_pred Cceeecc-CCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865 259 ENLRVKG-QKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK 299 (369)
Q Consensus 259 ~~l~~~~-~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~ 299 (369)
+++-... .|+++.+|=..... ....+..|++.+|+-+.
T Consensus 311 ~~~f~~~~~p~LafiG~~~~~~---~f~~~E~Qa~~~a~v~s 349 (461)
T PLN02172 311 KHVFPPALAPGLSFIGLPAMGI---QFVMFEIQSKWVAAVLS 349 (461)
T ss_pred HhhcCCCCCCcEEEEecccccc---CchhHHHHHHHHHHHHc
Confidence 1211222 48999999653222 23577889999888776
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.81 E-value=9.9e-19 Score=172.95 Aligned_cols=266 Identities=14% Similarity=0.099 Sum_probs=148.5
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc---------cccccc------------ccCCccc----c
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT---------WASLRA------------MVEPSFG----E 64 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~---------~~~~~~------------~~~~~~~----~ 64 (369)
...++|+|||||||||+||+.|+ +|++|+++|+.+..+.+ |..+.. ...-.++ .
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k 460 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDK 460 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchH
Confidence 45789999999999999999996 69999999986432211 111000 0000011 0
Q ss_pred cceecccccc---ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCC-CCCCC---CChHHHHHHHHHHHHH-----
Q 046865 65 RSVINHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-KDPVP---KTRTERLNQYQAENQK----- 132 (369)
Q Consensus 65 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~p---~~~~~~~~~~~~~~~~----- 132 (369)
.........+ .++++..+.....+ +..++-....||+++||||+ .|..+ +.+...+.+..+....
T Consensus 461 ~~l~~i~~il~~g~~v~~~~gv~lG~d---it~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~ 537 (1028)
T PRK06567 461 NNLDILRLILERNNNFKYYDGVALDFN---ITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGG 537 (1028)
T ss_pred HHHHHHHHHHhcCCceEEECCeEECcc---CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhcc
Confidence 0000000000 12333333222111 12222134679999999999 45544 4332222111111111
Q ss_pred ---------HhcCCeEEEEcCChhHHHHHHHHhhh---------------------------------------------
Q 046865 133 ---------IKSARSILIVGGGPTGVELAGEIAVD--------------------------------------------- 158 (369)
Q Consensus 133 ---------~~~~~~v~vvG~G~~g~e~a~~l~~~--------------------------------------------- 158 (369)
....++++|||||.+|+|+|......
T Consensus 538 ~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~ 617 (1028)
T PRK06567 538 AFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELR 617 (1028)
T ss_pred cccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhh
Confidence 11357899999999999999832210
Q ss_pred ---CCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEc---------------C-
Q 046865 159 ---FPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLT---------------S- 217 (369)
Q Consensus 159 ---~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~---------------~- 217 (369)
.....|+++.|..+--....+...+.+.+ ..+.||+++.+....++..++ +.++ +++ .
T Consensus 618 ~l~~~~G~VtIvYRr~~~empA~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~ 696 (1028)
T PRK06567 618 KVFNKLGGATVYYRGRLQDSPAYKLNHEELIY-ALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSH 696 (1028)
T ss_pred hhhccCCceEEEecCChhhCCCCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccccccccccccc
Confidence 00112888888764322111112344444 445799999998888776543 2211 111 1
Q ss_pred --------------CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865 218 --------------TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ 283 (369)
Q Consensus 218 --------------~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~ 283 (369)
...+++||.||+|+|..||+.+.. . +..+-. +.+++|+- +
T Consensus 697 ~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~---------~------~~s~~~-d~~~~f~G----------t 750 (1028)
T PRK06567 697 EFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE---------D------KYSYFG-DCNPKYSG----------S 750 (1028)
T ss_pred ccccCCcCcccCCCccccccCCEEEEecccCCcccccc---------c------cccccc-CCCCcccc----------H
Confidence 113689999999999999886520 0 001111 35556654 4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCC
Q 046865 284 GFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 284 ~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
...|+.+|+.++.+|.+.+...+
T Consensus 751 vv~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 751 VVKALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred HHHHHHHHHhHHHHHHHHHhhCC
Confidence 67899999999999988876543
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.81 E-value=8e-19 Score=168.13 Aligned_cols=273 Identities=23% Similarity=0.330 Sum_probs=134.8
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc-----------ccc---------CCccc--c--cce
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-----------AMV---------EPSFG--E--RSV 67 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~-----------~~~---------~~~~~--~--~~~ 67 (369)
+++|+|||||++||++|+.|. .|++++++|+++.+|+.|..-. ... -.+++ . ..+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 368999999999999999875 6999999999999998774210 000 00111 0 001
Q ss_pred eccc---ccc----------ccceEEEeeeeeeec--------c-eEEec-CC--eEEeccEEEEccCCC--CCCC----
Q 046865 68 INHT---DYL----------VNGRIVASPAINITE--------N-EVLTA-EG--RRVVYDYLVIATGHK--DPVP---- 116 (369)
Q Consensus 68 ~~~~---~~~----------~~~~~~~~~~~~~~~--------~-~v~~~-~g--~~~~~d~lviAtG~~--~~~p---- 116 (369)
.... +++ ..++ ...+|+.+.. + .|.+. +| ++..||+|++|||.. |.+|
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 1100 010 1111 1233333321 1 34443 33 345799999999975 5555
Q ss_pred -CChH---HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-cccC--------------
Q 046865 117 -KTRT---ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-LEFI-------------- 177 (369)
Q Consensus 117 -~~~~---~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-l~~~-------------- 177 (369)
+++. ..+++...........|+|+|||+|.+|+++|.+++. ...+|++..|+... +|..
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R 237 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTR 237 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-----------------------
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEeccccccccccccccccccccccc
Confidence 3211 1111111112334678999999999999999999985 37788888886432 1111
Q ss_pred ---------CcchHHHHH-HHHHh------CCc--------------------------EEEeCceeeeccCCCCCeEEE
Q 046865 178 ---------GPKAGDKTL-DWLIS------KKV--------------------------DVKLGQRVNLDSVSEGSDTYL 215 (369)
Q Consensus 178 ---------~~~~~~~~~-~~l~~------~gv--------------------------~i~~~~~v~~i~~~~~~~~v~ 215 (369)
+..+.+.+. +.+.+ .|. ++. ..|.++. +..+.
T Consensus 238 ~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~----~~~v~ 311 (531)
T PF00743_consen 238 FSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFT----ENSVI 311 (531)
T ss_dssp -------------------------------------------------------------E--E-EEEE-----SSEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc----ccccc
Confidence 011111110 11100 011 111 1111221 12467
Q ss_pred cCCCcEE-eccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeec--cCCCeEEecccCCccccchhHHHHHHHH
Q 046865 216 TSTGDTI-KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVK--GQKNIFAIGDITDIREIKQGFLAQKHAQ 292 (369)
Q Consensus 216 ~~~g~~i-~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~--~~~~i~a~GD~~~~~~~~~~~~A~~~g~ 292 (369)
+.||+++ ++|.||+|||++.+.+||+...+. . .++.+..-.++-.. .+|++..+|=+..... ....+..||+
T Consensus 312 F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~--~-~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~--~fp~~ElQAr 386 (531)
T PF00743_consen 312 FEDGSTEEDVDVIIFCTGYKFSFPFLDESLIK--V-DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGS--IFPIFELQAR 386 (531)
T ss_dssp ETTSEEEEE-SEEEE---EE---TTB-TTTT---S--SSSSSEETTTEETETTSTTEEESS-SBSSS---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc--c-cccccccccccccccccccccccccccccccc--cccccccccc
Confidence 8899765 699999999999999999876542 2 22333333443322 3589999997642211 2346788888
Q ss_pred HHHHHHH
Q 046865 293 VAAKNLK 299 (369)
Q Consensus 293 ~~a~~i~ 299 (369)
.+|+-+.
T Consensus 387 w~a~v~s 393 (531)
T PF00743_consen 387 WAARVFS 393 (531)
T ss_dssp HHHHHHT
T ss_pred ccccccc
Confidence 8887765
No 81
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=150.83 Aligned_cols=253 Identities=22% Similarity=0.329 Sum_probs=155.1
Q ss_pred eEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccc--cccccccccCCccc--ccceeccccccccceEEEeeeeee
Q 046865 15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEI--TWASLRAMVEPSFG--ERSVINHTDYLVNGRIVASPAINI 87 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (369)
+.+|||||.||.+||..|+ +..+|+||..++..-- .+..+..+.. .++ +......-.-+ -+|+.. +..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yle-kfdv~eq~~~elg~~f--~~~~~~-v~~~ 76 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLE-KFDVKEQNCHELGPDF--RRFLND-VVTW 76 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHH-hcCccccchhhhcccH--HHHHHh-hhhh
Confidence 3689999999999998775 5789999998764320 0111111110 010 00000000000 022333 3333
Q ss_pred e--cceEEecCCeEEeccEEEEccCCCCCCC--CCh-----HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhh
Q 046865 88 T--ENEVLTAEGRRVVYDYLVIATGHKDPVP--KTR-----TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD 158 (369)
Q Consensus 88 ~--~~~v~~~~g~~~~~d~lviAtG~~~~~p--~~~-----~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~ 158 (369)
+ .+.+.+.+|.++.|++|+++||.+|..- ++. .+.-.+.......+...|.|.|+|.|-+++|++.++.
T Consensus 77 ~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk-- 154 (334)
T KOG2755|consen 77 DSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK-- 154 (334)
T ss_pred ccccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--
Confidence 3 3468888999999999999999998532 110 0111222333445678899999999999999999986
Q ss_pred CCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhC------------CcEEEeCceeee---------------------
Q 046865 159 FPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISK------------KVDVKLGQRVNL--------------------- 204 (369)
Q Consensus 159 ~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~------------gv~i~~~~~v~~--------------------- 204 (369)
..+|+|....+.+.. .++|.+.+.+...++.. .++.+.++.-..
T Consensus 155 --~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~es 232 (334)
T KOG2755|consen 155 --ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISES 232 (334)
T ss_pred --cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhh
Confidence 789999988877765 56666666665555110 111111110000
Q ss_pred --------------ccCCCCCeEEEc---CCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeecc
Q 046865 205 --------------DSVSEGSDTYLT---STG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKG 265 (369)
Q Consensus 205 --------------i~~~~~~~~v~~---~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~ 265 (369)
+....+...+.. ..+ ..+.+|++++|+|..||+++.-...+ +..++|.+.||+.|+| +
T Consensus 233 eer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-s 309 (334)
T KOG2755|consen 233 ENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-S 309 (334)
T ss_pred hhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-c
Confidence 000000001111 111 26789999999999999996655444 5678899999999998 7
Q ss_pred CCCeEEecccCCc
Q 046865 266 QKNIFAIGDITDI 278 (369)
Q Consensus 266 ~~~i~a~GD~~~~ 278 (369)
.|++||+||++..
T Consensus 310 lpdvFa~gDvctt 322 (334)
T KOG2755|consen 310 LPDVFAAGDVCTT 322 (334)
T ss_pred ccceeeecceecc
Confidence 9999999999874
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.80 E-value=5.6e-21 Score=162.40 Aligned_cols=170 Identities=29% Similarity=0.424 Sum_probs=106.5
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc-c-cccee-----ccccc--cccceE-EEee
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF-G-ERSVI-----NHTDY--LVNGRI-VASP 83 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~--~~~~~~-~~~~ 83 (369)
||||||||+||++||.+|+ .+.+|+|||+.+...+....+........ . ..... .+.+. ..++++ +...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 7999999999999999997 59999999998754432211111100000 0 00000 11111 124555 4455
Q ss_pred eeeeecc--eE----------EecCCeEEeccEEEEccCCCCCCCCChH-------HHHHHHHHHHHHHhcCCeEEEEcC
Q 046865 84 AINITEN--EV----------LTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERLNQYQAENQKIKSARSILIVGG 144 (369)
Q Consensus 84 ~~~~~~~--~v----------~~~~g~~~~~d~lviAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~vvG~ 144 (369)
+..++.. .+ ...++.++.||+||+|||+.|..|.++. ..+.+..........+++++|+|
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG- 159 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG- 159 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc-
Confidence 5555532 21 2335578999999999999865443332 22334445555555566888888
Q ss_pred ChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEec
Q 046865 145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKA 224 (369)
Q Consensus 145 G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~ 224 (369)
T Consensus 160 -------------------------------------------------------------------------------- 159 (201)
T PF07992_consen 160 -------------------------------------------------------------------------------- 159 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865 225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR 279 (369)
Q Consensus 225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~ 279 (369)
+++|. ...+++++++|++.||+++|+ +.|||||+|||++.+
T Consensus 160 ------------~~~l~-~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ------------TEFLA-EKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp ------------TTTST-HHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ------------ccccc-ccccccccccccccccccccc-ccccccccccccccC
Confidence 44453 233457789999999999999 699999999999653
No 83
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=5.5e-17 Score=144.06 Aligned_cols=291 Identities=19% Similarity=0.223 Sum_probs=183.0
Q ss_pred CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCccccccccc--------------cccCCcccccc-------
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLR--------------AMVEPSFGERS------- 66 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~~~~~~~~~--------------~~~~~~~~~~~------- 66 (369)
+...+|++.||-||+-|+.|..|.. +.++..+||.+.|.+.+..+- ...+|......
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 4567999999999999999999974 689999999998765433221 11122111100
Q ss_pred ------------------eeccccc----cccceEEEeeee---eeecc-----eEEecCCeEEeccEEEEccCCCCCCC
Q 046865 67 ------------------VINHTDY----LVNGRIVASPAI---NITEN-----EVLTAEGRRVVYDYLVIATGHKDPVP 116 (369)
Q Consensus 67 ------------------~~~~~~~----~~~~~~~~~~~~---~~~~~-----~v~~~~g~~~~~d~lviAtG~~~~~p 116 (369)
+..+-.| +..++| ..++. .++.. .+.+.++..++++.||+++|.+|.+|
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 0000011 111222 22333 22221 25666777999999999999999999
Q ss_pred CCh----HHH-H--HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCC--eEEEEEcCcccccc---------CC
Q 046865 117 KTR----TER-L--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF---------IG 178 (369)
Q Consensus 117 ~~~----~~~-~--~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~--~v~lv~~~~~~l~~---------~~ 178 (369)
+.- ... + .++..........++|.|||+|.+|.|+-..|....+.. ++.|+.|+..++|. |.
T Consensus 161 ~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~ 240 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFS 240 (436)
T ss_pred hHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcC
Confidence 631 111 1 223333444555667999999999999999887655444 58999999877653 22
Q ss_pred cchHHHH-----------------------------------HHHHH--hCCcEEEeCceeeeccCCCCC-eEEEcC---
Q 046865 179 PKAGDKT-----------------------------------LDWLI--SKKVDVKLGQRVNLDSVSEGS-DTYLTS--- 217 (369)
Q Consensus 179 ~~~~~~~-----------------------------------~~~l~--~~gv~i~~~~~v~~i~~~~~~-~~v~~~--- 217 (369)
|+..+.+ ++.+. +..|.++.++.+..++..+++ +.+.+.
T Consensus 241 P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~ 320 (436)
T COG3486 241 PEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE 320 (436)
T ss_pred chhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc
Confidence 3322221 11111 246889999999998877654 555442
Q ss_pred CC--cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeCCceeeccCC----CeEEecccCCcc---ccchhHHH
Q 046865 218 TG--DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVDENLRVKGQK----NIFAIGDITDIR---EIKQGFLA 287 (369)
Q Consensus 218 ~g--~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~----~i~a~GD~~~~~---~~~~~~~A 287 (369)
+| +++++|.||+|||++... .|+....-.+..+++|.+.|+++++....+ .||+.|-+.... .+.++..|
T Consensus 321 ~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a 400 (436)
T COG3486 321 TGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGA 400 (436)
T ss_pred CCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHHH
Confidence 22 478999999999998544 466654433467889999999998774322 699998775432 22344445
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 046865 288 QKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 288 ~~~g~~~a~~i~~~~~g~~ 306 (369)
.+.+ .|++.+.|..
T Consensus 401 ~Raa-----~I~~~L~g~~ 414 (436)
T COG3486 401 WRAA-----VILNSLLGRE 414 (436)
T ss_pred HHHH-----HHHHHHhCcC
Confidence 4443 3444444654
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.77 E-value=3.9e-18 Score=159.33 Aligned_cols=281 Identities=22% Similarity=0.168 Sum_probs=171.5
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccc--cceeccccccc--cceEEEeee
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGE--RSVINHTDYLV--NGRIVASPA 84 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~ 84 (369)
....++|.|||||||||+||..|. .|++|+++|+.+..+.. +. +-.|.+.. .......+++. +++|..+..
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl---l~-yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~ 195 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL---LL-YGIPDFKLPKDILDRRLELLERSGVEFKLNVR 195 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee---EE-ecCchhhccchHHHHHHHHHHHcCeEEEEcce
Confidence 334589999999999999999997 59999999998876632 11 11222211 11111112221 455554433
Q ss_pred eeeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHHHH---HHHHH----HH------H--hcCCeEEEEcCC
Q 046865 85 INITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQ---YQAEN----QK------I--KSARSILIVGGG 145 (369)
Q Consensus 85 ~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~~~---~~~~~----~~------~--~~~~~v~vvG~G 145 (369)
+..+ +..+. ..-.||.++++||+. |. +|+.+...+.. +.... .. . ...++++|||+|
T Consensus 196 vG~~---it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG 271 (457)
T COG0493 196 VGRD---ITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGG 271 (457)
T ss_pred ECCc---CCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCC
Confidence 3222 11111 123569999999987 33 45443222111 11110 00 0 112899999999
Q ss_pred hhHHHHHHHHhhhCCCC-eEEEEEcCccc--cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-E---E--
Q 046865 146 PTGVELAGEIAVDFPEK-KVTLVHKGSRL--LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-Y---L-- 215 (369)
Q Consensus 146 ~~g~e~a~~l~~~~~~~-~v~lv~~~~~~--l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v---~-- 215 (369)
.++++++.... +.|. +|+.+.+...- ....+........+....+|+.........++..++ +.+. + .
T Consensus 272 ~Ta~D~~~t~~--r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~ 349 (457)
T COG0493 272 DTAMDCAGTAL--RLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVE 349 (457)
T ss_pred CCHHHHHHHHh--hcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeeccccc
Confidence 99999997655 3454 78877532221 112223345555667777888877776665555422 2211 1 1
Q ss_pred cC--------------CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCce-eeccCCCeEEecccCCc
Q 046865 216 TS--------------TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL-RVKGQKNIFAIGDITDI 278 (369)
Q Consensus 216 ~~--------------~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l-~~~~~~~i~a~GD~~~~ 278 (369)
.. .| .++++|.|+.+.|..++..........+..+..|.+.+++.+ +| +.|++||.||+...
T Consensus 350 ~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g 428 (457)
T COG0493 350 PGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG 428 (457)
T ss_pred ccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccc
Confidence 10 12 267899999999998775442222213467888999999998 66 79999999999975
Q ss_pred cccchhHHHHHHHHHHHHHHH-HHhh
Q 046865 279 REIKQGFLAQKHAQVAAKNLK-VLMV 303 (369)
Q Consensus 279 ~~~~~~~~A~~~g~~~a~~i~-~~~~ 303 (369)
. .+...|+.+|+.+|+-|. .++.
T Consensus 429 ~--~~vv~ai~eGr~aak~i~~~~l~ 452 (457)
T COG0493 429 A--ALVVWAIAEGREAAKAIDKELLL 452 (457)
T ss_pred h--hhhhhHHhhchHHHHhhhHHHHh
Confidence 3 357899999999999998 4443
No 85
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.73 E-value=3.1e-17 Score=149.23 Aligned_cols=222 Identities=19% Similarity=0.253 Sum_probs=118.4
Q ss_pred cceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCcccccccccc--------------ccCCcccc------------
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRA--------------MVEPSFGE------------ 64 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~~~~~~~~~~--------------~~~~~~~~------------ 64 (369)
.+|+|+||.||++|+.|..|.. ..++..+|+++.+.+....+.. ..+|....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 5899999999999999999863 6999999999877544322111 11111110
Q ss_pred -------------cceeccccc----cccceEEEeeeeeeecc--------eEEec----CCeEEeccEEEEccCCCCCC
Q 046865 65 -------------RSVINHTDY----LVNGRIVASPAINITEN--------EVLTA----EGRRVVYDYLVIATGHKDPV 115 (369)
Q Consensus 65 -------------~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~v~~~----~g~~~~~d~lviAtG~~~~~ 115 (369)
..+..+-.| +...-.+..+|..+... .|.+. ++..+.+++||+|||..|.+
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 000011111 12212234455555421 44442 34689999999999999999
Q ss_pred CCChH-----HHH---HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------CC
Q 046865 116 PKTRT-----ERL---NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG 178 (369)
Q Consensus 116 p~~~~-----~~~---~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------~~ 178 (369)
|.... ..+ .++....+.....++|+|||||.+|.|++..|.++.+..+|+++.|++.+.+. +.
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 87421 111 12222222356789999999999999999999987666899999999766442 12
Q ss_pred cch-------------------------------HHHHHH-----HH-HhCCcEEEeCceeeeccCCC-CCeEEEcCC--
Q 046865 179 PKA-------------------------------GDKTLD-----WL-ISKKVDVKLGQRVNLDSVSE-GSDTYLTST-- 218 (369)
Q Consensus 179 ~~~-------------------------------~~~~~~-----~l-~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~-- 218 (369)
|+. .+.+.+ .+ .+..++++.++.|+.++..+ +.+.+.+.+
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~ 321 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ 321 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence 221 111111 11 23457899999999998766 477776654
Q ss_pred -C--cEEeccEEEEcCCCC
Q 046865 219 -G--DTIKADCHFLCTGKP 234 (369)
Q Consensus 219 -g--~~i~~d~vi~a~G~~ 234 (369)
+ .++++|.||+|||++
T Consensus 322 ~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 322 TGEEETLEVDAVILATGYR 340 (341)
T ss_dssp T--EEEEEESEEEE---EE
T ss_pred CCCeEEEecCEEEEcCCcc
Confidence 2 478999999999985
No 86
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.69 E-value=3.7e-15 Score=134.52 Aligned_cols=199 Identities=20% Similarity=0.173 Sum_probs=126.0
Q ss_pred EEeccEEEEccCCCCCCCCCh-------HHHH---HHHHHHHH-------------HHhcCCeEEE---EcCCh------
Q 046865 99 RVVYDYLVIATGHKDPVPKTR-------TERL---NQYQAENQ-------------KIKSARSILI---VGGGP------ 146 (369)
Q Consensus 99 ~~~~d~lviAtG~~~~~p~~~-------~~~~---~~~~~~~~-------------~~~~~~~v~v---vG~G~------ 146 (369)
++....+|+|||..+.-+.-. ...+ .+++++.. .-..+++++. +|+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 577889999999985433211 0111 22333321 1134788776 45432
Q ss_pred --------hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC
Q 046865 147 --------TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST 218 (369)
Q Consensus 147 --------~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~ 218 (369)
..+.-|+.+++++|..+|+++.-.-|... ...-+.+.+.-++.||+++.+....-.+..++.+.|..+|
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG---~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~Ed 454 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG---KDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVED 454 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC---ccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEe
Confidence 35566777788899999999987655433 2333444444447899999885443333334444554433
Q ss_pred ---C--cEEeccEEEEcCCCCCCchhhcc-cccCCCCCCCCcEEeC-Cceee--ccCCCeEEecccCCccccchhHHHHH
Q 046865 219 ---G--DTIKADCHFLCTGKPVGSDWLKD-TILKDSLDTDGMLMVD-ENLRV--KGQKNIFAIGDITDIREIKQGFLAQK 289 (369)
Q Consensus 219 ---g--~~i~~d~vi~a~G~~p~~~~l~~-~~~~~~~~~~g~i~vd-~~l~~--~~~~~i~a~GD~~~~~~~~~~~~A~~ 289 (369)
| .++++|+|++++|..|....-.. ..++++.+++||+... +.++. ++.++||.+|-+.+. +....++.
T Consensus 455 Tl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP---kdI~~sia 531 (622)
T COG1148 455 TLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP---KDIADSIA 531 (622)
T ss_pred ccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC---ccHHHHHH
Confidence 3 37899999999999985432111 2355678899999875 55543 247899999988754 45677888
Q ss_pred HHHHHHHHHHHHhh
Q 046865 290 HAQVAAKNLKVLMV 303 (369)
Q Consensus 290 ~g~~~a~~i~~~~~ 303 (369)
||..||......+.
T Consensus 532 qa~aAA~kA~~~l~ 545 (622)
T COG1148 532 QAKAAAAKAAQLLG 545 (622)
T ss_pred HhHHHHHHHHHHhh
Confidence 88888777766653
No 87
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.64 E-value=2.1e-14 Score=133.73 Aligned_cols=160 Identities=14% Similarity=0.024 Sum_probs=113.2
Q ss_pred EEEcCChhHHHHH-HHHhh--hCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE-E
Q 046865 140 LIVGGGPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY-L 215 (369)
Q Consensus 140 ~vvG~G~~g~e~a-~~l~~--~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v-~ 215 (369)
.|++.+.+|+|.+ ..+.+ ...|.+|+++...+..++.. ++.+.+.+.+++.|++++++++|.+++.+++.+.. .
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~ 296 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVW 296 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 6788999999998 55532 24699999999998888765 78899999999999999999999998765554433 3
Q ss_pred cCCCc--EEeccEEEEcCCCCCCchhh------ccc--ccCCCCC-----------------CCCcEEeCCceee-----
Q 046865 216 TSTGD--TIKADCHFLCTGKPVGSDWL------KDT--ILKDSLD-----------------TDGMLMVDENLRV----- 263 (369)
Q Consensus 216 ~~~g~--~i~~d~vi~a~G~~p~~~~l------~~~--~~~~~~~-----------------~~g~i~vd~~l~~----- 263 (369)
..+|+ .+++|.+|+|+|+.++..+. .+. ++++... ..=.|.+|+.||.
T Consensus 297 ~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g 376 (422)
T PRK05329 297 TRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQG 376 (422)
T ss_pred eeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCC
Confidence 34443 58999999999987554321 110 1111000 0112667777665
Q ss_pred -ccCCCeEEecccCCccccc---h-hHHHHHHHHHHHHHHHHH
Q 046865 264 -KGQKNIFAIGDITDIREIK---Q-GFLAQKHAQVAAKNLKVL 301 (369)
Q Consensus 264 -~~~~~i~a~GD~~~~~~~~---~-~~~A~~~g~~~a~~i~~~ 301 (369)
+..+|+||+|++.+.+.+. . .-.|+..|..|+++|...
T Consensus 377 ~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 377 GPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 2479999999999876541 1 137888899999998743
No 88
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.63 E-value=7.5e-15 Score=138.52 Aligned_cols=163 Identities=22% Similarity=0.340 Sum_probs=101.8
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCc-EEEEcCCCCccccccccc--ccc--CC----ccc---c---cce-----
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLR--AMV--EP----SFG---E---RSV----- 67 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~~~~~~~~~--~~~--~~----~~~---~---~~~----- 67 (369)
+...++||+|||||++||++|++|+ .|.. ++++||++..|..|-..+ ... .+ .++ . ..+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 4456799999999999999999997 4777 999999987775532211 000 00 000 0 000
Q ss_pred -----eccccccc---cceEEEe-eeeeeecc----eEEecCCeE--EeccEEEEccCCC--CCCCCChH------HHHH
Q 046865 68 -----INHTDYLV---NGRIVAS-PAINITEN----EVLTAEGRR--VVYDYLVIATGHK--DPVPKTRT------ERLN 124 (369)
Q Consensus 68 -----~~~~~~~~---~~~~~~~-~~~~~~~~----~v~~~~g~~--~~~d~lviAtG~~--~~~p~~~~------~~~~ 124 (369)
..+.+.+. .+++... ++...+.+ +|.++++.. +.+|+||+|||.. |.+|.++. ..++
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence 01111111 1222111 12233322 567766654 5699999999975 66666432 2223
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
+..........+|+|+|||+|.+|++++.+|.+. +.+|+++.|++..
T Consensus 164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--ga~vt~~qRs~~~ 210 (443)
T COG2072 164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEV--GASVTLSQRSPPH 210 (443)
T ss_pred hhcCCCccccCCCeEEEECCCccHHHHHHHHHhc--CCeeEEEecCCCc
Confidence 3222223446789999999999999999999864 6999999998643
No 89
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.63 E-value=1e-15 Score=149.14 Aligned_cols=281 Identities=20% Similarity=0.178 Sum_probs=153.2
Q ss_pred CCCcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccccccccccCCccccc--ceecccccc--ccceEEEeee
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGER--SVINHTDYL--VNGRIVASPA 84 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~ 84 (369)
...-++|.|||+|||||+||-.|.+ |+.|+++||.+..|.. + .+--|....+ ...+..+++ .+++|+...-
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl---l-~ygipnmkldk~vv~rrv~ll~~egi~f~tn~e 1857 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL---L-MYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTE 1857 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce---e-eecCCccchhHHHHHHHHHHHHhhCceEEeecc
Confidence 3456899999999999999999965 9999999999987632 1 1111222111 111122222 2566654332
Q ss_pred eeeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHH-------HHHH-HHHH-------HHhcCCeEEEEcCC
Q 046865 85 INITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERL-------NQYQ-AENQ-------KIKSARSILIVGGG 145 (369)
Q Consensus 85 ~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~-------~~~~-~~~~-------~~~~~~~v~vvG~G 145 (369)
+ .. .+.+ |+-.-.+|.+|+|+|+. |+ +|+-+...+ +... .+.+ .....++|+|+|||
T Consensus 1858 i--gk-~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkviviggg 1933 (2142)
T KOG0399|consen 1858 I--GK-HVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGG 1933 (2142)
T ss_pred c--cc-cccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCC
Confidence 2 11 2322 33345689999999998 43 444332221 1111 0111 11346899999999
Q ss_pred hhHHHHHHHHhhhCCCC-eEEEEEcCccc---------cccCCc----ch-HHHHHHHHHhC--CcEEEe----------
Q 046865 146 PTGVELAGEIAVDFPEK-KVTLVHKGSRL---------LEFIGP----KA-GDKTLDWLISK--KVDVKL---------- 198 (369)
Q Consensus 146 ~~g~e~a~~l~~~~~~~-~v~lv~~~~~~---------l~~~~~----~~-~~~~~~~l~~~--gv~i~~---------- 198 (369)
.+|-++...-. +.|+ .|.-++--|.. .|.++. +. .+..++..-+- --.+.+
T Consensus 1934 dtg~dcigtsv--rhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~ 2011 (2142)
T KOG0399|consen 1934 DTGTDCIGTSV--RHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGN 2011 (2142)
T ss_pred Cccccccccch--hhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCc
Confidence 99988765433 2243 33333221111 111111 00 11222221110 011111
Q ss_pred --Cceeeecc--CCCCC-eEEE-c-CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEe-CCceeeccCCCeE
Q 046865 199 --GQRVNLDS--VSEGS-DTYL-T-STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMV-DENLRVKGQKNIF 270 (369)
Q Consensus 199 --~~~v~~i~--~~~~~-~~v~-~-~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~v-d~~l~~~~~~~i~ 270 (369)
+-+..+++ .++.+ .... . .+.+.++||++|+|.|+.- ++....+.+.++.|+++.|.. ++.+.+ +.+.||
T Consensus 2012 v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~g-pe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vf 2089 (2142)
T KOG0399|consen 2012 VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVG-PEKSVIEQLNLKTDPRSNILTPKDSYST-DVAKVF 2089 (2142)
T ss_pred eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccC-cchhhhhhcCcccCccccccCCCccccc-ccccee
Confidence 11111222 12222 1111 1 1224789999999999863 222223345557788877765 345666 699999
Q ss_pred EecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 271 AIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 271 a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
|+|||-.... +..+|+++||.+|+.+-....+
T Consensus 2090 aagdcrrgqs--lvvwai~egrq~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2090 AAGDCRRGQS--LVVWAIQEGRQAARQVDELMGG 2121 (2142)
T ss_pred ecccccCCce--EEEEEehhhhHHHHHHHHHhCC
Confidence 9999986543 5678999999999998754433
No 90
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.60 E-value=8.5e-16 Score=130.72 Aligned_cols=154 Identities=27% Similarity=0.405 Sum_probs=83.6
Q ss_pred EEECCChHHHHHHHHcc-cCCc-EEEEcCCCCcccccccccc---ccCCccc-------c---------------cceec
Q 046865 17 VVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRA---MVEPSFG-------E---------------RSVIN 69 (369)
Q Consensus 17 vIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~~~~~~~~~~---~~~~~~~-------~---------------~~~~~ 69 (369)
+|||||++||++|..|. .|.+ ++|+|+++.+|..|..... ...+... . .....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 79999999999999986 5888 9999999888766543211 1111100 0 00000
Q ss_pred c---ccccc------cceEE-Eeeeeeeecc----eEEecCCeEEeccEEEEccCC--CCCCCCChH-H---HHHHHHHH
Q 046865 70 H---TDYLV------NGRIV-ASPAINITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-E---RLNQYQAE 129 (369)
Q Consensus 70 ~---~~~~~------~~~~~-~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~--~~~~p~~~~-~---~~~~~~~~ 129 (369)
. .+++. +.++. ..++..+... .|.+.+++++.+|+||+|||. .|..|.++. . .++.....
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~ 160 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR 160 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence 0 00000 22332 2345555432 677878888999999999996 566665544 1 11111111
Q ss_pred HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (369)
Q Consensus 130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~ 172 (369)
.......++|+|||+|.+|++++..|.+. +.+|+++.|++.
T Consensus 161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~~--g~~V~~~~R~~~ 201 (203)
T PF13738_consen 161 DPEDFKGKRVVVVGGGNSAVDIAYALAKA--GKSVTLVTRSPI 201 (203)
T ss_dssp TTGGCTTSEEEEE--SHHHHHHHHHHTTT--CSEEEEEESS--
T ss_pred ChhhcCCCcEEEEcChHHHHHHHHHHHhh--CCEEEEEecCCC
Confidence 11234569999999999999999999854 799999999873
No 91
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=3.2e-14 Score=132.50 Aligned_cols=217 Identities=19% Similarity=0.281 Sum_probs=126.0
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------c--ccc----------CCccc--cc--
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------R--AMV----------EPSFG--ER-- 65 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------~--~~~----------~~~~~--~~-- 65 (369)
...++|+|||||+|||++|+.|. .|++++++||.+.+|..|.-. . ..+ -++++ .+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 34789999999999999999986 599999999999988766432 1 000 01111 00
Q ss_pred -------ceecccc-cccc------ceEEEeeeeee---e-cc-eEEecCC----eEEeccEEEEccCCC--CCCCCChH
Q 046865 66 -------SVINHTD-YLVN------GRIVASPAINI---T-EN-EVLTAEG----RRVVYDYLVIATGHK--DPVPKTRT 120 (369)
Q Consensus 66 -------~~~~~~~-~~~~------~~~~~~~~~~~---~-~~-~v~~~~g----~~~~~d~lviAtG~~--~~~p~~~~ 120 (369)
.+..+.+ +.+. ++| ...+..+ + .+ .|...++ +..-||.|++|||.. |.+|.++.
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 1111111 1111 222 2222233 3 12 3444333 467899999999988 67776533
Q ss_pred --------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC
Q 046865 121 --------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK 192 (369)
Q Consensus 121 --------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~ 192 (369)
..+++...........++|+|||+|.+|+|++.+++.. ..+|++..+ . + .........+ -.
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~--ak~v~~~~~-~---~----~~~~~~~~~~-~~ 231 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRV--AKEVHLSVV-S---P----KVHVEPPEIL-GE 231 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHh--ccCcceeee-c---c----ccccccccee-ec
Confidence 12333333333445679999999999999999998743 566776654 1 0 0000011111 11
Q ss_pred CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccc
Q 046865 193 KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI 244 (369)
Q Consensus 193 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~ 244 (369)
++..+.. |.....+ + .+.+.++....+|.+|+|||+.-..+++....
T Consensus 232 ~~~~~~~--i~~~~e~--~-~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 232 NLWQVPS--IKSFTED--G-SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ceEEccc--cccccCc--c-eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 2222221 3333211 1 23445667889999999999998777766543
No 92
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.54 E-value=5.2e-14 Score=100.48 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=73.3
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS 217 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~ 217 (369)
+++|+|||++|+|+|..|.+ .+.+|+++++.+.+++.+++++.+.+++.++++||++++++.+.+++.+++.+.|+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 58999999999999999985 4899999999999999999999999999999999999999999999877666667777
Q ss_pred CC
Q 046865 218 TG 219 (369)
Q Consensus 218 ~g 219 (369)
||
T Consensus 79 ~g 80 (80)
T PF00070_consen 79 DG 80 (80)
T ss_dssp TS
T ss_pred cC
Confidence 76
No 93
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.47 E-value=2.7e-12 Score=113.05 Aligned_cols=279 Identities=18% Similarity=0.145 Sum_probs=151.0
Q ss_pred CCcceEEEECCChHHHHHHHHc-c--cCCcEEEEcCCCCccccccccccccCCcccccce-e-cccccc--ccceEEEee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSL-Q--FSADVTLIDPKEYFEITWASLRAMVEPSFGERSV-I-NHTDYL--VNGRIVASP 83 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l-~--~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~~~ 83 (369)
...++|+|||+||||+.+|..| + .+.+|.|+|+.+... +..+..+.|+.++... + .+...+ ..+.|+...
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv 94 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNV 94 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceEEEecc
Confidence 3456999999999999999886 4 268999999987533 4444445554443210 0 011111 122332221
Q ss_pred eeeeecceEEecCCeEEeccEEEEccCCC----CCCCCChHHHHHHHHHHH------------HHHhcCCeEEEEcCChh
Q 046865 84 AINITENEVLTAEGRRVVYDYLVIATGHK----DPVPKTRTERLNQYQAEN------------QKIKSARSILIVGGGPT 147 (369)
Q Consensus 84 ~~~~~~~~v~~~~g~~~~~d~lviAtG~~----~~~p~~~~~~~~~~~~~~------------~~~~~~~~v~vvG~G~~ 147 (369)
-+.- .+.+. .-+-.||.+|||+|+. -.+|+.+...+.+..... +......+++|||.|.+
T Consensus 95 ~vG~---dvsl~-eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNV 170 (468)
T KOG1800|consen 95 KVGR---DVSLK-ELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNV 170 (468)
T ss_pred eecc---cccHH-HHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCch
Confidence 1110 12221 1235799999999998 347765433322221111 11122688999999999
Q ss_pred HHHHHHHHhhh--------------------CCCCeEEEEEcCccc--------------cc-------c-------C--
Q 046865 148 GVELAGEIAVD--------------------FPEKKVTLVHKGSRL--------------LE-------F-------I-- 177 (369)
Q Consensus 148 g~e~a~~l~~~--------------------~~~~~v~lv~~~~~~--------------l~-------~-------~-- 177 (369)
++++|..|... ..-++|+++.|...+ ++ . +
T Consensus 171 AlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~ 250 (468)
T KOG1800|consen 171 ALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDE 250 (468)
T ss_pred hhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCc
Confidence 99999887631 012468888876322 11 0 0
Q ss_pred --------CcchHHHHHHHHHhCC---------cE----EEeCceeeeccCC-CC--CeE-----------EEcCCCcEE
Q 046865 178 --------GPKAGDKTLDWLISKK---------VD----VKLGQRVNLDSVS-EG--SDT-----------YLTSTGDTI 222 (369)
Q Consensus 178 --------~~~~~~~~~~~l~~~g---------v~----i~~~~~v~~i~~~-~~--~~~-----------v~~~~g~~i 222 (369)
-+++.+.+.+.++++. .+ .+..+. ..|..+ ++ .+. +.+.+-+++
T Consensus 251 ~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P-~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~ 329 (468)
T KOG1800|consen 251 SETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTP-GAILPGADGVSGVRFQVTILEGTQAVPTGAFETL 329 (468)
T ss_pred ccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCH-HHhccCcccccceEEEeeeehhhcccccCceEee
Confidence 0133344444443311 11 000111 111111 11 111 111122479
Q ss_pred eccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeec---cCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865 223 KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVK---GQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK 299 (369)
Q Consensus 223 ~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~---~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~ 299 (369)
+|++++.+.|++... +.. ++ ..|.+..+.-|...+.. -.|++|+.|-|...|.- -....+++|..+|..|.
T Consensus 330 p~~l~i~sIGYks~p--v~~-gi--pFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~G-vIattm~dAf~v~d~I~ 403 (468)
T KOG1800|consen 330 PCGLLIRSIGYKSVP--VDS-GI--PFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTG-VIATTMQDAFEVADTIV 403 (468)
T ss_pred ccceeEeeeeecccc--cCC-CC--CcccccCcccCCCceEEeeccCCceEEEeeeccCCcc-eeeehhhhHHHHHHHHH
Confidence 999999999997432 111 22 34444444444444431 25999999999976542 12356788999999998
Q ss_pred HHhh
Q 046865 300 VLMV 303 (369)
Q Consensus 300 ~~~~ 303 (369)
+.+.
T Consensus 404 qD~~ 407 (468)
T KOG1800|consen 404 QDLK 407 (468)
T ss_pred HHHH
Confidence 7765
No 94
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.46 E-value=2.2e-12 Score=120.34 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=77.9
Q ss_pred CcceEEEECCChHHHHHHHHc-c-cCCcEEEEcCCCCccccccccccccCCcccc-cce-ecccccc--ccceEEEeeee
Q 046865 12 KNKRVVVIGGGVAGSLVAKSL-Q-FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RSV-INHTDYL--VNGRIVASPAI 85 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l-~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~ 85 (369)
..++|+||||||||++||.+| + .|++|+|+|+.+..+ +.++..+.+.... +.. ..+...+ .+++|... +
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg---GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gn--v 112 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY---GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGN--V 112 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc---cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEee--e
Confidence 467999999999999999875 3 599999999998776 3333333332211 111 1111111 23445421 1
Q ss_pred eeecceEEecCCeEEeccEEEEccCCCCC-CC------------CCh----HHHH---HHH----------H---HH---
Q 046865 86 NITENEVLTAEGRRVVYDYLVIATGHKDP-VP------------KTR----TERL---NQY----------Q---AE--- 129 (369)
Q Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~p------------~~~----~~~~---~~~----------~---~~--- 129 (369)
.+.. .+..++- .-.||.+|+|+|+.+. +| +.+ .... .++ . ..
T Consensus 113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ay 190 (506)
T PTZ00188 113 HVGV-DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNY 190 (506)
T ss_pred EecC-ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccc
Confidence 1111 1222222 2389999999999854 33 211 0010 000 0 00
Q ss_pred HHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865 130 NQKIKSARSILIVGGGPTGVELAGEIA 156 (369)
Q Consensus 130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~ 156 (369)
+......++++|||.|.+++++|..|.
T Consensus 191 L~p~~~~~~vvVIG~GNVAlDvARiL~ 217 (506)
T PTZ00188 191 LNSFENFTTSIIIGNGNVSLDIARILI 217 (506)
T ss_pred ccccCCCCcEEEECCCchHHHHHHHHc
Confidence 000114578999999999999999764
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.46 E-value=2e-12 Score=115.61 Aligned_cols=65 Identities=25% Similarity=0.221 Sum_probs=55.2
Q ss_pred CccccccC--CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 170 GSRLLEFI--GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 170 ~~~~l~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..++.|.. ..++.+.+.+.+++.||+++++++|..++.++....+.+.+|+++.||.+|+|+|-.
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence 34555542 347889999999999999999999999998877888999999899999999999943
No 96
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.25 E-value=7.9e-11 Score=109.60 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=47.4
Q ss_pred EEcCccccccC--CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCCC
Q 046865 167 VHKGSRLLEFI--GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 167 v~~~~~~l~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.++.|.. ..++.+.+++.+++.||+++++++|..++.+++. ..+.+++++++.+|.||+|+|-..
T Consensus 95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 44556666643 3467889999999999999999999999876665 778776777999999999999753
No 97
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=1.6e-09 Score=99.51 Aligned_cols=159 Identities=22% Similarity=0.359 Sum_probs=96.4
Q ss_pred cceEEEECCChHHHHHHHHccc----CCcEEEEcCCCCccc--cccc-----------cccccC-Cccc-----------
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEI--TWAS-----------LRAMVE-PSFG----------- 63 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~----g~~V~lie~~~~~~~--~~~~-----------~~~~~~-~~~~----------- 63 (369)
+++|+|||||+.|+.+|.+|.+ ...|.|+|+.+.+|. ++.. ...... ++.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4799999999999999998842 233999999987652 1100 000000 1100
Q ss_pred ------------ccceeccc---cc--------c---c--cceEEEeeeeeeecc------eEEecCCeEEeccEEEEcc
Q 046865 64 ------------ERSVINHT---DY--------L---V--NGRIVASPAINITEN------EVLTAEGRRVVYDYLVIAT 109 (369)
Q Consensus 64 ------------~~~~~~~~---~~--------~---~--~~~~~~~~~~~~~~~------~v~~~~g~~~~~d~lviAt 109 (369)
...+.+.. +| . . .+.+++..++.+... .+...+|....+|-+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00000000 00 0 0 145566666555432 4566678888999999999
Q ss_pred CCCCCCCCChHHH-------HHHHH--HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 110 GHKDPVPKTRTER-------LNQYQ--AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 110 G~~~~~p~~~~~~-------~~~~~--~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
|..+..++..... +.+.. ..+.......+++|+|+|.+.++....|..+....+||++.|..
T Consensus 161 gh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 9885544321110 11111 22334455677999999999999999998765667899999874
No 98
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.10 E-value=2.1e-10 Score=106.07 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=52.4
Q ss_pred eEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCC
Q 046865 163 KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 163 ~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.-.+.......+ .+..+.+.+.+.+++.|++++++++|+++..+++.+. |.+.+|+ +.+|.||+|+|...
T Consensus 133 ~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 133 EGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 334444443322 2357889999999999999999999999988777776 8899996 99999999999863
No 99
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.01 E-value=1.8e-10 Score=113.07 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=71.8
Q ss_pred hcCCeEEEEcCCh--hHHHHHHHHhhhCCCCeEEEEEcCccccccCC--------------cchHHHHHHHHHhCCcEEE
Q 046865 134 KSARSILIVGGGP--TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG--------------PKAGDKTLDWLISKKVDVK 197 (369)
Q Consensus 134 ~~~~~v~vvG~G~--~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~--------------~~~~~~~~~~l~~~gv~i~ 197 (369)
..+.++.|+|+++ ++.|++..+. ..+.+++++.+..++++.++ ..+...+.+.+++.|++|+
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~ 232 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFN--ATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPIL 232 (574)
T ss_pred CCcccccccceecccchHHHHHHHh--hccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEE
Confidence 4678889999988 7899998876 34677777666555554322 3567778888899999999
Q ss_pred eCceeeeccCCCCCe-EEEc--CCCc-EEecc-EEEEcCCCCC
Q 046865 198 LGQRVNLDSVSEGSD-TYLT--STGD-TIKAD-CHFLCTGKPV 235 (369)
Q Consensus 198 ~~~~v~~i~~~~~~~-~v~~--~~g~-~i~~d-~vi~a~G~~p 235 (369)
+++.|.++..+++.+ .+.. .+++ .+.++ .||+|||..+
T Consensus 233 ~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 233 TGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred eCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 999999887655532 2333 3343 47786 7999999655
No 100
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.00 E-value=1.8e-08 Score=93.20 Aligned_cols=146 Identities=17% Similarity=0.097 Sum_probs=94.4
Q ss_pred HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCC--cEEeccE
Q 046865 150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTG--DTIKADC 226 (369)
Q Consensus 150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g--~~i~~d~ 226 (369)
++...|.+ ..++.|..+--.|.- -...++.+.+.+.++++|++++.++.|.+++.+++.+. +.+.++ .++++|.
T Consensus 237 ~~~~~L~~-~~g~~v~E~ptlPPS--v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~ 313 (419)
T TIGR03378 237 ELLRELEQ-ATGLTLCELPTMPPS--LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADH 313 (419)
T ss_pred HHHHHHHH-HHCCCEEeCCCCCCC--CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCE
Confidence 44455554 346666655322211 12357889999999999999999999998876666554 444555 4899999
Q ss_pred EEEcCCCCCCchhhc------cc--ccCCCCCC-----------------CCcEEeCCceeec----cCCCeEEecccCC
Q 046865 227 HFLCTGKPVGSDWLK------DT--ILKDSLDT-----------------DGMLMVDENLRVK----GQKNIFAIGDITD 277 (369)
Q Consensus 227 vi~a~G~~p~~~~l~------~~--~~~~~~~~-----------------~g~i~vd~~l~~~----~~~~i~a~GD~~~ 277 (369)
+|+|+|..-+..++. +. ++++...+ .=.|.+|++||.. ..+|+||+|-+.+
T Consensus 314 vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~ 393 (419)
T TIGR03378 314 FVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLG 393 (419)
T ss_pred EEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhc
Confidence 999999872222211 11 12211000 1137899999841 2789999999987
Q ss_pred ccccc-h---hHHHHHHHHHHHHHH
Q 046865 278 IREIK-Q---GFLAQKHAQVAAKNL 298 (369)
Q Consensus 278 ~~~~~-~---~~~A~~~g~~~a~~i 298 (369)
...+. . .-.|+..|..||++|
T Consensus 394 G~d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 394 GYDPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CCChHhcCCCchhHHHHHHHHHHhh
Confidence 75431 1 237788888888876
No 101
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.00 E-value=2.1e-09 Score=99.28 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=52.2
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcE-EeccEEEEcCCCCCCchhhccccc
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDT-IKADCHFLCTGKPVGSDWLKDTIL 245 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-i~~d~vi~a~G~~p~~~~l~~~~~ 245 (369)
++...+.+.++++|+++++|++|+.++..++ ...+.+.+|++ ++|++||.|.|-.. ..++...++
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~ 220 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI 220 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence 6788888999999999999999999988766 46667788876 99999999999863 344444443
No 102
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.98 E-value=9.8e-09 Score=89.76 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=69.2
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCC--e-EEEcC-----------CCcEEeccEEEEcCCCCC-Cchhhcccc
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--D-TYLTS-----------TGDTIKADCHFLCTGKPV-GSDWLKDTI 244 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~-----------~g~~i~~d~vi~a~G~~p-~~~~l~~~~ 244 (369)
++.+.+.+.+.+.|++++.++.+.++..+++. + .+.+. +..+++++.||.|||... ...++....
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 66777778888899999999999987654441 2 22221 124789999999999653 333332221
Q ss_pred -cCCCCC---CCCcE--------EeCCceeeccCCCeEEecccCCc--cccchh--HHH-HHHHHHHHHHHHHHh
Q 046865 245 -LKDSLD---TDGML--------MVDENLRVKGQKNIFAIGDITDI--REIKQG--FLA-QKHAQVAAKNLKVLM 302 (369)
Q Consensus 245 -~~~~~~---~~g~i--------~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~~A-~~~g~~~a~~i~~~~ 302 (369)
+..... ..+.. .|+..-+. +|++|++|=.+.. ..+..+ .-+ .-+|+.+|+-|+..+
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 111110 01111 12222222 8999999976542 111111 122 357888888887544
No 103
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.97 E-value=5.7e-09 Score=97.59 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+.+.+.+.+++.|++++.+++|.+++.+++.+.+.+.++ ++.+|.||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 36777888888889999999999999887666666777666 79999999999975
No 104
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.96 E-value=1.6e-08 Score=88.62 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCC-Ce-EEEcC-----------CCcEEeccEEEEcCCCCCCc-hhhcccc
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SD-TYLTS-----------TGDTIKADCHFLCTGKPVGS-DWLKDTI 244 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~-----------~g~~i~~d~vi~a~G~~p~~-~~l~~~~ 244 (369)
.++...+.+.+++.|++++.++.+.++..+++ .+ .+... +..++.++.||.|||..... ..+....
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 36677788888889999999999988765443 22 12111 22479999999999974332 1111100
Q ss_pred c--CC------CC--CCCCcEEeCCceeeccCCCeEEecccCCc--cccchh--HHH-HHHHHHHHHHHHHHhh
Q 046865 245 L--KD------SL--DTDGMLMVDENLRVKGQKNIFAIGDITDI--REIKQG--FLA-QKHAQVAAKNLKVLMV 303 (369)
Q Consensus 245 ~--~~------~~--~~~g~i~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~~A-~~~g~~~a~~i~~~~~ 303 (369)
. .. ++ +......|+..-+. +|++|++|=++.. ..+..+ .-+ .-+|+.+|+-|+..++
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 0 00 01 11122334444444 8999999976542 111111 122 3578889998887664
No 105
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.94 E-value=7.9e-09 Score=93.26 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=79.4
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---c--------cccC-----CcchHHHHHHHHHhCCcEEEeCce
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTLDWLISKKVDVKLGQR 201 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~~~~ 201 (369)
+++|||+|+.|+++|..|.+ .+.+|+++++.+. + .|.+ +.++...+.+.+++.|+++++ +.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~ 78 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EE 78 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence 58999999999999999974 4899999998651 1 1222 246778888889999999999 78
Q ss_pred eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
|..++.+++...+.+.+++++.+|.+|+|+|.+|+.+
T Consensus 79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 8888776666677777888999999999999988654
No 106
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.94 E-value=1e-08 Score=97.19 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
++-+.+.+.+++.|++++.+++|.++..+++.+.....+|.++.+|.||.|+|..
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 4556677777889999999999998875555443344567789999999999973
No 107
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.93 E-value=7.3e-09 Score=97.29 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=47.7
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
++.+.+.+.+.+++.|++++.++.|..++.+++.+.+.+.+| ++.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 357888888999999999999999998876666666777666 799999999999864
No 108
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.93 E-value=1.4e-08 Score=95.32 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE-cCCCcEEeccEEEEcCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL-TSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~i~~d~vi~a~G~ 233 (369)
.+-+.+.+..++.|++++.++.+..+..+++...+. ..++.++.++.||.|.|.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 444577788889999999999999988776655443 334468999999999996
No 109
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.92 E-value=1.8e-08 Score=95.15 Aligned_cols=54 Identities=15% Similarity=-0.113 Sum_probs=41.1
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCC-CCC-eEEEcCCCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGS-DTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
.+...+.+.+++.|++++.+++|..++.. ++. ..+++.+| ++.++.||+|+|-.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 55666778889999999999999998643 343 34666667 69999988887754
No 110
>PRK06847 hypothetical protein; Provisional
Probab=98.92 E-value=8.4e-09 Score=96.30 Aligned_cols=58 Identities=21% Similarity=0.070 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
++.+.+.+.+++.|++++.++++..++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 6677888888888999999999999877666677888889899999999999987544
No 111
>PRK10015 oxidoreductase; Provisional
Probab=98.91 E-value=1.6e-08 Score=95.69 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.+-+.+.+.+++.|++++.++.|+.+..+++.+.....++.++.+|.||.|+|.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCc
Confidence 444556677778899999999998876555444333344568999999999996
No 112
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.91 E-value=1.6e-08 Score=96.61 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=44.4
Q ss_pred chHHHHHHHHHh----CC--cEEEeCceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLIS----KK--VDVKLGQRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~----~g--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
.+...+.+.+++ .| ++++++++|+.++.+ ++...|.+.+| ++.+|.||+|+|..
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY 272 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh
Confidence 677888888888 77 889999999999876 34456777777 79999999999975
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.91 E-value=1.2e-08 Score=95.86 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=49.2
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+++.|++++.+++|++++.+++.+.+++++|+++.+|.||.|.|....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 667778888888999999999999988776777788888889999999999999764
No 114
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.89 E-value=3.9e-08 Score=92.51 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
++.+.+.+.+.+. +++++.++.+..++.+++.+.+++.+|+++.+|.||.|.|....
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 4566777777666 49999999999988766677888888889999999999998643
No 115
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.83 E-value=3.1e-08 Score=92.75 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=48.3
Q ss_pred chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcC-CCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTS-TGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~i~~d~vi~a~G~~ 234 (369)
++.+.+.+.+.+.+ |+++.++.|+.++.+++.+.++++ +|+++.||++|-|-|..
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 67788888887766 999999999999888777778888 99999999999999974
No 116
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.82 E-value=3.8e-08 Score=91.93 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+...+.+.+.+.|++++.+++|+.++.+++.+.+.+.+| ++.+|.||+|+|..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence 35666777778889999999999999887666677777777 79999999999975
No 117
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.82 E-value=1.4e-07 Score=90.52 Aligned_cols=65 Identities=9% Similarity=-0.085 Sum_probs=48.5
Q ss_pred EEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 166 LVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 166 lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
++.+....+ .+..+...+.+.+++.|++|+.++.|..++. ++...+++.+| ++.+|.||+|+|..
T Consensus 172 ~~~~~~g~i--~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 172 FYSPVAASV--QPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred EEeCCCeEE--CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 454444322 2346778888889999999999999998864 34456777777 69999999999853
No 118
>PLN02463 lycopene beta cyclase
Probab=98.80 E-value=8.3e-08 Score=90.82 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=45.2
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
++.+.+.+.+.+.|++++ ..+|.+++.+++...|++++|+++++|.||.|+|..+
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 566777777888899997 4688888776667778888998999999999999764
No 119
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.80 E-value=5.2e-08 Score=91.53 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+++. |++++.++++..++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 4556677777666 99999999999887666667778888889999999999998653
No 120
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.80 E-value=6.1e-08 Score=91.02 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCeEEEEEcCcccccc--CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 161 EKKVTLVHKGSRLLEF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 161 ~~~v~lv~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
+.+++... ..+++|. ...++.+.+.+.+++.|+++++++.|.+++.+++.+.+++ +++++.+|.||+|+|..
T Consensus 86 Gv~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 86 GLELKVEE-DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred CCeeEEec-CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence 66666543 2344442 3357888899999999999999999999876555556665 45689999999999974
No 121
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.79 E-value=2.6e-08 Score=93.92 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=49.2
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+++.|++++.+++|+.++.+++.+.+++++|+++.+|.||.|.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 677788888888899999999999987766777788888889999999999998654
No 122
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.79 E-value=9.2e-08 Score=90.43 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=43.0
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-----cEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-----DTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~d~vi~a~G~~ 234 (369)
.+...+.+.+++.|++++.+++|.+++.+++.+.+.+.++ .++++|.||+|+|..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 5667778888999999999999999876555555543332 379999999999975
No 123
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.79 E-value=7.1e-08 Score=90.51 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=46.0
Q ss_pred chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++.| ++++ ++.+.+++.+++.+.+++.+|+++.+|.+|.|.|...
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 56777878888887 9999 8889888766667778888888899999999999864
No 124
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.79 E-value=4.6e-08 Score=92.62 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=43.2
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCC-C--cEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTST-G--DTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+.+. +|+++.++++++++.+++.+.+++.+ + .++++|+||.|.|....
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 3556676767664 79999999999987766666677653 2 36999999999997643
No 125
>PRK07190 hypothetical protein; Provisional
Probab=98.79 E-value=4.7e-08 Score=93.94 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=46.8
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++.|++++.+++|+.++.+++.+.+.+.+|+++.++.||.|.|.+.
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 45566677788889999999999999877777777777888999999999999864
No 126
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.78 E-value=5.7e-08 Score=91.68 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=48.0
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+++.|++++.++++.+++.+++.+.+++.+|+++.+|.+|.|.|....
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 456677777888899999999999988776777788888889999999999998643
No 127
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.78 E-value=7.3e-08 Score=84.27 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=106.6
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc--cccccccccCCcccccceecc-----ccccccceEEEe
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI--TWASLRAMVEPSFGERSVINH-----TDYLVNGRIVAS 82 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 82 (369)
.+..+++|||||.-|+++|++|+ +|.+++|+|+-+.... ........+++.+.+..+... ..|..
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~------- 77 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN------- 77 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh-------
Confidence 45789999999999999999997 5899999999764321 111122223333332221111 11110
Q ss_pred eeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCC-
Q 046865 83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE- 161 (369)
Q Consensus 83 ~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~- 161 (369)
.....|..+++....+-.|.. +...+.+............+++ ...++.+++|+
T Consensus 78 ---------~~~~~g~~~~~~t~~~~~~~~------e~~~~~sv~~~~k~~~l~h~~l----------~seEvrk~fP~~ 132 (399)
T KOG2820|consen 78 ---------LPEESGVKLHCGTGLLISGDP------ERQRLDSVAANLKRKGLAHSVL----------ISEEVRKRFPSN 132 (399)
T ss_pred ---------ChhhhceeecccceeeecCcH------HHHHHHHHHHHHhhhhhhhhhh----------hHHHHHHhCCCC
Confidence 001123333333333322221 1122333332222222222222 24456666663
Q ss_pred -----CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC---CCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 162 -----KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 162 -----~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
..+.++.....+. ......+.++..+++.|+.++.++.+..++. ++..+.|.+++|..+.++.+|+++|.
T Consensus 133 ~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 133 IPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred ccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 1223332222211 1235667888999999999999999887652 34467888999988999999999997
Q ss_pred CC
Q 046865 234 PV 235 (369)
Q Consensus 234 ~p 235 (369)
.-
T Consensus 211 Wi 212 (399)
T KOG2820|consen 211 WI 212 (399)
T ss_pred HH
Confidence 63
No 128
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.78 E-value=3.4e-07 Score=87.60 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe---EEEcC-CCc-----EEeccEEEEcCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD---TYLTS-TGD-----TIKADCHFLCTGKPV 235 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~---~v~~~-~g~-----~i~~d~vi~a~G~~p 235 (369)
+.+...+.+.|+++||+|+++++|+++..+ ++.. .+... +|+ ..+.|.||+++|.-.
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 588999999999999999999999998764 2212 22232 232 356899999999743
No 129
>PRK09897 hypothetical protein; Provisional
Probab=98.77 E-value=5.3e-08 Score=93.67 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=30.6
Q ss_pred cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE 48 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~ 48 (369)
+++|+|||||++|+++|.+|.+ ..+|+|||++..+|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 3689999999999999999853 46999999987654
No 130
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.76 E-value=9.8e-08 Score=88.78 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+...+.+.+.+. |++++.+++|..++.. .+.+.+| ++.+|.||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCC
Confidence 46667777777765 9999999999988632 5677767 57899999999975
No 131
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.75 E-value=3.5e-08 Score=96.49 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=68.9
Q ss_pred hcCCeEEEEcCChhHHHHHHH-------HhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865 134 KSARSILIVGGGPTGVELAGE-------IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~-------l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 206 (369)
..++.++++|++++++|++.. +. ..+.+|++....+..+..+...+...+.+.+++.|+++++++++.++.
T Consensus 158 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 158 KVPLNMVVMQQDYVWLNLLKRHPRGVLRAL--KVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccHHHHHHHHhhhcCchhHHHHH--HHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 346778899999999998764 22 124566655544444445566788888999999999999999999887
Q ss_pred CCCCCe-EEEc-CCCc--EEecc-EEEEcCC-CCCCc
Q 046865 207 VSEGSD-TYLT-STGD--TIKAD-CHFLCTG-KPVGS 237 (369)
Q Consensus 207 ~~~~~~-~v~~-~~g~--~i~~d-~vi~a~G-~~p~~ 237 (369)
.+++.+ .+.. .+++ .+.++ .||+||| +.+|.
T Consensus 236 ~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~ 272 (557)
T PRK07843 236 VEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNE 272 (557)
T ss_pred EeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCH
Confidence 654432 2322 2443 47785 5888665 44443
No 132
>PRK08013 oxidoreductase; Provisional
Probab=98.75 E-value=1.2e-07 Score=89.34 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++. |++++.++++..++.+++.+.+++.+|+++++|+||-|-|...
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 4556677777664 8999999999998776677788888999999999999999764
No 133
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.74 E-value=1e-07 Score=89.49 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+.+.+ +. +.+++|..++.+++.+.+++++|+++++|.||.|.|...
T Consensus 112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 45667777777664 66 889999998777777788888888999999999999864
No 134
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.73 E-value=1.9e-07 Score=89.67 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHhCC-cEEEeCceeeeccCCCC-CeEEEc---CCCc--EEeccEEEEcCCCCCCchhhccc
Q 046865 179 PKAGDKTLDWLISKK-VDVKLGQRVNLDSVSEG-SDTYLT---STGD--TIKADCHFLCTGKPVGSDWLKDT 243 (369)
Q Consensus 179 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~-~~~v~~---~~g~--~i~~d~vi~a~G~~p~~~~l~~~ 243 (369)
..+.+.+.+.+++.| ++++++++|+.++.+++ .+.+.+ .+|+ ++.++.||+|+|... ..++...
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~ 253 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKS 253 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHc
Confidence 467888888888876 99999999999876444 344543 3353 699999999999863 4444333
No 135
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.72 E-value=3.4e-07 Score=88.36 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=39.6
Q ss_pred EeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 256 MVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 256 ~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
.+++.|+++..+|+|++|++++... -..|..||.+|+.|++..+.|++
T Consensus 347 ~l~~~le~k~~~gLf~AGqi~Gt~G---y~eAaa~Gl~Ag~naa~~~~~~~ 394 (617)
T TIGR00136 347 QLKPTLETKLIQGLFFAGQINGTTG---YEEAAAQGLMAGINAALKLQNKE 394 (617)
T ss_pred hCchhheeCCCCCeEEccccCCcch---HHHHHHHHHHHHHHHHHHhcCCC
Confidence 3557899977999999999998543 24788999999999999888765
No 136
>PRK07588 hypothetical protein; Provisional
Probab=98.71 E-value=2.2e-07 Score=87.32 Aligned_cols=56 Identities=7% Similarity=-0.044 Sum_probs=44.6
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+. .+++++.+++|.+++.+++.+.+++++|+++++|.||-|.|....
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 34455555443 479999999999998777777888899999999999999997543
No 137
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.71 E-value=2.9e-07 Score=83.95 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=58.1
Q ss_pred CccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865 170 GSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLK 241 (369)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~ 241 (369)
.+++....-+.+.+.+++.+++.|+++++++.|.+++..++ ...+.+++|+++++|.||+|+|+.. .+|+.
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~~ 235 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RDWFE 235 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HHHHH
Confidence 34454455678999999999999999999999999887666 4577889999999999999999974 45543
No 138
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.70 E-value=2.2e-07 Score=81.07 Aligned_cols=152 Identities=16% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCc--EEec
Q 046865 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGD--TIKA 224 (369)
Q Consensus 148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~--~i~~ 224 (369)
..++-..|.+. .+..+..+--.|.-+ ..-++.+.+.+.+++.|.-+..+-+|...+..++.+ .+-+.++. .+.+
T Consensus 230 ~~~~~~aL~~~-~~~~l~elPtlPPSl--lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a 306 (421)
T COG3075 230 NDELWDALNDV-LGLALFELPTLPPSL--LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRA 306 (421)
T ss_pred cHHHHHHHHHH-hCCceeecCCCCcch--hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCCh
Confidence 34444555542 456665553222111 223788999999999999999999998877666544 34455554 5679
Q ss_pred cEEEEcCCCCCCch------hhcccc--cCCCCCC-----------------CCcEEeCCceeecc----CCCeEEeccc
Q 046865 225 DCHFLCTGKPVGSD------WLKDTI--LKDSLDT-----------------DGMLMVDENLRVKG----QKNIFAIGDI 275 (369)
Q Consensus 225 d~vi~a~G~~p~~~------~l~~~~--~~~~~~~-----------------~g~i~vd~~l~~~~----~~~i~a~GD~ 275 (369)
|..++|+|.-.+.. .+.+.- +++.-++ .=.+.+|+++|... ..|+||+|.+
T Consensus 307 ~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGav 386 (421)
T COG3075 307 DFYVLASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAV 386 (421)
T ss_pred hHeeeeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHH
Confidence 99999999633211 111100 0110000 11266777777632 5799999999
Q ss_pred CCccccch----hHHHHHHHHHHHHHHHHHh
Q 046865 276 TDIREIKQ----GFLAQKHAQVAAKNLKVLM 302 (369)
Q Consensus 276 ~~~~~~~~----~~~A~~~g~~~a~~i~~~~ 302 (369)
.+...+-. +-.|.-.|..+|+.|+...
T Consensus 387 lgGfdpi~egcGsGVaivta~~aa~qi~~~~ 417 (421)
T COG3075 387 LGGFDPIAEGCGSGVAIVTALHAAEQIAERA 417 (421)
T ss_pred hcCCcHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 88765411 1356777888888887554
No 139
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.69 E-value=3.7e-07 Score=86.53 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+...+.+.+++.|++|+++++|+.++.+++.+ .+++.++ ++.+|.||+|+|...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 667778888899999999999999987655543 3555544 799999999999753
No 140
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.69 E-value=1.6e-07 Score=89.54 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHh-CCcEEEeCceeeeccCC-CCCeEEE---cCCCc--EEeccEEEEcCCCCCCchhhcccc
Q 046865 179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVS-EGSDTYL---TSTGD--TIKADCHFLCTGKPVGSDWLKDTI 244 (369)
Q Consensus 179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~ 244 (369)
..+.+.+.+.+.+ .|+++++++.|..++.+ ++...+. +.+++ ++++|.||+|+|... ..++...+
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~G 255 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSG 255 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcC
Confidence 3667777777754 58999999999998755 4455554 34443 689999999999874 44444433
No 141
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.68 E-value=2.2e-07 Score=89.10 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeEEEc---CCC--cEEeccEEEEcCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDTYLT---STG--DTIKADCHFLCTGKPV 235 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~v~~---~~g--~~i~~d~vi~a~G~~p 235 (369)
..+...+.+.++++|++++++++|+.++.++ +.+.+.+ .+| .++.+|.||+|+|...
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 4788888889999999999999999987644 3344442 334 2689999999999763
No 142
>PRK09126 hypothetical protein; Provisional
Probab=98.68 E-value=4.8e-07 Score=85.02 Aligned_cols=57 Identities=9% Similarity=0.122 Sum_probs=45.1
Q ss_pred hHHHHHHHH-HhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 181 AGDKTLDWL-ISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 181 ~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
+.+.+.+.+ +..|++++.+++++.++.+++.+.+++++|+++++|.||.|.|.....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 444555554 456999999999999877666677888888899999999999987543
No 143
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.67 E-value=2.2e-07 Score=89.48 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.+++.|++|+++++|++|..+++ .+++.+.+|+.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 37889999999999999999999999988765 46777777778999999998876
No 144
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.67 E-value=1.3e-07 Score=90.35 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=74.8
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------cccC----Cc---chHHHHHHHHHhCCcEEEeCceee
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEFI----GP---KAGDKTLDWLISKKVDVKLGQRVN 203 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------l~~~----~~---~~~~~~~~~l~~~gv~i~~~~~v~ 203 (369)
++++|||+|+.|+.+|..|++..++.+|+++++++.+ ++.+ .+ ++.....+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 3799999999999999999865456799999998753 1111 11 122233466788899999999999
Q ss_pred eccCCCCCeEEEc-CCCcEEe--ccEEEEcCCCCCCch
Q 046865 204 LDSVSEGSDTYLT-STGDTIK--ADCHFLCTGKPVGSD 238 (369)
Q Consensus 204 ~i~~~~~~~~v~~-~~g~~i~--~d~vi~a~G~~p~~~ 238 (369)
.++.+++.+.+.. .++++++ +|.+|+|||.+|+.+
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 8876665555543 2355666 999999999998654
No 145
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.67 E-value=9.6e-09 Score=100.92 Aligned_cols=99 Identities=16% Similarity=0.068 Sum_probs=60.6
Q ss_pred cCCeEEEEcCChhH-HHHHHHHhhhCCCCeEEEEEcCccccc--------------cCCcchHHHHHHHHHhCCcEEEeC
Q 046865 135 SARSILIVGGGPTG-VELAGEIAVDFPEKKVTLVHKGSRLLE--------------FIGPKAGDKTLDWLISKKVDVKLG 199 (369)
Q Consensus 135 ~~~~v~vvG~G~~g-~e~a~~l~~~~~~~~v~lv~~~~~~l~--------------~~~~~~~~~~~~~l~~~gv~i~~~ 199 (369)
.+.++.++|+++++ .+++..+.. .+....+..+..+++. .....+...+.+.+++.|++++++
T Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~ 237 (581)
T PRK06134 160 PLRETSFMGMPIMAGADLAAFLNP--TRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWES 237 (581)
T ss_pred ccccccccccccccHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcC
Confidence 44566678877665 666665432 1333333222222111 112356788888999999999999
Q ss_pred ceeeeccCCCCCe---EEEcCCCc-EEec-cEEEEcCCCCC
Q 046865 200 QRVNLDSVSEGSD---TYLTSTGD-TIKA-DCHFLCTGKPV 235 (369)
Q Consensus 200 ~~v~~i~~~~~~~---~v~~~~g~-~i~~-d~vi~a~G~~p 235 (369)
++++++..+++.+ .+...++. ++.+ +.||+|+|-..
T Consensus 238 t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 238 APARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred CEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 9999876554432 22323343 5788 99999998643
No 146
>PRK06996 hypothetical protein; Provisional
Probab=98.66 E-value=1.6e-07 Score=88.39 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=45.8
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC---cEEeccEEEEcCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG---DTIKADCHFLCTGK 233 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~d~vi~a~G~ 233 (369)
.+.+.+.+.+++.|++++.++++..++.+++.+.+.+.++ +++.+|+||-|.|.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 6778888889889999999999998877667777777654 58999999999995
No 147
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.66 E-value=1.7e-07 Score=87.77 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=45.5
Q ss_pred hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
+...+.+.+++ .+++++.++++++++.+++.+.+++++|+++++|+||.|.|.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 34455555544 4799999999999987777788889999999999999999987543
No 148
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.65 E-value=2.1e-07 Score=90.09 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc--EEeccEEEEcCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD--TIKADCHFLCTGKPV 235 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~d~vi~a~G~~p 235 (369)
..+...+.+.+++.|++++.+++|..+..+++.+.+++.+ |+ ++.++.||.|+|...
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4566677777888999999999999887655545555432 43 689999999999753
No 149
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.65 E-value=1.7e-07 Score=91.41 Aligned_cols=56 Identities=11% Similarity=-0.117 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc---CCC--cEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT---STG--DTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~i~~d~vi~a~G~~ 234 (369)
..+...+.+.++++|++++++++|+.+..+++.+ .+++ .++ .++.++.||.|+|..
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 4677777788889999999999999987665533 2333 233 379999999999975
No 150
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.65 E-value=4.2e-07 Score=87.03 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=34.0
Q ss_pred EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
+|+++++|++|+.+++.+.+++.+|+++.+|.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 899999999998777777778888889999999999763
No 151
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.65 E-value=2.4e-07 Score=86.70 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=47.5
Q ss_pred chHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
++.+.+.+.+.+ .|++++.++++++++.+++.+.+++++|+++.+|.||.|.|...
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 567788888877 49999999999998766667778888888999999999999763
No 152
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.65 E-value=2.6e-07 Score=86.86 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=73.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccCCcchH---------HHHHHHHHhCCcEEEeCceee
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIGPKAG---------DKTLDWLISKKVDVKLGQRVN 203 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~ 203 (369)
.++++|||||+.|+.+|..|++..+..+|+++++.+... +.+.+.+. ..-.+.+.+.+|+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 468999999999999999998765567899998765321 11111110 001345677899999999998
Q ss_pred eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
.+..++ ..+.+++|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 876543 45667788899999999999998853
No 153
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.65 E-value=6.5e-07 Score=84.49 Aligned_cols=58 Identities=9% Similarity=-0.146 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.++.+.+.+.++..|.+++++++|.+|..+++ ...+++++|+++.++.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 36888888888999999999999999976543 25678889999999999998888765
No 154
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.64 E-value=4e-07 Score=85.29 Aligned_cols=56 Identities=13% Similarity=0.000 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++.+ ++++.+++|+.++.+++.+.+++++|+++.+|.||.|.|...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 56677888888887 999999999998877777778888998999999999999864
No 155
>PRK07233 hypothetical protein; Provisional
Probab=98.63 E-value=7.2e-08 Score=91.84 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.+++.|++|+++++|.+++.+++.+.+...+++++++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 3678888888999999999999999998766655544566778999999999875
No 156
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.62 E-value=1.1e-07 Score=95.30 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
..+...+.+.+++ |++++.++.|+.++.+++.+.+.+.+|..+.+|.||+|+|...
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 4778888888888 9999999999988766666777777787788999999999864
No 157
>PRK05868 hypothetical protein; Validated
Probab=98.62 E-value=2.8e-07 Score=85.85 Aligned_cols=46 Identities=9% Similarity=-0.040 Sum_probs=39.9
Q ss_pred hCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 191 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
..|++++++++++.++.+++.+.+++++|+++++|+||-|-|.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 4689999999999987666778888999999999999999997643
No 158
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.61 E-value=5.7e-07 Score=88.01 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=43.5
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcC--CC--cEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTS--TG--DTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~d~vi~a~G~~ 234 (369)
.+.+.+.+.+.+. |++++.+++++.++.+++.+++++. +| +++++|+||-|.|..
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~ 173 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGAN 173 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCc
Confidence 4556677777664 9999999999999877777777664 56 479999999999974
No 159
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.61 E-value=4.4e-07 Score=83.13 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=39.4
Q ss_pred CCcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcccccccccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA 56 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~ 56 (369)
....||||||+|.+||++|+.|++ |++|+|+|.++.+|......+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 456899999999999999999986 9999999999999876554443
No 160
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.60 E-value=5.5e-08 Score=89.81 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC---CCc--EEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS---TGD--TIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++.|++++.++++..++.+++.+.+.+. +|+ ++++|+||-|-|...
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 56778888888889999999999988766665544432 342 689999999999864
No 161
>PRK06184 hypothetical protein; Provisional
Probab=98.60 E-value=2.1e-07 Score=90.32 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc---CCCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT---STGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~d~vi~a~G~~ 234 (369)
.+.+.+.+.+++.|++++.++++..++.+++.+++++ .+++++.+|.||.|.|..
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~ 167 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGR 167 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCc
Confidence 4556777888888999999999999987766676665 556789999999999974
No 162
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.59 E-value=2e-07 Score=79.03 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=66.0
Q ss_pred EEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccccc--------------c-C--------------------------
Q 046865 140 LIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLE--------------F-I-------------------------- 177 (369)
Q Consensus 140 ~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~--------------~-~-------------------------- 177 (369)
+|||+|+.|+-+|..|.+. +.+ ++++++.+.+.. . +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 6999999999999999864 777 999998743310 0 0
Q ss_pred --CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 178 --GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 178 --~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.+++.+++++..++.+++++++++|++++.+++...+++.+++++.+|.||+|||.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 01344677888888999999999999999888788899998888999999999997
No 163
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.59 E-value=8.3e-08 Score=87.82 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865 258 DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE 305 (369)
Q Consensus 258 d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~ 305 (369)
+..|+++..||+|++|+.++... -..|..||-+|+.|+++.++|+
T Consensus 347 ~~~l~~k~~~~lf~AGqi~G~~G---y~eaaa~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 347 LNTLETKKIPGLFFAGQINGTEG---YEEAAAQGLIAGINAARRLQGK 391 (392)
T ss_dssp BTTSBBSSSBTEEE-GGGGTB-S---HHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccceEECCCCCceECCCCcchhH---HHHHHHHHHHHHHHHHHHHcCC
Confidence 34688888999999999998743 2478889999999999988775
No 164
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.59 E-value=5.1e-07 Score=86.77 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G 232 (369)
.+.+.+.+.+.+ ++|+++++|+.|+.+++.+.+.+.+|+++.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 455555555543 689999999999877777778778888899999999985
No 165
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.59 E-value=3.8e-07 Score=88.29 Aligned_cols=57 Identities=11% Similarity=-0.082 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC----cEEeccEEEEcCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG----DTIKADCHFLCTGKP 234 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~i~~d~vi~a~G~~ 234 (369)
+..+...+.+.+++.|++++.+++|..+..+++...+++.++ .++.++.||.|+|..
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence 346667777788899999999999998876655555655443 258999999999975
No 166
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.59 E-value=3.7e-07 Score=88.42 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEcCCC--cEEeccEEEEcCC-CCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLTSTG--DTIKADCHFLCTG-KPVG 236 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g--~~i~~d~vi~a~G-~~p~ 236 (369)
..+...+.+.+++.|+++++++.+.++..+++. +.+...++ .++.++.||+|+| +..|
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 356778888899999999999999998765443 23333443 3688999999998 5544
No 167
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.58 E-value=4e-07 Score=93.96 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred CCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865 252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~ 303 (369)
.|+|.||.+++| +.|++||+|||++.+. .+...|.-.|+.++.++...+.
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHHh
Confidence 478999999998 6999999999976532 3445677889999999877654
No 168
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.58 E-value=4.5e-07 Score=88.05 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=80.3
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--cccc-----------c-cCCcchHHHHHHHHHhCCcEEEeC
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--SRLL-----------E-FIGPKAGDKTLDWLISKKVDVKLG 199 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--~~~l-----------~-~~~~~~~~~~~~~l~~~gv~i~~~ 199 (369)
....+++|||||+.|+.+|..+++ .|.+|+++... ..+. + ...+++.+.+.+.+++.|++++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 345789999999999999999984 59999999642 1111 0 123467778888888999999999
Q ss_pred ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
++|..+..+++...+.+.+|+++.+|.+|+|+|.+|..
T Consensus 288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 99998876555667777888899999999999998743
No 169
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.57 E-value=6e-07 Score=84.45 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=44.2
Q ss_pred hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+.+.+.+.+.+ .|++++.+++++++..+++.+.+++++|.++.+|.||.|.|...
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 44566666655 58999999999988766667778888888899999999999864
No 170
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.57 E-value=6.8e-07 Score=83.86 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=42.4
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+.+.|++++. ..+..++.+ ++...+++.+|++++++.||.|+|..+
T Consensus 86 ~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 5667777888888999874 467766655 445667777888999999999999765
No 171
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.57 E-value=1.8e-06 Score=83.90 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+.+.+.+.+++.|++|++++.|.++..+++. +.|++.+|+++.+|.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 367888899999999999999999998766543 56778888899999999998863
No 172
>PRK08244 hypothetical protein; Provisional
Probab=98.56 E-value=3.2e-07 Score=88.80 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=44.5
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC--CC-cEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS--TG-DTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++.|++++.++++..++.+++.+.+++. +| +++++|.||.|.|...
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 45667777888889999999999998776666666543 45 4799999999999864
No 173
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.55 E-value=8.9e-07 Score=82.47 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+...+ .++.++.|..++..++...+++++|+++.++.||-|.|..+.
T Consensus 88 ~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 88 DFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 56667777777444 567788999998776667788899999999999999996543
No 174
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.54 E-value=3.4e-06 Score=78.62 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 258 DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 258 d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
++.|+++..||+|.+|-+++... =..|..||-+|+-|++..+.|++
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~~G---Y~Eaaa~Gl~agina~~~~~~~~ 366 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGVEG---YVASTAGGWLAGINAARLALGEP 366 (433)
T ss_pred hHHhccCCCCCEEECcccccchH---HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44688888999999999997643 24688999999999999998875
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.54 E-value=6.2e-07 Score=87.17 Aligned_cols=100 Identities=24% Similarity=0.266 Sum_probs=80.0
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--ccc--------cc----cCCcchHHHHHHHHHhCCcEEEeCce
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--SRL--------LE----FIGPKAGDKTLDWLISKKVDVKLGQR 201 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--~~~--------l~----~~~~~~~~~~~~~l~~~gv~i~~~~~ 201 (369)
..+++|||||+.|+.+|..+++ .|.+++++.+. .++ ++ ...+++.+.+.+.+++.|++++.+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~ 288 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR 288 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence 4589999999999999999984 48999999753 111 01 12346778888999999999999999
Q ss_pred eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
+..+...++...+.+.+|+++.+|.+|+|+|.+|..
T Consensus 289 V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 289 ASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998877656667777888899999999999997743
No 176
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.53 E-value=1.3e-06 Score=83.88 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 182 GDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 182 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.+.+.+.+. ..+|+++++|+.|+.+++.+.+++++|+++.+|.||+|+..
T Consensus 228 ~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 228 PEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred HHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence 344444443 27899999999998777777788888888999999999874
No 177
>PLN02268 probable polyamine oxidase
Probab=98.52 E-value=4.2e-07 Score=86.60 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.+.+.|. .+++|+++++|+.++..++.+.|++.+|+++.+|.||+|+..
T Consensus 202 ~l~~~l~-~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 202 PVINTLA-KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHHh-ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 3444443 367899999999998777778888888888999999999754
No 178
>PRK07045 putative monooxygenase; Reviewed
Probab=98.52 E-value=9e-07 Score=83.03 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=43.8
Q ss_pred chHHHHHHHHH-hCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLI-SKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
++.+.+.+.+. ..|++++.+++++.++.+++. +.+++++|+++.+|+||-|.|...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 45566666664 458999999999988765443 357788889999999999999864
No 179
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.52 E-value=1.4e-06 Score=81.33 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=46.0
Q ss_pred chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
++.+.+.+.+++.+ ++++.++++.++..+++.+.+.++++ ++.+|+||-|-|....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 66778888777764 99999999999876666777888776 8999999999998643
No 180
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.51 E-value=1.3e-06 Score=82.39 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=44.4
Q ss_pred hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+.+.+.+.+.+ .|++++.+++++.++.+++.+.+++++|+++++|+||.|.|...
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 44456666655 47999999999998776667788888999999999999999754
No 181
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.50 E-value=9.6e-07 Score=84.10 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=72.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------ccCC----cchHHHH----HHHHHhCCcEEEeCcee
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFIG----PKAGDKT----LDWLISKKVDVKLGQRV 202 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~~~~----~~~~~~~----~~~l~~~gv~i~~~~~v 202 (369)
++|+|||||+.|+.+|..|++..++.+|+++++.+.+. +..- +...+.+ .+..++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 47999999999999999998766688999999986431 1110 0011111 23335679999999999
Q ss_pred eeccCCCCCeEEEcCC-Cc--EEeccEEEEcCCCCCCch
Q 046865 203 NLDSVSEGSDTYLTST-GD--TIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 203 ~~i~~~~~~~~v~~~~-g~--~i~~d~vi~a~G~~p~~~ 238 (369)
..++.+++.+.+...+ ++ ++++|.+|+|||.+|+.+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 9998766555554332 22 468999999999998643
No 182
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.50 E-value=5.1e-07 Score=83.98 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=73.5
Q ss_pred eEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCcccc-----ccC------CcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 138 SILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLL-----EFI------GPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~~l-----~~~------~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
+++|||||+.|+.+|..+.++ .++.+|+++++.+... +.+ ..++...+.+.+++.||+++.+ .|..+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999988543 3578999999876531 111 1123334566777889999886 67777
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchh
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW 239 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~ 239 (369)
+.+++ .|.+.+|+++++|.+|+|||.+|+.+.
T Consensus 80 d~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence 65443 577788888999999999999887543
No 183
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.50 E-value=3.1e-06 Score=81.40 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc--CCC--cEEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT--STG--DTIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~~i~~d~vi~a~G~ 233 (369)
..+...+.+.+++.|+++++++++.++..+++.+ .+.. .++ ..+.++.||+|+|-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 4577788888899999999999999887655433 2333 233 36889999999984
No 184
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.49 E-value=2.9e-06 Score=79.98 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=43.3
Q ss_pred chHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEc---CCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLT---STGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~d~vi~a~G~~p 235 (369)
++.+.+.+.+.+ .+++++.+++++.++.+++.+.+++ .+++++++|+||-|-|...
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 566777777765 4899999999999887666666665 3345799999999999853
No 185
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.47 E-value=6.5e-07 Score=83.93 Aligned_cols=55 Identities=18% Similarity=-0.033 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+...+.+.+++.| ..+..++.+..++.+.....+.+.+|+ +.+|.||+|+|..
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAW 211 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchH
Confidence 477888889999999 556668888877653234567777775 9999999999965
No 186
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.47 E-value=5.1e-07 Score=85.66 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=33.3
Q ss_pred CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE 48 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~ 48 (369)
..+||||||+|.||++||.+++.|.+|+||||.+..+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~g 39 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNE 39 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCC
Confidence 4589999999999999999988899999999987654
No 187
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.47 E-value=1.6e-06 Score=82.78 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CC---eEEEcCCCc--EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GS---DTYLTSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~---~~v~~~~g~--~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.+++.|++++++++++++..++ +. +.+...+++ .+.++.||+|+|-
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 4678888899999999999999999987643 32 223334443 4789999999994
No 188
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.46 E-value=1.2e-06 Score=81.88 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=72.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccC--------C-cchHH-HHHHHHHhCCcEEEeCceee
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFI--------G-PKAGD-KTLDWLISKKVDVKLGQRVN 203 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~--------~-~~~~~-~~~~~l~~~gv~i~~~~~v~ 203 (369)
++++|||+|+.|+.+|..|.+..++.+|+++.+.+... +.+ . .++.. ...+.+++.|++++.++.|.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 57999999999999999998766778999999876421 111 0 11111 13355677899999999998
Q ss_pred eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.++.++. .+.+ +++++++|.+|+|||.+|..+
T Consensus 83 ~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 83 DIDAEAQ--VVKS-QGNQWQYDKLVLATGASAFVP 114 (377)
T ss_pred EEECCCC--EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence 8875443 3444 566899999999999988643
No 189
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.45 E-value=1.3e-06 Score=82.04 Aligned_cols=56 Identities=7% Similarity=-0.000 Sum_probs=40.8
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccC-CCCCeEEEc-CCCc--EEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSV-SEGSDTYLT-STGD--TIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+...+.|++++.++++.+++. +++...+++ .+|+ ++++|+||-|-|...
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC
Confidence 3445566666778999999999988765 444555665 4664 689999999999753
No 190
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.44 E-value=2e-06 Score=81.95 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=45.0
Q ss_pred chHHHHHHHHHhCC---cEEEeCceeeeccC-------CCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKK---VDVKLGQRVNLDSV-------SEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~g---v~i~~~~~v~~i~~-------~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+++.+ ++++.++++.+++. +++.+++++.+|+++.+|++|-|-|....
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 45566777777664 99999999998863 23467888889999999999999998643
No 191
>PRK06185 hypothetical protein; Provisional
Probab=98.44 E-value=3.5e-06 Score=79.57 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=41.1
Q ss_pred chHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe---EEEcCCCc-EEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD---TYLTSTGD-TIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+++ .|++++.++.+.++..+++.+ .+...+|+ ++.+|.||.|.|...
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 455666666655 489999999999887655533 34445664 799999999999863
No 192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.44 E-value=5e-07 Score=87.34 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=36.3
Q ss_pred eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865 257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 257 vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~ 303 (369)
.+..|+++..+|+|.+|-+++... =..|..||-+|+-|.+..+.
T Consensus 350 L~~~Le~k~~~~lf~AGQinGt~G---YeEaaaqGl~AgiNaa~~~~ 393 (618)
T PRK05192 350 LKPTLETKKIKGLFFAGQINGTTG---YEEAAAQGLIAGINAALKVQ 393 (618)
T ss_pred cchhheecCCCCeEECcccCCChH---HHHHHHHHHHHHHHHHHHhc
Confidence 456789988999999999997743 24788999999999998776
No 193
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.42 E-value=1.2e-06 Score=89.22 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=75.2
Q ss_pred CeEEEEcCChhHHHHHHHHhhhC--CCCeEEEEEcCcccc------c-cCC----cchHHHHHHHHHhCCcEEEeCceee
Q 046865 137 RSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLL------E-FIG----PKAGDKTLDWLISKKVDVKLGQRVN 203 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~--~~~~v~lv~~~~~~l------~-~~~----~~~~~~~~~~l~~~gv~i~~~~~v~ 203 (369)
++++|||+|+.|+.+|..|.++. .+.+|+++.+.+.+. + .+. .++.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 58999999999999999987542 357999999887642 1 111 1222223466788999999999998
Q ss_pred eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.+..+ ...|.+.+|+++++|.+|+|||.+|..+
T Consensus 84 ~Id~~--~~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 84 TINRQ--EKVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEeCC--CcEEEECCCcEEECCEEEECCCCCcCCC
Confidence 87643 3456778888999999999999988654
No 194
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.39 E-value=2.3e-06 Score=80.04 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=39.9
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.+.+.+.+.+. .+|+++++|+.+..+....++.+.+|+++.+|.||+++-.
T Consensus 216 ~l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 216 SLIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 44555555554 4499999999998876677888889999999999999653
No 195
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.39 E-value=5e-06 Score=76.93 Aligned_cols=32 Identities=38% Similarity=0.454 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~ 46 (369)
||+|||+|.|||++|..|.+.++|+|+.|++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCC
Confidence 89999999999999999998899999999864
No 196
>PLN02612 phytoene desaturase
Probab=98.39 E-value=1e-05 Score=79.47 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.+++.|++|+++++|.+|+.+++. +.+.+.+|+++++|.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 457788888898899999999999999865443 3466778889999999999853
No 197
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.37 E-value=3.6e-07 Score=62.44 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.9
Q ss_pred EECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc
Q 046865 18 VIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (369)
Q Consensus 18 IIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~ 52 (369)
|||||++||++|+.|+ .|++|+|+|+++.++..+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 8999999999999997 4899999999998875443
No 198
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.37 E-value=1.4e-06 Score=88.69 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=74.1
Q ss_pred EEEEcCChhHHHHHHHHhhhC-CCCeEEEEEcCcccc------cc-CC-----cchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 139 ILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLL------EF-IG-----PKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 139 v~vvG~G~~g~e~a~~l~~~~-~~~~v~lv~~~~~~l------~~-~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
++|||+|+.|+.+|..+.+.. .+.+|+++++.+.+. +. +. +++.....+.+++.||++++++.|..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999887543 457999999887641 11 11 112222356778899999999999988
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
+.+. ..|++.+|+++++|.+|+|||..|..+
T Consensus 81 d~~~--k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTDQ--KQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECCC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 6543 457778888999999999999988654
No 199
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.37 E-value=3.2e-06 Score=80.58 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=75.6
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------------------
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------------------------------------- 175 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------------------------------------- 175 (369)
..++|+|||+|++|+-+|..|.+ .|.+|+++++++.+..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence 35889999999999999999985 3889999998653211
Q ss_pred ------cCC---------------cchHHHHHHHHHhCCcE--EEeCceeeeccCCCCCeEEEcCCC--c--EEeccEEE
Q 046865 176 ------FIG---------------PKAGDKTLDWLISKKVD--VKLGQRVNLDSVSEGSDTYLTSTG--D--TIKADCHF 228 (369)
Q Consensus 176 ------~~~---------------~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g--~--~i~~d~vi 228 (369)
..+ .++.+++++..+..|++ |.++++|..++..++...|++.++ . +..+|.||
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence 000 24666777777788888 899999999987666666765432 2 46799999
Q ss_pred EcCC--CCCCch
Q 046865 229 LCTG--KPVGSD 238 (369)
Q Consensus 229 ~a~G--~~p~~~ 238 (369)
+|+| ..|+.+
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 456543
No 200
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.36 E-value=2.3e-06 Score=78.81 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=76.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-c----------CCcchHHHHHHHHHhCC-cEEEeCceee
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-F----------IGPKAGDKTLDWLISKK-VDVKLGQRVN 203 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~----------~~~~~~~~~~~~l~~~g-v~i~~~~~v~ 203 (369)
.+++||+|||+.|++++..|....++.+|++|++.+..+- . .+.++...+++.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 5789999999999999999986322588999999875431 1 13456667788888665 998887 466
Q ss_pred eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.|+.++ .+|++.++.++++|.+|+++|..+++.
T Consensus 82 ~ID~~~--k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDRDA--KKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEcccC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence 676544 467777777899999999999998764
No 201
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.36 E-value=3.5e-06 Score=82.72 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=42.4
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEc--CCCc-EEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLT--STGD-TIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~i~~d~vi~a~G~~p~ 236 (369)
.+.+.+.+.+++. +++++.++++.+++.+++.+.+++ .+|+ ++.+|.||.|.|....
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 4455666667664 799999999999887666555543 3454 6999999999998654
No 202
>PRK07236 hypothetical protein; Provisional
Probab=98.36 E-value=3.5e-06 Score=79.02 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=71.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCcchHHHH------------------------
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGPKAGDKT------------------------ 185 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~~~~~~~------------------------ 185 (369)
..+|+|||||+.|+.+|..|++ .|.+|+++++.+..... +.+...+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 5789999999999999999985 48999999987643221 111111111
Q ss_pred -------------------HHHHHh--CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 186 -------------------LDWLIS--KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 186 -------------------~~~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.|.+ .+++++.+++++.++.+++.+.+++++|+++.+|.||.|-|...
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 112211 13568899999998877777888889999999999999999754
No 203
>PLN02697 lycopene epsilon cyclase
Probab=98.35 E-value=2.5e-06 Score=82.29 Aligned_cols=103 Identities=24% Similarity=0.322 Sum_probs=61.7
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc---c-cc-----ccccCCccc--------------ccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW---A-SL-----RAMVEPSFG--------------ERS 66 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~---~-~~-----~~~~~~~~~--------------~~~ 66 (369)
...+||+|||||+||+++|..|+ .|++|+|||+...+..++ . .+ ...+...+. ...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 34689999999999999999986 599999999864332111 0 00 000000000 000
Q ss_pred e--eccccc---------cccceEEEeeeeeeec--c--e-EEecCCeEEeccEEEEccCCCC
Q 046865 67 V--INHTDY---------LVNGRIVASPAINITE--N--E-VLTAEGRRVVYDYLVIATGHKD 113 (369)
Q Consensus 67 ~--~~~~~~---------~~~~~~~~~~~~~~~~--~--~-v~~~~g~~~~~d~lviAtG~~~ 113 (369)
+ +....+ ..++++....+..+.. . . +.+.++.++.++.+|.|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 000000 0156777777777642 2 2 3456778899999999999864
No 204
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.33 E-value=3.6e-07 Score=75.38 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.4
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..||+||||||+||+||++|+ +|.+|+++|++-++|.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence 469999999999999999997 5999999999988763
No 205
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.32 E-value=3.7e-06 Score=79.73 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=72.1
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--ccC---------CcchHHHHHHHHHhCCcEEEeCceee
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI---------GPKAGDKTLDWLISKKVDVKLGQRVN 203 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~ 203 (369)
..++++|||||+.|+.+|..|. ..+.+|++|++.+.+. +.+ ..++...+.+.++..+++++.+ +|+
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~--~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~ 85 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLD--PKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVY 85 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhC--cCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEE
Confidence 4568999999999999998885 3467999999887542 111 1233444566677778888765 788
Q ss_pred eccCCCCCeEEEc--------CCCcEEeccEEEEcCCCCCCch
Q 046865 204 LDSVSEGSDTYLT--------STGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 204 ~i~~~~~~~~v~~--------~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.|+.+++.+.+.. .+|+++++|.+|+|||..|+..
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 8876655444421 4566899999999999987643
No 206
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.32 E-value=1.2e-06 Score=78.78 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=31.3
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
+||+|||||++|+++|+.|+ .|.+|+|||+.+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~ 36 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 69999999999999999997 599999999987543
No 207
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.32 E-value=1.9e-05 Score=77.14 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
...+||||||+|.|||+||.+++ .|.+|+||||....+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 45789999999999999999986 589999999987543
No 208
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.31 E-value=4.8e-07 Score=75.05 Aligned_cols=38 Identities=26% Similarity=0.215 Sum_probs=30.3
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||+||||||+||+||+.|+ .|++|+++|++..+|.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 4689999999999999999997 4999999999887663
No 209
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.30 E-value=3.9e-06 Score=83.13 Aligned_cols=57 Identities=12% Similarity=-0.129 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe-EEEc---CCCc--EEeccEEEEcCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD-TYLT---STGD--TIKADCHFLCTGKP 234 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~---~~g~--~i~~d~vi~a~G~~ 234 (369)
+..+...+.+.+++.|++++.++.|..+..+ ++.+ .++. .+++ ++.+|.||+|+|..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 4578888889999999999999999988654 2332 2332 2343 68999999999975
No 210
>PRK07538 hypothetical protein; Provisional
Probab=98.30 E-value=4.5e-06 Score=78.99 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=39.4
Q ss_pred chHHHHHHHHHh-CC-cEEEeCceeeeccCCCCCeEEEcCCC-----cEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLIS-KK-VDVKLGQRVNLDSVSEGSDTYLTSTG-----DTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+.+.+ .| ++++.+++++.++.+++.+.+.+.++ +++++|+||-|.|...
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 455666666644 36 57999999999876555544544332 4899999999999753
No 211
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.28 E-value=5.3e-06 Score=73.16 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=37.8
Q ss_pred CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcccccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASL 54 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~~~~~ 54 (369)
..++|.|||+|++||+||+.|++..+|||+|.+++.|.....+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcccee
Confidence 4579999999999999999999999999999999988654433
No 212
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.28 E-value=3.5e-06 Score=78.26 Aligned_cols=99 Identities=21% Similarity=0.381 Sum_probs=60.0
Q ss_pred eEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcccc--cccccc------------ccCCcccccc-----------
Q 046865 15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEIT--WASLRA------------MVEPSFGERS----------- 66 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~--~~~~~~------------~~~~~~~~~~----------- 66 (369)
||+|||||+||+++|.+|++ |++|+|+|+.+..+.. |..... .+...+..-.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 79999999999999999863 8999999998754321 111000 0000000000
Q ss_pred ----eecccccc----c--cc-eEEEeeeeeeecceEEecCCeEEeccEEEEccCCCC
Q 046865 67 ----VINHTDYL----V--NG-RIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD 113 (369)
Q Consensus 67 ----~~~~~~~~----~--~~-~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~ 113 (369)
.+...++. . +. -+...++..++.+.+.+.+|+++.+|.||-|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 00000000 0 11 122456667776667778889999999999999774
No 213
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.26 E-value=2.3e-05 Score=72.14 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=35.3
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcccc
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEIT 50 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~~~ 50 (369)
+.....+|||||||.|||+||.+|- . ..+++|+|..+.+|+.
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 3445679999999999999999875 4 5799999999998854
No 214
>PLN02487 zeta-carotene desaturase
Probab=98.25 E-value=1.3e-05 Score=78.14 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCC--CC----eEEEc---CCCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GS----DTYLT---STGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~----~~v~~---~~g~~i~~d~vi~a~G~~ 234 (369)
.+.+.+.+.++++|++|++++.|++++.++ ++ ..+++ .+++.+.+|.||+|++..
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 588899999999999999999999987652 21 23444 234578999999999864
No 215
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.24 E-value=8.6e-06 Score=73.16 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=72.9
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------------------c--
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------------------F-- 176 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------------------~-- 176 (369)
+|+|||+|+.|+-+|..|++ .+.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIP 79 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEec
Confidence 58999999999999999984 4899999998753210 0
Q ss_pred --------C-CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC-CcEEeccEEEEcCCCCC
Q 046865 177 --------I-GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-GDTIKADCHFLCTGKPV 235 (369)
Q Consensus 177 --------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~d~vi~a~G~~p 235 (369)
+ ..++.+.+.+.+++.|++++.++++..+..+++.+.+.+.+ +.++++|.||.|+|...
T Consensus 80 ~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 80 IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 0 11355667777888899999999999887666655555443 45899999999999863
No 216
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.23 E-value=1.3e-06 Score=73.84 Aligned_cols=100 Identities=28% Similarity=0.342 Sum_probs=70.2
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---cC-----------CcchH--H--HHHHHHHhCCcEEEeC
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FI-----------GPKAG--D--KTLDWLISKKVDVKLG 199 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---~~-----------~~~~~--~--~~~~~l~~~gv~i~~~ 199 (369)
+++|||||+.|+.+|..|. .++.+++++++.+.... .. ..... . .+.+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~--~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA--RPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH--HTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHh--cCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 5899999999999999998 35999999977653210 00 00111 1 3444556789999999
Q ss_pred ceeeeccCCCCC-----eEE---EcCCCcEEeccEEEEcCCCCCCchh
Q 046865 200 QRVNLDSVSEGS-----DTY---LTSTGDTIKADCHFLCTGKPVGSDW 239 (369)
Q Consensus 200 ~~v~~i~~~~~~-----~~v---~~~~g~~i~~d~vi~a~G~~p~~~~ 239 (369)
+++.++...... ..+ ...++.++.+|.+|+|+|..|+.+.
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 998888765542 122 3455678999999999998876553
No 217
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.23 E-value=1.2e-06 Score=83.39 Aligned_cols=41 Identities=37% Similarity=0.511 Sum_probs=35.2
Q ss_pred ccccCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 6 QQQSEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 6 ~~~~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
+.++..+++||+||||||||++||..|+ +|++|+|+|+...
T Consensus 32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3446677899999999999999999987 5999999998753
No 218
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.22 E-value=4.6e-06 Score=80.01 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+.+.+.+.+++.||+++.+ .+..+..+++.+ .+.. +++.+.++.||+|||-.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcC
Confidence 467888888888999999876 666665444433 2333 56689999999999963
No 219
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=1.9e-05 Score=77.80 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-E---EEcCCCc--EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-T---YLTSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~---v~~~~g~--~i~~d~vi~a~G~ 233 (369)
..+...+.+.+++.||++++++.+.++..+++.+ . +...+|+ .+.++.||+|||-
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 4677788888888999999999999876544422 1 2334554 5899999999986
No 220
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.9e-05 Score=68.20 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=71.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccc-----------ccc-----CCcchHHHHHHHHHhCCcEEEeC
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRL-----------LEF-----IGPKAGDKTLDWLISKKVDVKLG 199 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~-----------l~~-----~~~~~~~~~~~~l~~~gv~i~~~ 199 (369)
-.++|||+||.|+-.|-++.+ .+.+ +.+++....- .|. ..+++.+.+++..+..++++..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~- 80 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE- 80 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence 468999999999999998874 3666 4455443111 122 2356777788888888999988
Q ss_pred ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
..|..++..++.+.+++.+++ ++++.||+|||..+...
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 567666654446788888886 99999999999976544
No 221
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.20 E-value=2.3e-05 Score=69.03 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=33.0
Q ss_pred CcceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~~~~ 49 (369)
.+.||||||||-.|.+.|+.|+ .|.+|+++|+++.+.-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 3789999999999999999885 2799999999987653
No 222
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.19 E-value=2.5e-06 Score=81.31 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=39.9
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+.+.+..+++||+++.++ |..+..++++ ..|++.+|+++++|++|=|+|++.
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 567788888899999999986 5555443332 467888999999999999999853
No 223
>PRK06834 hypothetical protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=77.28 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=74.9
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---c--------------------------------c-----
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---E--------------------------------F----- 176 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~--------------------------------~----- 176 (369)
..|+|||+|++|+-+|..|++ .|.+|+++++.+... + .
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 479999999999999999985 488999998753210 0 0
Q ss_pred -----CC-----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 177 -----IG-----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 177 -----~~-----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
++ ..+.+.+.+.+++.|++++.+++++.++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 00 1122345566677899999999999998777777788878889999999999998654
No 224
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=5.7e-05 Score=75.06 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=31.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~ 47 (369)
..+||||||+|.||++||..++ .|.+|+||||....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4689999999999999999886 58999999998643
No 225
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=5.5e-06 Score=81.63 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCC----CC-eEEE---cCCCc--EEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE----GS-DTYL---TSTGD--TIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~----~~-~~v~---~~~g~--~i~~d~vi~a~G~~ 234 (369)
..+...+.+.+++.||+++.++.+.++..++ +. ..+. ..+|+ .+.++.||+|||-.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 4577788888888999999999999876443 32 2222 24554 57899999999863
No 226
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.17 E-value=3.3e-06 Score=80.15 Aligned_cols=57 Identities=12% Similarity=-0.001 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc--EEeccEEEEcCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD--TIKADCHFLCTGKP 234 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~d~vi~a~G~~ 234 (369)
|.++.-.......++|-++++.++|+.+..+++...|...| |+ ++.++.||.|+|..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPW 224 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCcc
Confidence 34677777788889999999999999998777633444433 33 68999999999976
No 227
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.17 E-value=5.2e-06 Score=79.57 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=68.8
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
..+++++|||+|+.|+++|..|.+ .+.+|+++++.+.+. +. .+.++.....+.+++.||++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC
Confidence 346899999999999999999984 489999999887652 21 3456677777888999999999987631
Q ss_pred ccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
.+.+.+. .+.+|.||+|||..
T Consensus 216 --------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 --------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred --------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222223 37899999999985
No 228
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.16 E-value=8.1e-06 Score=75.51 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=67.8
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
..+++++|||+|+.|+++|..|.+ .+.+|+++++.+.+... .+.+......+.+.+.|++++.++.+..
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence 457899999999999999999984 48999999998765421 1223334455667777999999988865
Q ss_pred ccC----CCCCeEEEc--CCCcEEeccEEEEcCCCC
Q 046865 205 DSV----SEGSDTYLT--STGDTIKADCHFLCTGKP 234 (369)
Q Consensus 205 i~~----~~~~~~v~~--~~g~~i~~d~vi~a~G~~ 234 (369)
+.. +.+...... .++..+.+|.+|+|||..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 94 GEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred ccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 432 111111111 111247899999999984
No 229
>PRK12831 putative oxidoreductase; Provisional
Probab=98.16 E-value=1.3e-05 Score=76.85 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=67.6
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcc-hHHHHHHHHHhCCcEEEeCceee
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPK-AGDKTLDWLISKKVDVKLGQRVN 203 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~-~~~~~~~~l~~~gv~i~~~~~v~ 203 (369)
...++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ++.+ +.....+.+++.||++++++.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~ 215 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG 215 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC
Confidence 346899999999999999999985 489999999866431 11 2223 66666778889999999998663
Q ss_pred eccCCCCCeEEEcCCC-cEEeccEEEEcCCC-CCC
Q 046865 204 LDSVSEGSDTYLTSTG-DTIKADCHFLCTGK-PVG 236 (369)
Q Consensus 204 ~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~-~p~ 236 (369)
. .+.+.+. +++.+|.||+|||. .|.
T Consensus 216 ~--------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 216 K--------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred C--------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1 1222222 34579999999997 454
No 230
>PRK10262 thioredoxin reductase; Provisional
Probab=98.15 E-value=2.2e-05 Score=71.63 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=68.9
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc---cc--------cccC-----CcchHHHHHHHHHhCCcEEEe
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS---RL--------LEFI-----GPKAGDKTLDWLISKKVDVKL 198 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~---~~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~ 198 (369)
..++++|||+|+.|+.+|..+.++ +.++++++... .+ +|.. .+.+.+.+.+.....++++..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 82 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence 457899999999999999998853 77888886421 11 0111 123466667777778888877
Q ss_pred CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
+ .+..++..++...+..+++ ++.+|.||+|||..|+.+
T Consensus 83 ~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 83 D-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYL 120 (321)
T ss_pred e-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCCC
Confidence 6 4555655555555554433 789999999999988643
No 231
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.15 E-value=6.8e-06 Score=77.54 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=63.7
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINIT 88 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (369)
..+.+++|||||+.|+..|..++ -|.+|||||+.+.+.. ..++++.......+.+ .++++.... +..+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------~~D~ei~~~~~~~l~~--~gv~i~~~~~v~~~~ 241 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------GEDPEISKELTKQLEK--GGVKILLNTKVTAVE 241 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------cCCHHHHHHHHHHHHh--CCeEEEccceEEEEE
Confidence 35678999999999999998886 4999999999987541 1122221111111111 234444332 22332
Q ss_pred cc----eEEecCCe--EEeccEEEEccCCCCCCCCC
Q 046865 89 EN----EVLTAEGR--RVVYDYLVIATGHKDPVPKT 118 (369)
Q Consensus 89 ~~----~v~~~~g~--~~~~d~lviAtG~~~~~p~~ 118 (369)
.. .+.++++. ++.+|++++|+|.+|+..++
T Consensus 242 ~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 242 KKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred ecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCC
Confidence 21 35555665 68899999999999998865
No 232
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=2.7e-06 Score=81.34 Aligned_cols=43 Identities=37% Similarity=0.612 Sum_probs=37.9
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~ 51 (369)
...++++|||||||.|||+||+.|. .|.+|+|+|.++.+|+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 4556789999999999999999997 599999999999988543
No 233
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.14 E-value=2.6e-05 Score=68.03 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCC-----CeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-----SDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+...+-+.++..|-++++|-++..+..... .+.|.-..++++++..++-|+|...
T Consensus 197 ~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 197 SVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 3455566668899999999999988875443 2344444568999999999999853
No 234
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.14 E-value=8.8e-06 Score=65.85 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=28.8
Q ss_pred ceEEEeeeeeeecc----eEEecCCeEEeccEEEEccCC
Q 046865 77 GRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGH 111 (369)
Q Consensus 77 ~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~ 111 (369)
++++..+++.+... .+.+.+|..+.+|++|+|||.
T Consensus 117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 45677788888654 677889999999999999996
No 235
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.13 E-value=1.8e-05 Score=77.55 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=72.1
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------------ccC----CcchHHHHHHHHHhCCcEEEeCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EFI----GPKAGDKTLDWLISKKVDVKLGQ 200 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------------~~~----~~~~~~~~~~~l~~~gv~i~~~~ 200 (369)
-.++|||||+.|+.+|..+++ .+.+|+++++.. +. +.. .+++.+.+++.+++.|++++ ++
T Consensus 5 yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~ 80 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QA 80 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-cc
Confidence 479999999999999999884 489999999753 21 111 13566777778888899986 56
Q ss_pred eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.|..++.+++...+.+.++ ++.+|.+|+|||.+|...
T Consensus 81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 7777765444455666555 689999999999987653
No 236
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.13 E-value=8.8e-06 Score=83.90 Aligned_cols=92 Identities=20% Similarity=0.043 Sum_probs=71.7
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++|+|||+||.|+.+|..|++ .|.+|+++++.+++.. .++.++.+...+.+++.||++++|+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence 46899999999999999999984 5999999999875432 2345666777788899999999997653
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCC-CC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP-VG 236 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~-p~ 236 (369)
..+++++.....+|.|++|||.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 12555555556799999999984 53
No 237
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.12 E-value=1.7e-05 Score=73.21 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhC-CcEEEeCceeeeccCCCCC-eEEEc---C--CCcEEeccEEEEcCCCCCCchhhcccccC
Q 046865 180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGS-DTYLT---S--TGDTIKADCHFLCTGKPVGSDWLKDTILK 246 (369)
Q Consensus 180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~-~~v~~---~--~g~~i~~d~vi~a~G~~p~~~~l~~~~~~ 246 (369)
.+.+.+.+.+++. |++++++++|+.++..+++ ..|.. . +..++.+++|++.+|-. ...+++..+++
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksgi~ 254 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSGIP 254 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcCCh
Confidence 5667777778777 9999999999999876554 55543 2 23579999999999976 46677776654
No 238
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=1.9e-05 Score=77.38 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-e-EEE---cCCCc--EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-D-TYL---TSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~---~~~g~--~i~~d~vi~a~G~ 233 (369)
..+...+.+.+++.||++++++.+.++..+++. + .+. ..+|+ .+.++.||+|||-
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 467778888888899999999999987655443 2 222 24564 5889999999986
No 239
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.11 E-value=7e-06 Score=78.39 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=67.7
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+++|..|++ .+.+|+++++.+.+. + .+++++.....+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC-
Confidence 35789999999999999999984 489999999876542 2 23456666677788899999999985521
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCC-CCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGK-PVG 236 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~ 236 (369)
.+.+.+. ...+|.||+|||. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1333332 3468999999997 454
No 240
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.11 E-value=3.2e-05 Score=76.88 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=31.5
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~ 47 (369)
..+||||||||.|||+||.+++ .|.+|+||||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999986 59999999986654
No 241
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.11 E-value=1e-05 Score=77.20 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=66.9
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------cC--CcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------FI--GPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
.+++|+|||+||.|+.+|..|+++..+.+|+++++.+.+.. .. ...+...+.+.++..+|+++.|..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46789999999999999999985446999999999886532 11 112344566677788999999876631
Q ss_pred ccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+.+++- ...+|.||+|+|..+
T Consensus 105 --------dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 105 --------DVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred --------cccHHHH-hhhCCEEEEecCCCC
Confidence 1233332 246999999999875
No 242
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.10 E-value=1.8e-05 Score=81.00 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=66.9
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++|+|||||+.|+.+|..|++ .|.+|+++++.+.+. |. .+.+....-.+.+++.||++++++.+ .+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE
Confidence 35789999999999999999985 489999999876542 21 23345555567788899999999876 12
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
.+.+.....+|.||+|||.++.
T Consensus 615 ---------~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 615 ---------TVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ---------EhhhheeccCCEEEECcCCCCC
Confidence 2223334568999999999753
No 243
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.07 E-value=3.5e-05 Score=75.94 Aligned_cols=55 Identities=15% Similarity=-0.033 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EE---EcCCCc--EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TY---LTSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~i~~d~vi~a~G~ 233 (369)
..+...+.+.+++.||+++.++.+.++..+++.+ .+ ...+|+ .+.++.||+|||-
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 3566777787888899999999999886554432 22 224564 5889999999994
No 244
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.05 E-value=1.3e-05 Score=77.49 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE-EEcCC-C--cEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT-YLTST-G--DTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~~-g--~~i~~d~vi~a~G~~ 234 (369)
..+.+.+.+.+++ .||++++++.+.++..+++.+. +...+ + ..+.++.||+|||-.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 4677788888877 6999999999998875554332 33322 3 368999999999863
No 245
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.04 E-value=3.8e-05 Score=73.40 Aligned_cols=94 Identities=21% Similarity=0.260 Sum_probs=65.9
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------------------------C----C--------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I----G-------- 178 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------~----~-------- 178 (369)
.++|||+|+.|++.|..+++ .|.+|+++++. .+... + .
T Consensus 4 DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cEEEECCCHHHHHHHHHHHh--CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 58999999999999999884 49999999974 21100 0 0
Q ss_pred ---------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 179 ---------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 179 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.++.+.+++.+++.||+++.+ ++..+. .+.+.+. .+|+++++|.+|+|||.+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~~~v~v~-~~g~~~~~d~lIiATGs~p~~p 145 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVG--PNTVEVL-QDGTTYTAKKILIAVGGRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--CCEEEEe-cCCeEEEcCEEEEecCCcCCCC
Confidence 023344556677889999887 444443 2234443 4577899999999999998654
No 246
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.00 E-value=8.8e-05 Score=72.98 Aligned_cols=55 Identities=20% Similarity=0.050 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE----EEcCCCc--EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT----YLTSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~----v~~~~g~--~i~~d~vi~a~G~ 233 (369)
..+...+.+.+.+ .+|+++.++.+.++..+++.+. +...+|+ .+.++.||+|||-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 3566677766655 4899999999998765544322 2234663 6889999999985
No 247
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.97 E-value=7.3e-05 Score=71.85 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=67.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCc-------------------------------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP------------------------------- 179 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~------------------------------- 179 (369)
-+++|||+|+.|+.+|..+++ .|.+|+++++.+.+... .+.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 469999999999999999985 48999999986443110 000
Q ss_pred c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCch
Q 046865 180 K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 180 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~ 238 (369)
+ ..+.+.+.+++.||+++.++. ..+ +.+.+.+...+|+ ++.+|.+|+|||.+|..+
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRA-RFV--DPHTVEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 0 112233456678999998753 222 2345566666664 799999999999988643
No 248
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.97 E-value=5.7e-05 Score=72.08 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=64.1
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CC--------------cch-----------HHH
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IG--------------PKA-----------GDK 184 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~--------------~~~-----------~~~ 184 (369)
-+++|||+|+.|+++|..+++ .+.+|+++++.+..+.. .+ +++ ...
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999984 58999999987532110 01 011 111
Q ss_pred HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC-CcEEeccEEEEcCCCCCCch
Q 046865 185 TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-GDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 185 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~d~vi~a~G~~p~~~ 238 (369)
..+.+++.||+++.++.. .+ ++..+.+...+ ..++.+|.+|+|||.+|+.+
T Consensus 82 ~~~~~~~~gV~~~~g~~~-~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p 133 (438)
T PRK07251 82 NYAMLAGSGVDLYDAEAH-FV--SNKVIEVQAGDEKIELTAETIVINTGAVSNVL 133 (438)
T ss_pred HHHHHHhCCCEEEEEEEE-Ec--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence 234567789999887642 22 23334444322 24799999999999988653
No 249
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.96 E-value=8.6e-05 Score=71.35 Aligned_cols=97 Identities=26% Similarity=0.279 Sum_probs=67.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc--------ccc--------------------cCC----------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--------LLE--------------------FIG---------- 178 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~--------~l~--------------------~~~---------- 178 (369)
++++|||+|+.|+++|..+++ .+.+|+++++..- ..| ...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 479999999999999999885 4899999997640 000 000
Q ss_pred c-c-----------hHHHHHHHHHhCCcEEEeCceeeecc--CCCCCeEEEcCCCc--EEeccEEEEcCCCCCC
Q 046865 179 P-K-----------AGDKTLDWLISKKVDVKLGQRVNLDS--VSEGSDTYLTSTGD--TIKADCHFLCTGKPVG 236 (369)
Q Consensus 179 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~--~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~ 236 (369)
. . ..+.+.+.+++.||+++.++.. .++ .+.+.+.+.+.+|+ ++.+|.+|+|||.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGR-LIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 0 0 0223445677789999988543 222 33455667777775 7999999999999986
No 250
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.94 E-value=2.3e-05 Score=75.21 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=68.0
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+.+|..++. .+.+|+++++.+.+. | .++.++.....+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence 45789999999999999999884 489999999887542 2 234556666778889999999999877321
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
+...+ ....+|.||+|||..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999999764
No 251
>PRK07208 hypothetical protein; Provisional
Probab=97.93 E-value=9.7e-06 Score=78.32 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eE-EEc--CCCc--EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DT-YLT--STGD--TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~-v~~--~~g~--~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.+++.|++|+++++|+++..+++. +. +.. .+|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 367888889999999999999999999876554 22 222 2453 6889999999764
No 252
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.93 E-value=6.8e-05 Score=69.68 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=64.3
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----cCCcchH------------------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----FIGPKAG------------------------------ 182 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----~~~~~~~------------------------------ 182 (369)
.++|||+|+.|+.+|..|.+..++.+|.++++.+.+.+ ....++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 47999999999999999986556999999999874432 1111111
Q ss_pred --------HHHHHH-HHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 183 --------DKTLDW-LISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 183 --------~~~~~~-l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
..+.+. +++.+..++++++|..++ .+. +++.+|+++++|.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~--v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG--VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE--EEECCCCEEEeeEEEECCCCCC
Confidence 111122 222244477788888773 233 4447888999999999999775
No 253
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.92 E-value=8.2e-06 Score=76.54 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=29.1
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~ 44 (369)
|||+||||||||+++|+.|+ .|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999997 59999999997
No 254
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.92 E-value=4.8e-05 Score=70.17 Aligned_cols=101 Identities=25% Similarity=0.406 Sum_probs=75.8
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----------CCcchHHHHHHHHHhCCcEEEeCcee
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTLDWLISKKVDVKLGQRV 202 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----------~~~~~~~~~~~~l~~~gv~i~~~~~v 202 (369)
...++++|+|+|+.|.-++..+.+..+--+++++.+...+ |. ....+.....+++++.||++++++.|
T Consensus 72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v 150 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-PYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSV 150 (478)
T ss_pred cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-cccchhcccceeeccccccccChhhHhhcCceEEEccee
Confidence 3468999999999876666666655555688888865432 21 12344555667899999999999999
Q ss_pred eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
+.++.. ..++.+.+|++++++.+++|||..|.+
T Consensus 151 ~~~D~~--~K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 151 VKADLA--SKTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred EEeecc--ccEEEeCCCceeecceEEEeecCcccc
Confidence 988654 346888999999999999999996543
No 255
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.92 E-value=7.7e-05 Score=61.89 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=97.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------C-------------------------------
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I------------------------------- 177 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~------------------------------- 177 (369)
...++|+|+||+|+-.|.+|+++ +.+|.+++++-.+... |
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d 107 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD 107 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC--CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence 46799999999999999999964 9999999987433110 0
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeE-EEc------C-----CCcEEeccEEEEcCCCCCCc-hhhccc
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDT-YLT------S-----TGDTIKADCHFLCTGKPVGS-DWLKDT 243 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~-v~~------~-----~g~~i~~d~vi~a~G~~p~~-~~l~~~ 243 (369)
..++...+....-+.|++|+..+.|+++-..++ .+. +.. . |--.++++.||-+||..... .++...
T Consensus 108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 123444455555667899999999987755444 221 111 1 12378999999999985432 222111
Q ss_pred c--cCCCCCCCC--------cEEeCCceeeccCCCeEEecccCCc--cccchh--HH-HHHHHHHHHHHHHHHhh
Q 046865 244 I--LKDSLDTDG--------MLMVDENLRVKGQKNIFAIGDITDI--REIKQG--FL-AQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 244 ~--~~~~~~~~g--------~i~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~~-A~~~g~~~a~~i~~~~~ 303 (369)
. ++..+...+ .+.|+...+. +||+|++|=.++- ..+..+ .- -.-+|+.+|+-++..++
T Consensus 188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 188 IPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 1 111111111 1333334443 8999999976532 111111 11 23578888887775543
No 256
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.92 E-value=8.6e-05 Score=71.99 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=83.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------------------------------C--C----
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------I--G---- 178 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------------------------------~--~---- 178 (369)
.++|+|||+|++|+-.+..+.+. |.+++++++.+.+... + +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 37899999999999999999864 8999999998654210 0 0
Q ss_pred -----cchHHHHHHHHHhCCc--EEEeCceeeeccCCC-----CCeEEEcCC-Cc--EEeccEEEEcCCCC--CCchhhc
Q 046865 179 -----PKAGDKTLDWLISKKV--DVKLGQRVNLDSVSE-----GSDTYLTST-GD--TIKADCHFLCTGKP--VGSDWLK 241 (369)
Q Consensus 179 -----~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-----~~~~v~~~~-g~--~i~~d~vi~a~G~~--p~~~~l~ 241 (369)
.++.++++...+..++ .|.+|++|.+++..+ +...|++.+ |+ +..+|.|++|+|.- |+.+.-.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 3567778888877776 588999999887533 234565543 42 45689999999974 4433211
Q ss_pred ccccCCCCCCCCcEEeCCceeec---cCCCeEEecccC
Q 046865 242 DTILKDSLDTDGMLMVDENLRVK---GQKNIFAIGDIT 276 (369)
Q Consensus 242 ~~~~~~~~~~~g~i~vd~~l~~~---~~~~i~a~GD~~ 276 (369)
..++. . -+|.+.-...++.. ..++|-++|-..
T Consensus 159 ~~G~e-~--F~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 159 FPGLE-K--FKGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp -CTGG-G--HCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred hhhhh-c--CCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 12221 1 24666655555432 256788888643
No 257
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.91 E-value=3.2e-05 Score=74.33 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=60.4
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT-- 88 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (369)
.++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+.. ...+...........+ .+++++.+ .+..++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------~~~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-------GEDAEVSKVVAKALKK--KGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-------CCCHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence 479999999999999999886 5999999999875431 0111111000000111 24555543 344443
Q ss_pred cc--eEEecCC--eEEeccEEEEccCCCCCCCC
Q 046865 89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 89 ~~--~v~~~~g--~~~~~d~lviAtG~~~~~p~ 117 (369)
.. .+...++ .++.+|.+++|+|..|+.+.
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 22 2333455 57999999999999998764
No 258
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=1.2e-05 Score=75.20 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=37.0
Q ss_pred CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
+.|+|+..+++|.+|-+.+.... ..|..||-+|+-|.+...++++
T Consensus 352 ~tLEtK~I~GLf~AGQINGTtGY---EEAAaQGliAGiNAal~~~~~~ 396 (621)
T COG0445 352 PTLETKKIKGLFFAGQINGTTGY---EEAAAQGLIAGINAALKVQGKE 396 (621)
T ss_pred cchhhceecceEEcccccCCchh---HHHHhhhHHHHHHHHHHhcCCC
Confidence 46888889999999999876432 4788999999999998877764
No 259
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.91 E-value=1e-05 Score=76.73 Aligned_cols=35 Identities=37% Similarity=0.487 Sum_probs=28.1
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
||||||||+||++||..++ .|.+|+|||+.+.+|.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 8999999999999999886 5999999999998764
No 260
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.91 E-value=3.1e-05 Score=78.79 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=68.0
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+..|..|++ .|.+|+++++.+.+. | .++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC-
Confidence 35789999999999999999984 489999999865432 1 12445666666778889999999976521
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCC-CCCc
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGK-PVGS 237 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~~ 237 (369)
.+++++..+..+|.||+|||. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 133333345679999999998 4543
No 261
>PRK09897 hypothetical protein; Provisional
Probab=97.90 E-value=0.00012 Score=70.85 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=68.8
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc----------------------------------------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------------- 176 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------------------- 176 (369)
++|+|||+|+.|+-++..|.+.....+|++++++..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 4799999999999999999764445689999986432110
Q ss_pred --------------CCcc--hH-------HHHHHHHHhCC--cEEEeCceeeeccCCCCCeEEEcCC-CcEEeccEEEEc
Q 046865 177 --------------IGPK--AG-------DKTLDWLISKK--VDVKLGQRVNLDSVSEGSDTYLTST-GDTIKADCHFLC 230 (369)
Q Consensus 177 --------------~~~~--~~-------~~~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~d~vi~a 230 (369)
+.|. .. +.+.+.+.+.| ++++.+++|+.++..++...+.+.+ +..+.+|.||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 0000 11 11223334455 7888899999998776677777755 468999999999
Q ss_pred CCCCC
Q 046865 231 TGKPV 235 (369)
Q Consensus 231 ~G~~p 235 (369)
+|..+
T Consensus 162 tGh~~ 166 (534)
T PRK09897 162 TGHVW 166 (534)
T ss_pred CCCCC
Confidence 99754
No 262
>PRK06753 hypothetical protein; Provisional
Probab=97.89 E-value=0.00012 Score=68.22 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=70.2
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----C------------------------------Cc---
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----I------------------------------GP--- 179 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----~------------------------------~~--- 179 (369)
+|+|||||+.|+-+|..|++ .|.+|+++++.+.+... + ++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT 79 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence 68999999999999999985 48999999987532100 0 00
Q ss_pred c---------------hHHHHHHHHHh--CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 K---------------AGDKTLDWLIS--KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~---------------~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
. -...+.+.|.+ .+.++++++++++++.+++.+.+++++|+++.+|.||-|.|....
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 0 01123333322 246789999999998777778888889999999999999997643
No 263
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.89 E-value=9.4e-05 Score=70.64 Aligned_cols=97 Identities=22% Similarity=0.225 Sum_probs=64.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CC-----------cchH----------HHH---
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IG-----------PKAG----------DKT--- 185 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~-----------~~~~----------~~~--- 185 (369)
-.++|||||+.|+.+|..+++ .+.+|+++++.+..+.. .+ .++. +.+
T Consensus 4 yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999985 48999999987532110 00 0111 111
Q ss_pred -HHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCc-EEeccEEEEcCCCCCCch
Q 046865 186 -LDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGD-TIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 186 -~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~ 238 (369)
.+.+.+ .|++++.++ +..+. .+.+.+.+.+|. ++.+|.+|+|||.+|..+
T Consensus 82 ~~~~~~~~~gv~~~~g~-~~~i~--~~~~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQ-AEFIN--NHSLRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred HHHHHhhcCCcEEEEEE-EEEec--CCEEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 122333 389988774 43332 345667766775 699999999999988643
No 264
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.87 E-value=1.3e-05 Score=75.17 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=31.1
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
.+||+|||||++|+++|..|+ +|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 579999999999999999997 5999999999874
No 265
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.86 E-value=4e-05 Score=73.67 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=60.6
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (369)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... .++........... ..+++++.+ .+..++..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~~~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~ 242 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-------EDKEISKLAERALK--KRGIKIKTGAKAKKVEQT 242 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-------CCHHHHHHHHHHHH--HcCCEEEeCCEEEEEEEe
Confidence 468999999999999998886 59999999998764311 11111100000010 124555543 34444422
Q ss_pred ----eEEecCC---eEEeccEEEEccCCCCCCCC
Q 046865 91 ----EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 91 ----~v~~~~g---~~~~~d~lviAtG~~~~~p~ 117 (369)
.+.+.++ +++.+|.+++|+|.+|+...
T Consensus 243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 2344444 67999999999999987654
No 266
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=0.00014 Score=69.99 Aligned_cols=97 Identities=27% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------c------------------cC-------Ccc-
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------E------------------FI-------GPK- 180 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~------------------~~-------~~~- 180 (369)
.-+++|||+|+.|+..|..+++ .|.+|.++++.. +. | .+ ..+
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDF 80 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 3479999999999999999985 499999999752 10 0 00 001
Q ss_pred -------------hHHHHHHHHHhCCcEEEeCceeeeccCC-----CCCeEEEcCCC--cEEeccEEEEcCCCCCC
Q 046865 181 -------------AGDKTLDWLISKKVDVKLGQRVNLDSVS-----EGSDTYLTSTG--DTIKADCHFLCTGKPVG 236 (369)
Q Consensus 181 -------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~-----~~~~~v~~~~g--~~i~~d~vi~a~G~~p~ 236 (369)
+.+...+.+++.||+++.++- ..+... ++.+.+.+.+| +++.+|.+|+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a-~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIG-RILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 111223456677999999853 334322 22566777776 47999999999999985
No 267
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.85 E-value=4.2e-05 Score=73.71 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=66.8
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+++|..|++ .+.+|+++++.+++. | .+++++.....+.+++.||++++++.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~- 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV- 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-
Confidence 34799999999999999999985 488999999887642 2 13445666667788899999999988741
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
. +.. +.....+|.|++|||..
T Consensus 219 ~-------~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 219 D-------ISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred c-------cCH-HHHHhhCCEEEEccCCC
Confidence 1 110 11235799999999987
No 268
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.85 E-value=4.6e-05 Score=79.39 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 206 (369)
.++|+|||+|+.|+..|..|++ .|.+|+++++.+.+. |. .+.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK-- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC--
Confidence 4789999999999999999985 489999999876542 21 2456777788889999999999975421
Q ss_pred CCCCCeEEEcCCC-cEEeccEEEEcCCCC-CC
Q 046865 207 VSEGSDTYLTSTG-DTIKADCHFLCTGKP-VG 236 (369)
Q Consensus 207 ~~~~~~~v~~~~g-~~i~~d~vi~a~G~~-p~ 236 (369)
. ++..+- +...+|.||+|||.. |.
T Consensus 506 ----~--~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 ----T--FTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ----c--cCHHHHhhccCCCEEEEecCCCCCC
Confidence 1 111111 124689999999984 44
No 269
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.85 E-value=7.6e-05 Score=72.10 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=64.9
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY 214 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v 214 (369)
..++++|+|+|.+|+++|..|.+ .|.+|+++++.+. +....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence 46789999999999999988874 4899999987642 334456677888999999886442
Q ss_pred EcCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865 215 LTSTGDTIKADCHFLCTGKPVGSDWLKD 242 (369)
Q Consensus 215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~~ 242 (369)
....+|.||+++|.+|+.+++..
T Consensus 75 -----~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 75 -----LPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred -----ccCCCCEEEECCCcCCCCHHHHH
Confidence 12458999999999999886543
No 270
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.85 E-value=1.7e-05 Score=67.76 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.9
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
.+|+|||+|++|++||+.|+ .|.+|+|+||+.-.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvG 37 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVG 37 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcc
Confidence 47999999999999999997 599999999987665
No 271
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.6e-05 Score=74.32 Aligned_cols=41 Identities=34% Similarity=0.401 Sum_probs=36.0
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL 54 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~ 54 (369)
++|+|+|||.|||+||+.|+ .|++|+|+|.++.+|+.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 58999999999999999997 699999999999988654443
No 272
>PRK11445 putative oxidoreductase; Provisional
Probab=97.83 E-value=1.7e-05 Score=73.40 Aligned_cols=34 Identities=38% Similarity=0.406 Sum_probs=30.4
Q ss_pred cceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~ 46 (369)
++||+||||||||+++|..|++.++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 4799999999999999999975599999998864
No 273
>PLN02661 Putative thiazole synthesis
Probab=97.83 E-value=0.00035 Score=63.35 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=94.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------cCCc---------
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------FIGP--------- 179 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------~~~~--------- 179 (369)
.-+++|||+|+.|+-+|..+++ .++.+|+++++...+.. .++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 3579999999999999999974 35889999998653211 0111
Q ss_pred --chHHHHHH-HHHhCCcEEEeCceeeeccCCCCCe-EEEc------CC--C------cEEeccEEEEcCCCCCCch---
Q 046865 180 --KAGDKTLD-WLISKKVDVKLGQRVNLDSVSEGSD-TYLT------ST--G------DTIKADCHFLCTGKPVGSD--- 238 (369)
Q Consensus 180 --~~~~~~~~-~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~------~~--g------~~i~~d~vi~a~G~~p~~~--- 238 (369)
++...+.+ .+++.||+++.++.+.++..+++.+ .+.. .+ + ..++++.||+|||......
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 11123333 3345789999999988876554422 2221 11 1 2689999999999653211
Q ss_pred --hhcccccCCCCCCCCcE--------EeCCceeeccCCCeEEecccCCc--cccchh--H-HHHHHHHHHHHHHHHHhh
Q 046865 239 --WLKDTILKDSLDTDGML--------MVDENLRVKGQKNIFAIGDITDI--REIKQG--F-LAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 239 --~l~~~~~~~~~~~~g~i--------~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~-~A~~~g~~~a~~i~~~~~ 303 (369)
++...++-..+..-..+ .|+..-+. +|++|++|=.+.- ..+..+ . .-.-+|+.+|+-|+..++
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 11111110000001111 12222222 8999999976532 111111 1 224578999999988876
Q ss_pred C
Q 046865 304 G 304 (369)
Q Consensus 304 g 304 (369)
.
T Consensus 329 ~ 329 (357)
T PLN02661 329 L 329 (357)
T ss_pred c
Confidence 3
No 274
>PRK07236 hypothetical protein; Provisional
Probab=97.83 E-value=1.8e-05 Score=74.24 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=31.5
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
+.++|+|||||++|+++|..|+ .|++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3589999999999999999997 5999999999864
No 275
>PRK06116 glutathione reductase; Validated
Probab=97.83 E-value=0.00013 Score=69.82 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=63.5
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------------------------c--CC---c-----
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------F--IG---P----- 179 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------------------------~--~~---~----- 179 (369)
.++|||+|+.|+.+|..+++ .|.+|+++++. .+.. . .+ +
T Consensus 6 DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAM--YGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 69999999999999999984 48999999975 2200 0 00 0
Q ss_pred -----------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 180 -----------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 180 -----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
++.+.+.+.+++.||+++.++ +..+. .. ++++ +|+++++|.+|+|||.+|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~~--~v~~-~g~~~~~d~lViATGs~p~~p 146 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--AH--TVEV-NGERYTADHILIATGGRPSIP 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--CC--EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence 011223344667899999885 33332 22 3444 677899999999999998654
No 276
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=9.9e-05 Score=71.04 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=64.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCc-------------------------------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP------------------------------- 179 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~------------------------------- 179 (369)
-.++|||+|+.|+..|..+++ .|.+|+++++.+.+... .+.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 479999999999999998884 49999999986433110 000
Q ss_pred chH-----------HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCC
Q 046865 180 KAG-----------DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~-----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~ 236 (369)
.+. ..+...+++.||+++.++.. .+ +.+.+.+...+| .++++|.+|+|||.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~-~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK-FT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 010 11123456679999987533 22 334556666666 47999999999999885
No 277
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.81 E-value=1.7e-05 Score=74.54 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
+||+||||||||++||+.|+ .|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 58999999999999999987 5999999999754
No 278
>PLN02576 protoporphyrinogen oxidase
Probab=97.81 E-value=2e-05 Score=76.54 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=34.9
Q ss_pred CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEIT 50 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~~~ 50 (369)
.++||+|||||++||+||++|+ . |.+|+|+|+++.+|+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 4579999999999999999997 4 8999999999988854
No 279
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.81 E-value=4.7e-05 Score=72.44 Aligned_cols=95 Identities=22% Similarity=0.232 Sum_probs=60.1
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (369)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+..+ ...+.........+. -.+++++. ..+..++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~~~~~~l~--~~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK------LFDEEMNQIVEEELK--KHEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc------ccCHHHHHHHHHHHH--HcCCEEEeCCEEEEEecC
Confidence 469999999999999999886 58999999998754211 001111000000000 12456543 344455432
Q ss_pred --eEEecCCeEEeccEEEEccCCCCCC
Q 046865 91 --EVLTAEGRRVVYDYLVIATGHKDPV 115 (369)
Q Consensus 91 --~v~~~~g~~~~~d~lviAtG~~~~~ 115 (369)
.+.+.+++++.+|.+++|+|..|..
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 2355678889999999999998764
No 280
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.78 E-value=9e-05 Score=76.24 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=63.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-------c--CCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------F--IGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-------~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 206 (369)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+.+.. . .+.+......+.+.+.||++++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d--- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD--- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence 4689999999999999999984 4899999998765422 1 233455555567788899999884311
Q ss_pred CCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 207 ~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+...+.+...+|.||+|||..+
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWK 633 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCC
Confidence 1222233456899999999875
No 281
>PRK07846 mycothione reductase; Reviewed
Probab=97.77 E-value=7.8e-05 Score=71.31 Aligned_cols=96 Identities=16% Similarity=0.256 Sum_probs=61.5
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (369)
..+++|||||+.|+.+|..|+ .|.+|+|+++.+.+... .++.... .+.... ..+++++. ..+..++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~~-~l~~l~--~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-------LDDDISE-RFTELA--SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-------cCHHHHH-HHHHHH--hcCeEEEeCCEEEEEEEc
Confidence 479999999999999999886 59999999998754310 1111110 000000 12344432 234444321
Q ss_pred ----eEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865 91 ----EVLTAEGRRVVYDYLVIATGHKDPVPKT 118 (369)
Q Consensus 91 ----~v~~~~g~~~~~d~lviAtG~~~~~p~~ 118 (369)
.+.+.+++++.+|.+++|+|.+|+.+..
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence 3555677889999999999999987653
No 282
>PRK06753 hypothetical protein; Provisional
Probab=97.77 E-value=2.3e-05 Score=73.10 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=30.2
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
+||+|||||++|+++|..|+ +|++|+|+|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 48999999999999999997 5999999999875
No 283
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.77 E-value=0.00027 Score=65.14 Aligned_cols=93 Identities=27% Similarity=0.320 Sum_probs=64.6
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-cccc------------------------------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLL------------------------------------------ 174 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~l------------------------------------------ 174 (369)
.|+|||||..|+|.|..+++ .|.+|.|+... +.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 48999999999999999985 49999999432 2110
Q ss_pred ----cc-------CC-cchHHHHHHHHHh-CCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCC
Q 046865 175 ----EF-------IG-PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 175 ----~~-------~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
|. .| ..+.+.+++.+++ .+++++. ..|+++..+++ ...|.+.+|+++.+|.||+|||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00 01 1345566777776 6899875 57888766555 45678899999999999999998
No 284
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.76 E-value=2.5e-05 Score=72.12 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=32.9
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
+||+|||||++|+++|..|+ .|.+|+|+|+++..|.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 69999999999999999987 5899999999888775
No 285
>PLN02568 polyamine oxidase
Probab=97.76 E-value=2.8e-05 Score=75.56 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232 (369)
Q Consensus 181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G 232 (369)
+.+.+.+.+. +-+|+++++|+.|+.+++.+.|.+.+|+++.+|.||+++.
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 3444444442 2369999999999877777888888998999999999975
No 286
>PRK06126 hypothetical protein; Provisional
Probab=97.76 E-value=2.6e-05 Score=76.57 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=33.1
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
|....+||+|||||++|+++|..|+ +|++|+|||+.+.
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3445689999999999999999997 5999999998764
No 287
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.74 E-value=8.2e-05 Score=71.57 Aligned_cols=89 Identities=20% Similarity=0.348 Sum_probs=65.8
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+..|..|++ .+.+|+++++.+.+.. .++.++.....+.+++.||++++++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-
Confidence 34789999999999999999984 4899999998876521 12345556666778889999999987642
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
. +.. +.....+|.+|+|||..
T Consensus 219 ~-------~~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 219 D-------ITA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred c-------CCH-HHHHhhCCEEEEecCCC
Confidence 1 000 11135799999999997
No 288
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.74 E-value=2.7e-05 Score=75.45 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCC-----cEEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTG-----DTIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.++++|++|+++++|++|..+++. ..+.+.++ +++.+|.||+++..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 468889999999999999999999999876553 23444343 57899999999875
No 289
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=8.6e-05 Score=71.58 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=59.8
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (369)
..+|+|||||+.|+.+|..|+ .|.+|+|+++.+.+... .++.+.......+.. .+++++.+ .+..++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-------ADEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG 253 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-------CCHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence 479999999999999998886 58999999998754311 011111000000111 24555433 34444321
Q ss_pred ----eEEecC--C--eEEeccEEEEccCCCCCCCC
Q 046865 91 ----EVLTAE--G--RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 91 ----~v~~~~--g--~~~~~d~lviAtG~~~~~p~ 117 (369)
.+...+ + .++.+|.+++|+|..|+.+.
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 233333 3 47999999999999998764
No 290
>PLN02985 squalene monooxygenase
Probab=97.73 E-value=3.1e-05 Score=75.00 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=32.8
Q ss_pred cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
+....+||+|||||++|+++|..|+ .|.+|+|+||..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4556789999999999999999997 599999999974
No 291
>PTZ00367 squalene epoxidase; Provisional
Probab=97.72 E-value=2.6e-05 Score=76.09 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=32.1
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
++..+||+|||||++|+++|..|+ .|.+|+|+|+..
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 345789999999999999999997 599999999975
No 292
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.72 E-value=0.00036 Score=61.21 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=32.3
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~ 52 (369)
.|||||+|.|||+|+..+- ++-.|+|+|++..+|....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 6999999999999998874 5667999999988876543
No 293
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.71 E-value=0.00011 Score=70.38 Aligned_cols=96 Identities=17% Similarity=0.287 Sum_probs=59.2
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (369)
..+++|||||+.|+.+|..|+ .|.+|+|+++.+.+... .++.+.......+.+ .+++++.+ .+..++..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-------~d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-------EDEDIAHILREKLEN--DGVKIFTGAALKGLNSY 240 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-------ccHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence 468999999999999998876 58999999998754311 011111000000111 24565543 34444422
Q ss_pred --eEEe-cCC--eEEeccEEEEccCCCCCCCC
Q 046865 91 --EVLT-AEG--RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 91 --~v~~-~~g--~~~~~d~lviAtG~~~~~p~ 117 (369)
.+.. .++ .++.+|.+++|+|..|+...
T Consensus 241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 2222 233 36999999999999988764
No 294
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.70 E-value=9.1e-05 Score=74.02 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=65.9
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+.+|..|+. .+.+|+++++.+.+. + ..+.++.+...+.+++.|+++++++.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC-
Confidence 35789999999999999999984 489999999887642 2 12445566667778889999999986521
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
. +.+.+. ...+|.||+|||..+
T Consensus 269 d-------v~~~~~-~~~~DaVilAtGa~~ 290 (652)
T PRK12814 269 D-------ITLEEL-QKEFDAVLLAVGAQK 290 (652)
T ss_pred c-------cCHHHH-HhhcCEEEEEcCCCC
Confidence 1 112221 235999999999875
No 295
>PRK06370 mercuric reductase; Validated
Probab=97.70 E-value=0.00026 Score=68.10 Aligned_cols=94 Identities=26% Similarity=0.312 Sum_probs=63.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---cc-----c--------------------cC------Ccch-
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---LL-----E--------------------FI------GPKA- 181 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~l-----~--------------------~~------~~~~- 181 (369)
-.++|||+|+.|+..|..+++ .|.+|+++++... .+ | .+ ..+.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 479999999999999999885 4999999997520 00 0 00 0011
Q ss_pred -------------HHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865 182 -------------GDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 182 -------------~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 238 (369)
...+.+.+++. ||+++.++.+. .++. +++. +++++.+|.+|+|||.+|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~--~v~v-~~~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPN--TVRV-GGETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCC--EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence 12334556666 99999887652 1222 3333 456799999999999998654
No 296
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.70 E-value=2.7e-05 Score=70.39 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCcceEEEECCChHHHHHHHHcc-------cCCcEEEEcCCCCccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEI 49 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-------~g~~V~lie~~~~~~~ 49 (369)
...+||+|||||||||+||++|+ +..+|+++||....|.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg 119 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG 119 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence 34689999999999999998874 2689999999987764
No 297
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.69 E-value=0.00056 Score=65.17 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe-EEEcC-CCcEEeccEEEEcCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD-TYLTS-TGDTIKADCHFLCTG 232 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~-~g~~i~~d~vi~a~G 232 (369)
..+.+.+.+.+++.|++|+++++++++..+ ++.+ .+... ++.++.++.||+|+|
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 457788888899999999999999988654 2322 23333 335799999999999
No 298
>PLN02697 lycopene epsilon cyclase
Probab=97.68 E-value=0.00035 Score=67.61 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc----------C-------------------------C---
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------I-------------------------G--- 178 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~----------~-------------------------~--- 178 (369)
-+++|||+|+.|+-+|..+++ .|.+|.++++...+... + +
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 479999999999999998874 48899999864221100 0 0
Q ss_pred -----cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCC
Q 046865 179 -----PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 179 -----~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p 235 (369)
..+.+.+.+.+.+.|+++ .++.|..++.+++... +.+.+|.++.++.||.|+|...
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 122345566667789998 5678888875555443 3557788999999999999864
No 299
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.66 E-value=3.9e-05 Score=74.33 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
..+.+.+.+.++++|++|+++++|.+|..+++ ...|++.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 36788899999999999999999999876544 446777888899999999998864
No 300
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.66 E-value=0.00012 Score=70.36 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=59.2
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 90 (369)
..+++|||+|+.|+.+|..|+ .|.+|+|+++.+.+... .++........... ..+++++.+. +..+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-------EEPEISAAVEEALA--EEGIEVVTSAQVKAVSVR 236 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-------cCHHHHHHHHHHHH--HcCCEEEcCcEEEEEEEc
Confidence 479999999999999999886 58999999998754311 11111100000000 1245554432 4444321
Q ss_pred ----eEEec---CCeEEeccEEEEccCCCCCCCC
Q 046865 91 ----EVLTA---EGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 91 ----~v~~~---~g~~~~~d~lviAtG~~~~~p~ 117 (369)
.+.+. +++++.+|.+++|+|.+|+...
T Consensus 237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 23322 2367999999999999988763
No 301
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.65 E-value=0.00052 Score=55.48 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=62.0
Q ss_pred EEEcCChhHHHHHHHHhhhC---CCCeEEEEEcCccc---------------------cccC---C-cchH---------
Q 046865 140 LIVGGGPTGVELAGEIAVDF---PEKKVTLVHKGSRL---------------------LEFI---G-PKAG--------- 182 (369)
Q Consensus 140 ~vvG~G~~g~e~a~~l~~~~---~~~~v~lv~~~~~~---------------------l~~~---~-~~~~--------- 182 (369)
+|||+|+.|+-++..|.+.. ...+|+++++.+.- ++.+ + +.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 48999999999999988763 46789999885321 0000 0 1111
Q ss_pred -----------------HHHH----HHHH--hCCcEEE-eCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 183 -----------------DKTL----DWLI--SKKVDVK-LGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 183 -----------------~~~~----~~l~--~~gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
+++. +.++ ..++++. ...+|..++..++...+.+.+|..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 1111 1111 2344443 345788887777777888899999999999999996
No 302
>PLN02661 Putative thiazole synthesis
Probab=97.65 E-value=4.4e-05 Score=69.14 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=32.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE 48 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~ 48 (369)
..+||+|||||++|++||+.|+ . +++|+|||++...+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 4689999999999999999997 3 79999999987654
No 303
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.65 E-value=8.6e-05 Score=70.09 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=62.1
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (369)
.++++|||+|+.|+.+|..|+ +|++|+++|+.+.++..... +.+.. .+....+. .+++++. ..+..++.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~------~~~~~-~~~~~l~~-~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD------PEVAE-ELAELLEK-YGVELLLGTKVVGVEGK 207 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh------HHHHH-HHHHHHHH-CCcEEEeCCceEEEEcc
Confidence 479999999999999999986 69999999999887643321 01110 01111111 1345532 233445432
Q ss_pred ----e---EEecCCeEEeccEEEEccCCCCC
Q 046865 91 ----E---VLTAEGRRVVYDYLVIATGHKDP 114 (369)
Q Consensus 91 ----~---v~~~~g~~~~~d~lviAtG~~~~ 114 (369)
. +...++..+++|.+++++|.+|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 1 46667788999999999999986
No 304
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.65 E-value=0.00012 Score=70.06 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=59.8
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE- 89 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (369)
..+++|||||+.|+.+|..|+ .|.+|+||++.+.+... .++.........+. ..+++++.+ .+..+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-------~d~~~~~~~~~~l~--~~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-------FDSMISETITEEYE--KEGINVHKLSKPVKVEKT 236 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------cCHHHHHHHHHHHH--HcCCEEEcCCEEEEEEEe
Confidence 479999999999999999886 59999999998754311 11111100000010 124454432 2333321
Q ss_pred ----ceEEecCC-eEEeccEEEEccCCCCCCCC
Q 046865 90 ----NEVLTAEG-RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 90 ----~~v~~~~g-~~~~~d~lviAtG~~~~~p~ 117 (369)
..+.+.++ ..+.+|.+++|+|..|+...
T Consensus 237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 13455566 57999999999999988754
No 305
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.64 E-value=4.8e-05 Score=70.67 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=39.5
Q ss_pred eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 257 vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
.+++|+++..||+|++|.+.+.... ..|..+|.+|+.|++..+.|++
T Consensus 321 l~~~l~~k~~~~l~~AGqi~g~~Gy---~ea~a~G~~Ag~n~~~~~~g~~ 367 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQITGVEGY---VESAASGLLAGINAARLALGKE 367 (436)
T ss_pred CchhccccCCCCEEeeeeecCchHH---HHHHHHHHHHHHHHHHHhcCCC
Confidence 4567999889999999999986432 3788999999999999988865
No 306
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.64 E-value=0.00012 Score=72.98 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=67.5
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+..|..|+. .|.+|+++++.+.+. + .+++++.+...+.+++.||++++++.+..-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence 36899999999999999999984 488999999987643 1 245566666677889999999999876320
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+.+.+ ....+|.|++|+|..+
T Consensus 387 --------~~~~~-l~~~~DaV~latGa~~ 407 (639)
T PRK12809 387 --------ITFSD-LTSEYDAVFIGVGTYG 407 (639)
T ss_pred --------CCHHH-HHhcCCEEEEeCCCCC
Confidence 11111 1346899999999864
No 307
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.64 E-value=0.00017 Score=69.10 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=60.3
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeec-
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITE- 89 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 89 (369)
..+++|||||+.|+.+|..|+ .|.+|+||++.+.+... .++.... .+.... ..+++++. ..+..++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~ 238 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------LDEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD 238 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------cCHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence 479999999999999999886 58999999998754210 1111110 000100 11344432 23334431
Q ss_pred -c--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 90 -~--~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
. .+.+.+++++.+|.+++|+|.+|+...
T Consensus 239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 1 345556778999999999999987654
No 308
>PRK14694 putative mercuric reductase; Provisional
Probab=97.63 E-value=0.00015 Score=69.79 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=58.1
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE- 89 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (369)
..+++|||+|+.|+.+|..|+ .|.+|+++++...+.. .++.........+. ..+++++.+ .+..++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------~~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~ 247 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------EDPAVGEAIEAAFR--REGIEVLKQTQASEVDYN 247 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------CCHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence 469999999999999998886 5899999997542210 11111100000011 125666543 3444432
Q ss_pred -c--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 90 -~--~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
. .+.+ ++.++.+|.+++|+|..|+...
T Consensus 248 ~~~~~v~~-~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 248 GREFILET-NAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred CCEEEEEE-CCCEEEeCEEEEccCCCCCcCC
Confidence 2 2333 3346999999999999988654
No 309
>PRK06834 hypothetical protein; Provisional
Probab=97.62 E-value=5.5e-05 Score=72.99 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=31.0
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
.+||+||||||+|+++|..|+ .|.+|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 589999999999999999997 5999999998764
No 310
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.60 E-value=0.00022 Score=67.50 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=62.5
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCc---chHHHHHHHHHhCCcEEEeCceeee
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGP---KAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~---~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
.+++|+|||+||.|+..|..|... .+.+|+++++.+.+... ..+ .+.+.+.+.+...+++++.|..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 478999999999999999987643 48999999999876421 111 3344455556668899887655531
Q ss_pred ccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
. ++.++ -.-.+|.||+|+|..+.
T Consensus 117 ------D--vt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ------D--LKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred ------c--cCHHH-HHhcCCEEEEEcCCCCC
Confidence 0 11111 12378999999998753
No 311
>PRK07121 hypothetical protein; Validated
Probab=97.60 E-value=6.6e-05 Score=72.73 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=33.6
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||||||+|.||++||.+++ .|.+|+||||.+..+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 4689999999999999999986 5999999999887553
No 312
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.002 Score=61.37 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=83.6
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCcccc----------------------ccCC----------cchH
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLL----------------------EFIG----------PKAG 182 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l----------------------~~~~----------~~~~ 182 (369)
-.+++|||+|++|+-+|..|.++ +.. +.++++++++. +.++ +++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 35799999999999999999865 554 88999875331 1111 1267
Q ss_pred HHHHHHHHhCCcE--EEeCceeeeccCC--CCCeEEEcCCCcE--EeccEEEEcCCCC--CCchhhcccccCCCCCCCCc
Q 046865 183 DKTLDWLISKKVD--VKLGQRVNLDSVS--EGSDTYLTSTGDT--IKADCHFLCTGKP--VGSDWLKDTILKDSLDTDGM 254 (369)
Q Consensus 183 ~~~~~~l~~~gv~--i~~~~~v~~i~~~--~~~~~v~~~~g~~--i~~d~vi~a~G~~--p~~~~l~~~~~~~~~~~~g~ 254 (369)
+++...+++.++. +..++.|..+..+ ++...|+++++.+ +.+|.||+|||.- |+.+-+ .+. .+-.|.
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~---~~f~g~ 160 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGL---DEFKGR 160 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCc---cCCCce
Confidence 7888888877654 4455556554433 3456777777755 5599999999983 332221 121 123454
Q ss_pred EEeCCc----eeeccCCCeEEecccC
Q 046865 255 LMVDEN----LRVKGQKNIFAIGDIT 276 (369)
Q Consensus 255 i~vd~~----l~~~~~~~i~a~GD~~ 276 (369)
+.--.+ ... .-++|-+||--+
T Consensus 161 ~~HS~~~~~~~~~-~GKrV~VIG~Ga 185 (443)
T COG2072 161 ILHSADWPNPEDL-RGKRVLVIGAGA 185 (443)
T ss_pred EEchhcCCCcccc-CCCeEEEECCCc
Confidence 433221 222 357899999554
No 313
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.59 E-value=5.5e-05 Score=71.69 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc---CCCc--EEeccEEEEcCCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT---STGD--TIKADCHFLCTGKPVG 236 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~i~~d~vi~a~G~~p~ 236 (369)
..+...+.+.++++|++|+.++.++++..+++.+ .+.. .+|+ ++.++.||+|||-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4678888999999999999999999987765532 2222 4554 6789999999997543
No 314
>PLN02507 glutathione reductase
Probab=97.59 E-value=0.00019 Score=69.45 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=60.3
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE- 89 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (369)
..+|+|||||+.|+.+|..++ .|.+|+|+++.+.+.. . .++.........+. -.+++++.+ .+..+..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~---~----~d~~~~~~l~~~l~--~~GI~i~~~~~V~~i~~~ 273 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR---G----FDDEMRAVVARNLE--GRGINLHPRTNLTQLTKT 273 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc---c----cCHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEe
Confidence 468999999999999998886 5899999998764321 0 11111100000010 124555433 2333331
Q ss_pred -c--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 90 -~--~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
+ .+...+++++.+|.+++|+|.+|+...
T Consensus 274 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 274 EGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred CCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 1 355557778999999999999988764
No 315
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.0012 Score=62.42 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-------------------------------cC-------
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------------------------------FI------- 177 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-------------------------------~~------- 177 (369)
.++++|||+|++|+-.|..|.+ .|.++++++|++.+.. .+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 6889999999999999999985 4899999998754311 00
Q ss_pred ---C--cchHHHHHHHHHhCCc--EEEeCceeeeccCCC-CCeEEEcCCC----cEEeccEEEEcCCCC--CCchhhccc
Q 046865 178 ---G--PKAGDKTLDWLISKKV--DVKLGQRVNLDSVSE-GSDTYLTSTG----DTIKADCHFLCTGKP--VGSDWLKDT 243 (369)
Q Consensus 178 ---~--~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~i~~d~vi~a~G~~--p~~~~l~~~ 243 (369)
+ .++.++++..++.-++ .|.+++.+.+++..+ +...|.+.++ ++.-+|.|++|+|-. |+.+.+.
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~-- 161 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP-- 161 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC--
Confidence 0 1456667777776665 578888787777665 5666665443 367799999999976 5444332
Q ss_pred ccCCCCCCCCcEEeCCceeec---cCCCeEEecccC
Q 046865 244 ILKDSLDTDGMLMVDENLRVK---GQKNIFAIGDIT 276 (369)
Q Consensus 244 ~~~~~~~~~g~i~vd~~l~~~---~~~~i~a~GD~~ 276 (369)
+.+.+.- .|.+.---.++.. ....|.++|--.
T Consensus 162 g~~~~~f-~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 162 GPGIESF-KGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred CCchhhc-CCcceehhhccCcccccCceEEEECCCc
Confidence 2211111 2333322222221 246788888443
No 316
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.58 E-value=0.00049 Score=65.19 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=67.4
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCcccccc-----CCcc-------------------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEF-----IGPK------------------------------- 180 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~l~~-----~~~~------------------------------- 180 (369)
+|+|||||+.|+-+|..|++ .+ .+|+++++.+.+.+. +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence 68999999999999999984 25 699999987543100 0000
Q ss_pred -----------------------hHHHHHHHHHhC--CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 181 -----------------------AGDKTLDWLISK--KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 181 -----------------------~~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
....+.+.|.+. .+.++.+++|+.++.+++.+.+.+++|+++++|.||.|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 011122223221 4567889999888766667788888998999999999999753
No 317
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.58 E-value=8.7e-05 Score=52.55 Aligned_cols=34 Identities=44% Similarity=0.695 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
+|+|||||+.|+.+|..|+ .+.+|+||++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 5899999999999999986 599999999998754
No 318
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.58 E-value=0.00048 Score=66.22 Aligned_cols=94 Identities=22% Similarity=0.193 Sum_probs=60.6
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCc-----------------------------chH
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-----------------------------KAG 182 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~-----------------------------~~~ 182 (369)
.++|||+|+.|+..|..+++ .|.+|+++++.+.+... .+. ++.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 69999999999999999885 49999999964322110 000 000
Q ss_pred --------------HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCC
Q 046865 183 --------------DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVG 236 (369)
Q Consensus 183 --------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~ 236 (369)
..+...+++.+|+++.+.. ++. +++.+.+.+.+|+ ++++|.+|+|||.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 1122334455777776642 222 2234556666664 6999999999999884
No 319
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.00022 Score=68.56 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=59.0
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (369)
..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+... .++.........+.+ .+++++.+ .+..++..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-------~d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-------EDAEVSKEIAKQYKK--LGVKILTGTKVESIDDN 242 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------cCHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence 469999999999999999886 58999999987654311 011111000000111 24555533 34444321
Q ss_pred ----eEEec--CC--eEEeccEEEEccCCCCCCCC
Q 046865 91 ----EVLTA--EG--RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 91 ----~v~~~--~g--~~~~~d~lviAtG~~~~~p~ 117 (369)
.+.+. +| +++.+|.+++|+|.+|+...
T Consensus 243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 23332 45 47999999999999988764
No 320
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.57 E-value=6.4e-05 Score=72.10 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEcCCCc-----EEeccEEEEcCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLTSTGD-----TIKADCHFLCTGK 233 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~-----~i~~d~vi~a~G~ 233 (369)
..+.+.+.+.+++.|++|++++.|++|...+ +.+ .+++.+|+ ++.+|.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 4567888888988999999999999996433 323 45565554 7999999999864
No 321
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.55 E-value=7.7e-05 Score=73.61 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=31.6
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
.++.+|+|||||++||++|..|+ +|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45689999999999999999997 599999999964
No 322
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.55 E-value=8e-05 Score=74.07 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCC
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY 46 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~ 46 (369)
..++||+||||||+||++|..|++ |.+|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 347899999999999999999974 899999999864
No 323
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.54 E-value=0.00019 Score=72.00 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=65.5
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++++|||+|+.|+..|..|+. .|.+|+++++.+.+. | .++.++.....+.+++.|+++++++.+..-
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 45799999999999999999984 589999999876542 2 124455555667788899999999876310
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+...+ ....+|.|++|+|..+
T Consensus 404 --------i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 404 --------ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --------CCHHH-HHhcCCEEEEeCCCCC
Confidence 11111 1236999999999753
No 324
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=9.2e-05 Score=64.91 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=34.4
Q ss_pred cceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcccc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~ 50 (369)
++|++|||+|.+|+.+|..|+. |.+|+||||++++|+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 4799999999999999997765 9999999999999864
No 325
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.51 E-value=0.00078 Score=70.61 Aligned_cols=100 Identities=19% Similarity=0.120 Sum_probs=67.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC-----------CcchHHHHHHHHHhC-CcEEEeCceee
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTLDWLISK-KVDVKLGQRVN 203 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-----------~~~~~~~~~~~l~~~-gv~i~~~~~v~ 203 (369)
..+|+|||+|+.|+..|..+++ .+.+|++++..+.+.... ..+....+.+.+++. +|++++++.|.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 4679999999999999999874 599999999876543211 113334455666655 59999999887
Q ss_pred eccCCCCCeEEE-c--------CC---C--cEEeccEEEEcCCCCCCc
Q 046865 204 LDSVSEGSDTYL-T--------ST---G--DTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 204 ~i~~~~~~~~v~-~--------~~---g--~~i~~d~vi~a~G~~p~~ 237 (369)
.+...+....+. . .. . .++.+|.||+|||..+..
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 664211110110 0 00 1 168999999999998754
No 326
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.51 E-value=0.00011 Score=71.99 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=32.5
Q ss_pred CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF 47 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~ 47 (369)
..+||||||+|.||++||.+++.|.+|+||||.+..
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~ 43 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLK 43 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCC
Confidence 468999999999999999999889999999998653
No 327
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.51 E-value=0.00066 Score=66.14 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=76.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCccc------cc-cCC-----cchHHHHHHHHHhCCcEEEeCcee
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRL------LE-FIG-----PKAGDKTLDWLISKKVDVKLGQRV 202 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~------l~-~~~-----~~~~~~~~~~l~~~gv~i~~~~~v 202 (369)
..+++|||.|..|..+..++.+..++ .+||++...++. ++ .+. +++.-.-.++.+++||+++++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46799999999999988888764333 578888765543 11 111 234444568899999999999999
Q ss_pred eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchh
Q 046865 203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW 239 (369)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~ 239 (369)
..+..+ ...|++++|.++.+|.+|+|||..|....
T Consensus 83 ~~idr~--~k~V~t~~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 83 IQIDRA--NKVVTTDAGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred EEeccC--cceEEccCCcEeecceeEEecCccccccC
Confidence 988654 45688899999999999999999986543
No 328
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.50 E-value=9.8e-05 Score=66.52 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCcEEEeCceeeeccC--CCC---CeEEEcCCCc----EEeccEEEEcCCCCCCchhhccccc
Q 046865 182 GDKTLDWLISKKVDVKLGQRVNLDSV--SEG---SDTYLTSTGD----TIKADCHFLCTGKPVGSDWLKDTIL 245 (369)
Q Consensus 182 ~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~---~~~v~~~~g~----~i~~d~vi~a~G~~p~~~~l~~~~~ 245 (369)
...+...+++.+++|++++.|.++.. +++ .+.+...++. .+.++.||+|.|.--.+.+|..+++
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 44555666555999999999999843 233 2334444443 5678999999997644555655554
No 329
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.48 E-value=0.00026 Score=68.25 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=59.2
Q ss_pred cceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeee
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINI 87 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (369)
..+++|||||+.|+.+|..+. .|.+|+||++.+.+.. ..++.........+.+ .+++++.+ .+..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------~~d~~~~~~l~~~L~~--~GI~i~~~~~v~~i 257 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------GFDSTLRKELTKQLRA--NGINIMTNENPAKV 257 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------ccCHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence 478999999999999996542 3899999999875431 0111111110001111 24555433 23333
Q ss_pred ec-----ceEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 88 TE-----NEVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 88 ~~-----~~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
.. ..+.+.++.++.+|.+++|+|..|+...
T Consensus 258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 21 1355556778999999999999987654
No 330
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.46 E-value=0.00031 Score=68.10 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=58.1
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeee--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINIT-- 88 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (369)
..+++|||||+.|+.+|..|+ .|.+|+|++++..+. . .++.........+.+ .+++++.+. +..+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~----~d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----G----FDRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM 251 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----c----CCHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence 458999999999999999886 599999998743211 1 111111000000111 145554332 22222
Q ss_pred -c-ceEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 89 -E-NEVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 89 -~-~~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
. ..+.+.+++++.+|.+++|+|.+|+...
T Consensus 252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred CCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 1 1355567788999999999999988654
No 331
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.46 E-value=0.00012 Score=69.29 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHccc-C-CcEEEEcCCCCc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYF 47 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~~~ 47 (369)
.+|+|||||++||++|..|++ | .+|+|+||.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 379999999999999999985 6 699999998653
No 332
>PLN02529 lysine-specific histone demethylase 1
Probab=97.46 E-value=0.00013 Score=72.93 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=35.6
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~ 50 (369)
...++|+|||||++||+||..|+ .|++|+|+|+++.+|..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 45689999999999999999997 59999999999988754
No 333
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.46 E-value=0.00074 Score=65.79 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=64.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc-ccc-----c---------------cC------------------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS-RLL-----E---------------FI------------------ 177 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~-~~l-----~---------------~~------------------ 177 (369)
-.|+|||||+.|+++|..+++ .|.+|.++++.. .+. | .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 369999999999999999884 599999998863 110 0 00
Q ss_pred ---------------Cc-chHHHHHHHHHhC-CcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCC
Q 046865 178 ---------------GP-KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 178 ---------------~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
|+ .+...+.+.+++. |++++.. .|..+..+++. ..|.+.+|.++.|+.||+|||.
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0223444555544 7888644 56666544443 3477788999999999999994
No 334
>PLN02676 polyamine oxidase
Probab=97.45 E-value=0.00014 Score=70.18 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=36.0
Q ss_pred cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 194 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.+|+++++|++|+.+++.+.|++.+|+++.+|.||+|...
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 6799999999998877788999999989999999999873
No 335
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.44 E-value=0.00014 Score=70.59 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=31.6
Q ss_pred cceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~ 46 (369)
.+||||||+|.||++||.+++.|.+|+||||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCC
Confidence 5799999999999999999988999999999875
No 336
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.00013 Score=72.07 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=39.4
Q ss_pred CCCcEEeCCceeeccCCCeEEecccCCccc------cchhHHHHHHHHHHHHHHHHHhhC
Q 046865 251 TDGMLMVDENLRVKGQKNIFAIGDITDIRE------IKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~------~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
..|.|.||.+.+| +.|++||+|+|++... -.....|.-.|++++++++..+.+
T Consensus 354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~ 412 (589)
T PRK08641 354 SMGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG 412 (589)
T ss_pred eCCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3588999999988 6999999999974311 112346778899999998876543
No 337
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.00013 Score=72.17 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
....+||||||+|.|||+||.+++ .|.+|+||||..
T Consensus 9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 345689999999999999999886 589999999974
No 338
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.43 E-value=0.00013 Score=71.00 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=32.5
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||||||+| +|++||.+++ .|.+|+||||.+..+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 36899999999 9999999986 5999999999886554
No 339
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.42 E-value=0.00016 Score=72.68 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=35.9
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~ 50 (369)
....++|+|||||++|++||+.|. +|++|+|+|+++.+|..
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 345789999999999999999996 69999999999988754
No 340
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.00015 Score=71.23 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=39.3
Q ss_pred CCCcEEeCCceeeccCCCeEEecccCCcc--c-c----chhHHHHHHHHHHHHHHHHHhh
Q 046865 251 TDGMLMVDENLRVKGQKNIFAIGDITDIR--E-I----KQGFLAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--~-~----~~~~~A~~~g~~~a~~i~~~~~ 303 (369)
..|.|.||.+.|+++.|++||+|+|++.. . - .....+.-.|++|+++++..+.
T Consensus 345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 345 YMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred ecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999974599999999997521 1 0 1234677889999999887654
No 341
>PRK11445 putative oxidoreductase; Provisional
Probab=97.37 E-value=0.0019 Score=59.66 Aligned_cols=95 Identities=23% Similarity=0.233 Sum_probs=64.7
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--c-------cCCc-----------------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--E-------FIGP----------------------------- 179 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~-------~~~~----------------------------- 179 (369)
+|+|||+|+.|+-+|..|++ . .+|+++++.+... + .+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 68999999999999998874 3 7899999765210 0 0000
Q ss_pred ------------c---h-HHHHHHH---HHhCCcEEEeCceeeeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCC
Q 046865 180 ------------K---A-GDKTLDW---LISKKVDVKLGQRVNLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPV 235 (369)
Q Consensus 180 ------------~---~-~~~~~~~---l~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p 235 (369)
. + ...+.+. ..+.|++++.++.+..++.+++...+.+ .+|+ ++++|.||.|+|...
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 0 0 1111122 2346899999999998876666666664 4564 689999999999864
No 342
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.36 E-value=0.00018 Score=70.55 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=31.2
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
..+||||||+|.|||+||.+++ .|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4689999999999999999886 599999999988
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.36 E-value=0.00016 Score=69.52 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=41.0
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCC--CC---e-EEEcCCC---cEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GS---D-TYLTSTG---DTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~---~-~v~~~~g---~~i~~d~vi~a~G~~ 234 (369)
-+.+.+.+.++++|++|+++++|++++.++ +. + .+.+.+| +++.+|.||+|++..
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 456778899999999999999999997643 21 2 2234433 468999999999853
No 344
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.00019 Score=70.84 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=38.8
Q ss_pred CCCcEEeCCceeecc-----CCCeEEecccCCcc-c------cchhHHHHHHHHHHHHHHHHHhh
Q 046865 251 TDGMLMVDENLRVKG-----QKNIFAIGDITDIR-E------IKQGFLAQKHAQVAAKNLKVLMV 303 (369)
Q Consensus 251 ~~g~i~vd~~l~~~~-----~~~i~a~GD~~~~~-~------~~~~~~A~~~g~~~a~~i~~~~~ 303 (369)
..|.|.||.+.||.+ .|++||+|+|++.. . -.....|.-.|++|+++++..+.
T Consensus 351 t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 351 TMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred eCCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999832 89999999997521 1 01234577889999999887654
No 345
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.33 E-value=0.00072 Score=66.65 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=64.5
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCcee-e
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRV-N 203 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v-~ 203 (369)
...++|+|+|+|++|+.+|..++. .|.+|+++++.+.+.. .++.+..+.-.+.+++.|++++.++.+ .
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~ 212 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE 212 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence 456899999999999999999874 4889999998765421 123345555556778899999999876 3
Q ss_pred eccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
.+..+. + ...+|.|++|+|..+
T Consensus 213 ~~~~~~------~----~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 213 DITLEQ------L----EGEFDAVFVAIGAQL 234 (564)
T ss_pred cCCHHH------H----HhhCCEEEEeeCCCC
Confidence 322110 1 124799999999864
No 346
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.31 E-value=0.00022 Score=70.61 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=31.0
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
..+||||||||.||++||.+++ .|.+|+||||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 4689999999999999999886 5899999999753
No 347
>PRK06126 hypothetical protein; Provisional
Probab=97.31 E-value=0.0015 Score=64.17 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEc---CCCc--EEeccEEEEcCCCC
Q 046865 184 KTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLT---STGD--TIKADCHFLCTGKP 234 (369)
Q Consensus 184 ~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~i~~d~vi~a~G~~ 234 (369)
.+.+.+++ .++++++++++.+++.+++.+.+++ .+|+ ++.+|.||.|.|..
T Consensus 131 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~ 187 (545)
T PRK06126 131 ILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGAR 187 (545)
T ss_pred HHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcc
Confidence 33444444 4899999999999887666555554 3454 68999999999974
No 348
>PRK13984 putative oxidoreductase; Provisional
Probab=97.31 E-value=0.00061 Score=67.78 Aligned_cols=90 Identities=29% Similarity=0.309 Sum_probs=65.6
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
...++++|||+|+.|+..|..|.+ .|.+|+++++.+.... ..+.++.....+.+++.|++++.++.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 358 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK 358 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence 346789999999999999999985 4899999998775421 12334455556778889999999988742
Q ss_pred ccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
. +..++ ...++|.||+|||..
T Consensus 359 ~--------~~~~~-~~~~yD~vilAtGa~ 379 (604)
T PRK13984 359 D--------IPLEE-LREKHDAVFLSTGFT 379 (604)
T ss_pred c--------CCHHH-HHhcCCEEEEEcCcC
Confidence 1 11111 135799999999976
No 349
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.31 E-value=0.00018 Score=71.31 Aligned_cols=45 Identities=20% Similarity=0.145 Sum_probs=36.2
Q ss_pred CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
++++| +.|++||+|||++.....++..+..+|++++.++...+..
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccc-CCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 89998 6999999999986433346677888999999999877654
No 350
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00027 Score=69.66 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=33.6
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||||||+|.||++||..++ .|.+|+|+||.+..+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 4689999999999999999875 6999999999987654
No 351
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.30 E-value=0.0017 Score=63.21 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=64.7
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------------------cc---CC------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------------EF---IG------------------ 178 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------------------~~---~~------------------ 178 (369)
.++|+|+|+.|+++|..++. .+.+|.++++..... .. ++
T Consensus 2 DViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred eEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 48999999999999999884 488899888652110 00 00
Q ss_pred ----c------------chHHHHHHHHHhC-CcEEEeCceeeeccCC-C-CCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 179 ----P------------KAGDKTLDWLISK-KVDVKLGQRVNLDSVS-E-GSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 179 ----~------------~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~-~-~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+ .+...+++.+++. +++++.++ +..+..+ + ....|.+.+|..+.|+.||+|||.-.
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~-Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGE-VEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeE-EEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 1 1223455666666 78888764 4444332 3 34567788888999999999999863
No 352
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.30 E-value=0.00022 Score=71.20 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=39.1
Q ss_pred CCcEEeCCceeeccCCCeEEecccCCccc---c----chhHHHHHHHHHHHHHHHHHhhC
Q 046865 252 DGMLMVDENLRVKGQKNIFAIGDITDIRE---I----KQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~---~----~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
-|.|.||.+.||.+.|++||+|+|++... - .....+.-.|++++++++..+.+
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47799999999845999999999975211 0 12245777899999998876643
No 353
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.30 E-value=0.00024 Score=70.55 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=31.3
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
..+||||||||.||++||.+++ .|.+|+||||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 3679999999999999999986 5899999999864
No 354
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.29 E-value=0.00056 Score=65.98 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=56.2
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeee--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINIT-- 88 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (369)
..+++|||||+.|+.+|..|+ .|.+|+|+++...+. ..++.........+.. .+++++.+. +..+.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------~~d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~ 249 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------GFDQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI 249 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc--------ccCHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence 458999999999999999886 599999999742111 0111111100000111 245554332 22222
Q ss_pred -cc-eEEecCC---eEEeccEEEEccCCCCCCCC
Q 046865 89 -EN-EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 89 -~~-~v~~~~g---~~~~~d~lviAtG~~~~~p~ 117 (369)
.. .+...++ .++.+|.+++|+|..|+...
T Consensus 250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 11 3444444 47999999999999988654
No 355
>PTZ00058 glutathione reductase; Provisional
Probab=97.28 E-value=0.00056 Score=66.89 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=57.7
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN 90 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (369)
..+|+|||||+.|+.+|..|+ .|.+|+|+++.+.+... .++...........+ .+++++.+ .+..++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-------~d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~ 307 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-------FDETIINELENDMKK--NNINIITHANVEEIEKV 307 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-------CCHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence 579999999999999999886 59999999998754310 111111000000111 14444332 23333321
Q ss_pred -----eEEecC-CeEEeccEEEEccCCCCCCCC
Q 046865 91 -----EVLTAE-GRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 91 -----~v~~~~-g~~~~~d~lviAtG~~~~~p~ 117 (369)
.+...+ ++++.+|.+++|+|..|+...
T Consensus 308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred CCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 122223 457999999999999987654
No 356
>PRK14727 putative mercuric reductase; Provisional
Probab=97.28 E-value=0.00068 Score=65.45 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=56.5
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee--
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT-- 88 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (369)
..+|+|||||+.|+.+|..|+ .|.+|+||++...+. . .++.........+. ..+++++.+ .+..+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----~----~d~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~ 257 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----R----EDPLLGETLTACFE--KEGIEVLNNTQASLVEHD 257 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----c----chHHHHHHHHHHHH--hCCCEEEcCcEEEEEEEe
Confidence 468999999999999999886 599999999753211 0 11111100000000 124555432 333332
Q ss_pred cc--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 89 ~~--~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
.. .+...+ .++.+|.+++|+|..|+...
T Consensus 258 ~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 258 DNGFVLTTGH-GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred CCEEEEEEcC-CeEEeCEEEEccCCCCCccC
Confidence 12 233334 36899999999999987654
No 357
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.27 E-value=0.00029 Score=69.05 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~ 50 (369)
...+||||||+| +|++||..++ .|.+|+||||.+.+|..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 457999999999 8999998876 59999999999887754
No 358
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.27 E-value=0.00027 Score=69.39 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=33.4
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||||||+|.+|++||.+++ .|.+|+|||+.+..+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3689999999999999999986 5999999999876554
No 359
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00023 Score=65.60 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.7
Q ss_pred CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
+.|+|+..+++|.+|-+.+.... ..|..||.+|+-|....-.+++
T Consensus 381 ~sLeTkkV~GLF~AGQINGTTGY---EEAAAQGIiAGiNA~~~a~~~~ 425 (679)
T KOG2311|consen 381 PSLETKKVQGLFFAGQINGTTGY---EEAAAQGIIAGINASLRASGKP 425 (679)
T ss_pred hhhhhhhccceEEeeeecCccch---HHHHhhhhHhhhhhhhhhcCCC
Confidence 45788889999999999876432 4688899999999875545543
No 360
>PRK13748 putative mercuric reductase; Provisional
Probab=97.27 E-value=0.0023 Score=63.13 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=63.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------------------c---cC---Ccc-hH
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------------E---FI---GPK-AG 182 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------------------~---~~---~~~-~~ 182 (369)
-.++|||+|+.|+..|..+++ .|.+|.++++.. +. + .. .+. ..
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVE--QGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 579999999999999999885 489999999762 10 0 00 000 01
Q ss_pred HH----------------HHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCch
Q 046865 183 DK----------------TLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 183 ~~----------------~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~ 238 (369)
+. ..+.+++. +|+++.+. +..+ +...+.+.+.+|+ ++++|.+|+|||.+|..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 247 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFK--DDQTLIVRLNDGGERVVAFDRCLIATGASPAVP 247 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 11 11223443 78888774 3333 3345666666663 699999999999998654
No 361
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0033 Score=52.45 Aligned_cols=101 Identities=22% Similarity=0.168 Sum_probs=70.0
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--------c--------ccccc-----CCcchHHHHHHHHHhCCc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--------S--------RLLEF-----IGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--------~--------~~l~~-----~~~~~~~~~~~~l~~~gv 194 (369)
..+++|||+||.+.-.|.++++. ..+-.+++-. . .-.|. ..+++.+.+++..++.|-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 35799999999999888777642 2222232211 0 01233 346888999999999999
Q ss_pred EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhh
Q 046865 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240 (369)
Q Consensus 195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l 240 (369)
+|++.+ |.+++......++.++. +.+.+|.||+|||.....-.+
T Consensus 86 ~i~tEt-Vskv~~sskpF~l~td~-~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 86 EIITET-VSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKRLHL 129 (322)
T ss_pred eeeeee-hhhccccCCCeEEEecC-CceeeeeEEEecccceeeeec
Confidence 998874 66777666677776644 479999999999987544333
No 362
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.25 E-value=0.00066 Score=65.27 Aligned_cols=95 Identities=20% Similarity=0.330 Sum_probs=56.6
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeec-
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITE- 89 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 89 (369)
.++++|||||+.|+.+|..|+ .|.+|+++++.+.+... .++...........+ . ++++. ..+..++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~~--~-I~i~~~~~v~~i~~~ 238 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-------EDPEVSKQAQKILSK--E-FKIKLGAKVTSVEKS 238 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------hhHHHHHHHHHHHhh--c-cEEEcCCEEEEEEEc
Confidence 579999999999999999886 59999999998764311 111110000000000 1 33321 22233321
Q ss_pred --ceEE--e--cCCeEEeccEEEEccCCCCCCCC
Q 046865 90 --NEVL--T--AEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 90 --~~v~--~--~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
..+. . .++.++.+|.+++|+|..|+.+.
T Consensus 239 ~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 239 GDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred CCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 1232 1 23357999999999999998774
No 363
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.25 E-value=0.00028 Score=70.16 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=30.7
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
.+||||||+|.||++||.+++ .|.+|+||||...
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 579999999999999999986 5899999999864
No 364
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.25 E-value=0.00025 Score=72.31 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=29.9
Q ss_pred ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY 46 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~ 46 (369)
++|+|||||+||+++|..|++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 489999999999999999864 799999999875
No 365
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.25 E-value=0.00028 Score=68.97 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.4
Q ss_pred CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~ 46 (369)
..+||||||+|.||++||.+++.+.+|+||||...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCC
Confidence 45899999999999999999976689999999864
No 366
>PRK02106 choline dehydrogenase; Validated
Probab=97.25 E-value=0.00031 Score=69.23 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=32.5
Q ss_pred CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCC
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY 46 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~ 46 (369)
+...+|+||||||.+|+.+|.+|+. +++|+|||+++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 3456899999999999999999964 899999999864
No 367
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.22 E-value=0.003 Score=59.28 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=64.3
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-ccc-----------cc---------------------c-------C
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRL-----------LE---------------------F-------I 177 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~-----------l~---------------------~-------~ 177 (369)
+|+|||+|+.|+-+|..|++ .|.+|.++++. ++. +. . +
T Consensus 2 DVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTI 79 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeecc
Confidence 58999999999999999884 48899999876 210 00 0 0
Q ss_pred C--c---------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC------C--cEEeccEEEEcCCCC
Q 046865 178 G--P---------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST------G--DTIKADCHFLCTGKP 234 (369)
Q Consensus 178 ~--~---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~i~~d~vi~a~G~~ 234 (369)
+ . .+-+.+.+.+.+.|++++.+ .++.+..+++.+.+++.+ | .++.+|.||.|.|..
T Consensus 80 ~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 80 PSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGAN 154 (388)
T ss_pred CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence 0 0 12234555566789999765 577776666666665542 2 379999999999964
No 368
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.00031 Score=69.31 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=30.7
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
.+||||||+|.|||+||.+++ .|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 579999999999999999986 5999999999854
No 369
>PRK08275 putative oxidoreductase; Provisional
Probab=97.21 E-value=0.00027 Score=69.39 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=39.3
Q ss_pred CcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 253 GMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 253 g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
|.|.||.+++| +.|++||+|||+..+ ......|.-.|+.++.++...+.+
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999998 799999999997533 123456778899999998876654
No 370
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.21 E-value=0.00033 Score=63.72 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=31.2
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~ 47 (369)
+.+|||||||.+|+++|..|. +|++|+|+|+.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 579999999999999999996 69999999997643
No 371
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.19 E-value=0.0011 Score=62.03 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
+|+|||||..|+|+|..|++ .|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccccc
Confidence 68999999999999999985 49999999987654
No 372
>PRK12839 hypothetical protein; Provisional
Probab=97.19 E-value=0.00043 Score=68.11 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=33.6
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||||||+|.+|++||..++ +|.+|+||||++.++.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4689999999999999999886 5899999999877654
No 373
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.18 E-value=0.0041 Score=58.42 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=65.9
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--c----------------c----------------------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--E----------------F---------------------- 176 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~----------------~---------------------- 176 (369)
.+|+|||+|+.|+-+|..|++ .|.+|+++++.+... . .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 579999999999999999885 488999999765210 0 0
Q ss_pred -------CC-------------cchHHHHHHHHHhCCcEEEeCceeeeccC-CCCCeEEEcC-CCc--EEeccEEEEcCC
Q 046865 177 -------IG-------------PKAGDKTLDWLISKKVDVKLGQRVNLDSV-SEGSDTYLTS-TGD--TIKADCHFLCTG 232 (369)
Q Consensus 177 -------~~-------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~i~~d~vi~a~G 232 (369)
++ +.+...+.+.+.+.|++++.+..+..+.. +++...|++. +|+ ++++|+||-|-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence 00 01123344555567888888877665532 3344556664 675 689999999999
Q ss_pred CCC
Q 046865 233 KPV 235 (369)
Q Consensus 233 ~~p 235 (369)
...
T Consensus 161 ~~S 163 (390)
T TIGR02360 161 FHG 163 (390)
T ss_pred Cch
Confidence 754
No 374
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.14 E-value=0.0013 Score=61.70 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCeE---EE-cCCCc--EE---eccEEEEcCCCCC
Q 046865 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSDT---YL-TSTGD--TI---KADCHFLCTGKPV 235 (369)
Q Consensus 179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~~---v~-~~~g~--~i---~~d~vi~a~G~~p 235 (369)
+.+...+.+.|+++||++..+++|+.+..+ ++..+ +. ..+|+ +| +-|.|++..|.-.
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 478899999999999999999999987643 22221 22 24453 23 4799999999753
No 375
>PLN02815 L-aspartate oxidase
Probab=97.13 E-value=0.00051 Score=67.69 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=30.5
Q ss_pred CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~ 47 (369)
..+||||||+|.|||+||.+++. | +|+||||.+..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 35799999999999999999874 7 99999998753
No 376
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.13 E-value=0.0011 Score=67.48 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.1
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~ 170 (369)
..+++|+|||+||.|+++|..|+. .|.+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 356899999999999999999984 59999999975
No 377
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.12 E-value=0.0015 Score=55.78 Aligned_cols=97 Identities=24% Similarity=0.253 Sum_probs=62.6
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe----C----ceeeecc-CC
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL----G----QRVNLDS-VS 208 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~----~----~~v~~i~-~~ 208 (369)
.++|||||..|+.+|..|+..+|..+|.+++.++-+-+- .--+.+-+++++-.|+=-. + +-+.++. .+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc
Confidence 368999999999999999988899999999887643221 1112233334433332100 0 1111111 12
Q ss_pred CCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 209 EGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 209 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
.....+.+.+|+++.++.+.+|+|++|-.
T Consensus 78 s~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cccceEEecCCceeeEEEEEEecCCCcce
Confidence 23446788999999999999999999853
No 378
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.12 E-value=0.0039 Score=57.08 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=72.1
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--ccC---------CcchHHHHHHHHHhC--CcEEEeCce
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI---------GPKAGDKTLDWLISK--KVDVKLGQR 201 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~---------~~~~~~~~~~~l~~~--gv~i~~~~~ 201 (369)
..++++|+|+|-.|+.+...|- ....+|++|.+.+.++ |.+ -+.+.+.+....++. +++++...
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ld--ts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe- 130 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLD--TSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE- 130 (491)
T ss_pred CCceEEEEcCchHHHHHHHhcc--ccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc-
Confidence 4689999999999999988875 3468999999887653 222 356788888887766 56666543
Q ss_pred eeeccCCCCCeEEE--cCCC----cEEeccEEEEcCCCCCCch
Q 046865 202 VNLDSVSEGSDTYL--TSTG----DTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 202 v~~i~~~~~~~~v~--~~~g----~~i~~d~vi~a~G~~p~~~ 238 (369)
-..++.+.+.+.+. +.++ -.+.+|.+|+|+|..||+-
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 33455555544443 3444 3689999999999998874
No 379
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00023 Score=68.20 Aligned_cols=71 Identities=14% Similarity=0.005 Sum_probs=54.2
Q ss_pred CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 162 KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 162 ~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
..-+|+.+.+..+. +..+...+....++.|+.|+.++.|+.+....+ ...|.+..| .|++..+|-|+|...
T Consensus 172 v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred heeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 45567776665432 235778888899999999999999998875433 446778777 699999999999854
No 380
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.11 E-value=0.00043 Score=68.29 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=33.2
Q ss_pred CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865 259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
.+.+| +.|++||+|||++.....++..+.-+|.+++.++...+..
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred cCCcc-ccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence 55566 7999999999976433345666777899999888876643
No 381
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.10 E-value=0.0011 Score=62.82 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=68.9
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 205 (369)
..++|.|||+||.|+..|..|++ .+..|+++++.+... | .++.++.+...+.|++.|++|++++++-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-
Confidence 45899999999999999999984 599999999887653 2 24668889999999999999999988742
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
. +++++ -.-++|.|++++|..
T Consensus 199 -----~--it~~~-L~~e~Dav~l~~G~~ 219 (457)
T COG0493 199 -----D--ITLEE-LLKEYDAVFLATGAG 219 (457)
T ss_pred -----c--CCHHH-HHHhhCEEEEecccc
Confidence 0 11111 122459999999974
No 382
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.10 E-value=0.00047 Score=66.74 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=34.0
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~ 51 (369)
+||+|||+|++|+.+|+.|. +|++|++||++...+..|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 69999999999999999986 699999999998877544
No 383
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.09 E-value=0.00052 Score=65.18 Aligned_cols=94 Identities=31% Similarity=0.361 Sum_probs=25.5
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc------------------------------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------------------------------------ 175 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~------------------------------------------ 175 (369)
.|+|||||+.|+-.|...++ .|.+|.|+++.+.+..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 48999999999999988874 4999999999864310
Q ss_pred -------cCCc-chHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcC--CC-cEEeccEEEEcCCC
Q 046865 176 -------FIGP-KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTS--TG-DTIKADCHFLCTGK 233 (369)
Q Consensus 176 -------~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~--~g-~~i~~d~vi~a~G~ 233 (369)
.+++ .+...+.+.+++.|+++++++.+..+..+++.+ .|++. +| .++.++.+|-|||.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0111 112234556667899999999999988776432 33333 23 57999999999995
No 384
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.09 E-value=0.00052 Score=61.72 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=31.2
Q ss_pred CCCcceEEEECCChHHHHHHHHccc-CCcEEEEcCC
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK 44 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~ 44 (369)
.....||+|||||.+|-+.|+.|.+ |.+|.+|||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3456899999999999999999975 9999999985
No 385
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.08 E-value=0.00057 Score=66.47 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=30.6
Q ss_pred CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~ 46 (369)
...||||||+|.||++||.+++ +.+|+||||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa-~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA-PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC-cCCEEEEECCCC
Confidence 4689999999999999999987 679999999864
No 386
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.08 E-value=0.00066 Score=59.57 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=65.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--ccC---CcchHHH-----HHHHHHhCCcEEEeCceeeec
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI---GPKAGDK-----TLDWLISKKVDVKLGQRVNLD 205 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~---~~~~~~~-----~~~~l~~~gv~i~~~~~v~~i 205 (369)
--.++|+|||.-|+-+|..+.++.+.-+|.++++.+.-. |.+ ...+... -+..+--.|.+.+. .+|.+.
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f 117 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF 117 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence 457999999999999999999877778999999876421 111 0001000 00111112222222 345555
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLK 241 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~ 241 (369)
..+. -+|.+.+|++|.+|.+|+|+|..-+.+.+.
T Consensus 118 ~P~~--N~v~t~gg~eIsYdylviA~Giql~y~~Ik 151 (446)
T KOG3851|consen 118 NPDK--NTVVTRGGEEISYDYLVIAMGIQLDYGKIK 151 (446)
T ss_pred CCCc--CeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence 4433 467888999999999999999976655443
No 387
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.07 E-value=0.0049 Score=61.16 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=31.5
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
....+|+|||||+.|+-+|..|++ .|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 456789999999999999999985 489999999864
No 388
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.05 E-value=0.00063 Score=66.26 Aligned_cols=37 Identities=32% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
...++||||||||.|||.||.+++ .|.+|+|+||...
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 445789999999999999999986 6899999999764
No 389
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.04 E-value=0.00051 Score=67.79 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=39.9
Q ss_pred CCCcEEeCCceeeccCCCeEEecccCCccc-------cchhHHHHHHHHHHHHHHHHHhhC
Q 046865 251 TDGMLMVDENLRVKGQKNIFAIGDITDIRE-------IKQGFLAQKHAQVAAKNLKVLMVG 304 (369)
Q Consensus 251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~-------~~~~~~A~~~g~~~a~~i~~~~~g 304 (369)
..|.|.||.+.|+ +.|++||+|+|++... -.....|.-.|++|+++++..+.+
T Consensus 357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 357 TMGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred eCCCEEECCCCcc-ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3588999999998 6999999999974211 112345777899999999876643
No 390
>PLN02785 Protein HOTHEAD
Probab=97.01 E-value=0.00079 Score=66.26 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=32.5
Q ss_pred CCcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~ 46 (369)
...||+||||||.||+.+|.+|..+.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 346999999999999999999987899999999863
No 391
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.99 E-value=0.0029 Score=58.82 Aligned_cols=83 Identities=24% Similarity=0.202 Sum_probs=63.0
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCcc------hHHHHHHHHHhCCcEEEeCce
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGPK------AGDKTLDWLISKKVDVKLGQR 201 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~~------~~~~~~~~l~~~gv~i~~~~~ 201 (369)
..++++|||||..|++.|.+|++ .|.+|+|+++.+.+... |+.. +...+.+.-...+|++++.++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence 36899999999999999999996 49999999998876432 2221 334455555567899999999
Q ss_pred eeeccCCCCCeEEEcCCC
Q 046865 202 VNLDSVSEGSDTYLTSTG 219 (369)
Q Consensus 202 v~~i~~~~~~~~v~~~~g 219 (369)
|++++..-+.++|+....
T Consensus 201 V~ev~G~vGnF~vki~kk 218 (622)
T COG1148 201 VEEVSGSVGNFTVKIEKK 218 (622)
T ss_pred eeeecccccceEEEEecc
Confidence 999987666677766544
No 392
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.98 E-value=0.00081 Score=61.38 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcccc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEIT 50 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~ 50 (369)
...++|+|+|||.+||++|++|++ ...|+|+|..+..|..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 346899999999999999999964 5667889999988854
No 393
>PLN03000 amine oxidase
Probab=96.97 E-value=0.00084 Score=67.86 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=35.5
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~ 51 (369)
..++|+|||||++|+.||..|+ .|++|+|+|+++..|...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 4689999999999999999997 499999999999888543
No 394
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.96 E-value=0.0044 Score=53.41 Aligned_cols=99 Identities=25% Similarity=0.289 Sum_probs=67.5
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc----------C----------C-------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------I----------G------------------- 178 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~----------~----------~------------------- 178 (369)
+|+|||+|..|+-.|..|+. .|.+|++++++..+... + +
T Consensus 3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 68999999999999999985 49999999987322100 0 0
Q ss_pred ------------------------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-cEEeccEEEEcCCC
Q 046865 179 ------------------------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-DTIKADCHFLCTGK 233 (369)
Q Consensus 179 ------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~ 233 (369)
+.++ .+.+.| ....++.++++|+++...++.-++.+++| +...+|.|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgms-alak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchH-HHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence 1111 122222 23467788888888877777778888665 57889999999765
Q ss_pred CCCchhh
Q 046865 234 PVGSDWL 240 (369)
Q Consensus 234 ~p~~~~l 240 (369)
.....+|
T Consensus 159 PQ~~~LL 165 (331)
T COG3380 159 PQTATLL 165 (331)
T ss_pred Ccchhhc
Confidence 4333343
No 395
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.94 E-value=0.00078 Score=71.75 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=32.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
..+||||||+|.||++||.+++ .|.+|+|+||.+..+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 4689999999999999999876 699999999987654
No 396
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0022 Score=65.15 Aligned_cols=90 Identities=17% Similarity=0.275 Sum_probs=69.7
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNL 204 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 204 (369)
..+++|.|||+||.|+-.|..|.+ .|..|++++|++++.. .+|+.+.+.-.+.|.+.||++++|+.|-.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence 346999999999999999999984 5999999999998632 24666777777889999999999987742
Q ss_pred ccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
- +. -|+-.-+.|.+|+|+|..
T Consensus 1861 ~--------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1861 H--------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred c--------cc-HHHHhhccCeEEEEeCCC
Confidence 1 11 122234678999999975
No 397
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.92 E-value=0.0029 Score=62.97 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=31.2
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
..+|+|||||+.|+..|..|. .|.+|+|||+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 468999999999999998876 599999999987643
No 398
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.002 Score=57.36 Aligned_cols=99 Identities=29% Similarity=0.294 Sum_probs=74.1
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEE-cC-c---------ccc---ccCCcchHHHHHHHHHhCCcEEEeC
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH-KG-S---------RLL---EFIGPKAGDKTLDWLISKKVDVKLG 199 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~-~~-~---------~~l---~~~~~~~~~~~~~~l~~~gv~i~~~ 199 (369)
+.+-.++||||||.|...|-+-+ +.|.+.-++. |- . .+. ....|++...++++.++..|+++..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaA--RKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAA--RKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHH--hhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 45678999999999988887655 3355544432 11 0 111 1356789999999999999999988
Q ss_pred ceeeeccCC---CCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 200 QRVNLDSVS---EGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 200 ~~v~~i~~~---~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
.+.+.++.. ++-..+++.+|..+.+..+|++||.+
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 887777653 34578999999999999999999965
No 399
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.90 E-value=0.0094 Score=56.12 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=27.7
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
+|+|||+||.|+-+|..+++ .|.+|.++++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS--AGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 68999999999999999884 488999998763
No 400
>PLN02546 glutathione reductase
Probab=96.89 E-value=0.002 Score=63.04 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=57.0
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee-
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT- 88 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 88 (369)
...+|+|||||+.|+..|..|. .+.+|+|+++.+.+... .++.........+. ..+++++.+ .+..+.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-------~d~~~~~~l~~~L~--~~GV~i~~~~~v~~i~~ 321 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-------FDEEVRDFVAEQMS--LRGIEFHTEESPQAIIK 321 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-------cCHHHHHHHHHHHH--HCCcEEEeCCEEEEEEE
Confidence 3579999999999999998886 58999999987653211 11111000000000 124555432 233332
Q ss_pred --cc--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865 89 --EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (369)
Q Consensus 89 --~~--~v~~~~g~~~~~d~lviAtG~~~~~p~ 117 (369)
.. .+...++....+|.+++|+|..|+...
T Consensus 322 ~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~ 354 (558)
T PLN02546 322 SADGSLSLKTNKGTVEGFSHVMFATGRKPNTKN 354 (558)
T ss_pred cCCCEEEEEECCeEEEecCEEEEeeccccCCCc
Confidence 11 233334444558999999999987653
No 401
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=96.89 E-value=7.4e-05 Score=56.54 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=38.6
Q ss_pred CCcEEEEeecCCCce--------EEcCcc-----cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865 316 HSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369 (369)
Q Consensus 316 ~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~ 369 (369)
+|+++.+|+++.++. ...++. ...+...+++|+ ++++++++|||+|++|.||
T Consensus 8 ~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~t~~IlGa~~vg~~a 72 (110)
T PF02852_consen 8 DPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKL--IFDKKTGRILGAQIVGPNA 72 (110)
T ss_dssp SSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEE--EEETTTTBEEEEEEEETTH
T ss_pred CCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEE--EEEeeccceeeeeeecCch
Confidence 689999999876653 222221 144557899999 9999999999999999764
No 402
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.012 Score=55.05 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=29.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~ 173 (369)
.+|+|||+|++|+.+|..|.+..... .|+++++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 47999999999999999998643333 38999887544
No 403
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.82 E-value=0.0014 Score=64.67 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=33.4
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
..+||||||+|.+|++||..++ .|.+|+||||++..+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 4689999999999999999886 5999999999877654
No 404
>PLN02976 amine oxidase
Probab=96.77 E-value=0.0014 Score=69.06 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.1
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~ 51 (369)
..++|+|||||++|+++|+.|. .|++|+|+|+++.+|..+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 4589999999999999999996 599999999998887543
No 405
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0015 Score=63.82 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEcCCC---c-EEeccEEEEcCCCCCCchhhccccc
Q 046865 183 DKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLTSTG---D-TIKADCHFLCTGKPVGSDWLKDTIL 245 (369)
Q Consensus 183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~-~i~~d~vi~a~G~~p~~~~l~~~~~ 245 (369)
..+...++..++++.+++.+.++..+++. +.+...++ + ...++.||+|+|...+..+|..++.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 34444567778999999999998876653 23333333 1 3578899999999876666666654
No 406
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.72 E-value=0.016 Score=55.41 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=60.7
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------------cc--C-------------------------
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EF--I------------------------- 177 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------------~~--~------------------------- 177 (369)
-+|+|||||+.|.-+|..|++ .|.+|.++++.+... .. .
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 479999999999999988874 488888888763210 00 0
Q ss_pred ------------C-cchHHHHHHHHHhCCcEEEeCceeeeccCC---CCCeEEEcCC-------C--cEEeccEEEEcCC
Q 046865 178 ------------G-PKAGDKTLDWLISKKVDVKLGQRVNLDSVS---EGSDTYLTST-------G--DTIKADCHFLCTG 232 (369)
Q Consensus 178 ------------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~~~~v~~~~-------g--~~i~~d~vi~a~G 232 (369)
+ ..+-+.+.+.+.+.|++++.++ +..++.. ++.+.+++.+ | .++++|.||-|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~-v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGL-FTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEece-EEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 0 0122345556677899998764 5555421 2334444321 3 4799999999999
Q ss_pred CC
Q 046865 233 KP 234 (369)
Q Consensus 233 ~~ 234 (369)
..
T Consensus 197 ~~ 198 (450)
T PLN00093 197 AN 198 (450)
T ss_pred cc
Confidence 63
No 407
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.0059 Score=57.82 Aligned_cols=94 Identities=24% Similarity=0.241 Sum_probs=62.4
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------------------------------------------c
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------------------------------------------L 174 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------------------------------------------l 174 (369)
-.|+|||||..|+|.|..-+ +.|.++.+++....- |
T Consensus 5 ~DVIVIGgGHAG~EAA~AaA--RmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAA--RMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CceEEECCCccchHHHHhhh--ccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 46899999999999998766 568888877754111 0
Q ss_pred cc------------CCc-chHHHHHHHHHh-CCcEEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCCC
Q 046865 175 EF------------IGP-KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 175 ~~------------~~~-~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
.. .|. .....+++.++. .++.++.++ |.++..+++ ...|.+.+|..+.|+.||++||.
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 011 123334445543 477777664 444444343 36788999999999999999986
No 408
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.71 E-value=0.0011 Score=65.59 Aligned_cols=50 Identities=18% Similarity=0.023 Sum_probs=37.2
Q ss_pred CCcEEeCCceeeccCCCeEEecccCCccc--c----chhHHHHHHHHHHHHHHHHHh
Q 046865 252 DGMLMVDENLRVKGQKNIFAIGDITDIRE--I----KQGFLAQKHAQVAAKNLKVLM 302 (369)
Q Consensus 252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~----~~~~~A~~~g~~~a~~i~~~~ 302 (369)
.|.|.+|...+| +.|++||+|+|++... - .....+.-.|+.|+++++..+
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998 6999999999975321 0 122456778888988887654
No 409
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.61 E-value=0.00058 Score=56.31 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.9
Q ss_pred cceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCc
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYF 47 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~ 47 (369)
..||||||+|.+||+||+.+. .+.+|.+||.+-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 359999999999999999885 38999999987443
No 410
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.49 E-value=0.018 Score=48.34 Aligned_cols=99 Identities=20% Similarity=0.127 Sum_probs=61.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------C-------------------------------
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I------------------------------- 177 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~------------------------------- 177 (369)
...++|+|+|++|+-+|..|++. +.+|.+++++..+... |
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d 94 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD 94 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence 46799999999999999999975 9999999987433210 0
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEc------CCC-----cEEeccEEEEcCCCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLT------STG-----DTIKADCHFLCTGKPVG 236 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~------~~g-----~~i~~d~vi~a~G~~p~ 236 (369)
..++...+....-+.|++++..+.|+++-..+ +.+. +.. ..| -.+++..||-|||....
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 01233344444555899999999998765444 3221 111 122 27899999999998654
No 411
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.48 E-value=0.0025 Score=62.44 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcC-CCc---EEeccEEEEcCCCCCCchhhcccccC
Q 046865 184 KTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTS-TGD---TIKADCHFLCTGKPVGSDWLKDTILK 246 (369)
Q Consensus 184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~-~g~---~i~~d~vi~a~G~~p~~~~l~~~~~~ 246 (369)
.+....++.|++|++++.|.+|..+++ ...|++. ++. .+.++.||+|.|.--...+|..++++
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 344444467899999999999876544 2234432 222 35899999999975455666655553
No 412
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.46 E-value=0.0036 Score=55.44 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=31.3
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
...||+|||+|.|||.||.+|+ .|.+|+++|++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 3689999999999999999987 6999999998753
No 413
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.42 E-value=0.025 Score=56.54 Aligned_cols=98 Identities=27% Similarity=0.414 Sum_probs=66.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----------------------------------CC--
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------------------------------IG-- 178 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----------------------------------~~-- 178 (369)
.-+|+|||+|++|+-+|..|++ +.|.+|+++++.+..... ..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar-~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSA-FPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhc-CCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 4579999999999999999984 248888888876321000 00
Q ss_pred ------------------------------cchHHHHHHHHHhCC--cEEEeCceeeeccCCC---CCeEEEcC------
Q 046865 179 ------------------------------PKAGDKTLDWLISKK--VDVKLGQRVNLDSVSE---GSDTYLTS------ 217 (369)
Q Consensus 179 ------------------------------~~~~~~~~~~l~~~g--v~i~~~~~v~~i~~~~---~~~~v~~~------ 217 (369)
..+.+.+.+.+++.+ +++..+++++.++.++ ..+++++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 012333455565555 5778899998887543 23666653
Q ss_pred CC--cEEeccEEEEcCCCC
Q 046865 218 TG--DTIKADCHFLCTGKP 234 (369)
Q Consensus 218 ~g--~~i~~d~vi~a~G~~ 234 (369)
+| +++++|+||-|-|.+
T Consensus 191 ~g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGAR 209 (634)
T ss_pred CCceEEEEeCEEEECCCCc
Confidence 35 479999999999974
No 414
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.38 E-value=0.006 Score=55.62 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=64.5
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHH--------------------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT-------------------------------- 185 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~-------------------------------- 185 (369)
..+|+|+|..+.-....+..+-++.+|.++...+++ |.+-|.+++.+
T Consensus 180 p~liigggtaAfaa~rai~s~da~A~vl~iseepel-PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff 258 (659)
T KOG1346|consen 180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL-PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF 258 (659)
T ss_pred ceeEEcCCchhhhcccccccCCCCceEEeeccCccC-cccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence 468999997766555555544456677777655432 32222222222
Q ss_pred -----HHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865 186 -----LDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS 237 (369)
Q Consensus 186 -----~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 237 (369)
......-||-+..+.+|..+..++ ..|++.||.+|.+|.+++|||.+|..
T Consensus 259 vspeDLp~~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 259 VSPEDLPKAVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred eChhHCcccccCceEEEeccceEEeeccc--CeEEecCCcEeehhheeeecCcCccc
Confidence 112233588899999988876544 35788999999999999999999854
No 415
>PLN02985 squalene monooxygenase
Probab=96.38 E-value=0.034 Score=54.09 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=26.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~ 170 (369)
..+++|||+|+.|+-+|..|++ .|.+|+++++.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~ 75 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAK--DGRRVHVIERD 75 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHH--cCCeEEEEECc
Confidence 3578999999999999988874 47888888875
No 416
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.34 E-value=0.015 Score=59.47 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~ 172 (369)
+|+|||+|+.|+-+|..|++..++.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 68999999999999998886445899999998764
No 417
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.33 E-value=0.0034 Score=56.60 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=59.9
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT 88 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (369)
.-+++++|||||+-||..+.--. .|.+||+||--+.++.. +++++... +.+... -.+..|..+ .+...+
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-------mD~Eisk~-~qr~L~-kQgikF~l~tkv~~a~ 279 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-------MDGEISKA-FQRVLQ-KQGIKFKLGTKVTSAT 279 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-------cCHHHHHH-HHHHHH-hcCceeEeccEEEEee
Confidence 34689999999999999986554 59999999987766532 12211110 000000 023444322 222222
Q ss_pred cc-----eEEec-----CCeEEeccEEEEccCCCCCCCCChH
Q 046865 89 EN-----EVLTA-----EGRRVVYDYLVIATGHKDPVPKTRT 120 (369)
Q Consensus 89 ~~-----~v~~~-----~g~~~~~d~lviAtG~~~~~p~~~~ 120 (369)
++ .+.+. ..+++++|.|.+++|.+|...++..
T Consensus 280 ~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgl 321 (506)
T KOG1335|consen 280 RNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGL 321 (506)
T ss_pred ccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCCh
Confidence 11 22222 1257999999999999998877643
No 418
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.27 E-value=0.0048 Score=59.62 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCc
Q 046865 10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF 47 (369)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~ 47 (369)
....||.||||||.||...|.+|+. .++|+|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3457999999999999999999985 5999999998654
No 419
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.23 E-value=0.028 Score=53.24 Aligned_cols=33 Identities=42% Similarity=0.659 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~ 172 (369)
.|+|||+|..|+-.|..+++ .|.+|.++++.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecc
Confidence 48999999999999999886 4889999999875
No 420
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.13 E-value=0.0026 Score=59.86 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=33.1
Q ss_pred CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (369)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~ 48 (369)
...+||+|||||..|..||.-++ +|+++.|+|+++.-.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~S 103 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFAS 103 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccC
Confidence 34599999999999999998775 899999999998644
No 421
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.00 E-value=0.014 Score=39.64 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=28.1
Q ss_pred EEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc
Q 046865 141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE 175 (369)
Q Consensus 141 vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~ 175 (369)
|||+|.+|+-+|..|++. +.+|+++++.+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCc
Confidence 799999999999999864 899999999987643
No 422
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.99 E-value=0.035 Score=53.22 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=58.7
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY 214 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v 214 (369)
..++++|+|+|.+|..+|..|.+ .|.+|+++++.+. +.+ +...+.+.+.|++++.+.....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~---------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE---------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh----------
Confidence 35889999999999999999985 4999999987642 122 3333456777888766543320
Q ss_pred EcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865 215 LTSTGDTIKADCHFLCTGKPVGSDWLK 241 (369)
Q Consensus 215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~ 241 (369)
..-.+|.||.++|..|+.+.+.
T Consensus 65 -----~~~~~d~vv~~~g~~~~~~~~~ 86 (450)
T PRK14106 65 -----FLEGVDLVVVSPGVPLDSPPVV 86 (450)
T ss_pred -----HhhcCCEEEECCCCCCCCHHHH
Confidence 0124799999999988776553
No 423
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.98 E-value=0.0055 Score=56.47 Aligned_cols=55 Identities=5% Similarity=-0.078 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
.++..+.+-+++.|-+|.++..|.+|-.+++ .+.|.+.||+++.+..|+.-++..
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 7888999999999999999999999877665 467889999999998888877654
No 424
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.98 E-value=0.029 Score=51.93 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=51.7
Q ss_pred EEcCcccccc--CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-cEEeccEEEEcCCCCC
Q 046865 167 VHKGSRLLEF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-DTIKADCHFLCTGKPV 235 (369)
Q Consensus 167 v~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~~p 235 (369)
.++..++.|. -..++.+.+.+.+++.||+|+++++|..++ ++...+.+.++ .++.+|.||+|||-.+
T Consensus 72 ~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 72 VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 4556677773 344788999999999999999999999982 33456665433 4699999999999754
No 425
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.01 Score=57.40 Aligned_cols=34 Identities=41% Similarity=0.561 Sum_probs=29.9
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
..++|+|||+|.+|+++|..|+ +|++|+++|+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3568999999999999998886 699999999765
No 426
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.84 E-value=0.082 Score=52.39 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=35.6
Q ss_pred hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE----EEcCCCc--EEeccEEEEcCCC
Q 046865 181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT----YLTSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~----v~~~~g~--~i~~d~vi~a~G~ 233 (369)
+...+.+.+.+ .+|+++.++.+.++..+++.+. +...+|+ .+.++.||+|||-
T Consensus 135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 44445555544 3799999999888765544322 2345663 6889999999985
No 427
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.82 E-value=0.009 Score=54.54 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=28.9
Q ss_pred cceEEEECCChHHHHHHHHccc-----CCcEEEEcCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPK 44 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~-----g~~V~lie~~ 44 (369)
.+||||||||+.|++.|..|.. .++|.|+|-.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 7999999999999999999862 6899999987
No 428
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.03 Score=52.14 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=26.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~ 170 (369)
-.|+|||||..|+|.|.+-+ +.|.+.++++.+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaa--R~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAA--RLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHH--hcCCceEEeecc
Confidence 47999999999999998766 458887777654
No 429
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.73 E-value=0.011 Score=55.68 Aligned_cols=57 Identities=12% Similarity=-0.061 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKPVG 236 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~p~ 236 (369)
++.+.+-+...-.|-.+.+++.|.++..++++ ..-...+|+++.|+.||....+-|+
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~ 290 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPE 290 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGC
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcc
Confidence 78888888888889999999999998764333 2212357889999999988777663
No 430
>PRK07121 hypothetical protein; Validated
Probab=95.73 E-value=0.1 Score=50.70 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc-CCCc--EEec-cEEEEcCCC
Q 046865 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT-STGD--TIKA-DCHFLCTGK 233 (369)
Q Consensus 180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-~~g~--~i~~-d~vi~a~G~ 233 (369)
.+.+.+.+.+++.|++++++++++++..++ +.+ .+.. .+++ .+.+ +.||+|||-
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 456677778888999999999999886543 222 2332 2333 5778 999999994
No 431
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.062 Score=48.75 Aligned_cols=88 Identities=18% Similarity=0.090 Sum_probs=62.3
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------c--CCcchHHHHHHHHHhCCcEEEeCceee-ec
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------F--IGPKAGDKTLDWLISKKVDVKLGQRVN-LD 205 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------~--~~~~~~~~~~~~l~~~gv~i~~~~~v~-~i 205 (369)
.++.|||+||.|+-.|.-|.++.++..|+++++.+.... . .-+-+.+.+.+.++.....++.|..|- .+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~dv 100 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDV 100 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecccc
Confidence 389999999999999999887667899999999875432 1 122345667778888888888887762 22
Q ss_pred cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865 206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
. +.+ -+-.+|.|++|.|..
T Consensus 101 s---------l~e-L~~~ydavvLaYGa~ 119 (468)
T KOG1800|consen 101 S---------LKE-LTDNYDAVVLAYGAD 119 (468)
T ss_pred c---------HHH-HhhcccEEEEEecCC
Confidence 1 110 023578888888864
No 432
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.55 E-value=0.02 Score=56.97 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.6
Q ss_pred cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY 46 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~ 46 (369)
.+||||||||.||++||.+++. |.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 5799999999999999999864 899999999764
No 433
>PTZ00367 squalene epoxidase; Provisional
Probab=95.53 E-value=0.11 Score=51.25 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=29.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
.-+|+|||||+.|+-+|..|++ .|.+|+++++.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 3479999999999999999985 488999999864
No 434
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.51 E-value=0.019 Score=53.74 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p 235 (369)
+..+...+.+.+++ |++++.++.|..++.+++.+.+++.+|+.+.+|.||+|+|...
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 34777888888888 9999999999998766666778888887799999999999753
No 435
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.50 E-value=0.074 Score=48.86 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
.+|+|+|||..|+-.|..|.+ .|.+|.+++...
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecc
Confidence 579999999999999999984 589999998764
No 436
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.39 E-value=0.059 Score=49.30 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=28.6
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
++|.|||.|+.||..|.-|+ .|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 47999999999999998886 589999999865
No 437
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.38 E-value=0.0082 Score=52.17 Aligned_cols=41 Identities=34% Similarity=0.567 Sum_probs=33.5
Q ss_pred cCCCcceEEEECCChHHHHHHHHccc-------CCcEEEEcCCCCccc
Q 046865 9 SEGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEI 49 (369)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~l~~-------g~~V~lie~~~~~~~ 49 (369)
++...++|+|||||..|.++|+.|.+ ...|+|+|+...-+.
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 34456899999999999999999962 278999999876553
No 438
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.24 E-value=0.12 Score=48.72 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=34.6
Q ss_pred hHHHHHHHHHh-CCcEEEeCceeeeccCCCC-Ce-EEEc--CCC--cEEeccEEEEcCCC
Q 046865 181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG-SD-TYLT--STG--DTIKADCHFLCTGK 233 (369)
Q Consensus 181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~-~~-~v~~--~~g--~~i~~d~vi~a~G~ 233 (369)
+...+.+..++ .+|+++.++.+.++..+++ .+ .+.+ .++ .++.++.||+|||-
T Consensus 135 I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 135 IMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 34444555544 5899999988877766655 33 3333 222 46889999999984
No 439
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.22 E-value=0.045 Score=50.24 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l 174 (369)
.|+|||||+.|+-+|..|++ .|.+|+++++.+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHh--cccccccchhccccc
Confidence 58999999999999999985 489999999987654
No 440
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.03 E-value=0.044 Score=50.30 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=56.2
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-------ccc-------C-------C------------------
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-------LEF-------I-------G------------------ 178 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-------l~~-------~-------~------------------ 178 (369)
.++.||.||..+-+|..+.+. ...++.++++.+.+ ++. + +
T Consensus 4 D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~ 82 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY 82 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred eEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence 578999999999999988764 36788888876543 110 0 0
Q ss_pred ------------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC----eEEEcC----CCcEEeccEEEEcCCCCCCch
Q 046865 179 ------------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS----DTYLTS----TGDTIKADCHFLCTGKPVGSD 238 (369)
Q Consensus 179 ------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~----~~v~~~----~g~~i~~d~vi~a~G~~p~~~ 238 (369)
.++.++++-..++..-.+..+++|+.|+..++. ..|.+. +++++.|+.|++++|..|..+
T Consensus 83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 122233333333445448889999998765432 566662 346899999999999887654
No 441
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.02 E-value=0.054 Score=49.54 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCC
Q 046865 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKP 234 (369)
Q Consensus 178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~ 234 (369)
+..+...+.+.+++.|++++.+++|..++.+++.+ .+.+.+| ++.+|.||+|+|..
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence 45788889999999999999999999988765543 4566666 79999999999965
No 442
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.029 Score=48.22 Aligned_cols=32 Identities=38% Similarity=0.634 Sum_probs=29.3
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
++++|||+|..|.+.|..|. .|++|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 47999999999999999996 589999999975
No 443
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.85 E-value=0.14 Score=43.36 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=51.2
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY 214 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v 214 (369)
..++++|||||.+|..-+..|.+ .|.+|+++.+.. .+.+.+..++.+++++.+..-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~----------~~~l~~l~~~~~i~~~~~~~~------------ 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEEL----------ESELTLLAEQGGITWLARCFD------------ 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCC----------CHHHHHHHHcCCEEEEeCCCC------------
Confidence 35799999999999999988885 489999997532 234444444445665543211
Q ss_pred EcCCCcEEeccEEEEcCCCC-CCchh
Q 046865 215 LTSTGDTIKADCHFLCTGKP-VGSDW 239 (369)
Q Consensus 215 ~~~~g~~i~~d~vi~a~G~~-p~~~~ 239 (369)
.+.--.+++||.|||.. .|...
T Consensus 64 ---~~dl~~~~lVi~at~d~~ln~~i 86 (205)
T TIGR01470 64 ---ADILEGAFLVIAATDDEELNRRV 86 (205)
T ss_pred ---HHHhCCcEEEEECCCCHHHHHHH
Confidence 01112478999999986 44443
No 444
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.83 E-value=0.032 Score=41.47 Aligned_cols=34 Identities=44% Similarity=0.625 Sum_probs=28.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
..++|+|||||..|..-+..|. .|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4679999999999999998875 599999999864
No 445
>PRK05868 hypothetical protein; Validated
Probab=94.80 E-value=0.055 Score=50.43 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=38.4
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv 194 (369)
++|+|+|||+.|+-+|..|++ .|.+|+++++.+.+... ..-.+.....+.|++.|+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl 58 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGL 58 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCC
Confidence 479999999999999999984 48999999998765321 111222333455555553
No 446
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.72 E-value=0.045 Score=51.28 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.6
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
++|+|||||++|+|+|..|++ .|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCcc
Confidence 579999999999999999985 49999999976554
No 447
>PRK06184 hypothetical protein; Provisional
Probab=94.69 E-value=0.066 Score=52.11 Aligned_cols=56 Identities=30% Similarity=0.363 Sum_probs=39.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv 194 (369)
-+|+|||+|++|+-+|..|++ .|.+|+++++.+.+... -...+.....+.|++.|+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl 60 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGV 60 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCc
Confidence 469999999999999999984 49999999998765331 111233344445555554
No 448
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.67 E-value=0.072 Score=50.21 Aligned_cols=56 Identities=30% Similarity=0.315 Sum_probs=40.1
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv 194 (369)
++|+|||||+.|+-+|..|++ .|.+|+++++.+.+.. ...-.+.....+.|++.|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl 59 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV 59 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC
Confidence 689999999999999999974 5899999999875432 1111233455555666554
No 449
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.66 E-value=0.07 Score=50.07 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=44.2
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-cccccc-CCcchHHHHHHHHHhCCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEF-IGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~l~~-~~~~~~~~~~~~l~~~gv 194 (369)
.+|+|+|||+.|+-+|..|++ .|.+|+++++. +.+.+. -.-.+.....+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 579999999999999999984 58999999998 344332 233566777788888887
No 450
>PRK06847 hypothetical protein; Provisional
Probab=94.62 E-value=0.084 Score=49.18 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=31.4
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
..+|+|||+|+.|+-+|..|++ .|.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence 5689999999999999999984 48999999988653
No 451
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.61 E-value=0.04 Score=44.49 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=28.3
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
+|.|||||..|.++|..|+ +|.+|+|..+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 5899999999999999986 689999999975
No 452
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.49 E-value=0.077 Score=49.86 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=31.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
+.+|+|||+|+.|+-+|..|++ .|.+|+++++.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCccc
Confidence 5689999999999999999984 58999999998754
No 453
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.48 E-value=0.094 Score=50.95 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.8
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~ 49 (369)
+||||||||.+||++|..|+ +|++|+|+||++..|.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 58999999999999999987 5999999999988764
No 454
>PRK08244 hypothetical protein; Provisional
Probab=94.45 E-value=0.075 Score=51.59 Aligned_cols=35 Identities=31% Similarity=0.628 Sum_probs=30.7
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
..|+|||+|++|+-+|..|.+ .|.+|+++++.+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 369999999999999999984 49999999998654
No 455
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.40 E-value=0.056 Score=45.72 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=29.1
Q ss_pred cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
.++|+|||||..|...+..|. .|.+|+||+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 569999999999999998875 699999999864
No 456
>PRK08275 putative oxidoreductase; Provisional
Probab=94.33 E-value=0.081 Score=52.14 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=30.7
Q ss_pred CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY 46 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~ 46 (369)
..+||||||||.||++||.++++ |.+|+||||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 45899999999999999998863 689999999864
No 457
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.29 E-value=0.062 Score=51.45 Aligned_cols=34 Identities=35% Similarity=0.544 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGS 171 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~ 171 (369)
+|+|||||+.|.-.|..|++..+. .+|+++++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 589999999999999999987655 8999999875
No 458
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.20 E-value=0.11 Score=48.69 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=30.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
.+|+|||+|+.|+-+|..|++ .|.+|+++++.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCCC
Confidence 479999999999999999984 48999999997643
No 459
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.18 E-value=0.073 Score=42.90 Aligned_cols=33 Identities=42% Similarity=0.561 Sum_probs=28.5
Q ss_pred CcceEEEECCChHHHHHHHHc-ccCCcEEEEcCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPK 44 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l-~~g~~V~lie~~ 44 (369)
..++|+|||||..|..-+..| ..|.+|+||++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 467999999999999999877 469999999754
No 460
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.18 E-value=0.076 Score=50.19 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=34.3
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l 174 (369)
.+++|||||.+|+-.|..|.++.|..+++++++++++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 47999999999999999999988889999999987763
No 461
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.04 E-value=0.23 Score=41.93 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=47.4
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY 214 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v 214 (369)
..++++|||||.+|...+..|.+ .+.+|+++.+. ..+.+.+.+....+.+... .
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~----------~~~~l~~l~~~~~i~~~~~----~---------- 62 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPE----------LTENLVKLVEEGKIRWKQK----E---------- 62 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCC----------CCHHHHHHHhCCCEEEEec----C----------
Confidence 46899999999999999988875 37899999642 2334444444434444211 0
Q ss_pred EcCCCcEEeccEEEEcCCCCC
Q 046865 215 LTSTGDTIKADCHFLCTGKPV 235 (369)
Q Consensus 215 ~~~~g~~i~~d~vi~a~G~~p 235 (369)
+....--.+|+||.||+..-
T Consensus 63 -~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 63 -FEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred -CChhhcCCceEEEEcCCCHH
Confidence 01111235799999988754
No 462
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.99 E-value=0.13 Score=48.59 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=39.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC-C--cchHHHHHHHHHhCCc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-G--PKAGDKTLDWLISKKV 194 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-~--~~~~~~~~~~l~~~gv 194 (369)
..+|+|||||+.|+-+|..|++ .|.+|+++++.+..-... + -.+.....+.|++.|+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl 77 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGV 77 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCCh
Confidence 3579999999999999999984 499999999987542110 1 1233344455555554
No 463
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.94 E-value=0.72 Score=41.64 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC
Q 046865 182 GDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE 259 (369)
Q Consensus 182 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~ 259 (369)
....++.|.+.+|+++.+..- + .+++.+.|...+|+ .+.+..+++|+|-+|..+-+....+ ..|++|++...+
T Consensus 113 ngIY~~~L~k~~V~~i~G~a~--f-~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~--gidSDgff~Lee 187 (478)
T KOG0405|consen 113 NGIYKRNLAKAAVKLIEGRAR--F-VSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAEL--GIDSDGFFDLEE 187 (478)
T ss_pred HHHHHhhccccceeEEeeeEE--E-cCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhh--ccccccccchhh
Confidence 344566677788888877431 1 13456677777774 3789999999999987764433333 456677665543
No 464
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.92 E-value=0.15 Score=47.55 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCccc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRL 173 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~ 173 (369)
.|+|||+|+.|+-+|..|++ .| .+|+++++.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCcc
Confidence 48999999999999999984 58 999999998654
No 465
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.87 E-value=0.14 Score=48.30 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~ 172 (369)
+|+|||||+.|+-+|..|++..++.+|+++++.+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 58999999999999999985323589999999865
No 466
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.78 E-value=0.064 Score=44.55 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=25.3
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
++|.|||.|+.|+..|..|+ .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 58999999999999999886 6999999998764
No 467
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.06 Score=47.88 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=36.7
Q ss_pred eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865 257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER 306 (369)
Q Consensus 257 vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~ 306 (369)
.|+.+|.++.||+|++|-+++.-.. ..+...|-+++.|.++...|..
T Consensus 325 L~~tl~lk~~p~l~fAGQitG~EGY---veSaA~Gllag~naa~~~~g~~ 371 (439)
T COG1206 325 LDPTLQLKKRPNLFFAGQITGVEGY---VESAASGLLAGINAARLALGEE 371 (439)
T ss_pred hhHHhhcccCCCcEEeeeeecchhh---hHHhhhhHHHhhHHHHHhcCCC
Confidence 4667888889999999999876431 3455678899999988887765
No 468
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=93.73 E-value=0.11 Score=47.85 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=36.4
Q ss_pred hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (369)
Q Consensus 134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l 174 (369)
....+++|+|||.+|+-+|..|+.+.+...|++++.++|+.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 34678999999999999999999888888999999998864
No 469
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.69 E-value=0.1 Score=49.03 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=31.3
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~ 172 (369)
+|+|||||.+|+-+|..|+++.++.+|+++++.+.
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 69999999999999999997666899999999753
No 470
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.54 Score=41.87 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=28.7
Q ss_pred hcCCeEEEEcCCh-hHHHHHHHHhhhCCCCeEEEEEc
Q 046865 134 KSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHK 169 (369)
Q Consensus 134 ~~~~~v~vvG~G~-~g~e~a~~l~~~~~~~~v~lv~~ 169 (369)
..+++++|+|.|. .|--++..|.. .+..|+++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~--~gatVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLN--ANATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh--CCCEEEEEeC
Confidence 4678999999996 99999998874 3779999986
No 471
>PRK07538 hypothetical protein; Provisional
Probab=93.67 E-value=0.13 Score=48.65 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l 174 (369)
+|+|||||+.|+-+|..|++ .|.+|+++++.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELR 36 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCccc
Confidence 68999999999999999885 489999999987543
No 472
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.62 E-value=0.1 Score=44.03 Aligned_cols=33 Identities=39% Similarity=0.711 Sum_probs=28.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~ 44 (369)
..++|+|||||-.|...+..|. .|.+|+||++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999998775 68999999875
No 473
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=93.61 E-value=0.44 Score=43.55 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=26.7
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~ 170 (369)
-.++|||+|..|.-+|..|.+ .|.+|++++|+
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERD 77 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAK--DGRRVHVIERD 77 (509)
T ss_pred ccEEEECCcchHHHHHHHHhh--CCcEEEEEecc
Confidence 458889999999999998884 48889999886
No 474
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.57 E-value=0.2 Score=46.06 Aligned_cols=35 Identities=37% Similarity=0.694 Sum_probs=30.4
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
..++|||+|+.|+.+|...++ .|.+|+++++.+.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~ 38 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKL 38 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccc
Confidence 468999999999999998874 59999999998654
No 475
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.53 E-value=0.077 Score=51.02 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
+|.|||.|.+|+++|+.|. +|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 5899999999999998885 6999999998764
No 476
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=93.51 E-value=0.47 Score=41.71 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCc-chHHHHHHHHHhCCcEEE
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGP-KAGDKTLDWLISKKVDVK 197 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~-~~~~~~~~~l~~~gv~i~ 197 (369)
..+++|||+|+.|+-+|..+++ .+.+|.++++.+.+... ++. .+.....+.+++.|+.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 3579999999999999999874 58999999987654321 111 233455677777887654
No 477
>PRK09126 hypothetical protein; Provisional
Probab=93.51 E-value=0.16 Score=47.54 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=40.0
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccCC-c--chHHHHHHHHHhCCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIG-P--KAGDKTLDWLISKKV 194 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~~-~--~~~~~~~~~l~~~gv 194 (369)
-+|+|||||+.|+-+|..|++ .|.+|+++++.+..- +... . .+.....+.|++.|+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl 65 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA 65 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence 469999999999999999985 499999999987531 1111 1 234455666777665
No 478
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.097 Score=50.17 Aligned_cols=34 Identities=50% Similarity=0.738 Sum_probs=30.3
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
+.++|+|+|+|..|+++|..|. .|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578999999999999999886 699999999975
No 479
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.42 E-value=0.072 Score=44.08 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=0.0
Q ss_pred eEEEECCChHHHHHHHHccc-CCcEEEEcCCC
Q 046865 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (369)
Q Consensus 15 ~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~ 45 (369)
+|.|||+|..|...|..+.. |++|+|+|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
No 480
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.39 E-value=0.14 Score=45.03 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=29.8
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCc
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGS 171 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~ 171 (369)
...+|+|+|.|.+|.++|..|+. .| .++++++...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCE
Confidence 46789999999999999999984 35 6899998764
No 481
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.35 E-value=0.13 Score=49.24 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l 174 (369)
++++|||||.+|+-+|..|++...+.+|++++.++++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999998642348999999987653
No 482
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.35 E-value=0.085 Score=49.74 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~ 233 (369)
+.......+...|.+|+++++|++|+.+++.+.+.+.+|+++++|.||+|+..
T Consensus 211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPP 263 (450)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-H
T ss_pred hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCch
Confidence 34444455555677999999999999888889999999999999999999875
No 483
>PRK06185 hypothetical protein; Provisional
Probab=93.28 E-value=0.18 Score=47.51 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=39.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV 194 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv 194 (369)
..+|+|||||++|+-+|..|++ .|.+|+++++.+..... ....+.....+.|++.|+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~ 63 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGL 63 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCccccCceeChhHHHHHHHcCC
Confidence 3579999999999999999985 48999999987643211 112333344555555554
No 484
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.26 E-value=0.42 Score=47.06 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=36.5
Q ss_pred chHHHHHHHHHh-CCcEEEeCceeeeccCCC--CC-eEEE-cCCCc--EEeccEEEEcCCC
Q 046865 180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSE--GS-DTYL-TSTGD--TIKADCHFLCTGK 233 (369)
Q Consensus 180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~--~~-~~v~-~~~g~--~i~~d~vi~a~G~ 233 (369)
.+...+.+.+++ .||++++++.+.++..++ +. ..+. ..+|+ .+.++.||+|||-
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 456666666654 489999999998876542 32 2222 23554 4789999999995
No 485
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.25 E-value=0.44 Score=45.80 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=57.4
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS 217 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~ 217 (369)
++.|+|.|.+|+..|..|.+ .|.+|+++++.+.. . .....+.|++.|++++.+..... + .+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~------~-~~~~~~~l~~~gi~~~~g~~~~~-~----~~~~~-- 65 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP------E-LLERQQELEQEGITVKLGKPLEL-E----SFQPW-- 65 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch------h-hHHHHHHHHHcCCEEEECCccch-h----hhhHH--
Confidence 58999999999999888874 48999999876532 1 22334457778999987753311 0 00000
Q ss_pred CCcEEeccEEEEcCCCCCCchhhc
Q 046865 218 TGDTIKADCHFLCTGKPVGSDWLK 241 (369)
Q Consensus 218 ~g~~i~~d~vi~a~G~~p~~~~l~ 241 (369)
.-.+|.||.+.|..++.+.+.
T Consensus 66 ---~~~~d~vv~s~gi~~~~~~~~ 86 (459)
T PRK02705 66 ---LDQPDLVVVSPGIPWDHPTLV 86 (459)
T ss_pred ---hhcCCEEEECCCCCCCCHHHH
Confidence 124689999999988776554
No 486
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=0.098 Score=47.88 Aligned_cols=45 Identities=33% Similarity=0.552 Sum_probs=37.2
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA 56 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~ 56 (369)
..+||||||.|.-=-..|.+.+ .|.+|+=+|+++|+|..|..+..
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSm 52 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSM 52 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceee
Confidence 4699999999998766666654 59999999999999998876543
No 487
>PRK08013 oxidoreductase; Provisional
Probab=93.23 E-value=0.21 Score=47.01 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.3
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~ 172 (369)
.+|+|||+|+.|+-+|..|++ .|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 479999999999999999984 5999999999875
No 488
>PRK07588 hypothetical protein; Provisional
Probab=93.20 E-value=0.15 Score=47.83 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
+|+|||||+.|+-+|..|++ .|.+|+++++.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHH--CCCceEEEeCCCCc
Confidence 68999999999999999985 48999999998754
No 489
>PRK07045 putative monooxygenase; Reviewed
Probab=93.14 E-value=0.19 Score=47.14 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=31.1
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
.+|+|||||+.|+-+|..|++ .|.+|+++++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence 479999999999999999985 49999999998765
No 490
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.05 E-value=0.24 Score=46.75 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=29.3
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
.+|+|||+|+.|+-+|..|.+ .|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 369999999999999999974 589999999876
No 491
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=92.98 E-value=0.26 Score=45.99 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCcc
Confidence 48999999999999999984 48999999998753
No 492
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=92.94 E-value=0.2 Score=49.20 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=31.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l 174 (369)
..+|+|||+|++|+-+|..|.+ .|.+|+++++.+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLY 46 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence 4579999999999999999985 499999999987543
No 493
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.89 E-value=0.4 Score=43.13 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=29.1
Q ss_pred ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (369)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~ 46 (369)
++|.|||+|.=|-+.|..|. .|++|.+.-+++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence 58999999999999999987 4799999998754
No 494
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.47 Score=45.41 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL 215 (369)
Q Consensus 136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~ 215 (369)
.++++|+|+|.+|...|..|.+ .|.+|++.++.... .....+.+++.|+++..+.....+
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~~~~--------~~~~~~~l~~~g~~~~~~~~~~~~---------- 64 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGKPFS--------ENPEAQELLEEGIKVICGSHPLEL---------- 64 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCCCcc--------chhHHHHHHhcCCEEEeCCCCHHH----------
Confidence 5789999999999999998884 48999998755311 112234567778888655322111
Q ss_pred cCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865 216 TSTGDTIKADCHFLCTGKPVGSDWLKD 242 (369)
Q Consensus 216 ~~~g~~i~~d~vi~a~G~~p~~~~l~~ 242 (369)
+.. .+|.||.+.|..++.+.+..
T Consensus 65 ~~~----~~d~vV~s~gi~~~~~~~~~ 87 (447)
T PRK02472 65 LDE----DFDLMVKNPGIPYTNPMVEK 87 (447)
T ss_pred hcC----cCCEEEECCCCCCCCHHHHH
Confidence 000 37899999998877665543
No 495
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.83 E-value=0.39 Score=37.59 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865 135 SARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT 213 (369)
Q Consensus 135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 213 (369)
..++++|+|+|-+|-..+..|... +.+ |+++.|.. +-.+.+.+.+....+++..-......
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~--------~ra~~l~~~~~~~~~~~~~~~~~~~~-------- 72 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTP--------ERAEALAEEFGGVNIEAIPLEDLEEA-------- 72 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSH--------HHHHHHHHHHTGCSEEEEEGGGHCHH--------
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCH--------HHHHHHHHHcCccccceeeHHHHHHH--------
Q ss_pred EEcCCCcEEeccEEEEcCCC
Q 046865 214 YLTSTGDTIKADCHFLCTGK 233 (369)
Q Consensus 214 v~~~~g~~i~~d~vi~a~G~ 233 (369)
.-.+|.+|.||+.
T Consensus 73 -------~~~~DivI~aT~~ 85 (135)
T PF01488_consen 73 -------LQEADIVINATPS 85 (135)
T ss_dssp -------HHTESEEEE-SST
T ss_pred -------HhhCCeEEEecCC
No 496
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=92.82 E-value=0.27 Score=45.96 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
.+|+|||||+.|+-+|..|.+ .|.+|+++++.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence 479999999999999999984 48999999998764
No 497
>PRK07190 hypothetical protein; Provisional
Probab=92.81 E-value=0.22 Score=48.23 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.5
Q ss_pred CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (369)
Q Consensus 137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~ 173 (369)
..|+|||+|++|+-+|..|++ .|.+|.++++.+..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence 479999999999999998874 49999999998754
No 498
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.79 E-value=0.16 Score=49.05 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=30.8
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
.++|||||.+|+-+|..|+++.++.+|+++++.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 5899999999999999999866899999999854
No 499
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.72 E-value=0.28 Score=45.78 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (369)
Q Consensus 138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~ 171 (369)
+|+|||||+.|+-+|..|++ .|.+|+++++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ--KGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc--CCCeEEEecCCC
Confidence 58999999999999999974 589999999863
No 500
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.67 E-value=0.14 Score=41.84 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=27.8
Q ss_pred CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (369)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~ 45 (369)
.+.+|+|+|+|.+|..|+..|. .|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3579999999999999999886 599999999864
Done!