BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046867
(588 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 108/178 (60%), Gaps = 4/178 (2%)
Query: 332 IFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLN 388
+FVR E R+D+ + +I G TPY +G F FDV+FP DYP+ PP V+ + G +R N
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159
Query: 389 PNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDS 448
PNLYN GKVCLS+LNTW G EKW P S+ LQVLVS+Q+LIL PYFNEPG+E
Sbjct: 160 PNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRG 219
Query: 449 MEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYM 505
G + S Y+ ++K L +R P F + + HFY + +I A C+ ++
Sbjct: 220 TPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFYLKRVEIXAQCEEWI 277
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 15/144 (10%)
Query: 310 SNKLVKRIQEEWKILENDLPDTIF---VRVYESRMDLLR--AVIVGAEGTPYHDGLFFFD 364
S+ ++R+QEE K D P + V+ + MDL + A I G EGT + G++
Sbjct: 4 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 63
Query: 365 VFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVL 424
V +P++YP+ PP V + +G +PN+Y G +CLS+LN +++ W P++ T+ Q++
Sbjct: 64 VEYPNEYPSKPPKVKFPAG--FYHPNVYPSGTICLSILN-----EDQDWRPAI-TLKQIV 115
Query: 425 VSIQALILNERPY--FNEPGWESM 446
+ +Q L+ + P EP W S
Sbjct: 116 LGVQDLLDSPNPNSPAQEPAWRSF 139
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 15/144 (10%)
Query: 310 SNKLVKRIQEEWKILENDLPDTIF---VRVYESRMDLLR--AVIVGAEGTPYHDGLFFFD 364
S+ ++R+QEE K D P + V+ + MDL + A I G EGT + G++
Sbjct: 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 61
Query: 365 VFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVL 424
V +P++YP+ PP V + +G +PN+Y G +CLS+LN +++ W P++ T+ Q++
Sbjct: 62 VEYPNEYPSKPPKVKFPAG--FYHPNVYPSGTICLSILN-----EDQDWRPAI-TLKQIV 113
Query: 425 VSIQALILNERPY--FNEPGWESM 446
+ +Q L+ + P EP W S
Sbjct: 114 LGVQDLLDSPNPNSPAQEPAWRSF 137
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G E +PY G+FF ++ FPSDYP
Sbjct: 23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V++ + +PN+ + G +CL +L ++W P++ T+ +VL+SI +L+ +
Sbjct: 83 KPPKVNFTTK--IYHPNINSQGAICLDIL-------KDQWSPAL-TISKVLLSISSLLTD 132
Query: 434 ERP 436
P
Sbjct: 133 PNP 135
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRIQ+E + L+ D P + +A I+G +PY G+FF + FP+DYP
Sbjct: 8 LKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 68 KPPKVAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCD 117
Query: 434 ERP 436
P
Sbjct: 118 PNP 120
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
+R+ ++K L+ D P + E+ + AVI G EGTP+ DG F + F +YPN
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
PP V + S +PN+Y G +CL +L +W P+ + +L SIQ+L+
Sbjct: 67 PPTVRFLSK--MFHPNVYADGSICLDILQN-------RWSPTYD-VSSILTSIQSLL 113
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 16/149 (10%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
KR+ ++K L+ D P I ++ + L AVI G + TP+ G F + F DYPN
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNE 434
PP V + S +PN+Y G +CL +L +W P + + +L SIQ+L+ +
Sbjct: 67 PPTVRFVSR--MFHPNIYADGSICLDILQN-------QWSP-IYDVAAILTSIQSLLCDP 116
Query: 435 RPYFNEPG-WESMDSMEEGERQSNMYNER 462
P N P E+ E +R+ YN R
Sbjct: 117 NP--NSPANSEAARMYSESKRE---YNRR 140
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 306 LEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDV 365
L P +KRI +E L D P M +A I+G +PY G+FF +
Sbjct: 3 LGSPEFMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI 62
Query: 366 FFPSDYPNVPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVL 424
FP+DYP PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL
Sbjct: 63 HFPTDYPFKPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVL 111
Query: 425 VSIQALILNERP 436
+SI +L+ + P
Sbjct: 112 LSICSLLCDPNP 123
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPS 369
S+ +KRIQ+E + L D P + +A I+G +PY G+FF + FP+
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61
Query: 370 DYPNVPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI
Sbjct: 62 DYPFKPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSIC 110
Query: 429 ALILNERP 436
+L+ + P
Sbjct: 111 SLLCDPNP 118
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
KRI +E LE D P + + +A I+G +PY G+FF + FP+DYP
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNE 434
PP + + + +PN+ G +CL +L ++W P++ T+ +VL+SI +L+ +
Sbjct: 65 PPKISFTTK--IYHPNINANGNICLDIL-------KDQWSPAL-TLSKVLLSICSLLTDA 114
Query: 435 RP 436
P
Sbjct: 115 NP 116
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPS 369
S + R++ E +L + P I + +MD LRA I+G TPY G+F +V P
Sbjct: 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61
Query: 370 DYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQA 429
YP PP + + + +PN+ + G++CL +L W PS++ + VL SIQ
Sbjct: 62 RYPFEPPQIRFLTPI--YHPNIDSAGRICLDVLKL---PPKGAWRPSLN-IATVLTSIQL 115
Query: 430 LILNERP 436
L+ P
Sbjct: 116 LMSEPNP 122
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
++RIQ+E + ++ D P + A I G + +PY GLFF DV FP DYP
Sbjct: 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
P V + + +PN+ G +CL +L ++W P++ T+ +VL+SI +L+ +
Sbjct: 66 KAPRVTFMTKV--YHPNINKNGVICLDIL-------KDQWSPAL-TLSRVLLSISSLLTD 115
Query: 434 ERP 436
P
Sbjct: 116 PNP 118
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI E L D P + + +A I+G +PY G+FF + FP+DYP
Sbjct: 3 LKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V++ + R+ +PN+ + G +CL +L ++W P++ T+ +VL+SI +L+
Sbjct: 63 KPPKVNFTT---RIYHPNINSNGSICLDIL-------RDQWSPAL-TISKVLLSISSLLT 111
Query: 433 NERP 436
+ P
Sbjct: 112 DPNP 115
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
L KRI +E + L +D I ++ + + I G E +PY DG+F +++ P DYP
Sbjct: 6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
P V + + +PN+ G++CL +L T W P++ + VL+SIQAL+
Sbjct: 66 MEAPKVRFLTKI--YHPNIDRLGRICLDVLKT-------NWSPALQ-IRTVLLSIQALLA 115
Query: 433 NERP 436
+ P
Sbjct: 116 SPNP 119
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 8 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 68 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 116
Query: 433 NERP 436
+ P
Sbjct: 117 DPNP 120
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
+R+ ++K ++ D P + + + A+I+G TPY DG F + F +YPN
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNE 434
PP+V + S +PN+Y G++CL +L +W P+ + +L SIQ+L
Sbjct: 67 PPHVKFLSE--MFHPNVYANGEICLDILQN-------RWTPTYD-VASILTSIQSL---- 112
Query: 435 RPYFNEPG 442
FN+P
Sbjct: 113 ---FNDPN 117
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 303 VSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFF 362
+S L + +KRI +E L D P M +A I+G +PY G+FF
Sbjct: 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF 69
Query: 363 FDVFFPSDYPNVPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTML 421
+ FP+DYP PP V + + R+ +PN+ + G +CL +L + +W P++ T+
Sbjct: 70 LTIHFPTDYPFKPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TIS 118
Query: 422 QVLVSIQALILNERP 436
+VL+SI +L+ + P
Sbjct: 119 KVLLSICSLLCDPNP 133
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
L KRI +E + L +D I ++ + + I G E +PY DG+F +++ P DYP
Sbjct: 4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 63
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
P V + + +PN+ G++CL +L T W P++ + VL+SIQAL+
Sbjct: 64 MEAPKVRFLTKI--YHPNIDRLGRICLDVLKT-------NWSPALQ-IRTVLLSIQALLA 113
Query: 433 NERP 436
+ P
Sbjct: 114 SPNP 117
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 5 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 2 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 62 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 110
Query: 433 NERP 436
+ P
Sbjct: 111 DPNP 114
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
+R+ ++K L+ D P + E + A+I G + TP+ DG F + F +YPN
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
PP V + S +PN+Y G +CL +L +W P+ + +L SIQ+L+
Sbjct: 67 PPTVKFISK--MFHPNVYADGSICLDILQN-------RWSPTYD-VAAILTSIQSLL 113
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 63 KPPKVAFTTR--IYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 112
Query: 434 ERP 436
P
Sbjct: 113 PNP 115
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 13 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 73 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 121
Query: 433 NERP 436
+ P
Sbjct: 122 DPNP 125
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWGPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
+R+ ++K L+ D P + E + A+I G + TP+ DG F + F +YPN
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
PP V + S +PN+Y G +CL +L +W P+ + +L SIQ+L+
Sbjct: 70 PPTVKFISK--MFHPNVYADGSICLDILQN-------RWSPTYD-VAAILTSIQSLL 116
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 13 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 73 KPPKVAFTTR--IYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 122
Query: 434 ERP 436
P
Sbjct: 123 PNP 125
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
+RI +E + L N+ P I +I G +GTPY G + ++F P YP
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNE 434
PP V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+ +
Sbjct: 64 PPKVRFLTK--IYHPNIDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSSP 113
Query: 435 RP 436
P
Sbjct: 114 EP 115
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDALRS-------QWSPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
+RI +E + L N+ P I +I G +GTPY G + ++F P YP
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNE 434
PP V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+ +
Sbjct: 64 PPKVRFLTK--IYHPNIDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSSP 113
Query: 435 RP 436
P
Sbjct: 114 EP 115
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 303 VSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFF 362
+S L + +KRIQ+E L+ D P + +A I+G + Y G+FF
Sbjct: 10 MSGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFF 69
Query: 363 FDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQ 422
V FP+DYP PP + + + +PN+ + G +CL +L + +W P++ T+ +
Sbjct: 70 LTVHFPTDYPFKPPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSK 119
Query: 423 VLVSIQALILNERP 436
VL+SI +L+ + P
Sbjct: 120 VLLSICSLLCDPNP 133
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRIQ+E L+ D P + +A I+G + Y G+FF V FP+DYP
Sbjct: 5 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP + + + +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 65 KPPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCD 114
Query: 434 ERP 436
P
Sbjct: 115 PNP 117
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRIQ+E L+ D P + +A I+G + Y G+FF V FP+DYP
Sbjct: 9 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP + + + +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 69 KPPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCD 118
Query: 434 ERP 436
P
Sbjct: 119 PNP 121
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A +G +PY G+FF + FP+DYP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G +CL +L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 308 QPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFF 367
Q S +L+ R+Q+E K +EN+ I + +S I G EGTPY G F +
Sbjct: 20 QGSKELL-RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITI 78
Query: 368 PSDYPNVPPNVHYHSGGLRLNPNLYN-CGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVS 426
P+DYP PP + + + +PN+ + G +CL +L KNE W P++ T+ L+S
Sbjct: 79 PNDYPYNPPKIKFVTK--IWHPNISSQTGAICLDVL------KNE-WSPAL-TIRTALLS 128
Query: 427 IQALILNERP 436
IQAL+ + +P
Sbjct: 129 IQALLSDPQP 138
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 316 RIQEEWKILENDLPDTIFVRVYESR---MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSD 370
R+QEE K D P + + +S +DL+ + I G T + GL+ + FP +
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 371 YPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQAL 430
YP PP + +PN+Y G VCLS+LN + E W P++ T+ Q+L+ IQ L
Sbjct: 74 YPTRPPKCRFTPP--LFHPNVYPSGTVCLSILN-----EEEGWKPAI-TIKQILLGIQDL 125
Query: 431 I 431
+
Sbjct: 126 L 126
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 69 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 120
Query: 429 ALILNE 434
L LNE
Sbjct: 121 EL-LNE 125
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 11 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 70
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 71 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 122
Query: 429 ALILNE 434
L LNE
Sbjct: 123 EL-LNE 127
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 69 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 120
Query: 429 ALILNE 434
L LNE
Sbjct: 121 EL-LNE 125
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 69 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 120
Query: 429 ALILNE 434
L LNE
Sbjct: 121 EL-LNE 125
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 8 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 67
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 68 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 119
Query: 429 ALILNE 434
L LNE
Sbjct: 120 EL-LNE 124
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 7 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 66
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 67 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 118
Query: 429 ALILNE 434
L LNE
Sbjct: 119 EL-LNE 123
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 66 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 117
Query: 429 ALILNE 434
L LNE
Sbjct: 118 EL-LNE 122
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 8 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 67
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 68 DDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 119
Query: 429 ALILNE 434
L LNE
Sbjct: 120 EL-LNE 124
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
L KRI +E + L +D I ++ + + I G E +PY DG+F +++ P DYP
Sbjct: 4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 63
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
P V + + +PN+ G++ L +L T W P++ + VL+SIQAL+
Sbjct: 64 MEAPKVRFLTKI--YHPNIDRLGRISLDVLKT-------NWSPALQ-IRTVLLSIQALLA 113
Query: 433 NERP 436
+ P
Sbjct: 114 SPNP 117
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 6 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G + L +L + +W P++ T+ +VL+SI +L+
Sbjct: 66 KPPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLC 114
Query: 433 NERP 436
+ P
Sbjct: 115 DPNP 118
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G + L +L + +W P++ T+ +VL+SI +L+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLC 113
Query: 433 NERP 436
+ P
Sbjct: 114 DPNP 117
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 374 VPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP V + + R+ +PN+ + G + L +L + +W P++ T+ +VL+SI +L+
Sbjct: 63 KPPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLC 111
Query: 433 NERP 436
+ P
Sbjct: 112 DPNP 115
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 303 VSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFF 362
+S L + +KRI +E L D P M +A I+G +PY G+FF
Sbjct: 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF 69
Query: 363 FDVFFPSDYPNVPPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTML 421
+ FP+DYP PP V + + R+ +PN+ + G + L +L + +W P++ T+
Sbjct: 70 LTIHFPTDYPFKPPKVAFTT---RIYHPNINSNGSIXLDILRS-------QWSPAL-TIS 118
Query: 422 QVLVSIQALILNERP 436
+VL+SI +L+ + P
Sbjct: 119 KVLLSICSLLCDPNP 133
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 315 KRIQEEWKILENDLPDTIFV-RVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
KR+ +E + L D P I E+ + + +I G TPY DG+F + FP DYP
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKN------EKWIPSMSTMLQVLVSI 427
PP + + L+PN+Y G+VC+S+L++ D N E+W P S ++L+S+
Sbjct: 67 SPPKLTFTPS--ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVE-KILLSV 123
Query: 428 QALI 431
+++
Sbjct: 124 MSML 127
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +P +Y G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 69 DDYPSSPPKCKFEPP--LFHPQVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 120
Query: 429 ALILNE 434
L LNE
Sbjct: 121 EL-LNE 125
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRIQ+E L+ D P + +A I+G + Y G+FF V FP+DYP
Sbjct: 9 LKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP + + + +PN+ + G + L +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 69 KPPKIAFTTK--IYHPNINSNGSIKLDILRS-------QWSPAL-TVSKVLLSICSLLCD 118
Query: 434 ERP 436
P
Sbjct: 119 PNP 121
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+ G VCLS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 69 DDYPSSPPKCKFEPP--LFHPNVAPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQ 120
Query: 429 ALILNERPYFNEPG 442
L LNE P +P
Sbjct: 121 EL-LNE-PNIQDPA 132
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 315 KRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
KRI +E + +++D I + V ES + L+ +G GTPY G F D+ P +YP
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 374 VPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP + + + +PN+ + G +CL +L W P + T+ L+S+QAL+
Sbjct: 65 KPPKMQFDTK--VYHPNISSVTGAICLDILRN-------AWSPVI-TLKSALISLQALLQ 114
Query: 433 NERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQ 492
+ P N+P + + + R +N+ A +L T LY + Y
Sbjct: 115 SPEP--NDP--QDAEVAQHYLRDRESFNKTA---ALWTRLYASETSNGQKGNVEESDLYG 167
Query: 493 RAHDIL 498
HD++
Sbjct: 168 IDHDLI 173
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
L KRI +E + L +D I ++ + + I G E +PY DG+F +++ P DYP
Sbjct: 4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 63
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
P V + + +P + G++ L +L T W P++ + VL+SIQAL+
Sbjct: 64 MEAPKVRFLTKI--YHPAIDRLGRISLDVLKT-------NWSPALQ-IRTVLLSIQALLA 113
Query: 433 NERP 436
+ P
Sbjct: 114 SPNP 117
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 375 PPNVHYHSGGLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + R+ +PN+ + G + L +L + +W P++ + +VL+SI +L+ +
Sbjct: 63 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPALK-ISKVLLSICSLLCD 111
Query: 434 ERP 436
P
Sbjct: 112 PNP 114
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 317 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPP 376
I+E ++L +P I ES VI G + +P+ G F ++F P +YP P
Sbjct: 11 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 69
Query: 377 NVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+
Sbjct: 70 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALL 114
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 315 KRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
KRI +E + +++D I + V ES + L+ +G GTPY G F D+ P +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 374 VPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432
PP + + + +PN+ + G +CL +L W P + T+ L+S+QAL+
Sbjct: 64 KPPKMQFDTK--VYHPNISSVTGAICLDILKN-------AWSPVI-TLKSALISLQALLQ 113
Query: 433 NERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLY 473
+ P N+P + + + R +N+ A +L T LY
Sbjct: 114 SPEP--NDP--QDAEVAQHYLRDRESFNKTA---ALWTRLY 147
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 317 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPP 376
I+E ++L +P I ES VI G + +P+ G F ++F P +YP P
Sbjct: 14 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 72
Query: 377 NVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+
Sbjct: 73 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALL 117
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 317 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPP 376
I+E ++L +P I ES VI G + +P+ G F ++F P +YP P
Sbjct: 12 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 70
Query: 377 NVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+
Sbjct: 71 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALL 115
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G V LS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 66 DDYPSSPPKCKFEPP--LFHPNVYPSGTVSLSIL-----EEDKDWRPAI-TIKQILLGIQ 117
Query: 429 ALILNE 434
L LNE
Sbjct: 118 EL-LNE 122
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
KRIQ+E + D P + R+ I+G G+ Y G+FF D+ F +YP
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + N N + G +CL +L + W P++ T+ +VL+SI +L+ +
Sbjct: 110 KPPKVTFRTRIYHCNIN--SQGVICLDIL-------KDNWSPAL-TISKVLLSICSLLTD 159
Query: 434 ---ERPYFNEPGWESMDSMEEGERQSNMYNER 462
P + M + E +R + + +R
Sbjct: 160 CNPADPLVGSIATQYMTNRAEHDRMARQWTKR 191
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
+KRI +E L D P M +A I+G +PY G+FF + FP+DYP
Sbjct: 3 LKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + +P + + G + L +L + +W P++ T+ +VL+SI +L+ +
Sbjct: 63 KPPKVAFTTRI--YHPAINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLCD 112
Query: 434 ERP 436
P
Sbjct: 113 PNP 115
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 314 VKRIQEEWKILENDLP---DTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFP 368
+ R+ +E K D P + + + M+L+ I G +GTP+ GLF + F
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 369 SDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428
DYP+ PP + +PN+Y G V LS+L ++++ W P++ T+ Q+L+ IQ
Sbjct: 66 DDYPSSPPKCKFEPP--LFHPNVYPSGTVXLSIL-----EEDKDWRPAI-TIKQILLGIQ 117
Query: 429 ALILNE 434
L LNE
Sbjct: 118 EL-LNE 122
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 317 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPP 376
I+E ++L +P I ES VI G + +P+ G F ++F P +YP P
Sbjct: 9 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
Query: 377 NVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 436
V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+ P
Sbjct: 68 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 117
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNV 374
KRIQ+E + D P + R+ I+G G+ Y G+FF D+ F DYP
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 375 PPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN- 433
PP V + + N N + G +CL +L + W P++ T+ +VL+SI +L+ +
Sbjct: 66 PPKVTFRTRIYHCNIN--SQGVICLDIL-------KDNWSPAL-TISKVLLSICSLLTDC 115
Query: 434 --ERPYFNEPGWESMDSMEEGERQSNMYNER 462
P + M + E +R + + +R
Sbjct: 116 NPADPLVGSIATQYMTNRAEHDRMARQWTKR 146
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 317 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPP 376
I+E ++L +P I ES VI G + +P+ G F ++F P +YP P
Sbjct: 7 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 65
Query: 377 NVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 436
V + + +PN+ G++CL +L +KW P++ + VL+SIQAL+ P
Sbjct: 66 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 115
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 304 SSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFF 363
S++E +++ + +E L D PD I V E + L+ I G EGTPY GLF
Sbjct: 5 SNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRM 64
Query: 364 DVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQV 423
+ D+P PP ++ + +PN+ G++C+++L W + + V
Sbjct: 65 KLLLGKDFPASPPKGYFLTK--IFHPNVGANGEICVNVL-------KRDWTAELG-IRHV 114
Query: 424 LVSIQALILNERP 436
L++I+ L+++ P
Sbjct: 115 LLTIKCLLIHPNP 127
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
+KR+ E+K L + P+ I + E A+I+G E T + G+F + FP DYP
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVS 426
PP + + +PN+Y G+VC+S+L+ D E+W P S ++L+S
Sbjct: 69 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLS 125
Query: 427 IQALI 431
+ +++
Sbjct: 126 VVSML 130
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
+KR+ E+K L + P+ I + E A+I+G E T + G+F + FP DYP
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVS 426
PP + + +PN+Y G+VC+S+L+ D E+W P S ++L+S
Sbjct: 68 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLS 124
Query: 427 IQALI 431
+ +++
Sbjct: 125 VVSML 129
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
+KR+ E+K L + P+ I + E A+I+G E T + G+F + FP DYP
Sbjct: 11 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVS 426
PP + + +PN+Y G+VC+S+L+ D E+W P + ++ ++L+S
Sbjct: 71 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLS 127
Query: 427 IQALI 431
+ +++
Sbjct: 128 VVSML 132
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 314 VKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYP 372
+KR+ E+K L + P+ I + E A+I+G E T + G+F + FP DYP
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVS 426
PP + + +PN+Y G+VC+S+L+ D E+W P S ++L+S
Sbjct: 65 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLS 121
Query: 427 IQALI 431
+ +++
Sbjct: 122 VVSML 126
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 345 RAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYN-CGKVCLSLLN 403
R I G GTPY G F D+ P DYP PP + + + +PN+ + G +CL +L
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTK--IWHPNISSQTGAICLDIL- 134
Query: 404 TWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 436
+W P++ T+ L+SIQA++ + P
Sbjct: 135 ------KHEWSPAL-TIRTALLSIQAMLADPVP 160
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 346 AVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTW 405
+++G T Y G F + FP DYP PP + + S +PN+ G VC+S+L+
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISE--IWHPNIDKEGNVCISILHDP 95
Query: 406 DGDK------NEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMY 459
DK E+W+P + T+ +L+S+ +++ +P +ES +++ + Q Y
Sbjct: 96 GDDKWGYERPEERWLP-VHTVETILLSVISML-------TDPNFESPANVDAAKMQRENY 147
Query: 460 NE 461
E
Sbjct: 148 AE 149
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPS 369
S +L+K ++E I + + + ++V E+ + + +IV + PY G F ++ FP+
Sbjct: 6 SRRLMKELEE---IRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA 61
Query: 370 DYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQA 429
+YP PP + + + +PN+ G+VCL +++ E W P+ T QV+ S+ A
Sbjct: 62 EYPFKPPKITFKTKI--YHPNIDEKGQVCLPVISA------ENWKPATKTD-QVIQSLIA 112
Query: 430 LILNERP 436
L+ + +P
Sbjct: 113 LVNDPQP 119
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPS 369
S +L+K ++E I + + + ++V E+ + + +IV + PY G F ++ FP+
Sbjct: 4 SRRLMKELEE---IRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA 59
Query: 370 DYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQA 429
+YP PP + + + +PN+ G+VCL +++ E W P+ T QV+ S+ A
Sbjct: 60 EYPFKPPKITFKTKI--YHPNIDEKGQVCLPVISA------ENWKPATKTD-QVIQSLIA 110
Query: 430 LILNERP 436
L+ + +P
Sbjct: 111 LVNDPQP 117
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVI--VGAEGTPYHDGLFFFDVFFPSDYP 372
KR+Q+E L+ND P + + + + + ++ GA GT Y F F S YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
P V + + ++P++Y+ G +CLS+L E W P++S V +SI +++
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSIL-------TEDWSPALSVQ-SVCLSIISML 135
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 342 DLLR--AVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCL 399
DL R +I+G T Y G+F + FP DYP PP + + + +PN+ G VC+
Sbjct: 46 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--IWHPNVDKNGDVCI 103
Query: 400 SLLNTWDGDK------NEKWIPSMSTMLQVLVSIQALI 431
S+L+ DK E+W+P + T+ +++S+ +++
Sbjct: 104 SILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISML 140
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 316 RIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVP 375
RIQ+E N+ P + V+ + + + VG E T Y + ++ + FP DYP P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 376 PNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQAL 430
P V++ + + ++Y+ G +CLSLL GD + PS+S VL I L
Sbjct: 70 PIVYFLQKPPK-HTHVYSNGDICLSLL----GD---DYNPSLSISGLVLSIISML 116
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 310 SNKLVKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVF 366
+N V+RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 114
Query: 367 FPSDYPNVPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMS 418
P YP PP V + + +PN+ + G +CL +L ++W +M+
Sbjct: 115 IPETYPFNPPKVRFITK--IWHPNISSVTGAICLDIL-------KDQWAAAMT 158
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 301 SNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGL 360
S+ SS P+ +R+++++ ++ D I S + V+ G E TPY G
Sbjct: 4 SSTSSKRAPTTA-TQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY 62
Query: 361 FFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTM 420
+ + FP ++P PP+++ + R N ++CLS+ + N W S+ST+
Sbjct: 63 YHGKLIFPREFPFKPPSIYMITPNGRFKCN----TRLCLSITDFHPDTWNPAW--SVSTI 116
Query: 421 LQVLVSIQA 429
L L+S
Sbjct: 117 LTGLLSFMV 125
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 310 SNKLVKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVF 366
+N V+RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 19 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 78
Query: 367 FPSDYPNVPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMS 418
P YP PP V + + +PN+ + G +CL +L ++W +M+
Sbjct: 79 IPETYPFNPPKVRFITK--IWHPNISSVTGAICLDIL-------KDQWAAAMT 122
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 346 AVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTW 405
I G T Y G F + FP DYP PP + + +PN+Y G VC+S+L+
Sbjct: 39 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MWHPNIYETGDVCISILHPP 96
Query: 406 DGD------KNEKWIPSMSTMLQVLVSIQALILNE 434
D +E+W P+ + + +L+S+ +L LNE
Sbjct: 97 VDDPQSGELPSERWNPTQN-VRTILLSVISL-LNE 129
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 346 AVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTW 405
I G T Y G F + FP DYP PP + + +PN+Y G VC+S+L+
Sbjct: 42 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MWHPNIYETGDVCISILHPP 99
Query: 406 DGD------KNEKWIPSMSTMLQVLVSIQALILNE 434
D +E+W P+ + + +L+S+ +L LNE
Sbjct: 100 VDDPQSGELPSERWNPTQN-VRTILLSVISL-LNE 132
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 310 SNKLVKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVF 366
+N V+RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 4 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 63
Query: 367 FPSDYPNVPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMS 418
P YP PP V + + +PN+ + G +CL +L ++W +M+
Sbjct: 64 IPETYPFNPPKVRFITK--IWHPNISSVTGAICLDIL-------KDQWAAAMT 107
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 310 SNKLVKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVF 366
+N V+RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 62
Query: 367 FPSDYPNVPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMS 418
P YP PP V + + +PN+ + G +CL +L ++W +M+
Sbjct: 63 IPETYPFNPPKVRFITK--IWHPNISSVTGAICLDIL-------KDQWAAAMT 106
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 350 GAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL-YNCGKVCLSLLN-TW 405
G EGTPY DG + V PSDYP P++ + L+PN+ G VCL ++N TW
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGF--CNRILHPNVDERSGSVCLDVINQTW 101
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 316 RIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVP 375
RIQ+E + P + V+ S + + VG E T Y + ++ + FP +YP P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 376 PNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQAL 430
P V++ + + ++Y+ G +CLS+L GD + PS+S +L I L
Sbjct: 84 PIVYFLQKPPK-HTHVYSNGDICLSVL----GD---DYNPSLSISGLILSIISML 130
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 348 IVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDG 407
++ + PYH F + FP +YP PP + + + +PN+ G++CL ++++
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI--YHPNVDENGQICLPIISS--- 91
Query: 408 DKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILS 467
E W P T QVL ++ L+ RP EP MD + + ++ + A +
Sbjct: 92 ---ENWKPCTKTC-QVLEALNVLV--NRPNIREPL--RMDLADLLTQNPELFRKNAEEFT 143
Query: 468 LKTMLYTVRRP 478
L+ + V RP
Sbjct: 144 LR---FGVDRP 151
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 348 IVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDG 407
++ + PYH F + FP +YP PP + + + +PN+ G++CL ++++
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI--YHPNVDENGQICLPIISS--- 94
Query: 408 DKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILS 467
E W P T QVL ++ L+ RP EP MD + + ++ + A +
Sbjct: 95 ---ENWKPCTKTC-QVLEALNVLV--NRPNIREPL--RMDLADLLTQNPELFRKNAEEFT 146
Query: 468 LKTMLYTVRRP 478
L+ + V RP
Sbjct: 147 LR---FGVDRP 154
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 310 SNKLVKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVF 366
+N V+RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 6 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 65
Query: 367 FPSDYPNVPPNVHYHSGGLRLNPNLYNC-GKVCLSLLNTWDGDKNEKWIPSMS 418
P YP PP V + + +PN+ + G +CL +L ++W +M+
Sbjct: 66 IPETYPFNPPKVRFITK--IWHPNISSVTGAICLDIL-------KDQWAAAMT 109
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 346 AVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTW 405
A + G + T Y + + FPSDYP PP V + + +PN+ G +CL +L
Sbjct: 43 ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC--WHPNVDQSGNICLDIL--- 97
Query: 406 DGDKNEKWIPSMSTMLQVLVSIQALI 431
E W S + +L+S+Q+L+
Sbjct: 98 ----KENWTASYD-VRTILLSLQSLL 118
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 338 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC-GK 396
E+ + A+I G TPY + F + PS YP PP + + + L+ N+ + G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHSNVKSATGE 102
Query: 397 VCLSLLNTWDGDKNEKWIP 415
+CL++L K E+W P
Sbjct: 103 ICLNIL------KPEEWTP 115
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAV--IVGAEGTPYHDGLFFFDVFFPSDYP 372
KR+Q+E L + + + +L + V I GA GT Y D + + FPS YP
Sbjct: 33 KRLQQELMTLM--MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 90
Query: 373 NVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
P V + + +PN+ G + L +L EKW ++ + +L+SIQ+L+
Sbjct: 91 YNAPTVKFLTPC--YHPNVDTQGNISLDIL-------KEKW-SALYDVRTILLSIQSLL 139
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 338 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC-GK 396
E+ + A+I G TPY + F + PS YP PP + + + L+ N+ + G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSATGE 102
Query: 397 VCLSLLNTWDGDKNEKWIP 415
+CL++L K E+W P
Sbjct: 103 ICLNIL------KPEEWTP 115
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 338 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC-GK 396
E+ + A+I G TPY + F + PS YP PP + + + L+ N+ + G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSATGE 102
Query: 397 VCLSLLNTWDGDKNEKWIP 415
+CL++L K E+W P
Sbjct: 103 ICLNIL------KPEEWTP 115
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 313 LVKRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDY 371
LVK + E LE +LP T V + +++ + + EG Y G F F+ P Y
Sbjct: 19 LVKEVAE----LEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAY 73
Query: 372 PNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
VPP V + +PN+ G++CLSLL D W P+ T+ V+ + +L
Sbjct: 74 NMVPPKVKCLTK--IWHPNITETGEICLSLLREHSID-GTGWAPT-RTLKDVVWGLNSLF 129
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 313 LVKRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDY 371
LVK + E LE +LP T V + +++ + + EG Y G F F+ P Y
Sbjct: 19 LVKEVAE----LEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAY 73
Query: 372 PNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431
VPP V + +PN+ G++CLSLL D W P+ T+ V+ + +L
Sbjct: 74 NMVPPKVKCLTK--IWHPNITETGEICLSLLREHSID-GTGWAPT-RTLKDVVWGLNSLF 129
Query: 432 LN 433
+
Sbjct: 130 TD 131
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 330 DTIFVRVYESRMDL-----LRAVIV---GAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYH 381
DT +++ ES+ ++ L +V G +GTPY G++ V P YP P++ +
Sbjct: 31 DTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM 90
Query: 382 SGGLRLNPNLYNC-GKVCLSLLN-TW 405
+ +PN+ G VCL ++N TW
Sbjct: 91 NK--IFHPNIDEASGTVCLDVINQTW 114
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 350 GAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC-GKVCLSLLN-TW 405
G GT Y G++ V P DYP P++ + + L+PN+ G VCL ++N TW
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--LLHPNVDEASGSVCLDVINQTW 92
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 316 RIQEEWKILENDLPDTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
RIQ++ I E +LP T + + DLL + VI EG Y G F F YP+
Sbjct: 10 RIQKD--INELNLPKTCDIS-FSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPH 65
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + +PN+ G VCL++L E W P + T+ ++ +Q L L
Sbjct: 66 DPPKVKCET--XVYHPNIDLEGNVCLNIL-------REDWKPVL-TINSIIYGLQYLFLE 115
Query: 434 ERP 436
P
Sbjct: 116 PNP 118
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 316 RIQEEWKILENDLPDTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPSDYPN 373
RIQ++ I E +LP T + + DLL + VI EG Y G F F YP+
Sbjct: 30 RIQKD--INELNLPKTCDIS-FSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPH 85
Query: 374 VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433
PP V + + +PN+ G V L++L E W P + T+ ++ +Q L L
Sbjct: 86 DPPKVKCET--MVYHPNIDLEGNVALNIL-------REDWKPVL-TINSIIYGLQYLFLE 135
Query: 434 ERP 436
P
Sbjct: 136 PNP 138
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
ML FDSV G + PV W+A SL+ +K SD
Sbjct: 184 MLDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 220
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 348 IVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVC---LSLLNT 404
I G GT + + ++ +F +YP+ PP V + + + ++ + NCG+V L +L
Sbjct: 65 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT-KIEMS-CVDNCGRVIKNNLHILKN 122
Query: 405 WD 406
W+
Sbjct: 123 WN 124
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 348 IVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVC---LSLLNT 404
I G GT + + ++ +F +YP+ PP V + + + ++ + NCG+V L +L
Sbjct: 61 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT-KIEMS-CVDNCGRVIKNNLHILKN 118
Query: 405 WD 406
W+
Sbjct: 119 WN 120
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 304 SSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRA------VIVGAEGTPYH 357
SS QP N RI+ + + DLP T+ + V S R+ VIV + Y+
Sbjct: 20 SSSIQP-NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYN 78
Query: 358 DGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSM 417
G F++ F YP PP V +PN+ G VCL++L E W P++
Sbjct: 79 YGSINFNLDFNEVYPIEPPKVVCLKK--IFHPNIDLKGNVCLNIL-------REDWSPAL 129
Query: 418 STMLQVLVSIQALILNERPYFNEP-GWESMDSMEEGERQ 455
LQ +++ L L P N+P ++ + EGE++
Sbjct: 130 D--LQSIIT-GLLFLFLEPNPNDPLNKDAAKLLCEGEKE 165
>pdb|2X0O|A Chain A, Apo Structure Of The Alcaligin Biosynthesis Protein C
(Alcc) From Bordetella Bronchiseptica
pdb|2X0P|A Chain A, Co-Complex Structure Of Alcaligin Biosynthetase Protein C
(Alcc) With Adenosine From Bordetella Bronchiseptica
pdb|2X0Q|A Chain A, Co-Complex Structure Of Alcaligin Biosynthesis Protein C
(Alcc) With Atp From Bordetella Bronchiseptica
Length = 618
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 306 LEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHD 358
L Q + +L + E +K+L TIFV V+E L ++V E P HD
Sbjct: 483 LPQAAQRLAADVPEAYKLL------TIFVDVFEGYFRHLTQILVETELMPEHD 529
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
M FDSV G + PV W+A SL+ +K SD
Sbjct: 184 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 220
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
M FDSV G + PV W+A SL+ +K SD
Sbjct: 181 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 217
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
M FDSV G + PV W+A SL+ +K SD
Sbjct: 183 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 219
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
M FDSV G + PV W+A SL+ +K SD
Sbjct: 188 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 224
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
M FDSV G + PV W+A SL+ +K SD
Sbjct: 183 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 219
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 MLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTVIGSD 129
M FDSV G + PV W+A SL+ +K SD
Sbjct: 242 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,865,305
Number of Sequences: 62578
Number of extensions: 801588
Number of successful extensions: 1795
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 121
length of query: 588
length of database: 14,973,337
effective HSP length: 104
effective length of query: 484
effective length of database: 8,465,225
effective search space: 4097168900
effective search space used: 4097168900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)