Query 046867
Match_columns 588
No_of_seqs 343 out of 1702
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0895 Ubiquitin-conjugating 100.0 1.1E-55 2.4E-60 498.2 11.3 272 286-560 826-1097(1101)
2 KOG0895 Ubiquitin-conjugating 100.0 9.3E-49 2E-53 442.3 26.1 493 1-553 1-525 (1101)
3 COG5078 Ubiquitin-protein liga 100.0 9.2E-38 2E-42 294.0 15.3 122 311-444 4-126 (153)
4 KOG0417 Ubiquitin-protein liga 100.0 7.1E-38 1.5E-42 291.1 13.6 143 313-469 2-144 (148)
5 PTZ00390 ubiquitin-conjugating 100.0 2E-35 4.4E-40 277.6 14.9 142 313-491 3-144 (152)
6 KOG0419 Ubiquitin-protein liga 100.0 3.9E-35 8.4E-40 267.5 12.5 139 311-463 3-141 (152)
7 PLN00172 ubiquitin conjugating 100.0 1.3E-34 2.8E-39 270.5 14.8 143 313-492 2-144 (147)
8 KOG0418 Ubiquitin-protein liga 100.0 1.8E-32 3.8E-37 262.7 12.5 121 313-445 4-128 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-31 2.5E-36 245.8 12.3 117 316-443 1-118 (140)
10 KOG0425 Ubiquitin-protein liga 100.0 1.1E-30 2.3E-35 244.4 15.9 154 313-496 6-166 (171)
11 KOG0424 Ubiquitin-protein liga 100.0 1.5E-30 3.2E-35 240.6 14.3 143 310-464 2-149 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 2.8E-30 6.1E-35 235.9 14.6 123 311-436 3-132 (165)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 1.8E-30 4E-35 238.4 13.4 139 315-489 2-140 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 1.3E-29 2.9E-34 233.7 13.6 117 315-442 1-118 (145)
15 KOG0421 Ubiquitin-protein liga 100.0 1.1E-28 2.3E-33 228.3 10.6 122 310-443 27-148 (175)
16 KOG0894 Ubiquitin-protein liga 99.9 3.6E-27 7.8E-32 230.2 16.8 166 309-500 2-167 (244)
17 KOG0422 Ubiquitin-protein liga 99.9 2.1E-26 4.7E-31 212.1 10.6 143 312-491 2-145 (153)
18 KOG0423 Ubiquitin-protein liga 99.9 1.6E-25 3.4E-30 212.6 8.2 154 306-476 4-157 (223)
19 KOG0420 Ubiquitin-protein liga 99.9 4.5E-25 9.8E-30 209.4 11.2 151 309-514 25-179 (184)
20 KOG0416 Ubiquitin-protein liga 99.9 3.9E-24 8.4E-29 202.8 11.0 143 314-496 5-149 (189)
21 KOG0427 Ubiquitin conjugating 99.9 1.7E-23 3.6E-28 191.5 10.7 118 307-434 10-127 (161)
22 KOG0428 Non-canonical ubiquiti 99.8 1.8E-19 4E-24 179.2 10.2 113 309-431 8-120 (314)
23 KOG0429 Ubiquitin-conjugating 99.6 8.3E-15 1.8E-19 144.5 14.7 169 315-495 22-202 (258)
24 KOG0896 Ubiquitin-conjugating 98.7 2.6E-08 5.7E-13 92.5 6.6 109 314-433 7-123 (138)
25 PF14461 Prok-E2_B: Prokaryoti 97.7 5.5E-05 1.2E-09 70.0 5.9 68 357-432 34-105 (133)
26 KOG0897 Predicted ubiquitin-co 97.5 0.00017 3.7E-09 66.0 5.6 59 362-433 14-77 (122)
27 PF05743 UEV: UEV domain; Int 97.4 0.00041 8.9E-09 63.8 7.1 80 342-433 33-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.1 0.00041 8.9E-09 65.8 3.8 87 310-403 22-118 (161)
29 KOG2391 Vacuolar sorting prote 96.0 0.016 3.5E-07 61.8 7.3 78 354-439 61-143 (365)
30 KOG3357 Uncharacterized conser 95.2 0.024 5.2E-07 53.4 4.2 86 310-402 25-120 (167)
31 PF14462 Prok-E2_E: Prokaryoti 94.4 0.28 6.1E-06 45.8 9.1 94 331-432 13-120 (122)
32 PF05773 RWD: RWD domain; Int 91.2 0.32 6.9E-06 42.2 4.4 68 315-383 4-73 (113)
33 smart00591 RWD domain in RING 88.8 1.6 3.5E-05 37.5 6.9 27 357-383 39-65 (107)
34 PF09288 UBA_3: Fungal ubiquit 81.8 0.48 1E-05 38.7 0.2 28 535-563 4-31 (55)
35 PF14457 Prok-E2_A: Prokaryoti 65.1 10 0.00022 37.0 4.7 64 363-433 57-126 (162)
36 PF09765 WD-3: WD-repeat regio 46.7 34 0.00074 36.4 5.3 91 311-433 98-188 (291)
37 PF07267 Nucleo_P87: Nucleopol 34.5 3.6E+02 0.0077 32.0 11.1 87 414-507 30-118 (654)
38 KOG0309 Conserved WD40 repeat- 26.5 1.5E+02 0.0033 35.8 6.7 67 315-383 423-491 (1081)
39 PF06113 BRE: Brain and reprod 26.4 1.1E+02 0.0025 33.3 5.3 44 341-391 53-96 (333)
40 COG4468 GalT Galactose-1-phosp 22.9 1.9E+02 0.0042 32.6 6.3 131 239-391 242-390 (503)
41 KOG3285 Spindle assembly check 22.2 1.4E+02 0.003 30.3 4.6 76 268-353 85-160 (203)
42 KOG1047 Bifunctional leukotrie 20.5 60 0.0013 37.7 2.0 52 355-408 249-303 (613)
No 1
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-55 Score=498.21 Aligned_cols=272 Identities=52% Similarity=0.833 Sum_probs=255.6
Q ss_pred cccccccCCCccchhccccCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEE
Q 046867 286 KQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDV 365 (588)
Q Consensus 286 k~fd~v~~~sdH~f~~~~ss~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI 365 (588)
+.||++++..+|||....... .+.+.+++..+.||+.|..++|.||+||.+|+||++++++|+||.||||++|+|+|+|
T Consensus 826 ~~F~v~~~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~ 904 (1101)
T KOG0895|consen 826 LRFDVNYDYMDHHKNANDGNK-AAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDF 904 (1101)
T ss_pred ccccccCchHHHhhhhccccc-HHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEe
Confidence 789999999999998764322 2233889999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCCCCCcccccCCCcccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 366 FFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 366 ~FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
+||++||..||.|+|++++.|+|||+|.+|+||||||+||+|.+.|.|+|+ ++|+|||+|||+|+++.+||||||||+.
T Consensus 905 ~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~gy~~ 983 (1101)
T KOG0895|consen 905 QFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEAGYEK 983 (1101)
T ss_pred ecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcc-hhHHHHHHHhhhhhcccccccCcccccc
Confidence 999999999999999999999999999999999999999999999999996 7999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHhcHHHHHHHHHHHhccCcccccccCCcccccCCC
Q 046867 446 MDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGGVQKIHKGK 525 (588)
Q Consensus 446 ~~~t~~~e~~s~~YNe~v~~~s~ktm~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~~k~~~~ga~vg~~~~~~~~~~~~~~ 525 (588)
+.||++|+++++.||+++|+++|++|+++||+||+.|+++|++||++++.+|+++|++||+|.+.|+.+++.+.+.....
T Consensus 984 ~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i~~Hf~~~~~ei~~~c~a~~~~~~~~s~~k~~v~d~~~a~ 1063 (1101)
T KOG0895|consen 984 QRGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVIHKHFYLRGVEIMAACEAWIAGILQGSSDKRVVSDHAAAL 1063 (1101)
T ss_pred cccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877666
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHhcCchhhhhhhc
Q 046867 526 KSCSPDFKASIAGHCDLLIKEFTYIGVKDCENFLT 560 (588)
Q Consensus 526 ~~~s~~Fk~~l~~~~~~Lv~~F~~~G~~d~~~~~~ 560 (588)
.+.+++|+..|..+...+..+|...|+ +|-.+.+
T Consensus 1064 ks~s~~~k~~l~~~~~~~~~~~~~~~a-~~~~~~~ 1097 (1101)
T KOG0895|consen 1064 KSHSAQFKEELLKLPCPEGLAPDTVGA-PEVCEAT 1097 (1101)
T ss_pred hccchhhhhhhhhCCcccccchhhcCc-hhhhhcc
Confidence 778899999999999999999999999 4554443
No 2
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-49 Score=442.31 Aligned_cols=493 Identities=34% Similarity=0.525 Sum_probs=377.3
Q ss_pred CCCCceecCCCC--CCCCcccccccccceeeecCCCCcccceeeechhhcccCCCcccccCCCCCCCcccccc---cc-c
Q 046867 1 MDPDIIEIPPPV--FQAPTRHKQKQVFHEVIDLDEGEVSADVIAVDEIAKTGNKGKAIKNDSDGSGSYQHKHF---NV-V 74 (588)
Q Consensus 1 m~p~v~ei~~p~--~~~~~~~k~k~~~~~vidid~~~~~~d~~~~~~~~~~~nkgk~i~~~~~~~~~~~~~~~---~~-~ 74 (588)
|++++++|.+|. .+.++.++..+..++|||.+...-.+-+++.++.+++++||+.|+.++++++|- .-+. .+ +
T Consensus 1 mE~~~~~~~~~~~~~~~srv~s~~~~s~~vvd~e~~~i~~~giv~~n~~Dtks~g~~~dVds~S~~dq-ss~~~~e~l~~ 79 (1101)
T KOG0895|consen 1 MEHFVVNINTSPSLAVDSRVRSPVDESPEVVDSEYFLIRRMGIVFKNVDDTKSKGEESDVDSDSKNDQ-SSEPHDESLDP 79 (1101)
T ss_pred CCcccccCCCCCccccCCccCChhhcCceeeccCcceeeecccccccccccccccceeeccccccccc-CcccchhhccC
Confidence 899999999993 455555555557999999999866665555567689999999999999999992 2111 01 1
Q ss_pred ------Ccccccc--cccc---cCcc-hhHHHhhhcCCCCCCCCcccccccccCCCccccccc---cCC-----CCCccc
Q 046867 75 ------DDVMDNV--VDDV---MGVQ-DHAMLQAYFDSVDIPAGVEAPVPWLADPSLRKEKTV---IGS-----DPIYVE 134 (588)
Q Consensus 75 ------~~~~~~~--~~~~---~d~d-~y~~~q~~fd~~dip~gve~p~~w~~~~~~~~~~~~---~~s-----~~~~~~ 134 (588)
....+++ ++|+ .|++ +|.|.|+.+|.+++|+||+.-|.|..++.. +.+. .+| ..-++.
T Consensus 80 ~d~~~~~~d~env~e~~~a~~~~dV~~~~~~~qd~~d~~~~~~~v~~~v~W~~ns~s--i~~~~~l~sser~~i~~~~~~ 157 (1101)
T KOG0895|consen 80 GDPSLLRRDDENVCEVEDANQSIDVDQDYEMYQDLNDMKETPTGVPVSVRWTDNSNS--IETANSLKSSERLWIALLYLG 157 (1101)
T ss_pred CcchhcccCcccchhhhccccccccccccchhhhhcccccccccCceeeeccccccc--hhhhccccccccccccccccc
Confidence 1112222 3333 7888 999999999999999999999999998865 3333 222 112222
Q ss_pred cC--CccCCCcccccccccCCCCCCCCCCCCCCcccccccccchhccccccccccCCCCCCCCC--ccCCCCCCcccccc
Q 046867 135 PA--SEISSSLPRTVDVLGHSAKKDFSSSLAHPQSAHSKNVAHFHKVQKNTAASQSAGSTAALP--FYGTLPIPQWVGEK 210 (588)
Q Consensus 135 ~~--s~~~~~~~~~~~~~~h~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 210 (588)
+. +.+++++.+.|+++. ..+.||| ++...+. +.++| ...++.+| .+|+.+.|.
T Consensus 158 ~~seats~t~vvq~~~~~~--------it~dl~~--k~~a~y~------~~~fs--t~~l~~t~d~~sg~~~~P~----- 214 (1101)
T KOG0895|consen 158 KASEATSSTNVVQGANAGP--------ITVDLPQ--KSIAIYK------KVLFS--TQNLPPTPDTVSGTIRRPF----- 214 (1101)
T ss_pred ccccccCccceeecccccc--------ccccccc--ccccccc------cchhh--cccCCCCCCccccccCCCC-----
Confidence 23 334699999999877 3466666 4432332 33333 24455555 667777662
Q ss_pred ccCCCCCCCcccccccccCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCccCCccccCchhHHHHhhcccccccc
Q 046867 211 SKSNVGPLMPWWHESLKAELNPTFANNTNHLSFYDPFDNEDMPPEEPIDTPSGEDCSRNKESLDGDDVLMRFKLFKQFDA 290 (588)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~fk~fd~ 290 (588)
-+.++....+ +|.+-++-. +.--..+|++ ...+ .-.+...|..|++
T Consensus 215 -----------------~~~~~~i~sr-----~~~v~e~~~---~lv~d~~~~k-~~~~--------~plrl~~i~kf~~ 260 (1101)
T KOG0895|consen 215 -----------------PPNYPGIHSR-----SHVVKDEPY---ELVPDFSMLK-VETE--------EPLRLDLIPKFKL 260 (1101)
T ss_pred -----------------CCcccchhcc-----ccccccccc---cccccccccc-cccc--------cCccccchhhhcc
Confidence 0001111111 121222211 1111222311 1111 0111117899999
Q ss_pred ccCCCccchhccccCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCC
Q 046867 291 VEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSD 370 (588)
Q Consensus 291 v~~~sdH~f~~~~ss~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~d 370 (588)
+++.+.|||+.+..+....+..+.+|+++|++.|.+++|+||++++++.||+.++++|.||.||||++|+|.|+|+||..
T Consensus 261 ~ed~~~~~~~~k~~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~ 340 (1101)
T KOG0895|consen 261 VEDKSFHHYAKKGKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDT 340 (1101)
T ss_pred ccccccccccccCCCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCC
Confidence 99999999998887778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCC-CcccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccccccc
Q 046867 371 YPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSM 449 (588)
Q Consensus 371 YP~~PPkV~F~T~-~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t 449 (588)
||..||.|+|+|. ++|++||+|.+|+|||++|+||.|...+.|+|..++|.|+|++||.|+++..||+++|++....+.
T Consensus 341 yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~ga~~~~~~ 420 (1101)
T KOG0895|consen 341 YPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYFNEPGALQKRTS 420 (1101)
T ss_pred CCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCcccccccccccccC
Confidence 9999999999998 789999999999999999999999888999998779999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHhcHHHHHHHHHHHhccCcccccccCCcccccCCCCCCC
Q 046867 450 EEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGGVQKIHKGKKSCS 529 (588)
Q Consensus 450 ~~~e~~s~~YNe~v~~~s~ktm~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~~k~~~~ga~vg~~~~~~~~~~~~~~~~~s 529 (588)
+.+...+..|++.+++..+..|.+.+++||+.|+..+++||..+.+.++.+|.+|-.++..|....+......+....-.
T Consensus 421 a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~~~~~p~~r~ea~gs~~ 500 (1101)
T KOG0895|consen 421 ADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGATLGAKVDGIPSGREEAAGSIE 500 (1101)
T ss_pred CCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCcChhhcCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998887666655444444445556
Q ss_pred HHHHHHHHHhHHHHHH-HHHhcCch
Q 046867 530 PDFKASIAGHCDLLIK-EFTYIGVK 553 (588)
Q Consensus 530 ~~Fk~~l~~~~~~Lv~-~F~~~G~~ 553 (588)
..|+..|..+.+.+++ +|...|..
T Consensus 501 ~~~~~dL~~~~Eq~leee~~~~gel 525 (1101)
T KOG0895|consen 501 LKFPTDLAGFAEQVLEEEFQCLGEL 525 (1101)
T ss_pred ccchhhhhhHHHHHHHhhccccccc
Confidence 7788999999997666 66666663
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-38 Score=294.02 Aligned_cols=122 Identities=34% Similarity=0.644 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCC-CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ed-nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
..+.+||++|++.|+++++.+|.+.+..+ |+..|.++|.||++||||||+|++.|.||++||++||+|+|.|+ ||||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~--i~HP 81 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK--IFHP 81 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC--CcCC
Confidence 34899999999999999999999998877 99999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|||.+|+|||+||+ +.|+|++ +|.+||++||+||.+||+ ++|+..
T Consensus 82 NV~~~G~vCLdIL~-------~~WsP~~-~l~sILlsl~slL~~PN~--~~Pln~ 126 (153)
T COG5078 82 NVDPSGNVCLDILK-------DRWSPVY-TLETILLSLQSLLLSPNP--DSPLNT 126 (153)
T ss_pred CcCCCCCChhHHHh-------CCCCccc-cHHHHHHHHHHHHcCCCC--CCCCCh
Confidence 99999999999999 7999995 999999999999999999 999654
No 4
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-38 Score=291.08 Aligned_cols=143 Identities=31% Similarity=0.581 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcC
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY 392 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 392 (588)
+.+||.||++.|++++|+||.+.+.++|+.+|+|+|.||.|||||||+|+++|.||++||++||+|+|+|+ ||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk--IyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK--IYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc--cccCCcC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHH
Q 046867 393 NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK 469 (588)
Q Consensus 393 ~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~k 469 (588)
..|+|||+||+ ..|+|+. ||..||+||++||.+||| ++|....++ ...+.+..+|++.++..+.+
T Consensus 80 ~~G~IclDILk-------~~WsPAl-~i~~VllsI~sLL~~Pnp--ddPL~~~ia--~~~k~d~~~~~~~ARewt~k 144 (148)
T KOG0417|consen 80 SNGRICLDILK-------DQWSPAL-TISKVLLSICSLLSDPNP--DDPLVPDIA--ELYKTDRAKYERTAREWTRK 144 (148)
T ss_pred ccccchHHhhh-------ccCChhh-HHHHHHHHHHHHhcCCCC--CccccHHHH--HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999 6899995 999999999999999999 999776554 23444555555555544443
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2e-35 Score=277.55 Aligned_cols=142 Identities=28% Similarity=0.559 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcC
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY 392 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 392 (588)
+.|||++|+++|++++++||.+.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ ||||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~--i~HPNV~ 80 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK--IYHPNID 80 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC--CeeceEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHHHH
Q 046867 393 NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTML 472 (588)
Q Consensus 393 ~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ktm~ 472 (588)
.+|.|||++|+ +.|+|+. ||.+||++|++||.+||| ++|... .++
T Consensus 81 ~~G~iCl~iL~-------~~W~p~~-ti~~iL~~i~~ll~~P~~--~~pln~-------------------------~aa 125 (152)
T PTZ00390 81 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPEP--DDPLDT-------------------------SVA 125 (152)
T ss_pred CCCeEECccCc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCchHH-------------------------HHH
Confidence 99999999997 6999995 999999999999999999 899532 345
Q ss_pred HhhcCCCcchHHHHHHHHH
Q 046867 473 YTVRRPPKHFNDFVSGHFY 491 (588)
Q Consensus 473 ~~Lr~pPk~Fed~V~~HF~ 491 (588)
.++++.++.|++.+++..+
T Consensus 126 ~~~~~d~~~f~~~a~~~~~ 144 (152)
T PTZ00390 126 DHFKNNRADAEKVAREWNQ 144 (152)
T ss_pred HHHHHCHHHHHHHHHHHHH
Confidence 5667777788876655443
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-35 Score=267.54 Aligned_cols=139 Identities=30% Similarity=0.596 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
..+.+||+++++.|++++|.||++.+.++|+.+|.|+|+||.+|||+||+|++.|.|+.+||.+||.|+|.|. .||||
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~--mFHPN 80 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK--MFHPN 80 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee--ccCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHH
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERA 463 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v 463 (588)
||.+|.|||+||. ..|+|.+ ++..||+|||+||.+||| +.|... .+.....++.+.|+.++
T Consensus 81 vya~G~iClDiLq-------NrWsp~Y-dva~ILtsiQslL~dPn~--~sPaN~--eAA~Lf~e~~rey~rrV 141 (152)
T KOG0419|consen 81 VYADGSICLDILQ-------NRWSPTY-DVASILTSIQSLLNDPNP--NSPANS--EAARLFSENKREYERRV 141 (152)
T ss_pred cCCCCcchHHHHh-------cCCCCch-hHHHHHHHHHHHhcCCCC--CCcccH--HHHHHHhhChHHHHHHH
Confidence 9999999999998 6999985 999999999999999999 999543 22233334444444433
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-34 Score=270.50 Aligned_cols=143 Identities=29% Similarity=0.585 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcC
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY 392 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 392 (588)
+.+||++|+++|++++++|+.+.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ +|||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK--IYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC--cccceEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHHHH
Q 046867 393 NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTML 472 (588)
Q Consensus 393 ~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ktm~ 472 (588)
.+|.|||++|+ +.|+|++ ||.+||++|++||.+||+ ++|... .++
T Consensus 80 ~~G~iCl~il~-------~~W~p~~-ti~~il~~i~~ll~~P~~--~~p~n~-------------------------~aa 124 (147)
T PLN00172 80 SNGSICLDILR-------DQWSPAL-TVSKVLLSISSLLTDPNP--DDPLVP-------------------------EIA 124 (147)
T ss_pred CCCEEEcccCc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCchHH-------------------------HHH
Confidence 99999999997 6999995 999999999999999999 888432 334
Q ss_pred HhhcCCCcchHHHHHHHHHh
Q 046867 473 YTVRRPPKHFNDFVSGHFYQ 492 (588)
Q Consensus 473 ~~Lr~pPk~Fed~V~~HF~~ 492 (588)
.++++.++.|++.++++.++
T Consensus 125 ~~~~~~~~~f~~~a~~~~~~ 144 (147)
T PLN00172 125 RVFKENRSRYEATAREWTQR 144 (147)
T ss_pred HHHHHCHHHHHHHHHHHHHH
Confidence 55666777888877665544
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-32 Score=262.69 Aligned_cols=121 Identities=33% Similarity=0.639 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhCC---CCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 313 LVKRIQEEWKILENDL---PDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 313 a~KRL~kELk~L~k~~---P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
+.+||++|++++..+. -.||.+....+++..+++.|.||+|||||||.|.++|.||.+|||+||+|+|.|+ ||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk--IwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK--IWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee--eecC
Confidence 7899999999999887 5899999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 390 NLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 390 NVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
||. .+|.|||++|. ..|.+++ ||.++|+|||+||.+|+| +||.++.
T Consensus 82 nVSs~tGaICLDilk-------d~Wa~sl-TlrtvLislQalL~~pEp--~dPqDav 128 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-------DQWAASL-TLRTVLISLQALLCAPEP--KDPQDAV 128 (200)
T ss_pred CCCcccccchhhhhh-------cccchhh-hHHHHHHHHHHHHcCCCC--CChHHHH
Confidence 998 89999999999 7999997 999999999999999999 9996653
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=1.2e-31 Score=245.83 Aligned_cols=117 Identities=38% Similarity=0.720 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCC-CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcCCC
Q 046867 316 RIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC 394 (588)
Q Consensus 316 RL~kELk~L~k~~P~gI~V~p~ed-nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 394 (588)
||++|++.|+++++.||.+.+.++ |+..|+++|.||.||||+||.|+|+|.||++||++||+|+|.|+ ||||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~--i~HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP--IFHPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS---SBTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc--ccccccccc
Confidence 899999999999999999999886 99999999999999999999999999999999999999999999 999999999
Q ss_pred CceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCc
Q 046867 395 GKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGW 443 (588)
Q Consensus 395 GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~ 443 (588)
|+|||++|+. +.|+|++ +|.+||++|++||.+|++ ++|..
T Consensus 79 G~icl~~l~~------~~W~p~~-~i~~il~~i~~ll~~p~~--~~~~n 118 (140)
T PF00179_consen 79 GRICLDILNP------ESWSPSY-TIESILLSIQSLLSEPNP--EDPLN 118 (140)
T ss_dssp SBBGHGGGTT------TTC-TTS-HHHHHHHHHHHHHHSTCT--TSTSS
T ss_pred ccchhhhhhc------ccCCccc-ccccHHHHHHHHHhCCCC--CCcch
Confidence 9999999983 4699985 999999999999988877 88854
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=244.41 Aligned_cols=154 Identities=25% Similarity=0.457 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEec-CCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVY-ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~-ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
+..-|+++|+.|++.+.+|+.+... +.|+..|.+.|+||++|+||||.|+..+.||.+||.+||+++|.|+ +|||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~--mwHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK--MWHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh--hcCCCc
Confidence 5677899999999999999999864 5599999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceeeecccccC------CCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHH
Q 046867 392 YNCGKVCLSLLNTWD------GDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFI 465 (588)
Q Consensus 392 y~~GkVCLSlL~tW~------G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~ 465 (588)
|.+|+||+|||.... +..+|.|+|.. |+.+||+||.+||.+||- +.|+ ++.+
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~-tvetIllSiIsmL~~PN~--~SPA--NVDA----------------- 141 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQ-TVETILLSIISMLNSPND--ESPA--NVDA----------------- 141 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCcc-chhHhHHHHHHHHcCCCC--CCcc--chHH-----------------
Confidence 999999999997542 13578999985 999999999999999887 7883 3322
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHhcHHH
Q 046867 466 LSLKTMLYTVRRPPKHFNDFVSGHFYQRAHD 496 (588)
Q Consensus 466 ~s~ktm~~~Lr~pPk~Fed~V~~HF~~~a~~ 496 (588)
+..+|..+++|.+.|+.++++....
T Consensus 142 ------a~~~Ren~~EykkkV~r~vr~s~e~ 166 (171)
T KOG0425|consen 142 ------AKEWRENPEEYKKKVRRCVRRSQEE 166 (171)
T ss_pred ------HHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 3445556667777776666654443
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=240.56 Aligned_cols=143 Identities=30% Similarity=0.559 Sum_probs=121.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYE-----SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG 384 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~e-----dnl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 384 (588)
+..++.||+.|-+.+.++.|-|+++++.. .|+..|.|.|.|+.|||||||.|.+.+.||++||..||+|+|.++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p- 80 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP- 80 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC-
Confidence 34568999999999999999999998753 368899999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHH
Q 046867 385 LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAF 464 (588)
Q Consensus 385 ~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~ 464 (588)
.||||||.+|.||||||+. ..+|+|+. ||.|||+.||.||.+||+ .+|+. ..+....+++...|.++++
T Consensus 81 -l~HPNVypsgtVcLsiL~e-----~~~W~pai-tikqiL~gIqdLL~~Pn~--~~pAq--~eA~~~~~~~r~eYekrvr 149 (158)
T KOG0424|consen 81 -LFHPNVYPSGTVCLSILNE-----EKDWRPAI-TIKQILLGIQDLLDTPNI--TSPAQ--TEAYTIYCQDRAEYEKRVR 149 (158)
T ss_pred -CcCCCcCCCCcEehhhhcc-----ccCCCchh-hHHHHHHHHHHHhcCCCC--CCchh--hHHHHHHhhCHHHHHHHHH
Confidence 9999999999999999983 23599998 999999999999999999 88843 2223333344444444443
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=235.95 Aligned_cols=123 Identities=28% Similarity=0.566 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEe-cCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRV-YESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p-~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
..++|||++|+++|..++|+||.+.+ .|+|.+.|.|+|.||+||||+||+|-.++.||.+||..||+++|.-. +|||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~--~fHP 80 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE--MFHP 80 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc--cccC
Confidence 56899999999999999999999876 68899999999999999999999999999999999999999999988 9999
Q ss_pred CcCCCCceeeecccccCCC------CCCCCccccccHHHHHHHHHHHhcccCC
Q 046867 390 NLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVSIQALILNERP 436 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~------~~E~WsPa~sTI~qVLlSIQsLLl~PnP 436 (588)
|||.+|+||+|||....++ ..|.|+|.. ++..||+|+.+||..||-
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQ-SvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQ-SVEKILLSVVSMLAEPND 132 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHH-HHHHHHHHHHHHHcCCCc
Confidence 9999999999999865433 368999985 999999999999977664
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=1.8e-30 Score=238.44 Aligned_cols=139 Identities=33% Similarity=0.568 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcCCC
Q 046867 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC 394 (588)
Q Consensus 315 KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 394 (588)
|||++|+++|+++++.|+++.+.++|+..|+++|.||++|||+||+|.|+|.||++||++||+|+|.|+ +|||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~--i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK--IYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC--cccCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHHHHHh
Q 046867 395 GKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYT 474 (588)
Q Consensus 395 GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ktm~~~ 474 (588)
|.||+++|.. +.|+|++ +|.+||++|+++|.+|++ ++|... .++.+
T Consensus 80 G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~-------------------------~aa~~ 125 (141)
T cd00195 80 GKICLSILKT------HGWSPAY-TLRTVLLSLQSLLNEPNP--SDPLNA-------------------------EAAKL 125 (141)
T ss_pred CCCchhhcCC------CCcCCcC-cHHHHHHHHHHHHhCCCC--CCchhH-------------------------HHHHH
Confidence 9999999983 2599996 899999999999997776 777321 34455
Q ss_pred hcCCCcchHHHHHHH
Q 046867 475 VRRPPKHFNDFVSGH 489 (588)
Q Consensus 475 Lr~pPk~Fed~V~~H 489 (588)
+++.++.|++.|+++
T Consensus 126 ~~~~~~~f~~~~~~~ 140 (141)
T cd00195 126 YKENREEFKKKAREW 140 (141)
T ss_pred HHHCHHHHHHHHHHh
Confidence 666677777766654
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=1.3e-29 Score=233.74 Aligned_cols=117 Identities=38% Similarity=0.679 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCC-CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcCC
Q 046867 315 KRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYN 393 (588)
Q Consensus 315 KRL~kELk~L~k~~P~gI~V~p~ed-nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~ 393 (588)
+||++|++.|+++++.|+.|.+.++ |+..|+++|.||.+|||+||+|.|.|.||++||+.||+|+|.|+ +||||||.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~--i~Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK--IYHPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC--ceEeeECC
Confidence 5999999999999999999988775 99999999999999999999999999999999999999999999 99999999
Q ss_pred CCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCC
Q 046867 394 CGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPG 442 (588)
Q Consensus 394 ~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg 442 (588)
+|.||+++|.. +.|+|++ +|.+||++|++||.+|++ ++|.
T Consensus 79 ~G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~ 118 (145)
T smart00212 79 SGEICLDILKQ------EKWSPAT-TLETVLLSIQSLLSEPNP--DSPL 118 (145)
T ss_pred CCCEehhhcCC------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcc
Confidence 99999999973 5899995 999999999999999877 7884
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-28 Score=228.31 Aligned_cols=122 Identities=25% Similarity=0.412 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
.....|||++||..|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|+|+ .|||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp--c~HP 104 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP--CFHP 104 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc--ccCC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCc
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGW 443 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~ 443 (588)
||+..|.|||+||. +.|+..+ ++.+||+|||+||-+||- ..|..
T Consensus 105 NVD~~GnIcLDILk-------dKWSa~Y-dVrTILLSiQSLLGEPNn--~SPLN 148 (175)
T KOG0421|consen 105 NVDLSGNICLDILK-------DKWSAVY-DVRTILLSIQSLLGEPNN--SSPLN 148 (175)
T ss_pred CccccccchHHHHH-------HHHHHHH-hHHHHHHHHHHHhCCCCC--CCcch
Confidence 99999999999999 8999985 999999999999988876 67743
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-27 Score=230.23 Aligned_cols=166 Identities=23% Similarity=0.454 Sum_probs=143.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccC
Q 046867 309 PSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLN 388 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfH 388 (588)
+++.+.|||+||++.|+++++++|.+++.++|+.+|+.+|.||+||||+||.|+..|.||++||++||.|+++|+++||-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHH
Q 046867 389 PNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSL 468 (588)
Q Consensus 389 PNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ 468 (588)
+| -++|||+-. .+++.|+|. |++.+||.++.++|++ ++|..+++..+.. ..+.++.
T Consensus 82 tn----tRLCLSiSD----fHPdsWNP~-WsVStILtGLlSFM~e-----~~pTtGSI~tS~~----------~kr~lA~ 137 (244)
T KOG0894|consen 82 TN----TRLCLSISD----FHPDSWNPG-WSVSTILTGLLSFMTE-----DSPTTGSIETSDQ----------DKRMLAK 137 (244)
T ss_pred cC----ceEEEeccc----cCcCcCCCc-ccHHHHHHHHHHHHhc-----CCCccCcccccHH----------HHHHHHH
Confidence 99 899999865 789999998 7999999999999988 7888888876532 2334455
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHhcHHHHHHH
Q 046867 469 KTMLYTVRRPPKHFNDFVSGHFYQRAHDILAA 500 (588)
Q Consensus 469 ktm~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~ 500 (588)
.+.++.++++ .|.++.-+.+.+..++.+++
T Consensus 138 ~SlaFN~kn~--~F~~lFPE~Vee~nq~~~a~ 167 (244)
T KOG0894|consen 138 SSLAFNLKNP--KFCELFPEVVEEYNQEQLAK 167 (244)
T ss_pred hhhhhccCCh--HHHHHhHHHHHHHHHHHHHh
Confidence 5677777764 67777777777655544443
No 17
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-26 Score=212.11 Aligned_cols=143 Identities=24% Similarity=0.473 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCe-EEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 312 KLVKRIQEEWKILENDLPDTI-FVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI-~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
.+.+||+|||.+|+++....+ -++..+.+++.|.++|+ |.+-||..|.|.+.|.||.+|||+||+++|.|+ |||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk--iYHpN 78 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK--IYHPN 78 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeee--eccCC
Confidence 357899999999999988765 35678899999999998 788899999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHH
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKT 470 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~kt 470 (588)
|++.|.|||.||.+ |+|.|++ ++.|||+++.+|+.+|+| ..|... .
T Consensus 79 VDe~gqvClPiis~------EnWkP~T-~teqVlqaLi~liN~P~p--e~plr~-------------------------d 124 (153)
T KOG0422|consen 79 VDEKGQVCLPIISA------ENWKPAT-RTEQVLQALIALINDPEP--EHPLRI-------------------------D 124 (153)
T ss_pred CCCCCceeeeeeec------ccccCcc-cHHHHHHHHHHHhcCCCc--cccchh-------------------------h
Confidence 99999999999986 9999997 999999999999999998 777432 3
Q ss_pred HHHhhcCCCcchHHHHHHHHH
Q 046867 471 MLYTVRRPPKHFNDFVSGHFY 491 (588)
Q Consensus 471 m~~~Lr~pPk~Fed~V~~HF~ 491 (588)
+++.+.+.++.|.....++.+
T Consensus 125 lA~ey~~d~~kF~K~Aee~tk 145 (153)
T KOG0422|consen 125 LAEEYIKDPKKFVKNAEEFTK 145 (153)
T ss_pred HHHHHHHCHHHHHHhHHHHHH
Confidence 455666666766664444333
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-25 Score=212.57 Aligned_cols=154 Identities=29% Similarity=0.508 Sum_probs=132.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCc
Q 046867 306 LEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGL 385 (588)
Q Consensus 306 ~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 385 (588)
..+.+...+|.|++|++.|..++|+||.|.+.++|+..+.+.|.||.||||++|+|+..+.+..+||..||+-+|+|+
T Consensus 4 nenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK-- 81 (223)
T KOG0423|consen 4 NENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK-- 81 (223)
T ss_pred ccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee--
Confidence 356678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHH
Q 046867 386 RLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFI 465 (588)
Q Consensus 386 IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~ 465 (588)
||||||-.+|.||.+.|. .+|+|.. .|..||+.|.+||..||| ... .+...|+.-...|.+.++.
T Consensus 82 IFHPNVaaNGEICVNtLK-------kDW~p~L-GirHvLltikCLLI~PnP--ESA-----LNEeAGkmLLEnYdeYa~r 146 (223)
T KOG0423|consen 82 IFHPNVAANGEICVNTLK-------KDWNPSL-GIRHVLLTIKCLLIEPNP--ESA-----LNEEAGKMLLENYDEYARR 146 (223)
T ss_pred eccCCcccCceehhhhhh-------cccCccc-chhhHhhhhheeeecCCh--HHH-----HhHHHHHHHHHhHHHHHHH
Confidence 999999999999999998 6999997 999999999999999999 333 3333455555566666655
Q ss_pred HHHHHHHHhhc
Q 046867 466 LSLKTMLYTVR 476 (588)
Q Consensus 466 ~s~ktm~~~Lr 476 (588)
..+.+-++.--
T Consensus 147 ARl~TeIHa~p 157 (223)
T KOG0423|consen 147 ARLYTEIHAKP 157 (223)
T ss_pred HHHHHHhhcCC
Confidence 55444444433
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.5e-25 Score=209.37 Aligned_cols=151 Identities=25% Similarity=0.461 Sum_probs=123.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEEe--cCCCCc--eEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCC
Q 046867 309 PSNKLVKRIQEEWKILENDLPDTIFVRV--YESRMD--LLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG 384 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~~P~gI~V~p--~ednl~--~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 384 (588)
..+.++-||++++.+| ++|+++.... ..+++. .++.+|. |....|+||.|.|.+.+|+.||+.||+|+|+|+
T Consensus 25 ~~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk- 100 (184)
T KOG0420|consen 25 KVSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK- 100 (184)
T ss_pred cccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec-
Confidence 3455667777776665 5888876432 233444 4777777 777799999999999999999999999999999
Q ss_pred cccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHH
Q 046867 385 LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAF 464 (588)
Q Consensus 385 ~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~ 464 (588)
+|||||+.+|.|||+||+ ++|+|.. +|.+|+.+++.|+++||| +||..
T Consensus 101 -V~HPNId~~GnVCLnILR-------edW~P~l-nL~sIi~GL~~LF~epn~--eDpLN--------------------- 148 (184)
T KOG0420|consen 101 -VYHPNIDLDGNVCLNILR-------EDWRPVL-NLNSIIYGLQFLFLEPNP--EDPLN--------------------- 148 (184)
T ss_pred -cccCCcCCcchHHHHHHH-------hcCcccc-chHHHHHHHHHHhccCCC--ccccc---------------------
Confidence 999999999999999999 8999996 999999999999999997 99953
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHhcHHHHHHHHHHHhccCcccccc
Q 046867 465 ILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLV 514 (588)
Q Consensus 465 ~~s~ktm~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~~k~~~~ga~vg~~~ 514 (588)
+.++.++++.++.|+. +++.+|.|..+|...
T Consensus 149 ----~eAA~~l~~n~e~F~~---------------~Vr~~m~gg~v~~~~ 179 (184)
T KOG0420|consen 149 ----KEAAAVLKSNREGFEN---------------NVRRAMSGGCVGQTS 179 (184)
T ss_pred ----HHHHHHHHhCHHHHHH---------------HHHHHHhcCccCcee
Confidence 3566788889999999 566777776666543
No 20
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-24 Score=202.77 Aligned_cols=143 Identities=21% Similarity=0.416 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcC-
Q 046867 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY- 392 (588)
Q Consensus 314 ~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy- 392 (588)
-|||..++..|.. .+..|....+.+..+.+.+.||.+|||+||+|++.|.+|++||++.|.|.|.|+ ||||||+
T Consensus 5 ~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK--IfHPNIDe 79 (189)
T KOG0416|consen 5 KRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK--IFHPNIDE 79 (189)
T ss_pred ccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--ccCCCchh
Confidence 4789998888865 456788999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeeecccccCCCCCCCCccccccHHHHHHHH-HHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHHH
Q 046867 393 NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSI-QALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTM 471 (588)
Q Consensus 393 ~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSI-QsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ktm 471 (588)
.+|.|||++|+ +.|+|.+ .|..|+.++ -.||..||| .||... .+
T Consensus 80 ~SGsVCLDViN-------QtWSp~y-DL~NIfetfLPQLL~YPNp--~DPLN~-------------------------eA 124 (189)
T KOG0416|consen 80 ASGSVCLDVIN-------QTWSPLY-DLVNIFETFLPQLLRYPNP--SDPLNG-------------------------EA 124 (189)
T ss_pred ccCccHHHHHh-------hhhhHHH-HHHHHHHHHhHHHhcCCCC--CCCccc-------------------------HH
Confidence 89999999999 6999985 999999665 589999999 999653 23
Q ss_pred HHhhcCCCcchHHHHHHHHHhcHHH
Q 046867 472 LYTVRRPPKHFNDFVSGHFYQRAHD 496 (588)
Q Consensus 472 ~~~Lr~pPk~Fed~V~~HF~~~a~~ 496 (588)
+.++.+.|+.|++.|++++.+.|..
T Consensus 125 Aal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 125 AALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 3456667899999999988887754
No 21
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-23 Score=191.49 Aligned_cols=118 Identities=27% Similarity=0.524 Sum_probs=110.0
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc
Q 046867 307 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR 386 (588)
Q Consensus 307 ~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I 386 (588)
+..+..+.+||||||.+|+.++|.|+.++ ..+|+..|.+-+.|.+||.|+|..|.+.+.||+.||+..|.|.|..+ ..
T Consensus 10 k~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~-~P 87 (161)
T KOG0427|consen 10 KALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP-AP 87 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-CC
Confidence 34457789999999999999999999988 47789999999999999999999999999999999999999999987 67
Q ss_pred cCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhccc
Q 046867 387 LNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNE 434 (588)
Q Consensus 387 fHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~P 434 (588)
.||+||.+|.|||+||. +.|+|++ ++.+|++||.+||.+.
T Consensus 88 ~HPHiYSNGHICL~iL~-------d~WsPAm-sv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILY-------DSWSPAM-SVQSVCLSILSMLSSS 127 (161)
T ss_pred CCCceecCCeEEEEeec-------ccCCcch-hhHHHHHHHHHHHccC
Confidence 89999999999999998 7999998 9999999999999764
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-19 Score=179.24 Aligned_cols=113 Identities=27% Similarity=0.453 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccC
Q 046867 309 PSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLN 388 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfH 388 (588)
....+.|||++|.++|+ ++.+-+.+.+.|+|+++|+.+|.||.||-|+||+|+.+|.||.+||++||.+..+|+++||-
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE 86 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE 86 (314)
T ss_pred ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee
Confidence 34668999999999999 67777888999999999999999999999999999999999999999999999999988998
Q ss_pred CCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHh
Q 046867 389 PNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431 (588)
Q Consensus 389 PNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLL 431 (588)
-| -+|||||-+ .++|.|.|+ |+|.+.|++|.++|
T Consensus 87 ~n----kKiCLSISg----yHPEtWqPS-WSiRTALlAlIgFm 120 (314)
T KOG0428|consen 87 VN----KKICLSISG----YHPETWQPS-WSIRTALLALIGFM 120 (314)
T ss_pred eC----ceEEEEecC----CCccccCcc-hhHHHHHHHHHccc
Confidence 87 899999965 789999999 79999999999998
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.3e-15 Score=144.46 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCC--CCCcccccCCCcccCCCcC
Q 046867 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPN--VPPNVHYHSGGLRLNPNLY 392 (588)
Q Consensus 315 KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~--~PPkV~F~T~~~IfHPNVy 392 (588)
-.|..|+....+...+||+|.|.-.+-.+|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.+. .|||.|.
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~--vfHP~ic 98 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS--VFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc--ccccccC
Confidence 467778888888899999999999999999999999999 8999999999999999995 6899999999 9999999
Q ss_pred -CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHHH
Q 046867 393 -NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTM 471 (588)
Q Consensus 393 -~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ktm 471 (588)
.++.+||+-.. ..|.-....|++||+.||.++.+|+- .-+..-+..+.....+....|.+++......+-
T Consensus 99 p~skeLdl~raf-------~eWRk~ehhiwqvL~ylqriF~dpd~--si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr 169 (258)
T KOG0429|consen 99 PKSKELDLNRAF-------PEWRKEEHHIWQVLVYLQRIFYDPDV--SIDKLINPEAAVLYKKHRDEFRERVQECVKASR 169 (258)
T ss_pred CCccceeHhhhh-------hhhhccccHHHHHHHHHHHHhcCccc--chhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78999997654 35988778999999999999988665 333233445556677777777777764443332
Q ss_pred HHhhcCCCc---------chHHHHHHHHHhcHH
Q 046867 472 LYTVRRPPK---------HFNDFVSGHFYQRAH 495 (588)
Q Consensus 472 ~~~Lr~pPk---------~Fed~V~~HF~~~a~ 495 (588)
..++..||. -|...+..-++++-.
T Consensus 170 ~~iyD~ppteDPhyI~~ep~~a~~H~~a~ekm~ 202 (258)
T KOG0429|consen 170 SMIYDEPPTEDPHYIRFEPWDALVHKAAREKML 202 (258)
T ss_pred HHhcCCCCCCCCCeEEeecCChHhhHHHHHHHh
Confidence 334555654 255555555554433
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.6e-08 Score=92.49 Aligned_cols=109 Identities=19% Similarity=0.349 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEE-e-cCCC--CceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 314 VKRIQEEWKILENDLPDTIFVR-V-YESR--MDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 314 ~KRL~kELk~L~k~~P~gI~V~-p-~edn--l~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
.-||.+||..=++..-+|..-. . +.++ +..|-++|+||+-|+||+-+|.+.|.+.++||..||.|+|.|+ +--+
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk--inm~ 84 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK--INMN 84 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE--eeec
Confidence 3478888887777665554222 2 2334 4579999999999999999999999999999999999999997 5555
Q ss_pred CcC-CCCcee---eecccccCCCCCCCCccccccHHHHHHHHHHHhcc
Q 046867 390 NLY-NCGKVC---LSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433 (588)
Q Consensus 390 NVy-~~GkVC---LSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~ 433 (588)
-|. .+|.|- +..| ++|.-.+ +|..||..++-+++.
T Consensus 85 gvn~~~g~Vd~~~i~~L--------~~W~~~y-~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVL--------ARWQRSY-SIKMVLGQLRKEMMS 123 (138)
T ss_pred ccccCCCccCccccchh--------hcccccc-hhhHHHHhhhHHHHH
Confidence 555 556653 2334 4888885 999999999865543
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.72 E-value=5.5e-05 Score=70.01 Aligned_cols=68 Identities=29% Similarity=0.554 Sum_probs=58.6
Q ss_pred CCceEEEEEECCCCCCCCCCcccccCCCc-ccCCCcCCCCceee---ecccccCCCCCCCCccccccHHHHHHHHHHHhc
Q 046867 357 HDGLFFFDVFFPSDYPNVPPNVHYHSGGL-RLNPNLYNCGKVCL---SLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL 432 (588)
Q Consensus 357 eGG~F~fdI~FP~dYP~~PPkV~F~T~~~-IfHPNVy~~GkVCL---SlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl 432 (588)
.|+.|.+.|.||+.||..||.|....+.. .+-|+|+.+|.||+ .+.- +.|.|.. ++.++|..++.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~~-~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPEG-IIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHHH-HHHHHHHHHHHHHH
Confidence 68999999999999999999999886532 27899999999999 4433 6899985 99999999999985
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00017 Score=66.00 Aligned_cols=59 Identities=22% Similarity=0.496 Sum_probs=49.7
Q ss_pred EEEEECCCCCCCCCCcccccCCCcccCCCcC-----CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcc
Q 046867 362 FFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY-----NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433 (588)
Q Consensus 362 ~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy-----~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~ 433 (588)
.+.+.|+++||+.||.++-.. |.++ .+|.||+-||.+ ++|+.+ +++..+++.|.+.+..
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~------p~~~~Gyvl~ggAIcmellt~------qgwssa-y~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVK------PLEDEGYVLEGGAICMELLTK------QGWSSA-YEVERVIMQIAATLVK 77 (122)
T ss_pred EeeeecccCCCCCCCcceeee------ecccCCEEecchhhHHHHHcc------ccccch-hhHHHHHHHHHHHhhc
Confidence 456789999999999998554 4444 679999999985 899998 5999999999998866
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.42 E-value=0.00041 Score=63.78 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=55.0
Q ss_pred ceEEEEEEcCCCCCcCCceEE--EEEECCCCCCCCCCcccccCC---CcccCCCcCCCCceeeecccccCCCCCCCCccc
Q 046867 342 DLLRAVIVGAEGTPYHDGLFF--FDVFFPSDYPNVPPNVHYHSG---GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPS 416 (588)
Q Consensus 342 ~~w~avI~GP~gTPYeGG~F~--fdI~FP~dYP~~PPkV~F~T~---~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa 416 (588)
..+.++|.- .|.|..|. +.|.||.+||..||.|..... ..+-+.+|+.+|+|++..|. .|++.
T Consensus 33 L~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~--------~W~~~ 100 (121)
T PF05743_consen 33 LCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ--------NWNPP 100 (121)
T ss_dssp EEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH--------T--TT
T ss_pred EEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc--------cCCCC
Confidence 344555542 58888885 567789999999999977532 23445599999999999997 67775
Q ss_pred cccHHHHHHHHHHHhcc
Q 046867 417 MSTMLQVLVSIQALILN 433 (588)
Q Consensus 417 ~sTI~qVLlSIQsLLl~ 433 (588)
.++|.+++..++..+..
T Consensus 101 ~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 101 SSNLVDLVQELQAVFSE 117 (121)
T ss_dssp TS-HHHHHHHHHHCCCH
T ss_pred CCCHHHHHHHHHHHHhH
Confidence 57999999988887754
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.12 E-value=0.00041 Score=65.78 Aligned_cols=87 Identities=22% Similarity=0.374 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCce----------EEEEEECCCCCCCCCCccc
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGL----------FFFDVFFPSDYPNVPPNVH 379 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~----------F~fdI~FP~dYP~~PPkV~ 379 (588)
...|..||..|+..|-+ +|....++-..|.-+=.-+.||-|.|-+ |.|.+.+|..||..||.+.
T Consensus 22 ~~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 22 GDLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCccee
Confidence 37899999999999864 3333333333444333557777777654 4456677999999999997
Q ss_pred ccCCCcccCCCcCCCCceeeeccc
Q 046867 380 YHSGGLRLNPNLYNCGKVCLSLLN 403 (588)
Q Consensus 380 F~T~~~IfHPNVy~~GkVCLSlL~ 403 (588)
.-.=. ---.-.|..|+|||++-.
T Consensus 96 lPeLd-GKTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 96 LPELD-GKTAKMYRGGKICLTDHF 118 (161)
T ss_dssp -GGGT-TT-SSBCCCCBB---TTH
T ss_pred ccccC-CchhhhhcCceEeeeccc
Confidence 63200 002357889999998753
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.016 Score=61.82 Aligned_cols=78 Identities=21% Similarity=0.472 Sum_probs=62.2
Q ss_pred CCcCCceEEEE--EECCCCCCCCCCcccccCC---CcccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHH
Q 046867 354 TPYHDGLFFFD--VFFPSDYPNVPPNVHYHSG---GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQ 428 (588)
Q Consensus 354 TPYeGG~F~fd--I~FP~dYP~~PPkV~F~T~---~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQ 428 (588)
++|.|.+|.+= |.+.+.||..||.|..... ....|-+|+.+|+|.|..|. +|.|.-++|..++.-+.
T Consensus 61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVGLIQELI 132 (365)
T ss_pred ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHHHHHHHH
Confidence 57999888754 5679999999999866421 12238999999999999997 88887788988888888
Q ss_pred HHhcccCCCCC
Q 046867 429 ALILNERPYFN 439 (588)
Q Consensus 429 sLLl~PnPyfn 439 (588)
+.+..+.|.+.
T Consensus 133 a~f~~~pP~ys 143 (365)
T KOG2391|consen 133 AAFSEDPPVYS 143 (365)
T ss_pred HHhcCCCcccc
Confidence 88887766554
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.024 Score=53.41 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCce--------EEEE--EECCCCCCCCCCccc
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGL--------FFFD--VFFPSDYPNVPPNVH 379 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~--------F~fd--I~FP~dYP~~PPkV~ 379 (588)
...|..||..|++.|-. +|.-..++-..|.-+=..++||-|-|.+ |.|+ +.+|-.||...|.+.
T Consensus 25 ~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred chHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 46789999999999864 3333333444455444678999998865 3444 556999999999986
Q ss_pred ccCCCcccCCCcCCCCceeeecc
Q 046867 380 YHSGGLRLNPNLYNCGKVCLSLL 402 (588)
Q Consensus 380 F~T~~~IfHPNVy~~GkVCLSlL 402 (588)
.---. -----.|..|+|||.--
T Consensus 99 lpeld-gktakmyrggkiclt~h 120 (167)
T KOG3357|consen 99 LPELD-GKTAKMYRGGKICLTDH 120 (167)
T ss_pred ccccC-chhhhhhcCceEeeccc
Confidence 53100 00123578899999643
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.39 E-value=0.28 Score=45.84 Aligned_cols=94 Identities=20% Similarity=0.376 Sum_probs=61.7
Q ss_pred CeEEEecCCCCceEEEEEEc---CCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcC-CC-Cce--eeeccc
Q 046867 331 TIFVRVYESRMDLLRAVIVG---AEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY-NC-GKV--CLSLLN 403 (588)
Q Consensus 331 gI~V~p~ednl~~w~avI~G---P~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy-~~-GkV--CLSlL~ 403 (588)
|+.+....+.-..|-+ |.| |+| .|....-.+-|.+|+.||..+|-+.|..+ -+- .+ |.| |-+...
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P------~L~~~~G~~iP~~~~~~~ 84 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYP------PLKLADGGPIPNAAEVTQ 84 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECC------ceEccCCCcCCchhcchh
Confidence 4555443332333332 444 666 69999999999999999999998877665 222 22 334 544433
Q ss_pred ccCC-------CCCCCCccccccHHHHHHHHHHHhc
Q 046867 404 TWDG-------DKNEKWIPSMSTMLQVLVSIQALIL 432 (588)
Q Consensus 404 tW~G-------~~~E~WsPa~sTI~qVLlSIQsLLl 432 (588)
+..| .+...|+|...+|.+.|.-|...|.
T Consensus 85 ~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 85 TFDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred hcCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 2222 3478999988899999998887663
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=91.18 E-value=0.32 Score=42.16 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEE--cCCCCCcCCceEEEEEECCCCCCCCCCcccccCC
Q 046867 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIV--GAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 315 KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~--GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
.+...|+..|+.--+..+ ......+...+.+.+. ....+.-....+.+.|.||++||..||.|...+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467788988886544443 1222334445666662 2334445567899999999999999999987764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=88.76 E-value=1.6 Score=37.54 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.7
Q ss_pred CCceEEEEEECCCCCCCCCCcccccCC
Q 046867 357 HDGLFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 357 eGG~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
..-.+.+.|.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987654
No 34
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=81.80 E-value=0.48 Score=38.71 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHhcCchhhhhhhcccc
Q 046867 535 SIAGHCDLLIKEFTYIGVKDCENFLTQAK 563 (588)
Q Consensus 535 ~l~~~~~~Lv~~F~~~G~~d~~~~~~~~~ 563 (588)
++.|+.+.||++|+.||| +.+++++..+
T Consensus 4 ~~~Gi~~~lVd~F~~mGF-~~dkVvevlr 31 (55)
T PF09288_consen 4 ALYGIDKDLVDQFENMGF-ERDKVVEVLR 31 (55)
T ss_dssp S----SHHHHHHHHHHT---HHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCC-cHHHHHHHHH
Confidence 467999999999999999 7999987743
No 35
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=65.14 E-value=10 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=46.9
Q ss_pred EEEECCCCCCCCCCcccccCCCccc-CCCcCCC-----CceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcc
Q 046867 363 FDVFFPSDYPNVPPNVHYHSGGLRL-NPNLYNC-----GKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433 (588)
Q Consensus 363 fdI~FP~dYP~~PPkV~F~T~~~If-HPNVy~~-----GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~ 433 (588)
+.|.|+.+||..+|.|.+.-+...- +|+++.. ..+||..-. | ..|.+. +++..+|..|+.-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-~-----~e~~~~-~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-W-----SEWRPS-WGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-H-----HHhhhc-cCHHHHHHHHHHHHHH
Confidence 4589999999999987776442222 4777655 679997543 4 688888 4999999988877743
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=46.75 E-value=34 Score=36.37 Aligned_cols=91 Identities=16% Similarity=0.380 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
.....+|.+|+..|..+.. +.+. .++++..++..+..- .-.-.++|.+|.+||..+|.+..--+
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P------- 161 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLP------- 161 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TT-------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCC-------
Confidence 5667899999999986544 2332 355788888887732 25677899999999999997643332
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcc
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~ 433 (588)
+.+. ..|.+..++|..|+...+..|..
T Consensus 162 --------~~~~--------~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 162 --------IPFS--------LSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp --------S-HH--------HHHHCHT-SHHHHHHHHHHHHHH
T ss_pred --------cchh--------hhhcccccCHHHHHHHHHHHHHH
Confidence 2221 36888446888888888777744
No 37
>PF07267 Nucleo_P87: Nucleopolyhedrovirus capsid protein P87; InterPro: IPR009893 This family consists of several Nucleopolyhedrovirus capsid protein P87 sequences. P87 is expressed late in infection and concentrated in infected cell nuclei [].; GO: 0019028 viral capsid
Probab=34.52 E-value=3.6e+02 Score=32.02 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=52.9
Q ss_pred ccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHH--hhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 046867 414 IPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNM--YNERAFILSLKTMLYTVRRPPKHFNDFVSGHFY 491 (588)
Q Consensus 414 sPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~--YNe~v~~~s~ktm~~~Lr~pPk~Fed~V~~HF~ 491 (588)
+|.. +|.|=|-.|++|+.+-.| -.|....+. ..+-..++.. -+...|..++++++.-|++.|+. .+..-.-
T Consensus 30 ~pe~-sL~qKlD~l~~mv~s~~~--~~~~~~~~~-~~~~~~NS~l~~qd~~lR~~vl~~Av~Fl~r~~~v---~~~~~~l 102 (654)
T PF07267_consen 30 TPER-SLNQKLDALTSMVDSMPP--GGPSPANLR-AAEIQNNSILIAQDYVLRYRVLQTAVTFLRRAPRV---KVPAELL 102 (654)
T ss_pred Chhh-hHHHHHHHHHHHHHhcCC--CCCCCchhh-HHHHhhhhhHhhhhHHHHHHHHHHHHHHHHhcccc---CCcHHHH
Confidence 5664 899999999999988766 222112211 1222233332 33345777888888888877765 2333334
Q ss_pred hcHHHHHHHHHHHhcc
Q 046867 492 QRAHDILAACKAYMDG 507 (588)
Q Consensus 492 ~~a~~Il~~~k~~~~g 507 (588)
..-+..|.+++.|+.+
T Consensus 103 ~~iq~~L~~Ye~yvn~ 118 (654)
T PF07267_consen 103 DEIQNALQQYETYVNQ 118 (654)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4556777888888765
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.54 E-value=1.5e+02 Score=35.82 Aligned_cols=67 Identities=16% Similarity=0.325 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceE-EEEEECCCCCCC-CCCcccccCC
Q 046867 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLF-FFDVFFPSDYPN-VPPNVHYHSG 383 (588)
Q Consensus 315 KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F-~fdI~FP~dYP~-~PPkV~F~T~ 383 (588)
.-|.+|+.-|-..-+ .+.+.-.+---....+.+.||-- +=.|-+| ++.|+||.+||. .+|++.|.-+
T Consensus 423 QnLgeE~S~Ig~k~~-nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVKIR-NVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcccc-ccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 445556655543322 22222111112234455666554 2233333 677899999998 5899988754
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=26.35 E-value=1.1e+02 Score=33.34 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=34.9
Q ss_pred CceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 341 MDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 341 l~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
.+.++..| ||.|-...-+|.|-..||..||-+.|..- --|+|..
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD-~~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGED-DNFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCC-cCcCCCh
Confidence 45555555 69999999999999999999999999632 2588853
No 40
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=22.85 E-value=1.9e+02 Score=32.59 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=67.9
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCccC---------CccccCchhHHHHhhccccccccccCCCccchhccccCCCCC
Q 046867 239 NHLSFYDPFDNEDMPPEEPIDTPSGEDCS---------RNKESLDGDDVLMRFKLFKQFDAVEDHSDHYYASNVSSLEQP 309 (588)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~k~~~fk~fd~v~~~sdH~f~~~~ss~~~~ 309 (588)
+||+|-|+|.+.= -|+-|++|-+-... +-.--|.+.++.+.|. |++|+-|..-- -.|-.+.......
T Consensus 242 rlL~f~dqfPhYf--iGSNADLPIVGGSILsHDHyQgG~h~FpMakA~~eke~~-~~~fp~V~aGi-VKWPMSVlRL~s~ 317 (503)
T COG4468 242 RLLSFLDQFPHYF--IGSNADLPIVGGSILSHDHYQGGRHEFPMAKAELEKEFS-FKGFPDVSAGI-VKWPMSVLRLQSK 317 (503)
T ss_pred HHHHHHHhCCccc--ccCCCCCCcccceeccccccccccccccccccchhheee-ecCCCccccce-eecchhheeeccC
Confidence 6778888887653 47778777655433 2223456666665554 77787765411 1222222111111
Q ss_pred C----hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCC-----CCCCCCCcccc
Q 046867 310 S----NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPS-----DYPNVPPNVHY 380 (588)
Q Consensus 310 s----~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~-----dYP~~PPkV~F 380 (588)
. ..++-.|.+.|+... +.-.+|.+.. ++. -+-+|+--+ -=.||.|.+||.+=+ .||
T Consensus 318 nk~~L~~lAd~il~~Wr~YS-De~~~I~a~T--~dt--pHnTITPIA--RkR~~~yELDlVLRnNrT~e~yP-------- 382 (503)
T COG4468 318 NKVELIKLADKILKKWREYS-DEEVQILAYT--GDT--PHNTITPIA--RKRGGLYELDLVLRNNRTSEEYP-------- 382 (503)
T ss_pred CHHHHHHHHHHHHHHHHHhc-chhcceeecc--CCC--CCcccchhh--hhcCCeeEEEEEEecCCccccCC--------
Confidence 1 233445556665554 2334454332 221 112222100 125899999999854 455
Q ss_pred cCCCcccCCCc
Q 046867 381 HSGGLRLNPNL 391 (588)
Q Consensus 381 ~T~~~IfHPNV 391 (588)
.+||||+-
T Consensus 383 ---dGIFHPH~ 390 (503)
T COG4468 383 ---DGIFHPHQ 390 (503)
T ss_pred ---CcccCCcH
Confidence 34999973
No 41
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.16 E-value=1.4e+02 Score=30.26 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=47.7
Q ss_pred CccccCchhHHHHhhccccccccccCCCccchhccccCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEE
Q 046867 268 RNKESLDGDDVLMRFKLFKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAV 347 (588)
Q Consensus 268 ~~~~~~~~~~i~~k~~~fk~fd~v~~~sdH~f~~~~ss~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~av 347 (588)
-++.+...-|++.||+ |++-.+ . ............-.+|||+|++.+.+.....+..-|.=+-...+.++
T Consensus 85 lvI~~~~tgEvlErWq----Fnie~~-~-----~~~d~~na~~~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvL 154 (203)
T KOG3285|consen 85 LVITSKHTGEVLERWQ----FNIETE-N-----TASDGQNATRVKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVL 154 (203)
T ss_pred EEEEecccccchhhee----eeeeee-c-----cccCcccccchhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEE
Confidence 3445556778888886 554111 1 00001112456678999999999998888777766655555677777
Q ss_pred EEcCCC
Q 046867 348 IVGAEG 353 (588)
Q Consensus 348 I~GP~g 353 (588)
|.--.+
T Consensus 155 iyTdkD 160 (203)
T KOG3285|consen 155 IYTDKD 160 (203)
T ss_pred EEeCCC
Confidence 765554
No 42
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=20.51 E-value=60 Score=37.72 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=37.7
Q ss_pred CcCCceEEEEEECCCCCCC---CCCcccccCCCcccCCCcCCCCceeeecccccCCC
Q 046867 355 PYHDGLFFFDVFFPSDYPN---VPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGD 408 (588)
Q Consensus 355 PYeGG~F~fdI~FP~dYP~---~PPkV~F~T~~~IfHPNVy~~GkVCLSlL~tW~G~ 408 (588)
||.=|.|-+ +.+|++||+ +-|-+.|.|++++-+=+-- --.||.-|-..|+|.
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~TpTllaGDrsl-~~vIaHEIAHSWtGN 303 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPTLLAGDRSL-VDVIAHEIAHSWTGN 303 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecchhhcCCcch-hhHHHHHhhhhhccc
Confidence 788888886 557999997 7899999998543332211 124788888889885
Done!