Query 046867
Match_columns 588
No_of_seqs 343 out of 1702
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ceg_A Baculoviral IAP repeat- 100.0 9.7E-50 3.3E-54 411.8 23.1 260 283-550 38-314 (323)
2 2ucz_A UBC7, ubiquitin conjuga 100.0 3E-37 1E-41 290.3 16.6 153 311-493 3-162 (165)
3 1yh2_A HSPC150 protein similar 100.0 4.9E-37 1.7E-41 290.5 17.8 165 310-487 2-166 (169)
4 3h8k_A Ubiquitin-conjugating e 100.0 1.2E-36 4.2E-41 285.6 18.7 153 311-493 2-161 (164)
5 2ayv_A Ubiquitin-conjugating e 100.0 4.2E-37 1.4E-41 290.9 15.6 126 307-444 16-141 (166)
6 1zdn_A Ubiquitin-conjugating e 100.0 3E-37 1E-41 288.9 14.5 128 305-444 6-133 (158)
7 3rz3_A Ubiquitin-conjugating e 100.0 1E-36 3.5E-41 291.8 18.1 160 308-497 3-175 (183)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 6.4E-37 2.2E-41 290.3 15.9 148 311-495 3-150 (169)
9 2c4o_A Ubiquitin-conjugating e 100.0 8.6E-37 2.9E-41 288.3 16.5 128 306-445 13-140 (165)
10 4gpr_A Ubiquitin-conjugating e 100.0 8.8E-37 3E-41 283.6 16.0 123 310-444 2-124 (151)
11 1z2u_A Ubiquitin-conjugating e 100.0 7.5E-37 2.6E-41 283.5 14.7 124 310-445 2-125 (150)
12 2e2c_A Ubiquitin conjugating e 100.0 1.7E-36 5.9E-41 283.0 16.8 147 310-494 7-153 (156)
13 2pwq_A Ubiquitin conjugating e 100.0 5.4E-37 1.9E-41 301.5 12.9 181 308-505 19-204 (216)
14 2r0j_A Ubiquitin carrier prote 100.0 1.4E-36 4.8E-41 281.7 14.6 120 314-445 3-122 (149)
15 2aak_A UBC1, ubiquitin conjuga 100.0 1.9E-36 6.4E-41 281.4 14.8 123 311-445 3-125 (152)
16 2c2v_B Ubiquitin-conjugating e 100.0 3.1E-36 1.1E-40 281.0 15.2 140 312-465 5-144 (154)
17 1fxt_A Ubiquitin-conjugating e 100.0 1.8E-36 6.2E-41 280.7 13.5 144 313-493 2-147 (149)
18 2awf_A Ubiquitin-conjugating e 100.0 2.5E-36 8.5E-41 286.8 14.6 131 309-444 14-151 (172)
19 3fn1_B NEDD8-conjugating enzym 100.0 3.4E-36 1.2E-40 283.6 15.0 132 306-444 8-141 (167)
20 3rcz_B SUMO-conjugating enzyme 100.0 3.3E-36 1.1E-40 283.9 14.4 126 309-444 7-137 (163)
21 1jat_A Ubiquitin-conjugating e 100.0 7.6E-36 2.6E-40 278.4 14.8 142 312-467 5-146 (155)
22 1i7k_A Ubiquitin-conjugating e 100.0 7.7E-36 2.6E-40 285.7 14.4 146 309-492 27-172 (179)
23 3k9o_A Ubiquitin-conjugating e 100.0 1.4E-35 4.8E-40 287.4 16.3 122 311-444 4-129 (201)
24 3bzh_A Ubiquitin-conjugating e 100.0 1.5E-35 5E-40 286.9 16.0 122 311-444 47-168 (194)
25 2gjd_A Ubiquitin-conjugating e 100.0 1.2E-35 4.2E-40 277.7 14.4 125 311-445 3-132 (157)
26 1tte_A Ubiquitin-conjugating e 100.0 7.4E-37 2.5E-41 300.4 5.8 186 313-562 3-190 (215)
27 2bep_A Ubiquitin-conjugating e 100.0 2.3E-35 7.9E-40 276.2 15.6 123 310-444 6-132 (159)
28 1yrv_A Ubiquitin-conjugating l 100.0 1.3E-35 4.6E-40 281.5 14.0 125 310-444 21-146 (169)
29 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.4E-35 4.7E-40 287.0 13.8 123 310-444 30-166 (193)
30 2grr_A Ubiquitin-conjugating e 100.0 3.2E-35 1.1E-39 275.9 14.4 125 310-444 5-134 (161)
31 1wzv_A Ubiquitin-conjugating e 100.0 3E-35 1E-39 274.1 13.5 122 312-445 4-126 (155)
32 1y8x_A Ubiquitin-conjugating e 100.0 1.7E-34 5.9E-39 271.1 15.0 138 311-488 5-143 (160)
33 2h2y_A Ubiquitin-conjugating e 100.0 4.2E-34 1.4E-38 262.1 15.7 115 311-435 19-134 (136)
34 2y9m_A Ubiquitin-conjugating e 100.0 6.2E-34 2.1E-38 270.2 16.7 147 310-492 4-165 (172)
35 2fo3_A Ubiquitin-conjugating e 100.0 2.4E-34 8.3E-39 259.8 13.2 115 312-436 6-121 (125)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 1.4E-34 4.6E-39 269.5 11.8 147 313-496 3-150 (154)
37 3e46_A Ubiquitin-conjugating e 100.0 8.1E-34 2.8E-38 284.9 17.3 147 309-469 54-204 (253)
38 2nvu_C NEDD8-conjugating enzym 100.0 4.2E-34 1.4E-38 273.7 14.4 122 308-444 22-144 (180)
39 2onu_A Ubiquitin-conjugating e 100.0 1.8E-34 6.1E-39 269.0 7.3 117 313-444 3-121 (152)
40 2z5d_A Ubiquitin-conjugating e 100.0 9.5E-34 3.3E-38 271.4 9.6 118 311-444 24-143 (179)
41 3o2u_A NEDD8-conjugating enzym 100.0 5.2E-33 1.8E-37 268.1 14.8 151 307-512 24-181 (190)
42 2a7l_A Hypothetical ubiquitin- 100.0 5E-33 1.7E-37 255.6 11.2 108 314-431 24-135 (136)
43 2a4d_A Ubiquitin-conjugating e 100.0 2.1E-32 7.3E-37 257.9 14.5 128 308-445 21-154 (160)
44 1yf9_A Ubiquitin carrier prote 100.0 7.1E-33 2.4E-37 263.2 11.3 140 312-469 12-153 (171)
45 2q0v_A Ubiquitin-conjugating e 100.0 2.4E-32 8E-37 256.3 14.2 129 305-446 14-149 (156)
46 4ddg_A Ubiquitin-conjugating e 100.0 1E-31 3.5E-36 284.0 20.2 167 311-496 2-168 (399)
47 2hlw_A Ubiquitin-conjugating e 100.0 2.8E-32 9.6E-37 259.2 12.4 146 290-445 12-164 (170)
48 2f4w_A Ubiquitin-conjugating e 100.0 1.7E-31 6E-36 256.9 16.1 120 308-436 10-129 (187)
49 1jat_B Ubiquitin-conjugating e 100.0 4.8E-32 1.6E-36 248.6 10.8 122 311-445 5-133 (138)
50 4ds2_A Ubiquitin-conjugating e 100.0 1.6E-31 5.4E-36 252.2 10.7 120 312-443 8-144 (167)
51 1zuo_A Hypothetical protein LO 100.0 3.2E-31 1.1E-35 255.0 8.0 145 307-472 22-182 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.6E-22 5.5E-27 191.7 3.8 102 310-424 30-143 (172)
53 3r3q_A Suppressor protein STP2 99.6 1.4E-15 4.7E-20 144.0 9.3 114 315-436 31-159 (162)
54 3kpa_A Probable ubiquitin fold 99.5 1.1E-14 3.7E-19 136.1 5.1 86 310-402 32-127 (168)
55 3obq_A Tumor susceptibility ge 99.1 2.6E-11 9.1E-16 113.0 5.7 108 317-437 25-142 (146)
56 2ebm_A RWD domain-containing p 91.4 0.54 1.8E-05 41.3 7.6 68 313-382 11-78 (128)
57 2day_A Ring finger protein 25; 88.1 1.5 5.2E-05 38.4 7.9 68 316-383 12-83 (128)
58 1ukx_A GCN2, GCN2 EIF2alpha ki 86.0 2.7 9.4E-05 37.1 8.4 71 310-382 8-86 (137)
59 2yz0_A Serine/threonine-protei 85.4 3.2 0.00011 36.9 8.5 70 312-383 10-86 (138)
60 3zqs_A E3 ubiquitin-protein li 80.6 5 0.00017 38.7 8.2 85 315-433 4-88 (186)
61 2ebk_A RWD domain-containing p 71.9 7.6 0.00026 34.0 6.4 66 316-382 11-79 (128)
62 2daw_A RWD domain containing p 63.1 9.8 0.00033 34.8 5.4 68 310-382 12-98 (154)
63 2dax_A Protein C21ORF6; RWD do 54.9 6 0.0002 35.9 2.5 24 360-383 74-97 (152)
No 1
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=9.7e-50 Score=411.84 Aligned_cols=260 Identities=38% Similarity=0.697 Sum_probs=223.2
Q ss_pred ccccccccccCCCc--------cchhccccC-CCCCChHHHHHHHHHHHHHHhCCCC----CeEEEecCCCCceEEEEEE
Q 046867 283 KLFKQFDAVEDHSD--------HYYASNVSS-LEQPSNKLVKRIQEEWKILENDLPD----TIFVRVYESRMDLLRAVIV 349 (588)
Q Consensus 283 ~~fk~fd~v~~~sd--------H~f~~~~ss-~~~~s~~a~KRL~kELk~L~k~~P~----gI~V~p~ednl~~w~avI~ 349 (588)
-+|.+||+|.+.+| |||...... ....+..+.+||++|++.|++++|. ++++.+.++|++.|+++|.
T Consensus 38 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~ 117 (323)
T 3ceg_A 38 LQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLIT 117 (323)
T ss_dssp TSEEEECCEEECTTSCEEESSCCTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEE
T ss_pred hcCceeeecccccccccccccchHHHhhhhccCCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEe
Confidence 45999999997665 677653222 2356789999999999999999887 4667889999999999999
Q ss_pred cCCCCCcCCceEEEEEECCCCCCCCCCcccccCCC---cccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHH
Q 046867 350 GAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVS 426 (588)
Q Consensus 350 GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~---~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlS 426 (588)
||+||||+||+|+|+|.||++||++||+|+|.|++ .|||||||.+|+|||++|++|.|...+.|+|+++||.+||++
T Consensus 118 GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLls 197 (323)
T 3ceg_A 118 GPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVS 197 (323)
T ss_dssp BCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHH
T ss_pred CCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHH
Confidence 99999999999999999999999999999999973 499999999999999999999998889999996589999999
Q ss_pred HHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHH-HHHHhhcCCCcchHHHHHHHHHhcHHHHHHHHHHHh
Q 046867 427 IQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYM 505 (588)
Q Consensus 427 IQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~k-tm~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~~k~~~ 505 (588)
||+||.+++|+++||+++..+++..+..+...|++.++..+++ +|.++|++||..|+++|+.||+.++..|+++|++|+
T Consensus 198 IqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~~~~~w~ 277 (323)
T 3ceg_A 198 VQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI 277 (323)
T ss_dssp HHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999998999999999988877888999999999999999998 789999999999999999999999999999999999
Q ss_pred ccCcccccccCCcccccCCCCCCCHHHHHHHHHhHHHHHHHHHhc
Q 046867 506 DGAEVGSLVKGGVQKIHKGKKSCSPDFKASIAGHCDLLIKEFTYI 550 (588)
Q Consensus 506 ~ga~vg~~~~~~~~~~~~~~~~~s~~Fk~~l~~~~~~Lv~~F~~~ 550 (588)
++++.... +............+|...+..|.++|.++
T Consensus 278 ~e~~~~~~--------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~ 314 (323)
T 3ceg_A 278 ADIQQYSS--------DKRVGRTMSHHAAALKRHTAQLREELLKL 314 (323)
T ss_dssp HHHTTC--------------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhhhhhcc--------ccccchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 97542210 11111122344567888888999998876
No 2
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3e-37 Score=290.29 Aligned_cols=153 Identities=26% Similarity=0.468 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecC-CCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~e-dnl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
..+.+||++|+++|+++++.||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 80 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS--ILHP 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CSCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC--CccC
Confidence 4688999999999999999999999864 799999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCC------CCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHH
Q 046867 390 NLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERA 463 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~------~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v 463 (588)
|||.+|+|||++|++|.++ +.+.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~------------------- 138 (165)
T 2ucz_A 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQ-SVEKILLSVMSMLSEPNI--ESGANI------------------- 138 (165)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTC-CHHHHHHHHHHHHHSCCG--GGCCCH-------------------
T ss_pred CCCCCCcEeehhhCCccccccccCCCCCCCCCcC-cHHHHHHHHHHHHhCCCC--CCchhH-------------------
Confidence 9999999999999876432 358999995 999999999999999998 888543
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHhc
Q 046867 464 FILSLKTMLYTVRRPPKHFNDFVSGHFYQR 493 (588)
Q Consensus 464 ~~~s~ktm~~~Lr~pPk~Fed~V~~HF~~~ 493 (588)
.++.++++.++.|++.|+++.++.
T Consensus 139 ------~aa~~~~~~~~~y~~~v~~~~~~~ 162 (165)
T 2ucz_A 139 ------DACILWRDNRPEFERQVKLSILKS 162 (165)
T ss_dssp ------HHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHCHHHHHHHHHHHHHHH
Confidence 234455666677777666665543
No 3
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-37 Score=290.52 Aligned_cols=165 Identities=27% Similarity=0.487 Sum_probs=135.3
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
+..+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP--IYHP 79 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC--Cccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHH
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK 469 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~k 469 (588)
|||.+|+|||++|++|. .+.|+|++ +|.+||++||+||.+||| ++|.+..++ .....+...|++.++..+.+
T Consensus 80 Nv~~~G~iCl~iL~~~~---~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~~aa--~~~~~~~~~y~~~~r~~~~~ 151 (169)
T 1yh2_A 80 NIDSAGRICLDVLKLPP---KGAWRPSL-NIATVLTSIQLLMSEPNP--DDPLMADIS--SEFKYNKPAFLKNARQWTEK 151 (169)
T ss_dssp TBCTTCBBCCGGGSCTT---TSCCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCHHHH--HHHHHCHHHHHHHHHHHHHH
T ss_pred cCCcCCeEecccccCCc---ccCCCCCC-cHHHHHHHHHHHHhCCCC--cchHhHHHH--HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998652 36899995 999999999999999999 999765543 34555666777776665543
Q ss_pred HHHHhhcCCCcchHHHHH
Q 046867 470 TMLYTVRRPPKHFNDFVS 487 (588)
Q Consensus 470 tm~~~Lr~pPk~Fed~V~ 487 (588)
++..++...++++|+
T Consensus 152 ---~a~~~~~~~~~~~~~ 166 (169)
T 1yh2_A 152 ---HARQKQKADEEEMLD 166 (169)
T ss_dssp ---HSCCC----------
T ss_pred ---HccccccCCHHHHhh
Confidence 334455556666553
No 4
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.2e-36 Score=285.59 Aligned_cols=153 Identities=24% Similarity=0.436 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCC-CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ed-nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
..+.+||++|+++|+++++.||++.+.++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE--MFHP 79 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCCT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC--CccC
Confidence 35789999999999999999999998765 99999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCC------CCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHH
Q 046867 390 NLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERA 463 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~------~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v 463 (588)
|||.+|+|||++|++|.++ +.+.|+|++ ||.+||++||+||.+||| ++|....
T Consensus 80 NV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-ti~~vL~~i~~ll~~pn~--~~p~n~~------------------ 138 (164)
T 3h8k_A 80 NIYPDGRVCISILHAPGDDPMGYESSAERWSPVQ-SVEKILLSVVSMLAEPND--ESGANVD------------------ 138 (164)
T ss_dssp TBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSHH------------------
T ss_pred CCCCCCcEeeecccCcccccccccccccCCCCCC-cHHHHHHHHHHHHcCCCC--CCccCHH------------------
Confidence 9999999999999987532 358999995 999999999999999999 8995432
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHhc
Q 046867 464 FILSLKTMLYTVRRPPKHFNDFVSGHFYQR 493 (588)
Q Consensus 464 ~~~s~ktm~~~Lr~pPk~Fed~V~~HF~~~ 493 (588)
++.+++++++.|++.|+++.++.
T Consensus 139 -------aa~~~~~~~~~f~~~~~~~~~~s 161 (164)
T 3h8k_A 139 -------ASKMWRDDREQFYKIAKQIVQKS 161 (164)
T ss_dssp -------HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHCHHHHHHHHHHHHHHh
Confidence 33445555666666666655543
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-37 Score=290.86 Aligned_cols=126 Identities=33% Similarity=0.657 Sum_probs=117.8
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc
Q 046867 307 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR 386 (588)
Q Consensus 307 ~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I 386 (588)
......+.+||++|+++|+++++.||.+.+.++|+..|+++|.||+||||+||+|.|+|.||++||++||+|+|.|+ |
T Consensus 16 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i 93 (166)
T 2ayv_A 16 NLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK--I 93 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred cccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC--C
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 387 LNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 387 fHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
||||||.+|+|||++|+ +.|+|+. +|.+||++||+||.+||| ++|...
T Consensus 94 ~HPNI~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pn~--~~Pln~ 141 (166)
T 2ayv_A 94 YHPNINSQGAICLDILK-------DQWSPAL-TISKVLLSISSLLTDPNP--DDPLVP 141 (166)
T ss_dssp CBTTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred cCCcCCCCCeEEccccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CchhhH
Confidence 99999999999999998 7999995 999999999999999999 899654
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3e-37 Score=288.92 Aligned_cols=128 Identities=28% Similarity=0.558 Sum_probs=120.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCC
Q 046867 305 SLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG 384 (588)
Q Consensus 305 s~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 384 (588)
+....+..+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~- 84 (158)
T 1zdn_A 6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK- 84 (158)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccC-
Confidence 3446678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 385 LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 385 ~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|||||||.+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 85 -i~HPnv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~p~n~ 133 (158)
T 1zdn_A 85 -IFHPNVGANGEICVNVLK-------RDWTAEL-GIRHVLLTIKCLLIHPNP--ESALNE 133 (158)
T ss_dssp -CCCTTBCTTSBBCHHHHT-------TTCCTTC-CHHHHHHHHHHHHHSCCG--GGCSSH
T ss_pred -cccCCCCCCCEEehhhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH
Confidence 999999999999999998 7999995 999999999999999999 888643
No 7
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1e-36 Score=291.85 Aligned_cols=160 Identities=25% Similarity=0.412 Sum_probs=132.8
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc
Q 046867 308 QPSNKLVKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR 386 (588)
Q Consensus 308 ~~s~~a~KRL~kELk~L~k~~P~gI~V~-p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I 386 (588)
+++..+.|||++||++|+++++.||++. ++++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 80 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--M 80 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC--C
Confidence 4456789999999999999999999999 788899999999999999999999999999999999999999999999 9
Q ss_pred cCCCcCCCCceeeecccccCCC------CCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhh
Q 046867 387 LNPNLYNCGKVCLSLLNTWDGD------KNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYN 460 (588)
Q Consensus 387 fHPNVy~~GkVCLSlL~tW~G~------~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YN 460 (588)
||||||.+|+|||++|++|.++ ..+.|+|++ +|.+||++||+||.+||| ++|+...+
T Consensus 81 ~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~~a-------------- 143 (183)
T 3rz3_A 81 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQ-NVRTILLSVISLLNEPNT--FSPANVDA-------------- 143 (183)
T ss_dssp CCTTBCTTSBBCCTTC--------------CCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSHHH--------------
T ss_pred ccCCCCCCCcEehhhcCcccccccccccccCCCCCcC-cHHHHHHHHHHHHhCCCC--CCcccHHH--------------
Confidence 9999999999999999875332 248999996 999999999999999999 89954321
Q ss_pred HHHHHHHHHHHHHhhcC------CCcchHHHHHHHHHhcHHHH
Q 046867 461 ERAFILSLKTMLYTVRR------PPKHFNDFVSGHFYQRAHDI 497 (588)
Q Consensus 461 e~v~~~s~ktm~~~Lr~------pPk~Fed~V~~HF~~~a~~I 497 (588)
+.++++ ..+.|+..|++++++.+..+
T Consensus 144 -----------a~~~~~~~~~~~~~~~y~~~v~~~v~~s~~~~ 175 (183)
T 3rz3_A 144 -----------SVMYRKWKESKGKDREYTDIIRKQVLGTKVDA 175 (183)
T ss_dssp -----------HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 122322 56788888887777766654
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=6.4e-37 Score=290.35 Aligned_cols=148 Identities=26% Similarity=0.523 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
..+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~--i~HPN 80 (169)
T 1ayz_A 3 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE--MFHPN 80 (169)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC--CccCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHH
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKT 470 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~kt 470 (588)
||.+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|++..
T Consensus 81 I~~~G~ICl~iL~-------~~WsP~~-~i~~vL~si~~ll~~Pn~--~~P~n~~------------------------- 125 (169)
T 1ayz_A 81 VYANGEICLDILQ-------NRWTPTY-DVASILTSIQSLFNDPNP--ASPANVE------------------------- 125 (169)
T ss_dssp BCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHTCCCC--SSCSSHH-------------------------
T ss_pred CCCCCeEeehhhc-------cCCCCcC-cHHHHHHHHHHHHhCCCC--CcHHHHH-------------------------
Confidence 9999999999998 7899996 999999999999999998 9996543
Q ss_pred HHHhhcCCCcchHHHHHHHHHhcHH
Q 046867 471 MLYTVRRPPKHFNDFVSGHFYQRAH 495 (588)
Q Consensus 471 m~~~Lr~pPk~Fed~V~~HF~~~a~ 495 (588)
++.++++.++.|++.|+++.++.|.
T Consensus 126 aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 126 AATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 2334455566777766666655544
No 9
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=8.6e-37 Score=288.27 Aligned_cols=128 Identities=32% Similarity=0.638 Sum_probs=119.4
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCc
Q 046867 306 LEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGL 385 (588)
Q Consensus 306 ~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 385 (588)
.......+.+||++|+++|+++++.||++.+.++|+..|+++|.||+||||+||+|.|+|.||++||++||+|+|.|+
T Consensus 13 ~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~-- 90 (165)
T 2c4o_A 13 LVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-- 90 (165)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--
T ss_pred cccCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC--
Confidence 345667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 386 RLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 386 IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
|||||||.+|+|||++|+ +.|+|+. +|.+||++||+||.+||| ++|....
T Consensus 91 i~HPnV~~~G~ICl~iL~-------~~W~P~~-ti~~vL~si~~ll~~pn~--~~P~n~~ 140 (165)
T 2c4o_A 91 IYHPNINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVPE 140 (165)
T ss_dssp CCBTTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSHH
T ss_pred CcCCcCCCCCeEeehhhc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CccccHH
Confidence 999999999999999998 7999995 999999999999999999 9996543
No 10
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=8.8e-37 Score=283.61 Aligned_cols=123 Identities=33% Similarity=0.648 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
+..+.+||++|+++|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 79 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK--VYHP 79 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC--cccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
||+.+|+|||++|. +.|+|+. +|.+||++|++||.+||| ++|...
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 124 (151)
T 4gpr_A 80 NINKNGVICLDILK-------DQWSPAL-TLSRVLLSISSLLTDPNP--SDPLDP 124 (151)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHCCCT--TSCSSH
T ss_pred eECCCCEEEccccc-------CCCCCCC-cHHHHHHHHHHHhcCCCC--CCchhH
Confidence 99999999999997 7999995 999999999999999999 899653
No 11
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=7.5e-37 Score=283.54 Aligned_cols=124 Identities=33% Similarity=0.655 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
+..+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHP 79 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC--cccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
|||.+|+|||++|+ +.|+|+. +|.+||++||+||.+||| ++|....
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n~~ 125 (150)
T 1z2u_A 80 NINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVPE 125 (150)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred cCCCCCeEeecccc-------CCCCCCC-CHHHHHHHHHHHhhCCCC--CCccCHH
Confidence 99999999999998 7999995 999999999999999999 9996543
No 12
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-36 Score=283.00 Aligned_cols=147 Identities=22% Similarity=0.358 Sum_probs=131.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
+..+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 84 (156)
T 2e2c_A 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP--CWHP 84 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--cccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHH
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK 469 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~k 469 (588)
|||.+|+|||++|+ +.|+|+. +|.+||++||+||.+||| ++|+...
T Consensus 85 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~pn~--~~p~n~~------------------------ 130 (156)
T 2e2c_A 85 NVDQSGNICLDILK-------ENWTASY-DVRTILLSLQSLLGEPNN--ASPLNAQ------------------------ 130 (156)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHTTSCCC--SSCSCHH------------------------
T ss_pred CCccCceEECcccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCHHHHH------------------------
Confidence 99999999999998 7999995 999999999999999999 9996543
Q ss_pred HHHHhhcCCCcchHHHHHHHHHhcH
Q 046867 470 TMLYTVRRPPKHFNDFVSGHFYQRA 494 (588)
Q Consensus 470 tm~~~Lr~pPk~Fed~V~~HF~~~a 494 (588)
++.++ +.++.|++.|+++.++.+
T Consensus 131 -aa~~~-~d~~~y~~~~~~~~~~~~ 153 (156)
T 2e2c_A 131 -AADMW-SNQTEYKKVLHEKYKTAQ 153 (156)
T ss_dssp -HHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred -HHHHh-cCHHHHHHHHHHHHHHhc
Confidence 23344 566777776666665544
No 13
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=5.4e-37 Score=301.52 Aligned_cols=181 Identities=24% Similarity=0.414 Sum_probs=133.0
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCccc
Q 046867 308 QPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRL 387 (588)
Q Consensus 308 ~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~If 387 (588)
.....+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i~ 96 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK--IW 96 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCC--Cc
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHH
Q 046867 388 NPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFIL 466 (588)
Q Consensus 388 HPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~ 466 (588)
||||| .+|+|||++|+ +.|+|++ ||.+||++||+||.+||| ++|....++ .....+...|++.++..
T Consensus 97 HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~dPln~eaa--~~~~~d~~~f~~~ar~~ 164 (216)
T 2pwq_A 97 HPNISSQTGAICLDVLK-------NEWSPAL-TIRTALLSIQALLSDPQP--DDPQDAEVA--KMYKENHALFVKTASVW 164 (216)
T ss_dssp BTTBCTTTCBBCCHHHH-------HHCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHHHH--HHHHHCHHHHHHHHHHH
T ss_pred CCCCcCCCCEEEchhhc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccHHHH--HHHHHCHHHHHHHHHHH
Confidence 99999 69999999998 6899995 999999999999999999 999765443 34556666777766655
Q ss_pred HHHHHHHhhcCC----CcchHHHHHHHHHhcHHHHHHHHHHHh
Q 046867 467 SLKTMLYTVRRP----PKHFNDFVSGHFYQRAHDILAACKAYM 505 (588)
Q Consensus 467 s~ktm~~~Lr~p----Pk~Fed~V~~HF~~~a~~Il~~~k~~~ 505 (588)
+.+- +.... .+..++++.-+|.+.+....-.|..|-
T Consensus 165 t~~y---a~~~~~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~ 204 (216)
T 2pwq_A 165 TKTF---ATGPKEEPREVIIKKITEMGFSEDQAKNALIKANWN 204 (216)
T ss_dssp HHHH---SCCC--------------------------------
T ss_pred HHHh---cCCCcccchhhHHHHHHHcCCCHHHHHHHHHHcCCc
Confidence 5432 22211 123344444556655555555555554
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.4e-36 Score=281.70 Aligned_cols=120 Identities=33% Similarity=0.668 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcCC
Q 046867 314 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYN 393 (588)
Q Consensus 314 ~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~ 393 (588)
.+||++|+++|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||||.
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv~~ 80 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--IYHPNIDK 80 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC--CCBTTBCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC--CccCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 394 CGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 394 ~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|....
T Consensus 81 ~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 122 (149)
T 2r0j_A 81 LGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSSPEP--DDPLDSK 122 (149)
T ss_dssp TCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSSCH
T ss_pred CCEEechhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCchhHH
Confidence 9999999998 7999995 999999999999999999 9997653
No 15
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.9e-36 Score=281.44 Aligned_cols=123 Identities=34% Similarity=0.660 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
..+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 3 ~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPn 80 (152)
T 2aak_A 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR--MFHPN 80 (152)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC--cccCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
||.+|+|||++|. +.|+|+. +|.+||++||+||.+||| ++|++..
T Consensus 81 v~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 125 (152)
T 2aak_A 81 IYADGSICLDILQ-------NQWSPIY-DVAAILTSIQSLLCDPNP--NSPANSE 125 (152)
T ss_dssp BCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHTSCCT--TSCSSHH
T ss_pred CCCCCEEechhhc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CccccHH
Confidence 9999999999998 7899995 999999999999999999 9997643
No 16
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-36 Score=281.00 Aligned_cols=140 Identities=29% Similarity=0.529 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 312 KLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
.+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 82 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--IYHPNV 82 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC--cccCcC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHH
Q 046867 392 YNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFI 465 (588)
Q Consensus 392 y~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~ 465 (588)
|.+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|....++ .....+...|++.++.
T Consensus 83 ~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n~~aa--~~~~~d~~~f~~~ar~ 144 (154)
T 2c2v_B 83 DKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPNP--DDPLANDVA--EQWKTNEAQAIETARA 144 (154)
T ss_dssp CTTCBBCCHHHH-------TSCCTTC-CHHHHHHHHHHHTTSCCC--CCC--CHHH--HHHHHHHHHHHHHHHH
T ss_pred ccCCeEEchhcc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccHHHH--HHHHHCHHHHHHHHHH
Confidence 999999999998 7999985 999999999999999999 899654322 2333334444444433
No 17
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.8e-36 Score=280.66 Aligned_cols=144 Identities=28% Similarity=0.535 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCC-CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ed-nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
+.+||++|++.|+++++.||++.+.++ |+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPni 79 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK--VYHPNI 79 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC--CCBTTB
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--CccCCC
Confidence 468999999999999999999999887 99999999999999999999999999999999999999999999 999999
Q ss_pred CC-CCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHH
Q 046867 392 YN-CGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKT 470 (588)
Q Consensus 392 y~-~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~kt 470 (588)
|. +|+|||++|+ +.|+|+. +|.+||++||+||.+||| ++|... .
T Consensus 80 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~-------------------------~ 124 (149)
T 1fxt_A 80 SSVTGAICLDILK-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDA-------------------------E 124 (149)
T ss_dssp CSSSCCBCCHHHH-------TSCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSH-------------------------H
T ss_pred cCCCCeEeCCcCC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH-------------------------H
Confidence 97 9999999998 7999995 999999999999999999 899643 2
Q ss_pred HHHhhcCCCcchHHHHHHHHHhc
Q 046867 471 MLYTVRRPPKHFNDFVSGHFYQR 493 (588)
Q Consensus 471 m~~~Lr~pPk~Fed~V~~HF~~~ 493 (588)
++.++++.++.|+..++++.++.
T Consensus 125 aa~~~~~d~~~f~~~a~~~~~~~ 147 (149)
T 1fxt_A 125 VAQHYLRDRESFNKTAALWTRLY 147 (149)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHh
Confidence 34456667778888776665543
No 18
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.5e-36 Score=286.84 Aligned_cols=131 Identities=21% Similarity=0.437 Sum_probs=113.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEEecC-CCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCccc
Q 046867 309 PSNKLVKRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRL 387 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~~P~gI~V~p~e-dnl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~If 387 (588)
.+..+.+||+||+++|+++++.||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~--i~ 91 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--IW 91 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CC
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC--Cc
Confidence 456788999999999999999999999865 799999999999999999999999999999999999999999999 99
Q ss_pred CCCcCCCCceeeecccccCC------CCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 388 NPNLYNCGKVCLSLLNTWDG------DKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 388 HPNVy~~GkVCLSlL~tW~G------~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|||||.+|+|||++|++|.+ ...+.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~p~n~ 151 (172)
T 2awf_A 92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLADPNG--DSPANV 151 (172)
T ss_dssp CTTBCTTCBBCCGGGSCC---------CTTSCCTTC-CHHHHHHHHHHHHSCC----------
T ss_pred cCCCCCCCcEehhhcCCcccccccccccCCCCCCcC-cHHHHHHHHHHHHHCcCC--CCccCH
Confidence 99999999999999987532 2357999995 999999999999999888 888543
No 19
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=3.4e-36 Score=283.60 Aligned_cols=132 Identities=24% Similarity=0.385 Sum_probs=120.9
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCCeEEEe-cCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCC
Q 046867 306 LEQPSNKLVKRIQEEWKILENDLPDTIFVRV-YESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG 384 (588)
Q Consensus 306 ~~~~s~~a~KRL~kELk~L~k~~P~gI~V~p-~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 384 (588)
.......+.+||++||++|+++++.||++.+ .++++..|.++| ||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~- 85 (167)
T 3fn1_B 8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK- 85 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSC-
T ss_pred CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCC-
Confidence 4456788999999999999999999999985 567899999988 9999999999999999999999999999999999
Q ss_pred cccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcc-cCCCCCCCCcc
Q 046867 385 LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN-ERPYFNEPGWE 444 (588)
Q Consensus 385 ~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~-PnPyfnEPg~~ 444 (588)
|||||||.+|+|||++|++| |...+.|+|+. +|.+||++||+||.+ ||| ++|...
T Consensus 86 -i~HPnv~~~G~iCl~iL~~~-~~~~~~W~p~~-~i~~vl~~i~~ll~~~pn~--~~p~n~ 141 (167)
T 3fn1_B 86 -IWHPNITETGEICLSLLREH-SIDGTGWAPTR-TLKDVVWGLNSLFTDLLNF--DDPLNI 141 (167)
T ss_dssp -CCCSSBCTTCCBCCGGGSBC-SSSTTSBCTTC-CHHHHHHHHHHTTTTTCCS--SSCSCH
T ss_pred -cccCCCCCCCEEechhhccC-CCCCCCCCCcC-cHHHHHHHHHHHHcCCCCC--CcchhH
Confidence 99999999999999999987 55568999995 999999999999999 698 899653
No 20
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-36 Score=283.95 Aligned_cols=126 Identities=32% Similarity=0.579 Sum_probs=116.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEEecCC-----CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCC
Q 046867 309 PSNKLVKRIQEEWKILENDLPDTIFVRVYES-----RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~~P~gI~V~p~ed-----nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
.+..+.+||+||+++|++++|.||++.+.++ |+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4677899999999999999999999999866 89999999999999999999999999999999999999999999
Q ss_pred CcccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 384 GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 384 ~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|||||||.+|+|||++|+. .++|+|++ +|.+||++||+||.+||| ++|...
T Consensus 87 --i~HPnV~~~G~iCl~iL~~-----~~~W~p~~-ti~~vL~~i~~ll~~P~~--~~p~n~ 137 (163)
T 3rcz_B 87 --LFHPNVYPSGTVCLSILNE-----EEGWKPAI-TIKQILLGIQDLLDDPNI--ASPAQT 137 (163)
T ss_dssp --CCSTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCH
T ss_pred --CccCCCCCCCcEeccccCC-----CCCcCCcC-cHHHHHHHHHHHHhCCCC--CCccCH
Confidence 9999999999999999982 25799995 999999999999999998 899654
No 21
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=7.6e-36 Score=278.40 Aligned_cols=142 Identities=30% Similarity=0.549 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 312 KLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
.+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 82 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPNI 82 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC--CCBTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc--cccCCC
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHH
Q 046867 392 YNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILS 467 (588)
Q Consensus 392 y~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s 467 (588)
|.+|+|||++|. +.|+|+. +|.+||++||+||.+||| ++|....++ ...+.+...|++.++..+
T Consensus 83 ~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~aa--~~~~~~~~~f~~~~r~~~ 146 (155)
T 1jat_A 83 DRLGRICLDVLK-------TNWSPAL-QIRTVLLSIQALLASPNP--NDPLANDVA--EDWIKNEQGAKAKAREWT 146 (155)
T ss_dssp CTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSTTCCTTH--HHHHHCHHHHHHHHHHHH
T ss_pred CCCCEEEchhhc-------cCCCCCC-CHHHHHHHHHHHHhCCCC--CCcccHHHH--HHHHHCHHHHHHHHHHHH
Confidence 999999999997 7999995 999999999999999999 999776543 234445555555554443
No 22
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-36 Score=285.71 Aligned_cols=146 Identities=25% Similarity=0.357 Sum_probs=129.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccC
Q 046867 309 PSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLN 388 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfH 388 (588)
.+..+.+||++||+.|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~H 104 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP--CYH 104 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC--CCS
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC--Ccc
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHH
Q 046867 389 PNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSL 468 (588)
Q Consensus 389 PNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ 468 (588)
||||.+|+|||++|. +.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 105 PNV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln~------------------------ 150 (179)
T 1i7k_A 105 PNVDTQGNISLDILK-------EKWSALY-DVRTILLSIQSLLGEPNI--DSPLNT------------------------ 150 (179)
T ss_dssp TTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH------------------------
T ss_pred CccccCCeEEcccCc-------CcCCCCC-CHHHHHHHHHHHHhCCCC--cchhhH------------------------
Confidence 999999999999998 7999995 999999999999999999 899543
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHh
Q 046867 469 KTMLYTVRRPPKHFNDFVSGHFYQ 492 (588)
Q Consensus 469 ktm~~~Lr~pPk~Fed~V~~HF~~ 492 (588)
.++.++ +.++.|++.|++++++
T Consensus 151 -~aa~l~-~d~~~f~~~v~~~v~~ 172 (179)
T 1i7k_A 151 -HAAELW-KNPTAFKKYLQETYSK 172 (179)
T ss_dssp -HHHHHT-TSHHHHHHHHHHHHHT
T ss_pred -HHHHHh-hCHHHHHHHHHHHHHH
Confidence 233445 6677777777666554
No 23
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.4e-35 Score=287.35 Aligned_cols=122 Identities=32% Similarity=0.617 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHhC---CCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCccc
Q 046867 311 NKLVKRIQEEWKILEND---LPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRL 387 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~---~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~If 387 (588)
..+.+||++|+++|+++ ++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 4 ~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 81 (201)
T 3k9o_A 4 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--IW 81 (201)
T ss_dssp CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC--cc
Confidence 34689999999999987 37899999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 388 NPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 388 HPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
||||| .+|+|||++|. +.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 82 HPnv~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~p~p--~~p~n~ 129 (201)
T 3k9o_A 82 HPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA 129 (201)
T ss_dssp BTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred cCCCcCCCCeeeCcccc-------cCCCCCC-CHHHHHHHHHHHhcCCCC--CCcccH
Confidence 99999 69999999997 7999995 999999999999999999 999643
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.5e-35 Score=286.94 Aligned_cols=122 Identities=30% Similarity=0.577 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
..+.+||++||+.|+++++.||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HPN 124 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR--IYHCN 124 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC--Cccce
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
||.+|+|||++|. +.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 125 V~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~ 168 (194)
T 3bzh_A 125 INSQGVICLDILK-------DNWSPAL-TISKVLLSICSLLTDCNP--ADPLVG 168 (194)
T ss_dssp BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred ECCCCceechhhh-------ccCCCcC-cHHHHHHHHHHHHhCCCC--ccchhH
Confidence 9999999999998 7999995 999999999999999999 899654
No 25
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.2e-35 Score=277.72 Aligned_cols=125 Identities=33% Similarity=0.671 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCc
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYE-----SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGL 385 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~e-----dnl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 385 (588)
..+.+||++|++.|+++++.||++.+.+ +|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-- 80 (157)
T 2gjd_A 3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG-- 80 (157)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT--
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC--
Confidence 3578999999999999999999999875 489999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 386 RLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 386 IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
|||||||.+|+|||++|+. .+.|+|+. +|.+||++||+||.+||| ++|+...
T Consensus 81 i~HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 132 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNE-----DQDWRPAI-TLKQIVLGVQDLLDSPNP--NSPAQEP 132 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TCCCCHH
T ss_pred CccCCCCCCCcEeeecccC-----CCCCCCCC-cHHHHHHHHHHHHhCCCC--CCccCHH
Confidence 9999999999999999984 14899995 999999999999999888 9996543
No 26
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=7.4e-37 Score=300.40 Aligned_cols=186 Identities=27% Similarity=0.478 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCC-CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ed-nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
+.+||++|++.|++++++||++.+.++ +++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i~HPNI 80 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK--VYHPNI 80 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT--CCCSSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC--CccCcC
Confidence 579999999999999999999998776 46799999999999999999999999999999999999999999 999999
Q ss_pred CC-CCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHH
Q 046867 392 YN-CGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKT 470 (588)
Q Consensus 392 y~-~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~kt 470 (588)
|. +|+|||++|+ +.|+|++ ||.+||++||+||.+||| ++|....
T Consensus 81 ~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~~Pln~e------------------------- 125 (215)
T 1tte_A 81 SSVTGAICLDILR-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDAE------------------------- 125 (215)
T ss_dssp CSSSSCCCSSTTT-------CCSCTTC-CHHHHHHHHHHHHTSCCC--SSCSCHH-------------------------
T ss_pred cCCCCEEECccCC-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCHH-------------------------
Confidence 97 9999999998 7999995 999999999999999999 8996532
Q ss_pred HHHhhcCCCcchHHHHHHHHHhcHHHHHHHHHHHhccCcccccccCCcccccCCCCCCCHHHHHHHHHhHHHHHHHHHhc
Q 046867 471 MLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGGVQKIHKGKKSCSPDFKASIAGHCDLLIKEFTYI 550 (588)
Q Consensus 471 m~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~~k~~~~ga~vg~~~~~~~~~~~~~~~~~s~~Fk~~l~~~~~~Lv~~F~~~ 550 (588)
++.++++.++.|+..|++..++.| .+...+ ..++ .....+.++.+.+|++|+.|
T Consensus 126 aa~~~~~d~~~f~~~ar~~t~~yA-----------~~~~~~--~~~~-------------~~~~~~~g~~~~~v~~~~~m 179 (215)
T 1tte_A 126 VAQHYLRDRESFNKTAALWTRLYA-----------SETSNG--QKGN-------------VEESDLYGIDHDLIDEFESQ 179 (215)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSS-----------CCCSCC--SSCC-------------CSCSSCCCCSHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHhc-----------cCCCcc--cccc-------------hhhhhhccccHHHHHHHHHc
Confidence 334455667777775554333222 110000 0000 01112457778899999999
Q ss_pred Cchhhhhhhccc
Q 046867 551 GVKDCENFLTQA 562 (588)
Q Consensus 551 G~~d~~~~~~~~ 562 (588)
|| +.++++...
T Consensus 180 g~-~~~~~~~al 190 (215)
T 1tte_A 180 GF-EKDKIVEVL 190 (215)
T ss_dssp TC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 99 677666554
No 27
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=2.3e-35 Score=276.18 Aligned_cols=123 Identities=32% Similarity=0.615 Sum_probs=115.6
Q ss_pred ChHHHHHHHHHHHHHHhC---CCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc
Q 046867 310 SNKLVKRIQEEWKILEND---LPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR 386 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~---~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I 386 (588)
+..+.+||++|+++|+++ ++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 6 s~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 83 (159)
T 2bep_A 6 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--I 83 (159)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC--C
Confidence 457889999999999985 57899999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 387 LNPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 387 fHPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|||||| .+|+|||++|+ +.|+|+. +|.+||++||+||.+||| ++|...
T Consensus 84 ~HPni~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 132 (159)
T 2bep_A 84 WHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA 132 (159)
T ss_dssp CBTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred CccCCCCCCCEEeChhhh-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH
Confidence 999999 69999999998 6899995 999999999999999999 899643
No 28
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-35 Score=281.45 Aligned_cols=125 Identities=20% Similarity=0.370 Sum_probs=117.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
+..+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 21 ~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HP 98 (169)
T 1yrv_A 21 HGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI--PFHP 98 (169)
T ss_dssp GCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC--CCCT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC--CccC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred Cc-CCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 390 NL-YNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 390 NV-y~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|| +.+|+|||++|+. .+.|+|++ +|.+||++||+||.+||| ++|+..
T Consensus 99 NI~~~~G~ICL~iL~~-----~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln~ 146 (169)
T 1yrv_A 99 NVDPHTGQPCIDFLDN-----PEKWNTNY-TLSSILLALQVMLSNPVL--ENPVNL 146 (169)
T ss_dssp TBCTTTCCBCCHHHHC-----GGGCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCH
T ss_pred cccCCCCeEeehhhcC-----CcCCCCcC-CHHHHHHHHHHHHhCCCC--CCchhH
Confidence 99 8999999999972 26899995 999999999999999999 999653
No 29
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-35 Score=287.03 Aligned_cols=123 Identities=28% Similarity=0.586 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHHHhCCC-------------CCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCC
Q 046867 310 SNKLVKRIQEEWKILENDLP-------------DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPP 376 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P-------------~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PP 376 (588)
...+.+||++||++|+++++ .||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 34578999999999999987 79999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccCCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 377 NVHYHSGGLRLNPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 377 kV~F~T~~~IfHPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
+|+|.|+ ||||||| .+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 110 ~V~F~T~--i~HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pnp--~~P~n~ 166 (193)
T 2f4z_A 110 KMKFVTK--IWHPNISSQTGAICLDILK-------HEWSPAL-TIRTALLSIQAMLADPVP--TDPQDA 166 (193)
T ss_dssp EEEESSC--CCBTTBCTTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred eEEEecC--CccCCCcCCCCEEECcccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCcccH
Confidence 9999999 9999999 69999999998 6899995 999999999999999999 899653
No 30
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.2e-35 Score=275.92 Aligned_cols=125 Identities=30% Similarity=0.598 Sum_probs=115.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCC
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYE-----SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG 384 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~e-----dnl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 384 (588)
+..+.+||++|+++|+++++.||++.+.+ +|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 5 ~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~- 83 (161)
T 2grr_A 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP- 83 (161)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC-
Confidence 45688999999999999999999998864 589999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 385 LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 385 ~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
|||||||.+|+|||++|+. .+.|+|+. +|.+||++||+||.+||+ ++|+..
T Consensus 84 -i~HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 134 (161)
T 2grr_A 84 -LFHPNVYPSGTVCLSILEE-----DKDWRPAI-TIKQILLGIQELLNEPNI--QSPAQA 134 (161)
T ss_dssp -CCSTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred -cccCCCCCCCeEeehhcCC-----CCCcCCCC-cHHHHHHHHHHHHhCCCC--CCccCH
Confidence 9999999999999999983 25899995 999999999999999888 999654
No 31
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3e-35 Score=274.13 Aligned_cols=122 Identities=24% Similarity=0.477 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEE-EecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 312 KLVKRIQEEWKILENDLPDTIFV-RVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI~V-~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
.+.+||++|+++|+++++.||.+ .++++|+..|+++|. |+||||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPn 80 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK--IYHPN 80 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC--CCBTT
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCC--CccCc
Confidence 36799999999999999999999 788999999999999 999999999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
||.+|+|||++|+ .+.|+|++ +|.+||++||+||.+||| ++|+...
T Consensus 81 V~~~G~iCl~iL~------~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 126 (155)
T 1wzv_A 81 VDENGQICLPIIS------SENWKPCT-KTCQVLEALNVLVNRPNI--REPLRMD 126 (155)
T ss_dssp BCTTCBCCCGGGC------TTTCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSHH
T ss_pred CCCCCeEeecCCC------ccCCCCCC-cHHHHHHHHHHHHhCCCC--CchHHHH
Confidence 9999999999993 17999995 999999999999999999 9996543
No 32
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-34 Score=271.14 Aligned_cols=138 Identities=26% Similarity=0.440 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNP 389 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~-p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHP 389 (588)
..+.+||++|+++| ++++||++. ++++|+..|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--VYHP 79 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC--CCBT
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecC--CccC
Confidence 46789999999999 578999998 7889999999988 9999999999999999999999999999999999 9999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHH
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK 469 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~k 469 (588)
|||.+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|+..
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~Pn~--~~p~n~------------------------- 124 (160)
T 1y8x_A 80 NIDLEGNVCLNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNK------------------------- 124 (160)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH-------------------------
T ss_pred cCCCCCeEEcccch-------hhccCCC-CHHHHHHHHHHHHhCCCC--CCccCH-------------------------
Confidence 99999999999998 7999995 999999999999999999 899643
Q ss_pred HHHHhhcCCCcchHHHHHH
Q 046867 470 TMLYTVRRPPKHFNDFVSG 488 (588)
Q Consensus 470 tm~~~Lr~pPk~Fed~V~~ 488 (588)
.++.++++.++.|++.|++
T Consensus 125 ~aa~~~~~~~~~f~~~v~~ 143 (160)
T 1y8x_A 125 EAAEVLQNNRRLFEQNVQR 143 (160)
T ss_dssp HHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHH
Confidence 3345567777788874433
No 33
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.2e-34 Score=262.07 Aligned_cols=115 Identities=25% Similarity=0.492 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc-cCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR-LNP 389 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I-fHP 389 (588)
..+.+||++|+++|+++++.||++.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ + |||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~~HP 96 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK--PPKHT 96 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS--CCCCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC--CCCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998 6 999
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccC
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNER 435 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~Pn 435 (588)
|||.+|+|||++|+ +.|+|++ +|.+||++||+||.+|+
T Consensus 97 nv~~~G~ICl~iL~-------~~WsP~~-ti~~vL~si~sll~~p~ 134 (136)
T 2h2y_A 97 HVYSNGDICLSVLG-------DDYNPSL-SISGLILSIISMLSSAK 134 (136)
T ss_dssp TBCTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHSSSC
T ss_pred cCCCCCEEECcccc-------CCCCCCC-cHHHHHHHHHHHHhCcC
Confidence 99999999999998 7999995 99999999999998765
No 34
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=6.2e-34 Score=270.23 Aligned_cols=147 Identities=22% Similarity=0.397 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHHHHHHh-C-C------CC---CeEEEe-cCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCc
Q 046867 310 SNKLVKRIQEEWKILEN-D-L------PD---TIFVRV-YESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPN 377 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k-~-~------P~---gI~V~p-~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPk 377 (588)
+..+.+||++||+.|++ + + |. ++.+.+ .++|++.|+++|.||+||||+||+|+|+|.||++||++||+
T Consensus 4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~ 83 (172)
T 2y9m_A 4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK 83 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence 46788999999999998 4 2 43 467777 88999999999999999999999999999999999999999
Q ss_pred ccccC-CCcccCCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHH
Q 046867 378 VHYHS-GGLRLNPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQ 455 (588)
Q Consensus 378 V~F~T-~~~IfHPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~ 455 (588)
|+|.| + ||||||+ .+|+|||++|+. +.|+|++ +|.+||++||+||.+||| ++|...
T Consensus 84 v~f~t~~--i~HPni~~~~G~iCl~iL~~------~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~----------- 141 (172)
T 2y9m_A 84 ISFMQNN--ILHCNVKSATGEICLNILKP------EEWTPVW-DLLHCVHAVWRLLREPVC--DSPLDV----------- 141 (172)
T ss_dssp EEECTTS--CCCTTEETTTTEECCGGGST------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH-----------
T ss_pred EEEeeCC--eecCCCcCCCCEEeccccCC------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCH-----------
Confidence 99999 8 9999995 899999999972 6999995 999999999999999999 899543
Q ss_pred HHHhhHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHh
Q 046867 456 SNMYNERAFILSLKTMLYTVRR-PPKHFNDFVSGHFYQ 492 (588)
Q Consensus 456 s~~YNe~v~~~s~ktm~~~Lr~-pPk~Fed~V~~HF~~ 492 (588)
.++.++++ .++.|++.|+++.++
T Consensus 142 --------------~aa~~~~~~d~~~f~~~~~~~~~~ 165 (172)
T 2y9m_A 142 --------------DIGNIIRCGDMSAYQGIVKYFLAE 165 (172)
T ss_dssp --------------HHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33455666 677777766666554
No 35
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-34 Score=259.83 Aligned_cols=115 Identities=27% Similarity=0.502 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc-cCCC
Q 046867 312 KLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR-LNPN 390 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I-fHPN 390 (588)
.+.+||++|+++|+++++.||++.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ + ||||
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~~HPn 83 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK--PPKHTH 83 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS--CCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC--CCCCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998 6 9999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCC
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 436 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnP 436 (588)
||.+|+|||++|+ +.|+|++ +|.+||++||+||.+|++
T Consensus 84 v~~~G~iCl~iL~-------~~W~P~~-~i~~vl~si~~ll~~p~~ 121 (125)
T 2fo3_A 84 VYSNGDICLSLLG-------DDYNPSL-SISGLVLSIISMLSSAKE 121 (125)
T ss_dssp BCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHC----
T ss_pred CCCCCEEEchhcC-------CCCCCCC-cHHHHHHHHHHHHhCccc
Confidence 9999999999997 7999995 999999999999988776
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.4e-34 Score=269.46 Aligned_cols=147 Identities=23% Similarity=0.436 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 313 LVKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~-p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
+.+||++|++.|+++++.||.+. +.++|+..|+++|. |+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 79 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNI 79 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCC--CccccC
Confidence 46899999999999999999855 57889999999998 999999999999999999999999999999999 999999
Q ss_pred CCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHHH
Q 046867 392 YNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTM 471 (588)
Q Consensus 392 y~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~ktm 471 (588)
|.+|+|||++|+. ++|+|++ +|.+||++||+||.+||| ++|... .+
T Consensus 80 ~~~G~iCl~iL~~------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~-------------------------~a 125 (154)
T 1c4z_D 80 DEKGQVCLPVISA------ENWKPAT-KTDQVIQSLIALVNDPQP--EHPLRA-------------------------DL 125 (154)
T ss_dssp CTTCBBCCTTTSS------SSCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH-------------------------HH
T ss_pred CCCCEEECCCCCC------CCCCCCC-cHHHHHHHHHHHHcCCCC--CchhhH-------------------------HH
Confidence 9999999999962 6999996 999999999999999998 888543 33
Q ss_pred HHhhcCCCcchHHHHHHHHHhcHHH
Q 046867 472 LYTVRRPPKHFNDFVSGHFYQRAHD 496 (588)
Q Consensus 472 ~~~Lr~pPk~Fed~V~~HF~~~a~~ 496 (588)
+.++++.++.|++.|+++.++.|..
T Consensus 126 a~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 126 AEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp HHHHHTCSSTTHHHHHHHHTTC---
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccc
Confidence 4567788999999998888877753
No 37
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=8.1e-34 Score=284.89 Aligned_cols=147 Identities=28% Similarity=0.542 Sum_probs=131.3
Q ss_pred CChHHHHHHHHHHHHHHhC---CCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCc
Q 046867 309 PSNKLVKRIQEEWKILEND---LPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGL 385 (588)
Q Consensus 309 ~s~~a~KRL~kELk~L~k~---~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 385 (588)
.+..+.+||++||++|+++ ++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~-- 131 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK-- 131 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC--
Confidence 3577899999999999987 47899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHH
Q 046867 386 RLNPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAF 464 (588)
Q Consensus 386 IfHPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~ 464 (588)
||||||| .+|+|||++|. +.|+|++ +|.+||++||+||.+||| ++|....++ .....+...|++.++
T Consensus 132 i~HPNV~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~eaa--~l~~~d~~~f~~~ar 199 (253)
T 3e46_A 132 IWHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDAVVA--NQYKQNPEMFKQTAR 199 (253)
T ss_dssp CCBTTBCTTTCBBCCGGGT-------TCCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHHHH--HHHHHCHHHHHHHHH
T ss_pred CccCCccCCCCeeeccccc-------CCCCCCC-CHHHHHHHHHHHhcCCCC--CChhhHHHH--HHHHHCHHHHHHHHH
Confidence 9999999 69999999997 7999995 999999999999999999 999765543 455666777777776
Q ss_pred HHHHH
Q 046867 465 ILSLK 469 (588)
Q Consensus 465 ~~s~k 469 (588)
..+.+
T Consensus 200 ~~t~~ 204 (253)
T 3e46_A 200 LWAHV 204 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-34 Score=273.66 Aligned_cols=122 Identities=27% Similarity=0.456 Sum_probs=113.8
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc
Q 046867 308 QPSNKLVKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR 386 (588)
Q Consensus 308 ~~s~~a~KRL~kELk~L~k~~P~gI~V~-p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I 386 (588)
..+..+.+||++|+++| ++++||++. ++++|+..|+++| ||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~--i 96 (180)
T 2nvu_C 22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--V 96 (180)
T ss_dssp CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC--C
T ss_pred CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc--C
Confidence 34567899999999999 578999998 7899999999988 9999999999999999999999999999999999 9
Q ss_pred cCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcc
Q 046867 387 LNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWE 444 (588)
Q Consensus 387 fHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~ 444 (588)
||||||.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|+..
T Consensus 97 ~HPNV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~ 144 (180)
T 2nvu_C 97 YHPNIDLEGNVALNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNK 144 (180)
T ss_dssp CBTTBCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH
T ss_pred ccCCCCCCCcEEccccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCccCH
Confidence 99999999999999998 7999996 999999999999999998 899643
No 39
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.8e-34 Score=269.03 Aligned_cols=117 Identities=24% Similarity=0.498 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcC
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLY 392 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 392 (588)
+.+||++|++.|+++ ||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||||
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPni~ 77 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--LLHPNVD 77 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTTBC
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC--CccCcCc
Confidence 358999999999874 78999999999999999999999999999999999999999999999999999 9999999
Q ss_pred -CCCceeeecccccCCCCCCCCccccccHHHHHHH-HHHHhcccCCCCCCCCcc
Q 046867 393 -NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVS-IQALILNERPYFNEPGWE 444 (588)
Q Consensus 393 -~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlS-IQsLLl~PnPyfnEPg~~ 444 (588)
.+|+|||++|+ +.|+|++ +|.+||++ ||+||.+||| ++|+..
T Consensus 78 ~~~G~iCl~il~-------~~W~p~~-~i~~vl~~ii~~Ll~~Pn~--~~P~n~ 121 (152)
T 2onu_A 78 EASGSVCLDVIN-------QTWTPLY-SLVNVFEVFLPQLLTYPNP--SDPLNS 121 (152)
T ss_dssp TTTCBBCHHHHH-------HHCCTTC-CHHHHHHTHHHHHHHSCCC--SSCSSH
T ss_pred CcCCeEeccccc-------ccCCCCC-CHHHHHHHHHHHHHhCCCC--CCcccH
Confidence 69999999998 6899995 99999999 6999999999 999654
No 40
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-34 Score=271.43 Aligned_cols=118 Identities=22% Similarity=0.457 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
..+.+||++||++|++ +||.+.+. +|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 24 ~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~--i~HPN 97 (179)
T 2z5d_A 24 SPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK--IFHPN 97 (179)
T ss_dssp CHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTT
T ss_pred hHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC--CccCc
Confidence 3588999999999985 58888887 578999999999999999999999999999999999999999999 99999
Q ss_pred cCC-CCceeeecccccCCCCCCCCccccccHHHHHHH-HHHHhcccCCCCCCCCcc
Q 046867 391 LYN-CGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVS-IQALILNERPYFNEPGWE 444 (588)
Q Consensus 391 Vy~-~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlS-IQsLLl~PnPyfnEPg~~ 444 (588)
||. +|+|||++|+ +.|+|++ +|.+||++ ||+||.+||| ++|...
T Consensus 98 V~~~~G~ICL~iL~-------~~WsP~~-ti~~iL~s~I~~Ll~~Pn~--~~p~n~ 143 (179)
T 2z5d_A 98 IDEASGTVCLDVIN-------QTWTALY-DLTNIFESFLPQLLAYPNP--IDPLNG 143 (179)
T ss_dssp BCTTTCBBCHHHHH-------HHCCTTC-CTTHHHHTHHHHHHHSCCC--SSCSCH
T ss_pred CCCCCCeEeccccc-------cCCCCCC-CHHHHHHHHHHHHHhCCCC--CCccCH
Confidence 997 9999999998 6999995 99999999 9999999999 899654
No 41
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=5.2e-33 Score=268.11 Aligned_cols=151 Identities=23% Similarity=0.424 Sum_probs=131.7
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCeEEE----ecCCCCc---eEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCccc
Q 046867 307 EQPSNKLVKRIQEEWKILENDLPDTIFVR----VYESRMD---LLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVH 379 (588)
Q Consensus 307 ~~~s~~a~KRL~kELk~L~k~~P~gI~V~----p~ednl~---~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~ 379 (588)
......+.+||++||++|+ +++||++. +.++|+. .|+++|. |++|||+||+|+|+|.||++||++||+|+
T Consensus 24 ~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~ 100 (190)
T 3o2u_A 24 QPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV 100 (190)
T ss_dssp SCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred CCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence 3456778999999999998 78899998 7899999 9999997 78899999999999999999999999999
Q ss_pred ccCCCcccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHh
Q 046867 380 YHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMY 459 (588)
Q Consensus 380 F~T~~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~Y 459 (588)
|.|+ |||||||.+|+|||++|+ +.|+|+. +|.+||++|++||.+||| ++|...
T Consensus 101 f~t~--i~HPnV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~pln~--------------- 153 (190)
T 3o2u_A 101 CLKK--IFHPNIDLKGNVCLNILR-------EDWSPAL-DLQSIITGLLFLFLEPNP--NDPLNK--------------- 153 (190)
T ss_dssp ECSC--CCCTTBCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH---------------
T ss_pred EecC--cccCCCCCCCeEechhcc-------CCCCCCC-CHHHHHHHHHHHHhCCCC--CcchhH---------------
Confidence 9999 999999999999999998 7999985 999999999999999999 899542
Q ss_pred hHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHhcHHHHHHHHHHHhccCcccc
Q 046867 460 NERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGS 512 (588)
Q Consensus 460 Ne~v~~~s~ktm~~~Lr~pPk~Fed~V~~HF~~~a~~Il~~~k~~~~ga~vg~ 512 (588)
.++.+++++++.|++ .+++|+.|..+..
T Consensus 154 ----------~aa~~~~~d~~~f~~---------------~ar~~~~~~~~~~ 181 (190)
T 3o2u_A 154 ----------DAAKLLCEGEKEFAE---------------AVRLTMSGGSIEH 181 (190)
T ss_dssp ----------HHHHHHHTCHHHHHH---------------HHHHHHBTCEETT
T ss_pred ----------HHHHHHHHCHHHHHH---------------HHHHHHHhcCCCC
Confidence 344567777778877 4556676665543
No 42
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.98 E-value=5e-33 Score=255.63 Aligned_cols=108 Identities=31% Similarity=0.570 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEE--ecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCccc--CC
Q 046867 314 VKRIQEEWKILENDLPDTIFVR--VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRL--NP 389 (588)
Q Consensus 314 ~KRL~kELk~L~k~~P~gI~V~--p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~If--HP 389 (588)
.+||++|+++|++++++||++. +.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ +| ||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~--i~~~HP 101 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE--NIPVHP 101 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS--CCCCBT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC--CcCCCc
Confidence 3999999999999999999976 788999999999999999999999999999999999999999999999 77 99
Q ss_pred CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHh
Q 046867 390 NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 431 (588)
Q Consensus 390 NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLL 431 (588)
|||.+|+|||++|+ ++|+|++ +|.+||++||+||
T Consensus 102 NV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~slL 135 (136)
T 2a7l_A 102 HVYSNGHICLSILT-------EDWSPAL-SVQSVCLSIISML 135 (136)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHT
T ss_pred cCCCCCeEEchhcC-------CCCCCCC-cHHHHHHHHHHHh
Confidence 99999999999998 7999996 9999999999998
No 43
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.98 E-value=2.1e-32 Score=257.91 Aligned_cols=128 Identities=18% Similarity=0.253 Sum_probs=115.3
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCC-eEEEe-cCCC--CceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCC
Q 046867 308 QPSNKLVKRIQEEWKILENDLPDT-IFVRV-YESR--MDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 308 ~~s~~a~KRL~kELk~L~k~~P~g-I~V~p-~edn--l~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
.....+.+||++|+++|++++++| |.+.+ +++| +..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 445778999999999999999998 67776 5665 8899999999999999999999999999999999999999999
Q ss_pred CcccCCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhc-ccCCCCCCCCccc
Q 046867 384 GLRLNPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALIL-NERPYFNEPGWES 445 (588)
Q Consensus 384 ~~IfHPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl-~PnPyfnEPg~~~ 445 (588)
||||||| .+|+|||++|+.| +.|+|++ +|.+||++||+||. .||+ ++|....
T Consensus 101 --i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~n~e 154 (160)
T 2a4d_A 101 --INMNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQPPE 154 (160)
T ss_dssp --CCCTTBCTTTCBBCGGGSHHH-----HTCCTTC-CHHHHHHHHHHHHTSTTTT--TCCCCCT
T ss_pred --ceeCCEECCCCEEehhhcCCc-----cCCCccC-cHHHHHHHHHHHHccCCCC--CCCCChh
Confidence 9999999 7999999999865 5899995 99999999999995 5788 9997654
No 44
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.98 E-value=7.1e-33 Score=263.22 Aligned_cols=140 Identities=22% Similarity=0.393 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCc
Q 046867 312 KLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNL 391 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 391 (588)
.+.+||++|++.|++++. +| ..++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~--i~HPNi 85 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR--ILHPNV 85 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTTB
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC--cccccC
Confidence 567999999999999874 44 358899999999999999999999999999999999999999999999 999999
Q ss_pred C-CCCceeeecccccCCCCCCCCccccccHHHHHHHH-HHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHH
Q 046867 392 Y-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSI-QALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK 469 (588)
Q Consensus 392 y-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSI-QsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~k 469 (588)
| .+|+|||++|+ +.|+|++ +|.+||++| |+||.+||| ++|+...++ .....+...|++.++..+.+
T Consensus 86 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~sil~~ll~~Pn~--~~p~n~~aa--~~~~~d~~~y~~~vr~~~~~ 153 (171)
T 1yf9_A 86 DERSGSVCLDVIN-------QTWTPMY-QLENIFDVFLPQLLRYPNP--SDPLNVQAA--HLLHADRVGFDALLREHVST 153 (171)
T ss_dssp CTTTCBBCHHHHH-------HHCCTTC-CTHHHHHTHHHHHHHSCCS--SCCSCHHHH--HHHHHCHHHHHHHHHHHHHH
T ss_pred cccCCeEeccccc-------cCCCCCC-cHHHHHHHHHHHHHhCCCC--CCcccHHHH--HHHHHCHHHHHHHHHHHHHH
Confidence 9 69999999998 6899995 999999998 899999999 999654332 23344444455554444433
No 45
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.98 E-value=2.4e-32 Score=256.34 Aligned_cols=129 Identities=19% Similarity=0.349 Sum_probs=116.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhC-CCCCeEEEecC-C--CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccc
Q 046867 305 SLEQPSNKLVKRIQEEWKILEND-LPDTIFVRVYE-S--RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHY 380 (588)
Q Consensus 305 s~~~~s~~a~KRL~kELk~L~k~-~P~gI~V~p~e-d--nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F 380 (588)
........+.+||++|+++|+++ ++.||.+.+.. + |+..|+++|.||+||||+||+|+|+|.||++||++||+|+|
T Consensus 14 ~~~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F 93 (156)
T 2q0v_A 14 LYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKF 93 (156)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred cCCcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEE
Confidence 34456677889999999999998 78899998843 3 59999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCcCCCCce---eeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccc
Q 046867 381 HSGGLRLNPNLYNCGKV---CLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESM 446 (588)
Q Consensus 381 ~T~~~IfHPNVy~~GkV---CLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~ 446 (588)
.|+ |||||||.+|+| ||++|+ .|+|++ +|.+||++||+||.+||| ++|.....
T Consensus 94 ~t~--i~HPNV~~~G~icisCL~iL~--------~WsP~~-ti~~vL~sI~~ll~~Pn~--~~p~n~~a 149 (156)
T 2q0v_A 94 DTK--IEMSCVDNCGRVIKNNLHILK--------NWNRNY-TIETILISLRQEMLSSAN--KRLPQPNE 149 (156)
T ss_dssp SBC--CCCTTBCTTSBBCGGGSHHHH--------TCCTTC-CHHHHHHHHHHHTTSTTT--TTCCCCCT
T ss_pred Ecc--cccCCCccCCeEehhhccccc--------CCCCcC-cHHHHHHHHHHHHhCCCC--CCcCChHH
Confidence 999 999999999999 899997 599995 999999999999999999 88865543
No 46
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.98 E-value=1e-31 Score=284.04 Aligned_cols=167 Identities=25% Similarity=0.469 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCC
Q 046867 311 NKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPN 390 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 390 (588)
+.+.|||++|++.|++++|+||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 79 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHPN 79 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC--CCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc--ccccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccHHHHHHHHHhhHHHHHHHHHH
Q 046867 391 LYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKT 470 (588)
Q Consensus 391 Vy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~~~e~~s~~YNe~v~~~s~kt 470 (588)
|+.+|+|||++|. +.|+|+. ||.+||++|++||.+||| ++|....++ .....+...|++.++..+.
T Consensus 80 v~~~G~iCl~il~-------~~W~p~~-~i~~vL~~i~~ll~~pnp--~~p~n~~aa--~~~~~d~~~y~~~~~~~~~-- 145 (399)
T 4ddg_A 80 INSNGSISLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVPEIA--RIYKTDREKYNRIAREWTQ-- 145 (399)
T ss_dssp BCTTCBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSHHHH--HHHHHCHHHHHHHHHHHHH--
T ss_pred cCCCCeEeCcccc-------cCCCccc-cHHHHHHHHHHHHcCCCC--CchhhHHHH--HHHHHCHHHHHHHHHHHHH--
Confidence 9999999999997 7999995 999999999999999999 899654433 3445555566665554443
Q ss_pred HHHhhcCCCcchHHHHHHHHHhcHHH
Q 046867 471 MLYTVRRPPKHFNDFVSGHFYQRAHD 496 (588)
Q Consensus 471 m~~~Lr~pPk~Fed~V~~HF~~~a~~ 496 (588)
.+...+..+.+.|....+....+
T Consensus 146 ---~~a~~~v~~De~i~~q~~~I~~e 168 (399)
T 4ddg_A 146 ---KYAMGGSAYDEAIMAQQDRIQQE 168 (399)
T ss_dssp ---HHTSCTTHHHHHHHHHHHHHHHH
T ss_pred ---HhhccccchhHHHHHHHHHHHhh
Confidence 34445666766665544433333
No 47
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.97 E-value=2.8e-32 Score=259.15 Aligned_cols=146 Identities=17% Similarity=0.212 Sum_probs=121.7
Q ss_pred cccCCCccchhcccc-CCCCCChHHHHHHHHHHHHHHhCCCCC-eEEEe-cCCC--CceEEEEEEcCCCCCcCCceEEEE
Q 046867 290 AVEDHSDHYYASNVS-SLEQPSNKLVKRIQEEWKILENDLPDT-IFVRV-YESR--MDLLRAVIVGAEGTPYHDGLFFFD 364 (588)
Q Consensus 290 ~v~~~sdH~f~~~~s-s~~~~s~~a~KRL~kELk~L~k~~P~g-I~V~p-~edn--l~~w~avI~GP~gTPYeGG~F~fd 364 (588)
.+...+++++..... ........+.+||++|+++|++++++| +.+.+ +++| ++.|+++|.||+||||+||+|+|+
T Consensus 12 ~~s~~~~~~~~~p~~~~~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~ 91 (170)
T 2hlw_A 12 SQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91 (170)
T ss_dssp CSCSSSCSSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEE
T ss_pred cccccccccccCCccccCCcccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEE
Confidence 344556666653221 111234557899999999999999999 56766 5665 889999999999999999999999
Q ss_pred EECCCCCCCCCCcccccCCCcccCCCcC-CCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcc-cCCCCCCCC
Q 046867 365 VFFPSDYPNVPPNVHYHSGGLRLNPNLY-NCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN-ERPYFNEPG 442 (588)
Q Consensus 365 I~FP~dYP~~PPkV~F~T~~~IfHPNVy-~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~-PnPyfnEPg 442 (588)
|.||++||++||+|+|.|+ ||||||| .+|+|||++|+.| +.|+|++ ||.+||++||+||.+ ||+ ++|.
T Consensus 92 i~fp~~YP~~PP~v~F~T~--i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~ 161 (170)
T 2hlw_A 92 IECGPKYPEAPPFVRFVTK--INMNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQ 161 (170)
T ss_dssp EECCSSCTTSCCEEEECBC--CCCSSBCSSSCBBCTTTCHHH-----HTCCSSC-CHHHHHHHHHHHHHSTTTS--SSCC
T ss_pred EECCCCCCCCCCeeEEecc--cccCCEeCCCCEEEhhhcCCC-----CCCCccC-cHHHHHHHHHHHHccCCCC--CCCC
Confidence 9999999999999999999 9999999 8999999999855 5899995 999999999999974 788 9987
Q ss_pred ccc
Q 046867 443 WES 445 (588)
Q Consensus 443 ~~~ 445 (588)
...
T Consensus 162 n~e 164 (170)
T 2hlw_A 162 PPE 164 (170)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 48
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=1.7e-31 Score=256.89 Aligned_cols=120 Identities=20% Similarity=0.453 Sum_probs=102.9
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCccc
Q 046867 308 QPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRL 387 (588)
Q Consensus 308 ~~s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~If 387 (588)
..+..+.+||++|+++|++++++||.+.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~---- 85 (187)
T 2f4w_A 10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP---- 85 (187)
T ss_dssp ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC----
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC----
Confidence 4566789999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCC
Q 046867 388 NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 436 (588)
Q Consensus 388 HPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnP 436 (588)
|||++.+|+|||++|++| .+.|+|++ +|.+||++||+||.+|||
T Consensus 86 ~~~~~~~G~ICL~iL~~~----~~~W~P~~-ti~~vL~si~sll~~p~p 129 (187)
T 2f4w_A 86 NGRFKCNTRLCLSITDFH----PDTWNPAW-SVSTILTGLLSFMVEKGP 129 (187)
T ss_dssp CSSBCTTSCBC--------------CCTTC-CHHHHHHHHHHHHHSCCC
T ss_pred CceeccCCeEeeeccccC----ccCCCCcC-cHHHHHHHHHHHhcCCCC
Confidence 899999999999999643 37999995 999999999999999998
No 49
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.97 E-value=4.8e-32 Score=248.60 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHhC-CCCCeEEEecC-C--CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcc
Q 046867 311 NKLVKRIQEEWKILEND-LPDTIFVRVYE-S--RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLR 386 (588)
Q Consensus 311 ~~a~KRL~kELk~L~k~-~P~gI~V~p~e-d--nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~I 386 (588)
..+.+||++|+++|+++ ++.||.+.+.. + |+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 82 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK--I 82 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC--C
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc--c
Confidence 45679999999999998 78899998843 4 48999999999999999999999999999999999999999999 9
Q ss_pred cCCCcCCC-Cce--eeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCccc
Q 046867 387 LNPNLYNC-GKV--CLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWES 445 (588)
Q Consensus 387 fHPNVy~~-GkV--CLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~ 445 (588)
||||||.+ |+| ||++|+ .|+|++ +|.+||++||+||.+||| ++|....
T Consensus 83 ~HPnv~~~~G~i~~cL~~l~--------~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~~~~ 133 (138)
T 1jat_B 83 NLPCVNPTTGEVQTDFHTLR--------DWKRAY-TMETLLLDLRKEMATPAN--KKLRQPK 133 (138)
T ss_dssp CCTTBCTTTCBBCTTSHHHH--------TCCTTC-CHHHHHHHHHHHHTSHHH--HTSCCCC
T ss_pred ccCCEeCCCCEEeeecccCC--------CCCCcC-cHHHHHHHHHHHHcCCCC--CCCCCcc
Confidence 99999975 999 999996 799995 999999999999999999 8886543
No 50
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.97 E-value=1.6e-31 Score=252.22 Aligned_cols=120 Identities=20% Similarity=0.371 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHhCC------------CCCeEEEecCCCCceEEEEEEcCCCCCcC--CceEEEEEECCCCCCCCCCc
Q 046867 312 KLVKRIQEEWKILENDL------------PDTIFVRVYESRMDLLRAVIVGAEGTPYH--DGLFFFDVFFPSDYPNVPPN 377 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~------------P~gI~V~p~ednl~~w~avI~GP~gTPYe--GG~F~fdI~FP~dYP~~PPk 377 (588)
.+.|||++|++.|++++ +.+|++.+.++|+..|+++|.||+||||+ ||.|+|+|.||++||++||+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 46799999999999987 78999999999999999999999999999 99999999999999999999
Q ss_pred ccccCCCcccCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHH-HHHHHhcc--cCCCCCCCCc
Q 046867 378 VHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLV-SIQALILN--ERPYFNEPGW 443 (588)
Q Consensus 378 V~F~T~~~IfHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLl-SIQsLLl~--PnPyfnEPg~ 443 (588)
|+|.|+ |||||||.+|+|||++|+ +.|+|++ +|.+||+ .|++|+.. ||| ++|..
T Consensus 88 v~f~t~--i~HPnv~~~G~iCl~il~-------~~W~p~~-~i~~vll~~l~~l~~~~~pn~--~~p~n 144 (167)
T 4ds2_A 88 VRFVTP--VYSPLVTGEGGICDRMVN-------DFWTPDQ-HASDVIKLVLDRVFSQYKSRR--DDDVN 144 (167)
T ss_dssp EEESSC--CCCSSCCTTSCCCTHHHH-------TTCCTTS-CHHHHHHHHHHHHHTSTTSCC--SCCCC
T ss_pred EEEeCC--cccccCCCCCEEEcccCc-------CCCCCCC-ChHHHHHHHHHHHHhcCCCCC--cchHh
Confidence 999999 999999999999999998 7999995 9999754 67788765 555 88854
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=3.2e-31 Score=255.04 Aligned_cols=145 Identities=17% Similarity=0.280 Sum_probs=124.2
Q ss_pred CCCChHHHHHHHHHHHHHHhCC---CCCeEEEecCCCCceEEEEEEcC-CCCCcCC-----------ceEEEEEECCCCC
Q 046867 307 EQPSNKLVKRIQEEWKILENDL---PDTIFVRVYESRMDLLRAVIVGA-EGTPYHD-----------GLFFFDVFFPSDY 371 (588)
Q Consensus 307 ~~~s~~a~KRL~kELk~L~k~~---P~gI~V~p~ednl~~w~avI~GP-~gTPYeG-----------G~F~fdI~FP~dY 371 (588)
...+..+.+||++||++|++++ +.+|.+.+.++|+..|+++|.|| ++|||+| |.|.|+|.||++|
T Consensus 22 ~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y 101 (186)
T 1zuo_A 22 VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF 101 (186)
T ss_dssp --CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence 3456788999999999999988 68899999999999999999998 9999998 8999999999999
Q ss_pred CCCCCcccccCCCcccCC-CcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCCCCCCCcccccccH
Q 046867 372 PNVPPNVHYHSGGLRLNP-NLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSME 450 (588)
Q Consensus 372 P~~PPkV~F~T~~~IfHP-NVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPyfnEPg~~~~~~t~ 450 (588)
|++||+|+|.|+ +||| |||.+|+|||++|+. +.|+|++ +|.+||++||+||.+|++..+
T Consensus 102 P~~PP~V~f~tp--i~hPnnV~~~G~ICL~iL~~------~~WsP~~-ti~~VL~sI~slL~~p~a~~~----------- 161 (186)
T 1zuo_A 102 PFDPPFVRVVLP--VLSGGYVLGGGALCMELLTK------QGWSSAY-SIESVIMQINATLVKGKARVQ----------- 161 (186)
T ss_dssp TSSCCEEEEEES--CEESTTBCGGGBBCCGGGST------TTCCTTS-CHHHHHHHHHHHHHHTTCEEC-----------
T ss_pred CCCCCeEEEeCC--ccCCCccCCCCcEEeccCCC------CCCCCcC-cHHHHHHHHHHHHcCCChhHh-----------
Confidence 999999999999 9999 699999999999972 6899995 999999999999999876211
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 046867 451 EGERQSNMYNERAFILSLKTML 472 (588)
Q Consensus 451 ~~e~~s~~YNe~v~~~s~ktm~ 472 (588)
...+...|+..+++.+.+.++
T Consensus 162 -~~~~~~~Y~~~~~~~~~~~~~ 182 (186)
T 1zuo_A 162 -FGANKNQYNLARAQQSYNSIV 182 (186)
T ss_dssp -TTCCTTCCCHHHHHHHHHHHH
T ss_pred -hccCHHHHhHHHHHHHHHHHH
Confidence 111245688777766665543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.85 E-value=1.6e-22 Score=191.68 Aligned_cols=102 Identities=21% Similarity=0.386 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCc----------eEEEEEECCCCCCCCCCccc
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDG----------LFFFDVFFPSDYPNVPPNVH 379 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG----------~F~fdI~FP~dYP~~PPkV~ 379 (588)
...|.+||++|++.|++ ++.+.++|+..|.++|.||+||||+|| .|.++|.||.+||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 47789999999999998 467778899999999999999999999 99999999999999999999
Q ss_pred ccCCCcccCCCcCCCCceeeecccc--cCCCCCCCCccccccHHHHH
Q 046867 380 YHSGGLRLNPNLYNCGKVCLSLLNT--WDGDKNEKWIPSMSTMLQVL 424 (588)
Q Consensus 380 F~T~~~IfHPNVy~~GkVCLSlL~t--W~G~~~E~WsPa~sTI~qVL 424 (588)
|.+. .+||||||.+|+|||++|.. | ..|+|.+ +|.+||
T Consensus 104 F~~~-~~~hpnmY~~G~ICLdIL~kp~W-----s~~~P~~-~IahiL 143 (172)
T 2z6o_A 104 VPEL-DGKTAKMYRGGKICLTDHFKPLW-----ARNVPKF-GLAHLM 143 (172)
T ss_dssp CGGG-TTTCSSBCTTSBBCCCTTHHHHH-----HHHTTSC-CHHHHH
T ss_pred eCCC-CCCCCCCCCCCcEechhhccccc-----cccCCcc-CHHHHH
Confidence 9984 38999999999999999942 4 3566996 999988
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.60 E-value=1.4e-15 Score=143.98 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCCC---CCeEEEecCCCCceEEEEEEcCCCCCcCCce---EEEEEECCCCCCCCCCcccccC--C---
Q 046867 315 KRIQEEWKILENDLP---DTIFVRVYESRMDLLRAVIVGAEGTPYHDGL---FFFDVFFPSDYPNVPPNVHYHS--G--- 383 (588)
Q Consensus 315 KRL~kELk~L~k~~P---~gI~V~p~ednl~~w~avI~GP~gTPYeGG~---F~fdI~FP~dYP~~PPkV~F~T--~--- 383 (588)
+|..+|+..+.+.-| +...+...++....+-..+.|.-.++|+||. |.+.|.||.+||++||.|.|.+ .
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 566778777765444 2233345566677788888888889999999 8899999999999999998865 1
Q ss_pred ---Cccc-CCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCC
Q 046867 384 ---GLRL-NPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 436 (588)
Q Consensus 384 ---~~If-HPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnP 436 (588)
..|+ ||||+.+|+|||++|. .|+|..++|.+||.+|++||.+|||
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~--------~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH--------AWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG--------SCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc--------cCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 1266 9999999999999996 6999656999999999999999998
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.49 E-value=1.1e-14 Score=136.12 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCc----------eEEEEEECCCCCCCCCCccc
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDG----------LFFFDVFFPSDYPNVPPNVH 379 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG----------~F~fdI~FP~dYP~~PPkV~ 379 (588)
...|..||..|+..|-+ +|....++-..|.+.+.||.||+|.|+ .|.+.|.||.+||..||+|+
T Consensus 32 ~~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~ 105 (168)
T 3kpa_A 32 GDKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIA 105 (168)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEee
Confidence 35699999999999965 455555666789999999999999999 89999999999999999999
Q ss_pred ccCCCcccCCCcCCCCceeeecc
Q 046867 380 YHSGGLRLNPNLYNCGKVCLSLL 402 (588)
Q Consensus 380 F~T~~~IfHPNVy~~GkVCLSlL 402 (588)
|.+. ..+|||+|.+|+|||+++
T Consensus 106 Fp~l-dgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 106 LPEL-EGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp CGGG-TTTCSSEETTTEECCCTT
T ss_pred cccc-cCcCccccCCCcEEeccc
Confidence 9983 279999999999999974
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.15 E-value=2.6e-11 Score=113.01 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=82.0
Q ss_pred HHHHHHHHHhCCCC-CeEEEec---CCCCceEEEEEEcCCCCCcCCceEEE--EEECCCCCCCCCCcccccCC----Ccc
Q 046867 317 IQEEWKILENDLPD-TIFVRVY---ESRMDLLRAVIVGAEGTPYHDGLFFF--DVFFPSDYPNVPPNVHYHSG----GLR 386 (588)
Q Consensus 317 L~kELk~L~k~~P~-gI~V~p~---ednl~~w~avI~GP~gTPYeGG~F~f--dI~FP~dYP~~PPkV~F~T~----~~I 386 (588)
..+|+..+.+.-|. ......+ ..++..|.++|. .+|+|+.|.+ .|.||.+||+.||.| |.++ .++
T Consensus 25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~ 99 (146)
T 3obq_A 25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK 99 (146)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence 34566666554442 1112222 246788899998 6899999995 999999999999999 5543 236
Q ss_pred cCCCcCCCCceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcccCCC
Q 046867 387 LNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPY 437 (588)
Q Consensus 387 fHPNVy~~GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~PnPy 437 (588)
.||||+.+|+||+.+|. .|++..++|.++|.+++.+|...-|.
T Consensus 100 ~~~~Vd~~G~i~lpyL~--------~W~~~~snL~~ll~~l~~~F~~epPv 142 (146)
T 3obq_A 100 TGKHVDANGKIYLPYLH--------EWKHPQSDLLGLIQVMIVVFGDEPPV 142 (146)
T ss_dssp CBTTBCTTCBBCCHHHH--------TCCTTTCCHHHHHHHHHHHHHHSCSE
T ss_pred CCCCCCCCCCEeccccc--------ccCCCCCCHHHHHHHHHHHHhhCCCC
Confidence 89999999999999997 58775579999999999999875553
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.39 E-value=0.54 Score=41.33 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccC
Q 046867 313 LVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHS 382 (588)
Q Consensus 313 a~KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T 382 (588)
...+...|+..|+.--+..+.+ .......+++.|..-.|..-+.-.+.+.|.||++||..||.+...+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4566788999998766555433 2222345555554322222234478999999999999999987654
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=88.14 E-value=1.5 Score=38.39 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCC--CCceEEEEEEcCCCCCc--CCceEEEEEECCCCCCCCCCcccccCC
Q 046867 316 RIQEEWKILENDLPDTIFVRVYES--RMDLLRAVIVGAEGTPY--HDGLFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 316 RL~kELk~L~k~~P~gI~V~p~ed--nl~~w~avI~GP~gTPY--eGG~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
+...|+..|+.--+..+.+.-... ....+++.|..+.+..- ..-.+.+.|.||++||..+|.+...+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 578899999876665554432221 23344445543322111 124788999999999999999986653
No 58
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=86.02 E-value=2.7 Score=37.10 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEEecCC------CCceEEEEEEcCCC-C-CcCCceEEEEEECCCCCCCCCCccccc
Q 046867 310 SNKLVKRIQEEWKILENDLPDTIFVRVYES------RMDLLRAVIVGAEG-T-PYHDGLFFFDVFFPSDYPNVPPNVHYH 381 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P~gI~V~p~ed------nl~~w~avI~GP~g-T-PYeGG~F~fdI~FP~dYP~~PPkV~F~ 381 (588)
......+...|+..|+.--+..+.+ .... ....+++.|. +.+ . .-..-.+.+.|.||.+||..||.|...
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQD-LRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEE-CCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred CcchHHHHHHHHHHHHHHCccccee-ccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 3455667889999998766555433 2211 1234555554 222 0 001246889999999999999999764
Q ss_pred C
Q 046867 382 S 382 (588)
Q Consensus 382 T 382 (588)
+
T Consensus 86 ~ 86 (137)
T 1ukx_A 86 N 86 (137)
T ss_dssp E
T ss_pred c
Confidence 3
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=85.41 E-value=3.2 Score=36.88 Aligned_cols=70 Identities=7% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCC-------CCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCC
Q 046867 312 KLVKRIQEEWKILENDLPDTIFVRVYES-------RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 312 ~a~KRL~kELk~L~k~~P~gI~V~p~ed-------nl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
....+...|+..|+.--+..+. ..... ....+++.|....+ .-..-.+.+.|.+|++||..||.|...+.
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~-~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 10 QYYEIQCNELEAIRSIYMDDFT-DLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHHHTTSSSSEE-CCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred chHHHHHHHHHHHHHHChhhhe-ecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 3445677899999865554432 22221 23566777764333 11234788999999999999999987653
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=80.62 E-value=5 Score=38.71 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccCCCcccCCCcCCC
Q 046867 315 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNC 394 (588)
Q Consensus 315 KRL~kELk~L~k~~P~gI~V~p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 394 (588)
.+|.+|+..|-=+. -+.. ...+...+..+..-.| ....+.|.++.+||..||.+...-+ +|
T Consensus 4 ~~li~Ei~~iGW~~----l~~i-d~~~~~i~l~~~D~~g-----R~H~l~v~l~~~yp~~~P~~~~DlP----~~----- 64 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK----LVYA-DTCFSTIKLKAEDASG-----REHLITLKLKAKYPAESPDYFVDFP----VP----- 64 (186)
T ss_dssp CSHHHHHHHHCGGG----EEEE-CTTSSEEEEEEECTTS-----CEEEEEEECCTTTTTSCCEEECCCS----SC-----
T ss_pred HHHHHHHHHhCCce----eeee-cCCccEEEEEEEeCCC-----CeEEEEEEECCCCCCCCCeeEEcCC----CC-----
Confidence 36888888883221 1222 4568888888886554 6889999999999999998876655 01
Q ss_pred CceeeecccccCCCCCCCCccccccHHHHHHHHHHHhcc
Q 046867 395 GKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILN 433 (588)
Q Consensus 395 GkVCLSlL~tW~G~~~E~WsPa~sTI~qVLlSIQsLLl~ 433 (588)
++ -.|+|. ++|..|+..++.+|..
T Consensus 65 --~~------------~~w~~~-ssL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 65 --FC------------ASWTPQ-SSLISIYSQFLAAIES 88 (186)
T ss_dssp --CC------------CCCCTT-CCHHHHHHHHHHHHHH
T ss_pred --cc------------cccCCC-ccHHHHHHHHHHHHHH
Confidence 01 378887 5899998888887744
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.89 E-value=7.6 Score=34.01 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCC--CeEEE-ecCCCCceEEEEEEcCCCCCcCCceEEEEEECCCCCCCCCCcccccC
Q 046867 316 RIQEEWKILENDLPD--TIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHS 382 (588)
Q Consensus 316 RL~kELk~L~k~~P~--gI~V~-p~ednl~~w~avI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T 382 (588)
+...|+..|+.--+. .+.+. -...+...+++.|...... =..-.+.+.|.+|.+||..||.+...+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 466788888764432 33221 1112234666666533210 012378999999999999999987654
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=63.05 E-value=9.8 Score=34.83 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHHHhCCC--CCeEEEecC--------------CC-C--ceEEEEEEcCCCCCcCCceEEEEEECCCC
Q 046867 310 SNKLVKRIQEEWKILENDLP--DTIFVRVYE--------------SR-M--DLLRAVIVGAEGTPYHDGLFFFDVFFPSD 370 (588)
Q Consensus 310 s~~a~KRL~kELk~L~k~~P--~gI~V~p~e--------------dn-l--~~w~avI~GP~gTPYeGG~F~fdI~FP~d 370 (588)
......+-..|+..|+.--| .-+.+. ++ .+ . ..+++.|.-.. + ...+.+.|.+|.+
T Consensus 12 ~~~~~e~Q~eElEaL~SIY~~~de~~v~-d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~--~--~~~i~L~v~lP~~ 86 (154)
T 2daw_A 12 VKESLQLQLLEMEMLFSMFPNQGEVKLE-DVNALTNIKRYLEGTREALPPKIEFVITLQIEE--P--KVKIDLQVTMPHS 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTSEEES-CGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETT--T--TEEEEEEEEECSS
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEe-ccchHHHHHHhhcccccCCCCceEEEEEEecCC--C--CceEEEEEEcCCC
Confidence 34556677789999987655 444331 10 01 1 23444433221 1 1379999999999
Q ss_pred CCCCCCcccccC
Q 046867 371 YPNVPPNVHYHS 382 (588)
Q Consensus 371 YP~~PPkV~F~T 382 (588)
||..+|.+...+
T Consensus 87 YP~~~P~i~l~~ 98 (154)
T 2daw_A 87 YPYLALQLFGRS 98 (154)
T ss_dssp TTSSCCEEEEEC
T ss_pred CCCCCCcEEEEe
Confidence 999999997554
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=54.86 E-value=6 Score=35.91 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCCCCCCcccccCC
Q 046867 360 LFFFDVFFPSDYPNVPPNVHYHSG 383 (588)
Q Consensus 360 ~F~fdI~FP~dYP~~PPkV~F~T~ 383 (588)
.+.+.|.+|.+||..||.+...+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999976654
Done!