BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046870
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGEN 133
GEV+ + + ++ Y +AT+DAFD GWFR+GD+G +GY+ +KDR KD+IISGGEN
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGEN 422
Query: 134 ISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPH 193
+ E+ESV+ P V E AV+G PD+ WGE A V + D + ++I+ YC RL
Sbjct: 423 VYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLAR 481
Query: 194 YMAPRTVVF-EDLPKTSTGKTQKYVLREKAKA 224
Y P+ V+F E +P+ TGK K VLRE+ A
Sbjct: 482 YKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 123/226 (54%), Gaps = 6/226 (2%)
Query: 1 MEELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDP 60
E +G + YGLTET K SL EE+ +KA+ G+P + L + + D
Sbjct: 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP-IPLVRLRVADE 371
Query: 61 VTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIEL 119
+ VP D K +GEV +G + GY N +AT+ A G+FR+GD+ V +GY+E+
Sbjct: 372 -EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEI 430
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVAN 179
KDR KD+I SGGE IS++++E+ L HP V EAAVV P W E P A V + G
Sbjct: 431 KDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVV-VPRGEKPT 489
Query: 180 GEEIINY-CRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAK 223
EE+ + + + P VF E++P+TS GK K LRE+ K
Sbjct: 490 PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 535
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 46 GVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRS 105
G+P +D + IK+P + + GE+M +G VMNGYL T F+ G+F +
Sbjct: 330 GMPSANVD-VKIKNP--------NKEGHGELMIKGANVMNGYLYPTDLT-GTFENGYFNT 379
Query: 106 GDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGET 165
GD+ +GY+ + DR KD+IISGGENI ++E+V P + +A VG PDD WG+
Sbjct: 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQV 439
Query: 166 P-CAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQK 215
P FV D A ++I Y L Y P+ D LP TSTGK Q+
Sbjct: 440 PKLYFVSESDISKA---QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQR 488
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 73 IGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRS--KDIIISG 130
+GE++ RG TV GY N ATQ AF GW +GD+G DGY+ R+ K++I +G
Sbjct: 347 VGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTG 406
Query: 131 GENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDR 190
GEN+ EVE L HP++ +A V+G PD W E A K G + + +
Sbjct: 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466
Query: 191 LPHYMAPRTVVF-EDLPKTSTGKTQKYVLR 219
+ Y P+ VVF E LPK + G + ++
Sbjct: 467 IARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 96/157 (61%), Gaps = 10/157 (6%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF---DGG--WFRSGDLGVRHPDGYIELKDRSKDIII 128
GE++ RG + GY K K Q+ + + G +FR+GD+G +G++ +DR K++I
Sbjct: 384 GEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443
Query: 129 SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLK---DGCVANGEEIIN 185
G I+ E+E++L H +V + AV+G+PD+ GE P AF+ LK G V + E+II
Sbjct: 444 YKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKV-DEEDIIE 502
Query: 186 YCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
+ R+R+ Y R V F E+LP+T++GK + +LREK
Sbjct: 503 WVRERISGYKRVREVEFVEELPRTASGKLLRRLLREK 539
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 4/169 (2%)
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDG 115
+ DP T K +P IG + +G V GY + + T+ F D G+F +GDLG G
Sbjct: 333 VTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERG 390
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
Y+ + R KD++I+GG N+ E+ES + + P V+E+AV+G P +GE A V G
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKG 450
Query: 176 CVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREKAK 223
+ ++++ +L + P+ V+F +DLP+ + GK QK VLRE K
Sbjct: 451 ATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYK 499
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 10/173 (5%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP 113
EI+++D +VP +G++ +G + Y N + ++ F G W RSGD R P
Sbjct: 362 EIELRDEAG-HAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP 418
Query: 114 DGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPC-AFVKL 172
+G RS D++ G+ +S +EVE VL H +VLEAAVVG DH G AFV L
Sbjct: 419 NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV--DHGGLVKTRAFVVL 476
Query: 173 KDGCVAN---GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
K + EE+ + +DRL + PR +VF +DLPKT+TGK Q++ LRE+
Sbjct: 477 KREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVT 62
E+G L +G+ E G V + D + KI QG P DE+ + D
Sbjct: 325 EIGCQLQQVFGMAE----GLVNYTRLD------DSAEKIIHTQGYPMCPDDEVWVAD--- 371
Query: 63 MKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKD 121
+ P +G +M RG GY K+ + AFD G++ SGDL P+GYI ++
Sbjct: 372 AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQG 431
Query: 122 RSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGE 181
R KD I GGE I+ E+E++L HP+V+ AA+V D+ GE CA++ +K+ A
Sbjct: 432 REKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRA--V 489
Query: 182 EIINYCRDR-LPHYMAP-RTVVFEDLPKTSTGKTQKYVLRE 220
++ + R++ + + P R + LP T+ GK K LR+
Sbjct: 490 QVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQ 530
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDG 115
+ DP T +P IG + G V GY + + T F D G+F +GDLG G
Sbjct: 333 VTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
Y+ + R D++I+GG N+ E+ES + + P V+E+AV+G P +GE AFV L
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXRE 450
Query: 176 CVAN---GEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ EE+ + DRL + P V+F +DLP+ + G Q VLRE
Sbjct: 451 FAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 499
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE+ RG +M+GY+ N +AT D GW SGD+ D + + DR K +I G
Sbjct: 388 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 447
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
++ E+ES+L HP++ +A V G PDD GE P A V L+ G +EI++Y ++
Sbjct: 448 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 507
Query: 193 HYMAPR--TVVFEDLPKTSTGKTQKYVLRE---KAKAMGSISKKGTSKL 236
R V +++PK TGK +RE KAK K G SKL
Sbjct: 508 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK------KGGKSKL 550
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE+ RG +M+GY+ N +AT D GW SGD+ D + + DR K +I G
Sbjct: 388 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 447
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
++ E+ES+L HP++ +A V G PDD GE P A V L+ G +EI++Y ++
Sbjct: 448 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 507
Query: 193 HYMAPR--TVVFEDLPKTSTGKTQKYVLRE---KAKAMGSISKKGTSKL 236
R V +++PK TGK +RE KAK K G SKL
Sbjct: 508 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK------KGGKSKL 550
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE+ RG +M+GY+ N +AT D GW SGD+ D + + DR K +I G
Sbjct: 393 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 452
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
++ E+ES+L HP++ +A V G PDD GE P A V L+ G +EI++Y ++
Sbjct: 453 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 512
Query: 193 HYMAPR--TVVFEDLPKTSTGKTQKYVLRE---KAKAMGSISKKGTSKL 236
R V +++PK TGK +RE KAK K G SKL
Sbjct: 513 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK------KGGKSKL 555
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE+ RG +M+GY+ N +AT D GW SGD+ D + + DR K +I G
Sbjct: 393 GELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGC 452
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
++ E+ES+L HP++ +A V G PDD GE P A V L+ G +EI++Y ++
Sbjct: 453 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 512
Query: 193 HYMAPR--TVVFEDLPKTSTGKTQKYVLRE---KAKAMGSISKKGTSKL 236
R V +++PK TGK +RE KAK K G SKL
Sbjct: 513 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK------KGGKSKL 555
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 69 DAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDR-SKDI 126
D +++GE+ RG + YL AT AF + G+FR+GD+ VR PDGY+ + R + D+
Sbjct: 349 DGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDL 408
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAF-VKLKDGCVANGEEIIN 185
I SGG I E+E+ L HP V EAAV G PD GE A+ V + +
Sbjct: 409 IKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLAD 468
Query: 186 YCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVL 218
+ RL + PR V + D +P+ GK K L
Sbjct: 469 HVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 17/220 (7%)
Query: 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTM 63
G TL +G+ E G V ++ L E+ + QG P DE + D
Sbjct: 322 FGCTLQQVFGMAE----GLV-----NYTRLDDPEEIIVNT-QGKPMSPYDESRVWDDHDR 371
Query: 64 KSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDR 122
P + G ++ RG + GY K + +F + G++R+GD+ DGYI ++ R
Sbjct: 372 DVKPGET---GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR 428
Query: 123 SKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEE 182
+KD I GGE ++ EVE+ L +HP+V +AA+V PD GE C F+ +D E
Sbjct: 429 AKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAE 487
Query: 183 IINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ + R+R L Y P V F E P+T GK K LRE
Sbjct: 488 LKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDG 115
+ DP T +P IG + G V GY + + T F D G+F +GDLG G
Sbjct: 333 VTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
Y+ + R D++I+GG N+ E+ES + + P V+E+AV+G P +GE AFV L
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXRE 450
Query: 176 CVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ ++++ +L + P V+F +DLP+ + G Q VLRE
Sbjct: 451 FAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 45 QGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWF 103
QG P DE + D P + G ++ RG + GY K + +F + G++
Sbjct: 353 QGKPXSPYDESRVWDDHDRDVKPGET---GHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 104 RSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163
R+GD+ DGYI ++ R+KD I GGE ++ EVE+ L +HP+V +AA V PD G
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLG 469
Query: 164 ETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
E C F+ +D E+ + R+R L Y P V F E P+T GK K LRE
Sbjct: 470 ERSCVFIIPRDEA-PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 57 IKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDG 115
+ DP T +P IG + G V GY + + T F D G+F +GDLG G
Sbjct: 333 VTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDG 175
Y+ + R D++I+GG N+ E+ES + + P V+E+AV+G P +GE A V G
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXG 450
Query: 176 CVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLRE 220
+ ++++ +L + P V+F +DLP+ + G Q VLRE
Sbjct: 451 ATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 4/170 (2%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRH 112
E+ I DP T S+P + GE+ RG+ +M GYL + +AT D GW +GD+G
Sbjct: 365 EMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL 172
D + + DR K++I G ++ E+E++L +HP + +AAVVG D+ GE P AFV
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 173 KDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK 221
+ A +EI Y ++ Y + V F E +PK +GK + L+EK
Sbjct: 483 SEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEK 532
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGE 132
GE+ +G +M GY+ N +AT D GW SGD+ DGY + DR K +I G
Sbjct: 423 GELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGY 482
Query: 133 NISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLP 192
+ E+ES+L HP + +A V G PD GE P A V L++G +E+++Y ++
Sbjct: 483 QVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVT 542
Query: 193 HYMAPRTVV--FEDLPKTSTGKTQKYVLREKAKAMGSISK 230
R V +++PK TGK +RE MG SK
Sbjct: 543 ASKRLRGGVKFVDEVPKGLTGKIDARKIRE-ILMMGKKSK 581
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 10 HAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSD 69
YGLTET + + P+ + P + + VP ID+ T KS+ +
Sbjct: 340 QGYGLTET---TSAIIITPEGDDKPG------ASGKVVPLFKAKVIDLD---TKKSLGPN 387
Query: 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIII 128
+ GEV +G +M GY+ N +AT++ D GW +GD+G + + + DR K +I
Sbjct: 388 RR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK 445
Query: 129 SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR 188
G + E+ESVL HPS+ +A V G PD GE P A V L+ G +E+++Y
Sbjct: 446 YKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVA 505
Query: 189 DRLPHYMAPRTVV--FEDLPKTSTGKTQKYVLREKAK 223
++ + R V +++PK TGK +RE K
Sbjct: 506 SQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 10 HAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSD 69
YGLTET + + P+ + P + + VP ID+ T KS+ +
Sbjct: 340 QGYGLTET---TSAIIITPEGDDKPG------ASGKVVPLFKAKVIDLD---TKKSLGPN 387
Query: 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIII 128
+ GEV +G +M GY+ N +AT++ D GW +GD+G + + + DR K +I
Sbjct: 388 RR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK 445
Query: 129 SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR 188
G + E+ESVL HPS+ +A V G PD GE P A V L+ G +E+++Y
Sbjct: 446 YKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVA 505
Query: 189 DRLPHYMAPRTVV--FEDLPKTSTGKTQKYVLREKAK 223
++ + R V +++PK TGK +RE K
Sbjct: 506 SQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 10 HAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSD 69
YGLTET + + P+ + P + + VP ID+ T KS+ +
Sbjct: 340 QGYGLTET---TSAIIITPEGDDKPG------ASGKVVPLFKAKVIDLD---TKKSLGPN 387
Query: 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-GWFRSGDLGVRHPDGYIELKDRSKDIII 128
+ GEV +G +M GY+ N +AT++ D GW +GD+G + + + DR K +I
Sbjct: 388 RR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK 445
Query: 129 SGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR 188
G + E+ESVL HPS+ +A V G PD GE P A V L+ G +E+++Y
Sbjct: 446 YKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVA 505
Query: 189 DRLPHYMAPRTVV--FEDLPKTSTGKTQKYVLREKAK 223
++ + R V +++PK TGK +RE K
Sbjct: 506 SQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140
++ GYL +AT + GW+R+ D+ V P+G + + R D+IISGGENI E+E
Sbjct: 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIE 418
Query: 141 SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR-DRLPHYMAP-R 198
VL + P V E V+G D WG++ A V + G + + + +CR L + P R
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478
Query: 199 TVVFEDLPKTSTGKTQKYVLREKAKA 224
+ + LPK + K + L ++ +
Sbjct: 479 YFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140
++ GYL +AT + GW+R+ D+ V P+G + + R D+IISGGENI E+E
Sbjct: 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 141 SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR-DRLPHYMAP-R 198
VL + P V E V+G D WG++ A V + G + + + +CR L + P R
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478
Query: 199 TVVFEDLPKTSTGKTQKYVLREKAKA 224
+ + LPK + K + L ++ +
Sbjct: 479 YFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140
++ GYL +AT + GW+R+ D+ V P+G + + R D+IISGGENI E+E
Sbjct: 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 141 SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR-DRLPHYMAP-R 198
VL + P V E V+G D WG++ A V + G + + + +CR L + P R
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478
Query: 199 TVVFEDLPKTSTGKTQKYVLREKAKA 224
+ + LPK + K + L ++ +
Sbjct: 479 YFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140
++ GYL +AT + GW+R+ D+ V P+G + + R D+IISGGENI E+E
Sbjct: 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 141 SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR-DRLPHYMAP-R 198
VL + P V E V+G D WG++ A V + G + + + +CR L + P R
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478
Query: 199 TVVFEDLPKTSTGKTQKYVLREKAKA 224
+ + LPK + K + L ++ +
Sbjct: 479 YFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 81 NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140
++ GYL +AT + GW+R+ D+ V P+G + + R D+IISGGENI E+E
Sbjct: 359 DSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 141 SVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR-DRLPHYMAP-R 198
VL + P V E V+G D WG++ A V + G + + + +CR L + P R
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478
Query: 199 TVVFEDLPKTSTGKTQKYVLREKAKA 224
+ + LPK + K + L ++ +
Sbjct: 479 YFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 76 VMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENIS 135
++ ++ GYL +AT + GW+R+ D+ V P+G + + R D IISGGENI
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIH 413
Query: 136 TIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCR-DRLPHY 194
E+E VL + P V E V+G D WG++ A V + G + + + +CR L +
Sbjct: 414 PSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADF 473
Query: 195 MAP-RTVVFEDLPKTSTGKTQKYVLREKAKA 224
P R + + LPK + K + L ++ +
Sbjct: 474 KRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESV 142
+ +GY+ N T G ++ GD G++ DGY + R+ DII S G I EVE+
Sbjct: 415 IFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENA 474
Query: 143 LFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG-----EEIINYCRDRLPHYMAP 197
L HP+V+E AV+ PD GE AFV L +++ +E+ + + Y P
Sbjct: 475 LMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYP 534
Query: 198 RTVVFE-DLPKTSTGKTQKYVLREKAKAM 225
R + F +LPKT TGK Q+ LR+K M
Sbjct: 535 RKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESV 142
+ +GY+ N T G ++ GD G++ DGY + R+ DII S G I EVE+
Sbjct: 415 IFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENA 474
Query: 143 LFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG-----EEIINYCRDRLPHYMAP 197
L HP+V+E AV+ PD GE AFV L +++ +E+ + + Y P
Sbjct: 475 LMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYP 534
Query: 198 RTVVFE-DLPKTSTGKTQKYVLREKAKAM 225
R + F +LPKT TGK Q+ LR+K M
Sbjct: 535 RKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 2 EELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPV 61
E L L +G+ E G V + D + +I QG P DEI I D
Sbjct: 329 EVLNCKLQQVFGMAE----GLVNYTRLD------DSDEQIFTTQGRPISSDDEIKIVDE- 377
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELK 120
+ VP IG + RG GY ++ + FD ++ SGDL R PDG + +
Sbjct: 378 QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVV 435
Query: 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG 180
R KD I GGE I++ E+E ++ HP V+ AA+V D+ +GE CAF+ V+
Sbjct: 436 GRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFI------VSRN 489
Query: 181 EEIINYCRDR------LPHYMAPRTV-VFEDLPKTSTGKTQKYVLR 219
E+ R + Y P + + E LP T+ GK K LR
Sbjct: 490 PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLR 535
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 7/178 (3%)
Query: 54 EIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFD-GGWFRSGDLGVRH 112
E+ I DP T S+ + GE+ RG+ +M GYL N AT + D GW +GD+G+
Sbjct: 412 EMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469
Query: 113 PDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAF-VK 171
D + + DR K++I G ++ E+E++L HP + + AVV ++ GE P AF VK
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529
Query: 172 LKDGCVANGEEIINYCRDRLPHYMAPRTVVF-EDLPKTSTGKTQKYVLREK-AKAMGS 227
KD ++ +++ + ++ Y V F E +PK +GK + LR K A +GS
Sbjct: 530 SKDSELSE-DDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGS 586
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
Query: 87 YLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSH 146
Y K+ + T++ + G++ +GD+ DGY+ R+ DII + G + EVES L H
Sbjct: 438 YGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQH 497
Query: 147 PSVLEAAVVGRPDDHWGETPCAFVKL-KDGCVANG--EEIINYCRDRLPHYMAPRTVVF- 202
P+VLE A+ G PD G+ A + L KD ++ E+ ++ ++ Y PR + F
Sbjct: 498 PAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFV 557
Query: 203 EDLPKTSTGKTQKYVLREKAKA 224
+LPKT +GK ++ +R+K ++
Sbjct: 558 PELPKTISGKIRRVEIRDKDQS 579
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ R + P + + D LPKT +GK
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ R + P + + D LPKT +GK
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ R + P + + D LPKT +GK
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ R + P + + D LPKT +GK
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 101 GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160
G++ +GD + DGYI + R D++ G +ST E+E+ + P V E AVVG DD
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 161 HWGETPCAFVKLKDG---CVANGEE-------IINYCRDRLPHYMAPRTVVF-EDLPKTS 209
G+ AFV LK+ A +E ++ R + + AP+ ++ +DLPKT
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 210 TGKTQKYVLRE 220
+GK + +LR+
Sbjct: 623 SGKIMRRILRK 633
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ R + P + + D LPKT +G
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ + P + + D LPKT +GK
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 38 QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDA 97
Q + +G P G E ++ V S P A+T+ R KN+
Sbjct: 445 QPALVDNEGHPQEGATEGNL---VITDSWPGQARTLFGDHERFEQTYFSTFKNM------ 495
Query: 98 FDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157
+ SGD R DGY + R D++ G + T E+ES L +HP + EAAVVG
Sbjct: 496 -----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Query: 158 PDDHWGETPCAFVKLKDGCVANGE---EIINYCRDRLPHYMAPRTVVFED-LPKTSTGKT 213
P G+ A+V L G + E E+ N+ + P + + D LPKT +GK
Sbjct: 551 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKI 610
Query: 214 QKYVLREKA 222
+ +LR+ A
Sbjct: 611 MRRILRKIA 619
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Query: 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWF-------RSGDLGVRHPDGYIELKDRSK 124
+GE+ G V GY+ T++ F F R+GDL PDG IE R
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861
Query: 125 DIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEII 184
D + G I E+E L +P V +A VV D H L + + E++
Sbjct: 862 DQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA--DRHESGDASINAYLVNRTQLSAEDVK 919
Query: 185 NYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVL 218
+ + +LP YM P+T F D LP T+ GK K +L
Sbjct: 920 AHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGG--WFRSGDLGVRHPDGYI 117
P+ +GE+ G + +GY+ T + F GG +R+GDL R DG +
Sbjct: 403 PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVL 462
Query: 118 ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCA--FVKLKDG 175
E R+ D + G + EVE+ L HP+V +AAV+ + D G+ V +
Sbjct: 463 EYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ-DSRLGDKQLVAYVVAERAD 521
Query: 176 CVANGEEIINYCRDRLPHYMAP-RTVVFEDLPKTSTGKTQKYVL 218
+ E+ + + LP YM P V ++LP+T GK + L
Sbjct: 522 APPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 43/198 (21%)
Query: 52 LDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGG---------W 102
+ E+ I DP T+ +P D +GE+ + N+V GY + T+ AF G +
Sbjct: 380 IQEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 103 FRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162
R+GDLG H + + + R KD+II G+N +P +E ++ P H
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKN-----------HYPQDIEFSLXHSPLHHV 485
Query: 163 GETPCAFV-------KLKDGCVANGEEIINYCRDRL----------PHYMAPRTVVFEDL 205
AFV KL C + +D L H + T+V L
Sbjct: 486 LGKCAAFVIQEEHEYKLTVXCEVKNRFXDDVAQDNLFNEIFELVYENHQLEVHTIVLIPL 545
Query: 206 ---PKTSTGKTQKYVLRE 220
P T++GK ++ R+
Sbjct: 546 KAXPHTTSGKIRRNFCRK 563
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKD 121
GEV+ + + ++ Y +AT+DAFD GWFR+GD+G +GY+ +KD
Sbjct: 349 GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 17/156 (10%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF----------DGGWFRSGDLGVRHPDGYIELKDRS 123
GE+ G + GYL+ + T + F ++R+GDL PDG + R+
Sbjct: 378 GELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRA 437
Query: 124 KDIIISGGENISTIEVESVLFSHPSVLEAAVVGR---PDDHWGETPCAFVKLKDGCVANG 180
I G I ++E+ + H V++A V R P D CA+V ++G
Sbjct: 438 DLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDL--RLVCAYVA-REGSATTA 494
Query: 181 EEIINYCRDRLPHYMAP-RTVVFEDLPKTSTGKTQK 215
E+ N+ + LP YM P R + LP+T GK +
Sbjct: 495 RELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 89/229 (38%), Gaps = 24/229 (10%)
Query: 7 TLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSV 66
T +AYG TET T+C W + +E G P + + + +KSV
Sbjct: 318 TYINAYGPTET----TICA--TTW--VATKETIGHSVPIGAPIQNTQIYIVDENLQLKSV 369
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWF-------RSGDLGVRHPDGYIEL 119
GE+ G + GY K + T F F ++GD DG IE
Sbjct: 370 GEA----GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEY 425
Query: 120 KDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCA-FVKLKDGCVA 178
R + + G + EVES+L H + E AV D CA FV K +
Sbjct: 426 LGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL- 484
Query: 179 NGEEIINYCRDRLPHYMAPRTVV-FEDLPKTSTGKTQKYVLREKAKAMG 226
E++ + + LP YM P + + +P TS GK + L E G
Sbjct: 485 --EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFG 531
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 35/167 (20%)
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDI 126
P + +G + G ++ +GY + + + GW +GDLG DGY+ + R KD+
Sbjct: 404 PVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLYVTGRIKDL 462
Query: 127 IISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVK------LKDGCVANG 180
II G NI ++E + P + H G+ AFV L+ C +
Sbjct: 463 IIIRGRNIWPQDIEYIAEQEPEI-----------HSGDA-IAFVTAQEKIILQIQCRISD 510
Query: 181 EEIINYCRDRLPHYMAPR-------TVVFE-----DLPKTSTGKTQK 215
EE R +L H +A R T + +P+TS+GK +
Sbjct: 511 EER----RGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPAR 553
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF----DGGWFRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE++ G V GYL N + T +AF + +GD+G D + R I
Sbjct: 349 GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY 408
Query: 130 GGENISTIEVESVLFSHPSVLEAAVVGRPD-DHWGETPCAFVKLKDGC-------VANGE 181
G I +V L P V A V R + +H + A++ +KDG + +
Sbjct: 409 AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTK 468
Query: 182 EIINYCRDRLPHYMAPRTVVFED-LPKTSTGK 212
I +D + YM P ++ D LP T GK
Sbjct: 469 AIKASVKDHMMSYMMPSKFLYRDSLPLTPNGK 500
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF---DGGW-FRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE++ G +V GYL + T+ AF +G W +R+GD G DG I + R I
Sbjct: 345 GEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKL 403
Query: 130 GGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRD 189
G + E+E + V A V+ + E A + ++ ++ + +
Sbjct: 404 HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKK 463
Query: 190 R----LPHYMAPRTVVFED-LPKTSTGKTQK 215
LP YM PR +++D + T+ GK +
Sbjct: 464 ELAASLPAYMIPRKFIYQDHIQMTANGKIDR 494
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF---DGG-WFRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE++ G +V GYL + + T+ AF DG +++GD G +G + R I
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 130 GGENISTIEVESVLFSHPSVLEAAVV-----GRPDDHW------GETPCAFVKLKDGCVA 178
G + E+E L + S +E AV+ G D+ GE +F K A
Sbjct: 405 HGYRMELEEIEHHLRAC-SYVEGAVIVPIKKGEKYDYLLAVVVPGEH--SFEKEFKLTSA 461
Query: 179 NGEEIINYCRDRLPHYMAPRTVVFE-DLPKTSTGKTQKYVLREKAKAM 225
+E+ +RLP+YM PR +++ +P T GK + L + A+
Sbjct: 462 IKKEL----NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 74 GEVMFRGNTVMNGYLKNLKATQDAF---DGG-WFRSGDLGVRHPDGYIELKDRSKDIIIS 129
GE++ G +V GYL + + T+ AF DG +++GD G +G + R I
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 130 GGENISTIEVESVLFSHPSVLEAAVV-----GRPDDHW------GETPCAFVKLKDGCVA 178
G + E+E L + S +E AV+ G D+ GE +F K A
Sbjct: 405 HGYRMELEEIEHHLRAC-SYVEGAVIVPIKKGEKYDYLLAVVVPGEH--SFEKEFKLTSA 461
Query: 179 NGEEIINYCRDRLPHYMAPRTVVFE-DLPKTSTGKTQKYVLREKAKAM 225
+E+ +RLP+YM PR +++ +P T GK + L + A+
Sbjct: 462 IKKEL----NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 120 KDRSKDIIISGG-----ENISTIEVESVLFSHPSVLEA-------AVVGRPDDHW----G 163
+DR +D+ + T +VE +F+HP E AV+ +P
Sbjct: 47 QDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIE 106
Query: 164 ETPCAFVKLKDGCVANGEEIINYCRD 189
ETPC F+ D V E+++N C++
Sbjct: 107 ETPCHFISSLDELVELNEKLLN-CQE 131
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 120 KDRSKDIIISGG-----ENISTIEVESVLFSHPSVLEA-------AVVGRPDDHW----G 163
+DR +D+ + T +VE +F+HP E AV+ +P
Sbjct: 47 QDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIE 106
Query: 164 ETPCAFVKLKDGCVANGEEIINYCRD 189
ETPC F+ D V E+++N C++
Sbjct: 107 ETPCHFISSLDELVELNEKLLN-CQE 131
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCA------FVKLKDGCVANGEEIINYCRDRL 191
E+E P L+ + DH G +P F + DG G ++ +YCRDRL
Sbjct: 30 EMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDG--HGGHKVADYCRDRL 87
Query: 192 PHYMAPRTVVFED-LPKTSTGKTQK 215
+A +D L K +TG+ ++
Sbjct: 88 HFALAEEIERIKDELSKRNTGEGRQ 112
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 48/237 (20%)
Query: 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEI--DIKDPV 61
+G YGL+E GPG C ++ + G P + D +I DPV
Sbjct: 236 VGIDALDIYGLSEVMGPGVAC--------------ECVETKDG-PVIWEDHFYPEIIDPV 280
Query: 62 TMKSVPSDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDG------ 115
T + +P ++ GE++F T++A +R+ DL P
Sbjct: 281 TGEVLPDGSQ--GELVF------------TSLTKEAMPVIRYRTRDLTALLPPTARAMRR 326
Query: 116 YIELKDRSKDIIISGGENISTIEVESVLFSHPSVL-EAAVVGRPDDHWGETPCAFVKLKD 174
++ RS D++I G N+ ++E ++ + P + + + D H A V+L+
Sbjct: 327 LAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA-VELRS 385
Query: 175 ---GCVANGE------EIINYCRDRLPHYMAPRTVVFEDLPKTSTGKTQKYVLREKA 222
V +GE E+ + + + + +P T+TGK ++ + R +A
Sbjct: 386 EAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRRQA 442
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCA------FVKLKDGCVANGEEIINYCRDRL 191
E+E P L+ + DH G +P F + DG G ++ +YCRDRL
Sbjct: 27 EMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDG--HGGHKVADYCRDRL 84
Query: 192 PHYMAPRTVVFED-LPKTSTGKTQK 215
+A +D L K +TG+ ++
Sbjct: 85 HFALAEEIERIKDELCKRNTGEGRQ 109
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 72 TIGEVMFRGNTVMNGYLKNLKATQDAF------------DGGWFRSGDLG 109
T+GE+ G+ V NGY + ++ F +G W R+GD G
Sbjct: 419 TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCA------FVKLKDGCVANGEEIINYCRDRL 191
E+E P L+ + DH G +P F + DG G ++ +YCRDRL
Sbjct: 31 EMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDG--HGGHKVADYCRDRL 88
Query: 192 PHYMAPRTVVFED-LPKTSTGKTQK 215
+A +D L K +TG+ ++
Sbjct: 89 HFALAEEIERIKDELCKRNTGEGRQ 113
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCA------FVKLKDGCVANGEEIINYCRDRL 191
E+E P L+ + DH G +P F + DG G ++ +YCRDRL
Sbjct: 33 EMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDG--HGGHKVADYCRDRL 90
Query: 192 PHYMAPRTVVFED-LPKTSTGKTQK 215
+A +D L K +TG+ ++
Sbjct: 91 HFALAEEIERIKDELCKRNTGEGRQ 115
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 74 GEVMFRGNTVMNGYLK--NLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGG 131
GE++ G+ V NGYL + K D +R+GD+ D I R + + G
Sbjct: 375 GELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRG 434
Query: 132 ENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKL--KDGCVANGE-------- 181
+ + EV V+ S S + VV +H G + V G GE
Sbjct: 435 QRLELGEVSEVIRSL-SPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENY 493
Query: 182 -EIIN----YCRDRLPHYMAPRTVV 201
EI N C LP Y P ++
Sbjct: 494 KEINNSLRQACEQTLPAYXVPDFII 518
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCA------FVKLKDGCVANGEEIINYCRDRL 191
E+E P L+ + DH G +P F + DG G ++ +YCRDRL
Sbjct: 40 EMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDG--HGGHKVADYCRDRL 97
Query: 192 PHYMAPRTVVFED-LPKTSTGKTQK 215
+A +D L K +TG+ ++
Sbjct: 98 HFALAEEIERIKDELCKRNTGEGRQ 122
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 138 EVESVLFSHPSVLEAAVVGRPDDHWGETPCA------FVKLKDGCVANGEEIINYCRDRL 191
E+E P L+ + DH G +P F + DG G ++ +YCRDRL
Sbjct: 16 EMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDG--HGGHKVADYCRDRL 73
Query: 192 PHYMAPRTVVFED-LPKTSTGKTQK 215
+A +D L K +TG+ ++
Sbjct: 74 HFALAEEIERIKDELCKRNTGEGRQ 98
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 72 TIGEVMFRGNTVMNGYLKNLKATQDAF------------DGGWFRSGDLG 109
T+GE+ G+ V NGY + ++ F +G W R+GD G
Sbjct: 419 TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 67 PSDAKTIGEVMFRGNTVMNGYLKNLKATQDAF-------DGG--WFRSGDLGVRHPDGYI 117
P+ +GE+ G + +GY+ T + F GG +R+GDL R DG +
Sbjct: 403 PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVL 462
Query: 118 ELKDRS 123
E R+
Sbjct: 463 EYVGRA 468
>pdb|1Y0G|A Chain A, Crystal Structure Of The Escherichia Coli Ycei Protein,
Structural Genomics
pdb|1Y0G|B Chain B, Crystal Structure Of The Escherichia Coli Ycei Protein,
Structural Genomics
pdb|1Y0G|C Chain C, Crystal Structure Of The Escherichia Coli Ycei Protein,
Structural Genomics
pdb|1Y0G|D Chain D, Crystal Structure Of The Escherichia Coli Ycei Protein,
Structural Genomics
Length = 191
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 145 SHPSVLEAAVVGRPDDHWGETPCAF-----VKLKD 174
+ P LEA ++G+ DD WG F +KLKD
Sbjct: 131 TKPVTLEAKLIGQGDDPWGGKRAGFEAEGKIKLKD 165
>pdb|2JMM|A Chain A, Nmr Solution Structure Of A Minimal Transmembrane Beta-
Barrel Platform Protein
Length = 156
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 29 DW-NSLPREEQA-KIKARQGVPHLGLDEIDI 57
DW +PR+ Q ++ A+ G P LG D++DI
Sbjct: 45 DWLGRMPRKAQGVQLTAKLGYPKLGTDDLDI 75
>pdb|3QUV|A Chain A, Crystal Structure Of A Trna-Guanine-N1-Methyltransferase
From Mycobacterium Abscessus
pdb|3QUV|B Chain B, Crystal Structure Of A Trna-Guanine-N1-Methyltransferase
From Mycobacterium Abscessus
Length = 246
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 125 DIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161
D +++GGE + + +E+VL P VL A+ + D H
Sbjct: 139 DYVLNGGEAAALVIIEAVLRLVPGVLGNALSAQEDSH 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,899,498
Number of Sequences: 62578
Number of extensions: 352097
Number of successful extensions: 994
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 77
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)