Query 046870
Match_columns 236
No_of_seqs 134 out of 1440
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 8.7E-44 3E-48 312.4 18.3 209 3-225 291-501 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.3E-43 4.6E-48 313.4 18.4 211 5-224 323-535 (536)
3 3g7s_A Long-chain-fatty-acid-- 100.0 4.5E-43 1.5E-47 310.8 16.3 211 6-229 329-547 (549)
4 3etc_A AMP-binding protein; ad 100.0 1E-42 3.6E-47 310.3 18.0 207 3-224 364-579 (580)
5 1v25_A Long-chain-fatty-acid-C 100.0 2.9E-43 9.8E-48 311.6 11.9 220 3-225 315-537 (541)
6 3e7w_A D-alanine--poly(phospho 100.0 1.4E-41 4.8E-46 298.8 20.9 216 5-231 286-510 (511)
7 2d1s_A Luciferase, luciferin 4 100.0 7.8E-42 2.7E-46 302.9 18.4 210 3-226 332-545 (548)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1E-41 3.5E-46 301.5 18.3 210 3-226 321-533 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.3E-41 4.5E-46 298.6 18.7 203 3-223 295-503 (504)
10 3r44_A Fatty acyl COA syntheta 100.0 2.3E-41 7.7E-46 298.0 18.6 207 4-225 307-514 (517)
11 3nyq_A Malonyl-COA ligase; A/B 100.0 1.7E-41 5.9E-46 298.0 17.0 205 3-220 295-504 (505)
12 3ivr_A Putative long-chain-fat 100.0 9.7E-43 3.3E-47 306.1 7.5 209 5-229 295-506 (509)
13 3fce_A D-alanine--poly(phospho 100.0 3.5E-41 1.2E-45 296.3 17.3 216 5-231 287-511 (512)
14 3l8c_A D-alanine--poly(phospho 100.0 1.3E-41 4.4E-46 299.6 14.6 214 5-228 290-516 (521)
15 1pg4_A Acetyl-COA synthetase; 100.0 9.9E-41 3.4E-45 301.2 19.8 210 3-225 401-622 (652)
16 3c5e_A Acyl-coenzyme A synthet 100.0 2.4E-41 8.4E-46 301.0 15.2 208 3-225 345-563 (570)
17 3rix_A Luciferase, luciferin 4 100.0 3.9E-42 1.3E-46 304.9 7.4 213 3-229 330-546 (550)
18 1amu_A GRSA, gramicidin synthe 100.0 2.1E-40 7.2E-45 294.5 17.1 203 6-222 317-527 (563)
19 3rg2_A Enterobactin synthase c 100.0 5.4E-40 1.9E-44 294.8 18.3 208 3-226 325-536 (617)
20 3o83_A Peptide arylation enzym 100.0 1.1E-41 3.8E-46 301.6 7.2 209 3-226 330-542 (544)
21 2v7b_A Benzoate-coenzyme A lig 100.0 4.9E-40 1.7E-44 290.1 17.6 203 3-221 323-529 (529)
22 4gr5_A Non-ribosomal peptide s 100.0 4.5E-41 1.5E-45 299.2 8.3 207 5-222 352-569 (570)
23 1ry2_A Acetyl-coenzyme A synth 100.0 1.3E-39 4.4E-44 294.4 17.3 212 3-225 407-638 (663)
24 3ipl_A 2-succinylbenzoate--COA 100.0 1.1E-39 3.6E-44 286.1 15.7 202 3-225 296-498 (501)
25 3tsy_A Fusion protein 4-coumar 100.0 1.3E-40 4.4E-45 312.5 8.3 213 5-226 370-584 (979)
26 3ite_A SIDN siderophore synthe 100.0 4.9E-40 1.7E-44 292.0 9.6 212 3-227 317-546 (562)
27 4dg8_A PA1221; ANL superfamily 100.0 5.3E-39 1.8E-43 288.3 15.5 204 4-225 301-514 (620)
28 2vsq_A Surfactin synthetase su 100.0 2.3E-37 8E-42 297.4 17.6 204 6-222 747-958 (1304)
29 3gqw_A Fatty acid AMP ligase; 100.0 3.6E-37 1.2E-41 274.0 12.8 217 5-228 330-567 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 7.3E-37 2.5E-41 272.9 9.7 214 6-226 321-569 (590)
31 4gs5_A Acyl-COA synthetase (AM 100.0 1.2E-33 4E-38 238.1 11.3 183 3-227 170-357 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 1.9E-31 6.4E-36 230.0 11.3 184 3-216 229-429 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 4.6E-31 1.6E-35 228.1 10.0 188 3-217 235-437 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 6.6E-31 2.3E-35 226.7 6.9 187 3-217 233-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 99.8 6.5E-21 2.2E-25 165.8 5.0 112 6-122 343-480 (480)
36 3lax_A Phenylacetate-coenzyme 99.6 2.4E-15 8.1E-20 104.9 7.3 94 121-215 1-101 (109)
37 3gxs_A Phenylacetate-coenzyme 99.6 1.9E-15 6.5E-20 105.4 6.5 94 121-216 1-102 (109)
38 3hgu_A EHPF; phenazine, antibi 99.2 3.3E-11 1.1E-15 101.2 6.8 99 2-132 254-368 (369)
39 4b2g_A GH3-1 auxin conjugating 98.3 2.7E-06 9.2E-11 75.2 9.2 59 71-145 396-458 (609)
40 4epl_A Jasmonic acid-amido syn 98.2 1.7E-05 5.8E-10 69.9 12.4 87 71-174 391-489 (581)
41 4eql_A 4-substituted benzoates 98.2 2.7E-06 9.3E-11 75.0 7.3 62 70-147 383-448 (581)
42 2cqa_A RUVB-like 2; TIP48, TIP 21.7 1.7E+02 0.0058 18.9 5.8 52 72-124 33-85 (95)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.7e-44 Score=312.40 Aligned_cols=209 Identities=32% Similarity=0.562 Sum_probs=188.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|.++++.||+||++...+... .. .....++|+|++++ +++|+|++++++++.| +.|||+|+|++
T Consensus 291 ~~~~~~~~~YG~TE~~~~~~~~~-~~----------~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~ 356 (503)
T 4fuq_A 291 KTGHAVLERYGMTETNMNTSNPY-DG----------DRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPN 356 (503)
T ss_dssp HHSCCEEECCEETTTEECBCCCS-SS----------CCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTT
T ss_pred HhCCCccceEcccccCcccccCC-CC----------CCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCc
Confidence 46889999999999976543221 10 12235799999999 9999997699999988 89999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.|. +|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 357 v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 436 (503)
T 4fuq_A 357 VFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD 436 (503)
T ss_dssp SCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred hhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchh
Confidence 99999999999999986 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.++++|+..++...+..++.++++++|+.|++|..+++++ ||+|++||++|++|+++++++
T Consensus 437 ~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 437 FGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred cCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 8889999999988877889999999999999999999998777 999999999999999998764
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.3e-43 Score=313.41 Aligned_cols=211 Identities=31% Similarity=0.498 Sum_probs=186.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++++++.+....... ......++|.|++++ +++|+|++++++++.| +.|||+|+|+.++
T Consensus 323 ~~~l~~~YG~TE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~ 393 (536)
T 3ni2_A 323 QARLGQGYGMTEAGPVLAMCLAFAKEP------FDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIM 393 (536)
T ss_dssp TSEEEEEEECGGGSSEEEECGGGSSSC------CCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSC
T ss_pred CCCccccccccccchhhhcccccCCcc------ccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccc
Confidence 789999999999987655442211100 012345899999999 9999997789999988 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..+
T Consensus 394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99999999999988 58999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+.++++|+..+....+.+++.++++++|+.|++|..+++++ ||+|++||++|++|++++.+
T Consensus 474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999988777888999999999999999999998877 99999999999999998764
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.5e-43 Score=310.84 Aligned_cols=211 Identities=31% Similarity=0.562 Sum_probs=147.4
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
+++++.||+||++.+++..... ......++|.|++++ +++|+|++++++++.| +.|||+|+|++++.
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~ 395 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFK 395 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCS
T ss_pred ccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhh
Confidence 8999999999998765543321 113456899999999 9999996699999988 88999999999999
Q ss_pred hhcCCchhhhccc---CCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 86 GYLKNLKATQDAF---DGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 86 ~y~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
|||++|+.+.+.| .+| ||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 396 GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 396 GYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDE 475 (549)
T ss_dssp EETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC-
T ss_pred hhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEcc
Confidence 9999999999988 677 99999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 161 HWGETPCAFVKLKDG--CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
..++.++++|++.++ ...+.+++.++++++|+.|++|..+.+++ ||+|++||++|++|+++..+..+.+
T Consensus 476 ~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 476 EAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp -----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-----------------------
T ss_pred ccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 888899999998876 45788999999999999999999887776 9999999999999999998776544
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-42 Score=310.31 Aligned_cols=207 Identities=28% Similarity=0.470 Sum_probs=166.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEec--
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRG-- 80 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~-- 80 (236)
.+|+++++.||+||++..++...... ....++|+|++++ +++|+|+ +|++++.| +.|||+|++
T Consensus 364 ~~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v~~~~ 428 (580)
T 3etc_A 364 FTGIKLMEGFGQTETVVTIATFPWME-----------PKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVINTME 428 (580)
T ss_dssp HHSCCCEEEECCTTSSCCEECCTTSC-----------CCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEECTT
T ss_pred HhCCeEecccccccccceeecCCCCC-----------CCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEEecCC
Confidence 46899999999999976554432211 2345899999999 9999998 89999988 889999997
Q ss_pred ---CCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 81 ---NTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 81 ---~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
+.++.||+++|+.|.+.|.+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.
T Consensus 429 g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~ 508 (580)
T 3etc_A 429 GKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGV 508 (580)
T ss_dssp CCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEE
T ss_pred CCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHh
Q 046870 158 PDDHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKA 224 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~ 224 (236)
+++..++.+.++|++.++...+ .++|.+++++.+++|++|+.+.+++ ||+|++|||+|++|++++++
T Consensus 509 ~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 509 PDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred eccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 9888889999999998765444 3689999999999999999998776 99999999999999998865
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.9e-43 Score=311.63 Aligned_cols=220 Identities=38% Similarity=0.618 Sum_probs=153.2
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++++++.+.........+.........++|+|++++ +++|+|+ ++++++.+.++.|||+|+|+.
T Consensus 315 ~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g~~ 392 (541)
T 1v25_A 315 RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPW 392 (541)
T ss_dssp HTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTT
T ss_pred HhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeCcc
Confidence 46899999999999987655443221111222222234567899999999 9999997 889998644468999999999
Q ss_pred cchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.|. +|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 393 v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 472 (541)
T 1v25_A 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPK 472 (541)
T ss_dssp SBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSS
T ss_pred hhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCC
Confidence 99999999999999986 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
.++.++++|++. +...+..++.+++.+ .|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 473 ~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 473 WQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp SSEEEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred cCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 888899988876 334566789999998 899999999998776 999999999999999987654
No 6
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-41 Score=298.85 Aligned_cols=216 Identities=23% Similarity=0.265 Sum_probs=186.5
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++..++.+.... .........++|+|++++ +++|+|+ +|++++.| +.|||+|+|++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccC
Confidence 789999999999987766543211 011112345799999999 9999998 89999988 8899999999999
Q ss_pred hhhcCCchhhhccc--CCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAF--DGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~--~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.|||++|+.|.+.| .+| ||+|||+++++ +|+|+++||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 356 ~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 434 (511)
T 3e7w_A 356 RGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPN 434 (511)
T ss_dssp CCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSS
T ss_pred hhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence 99999999999887 344 79999999995 99999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcccc
Q 046870 161 HWGETPCAFVKLKDGCVANG----EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKK 231 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~~ 231 (236)
..++.+++++++.+...... +++.++++++|+.|++|..+++++ ||+|++|||+|++|++++++.....++
T Consensus 435 ~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~~ 510 (511)
T 3e7w_A 435 GTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHHHH 510 (511)
T ss_dssp SSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC--
T ss_pred CCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcccccC
Confidence 78889999999887644443 678899999999999999998877 999999999999999999998877664
No 7
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.8e-42 Score=302.87 Aligned_cols=210 Identities=31% Similarity=0.441 Sum_probs=187.3
Q ss_pred cc-cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 EL-GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.| ++++++.||+||++.+++..... .....++|+|++++ +++|+|++++++++.| +.|||+++|+
T Consensus 332 ~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~ 397 (548)
T 2d1s_A 332 RFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGP 397 (548)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred HcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCH
Confidence 35 57899999999998655442111 02345899999999 9999996689999887 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.++.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 398 ~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~ 477 (548)
T 2d1s_A 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDP 477 (548)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred HHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcC
Confidence 99999999999999988 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-EEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPR-TVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++|++.++...+.+++.++++++|+.|++|. .+.+++ ||+|++||++|++|++++.+..
T Consensus 478 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 478 VAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred CCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 88888999999887766788999999999999999999 888777 9999999999999999987643
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1e-41 Score=301.52 Aligned_cols=210 Identities=32% Similarity=0.551 Sum_probs=183.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++. .+.. .. ........++|+|+++..+++|+|+ ++++++.| +.|||+|+|+.
T Consensus 321 ~~~~~~~~~YG~TE~~~-~~~~-~~--------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~ 387 (539)
T 1mdb_A 321 VFGCTLQQVFGMAEGLV-NYTR-LD--------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPY 387 (539)
T ss_dssp HTCSEEEEEEECTTSCE-EECC-TT--------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTT
T ss_pred HhCCcEEEEEcCCCCcc-cccC-CC--------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCcc
Confidence 47899999999999642 2211 10 0011234689999987647999997 89999988 89999999999
Q ss_pred cchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCC
Q 046870 83 VMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDH 161 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 161 (236)
++.|||++|+.|.+.| .+|||+|||+|+++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++.
T Consensus 388 v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 467 (539)
T 1mdb_A 388 TIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF 467 (539)
T ss_dssp SCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred cchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccc
Confidence 9999999999999988 599999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 162 WGETPCAFVKLKDGCVANGEEIINYCRDR-LPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
.++.++++|++.. ...+.+++.++++++ |+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 468 ~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 468 LGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp TEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred cCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 8888999998873 346789999999997 99999999998877 9999999999999999987643
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.3e-41 Score=298.56 Aligned_cols=203 Identities=29% Similarity=0.496 Sum_probs=181.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCC---cccCCCCCceeEEEEe
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTM---KSVPSDAKTIGEVMFR 79 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~---~~~~~~~~~~Gel~v~ 79 (236)
.++.++++.||+||++. .+. ... ....++|.|.+++ +++|+|. ++ ++++.| +.|||+++
T Consensus 295 ~~~~~~~~~YG~TE~~~-~~~-~~~------------~~~~~~g~p~~~~-~~~i~~~-~~~~~~~~~~g--~~GEl~v~ 356 (504)
T 1t5h_X 295 HLPGEKVNIYGTTEAMN-SLY-MRQ------------PKTGTEMAPGFFS-EVRIVRI-GGGVDEIVANG--EEGELIVA 356 (504)
T ss_dssp HCCSEEEEEEEETTTEE-EEE-EES------------CSSSSEEBCCTTC-CEEEECT-TSCTTCBCCTT--CCEEEEEE
T ss_pred hcCcceeeeeccccccc-ccc-ccC------------CCCCccccCCCCC-ceeEEec-cCCCCCcCCCC--CcceEEEe
Confidence 46889999999999932 222 111 1224789999999 9999997 55 788877 88999999
Q ss_pred -cCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 80 -GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 80 -~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
++.++.||+++|+.|.+.|.+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+
T Consensus 357 gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 436 (504)
T 1t5h_X 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436 (504)
T ss_dssp CCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEee
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~ 223 (236)
++..++.++++|++.++...+.+++.+++++ +|+.|++|+.+++++ ||+|++||++|++|++++.
T Consensus 437 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 437 DQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8888899999999987766788999999998 899999999998877 9999999999999999874
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.3e-41 Score=297.98 Aligned_cols=207 Identities=37% Similarity=0.678 Sum_probs=184.4
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCc
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTV 83 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 83 (236)
.|+++++.||+||+++.++...... ......++|+|.+++ ++.|+|+ ++.+++.+ .|||+|+|+.+
T Consensus 307 ~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v 372 (517)
T 3r44_A 307 KNIEVVQGYALTESCGGGTLLLSED---------ALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDIL 372 (517)
T ss_dssp TTCEEEEEEECGGGTTCEEEECGGG---------TTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTS
T ss_pred cCCcEEEeecccccccceeecCCcc---------ccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcch
Confidence 3789999999999987665543221 123346899999999 9999997 88888775 59999999999
Q ss_pred chhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 84 MNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 84 ~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
+.|||++|+.|.+.|.+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..+
T Consensus 373 ~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 373 LKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp CSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred hhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988878
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+.+++++ ..+....+.+++.++++++|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 453 ~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 453 EIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp EEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred ceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 8888887 555556788999999999999999999998877 999999999999999998764
No 11
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.7e-41 Score=297.96 Aligned_cols=205 Identities=34% Similarity=0.557 Sum_probs=164.1
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCC-CCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPS-DAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~-~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||++..++..... .....++|+|++++ +++|+|+ +|++++. +.|++|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecC
Confidence 4688999999999997544332111 11235799999999 9999998 8888876 3348899999999
Q ss_pred CcchhhcCCchhhhcccC-CCeEeccceEEEecCCeEEEEccC-CCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccC
Q 046870 82 TVMNGYLKNLKATQDAFD-GGWFRSGDLGVRHPDGYIELKDRS-KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPD 159 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 159 (236)
+++.|||++|+.|.+.|. +|||+|||+++++++|+|+|+||+ ||+||++|++|+|.+||+.|.++|.|.+++|++.++
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~ 441 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPD 441 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred chhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence 999999999999999984 899999999999999999999997 699999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCC-CCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHH
Q 046870 160 DHWGETPCAFVKLKD-GCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLRE 220 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~-~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~ 220 (236)
+..++.++++|++.+ ....+.+++.++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 442 ~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 442 PDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 888899999999875 345678999999999999999999998877 9999999999999985
No 12
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9.7e-43 Score=306.05 Aligned_cols=209 Identities=31% Similarity=0.577 Sum_probs=91.9
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
|+++++.||+||++++++.+.... ...++|+|++++ +++|+|+ ++++++.| +.|||+|+|++++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCcc
Confidence 889999999999987655543221 123489999999 9999998 79999988 8999999999999
Q ss_pred hhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccC--CCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 85 NGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRS--KDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
.|||++|+.+.+.|.+|||+|||+++++++|+++++||. +|+||++|++|+|.+||+.|.++|.|.+++|++.+++..
T Consensus 359 ~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~ 438 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQW 438 (509)
T ss_dssp CEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred ccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
++.+++++++.++...+..++.+++++.|+.|++|..+++++ ||+|++||++|++|++++++.....
T Consensus 439 ~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 439 SEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp --------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 889999999887766778899999999999999999998777 9999999999999999998776443
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.5e-41 Score=296.35 Aligned_cols=216 Identities=22% Similarity=0.244 Sum_probs=182.8
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||+++.++..... ..........++|.|.+++ ++.|+|+ +|++++.| +.|||+|+|++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVT------EEVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECC------HHHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEec------cccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccC
Confidence 78999999999998776554321 1111223456799999999 9999997 89999988 8899999999999
Q ss_pred hhhcCCchhhhcccC----CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAFD----GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.|||++|+.+.+.|. ++||+|||++++ ++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999873 569999999999 699999999999999999999999999999999999999999999887
Q ss_pred CCCceeEEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCcccc
Q 046870 161 HWGETPCAFVKLKDGCVANG----EEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSISKK 231 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~~~ 231 (236)
..++.+++++++.+....+. +++.++++++|+.|++|..+++++ ||+|++||++|++|++++++.++..++
T Consensus 436 ~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~~ 511 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHHH 511 (512)
T ss_dssp TEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-------
T ss_pred CCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccccC
Confidence 77788999998876543332 578899999999999999998877 999999999999999999998876554
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.3e-41 Score=299.62 Aligned_cols=214 Identities=25% Similarity=0.317 Sum_probs=174.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
|+++++.||+||++++++.+.... .........++|+|++++ +++|+|+ +|++++.+ +.|||+|+|++++
T Consensus 290 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~ 359 (521)
T 3l8c_A 290 SAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAVS 359 (521)
T ss_dssp TCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTSC
T ss_pred CceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEecccccC
Confidence 789999999999987766543211 111122345799999999 9999997 89999988 8899999999999
Q ss_pred hhhcCCchhhhccc----CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 85 NGYLKNLKATQDAF----DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 85 ~~y~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.|||++|+.+.+.| .++||+|||+|+++++|+|+++||.||+||++|++|+|.+||+.|.++|.|.++++++.++.
T Consensus 360 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 360 KGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNK 439 (521)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSS
T ss_pred hhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecC
Confidence 99999999999887 36799999999999999999999999999999999999999999999999999999988754
Q ss_pred -CCCceeEEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCCc
Q 046870 161 -HWGETPCAFVKLKDGCVAN-------GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGSI 228 (236)
Q Consensus 161 -~~~~~~~~~v~~~~~~~~~-------~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~ 228 (236)
..++.++++|++.++.... .+++.++++++|+.|++|..+.+++ ||+|++||++|++|++++++....
T Consensus 440 ~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 440 EHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGH 516 (521)
T ss_dssp SCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-----
T ss_pred CCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcc
Confidence 3457889999988763321 4678999999999999999998877 999999999999999998776543
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9.9e-41 Score=301.24 Aligned_cols=210 Identities=25% Similarity=0.358 Sum_probs=184.7
Q ss_pred ccc---CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEe
Q 046870 3 ELG---FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFR 79 (236)
Q Consensus 3 ~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~ 79 (236)
.+| +++++.||+||++++++...... ......++|+|++++ +++|+|+ +|++++.+ +.|||+|+
T Consensus 401 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~-~g~~v~~g--~~GEl~i~ 467 (652)
T 1pg4_A 401 KIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLVIT 467 (652)
T ss_dssp HTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEEEC
T ss_pred HhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECC-CCCCcCCC--ceEEEEEc
Confidence 356 89999999999987655432111 012346899999999 9999998 89999887 89999999
Q ss_pred c--CCcchhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEE
Q 046870 80 G--NTVMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAV 154 (236)
Q Consensus 80 ~--~~~~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 154 (236)
+ |++++|||++|+.+...+ .+|||+|||+++++++|+|+|+||.||+||++|++|++.+||+.|.+||.|.+++|
T Consensus 468 g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V 547 (652)
T 1pg4_A 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547 (652)
T ss_dssp SCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred cCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 789999999999887764 38899999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 155 VGRPDDHWGETPCAFVKLKDGCVAN---GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.+++..++.++++|++.++...+ .++|+++++++|++|++|..+++++ ||+|++|||+|++|++++.+.
T Consensus 548 vg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 548 VGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 9998887888999999998765444 4789999999999999999998877 999999999999999999875
No 16
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.4e-41 Score=300.96 Aligned_cols=208 Identities=32% Similarity=0.466 Sum_probs=181.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEe---
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFR--- 79 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~--- 79 (236)
.+|+++++.||+||++..++..... .....++|+|++++ +++|+|+ +|++++.| +.|||+|+
T Consensus 345 ~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~v~~~~ 409 (570)
T 3c5e_A 345 QTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIGIRVKP 409 (570)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEEEECSS
T ss_pred HhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeEEeccC
Confidence 4689999999999997543322110 01235799999999 9999997 89999988 88999999
Q ss_pred --cCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEec
Q 046870 80 --GNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGR 157 (236)
Q Consensus 80 --~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 157 (236)
|++++.|||++|+.|.+.|.++||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.
T Consensus 410 ~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~ 489 (570)
T 3c5e_A 410 IRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISS 489 (570)
T ss_dssp BCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred CCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEee
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCC--C---CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 158 PDDHWGETPCAFVKLKDGCV--A---NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~--~---~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
+++..++.++++|++.++.. . ..++|.+++++.|+.|++|..+.+++ ||+|++||++|++|++++...
T Consensus 490 ~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 490 PDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp EETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred eCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 88877888999998876431 1 24678899999999999999998777 999999999999999988654
No 17
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.9e-42 Score=304.86 Aligned_cols=213 Identities=31% Similarity=0.449 Sum_probs=89.5
Q ss_pred cccCe-eeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFT-LTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~-i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.++.. +++.||+||+++.++...... ....++|+|++++ +++|+|++++++++.| +.|||+|+|+
T Consensus 330 ~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~ 395 (550)
T 3rix_A 330 RFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGP 395 (550)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECCTTC-----------CCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred HcCCCccccccCcCccccceecCCCCC-----------CCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCC
Confidence 46654 899999999987655433211 1335799999999 9999997789999888 8899999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.|||++|+.|...| .+|||+|||+++++++|+|+++||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 396 ~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDD 475 (550)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------------------
T ss_pred CcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecC
Confidence 99999999999999988 68999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-EEEEcc-cCCCCCCcccHHHHHHHHHhcCCcc
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPR-TVVFED-LPKTSTGKTQKYVLREKAKAMGSIS 229 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~~~ 229 (236)
..++.++++|++.++...+.+++.+++++++++++.|. .+++++ ||+|++||++|++|++++.+.....
T Consensus 476 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 546 (550)
T 3rix_A 476 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGG 546 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhcccc
Confidence 88889999999888766778899999999999886654 576666 9999999999999999998765543
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-40 Score=294.52 Aligned_cols=203 Identities=28% Similarity=0.356 Sum_probs=179.4
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
+++++.||+||++.+++.+...... .....++|+|++++ +++|+|+ ++++++.| +.|||+|+|++++.
T Consensus 317 ~~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~ 384 (563)
T 1amu_A 317 VTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLAR 384 (563)
T ss_dssp SEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCC
T ss_pred CeEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhCh
Confidence 6899999999998766554322111 01235799999999 9999997 89999887 89999999999999
Q ss_pred hhcCCchhhhcccC-------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 86 GYLKNLKATQDAFD-------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 86 ~y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
|||++|+.|.+.|. ++||+|||+|+++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+
T Consensus 385 GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~ 464 (563)
T 1amu_A 385 GYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK 464 (563)
T ss_dssp EETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred hhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEee
Confidence 99999999988873 35999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
++..++.++++++.... .+..+|.++++++|+.|++|..+++++ ||+|++||++|++|+++.
T Consensus 465 ~~~~~~~~~a~vv~~~~--~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 465 DHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp CTTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred cCCCCeEEEEEEEeCCC--CCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 88788889999987643 678899999999999999999998877 999999999999998754
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=5.4e-40 Score=294.78 Aligned_cols=208 Identities=32% Similarity=0.537 Sum_probs=182.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|++++|.||+||++....... ........++|.|+ ++. .++|+|+ +++++|.| ++|||+|+|+
T Consensus 325 ~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~ 390 (617)
T 3rg2_A 325 EIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDD-EVWVADA-EGNPLPQG--EVGRLMTRGP 390 (617)
T ss_dssp HTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEECS
T ss_pred HhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCc-eEEEECC-CCCCCCCC--CceEEEecCc
Confidence 46899999999999964322211 11122345789998 555 9999997 89999988 8999999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
.+++||+++|+.|.+.| .++||+|||+++++++|.|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 391 ~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~ 470 (617)
T 3rg2_A 391 YTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDE 470 (617)
T ss_dssp SSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred cccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCc
Confidence 99999999999999998 58999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++++..+. .+..++.+++++ .++.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 471 ~~~~~~~a~vv~~~~--~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 471 LMGEKSCAYLVVKEP--LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp TTEEEEEEEEEESSC--CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred ccCeeEEEEEEeCCC--CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 778889999988763 678899999998 699999999998877 9999999999999999887653
No 20
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.1e-41 Score=301.64 Aligned_cols=209 Identities=30% Similarity=0.479 Sum_probs=91.6
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCcc-CCcceEEEeCCCCCcccCCCCCceeEEEEecC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPH-LGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGN 81 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~ 81 (236)
.+|+++++.||+||++....... ........++|+|+ +++ +++|+|+ ++++++.| ++|||+|+|+
T Consensus 330 ~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~ 395 (544)
T 3o83_A 330 VLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDE-QYREVPEG--EIGMLATRGP 395 (544)
T ss_dssp HHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEECT
T ss_pred HhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECC-CCCCCCCC--CeeEEEEecC
Confidence 46899999999999863322111 11123456899997 677 9999997 99999988 8999999999
Q ss_pred CcchhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCC
Q 046870 82 TVMNGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDD 160 (236)
Q Consensus 82 ~~~~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 160 (236)
+++.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++
T Consensus 396 ~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 475 (544)
T 3o83_A 396 YTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDE 475 (544)
T ss_dssp TSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------------------------
T ss_pred CcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCC
Confidence 99999999999999998 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 161 HWGETPCAFVKLKDGCVANGEEIINYCRD-RLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
..++.++++++..+ ...+..++.+++.+ .|+.|++|..+.+++ ||+|++||++|++|++++.+..
T Consensus 476 ~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 476 QFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 88888999988775 34566788888888 799999999998777 9999999999999999987643
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.9e-40 Score=290.07 Aligned_cols=203 Identities=35% Similarity=0.514 Sum_probs=173.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++.+.+...... ....++|+|++++ +++|+|+ +|++++.| +.|||+|+|++
T Consensus 323 ~~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 387 (529)
T 2v7b_A 323 HFGCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPS 387 (529)
T ss_dssp HHSCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTT
T ss_pred HhCCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCC
Confidence 46899999999999976544332111 1235799999999 9999997 89999987 89999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.|||++|+.+...|.++||+|||+++++++|+|+++||.||+||++|++|+|.+||+.|.++|.|.+++|++. +...
T Consensus 388 ~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~ 466 (529)
T 2v7b_A 388 AAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGG 466 (529)
T ss_dssp CCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETT
T ss_pred cccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 5556
Q ss_pred CceeEEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHH
Q 046870 163 GETPCAFVKLKDGCVA---NGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREK 221 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~ 221 (236)
++.+++++++.++... ..+++.++++++|+.|++|..+++++ ||+|++||++|++|+++
T Consensus 467 ~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 467 LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp EEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred ceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 6788899988765321 23679999999999999999998777 99999999999999863
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.5e-41 Score=299.24 Aligned_cols=207 Identities=27% Similarity=0.411 Sum_probs=90.3
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++++++...... ........++|+|++++ +++|+|+ ++++++.| ++|||+|+|++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~ 420 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAGLA 420 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred CcEEEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecccc
Confidence 789999999999987665543211 11112335799999999 9999997 89999988 9999999999999
Q ss_pred hhhcCCchhhhcccC---------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEE
Q 046870 85 NGYLKNLKATQDAFD---------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVV 155 (236)
Q Consensus 85 ~~y~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 155 (236)
.|||++|+.|.+.|. ++||+|||+++++++|+|+|+||+||+||++|++|+|.+||+.|.++|.|.+++|+
T Consensus 421 ~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv 500 (570)
T 4gr5_A 421 HGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVL 500 (570)
T ss_dssp CEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------
T ss_pred hhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEE
Confidence 999999999998873 37999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCC-CCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 156 GRPDDHWGETPCAFVKLKDG-CVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
+.+++..++.++++|+.... ...+.++|.++++++|+.|++|..+++++ ||+|++|||+|++|++..
T Consensus 501 ~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 501 AQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 99888778888998887643 34567899999999999999999998776 999999999999998753
No 23
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-39 Score=294.39 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=179.5
Q ss_pred ccc---CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCC-CCCceeEEEE
Q 046870 3 ELG---FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPS-DAKTIGEVMF 78 (236)
Q Consensus 3 ~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~-~~~~~Gel~v 78 (236)
.+| ++|++.||+||++++++........ .....++|.|++++ +++|+|+++|++++. + +.|||++
T Consensus 407 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~--------~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Gel~i 475 (663)
T 1ry2_A 407 KIGKNEIPIVDTYWQTESGSHLVTPLAGGVT--------PMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGVLAV 475 (663)
T ss_dssp TTSCSSSCEEECBCCTTTCSCSEECCTTTCC--------CCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEEEEE
T ss_pred HhCCCCceEEEeECCccccCeeeccCCCCCc--------ccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceEEEE
Confidence 456 8999999999998765543220000 12346899999999 999999768898877 5 7899999
Q ss_pred ec--CCcchhhcCCchhhhccc---CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEE
Q 046870 79 RG--NTVMNGYLKNLKATQDAF---DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAA 153 (236)
Q Consensus 79 ~~--~~~~~~y~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 153 (236)
++ |+++.|||++|+.+.+.+ .+|||+|||+++++++|+|+|+||.||+||++|++|++.+||+.|.++|.|.+++
T Consensus 476 ~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~ 555 (663)
T 1ry2_A 476 KAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 555 (663)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEE
T ss_pred ecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEE
Confidence 99 589999999999887765 3789999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 154 VVGRPDDHWGETPCAFVKLKDGCV---A-N------GEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 154 v~~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
|++.+++..++.++++|++.++.. . + .++|.+++++.+++|++|..+++++ ||+|++||++|++|++++
T Consensus 556 Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 635 (663)
T 1ry2_A 556 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKIL 635 (663)
T ss_dssp EECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSC
T ss_pred EEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHH
Confidence 999998878889999999886543 1 1 4789999999999999999998887 999999999999999987
Q ss_pred Hhc
Q 046870 223 KAM 225 (236)
Q Consensus 223 ~~~ 225 (236)
...
T Consensus 636 ~~~ 638 (663)
T 1ry2_A 636 AGE 638 (663)
T ss_dssp C--
T ss_pred cCC
Confidence 664
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.1e-39 Score=286.13 Aligned_cols=202 Identities=33% Similarity=0.594 Sum_probs=160.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++.+.... .........++|.|++++ +++|+|+ + . ++.|||+|+|+.
T Consensus 296 ~~~~~~~~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~-~-----~--~~~GEl~v~g~~ 357 (501)
T 3ipl_A 296 QYNLPIYNSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNP-N-----K--EGHGELMIKGAN 357 (501)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESC-C-----S--SCCEEEEEESTT
T ss_pred HhCCCEeccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecC-C-----C--CCccEEEEeccc
Confidence 35899999999999976544432 122234556899999999 9999997 3 2 267999999999
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCC
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHW 162 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 162 (236)
++.||+++|+.+.. +.+|||+|||+++++++|+++++||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..
T Consensus 358 ~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~ 436 (501)
T 3ipl_A 358 VMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTW 436 (501)
T ss_dssp SCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccC
Confidence 99999999999887 78999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 163 GETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.++++++... ..+..++.++++++|+.|++|..+.+++ ||+|++||++|++|++.....
T Consensus 437 g~~~~a~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 437 GQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred CceEEEEEEeCC--CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 888888888654 3688999999999999999999998877 999999999999999877654
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.3e-40 Score=312.52 Aligned_cols=213 Identities=27% Similarity=0.433 Sum_probs=95.0
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcc
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVM 84 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 84 (236)
++++++.||+||++.+++.+...... .......++|+|++++ +++|+|++++++++.+ +.|||+|+|+.++
T Consensus 370 ~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~ 440 (979)
T 3tsy_A 370 NAKLGQGYGMTEAGPVLAMSLGFAKE------PFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIM 440 (979)
T ss_dssp TCEEEECEECGGGCSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEeeechhhhhHHHHhCCCCCCC------ccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCcc
Confidence 78999999999998765543211110 0112345799999999 9999998789999988 8899999999999
Q ss_pred hhhcCCchhhhccc-CCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCC
Q 046870 85 NGYLKNLKATQDAF-DGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWG 163 (236)
Q Consensus 85 ~~y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 163 (236)
.|||++|+.|.+.| .+|||+|||+++++++|+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..+
T Consensus 441 ~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g 520 (979)
T 3tsy_A 441 KGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520 (979)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------
T ss_pred ccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCC
Confidence 99999999999988 58999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcC
Q 046870 164 ETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMG 226 (236)
Q Consensus 164 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~ 226 (236)
+.++++|+..++...+..++.++++++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 521 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 521 EVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ----------------------------------------------------------------
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 89999999887766778899999999999999999988776 9999999999999999987644
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.9e-40 Score=292.04 Aligned_cols=212 Identities=21% Similarity=0.251 Sum_probs=92.8
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||++..++....... ....++|+|++++ .++|+|++++.+++.| +.|||+|+|+.
T Consensus 317 ~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~ 383 (562)
T 3ite_A 317 SDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSL 383 (562)
T ss_dssp CSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTT
T ss_pred CCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccc
Confidence 468999999999999876655443221 1234789999999 9999998788889888 88999999999
Q ss_pred cchhhcCCchhhhcccCCC--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcC-CCcceEEEEeccC
Q 046870 83 VMNGYLKNLKATQDAFDGG--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSH-PSVLEAAVVGRPD 159 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~ 159 (236)
++.|||++|+.+...+.+| ||+|||++++|++|+|+|+||.||+||++|++|+|.+||+.|.++ +.+.+++++..++
T Consensus 384 v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~ 463 (562)
T 3ite_A 384 VANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNH 463 (562)
T ss_dssp SCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred cchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecC
Confidence 9999999999988777676 999999999999999999999999999999999999999999998 7778888888877
Q ss_pred CCCCceeEEEEEeCCCCCC-------------CHHHHHHHHHhcCCCCCCccEEEEcc-cCCC-CCCcccHHHHHHHHHh
Q 046870 160 DHWGETPCAFVKLKDGCVA-------------NGEEIINYCRDRLPHYMAPRTVVFED-LPKT-STGKTQKYVLREKAKA 224 (236)
Q Consensus 160 ~~~~~~~~~~v~~~~~~~~-------------~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t-~~GKi~R~~l~~~~~~ 224 (236)
+..++..++.++....... ..++|+++++++|+.|++|+.+++++ ||+| ++||++|++|++++++
T Consensus 464 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 464 PGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 7666655555544432221 12479999999999999999998777 9998 8999999999999987
Q ss_pred cCC
Q 046870 225 MGS 227 (236)
Q Consensus 225 ~~~ 227 (236)
+..
T Consensus 544 ~~~ 546 (562)
T 3ite_A 544 LSL 546 (562)
T ss_dssp ---
T ss_pred cCH
Confidence 653
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.3e-39 Score=288.29 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=164.4
Q ss_pred ccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcc-cCCCCCceeEEEEecCC
Q 046870 4 LGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKS-VPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 4 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~-~~~~~~~~Gel~v~~~~ 82 (236)
.+++++|.||+||++.++....... ........++|+|++++ +++|+|+ ++++ ++.| ++|||+|+|+.
T Consensus 301 ~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~~g--~~GEl~i~G~~ 369 (620)
T 4dg8_A 301 PRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDE-HGQEIAEPD--RAGEIVAFGAG 369 (620)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECT-TSCBCCSSS--CCEEEEEEETT
T ss_pred CCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECc-cCCCCCCCC--CceEEEEeccc
Confidence 3789999999999987655443211 11223446899999999 9999998 6666 6666 88999999999
Q ss_pred cchhhcCCchhhhcccCC--------CeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEE
Q 046870 83 VMNGYLKNLKATQDAFDG--------GWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAV 154 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~--------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 154 (236)
+++||+++|+.|.+.|.+ +||+|||++++++||+|+|+||.||+||++|++|+|.+||+.|.++|.|.+++|
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V 449 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL 449 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence 999999999999998843 799999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhc
Q 046870 155 VGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAM 225 (236)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~ 225 (236)
++.++...+. ++++++... ..+.+.+.++|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 450 v~~~~~~~~~-lv~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 450 LVRERNGVKQ-LLCAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp EEEEETTEEE-EEEEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred EEEeCCCceE-EEEEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 9887664333 333333322 123455677899999999998877 999999999999999887544
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.3e-37 Score=297.36 Aligned_cols=204 Identities=28% Similarity=0.368 Sum_probs=178.9
Q ss_pred CeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCCcch
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNTVMN 85 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 85 (236)
.+++|.||+||++..++........ ......++|+|++++ .++|+|+ +++++|.| ++|||+|+|+.+++
T Consensus 747 ~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~ 815 (1304)
T 2vsq_A 747 GKLINCYGPTEGTVFATAHVVHDLP-------DSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGMGVSK 815 (1304)
T ss_dssp TCEEEEECCGGGSSCSEEEECCCCC-------SSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEETTCCC
T ss_pred CEEEEeEChhHHhHHheeeeccCcc-------ccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEeccccCc
Confidence 6899999999998766554332110 011235799999999 9999998 89999988 89999999999999
Q ss_pred hhcCCchhhhcccC-------CCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEecc
Q 046870 86 GYLKNLKATQDAFD-------GGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRP 158 (236)
Q Consensus 86 ~y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 158 (236)
||+++|+.|.+.|. ++||+|||+|++++||.|+|+||.||+||++|++|++.+||..|.++|+|.+++|++.+
T Consensus 816 GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~ 895 (1304)
T 2vsq_A 816 GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADR 895 (1304)
T ss_dssp CBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEEC
T ss_pred cccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEe
Confidence 99999999998872 45999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHH
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKA 222 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~ 222 (236)
+...+..++++++... ..+..++++++++.|+.|++|..+++++ ||+|++||++|++|.+..
T Consensus 896 ~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 896 HESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp CSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred cCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 7777788999998765 3678999999999999999999998776 999999999999987644
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.6e-37 Score=274.01 Aligned_cols=217 Identities=19% Similarity=0.286 Sum_probs=173.7
Q ss_pred cCeeeecccccccCCCcceeecCCCCCCCCh-----------------hHHhhhhccCCCccCCcceEEEeCCCCCcccC
Q 046870 5 GFTLTHAYGLTETYGPGTVCVWKPDWNSLPR-----------------EEQAKIKARQGVPHLGLDEIDIKDPVTMKSVP 67 (236)
Q Consensus 5 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~ 67 (236)
|.++++.||+||++.+++.+........... ........++|+|++++ +++|+|+ +|++++
T Consensus 330 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~ 407 (576)
T 3gqw_A 330 NKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEH-GIEIRNE-AGMPVA 407 (576)
T ss_dssp GGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTC-EEEEECT-TSCBCC
T ss_pred cccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCC-eEEEECC-CCCCCC
Confidence 6889999999999876655432221110000 00001223799999999 9999996 999999
Q ss_pred CCCCceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHhcCC
Q 046870 68 SDAKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHP 147 (236)
Q Consensus 68 ~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 147 (236)
.| +.|||+|+|+.++.|||++|+.+...+.+|||+|||++++ ++|+|+|+||.||+||++|++|+|.+||+.|.++|
T Consensus 408 ~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p 484 (576)
T 3gqw_A 408 ER--VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEP 484 (576)
T ss_dssp TT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSS
T ss_pred CC--CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCc
Confidence 88 8999999999999999999999888888999999999999 69999999999999999999999999999999999
Q ss_pred CcceEEEEeccCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC-CCCCCccEEEEc---ccCCCCCCcccHHHHHHHHH
Q 046870 148 SVLEAAVVGRPDDHWGETPCAFVKLKDGCVANGEEIINYCRDRL-PHYMAPRTVVFE---DLPKTSTGKTQKYVLREKAK 223 (236)
Q Consensus 148 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~i~~~---~lP~t~~GKi~R~~l~~~~~ 223 (236)
.|.++++++..... +...+++...........++.+.+.+.+ +.+++|..+.++ .||+|++||++|++|+++++
T Consensus 485 ~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~ 562 (576)
T 3gqw_A 485 EIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQ 562 (576)
T ss_dssp SCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHH
T ss_pred ccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHH
Confidence 99987777765543 3355555555443344567888888888 678999888765 39999999999999999998
Q ss_pred hcCCc
Q 046870 224 AMGSI 228 (236)
Q Consensus 224 ~~~~~ 228 (236)
+....
T Consensus 563 ~~~~~ 567 (576)
T 3gqw_A 563 KAYAA 567 (576)
T ss_dssp HHHTC
T ss_pred HHhhh
Confidence 76543
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.3e-37 Score=272.90 Aligned_cols=214 Identities=23% Similarity=0.302 Sum_probs=170.1
Q ss_pred CeeeecccccccCCCcceeecCCCCCC----------------CChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCC
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNS----------------LPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSD 69 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~ 69 (236)
.++++.||+||++.+++.......+.. .+.........++|.|+++ ++|+|++++.+++.|
T Consensus 321 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~---v~i~d~~~~~~~~~g 397 (590)
T 3kxw_A 321 EAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE---VKIIDPDTLIPCDFD 397 (590)
T ss_dssp GGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE---EEEECTTTCCBCCTT
T ss_pred cccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC---eEEEcCCCCcCCCCC
Confidence 479999999999876554322111000 0001112345688999986 788998668999888
Q ss_pred CCceeEEEEecCCcchhhcCCchhhhcccCC-------C--eEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHH
Q 046870 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDG-------G--WFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVE 140 (236)
Q Consensus 70 ~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 140 (236)
++|||+|+|++++.|||++|+.|.+.|.+ | ||+|||+|+++ +|.|+|+||.||+||++|++|+|.+||
T Consensus 398 --~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE 474 (590)
T 3kxw_A 398 --QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIE 474 (590)
T ss_dssp --BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHH
T ss_pred --CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHH
Confidence 89999999999999999999999988842 5 99999999999 999999999999999999999999999
Q ss_pred HHH-hcCCCcc--eEEEEeccCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCCC-CCCcc-EEEEc---ccCCCCC
Q 046870 141 SVL-FSHPSVL--EAAVVGRPDDHWGETPCAFVKLKDGC--VANGEEIINYCRDRLPH-YMAPR-TVVFE---DLPKTST 210 (236)
Q Consensus 141 ~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~i~~~---~lP~t~~ 210 (236)
+.| ..++.|. +++|++++++. ++.+++++++.+.. ..+..++.+++++.+.. +++|. .+.++ .||+|++
T Consensus 475 ~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~s 553 (590)
T 3kxw_A 475 FSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTS 553 (590)
T ss_dssp HHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSC
T ss_pred HHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCC
Confidence 999 7789998 78888887665 67788888887653 33567888888888874 77775 45444 3999999
Q ss_pred CcccHHHHHHHHHhcC
Q 046870 211 GKTQKYVLREKAKAMG 226 (236)
Q Consensus 211 GKi~R~~l~~~~~~~~ 226 (236)
|||+|++|++++.+..
T Consensus 554 GKi~R~~L~~~~~~~~ 569 (590)
T 3kxw_A 554 GKIRRNFCRKHLLDKT 569 (590)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHcCC
Confidence 9999999999998754
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.2e-33 Score=238.12 Aligned_cols=183 Identities=21% Similarity=0.285 Sum_probs=145.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.+|+++++.||+||+++.+....... .....+|.+.|++ .+.+.+. |||+++++.
T Consensus 170 ~~~~~~~~~YG~TEt~~~~~~~~~~~-----------~~~g~~~~~~pgv-~~~~~~~-------------Gel~~~g~~ 224 (358)
T 4gs5_A 170 DLAMPVYQSYGMTETVSHVALKALNG-----------PEASELYVFLPGI-QYGVDER-------------GCLHISGAV 224 (358)
T ss_dssp TCSSCEEEEEECGGGSSEEEEEECSS-----------TTCCSCEEECTTC-EEEECTT-------------SEEEEESGG
T ss_pred ccCceEEeccccccccceeecccccc-----------cccceeeccCCCe-EEEecCc-------------CceEEeccc
Confidence 46899999999999987655443221 1234678888888 7766543 999998853
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCCeEEEEccCCCeEEEcceeeCHHHHHHHHh---cCCCcceEEEE-ecc
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDGYIELKDRSKDIIISGGENISTIEVESVLF---SHPSVLEAAVV-GRP 158 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~ 158 (236)
. .+|||+|||+++++++| ++++||.||+||++|++|+|.+||+.|. .||.|.+++|+ ..+
T Consensus 225 ~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~ 288 (358)
T 4gs5_A 225 T---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEP 288 (358)
T ss_dssp G---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEE
T ss_pred c---------------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecC
Confidence 2 37899999999999887 6678999999999999999999998774 57899988776 566
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCccEEEEcc-cCCCCCCcccHHHHHHHHHhcCC
Q 046870 159 DDHWGETPCAFVKLKDGCVANGEEIINYCRDRLPHYMAPRTVVFED-LPKTSTGKTQKYVLREKAKAMGS 227 (236)
Q Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~R~~l~~~~~~~~~ 227 (236)
++..++.++++|+.... ....++|.++++++|+.|++|+.+++++ ||+|++|||+|++|++++.+..+
T Consensus 289 d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~ 357 (358)
T 4gs5_A 289 DAKLGQKLVLVIENAMP-EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSN 357 (358)
T ss_dssp ETTTEEEEEEEEESCCC-HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC----
T ss_pred CccCCEEEEEEEECCCC-CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcC
Confidence 77778888888875543 3445789999999999999999998777 99999999999999998876543
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=1.9e-31 Score=230.04 Aligned_cols=184 Identities=23% Similarity=0.283 Sum_probs=144.9
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++.++....... ...+.+.+++ .++|+|++++++++.| +.|||+|++.
T Consensus 229 ~~g~~v~~~YG~TE~~~~~~~~~~~~~-------------~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~- 291 (436)
T 3qov_A 229 MLNVKAYNSFGMTEMNGPGVAFECQEQ-------------NGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL- 291 (436)
T ss_dssp HHTSEEEEEEEEGGGTEEEEEEECTTC-------------SSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES-
T ss_pred HhCccEEecCcchhhcCCeeEEecCCC-------------CeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc-
Confidence 468999999999999654333322110 1245666788 9999997699999988 8899999983
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecCC------e---EEEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEE
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPDG------Y---IELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAA 153 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 153 (236)
+...+.++||+|||+++++++| + ++++||.||+||++|++|+|.+||+.|.++|.|.+++
T Consensus 292 -----------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~ 360 (436)
T 3qov_A 292 -----------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360 (436)
T ss_dssp -----------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEE
T ss_pred -----------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcE
Confidence 3345568999999999999998 4 6999999999999999999999999999999999999
Q ss_pred EEeccCCCCCceeEEEEEeCCCCCCC----HHHHHHHHHhcCCCC-CCccEEEEcc---cCCCCCCcccHH
Q 046870 154 VVGRPDDHWGETPCAFVKLKDGCVAN----GEEIINYCRDRLPHY-MAPRTVVFED---LPKTSTGKTQKY 216 (236)
Q Consensus 154 v~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~i~~~~---lP~t~~GKi~R~ 216 (236)
+++.+++..++.++++|++. +...+ ..++.+.+++.++.+ ++|..+.+++ ||+|+ ||++|.
T Consensus 361 vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 361 LITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 99988777778899999988 54444 578888898888888 8898887654 99999 999885
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=4.6e-31 Score=228.06 Aligned_cols=188 Identities=23% Similarity=0.344 Sum_probs=148.4
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++.++....... ....+.+.+++ .++|+|+++|++++.| +.|||+|++.
T Consensus 235 ~~g~~v~~~YG~TE~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~- 298 (443)
T 2y4o_A 235 RVGIDALDIYGLSEVMGPGVACECVET------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL- 298 (443)
T ss_dssp HHTCEEEEEEEETTTTEEEEEEECTTT------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES-
T ss_pred HhCcCEEeccCchhhcCCeEEeccCCC------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC-
Confidence 468999999999998443222221110 00134455677 9999997689999987 8899999972
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEecC-CeE-----EEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD-GYI-----ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+...+.++||+|||+++++++ |++ +++||.+|+|+++|++|+|.+||+.|.++|.|.+++++.
T Consensus 299 -----------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 367 (443)
T 2y4o_A 299 -----------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQIT 367 (443)
T ss_dssp -----------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEE
T ss_pred -----------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEE
Confidence 334456889999999999999 986 899999999999999999999999999999999999888
Q ss_pred ccCCCCCceeEEEEEeCC--C---CCCCHHHHHHHHHhcCCCC-CCccEEEEc---ccCCCCCCcccHHH
Q 046870 157 RPDDHWGETPCAFVKLKD--G---CVANGEEIINYCRDRLPHY-MAPRTVVFE---DLPKTSTGKTQKYV 217 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~--~---~~~~~~~l~~~l~~~l~~~-~~p~~i~~~---~lP~t~~GKi~R~~ 217 (236)
.+++..++.+.++|++.+ + ...+..++.+++++.|+.+ .+|..+.++ .||+|++||++|+.
T Consensus 368 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 368 LSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 776656678888888875 2 1234578889999988876 588877665 49999999999964
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=6.6e-31 Score=226.68 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=148.5
Q ss_pred cccCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCccCCcceEEEeCCCCCcccCCCCCceeEEEEecCC
Q 046870 3 ELGFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAKTIGEVMFRGNT 82 (236)
Q Consensus 3 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~~~Gel~v~~~~ 82 (236)
.||+++++.||+||+++.++....... ....+.+.+++ .++|+|+++|++++.| +.|||++++.
T Consensus 233 ~~g~~v~~~YG~TE~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~- 296 (437)
T 2y27_A 233 RMGIDAVDIYGLSEVMGPGVASECVET------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL- 296 (437)
T ss_dssp HHTSEEEEEEEETTTTEEEEEECCTTT------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES-
T ss_pred HHCcCEEecCCchhhcCCeeEEecCCC------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC-
Confidence 469999999999998432222211110 01244566777 9999997689999987 8899999982
Q ss_pred cchhhcCCchhhhcccCCCeEeccceEEEec-CCeE-----EEEccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEe
Q 046870 83 VMNGYLKNLKATQDAFDGGWFRSGDLGVRHP-DGYI-----ELKDRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVG 156 (236)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 156 (236)
+...+.++||+|||++++++ +|++ ++.||.+|+|+++|++|+|.+||+.|.++|.|.++++++
T Consensus 297 -----------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 365 (437)
T 2y27_A 297 -----------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIV 365 (437)
T ss_dssp -----------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEE
T ss_pred -----------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEE
Confidence 33445689999999999998 6985 899999999999999999999999999999999888888
Q ss_pred ccCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCCCC-CCccEEEEc---ccCCCCCCcccHHH
Q 046870 157 RPDDHWGETPCAFVKLKDGCV---ANGEEIINYCRDRLPHY-MAPRTVVFE---DLPKTSTGKTQKYV 217 (236)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~-~~p~~i~~~---~lP~t~~GKi~R~~ 217 (236)
.+++..++.++++|++.++.. .+..++.+++++.++.+ .+|..+.++ .||+|+ ||++|+.
T Consensus 366 ~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 366 LTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 776666778999998876533 23477889999999887 588888766 399999 9999863
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.81 E-value=6.5e-21 Score=165.77 Aligned_cols=112 Identities=25% Similarity=0.359 Sum_probs=87.0
Q ss_pred CeeeecccccccCCCcceeecCCCCCC--CChhH------------HhhhhccCCCccCCcceEEEeCCCCCcccCCCCC
Q 046870 6 FTLTHAYGLTETYGPGTVCVWKPDWNS--LPREE------------QAKIKARQGVPHLGLDEIDIKDPVTMKSVPSDAK 71 (236)
Q Consensus 6 ~~i~~~YG~TE~~~~~~~~~~~~~~~~--~~~~~------------~~~~~~~~G~~~~~~~~v~i~d~~~~~~~~~~~~ 71 (236)
+++++.||+||++.+++.......... ..... ......++|+|++ + +++|+|++++++++.|
T Consensus 343 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g-- 418 (480)
T 3t5a_A 343 RVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG-- 418 (480)
T ss_dssp GGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--
T ss_pred hhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--
Confidence 479999999999876554432211000 00000 0123458999999 7 9999998678999988
Q ss_pred ceeEEEEecCCcchhhcCCchhhhccc------------CCCeEeccceEEEecCCeEEEEcc
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAF------------DGGWFRSGDLGVRHPDGYIELKDR 122 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~------------~~g~~~TGD~~~~~~~g~l~~~GR 122 (236)
++|||+|+|++++.|||++|+.|.+.| .+|||+|||+|+++ ||+|+|+||
T Consensus 419 ~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 419 TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 899999999999999999999999888 46799999999997 999999998
No 36
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.59 E-value=2.4e-15 Score=104.93 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=70.1
Q ss_pred ccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCC-CCC
Q 046870 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVANG---EEIINYCRDRLPH-YMA 196 (236)
Q Consensus 121 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~ 196 (236)
.|.||+|+++|.+++|.+||+.|.++|+|.++++++.+++.+++.+.++++..+....+. .++.+.+.+.+.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888889999998887654443 3344444444332 234
Q ss_pred ccEEEEcc---cCCCCCCcccH
Q 046870 197 PRTVVFED---LPKTSTGKTQK 215 (236)
Q Consensus 197 p~~i~~~~---lP~t~~GKi~R 215 (236)
+..+.++. ||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 44555543 9999 699988
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.59 E-value=1.9e-15 Score=105.40 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=68.1
Q ss_pred ccCCCeEEEcceeeCHHHHHHHHhcCCCcceEEEEeccCCCCCceeEEEEEeCCCCCC----CHHHHHHHHHhcCC-CCC
Q 046870 121 DRSKDIIISGGENISTIEVESVLFSHPSVLEAAVVGRPDDHWGETPCAFVKLKDGCVA----NGEEIINYCRDRLP-HYM 195 (236)
Q Consensus 121 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~-~~~ 195 (236)
||.+|+|+++|.+++|.+||+.|.++|+|.++++++.+++.+++.+++++++ ++... +..++.+.+++.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888777766677889999988 54322 23445555554442 233
Q ss_pred CccEEEEcc---cCCCCCCcccHH
Q 046870 196 APRTVVFED---LPKTSTGKTQKY 216 (236)
Q Consensus 196 ~p~~i~~~~---lP~t~~GKi~R~ 216 (236)
++..+.+++ ||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 344666553 9999 9999874
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.17 E-value=3.3e-11 Score=101.19 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=64.1
Q ss_pred ccc-cCeeeecccccccCCCcceeecCCCCCCCChhHHhhhhccCCCc------cCCcceEEEeCCCCCcccCCCCCcee
Q 046870 2 EEL-GFTLTHAYGLTETYGPGTVCVWKPDWNSLPREEQAKIKARQGVP------HLGLDEIDIKDPVTMKSVPSDAKTIG 74 (236)
Q Consensus 2 ~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~v~i~d~~~~~~~~~~~~~~G 74 (236)
+.| |+++++.||+||+++++..+.. .++|.+ ++++ .++|+|++++++++.| +.|
T Consensus 254 ~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp~G--~~G 314 (369)
T 3hgu_A 254 EILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTVEYG--ERG 314 (369)
T ss_dssp HTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBCCTT--CEE
T ss_pred HhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCCCCC--Cce
Confidence 356 8999999999999765433221 047889 8998 9999998789999988 899
Q ss_pred EEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecC--C-------eEEEEccCCCeEEEcce
Q 046870 75 EVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD--G-------YIELKDRSKDIIISGGE 132 (236)
Q Consensus 75 el~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 132 (236)
||+|++.. ...+ --+|+|||++..... | .+..++|.++..++.|.
T Consensus 315 El~vt~l~------------~~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHLS------------PWAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEE------------TTEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEcC------------cccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99998732 1111 224889999888653 2 25567777777777664
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.28 E-value=2.7e-06 Score=75.21 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=51.1
Q ss_pred CceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhc
Q 046870 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFS 145 (236)
Q Consensus 71 ~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 145 (236)
|+.+||+++.. .|+|+ |++||+++++. ..++.|.||.+++|++.|+++...+||+.+..
T Consensus 396 G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 396 GKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp TCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 38899999774 35665 99999999984 45799999999999999999999999998874
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.20 E-value=1.7e-05 Score=69.85 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=63.5
Q ss_pred CceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecC----CeEEEEccCCCeEEEcceeeCHHHHHHHHhcC
Q 046870 71 KTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD----GYIELKDRSKDIIISGGENISTIEVESVLFSH 146 (236)
Q Consensus 71 ~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 146 (236)
|+.+||++++.+ |.|+ |++||++++..- .++.|.||.++++++.|+++...+||+.+...
T Consensus 391 G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a 454 (581)
T 4epl_A 391 GEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESA 454 (581)
T ss_dssp TCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred CCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHH
Confidence 388999998853 4555 999999999752 47999999999999999999999999988742
Q ss_pred --------CCcceEEEEeccCCCCCceeEEEEEeCC
Q 046870 147 --------PSVLEAAVVGRPDDHWGETPCAFVKLKD 174 (236)
Q Consensus 147 --------~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 174 (236)
-.+.+..++...... ...-+++.++..
T Consensus 455 ~~~l~~~~~~l~eft~~~d~~~~-p~hyv~~wE~~~ 489 (581)
T 4epl_A 455 AKRLSEEKIEVIDFSSYIDVSTD-PGHYAIFWEISG 489 (581)
T ss_dssp HHHHHTTTCCEEEEEEEEECSSS-SCEEEEEEEESS
T ss_pred HHhhcccCCeEEEEEEecCCCCC-CCcEEEEEeecC
Confidence 236677666532221 123444556653
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.19 E-value=2.7e-06 Score=74.96 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=52.4
Q ss_pred CCceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEec----CCeEEEEccCCCeEEEcceeeCHHHHHHHHhc
Q 046870 70 AKTIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHP----DGYIELKDRSKDIIISGGENISTIEVESVLFS 145 (236)
Q Consensus 70 ~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 145 (236)
.|+.+||++++.+ |.|+ |++||++++.. ..++.|.||.++++++.|+++...+||+.+..
T Consensus 383 ~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 383 LGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHH
T ss_pred CCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHH
Confidence 3488999998853 4555 99999999986 35799999999999999999999999999885
Q ss_pred CC
Q 046870 146 HP 147 (236)
Q Consensus 146 ~~ 147 (236)
..
T Consensus 447 a~ 448 (581)
T 4eql_A 447 AK 448 (581)
T ss_dssp C-
T ss_pred HH
Confidence 53
No 42
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=21.72 E-value=1.7e+02 Score=18.87 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=35.1
Q ss_pred ceeEEEEecCCcchhhcCCchhhhcccCCCeEeccceEEEecC-CeEEEEccCC
Q 046870 72 TIGEVMFRGNTVMNGYLKNLKATQDAFDGGWFRSGDLGVRHPD-GYIELKDRSK 124 (236)
Q Consensus 72 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~g~~~TGD~~~~~~~-g~l~~~GR~~ 124 (236)
..+.|.+++.-+-..|--+|....+....+ ..-||+.++|.+ |.+.-+||.+
T Consensus 33 ~~~~itLkT~d~ek~l~lg~~i~e~L~kek-V~~GDVI~Id~~sG~V~klGRs~ 85 (95)
T 2cqa_A 33 KVGKLTLKTTEMETIYDLGTKMIESLTKDK-VQAGDVITIDKATGKISKLGRSF 85 (95)
T ss_dssp CEEEEEEECSSSEEEEEECSHHHHHHHHTT-CCTTSEEEEETTTTEEEEEECCC
T ss_pred eEEEEEEEecCCcEEEeCCHHHHHHHHHcC-ceeCCEEEEEccCCEEEEEEEee
Confidence 568888887655555544444333322223 678999999984 9999999985
Done!