BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046871
(764 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 133/317 (41%), Gaps = 65/317 (20%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS 114
+ +GS D TLK WS G C T H V + + DN ++S S+D TLK WN +
Sbjct: 132 IVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQM-RDNIIISGSTDRTLKVWNAET 188
Query: 115 DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174
G CI TL H+ V C+ EK V SG A + +WDIE
Sbjct: 189 -GECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIE----------------- 227
Query: 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234
+G L V GH +V + + G +VS
Sbjct: 228 -----TGQCLHV--------------------------LMGHVAAVRCVQYD--GRRVVS 254
Query: 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294
G + +V+VWDP T + L+GHT+ + SL D G + +SGS D+ IR+WD+ CI
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCI 312
Query: 295 HSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG----EHPILQLAL 350
H+ H + + SG D ++ + D+ T + L G + + L
Sbjct: 313 HTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 351 HDDNIWVATTDSSVHRW 367
+ + + ++ D +V W
Sbjct: 371 NKNFVITSSDDGTVKLW 387
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 147/377 (38%), Gaps = 94/377 (24%)
Query: 80 FESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNS 139
+ H D V + N +VS S D TLK W+ + G C+RTL H+ V +++
Sbjct: 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGV---WSSQMRD 169
Query: 140 NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSIS 199
NI+ SG + +W+ E +G+ +
Sbjct: 170 NIIISGSTDRTLKVWNAE-------TGECI------------------------------ 192
Query: 200 AHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT 259
HT GH +V + +++ +VSG + +RVWD TG L GH
Sbjct: 193 -HT----------LYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG 319
+R + D GR +SG+ D M+++WD + C+H+ HT+ V++L HV SG
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSG 295
Query: 320 GRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVA-TTDSSVHRWPAEGRNPQKVF 378
D S+ + D+ T + TG + DNI V+ DS+V W
Sbjct: 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW----------- 344
Query: 379 QRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA 438
++ + +L+G S F N+ V+T
Sbjct: 345 ---------DIKTGQCLQTLQGPNKHQSAVTCLQF---------------NKNFVITSSD 380
Query: 439 AGSVKLWEITRGVVVED 455
G+VKLW++ G + +
Sbjct: 381 DGTVKLWDLKTGEFIRN 397
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 69/258 (26%)
Query: 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLV 93
H + + C+ + + V +GSRD TL+ W + + G C HV V V
Sbjct: 198 HTSTVRCMHLHEKRV-------VSGSRDATLRVWDI--ETGQCLHVLMGHVAAVR-CVQY 247
Query: 94 GDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153
+VS + D +K W+ ++ TC+ TL+ H++ V L + + V SG L + +
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIRV 303
Query: 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA 213
WD+E +GN + ++++ H S + G
Sbjct: 304 WDVE----------------------TGNCI-----------HTLTGHQSLTSG------ 324
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG---HTDNIRSLLLDST 270
M N+LVSG + V++WD +TG L+G H + L +
Sbjct: 325 -----------MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Query: 271 GRYCLSGSSDSMIRLWDL 288
+ ++ S D ++LWDL
Sbjct: 374 --FVITSSDDGTVKLWDL 389
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 17/131 (12%)
Query: 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113
++ +GS D +++ W + + G+C T H + + + DN LVS ++D+T+K W+
Sbjct: 291 HVVSGSLDTSIRVWDV--ETGNCIHTLTGHQS-LTSGMELKDNILVSGNADSTVKIWDIK 347
Query: 114 SDGTCIRTLR---QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
+ G C++TL+ +H VTCL + N N V + V +WD+ K+G+ +
Sbjct: 348 T-GQCLQTLQGPNKHQSAVTCL---QFNKNFVITSSDDGTVKLWDL-------KTGEFIR 396
Query: 171 DDCSTGINGSG 181
+ + GSG
Sbjct: 397 NLVTLESGGSG 407
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 27/290 (9%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLV-SCSSDTTLKTWNCS 113
+ + S D T+K W + G T + H D V D L+ SCS+D T+K W+
Sbjct: 123 MVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA-------------- 159
CIRT+ H V+ ++ +IV S + +W+++
Sbjct: 181 G-FECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 160 -LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKE 218
+ P++ G + CS N + V + + + H + + P ++
Sbjct: 239 MVRPNQDGTLIA-SCS---NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 219 SVYALAMNDSGN---LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275
SG L+SG +K +++WD TG + L GH + +R +L S G++ L
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 354
Query: 276 SGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSL 325
S + D +R+WD +RC+ + H V +L T +V +G D ++
Sbjct: 355 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 105/261 (40%), Gaps = 43/261 (16%)
Query: 37 GINCLAVLK------SSVS---NGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWV 87
G C+ + SSVS NG D++ + SRD T+K W + G C TF H +WV
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWV 237
Query: 88 NDAVLVGDNTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG 146
D TL+ SCS+D T++ W ++ C LR+H V C++ A ++S S
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEA 296
Query: 147 LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQ 206
G+E SG P GS + S
Sbjct: 297 TGSET--------------------------KKSGKPGP---FLLSGSRDKTIKMWDVST 327
Query: 207 GYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLL 266
G + GH V + + G ++S +K +RVWD + L H + SL
Sbjct: 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387
Query: 267 LDSTGRYCLSGSSDSMIRLWD 287
T Y ++GS D +++W+
Sbjct: 388 FHKTAPYVVTGSVDQTVKVWE 408
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%)
Query: 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271
A GH+ V + + +++VS + ++VWD TG L+GHTD+++ + D +G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331
+ S S+D I+LWD CI + H +V +++ P H+ S RD ++ + ++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 332 TRESLLLCTGEHPILQLA 349
T + TG +++
Sbjct: 223 TGYCVKTFTGHREWVRMV 240
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 122/301 (40%), Gaps = 43/301 (14%)
Query: 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
+ +VS S D T+K W+ + G RTL+ H+D V + + + + ++AS + +WD
Sbjct: 121 SVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWD 178
Query: 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL-----RTIGSSNSISAHTSQSQ-GYV 209
+ +C ++G +++ S+ + +S + + Q GY
Sbjct: 179 FQGF------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 210 PIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL---- 265
GH+E V + N G L+ S ++ VRVW T +LR H + +
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 266 ------LLDSTGR----------YCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS 309
+ ++TG + LSGS D I++WD+ C+ + H + V +
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 310 TPTFSHVYSGGRDLSLYLTDLATRESL-LLCTGEHPILQLALHDDNIWVAT--TDSSVHR 366
+ S D +L + D + + L EH + L H +V T D +V
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 367 W 367
W
Sbjct: 407 W 407
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%)
Query: 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244
PV S+ S ++ G KGH +SV ++ + SG LL S + +++W
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 245 DPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV 304
D + + GH N+ S+ + G + +S S D I++W++ C+ ++ H + V
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237
Query: 305 WALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+ + + S D ++ + +AT+E
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKE 267
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 39 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ + K+ A D
Sbjct: 97 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSD 153
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 204
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+M+
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ C+ + H+D V A+ S + S D + D A+ +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 226 KGKCLKTYTGH 236
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 101/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG- 142
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
+C + L H D + S+VH F R GS I +
Sbjct: 143 ---MC-----LKTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 176
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 177 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 454 EDY 456
+ Y
Sbjct: 231 KTY 233
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 39 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ + K+ A D
Sbjct: 97 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSD 153
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 204
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+M+
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ C+ + H+D V A+ S + S D + D A+ +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+ + W
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D L L D +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 226 KGKCLKTYTGH 236
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG- 142
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
+C + L H D + S+VH F R GS I +
Sbjct: 143 ---MC-----LKTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 176
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L +KLW+ ++G +
Sbjct: 177 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL 230
Query: 454 EDY 456
+ Y
Sbjct: 231 KTY 233
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 27/290 (9%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 39 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 97 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 153
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 204
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG----RDLSLYLTD 329
+W+L + + HTD V + A PT + + S + + LY +D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKSD 314
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 144 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 176
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 177 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 454 EDY 456
+ Y
Sbjct: 231 KTY 233
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 42 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 100 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 156
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 207
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 229 KGKCLKTYTGH 239
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 147 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 179
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 180 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 233
Query: 454 EDY 456
+ Y
Sbjct: 234 KTY 236
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 60 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 117
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 118 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 174
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 225
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVVISTACHPT 314
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 247 KGKCLKTYTGH 257
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 164
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 165 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 197
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 198 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 251
Query: 454 EDY 456
+ Y
Sbjct: 252 KTY 254
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 58 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 116 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSD 172
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 223
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHPT 312
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 245 KGKCLKTYTGH 255
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 163 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 195
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 196 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249
Query: 454 EDY 456
+ Y
Sbjct: 250 KTY 252
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 32 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 90 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 146
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 197
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 257
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 258 YIWNLQTKEIVQKLQGHTDVVISTACHPT 286
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 91 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 150
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 210 NTLKLWDYSKGKCLKTYTGH 229
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 136
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 137 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 169
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 170 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 223
Query: 454 EDY 456
+ Y
Sbjct: 224 KTY 226
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 53 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 111 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 167
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 218
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPT 307
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 112 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 171
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 231 NTLKLWDYSKGKCLKTYTGH 250
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 157
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 158 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 190
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 191 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 244
Query: 454 EDY 456
+ Y
Sbjct: 245 KTY 247
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 115/280 (41%), Gaps = 53/280 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 36 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI--------------- 156
SS G C++TL+ HS+YV C SN++ SG V IWD+
Sbjct: 94 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 157 --------EAALAPSKSGDAMEDDCSTGINGSGNSL---------PVTSLRTIGSSNSIS 199
+ +L S S D + C SG L PV+ ++ + I
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGL---CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 200 AHT--------SQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRT 248
A T S+G GHK Y + N S G +VSG + +V +W+ +T
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--SDSMIRLW 286
KL+GHTD + S T S + +D I+LW
Sbjct: 269 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH 233
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 141 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 173
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 174 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227
Query: 454 EDY 456
+ Y
Sbjct: 228 KTY 230
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 42 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 100 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 156
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 207
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 229 KGKCLKTYTGH 239
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 35/267 (13%)
Query: 192 IGSSNSISAHTSQSQGY-VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
+GSS + S T Y + GH ++V ++ + +G L S +K++++W G
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 251 KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST 310
+ GH I + S +S S D +++WD+ +C+ + H++ V+
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 311 PTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAE 370
P + + SG D S+ + D+ T + L L H D + S+VH
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCL---------KTLPAHSDPV------SAVH----- 162
Query: 371 GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNN 429
F R GS I + R+ S + + + N P + + N
Sbjct: 163 -------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN------PPVSFVKFSPN 209
Query: 430 RRHVLTKDAAGSVKLWEITRGVVVEDY 456
+++L ++KLW+ ++G ++ Y
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 115/280 (41%), Gaps = 53/280 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 37 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI--------------- 156
SS G C++TL+ HS+YV C SN++ SG V IWD+
Sbjct: 95 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 157 --------EAALAPSKSGDAMEDDCSTGINGSGNSL---------PVTSLRTIGSSNSIS 199
+ +L S S D + C SG L PV+ ++ + I
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGL---CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 200 AHT--------SQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRT 248
A T S+G GHK Y + N S G +VSG + +V +W+ +T
Sbjct: 210 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 269
Query: 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--SDSMIRLW 286
KL+GHTD + S T S + +D I+LW
Sbjct: 270 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 96 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 155
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 215 NTLKLWDYSKGKCLKTYTGH 234
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 141
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 142 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 174
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 175 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 228
Query: 454 EDY 456
+ Y
Sbjct: 229 KTY 231
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 115/280 (41%), Gaps = 53/280 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 36 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI--------------- 156
SS G C++TL+ HS+YV C SN++ SG V IWD+
Sbjct: 94 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 157 --------EAALAPSKSGDAMEDDCSTGINGSGNSL---------PVTSLRTIGSSNSIS 199
+ +L S S D + C SG L PV+ ++ + I
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGL---CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 200 AHT--------SQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRT 248
A T S+G GHK Y + N S G +VSG + +V +W+ +T
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--SDSMIRLW 286
KL+GHTD + S T S + +D I+LW
Sbjct: 269 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH 233
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 141 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 173
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 174 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227
Query: 454 EDY 456
+ Y
Sbjct: 228 KTY 230
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 35 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 93 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 149
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 200
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 260
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 261 YIWNLQTKEIVQKLQGHTDVVISTACHPT 289
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 94 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 153
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 213 NTLKLWDYSKGKCLKTYTGH 232
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 139
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 140 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 172
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 173 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 226
Query: 454 EDY 456
+ Y
Sbjct: 227 KTY 229
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 39 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
SS G C++TL+ HS+YV C SN++ SG V IWD++ K+ A D
Sbjct: 97 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCL-KTLPAHSD 153
Query: 172 DCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226
S SL V+S R +++ T P++ + +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF---------VKFS 204
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD---STGRYCLSGSSDSMI 283
+G +++ + +++WD G GH + + + + G++ +SGS D+++
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 284 RLWDLGQQRCIHSYAVHTDSVWALASTPT 312
+W+L + + HTD V + A PT
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 144 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 176
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 177 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 454 EDY 456
+ Y
Sbjct: 231 KTY 233
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 115/280 (41%), Gaps = 53/280 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L + S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 41 EWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI--------------- 156
SS G C++TL+ HS+YV C SN++ SG V IWD+
Sbjct: 99 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 157 --------EAALAPSKSGDAMEDDCSTGINGSGNSL---------PVTSLRTIGSSNSIS 199
+ +L S S D + C SG L PV+ ++ + I
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGL---CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 200 AHT--------SQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRT 248
A T S+G GHK Y + N S G +VSG + +V +W+ +T
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--SDSMIRLW 286
KL+GHTD + S T S + +D I+LW
Sbjct: 274 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 228 KGKCLKTYTGH 238
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L S +K++++W G + GH I + S
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 145
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 146 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 178
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 179 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 232
Query: 454 EDY 456
+ Y
Sbjct: 233 KTY 235
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 132/328 (40%), Gaps = 60/328 (18%)
Query: 5 GSAGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTL 64
G+ G++A ++P K Y L K + AV S ++L + S D +
Sbjct: 1 GAMGSSATQSKPTPVKP-NYAL------KFTLAGHTKAVSSVKFSPNGEWLASSSADKLI 53
Query: 65 KRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLR 123
K W D G T H ++D D N LVS S D TLK W+ SS G C++TL+
Sbjct: 54 KIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLK 110
Query: 124 QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI-----------------------EAAL 160
HS+YV C SN++ SG V IWD+ + +L
Sbjct: 111 GHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 161 APSKSGDAMEDDCSTGINGSGNSL---------PVTSLRTIGSSNSISAHT--------S 203
S S D + C SG L PV+ ++ + I A T
Sbjct: 170 IVSSSYDGL---CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 204 QSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD 260
S+G GHK Y + N S G +VSG + +V +W+ +T KL+GHTD
Sbjct: 227 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 261 NIRSLLLDSTGRYCLSGS--SDSMIRLW 286
+ S T S + +D I+LW
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
KGH V+ N NL+VSG ++ VR+WD +TG L H+D + ++ + G
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRDLSLYLTDLA 331
+S S D + R+WD +C+ + + D+ V + +P ++ + D +L L D +
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 332 TRESLLLCTGE 342
+ L TG
Sbjct: 229 KGKCLKTYTGH 239
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 35/267 (13%)
Query: 192 IGSSNSISAHTSQSQGY-VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
+GSS + S T Y + GH ++V ++ + +G L S +K++++W G
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 251 KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST 310
+ GH I + S +S S D +++WD+ +C+ + H++ V+
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 311 PTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAE 370
P + + SG D S+ + D+ T + L L H D + S+VH
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCL---------KTLPAHSDPV------SAVH----- 162
Query: 371 GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNN 429
F R GS I + R+ S + + + N P + + N
Sbjct: 163 -------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN------PPVSFVKFSPN 209
Query: 430 RRHVLTKDAAGSVKLWEITRGVVVEDY 456
+++L ++KLW+ ++G ++ Y
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 114/280 (40%), Gaps = 53/280 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWN 111
++L S D +K W D G T H ++D D N LVS S D TLK W+
Sbjct: 39 EWLAASSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI--------------- 156
SS G C++TL+ HS+YV C SN++ SG V IWD+
Sbjct: 97 VSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 157 --------EAALAPSKSGDAMEDDCSTGINGSGNSL---------PVTSLRTIGSSNSIS 199
+ +L S S D + C SG L PV+ ++ + I
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGL---CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 200 AHT--------SQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRT 248
A T S+G GHK Y + N S G +VSG + +V +W+ +T
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--SDSMIRLW 286
KL+GHTD + S T S + +D I+LW
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK + +A + NLLVS +K +++WD +G L+GH++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+SGS D +R+WD+ +C+ + H+D V A+ S + S D + D A+ +
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 335 SL-LLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367
L L ++P + N I AT D+++ W
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264
S G KGH V+ N NL+VSG ++ VR+WD +TG L H+D + +
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALASTPTFSHVYSGGRD 322
+ + G +S S D + R+WD +C+ + + D+ V + +P ++ + D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 323 LSLYLTDLATRESLLLCTGE 342
+L L D + + L TG
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH ++V ++ + +G L + +K++++W G + GH I + S
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
+S S D +++WD+ +C+ + H++ V+ P + + SG D S+ + D+ T +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 335 SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394
L L H D + S+VH F R GS I +
Sbjct: 144 CL---------KTLPAHSDPV------SAVH------------FNRDGSLIVSSSYDGLC 176
Query: 395 RVSLEGSTP-VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453
R+ S + + + N P + + N +++L ++KLW+ ++G +
Sbjct: 177 RIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 454 EDY 456
+ Y
Sbjct: 231 KTY 233
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAE-KNSNIVASGGLGAEVFIWDI 156
LVS S+D T++ W+ G C H+ V CL E KN + +G + +W +
Sbjct: 176 LVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216
P +S S +G + P+ HT + Y +GH
Sbjct: 235 -----PKES--------SVPDHGEEHDYPLV------------FHTPEENPYFVGVLRGH 269
Query: 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276
SV ++ GN++VSG + + VWD L GHTD I S + D + C+S
Sbjct: 270 MASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF 313
S D+ IR+WDL +++ HT V L + F
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 208 YVP--IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265
+VP +GH SV + N +++G +K++RV+D ++L GH + +L
Sbjct: 110 FVPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 168
Query: 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL--ASTPTFSHVYSGGRDL 323
+ G +SGS+D +R+WD+ + C H + H +V L ++ +G RD
Sbjct: 169 KY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 324 SLYLTDLATRESLLLCTGEHPILQLALH 351
+L++ L +ES + GE L H
Sbjct: 228 TLHVWKLP-KESSVPDHGEEHDYPLVFH 254
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 28/204 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG--R 272
GH V+AL G +LVSG T++ VRVWD + G T GH +R L + +
Sbjct: 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 273 YCLSGSSDSMIRLWDLGQQRCI------HSY--AVHTDSV---------WALASTPTFSH 315
Y ++GS D+ + +W L ++ + H Y HT +AS T S
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 316 ----VYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHD---DNIWVATTDSSVHRWP 368
V SG D +L + D+A + L + +G + ++D A+ D+++ W
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Query: 369 AEGRNPQKVFQRGGSFIAGNLSFS 392
E Q G + + G L S
Sbjct: 339 LENGELMYTLQ-GHTALVGLLRLS 361
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 255 LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314
LRGH ++R++ G +SGS D+ + +WD+ Q +C++ + HTD +++
Sbjct: 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 315 HVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWV-ATTDSSVHRWPAEGRN 373
S D ++ + DL E + G ++ L D V A D S+ W A
Sbjct: 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND-- 381
Query: 374 PQKVFQRGGSFIAGNLS 390
+ R S+ NLS
Sbjct: 382 ----YSRKFSYHHTNLS 394
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 244 WDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS 303
++P+ + LRGH ++ + L Y ++G+ D MIR++D ++ + + H
Sbjct: 106 YNPKFVPQRTTLRGHMTSVITCL-QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG 164
Query: 304 VWAL 307
VWAL
Sbjct: 165 VWAL 168
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAE-KNSNIVASGGLGAEVFIWDI 156
LVS S+D T++ W+ G C H+ V CL E KN + +G + +W +
Sbjct: 176 LVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216
P +S S +G + P+ HT + Y +GH
Sbjct: 235 -----PKES--------SVPDHGEEHDYPLV------------FHTPEENPYFVGVLRGH 269
Query: 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276
SV ++ + GN++VSG + + VWD L GHTD I S + D + C+S
Sbjct: 270 XASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF 313
S D+ IR+WDL ++ HT V L + F
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 208 YVP--IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265
+VP +GH SV + N +++G +K +RV+D ++L GH + +L
Sbjct: 110 FVPQRTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL 168
Query: 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL--ASTPTFSHVYSGGRDL 323
+ G +SGS+D +R+WD+ + C H + H +V L ++ +G RD
Sbjct: 169 KY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 324 SLYLTDLATRESLLLCTGEHPILQLALH 351
+L++ L +ES + GE L H
Sbjct: 228 TLHVWKLP-KESSVPDHGEEHDYPLVFH 254
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG--R 272
GH V+AL G +LVSG T++ VRVWD + G T GH +R L + +
Sbjct: 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 273 YCLSGSSDSMIRLWDLGQQRCI------HSY--AVHTDS-----VWAL----ASTPTFSH 315
Y ++GS D+ + +W L ++ + H Y HT V L AS T S
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 316 ----VYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWP 368
V SG D +L + D+A + L + +G + ++D A+ D+++ W
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Query: 369 AEGRNPQKVFQRGGSFIAGNLSFS 392
E Q G + + G L S
Sbjct: 339 LENGELXYTLQ-GHTALVGLLRLS 361
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 255 LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314
LRGH ++R++ G +SGS D+ + +WD+ Q +C++ + HTD +++
Sbjct: 266 LRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 315 HVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWV-ATTDSSVHRWPAEGRN 373
S D ++ + DL E G ++ L D V A D S+ W A
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND-- 381
Query: 374 PQKVFQRGGSFIAGNLS 390
+ R S+ NLS
Sbjct: 382 ----YSRKFSYHHTNLS 394
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 48/261 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVND-AVLVGDNTLVSCSSDTTLKTWN 111
+++ GS D ++ ++ + G FE+H D++ AV ++S S D T+K WN
Sbjct: 68 NWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
++ +T H +V C+A K+ + ASG L V +W +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------------- 170
Query: 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231
G S P +L T G ++ Y P+ K +
Sbjct: 171 ---------GQSTPNFTL-TTGQERGVNY-----VDYYPLPDKPY--------------- 200
Query: 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ 291
+++ + +++WD +T S L GH N+ + T +SGS D +++W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 292 RCIHSYAVHTDSVWALASTPT 312
+ + V + W +A+ PT
Sbjct: 261 KVEKTLNVGLERSWCIATHPT 281
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289
N ++ G + +RV++ TG K + H D IRS+ + T Y LSGS D ++LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 290 QQRCI-HSYAVHTDSVWALASTPTFSHVYSGG 320
+ ++ H V +A P ++ G
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 214 KGHKESVYALAMNDSG-NLLVSGGTEKVVRVWD-----PRTGSKTIKLRGHTDNIRSLLL 267
+GH+ V +A N + SG ++ V+VW P T + RG L
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327
D Y ++ S D I++WD + C+ + H +V PT + SG D +L +
Sbjct: 197 DKP--YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 328 TDLAT 332
+ +T
Sbjct: 255 WNSST 259
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH 300
V +W+ T + ++ +R+ + + + GS D IR+++ + + H
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 301 TDSVWALASTPTFSHVYSGGRDLSLYLTD----------LATRESLLLCTGEHP 344
D + ++A PT +V SG DL++ L + E ++C +P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 48/261 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVND-AVLVGDNTLVSCSSDTTLKTWN 111
+++ GS D ++ ++ + G FE+H D++ AV ++S S D T+K WN
Sbjct: 68 NWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
++ +T H +V C+A K+ + ASG L V +W +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------------- 170
Query: 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231
G S P +L T G ++ Y P+ K +
Sbjct: 171 ---------GQSTPNFTL-TTGQERGVNY-----VDYYPLPDKPY--------------- 200
Query: 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ 291
+++ + +++WD +T S L GH N+ + T +SGS D +++W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 292 RCIHSYAVHTDSVWALASTPT 312
+ + V + W +A+ PT
Sbjct: 261 KVEKTLNVGLERSWCIATHPT 281
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289
N ++ G + +RV++ TG K + H D IRS+ + T Y LSGS D ++LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 290 QQRCI-HSYAVHTDSVWALASTPTFSHVYSGG 320
+ ++ H V +A P ++ G
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 214 KGHKESVYALAMNDSG-NLLVSGGTEKVVRVWD-----PRTGSKTIKLRGHTDNIRSLLL 267
+GH+ V +A N + SG ++ V+VW P T + RG L
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327
D Y ++ S D I++WD + C+ + H +V PT + SG D +L +
Sbjct: 197 DKP--YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 328 TDLAT 332
+ +T
Sbjct: 255 WNSST 259
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH 300
V +W+ T + ++ +R+ + + + GS D IR+++ + + H
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 301 TDSVWALASTPTFSHVYSGGRDLSLYLTD----------LATRESLLLCTGEHP 344
D + ++A PT +V SG DL++ L + E ++C +P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 115/274 (41%), Gaps = 17/274 (6%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCS 113
+ + S D T+K W + G T H V D T+ S S D T+K WN
Sbjct: 195 IASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 249
Query: 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173
+G ++TL HS V +A + +AS V +W+ L + +G
Sbjct: 250 RNGQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKLWNRNGQLLQTLTG------H 302
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
S+ + G S ++ + ++ Q + GH SV+ +A + G +
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIA 360
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC 293
S +K V++W+ R G L GH+ ++R + G+ S S D ++LW+ Q
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-L 418
Query: 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327
+ + H+ SVW +A +P + S D ++ L
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 13/231 (5%)
Query: 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
T+ S S D T+K WN +G ++TL HS V +A + + +AS V +W+
Sbjct: 358 TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR 414
Query: 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216
L + +G G+ S + + S +S+ + G + GH
Sbjct: 415 NGQLLQTLTG---HSSSVWGVAFSPDDQTIAS-----ASDDKTVKLWNRNGQLLQTLTGH 466
Query: 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276
SV +A + G + S +K V++W+ R G L GH+ ++R + G+ S
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327
S D ++LW+ Q + + H+ SVW +A +P + S D ++ L
Sbjct: 526 ASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 35/293 (11%)
Query: 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
T+ S S D T+K WN +G ++TL HS V +A + + +AS V +W+
Sbjct: 71 TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR 127
Query: 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216
L + +G G+ S + + S +S+ + G + GH
Sbjct: 128 NGQLLQTLTG---HSSSVWGVAFSPDGQTIAS-----ASDDKTVKLWNRNGQLLQTLTGH 179
Query: 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276
SV+ +A + G + S +K V++W+ R G L GH+ ++R + G+ S
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
S D ++LW+ Q + + H+ SV +A P + S D ++ L + R
Sbjct: 239 ASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN---RNGQ 294
Query: 337 LLCTGEHPILQLALHDDNIW------------VATTDSSVHRWPAEGRNPQKV 377
LL T L H ++W A+ D +V W G++ Q +
Sbjct: 295 LLQT-------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL 340
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH SV+ +A + G + S +K V++W+ R G L GH+ ++R + G+
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334
S S D ++LW+ Q + + H+ SVW +A +P + S D ++ L + R
Sbjct: 114 ASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN---RN 169
Query: 335 SLLLCTGEHPILQLALHDDNIW 356
LL T L H ++W
Sbjct: 170 GQLLQT-------LTGHSSSVW 184
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
T+ S S D T+K WN +G ++TL HS V +A + + +AS V +W+
Sbjct: 30 TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR 86
Query: 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216
L + +G G+ S + + S +S+ + G + GH
Sbjct: 87 NGQLLQTLTG---HSSSVRGVAFSPDGQTIAS-----ASDDKTVKLWNRNGQLLQTLTGH 138
Query: 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276
SV+ +A + G + S +K V++W+ R G L GH+ ++ + G+ S
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 197
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327
S D ++LW+ Q + + H+ SV +A +P + S D ++ L
Sbjct: 198 ASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 16/234 (6%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCS 113
+ + S D T+K W + G T H V D T+ S S D T+K WN
Sbjct: 359 IASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 413
Query: 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173
+G ++TL HS V +A + + I AS V +W+ L + +G
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQLLQTLTG---HSSS 469
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
G+ S + + S +S+ + G + GH SV +A + G +
Sbjct: 470 VRGVAFSPDGQTIAS-----ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287
S +K V++W+ R G L GH+ ++ + G+ S SSD ++LW+
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 22/251 (8%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW----DIEAALAPSKSGDA---MEDDC 173
TL H+ +VT LA + N++ S + W D + P +S + DC
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
+ +G+ +L + +T+ + + T Q +V GHK V ++ ++ ++++
Sbjct: 72 TLTADGA-YALSASWDKTLRLWDVATGETYQR--FV-----GHKSDVMSVDIDKKASMII 123
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL------DSTGRYCLSGSSDSMIRLWD 287
SG +K ++VW + G L GH D + + + D +S +D M++ W+
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347
L Q + + H ++ L ++P + + S G+D + L +LA ++++ + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242
Query: 348 LALHDDNIWVA 358
LA + W+A
Sbjct: 243 LAFSPNRYWLA 253
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 103/263 (39%), Gaps = 50/263 (19%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
+ L + SRD TL W L D G +F+ H V D L D +S S D TL+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ T R + SD ++ +K ++++ SG + +W I+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
C + G + V+ +R + + + +D
Sbjct: 139 ---QCLATLLGHNDW--VSQVRVVPNEKA----------------------------DDD 165
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++S G +K+V+ W+ GH NI +L G S D I LW+L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 289 GQQRCIHSYAVHTDSVWALASTP 311
++ +++ + D V++LA +P
Sbjct: 226 AAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 40/223 (17%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN------ 96
V+ + + +GSRD T+K W++ G C AT H DWV+ +V +
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
T++S +D +K WN + + +S+ T A+ + ++AS G E+ +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWN 224
Query: 156 IEA--------------ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201
+ A +LA S + + +TGI + ++ +
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK----------VFSLDPQYLVDDL 274
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244
+ GY +K + +LA + G L +G T+ V+RVW
Sbjct: 275 RPEFAGY----SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 22/251 (8%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW----DIEAALAPSKSGDA---MEDDC 173
TL H+ +VT LA + N++ S + W D + P +S + DC
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
+ +G+ +L + +T+ + + T Q +V GHK V ++ ++ ++++
Sbjct: 66 TLTADGA-YALSASWDKTLRLWDVATGETYQR--FV-----GHKSDVMSVDIDKKASMII 117
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL------DSTGRYCLSGSSDSMIRLWD 287
SG +K ++VW + G L GH D + + + D +S +D M++ W+
Sbjct: 118 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347
L Q + + H ++ L ++P + + S G+D + L +LA ++++ + + +
Sbjct: 177 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 236
Query: 348 LALHDDNIWVA 358
LA + W+A
Sbjct: 237 LAFSPNRYWLA 247
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 103/263 (39%), Gaps = 50/263 (19%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
+ L + SRD TL W L D G +F+ H V D L D +S S D TL+
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ T R + SD ++ +K ++++ SG + +W I+
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTIKVWTIKG---------- 132
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
C + G + V+ +R + + + +D
Sbjct: 133 ---QCLATLLGHNDW--VSQVRVVPNEKA----------------------------DDD 159
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++S G +K+V+ W+ GH NI +L G S D I LW+L
Sbjct: 160 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Query: 289 GQQRCIHSYAVHTDSVWALASTP 311
++ +++ + D V++LA +P
Sbjct: 220 AAKKAMYTLSAQ-DEVFSLAFSP 241
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 40/229 (17%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN------ 96
V+ + + +GSRD T+K W++ G C AT H DWV+ +V +
Sbjct: 104 VMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
T++S +D +K WN + + +S+ T A+ + ++AS G E+ +W+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWN 218
Query: 156 IEA--------------ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201
+ A +LA S + + +TGI + ++ +
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK----------VFSLDPQYLVDDL 268
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
+ GY +K + +LA + G L +G T+ V+RVW T +
Sbjct: 269 RPEFAGY----SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 22/251 (8%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW----DIEAALAPSKSGDA---MEDDC 173
TL H+ +VT LA + N++ S + W D + P +S + DC
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
+ +G+ +L + +T+ + + T Q +V GHK V ++ ++ ++++
Sbjct: 72 TLTADGA-YALSASWDKTLRLWDVATGETYQR--FV-----GHKSDVMSVDIDKKASMII 123
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL------DSTGRYCLSGSSDSMIRLWD 287
SG +K ++VW + G L GH D + + + D +S +D M++ W+
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347
L Q + + H ++ L ++P + + S G+D + L +LA ++++ + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242
Query: 348 LALHDDNIWVA 358
LA + W+A
Sbjct: 243 LAFSPNRYWLA 253
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 103/263 (39%), Gaps = 50/263 (19%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
+ L + SRD TL W L D G +F+ H V D L D +S S D TL+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ T R + SD ++ +K ++++ SG + +W I+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
C + G + V+ +R + + + +D
Sbjct: 139 ---QCLATLLGHNDW--VSQVRVVPNEKA----------------------------DDD 165
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++S G +K+V+ W+ GH NI +L G S D I LW+L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 289 GQQRCIHSYAVHTDSVWALASTP 311
++ +++ + D V++LA +P
Sbjct: 226 AAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 40/229 (17%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN------ 96
V+ + + +GSRD T+K W++ G C AT H DWV+ +V +
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
T++S +D +K WN + + +S+ T A+ + ++AS G E+ +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWN 224
Query: 156 IEA--------------ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201
+ A +LA S + + +TGI + ++ +
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK----------VFSLDPQYLVDDL 274
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
+ GY +K + +LA + G L +G T+ V+RVW T +
Sbjct: 275 RPEFAGY----SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 22/251 (8%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW----DIEAALAPSKSGDA---MEDDC 173
TL H+ +VT LA + N++ S + W D + P +S + DC
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
+ +G+ +L + +T+ + + T Q +V GHK V ++ ++ ++++
Sbjct: 72 TLTADGA-YALSASWDKTLRLWDVATGETYQR--FV-----GHKSDVMSVDIDKKASMII 123
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL------DSTGRYCLSGSSDSMIRLWD 287
SG +K ++VW + G L GH D + + + D +S +D M++ W+
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347
L Q + + H ++ L ++P + + S G+D + L +LA ++++ + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242
Query: 348 LALHDDNIWVA 358
LA + W+A
Sbjct: 243 LAFSPNRYWLA 253
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 103/263 (39%), Gaps = 50/263 (19%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
+ L + SRD TL W L D G +F+ H V D L D +S S D TL+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ T R + SD ++ +K ++++ SG + +W I+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
C + G + V+ +R + + + +D
Sbjct: 139 ---QCLATLLGHNDW--VSQVRVVPNEKA----------------------------DDD 165
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++S G +K+V+ W+ GH NI +L G S D I LW+L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 289 GQQRCIHSYAVHTDSVWALASTP 311
++ +++ + D V++LA +P
Sbjct: 226 AAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 40/229 (17%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN------ 96
V+ + + +GSRD T+K W++ G C AT H DWV+ +V +
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
T++S +D +K WN + + +S+ T A+ + ++AS G E+ +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWN 224
Query: 156 IEA--------------ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201
+ A +LA S + + +TGI + ++ +
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK----------VFSLDPQYLVDDL 274
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
+ GY +K + +LA + G L +G T+ V+RVW T +
Sbjct: 275 RPEFAGY----SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 22/251 (8%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW----DIEAALAPSKSGDA---MEDDC 173
TL H+ +VT LA + N++ S + W D + P +S + DC
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
+ +G+ +L + +T+ + + T Q +V GHK V ++ ++ ++++
Sbjct: 72 TLTADGA-YALSASWDKTLRLWDVATGETYQR--FV-----GHKSDVMSVDIDKKASMII 123
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL------DSTGRYCLSGSSDSMIRLWD 287
SG +K ++VW + G L GH D + + + D +S +D M++ W+
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347
L Q + + H ++ L ++P + + S G+D + L +LA ++++ + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242
Query: 348 LALHDDNIWVA 358
LA + W+A
Sbjct: 243 LAFSPNRYWLA 253
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 103/263 (39%), Gaps = 50/263 (19%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
+ L + SRD TL W L D G +F+ H V D L D +S S D TL+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ T R + SD ++ +K ++++ SG + +W I+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
C + G + V+ +R + + + +D
Sbjct: 139 ---QCLATLLGHNDW--VSQVRVVPNEKA----------------------------DDD 165
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++S G +K+V+ W+ GH NI +L G S D I LW+L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 289 GQQRCIHSYAVHTDSVWALASTP 311
++ +++ + D V++LA +P
Sbjct: 226 AAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 40/229 (17%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN------ 96
V+ + + +GSRD T+K W++ G C AT H DWV+ +V +
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
T++S +D +K WN + + +S+ T A+ + ++AS G E+ +W+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWN 224
Query: 156 IEA--------------ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201
+ A +LA S + + +TGI + ++ +
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK----------VFSLDPQYLVDDL 274
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
+ GY AA+ H S LA + G L +G T+ V+RVW T +
Sbjct: 275 RPEFAGY-SAAAEPHAVS---LAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 48/261 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVND-AVLVGDNTLVSCSSDTTLKTWN 111
+++ GS D ++ ++ + G FE+H D++ AV ++S S D T+K WN
Sbjct: 68 NWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
++ +T H +V C+A K+ + ASG L V +W +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------------- 170
Query: 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231
G S P +L T G ++ Y P+ K +
Sbjct: 171 ---------GQSTPNFTL-TTGQERGVNY-----VDYYPLPDKPY--------------- 200
Query: 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ 291
+++ + +++WD +T S L GH N+ + T +SGS D +++W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 292 RCIHSYAVHTDSVWALASTPT 312
+ + V + W +A+ PT
Sbjct: 261 KVEKTLNVGLERSWCIATHPT 281
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289
N ++ G + +RV++ TG K + H D IRS+ + T Y LSGS D ++LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 290 QQRCI-HSYAVHTDSVWALASTPTFSHVYSGG 320
+ ++ H V +A P ++ G
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH 300
V +W+ T + ++ +R+ + + + GS D IR+++ + + H
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 301 TDSVWALASTPTFSHVYSGGRDLSLYLTD----------LATRESLLLCTGEHP 344
D + ++A PT +V SG DL++ L + E ++C +P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 48/261 (18%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVND-AVLVGDNTLVSCSSDTTLKTWN 111
+++ GS D ++ ++ + G FE+H D++ AV ++S S D T+K WN
Sbjct: 68 NWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171
++ +T H +V C+A K+ + ASG L V +W +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------------- 170
Query: 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231
G S P +L T G ++ Y P+ K +
Sbjct: 171 ---------GQSTPNFTL-TTGQERGVNY-----VDYYPLPDKPY--------------- 200
Query: 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ 291
+++ + +++WD +T S L GH N+ + T +SGS D +++W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 292 RCIHSYAVHTDSVWALASTPT 312
+ + V + W +A+ PT
Sbjct: 261 KVEKTLNVGLERSWCIATHPT 281
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289
N ++ G + +RV++ TG K + H D IRS+ + T Y LSGS D ++LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 290 QQRCI-HSYAVHTDSVWALASTPTFSHVYSGG 320
+ ++ H V +A P ++ G
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH 300
V +W+ T + ++ +R+ + + + GS D IR+++ + + H
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 301 TDSVWALASTPTFSHVYSGGRDLSLYLTD----------LATRESLLLCTGEHP 344
D + ++A PT +V SG DL++ L + E ++C +P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 59/250 (23%)
Query: 59 SRDGTLKRWSLADDVGSCSATF-------ESHVDWVNDAVLVGD-NTLVSCSSDTTLKTW 110
SRD TL W D S ++ E H +V+D L + N VS S D +L+ W
Sbjct: 35 SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW 94
Query: 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
N +G C H+ V +A + N IV SGG + +W+++ G+ M
Sbjct: 95 NLQ-NGQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVK--------GECM- 143
Query: 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-- 228
HT ++ H + V + + S
Sbjct: 144 ------------------------------HT--------LSRGAHTDWVSCVRFSPSLD 165
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++VSGG + +V+VWD TG L+GHT+ + S+ + G C S D + RLWDL
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 289 GQQRCIHSYA 298
+ + A
Sbjct: 226 TKGEALSEMA 235
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG-HTDNIRSLLLDST--G 271
GH + V ++A + +VSGG + +RVW+ + RG HTD + + +
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331
+SG D+++++WDL R + HT+ V ++ +P S S +D L DL
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 332 TRESLLLCTGEHPILQLALHDDNIWV-ATTDSSVHRWPAEGRN 373
E+L PI Q+ + W+ A T+ + + E ++
Sbjct: 227 KGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKD 269
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 215 GHKESVYALA---MNDSGNLLVSGGTEKVVRVWDPR---------TGSKTIKLRGHTDNI 262
GH+ V +LA ++ +VS +K + W P G +L GH+ +
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD 322
+ L + G + +S S D +RLW+L +C + + HT V ++A +P + SGGRD
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 323 LSLYLTDLATRESLLLCTGEH 343
+L + ++ L G H
Sbjct: 131 NALRVWNVKGECMHTLSRGAH 151
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 47 SVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT 105
++SN ++ + S D +L+ W+L + G C F H V DN +VS D
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQN--GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDN 131
Query: 106 TLKTWNCSSDGTCIRTLRQ--HSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDI------ 156
L+ WN G C+ TL + H+D+V+C+ + ++ ++ SGG V +WD+
Sbjct: 132 ALRVWNVK--GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 157 -----------------EAALAPS--KSGDAMEDDCSTG--INGSGNSLPVTSL------ 189
+ +L S K G A D + G ++ P+ +
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNR 249
Query: 190 --RTIGSSNSISAHTSQSQGYVPIAAKGHKES------VYALAMNDSGNLLVSGGTEKVV 241
+ I +++ + A H+ S ++A + G+ L SG T+ V+
Sbjct: 250 YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVI 309
Query: 242 RVW 244
RVW
Sbjct: 310 RVW 312
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270
+ + H ++VY + G + S G +K ++V+ TG K + ++ H D + S
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY--SGGRDLSLYLT 328
Y + S+D +++WD + +H+Y H++ V T +H+ +G D L L
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 329 DLATRE 334
DL +E
Sbjct: 736 DLNQKE 741
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 96/256 (37%), Gaps = 43/256 (16%)
Query: 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVL 92
+H +NC ++ SN + L TGS D LK W L + C T H + VN
Sbjct: 704 EHSEQVNCCHF--TNKSNHL-LLATGSNDFFLKLWDL--NQKECRNTMFGHTNSVNHCRF 758
Query: 93 VGDNTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEV 151
D+ L+ SCS+D TL+ W+ S A E+ S V L +E
Sbjct: 759 SPDDELLASCSADGTLRLWDVRS-------------------ANERKSINVKRFFLSSE- 798
Query: 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211
P + + + CS +G + + N + + G +
Sbjct: 799 ---------DPPEDVEVIVKCCSWSADGDK--------IIVAAKNKVLLFDIHTSGLLAE 841
Query: 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271
GH ++ + +L V ++ V +W+ + K RGH + ++ G
Sbjct: 842 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 901
Query: 272 RYCLSGSSDSMIRLWD 287
L+ S D IR+W+
Sbjct: 902 SSFLTASDDQTIRVWE 917
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK++V + G L+S + V++VW+ +TG L+ H + ++ L R
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRL- 1065
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALA 308
LS S D +++W++ R + H +V + A
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1099
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275
H+ +V + A++ S +K ++W S +L+GH +R G
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1150
Query: 276 SGSSDSMIRLWDLGQQRCIHSYA 298
+G + IR+W++ + +HS A
Sbjct: 1151 TGDDNGEIRIWNVSDGQLLHSCA 1173
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270
+ + H ++VY + G + S G +K ++V+ TG K + ++ H D + S
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY--SGGRDLSLYLT 328
Y + S+D +++WD + +H+Y H++ V T +H+ +G D L L
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 329 DLATRE 334
DL +E
Sbjct: 729 DLNQKE 734
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 96/256 (37%), Gaps = 43/256 (16%)
Query: 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVL 92
+H +NC ++ SN + L TGS D LK W L + C T H + VN
Sbjct: 697 EHSEQVNCCHF--TNKSNHL-LLATGSNDFFLKLWDL--NQKECRNTMFGHTNSVNHCRF 751
Query: 93 VGDNTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEV 151
D+ L+ SCS+D TL+ W+ S A E+ S V L +E
Sbjct: 752 SPDDELLASCSADGTLRLWDVRS-------------------ANERKSINVKRFFLSSE- 791
Query: 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211
P + + + CS +G + + N + + G +
Sbjct: 792 ---------DPPEDVEVIVKCCSWSADGDK--------IIVAAKNKVLLFDIHTSGLLAE 834
Query: 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271
GH ++ + +L V ++ V +W+ + K RGH + ++ G
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894
Query: 272 RYCLSGSSDSMIRLWD 287
L+ S D IR+W+
Sbjct: 895 SSFLTASDDQTIRVWE 910
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GHK++V + G L+S + V++VW+ +TG L+ H + ++ L R
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRL- 1058
Query: 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALA 308
LS S D +++W++ R + H +V + A
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275
H+ +V + A++ S +K ++W S +L+GH +R G
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143
Query: 276 SGSSDSMIRLWDLGQQRCIHSYA 298
+G + IR+W++ + +HS A
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCA 1166
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 22/252 (8%)
Query: 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113
+L TG+ D ++ W + + + D GD LVS S D T++ W+
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLR 195
Query: 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAAL------APSKSGD 167
+ G C TL D VT +A + + +A+G L V +WD E + ++SG
Sbjct: 196 T-GQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 253
Query: 168 AMEDDC-STGINGSGNSLPVTSLR------TIGSSNSISAHTSQSQGYVPIAAKGHKESV 220
+D S G S+ SL + ++N+ S + + G + GHK+ V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 221 YALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLL------LDSTGRYC 274
++A + ++SG ++ V WD ++G+ + L+GH +++ S+ L
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 275 LSGSSDSMIRLW 286
+GS D R+W
Sbjct: 374 ATGSGDCKARIW 385
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268
+ + +GH++ +Y+L SG+ LVSG ++ VR+WD RTG ++ L +
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 216
Query: 269 STGRYCLSGSSDSMIRLWDLGQQRCI-------HSYAVHTDSVWALASTPTFSHVYSGGR 321
G+Y +GS D +R+WD + S H DSV+++ T V SG
Sbjct: 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276
Query: 322 DLSLYLTDLAT----RESLLLCTGEHPILQLALHDDNIWVATT-----------DSSVHR 366
D S+ L +L +S +G + + D + VATT D V
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336
Query: 367 WPAEGRNPQKVFQ 379
W + NP + Q
Sbjct: 337 WDKKSGNPLLMLQ 349
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 220 VYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS 279
+ ++ + G L +G ++++R+WD + L+GH +I SL +G +SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 280 DSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311
D +R+WDL +C + ++ D V +A +P
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSP 216
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR 321
IRS+ G++ +G+ D +IR+WD+ ++ + H +++L P+ + SG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 322 DLSLYLTDLATRESLLLCTGEHPILQLALH-DDNIWVA--TTDSSVHRWPAE 370
D ++ + DL T + L + E + +A+ D ++A + D +V W +E
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 13/256 (5%)
Query: 50 NGVDYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDT 105
+ D + + SRD ++ W L D G H +V D VL D +S S D
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452
Query: 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI--EAALAPS 163
L+ W+ ++ G R H+ V +A + N IV S + +W+ E S
Sbjct: 453 ELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTIS 510
Query: 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYAL 223
+ G+ D S + S N+L T + + S + +A GH V +
Sbjct: 511 EGGEGHRDWVSC-VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--GHTGYVSTV 567
Query: 224 AMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMI 283
A++ G+L SGG + VV +WD G K L ++ + L S RY L +++ I
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS--VIHALCFSPNRYWLCAATEHGI 625
Query: 284 RLWDLGQQRCIHSYAV 299
++WDL + + V
Sbjct: 626 KIWDLESKSIVEDLKV 641
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 79 TFESHVDWVNDAVLVGDNT--LVSCSSDTTLKTWNCSSD----GTCIRTLRQHSDYVTCL 132
T +H D V DN +VS S D ++ W + D G R L HS +V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 133 AAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL-RT 191
+ + SG E+ +WD+ A ++ + +D S + + S RT
Sbjct: 437 VLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 192 IGSSNSISAHTSQSQGYVPIAAKGHKE--SVYALAMNDSGNLLVSGGTEKVVRVWDPRTG 249
I N++ + + + +GH++ S + N +VS +K V+VW+
Sbjct: 496 IKLWNTLG----ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 250 SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS 296
L GHT + ++ + G C SG D ++ LWDL + + ++S
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 214 KGHKESVYALAMN-DSGNLLVSGGTEKVVRVW-----DPRTGSKTIKLRGHTDNIRSLLL 267
+ H + V A+A D+ +++VS +K + +W D G +L GH+ + ++L
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327
S G++ LSGS D +RLWDL + HT V ++A + + S RD ++ L
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 109/279 (39%), Gaps = 47/279 (16%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180
T+R H+D VT +A N++I+ S + +W + +DD + G
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL------------TKDDKAYG---- 420
Query: 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK--------------------GHKESV 220
V R G S+ + S G ++ GH + V
Sbjct: 421 -----VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
Query: 221 YALAMNDSGNLLVSGGTEKVVRVWDPRTGSK-TIKL--RGHTDNIRSLLL--DSTGRYCL 275
++A + +VS ++ +++W+ K TI GH D + + ++ +
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535
Query: 276 SGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES 335
S S D +++W+L + + A HT V +A +P S SGG+D + L DLA +
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Query: 336 LLLCTGEHPILQLALHDDNIWV-ATTDSSVHRWPAEGRN 373
L I L + W+ A T+ + W E ++
Sbjct: 596 LYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 111/251 (44%), Gaps = 22/251 (8%)
Query: 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW----DIEAALAPSKSGDA---MEDDC 173
TL H+ +VT LA + N++ S + W D + P +S + DC
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233
+ +G+ +L + +T+ + + T Q +V GHK V ++ ++ + ++
Sbjct: 72 TLTADGA-YALSASWDKTLRLWDVATGETYQR--FV-----GHKSDVXSVDIDKKASXII 123
Query: 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL------DSTGRYCLSGSSDSMIRLWD 287
SG +K ++VW + G L GH D + + + D +S +D ++ W+
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347
L Q + + H ++ L ++P + + S G+D + L +LA +++ + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS 242
Query: 348 LALHDDNIWVA 358
LA + W+A
Sbjct: 243 LAFSPNRYWLA 253
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 99/263 (37%), Gaps = 50/263 (19%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
+ L + SRD TL W L D G +F+ H V D L D +S S D TL+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ T R + SD + +K ++ + SG + +W I+
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSV--DIDKKASXIISGSRDKTIKVWTIKG---------- 138
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
C + G + V+ +R + + + +D
Sbjct: 139 ---QCLATLLGHNDW--VSQVRVVPNEKA----------------------------DDD 165
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
++S G +K V+ W+ GH NI +L G S D I LW+L
Sbjct: 166 SVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Query: 289 GQQRCIHSYAVHTDSVWALASTP 311
++ ++ + D V++LA +P
Sbjct: 226 AAKKAXYTLSAQ-DEVFSLAFSP 247
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-------TLVSCSSDTTL 107
+ +GSRD T+K W++ G C AT H DWV+ +V + T++S +D +
Sbjct: 122 IISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV 178
Query: 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGD 167
K WN + + +S+ T A+ + ++AS G E+ +W++ AA +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIXLWNL-AAKKAXYTLS 235
Query: 168 AMEDDCSTGINGSGNSLPVTS-----LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYA 222
A ++ S + + L + + ++ + + GY +K + +
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY----SKAAEPHAVS 291
Query: 223 LAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
LA + G L +G T+ V+RVW T +
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVWQVXTAN 319
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 43/256 (16%)
Query: 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVL 92
+H +NC SS L TGS D LK W L + C T H + VN
Sbjct: 703 EHSEQVNCCHFTNSSHHL---LLATGSSDCFLKLWDL--NQKECRNTMFGHTNSVNHCRF 757
Query: 93 VGDNTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEV 151
D+ L+ SCS+D TLK W+ +S A E+ S + +
Sbjct: 758 SPDDKLLASCSADGTLKLWDATS-------------------ANERKS-------INVKQ 791
Query: 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211
F ++E P + + + CS +G+ + + N I + G +
Sbjct: 792 FFLNLED---PQEDMEVIVKCCSWSADGAR--------IMVAAKNKIFLFDIHTSGLLGE 840
Query: 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271
GH ++ + +L V ++ V +W+ + SK RGH + ++ G
Sbjct: 841 IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDG 900
Query: 272 RYCLSGSSDSMIRLWD 287
L+ S D IRLW+
Sbjct: 901 SSFLTSSDDQTIRLWE 916
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270
+ + H ++VY ++ G + S G +K ++V+ TG K ++++ H D + +
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY--SGGRDLSLYLT 328
R+ + S D +++W+ +H+Y H++ V T + H+ +G D L L
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 329 DLATRE 334
DL +E
Sbjct: 735 DLNQKE 740
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275
HK++V+ + L+S + ++VW+ + K I LRGH + ++ L R L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQL-DKCIFLRGHQETVKDFRLLKNSRL-L 1065
Query: 276 SGSSDSMIRLWDL 288
S S D +++W++
Sbjct: 1066 SWSFDGTVKVWNI 1078
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
Query: 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270
I +GH+E+V + + LL S + V+VW+ TG+K H + S +
Sbjct: 1044 IFLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHD 1102
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330
S S+D ++W +H H V A + + + +G + + + ++
Sbjct: 1103 ATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Query: 331 ATRESLLLC 339
+ E L LC
Sbjct: 1163 SNGELLHLC 1171
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154
+ TL+S S D ++ WN D CI LR H + V KNS ++ S V +W
Sbjct: 1021 EKTLISSSDDAEIQVWNWQLD-KCI-FLRGHQETVKDFRLL-KNSRLL-SWSFDGTVKVW 1076
Query: 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI-AA 213
+I + +K D + C G S + + + + +S +A +P+
Sbjct: 1077 NI---ITGNKEKDFV---CHQGTVLSCD-ISHDATKFSSTSADKTAKIWSFDLLLPLHEL 1129
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG 249
+GH V A + LL +G +R+W+ G
Sbjct: 1130 RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG 1165
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 34/243 (13%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS 114
+ +G RD T+K W + C H V + + +++ SSD+T++ W+ ++
Sbjct: 146 IVSGLRDNTIKIWD--KNTLECKRILTGHTGSVL-CLQYDERVIITGSSDSTVRVWDVNT 202
Query: 115 DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI---------EAALAPSKS 165
G + TL H + V L N+ ++ + + +WD+ + +
Sbjct: 203 -GEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 166 GDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM 225
+ ++ D ++ SG+ RTI N+ + ++ GHK + L
Sbjct: 259 VNVVDFDDKYIVSASGD-------RTIKVWNTSTCEFVRT-------LNGHKRGIACLQY 304
Query: 226 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRL 285
D L+VSG ++ +R+WD G+ L GH + +R + D+ + +SG+ D I++
Sbjct: 305 RD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKV 360
Query: 286 WDL 288
WDL
Sbjct: 361 WDL 363
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 17/212 (8%)
Query: 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154
D +VS D T+K W+ + C R L H+ V CL E+ ++ +G + V +W
Sbjct: 143 DQKIVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQYDER---VIITGSSDSTVRVW 198
Query: 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI--A 212
D+ + + + C ++ N+ + T SI+ S + +
Sbjct: 199 DVNTG----EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 213 AKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR 272
GH+ +V + +D +VS ++ ++VW+ T L GH I L R
Sbjct: 252 LVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDR 307
Query: 273 YCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV 304
+SGSSD+ IRLWD+ C+ H + V
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 24/273 (8%)
Query: 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWD 245
+ + TI S+ H+ Q +KG VY L +D +VSG + +++WD
Sbjct: 106 IQDIETIESNWRCGRHSLQRIHCRSETSKG----VYCLQYDDQK--IVSGLRDNTIKIWD 159
Query: 246 PRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVW 305
T L GHT ++ L D R ++GSSDS +R+WD+ +++ H ++V
Sbjct: 160 KNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
Query: 306 ALASTPTFSHVYSGGRDLSLY----LTDLATRESLLLCTGEHPILQLALHDDNIWV-ATT 360
L S R ++++ TD+ R L+ G + + DD V A+
Sbjct: 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV---GHRAAVNVVDFDDKYIVSASG 274
Query: 361 DSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNF-----TI 415
D ++ W + IA L + R R+ + GS+ + R + +
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGIAC-LQY-RDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 416 PGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448
G +V+ +N+R +++ G +K+W++
Sbjct: 333 EGHEELVRCIRFDNKR-IVSGAYDGKIKVWDLV 364
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 54 YLFTGSRDGTLKRWSLADDVGSCS--ATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWN 111
Y+ + S D T+K W + +C T H + + D +VS SSD T++ W+
Sbjct: 268 YIVSASGDRTIKVW----NTSTCEFVRTLNGHKRGIA-CLQYRDRLVVSGSSDNTIRLWD 322
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162
G C+R L H + V C+ K + SG ++ +WD+ AAL P
Sbjct: 323 IEC-GACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDP 369
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270
I GH+ + + N G+LL S + VW G + L GHT I S+ +D
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCI 294
+YC++GS+D I+LWD+ +C+
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCV 109
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 251 KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST 310
K IKL GH + + + G S S DS +W + + HT ++W++
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
Query: 311 PTFSHVYSGGRDLSLYLTDLA 331
+ +G D S+ L D++
Sbjct: 84 CFTKYCVTGSADYSIKLWDVS 104
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 54/211 (25%)
Query: 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271
A +GH V + ++ G +SG + +R+WD TG+ T + GHT ++ S+ S
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 272 RYCLSGSSDSMIRLWD-LGQQRCIHSYAVHTDS--------------------------- 303
R +SGS D I+LW+ LG + Y V +S
Sbjct: 141 RQIVSGSRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196
Query: 304 --VWALAS-------------------TPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE 342
VW LA+ +P S SGG+D L DL + L G
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 343 HPILQLALHDDNIWV-ATTDSSVHRWPAEGR 372
I L + W+ A T S+ W EG+
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGK 287
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 101/245 (41%), Gaps = 58/245 (23%)
Query: 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTT 106
+S+ + +GS DGTL+ W L G+ + F H V DN +VS S D T
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLT--TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 107 LKTWNCSSDGTCIRTLR--QHSDYVTCLAAAEKNSN-IVASGGLGAEVFIWDIEAALAPS 163
+K WN + G C T++ HS++V+C+ + +SN I+ S G V +W++
Sbjct: 152 IKLWN--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------ 203
Query: 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYAL 223
+C L+T N I GH + +
Sbjct: 204 --------NC--------------KLKT----NHI----------------GHTGYLNTV 221
Query: 224 AMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMI 283
++ G+L SGG + +WD G L G +I + L S RY L ++ I
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSI 279
Query: 284 RLWDL 288
++WDL
Sbjct: 280 KIWDL 284
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 55/250 (22%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
D + + SRD T+ W L D G H +V+D V+ D +S S D TL+
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ GT R H+ V +A + N IV SG + +W+
Sbjct: 112 LWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN------------- 156
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM--N 226
T+G + +T Q + H E V + N
Sbjct: 157 ----------------------TLG----VCKYTVQDES--------HSEWVSCVRFSPN 182
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286
S ++VS G +K+V+VW+ GHT + ++ + G C SG D LW
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 287 DLGQQRCIHS 296
DL + + +++
Sbjct: 243 DLNEGKHLYT 252
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF--ESHVDWVNDAVLVGDNT--- 97
VL + S+ + +GSRD T+K W + +G C T ESH +WV+ +++
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLW---NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQ--HSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
+VSC D +K WN ++ C H+ Y+ + + S + ASGG + +WD
Sbjct: 188 IVSCGWDKLVKVWNLAN---CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWD 243
Query: 156 IEAA--LAPSKSGDAMEDDCSTG-----INGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208
+ L GD + C + +G S+ + L + + Q
Sbjct: 244 LNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL------KQEV 297
Query: 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK 251
+ ++K +LA + G L +G T+ +VRVW G++
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 54/211 (25%)
Query: 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271
A +GH V + ++ G +SG + +R+WD TG+ T + GHT ++ S+ S
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 272 RYCLSGSSDSMIRLWD-LGQQRCIHSYAVHTDS--------------------------- 303
R +SGS D I+LW+ LG + Y V +S
Sbjct: 118 RQIVSGSRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 173
Query: 304 --VWALAS-------------------TPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE 342
VW LA+ +P S SGG+D L DL + L G
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 343 HPILQLALHDDNIWV-ATTDSSVHRWPAEGR 372
I L + W+ A T S+ W EG+
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGK 264
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 101/245 (41%), Gaps = 58/245 (23%)
Query: 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTT 106
+S+ + +GS DGTL+ W L G+ + F H V DN +VS S D T
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLT--TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 107 LKTWNCSSDGTCIRTLR--QHSDYVTCLAAAEKNSN-IVASGGLGAEVFIWDIEAALAPS 163
+K WN + G C T++ HS++V+C+ + +SN I+ S G V +W++
Sbjct: 129 IKLWN--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------ 180
Query: 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYAL 223
+C L+T N I GH + +
Sbjct: 181 --------NC--------------KLKT----NHI----------------GHTGYLNTV 198
Query: 224 AMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMI 283
++ G+L SGG + +WD G L G +I + L S RY L ++ I
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSI 256
Query: 284 RLWDL 288
++WDL
Sbjct: 257 KIWDL 261
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 55/250 (22%)
Query: 53 DYLFTGSRDGTLKRWSLADD---VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
D + + SRD T+ W L D G H +V+D V+ D +S S D TL+
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ ++ GT R H+ V +A + N IV SG + +W+
Sbjct: 89 LWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN------------- 133
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM--N 226
T+G + +T Q + H E V + N
Sbjct: 134 ----------------------TLG----VCKYTVQDES--------HSEWVSCVRFSPN 159
Query: 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286
S ++VS G +K+V+VW+ GHT + ++ + G C SG D LW
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 287 DLGQQRCIHS 296
DL + + +++
Sbjct: 220 DLNEGKHLYT 229
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF--ESHVDWVNDAVLVGDNT--- 97
VL + S+ + +GSRD T+K W + +G C T ESH +WV+ +++
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLW---NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQ--HSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
+VSC D +K WN ++ C H+ Y+ + + S + ASGG + +WD
Sbjct: 165 IVSCGWDKLVKVWNLAN---CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWD 220
Query: 156 IEAA--LAPSKSGDAMEDDCSTG-----INGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208
+ L GD + C + +G S+ + L + + Q
Sbjct: 221 LNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL------KQEV 274
Query: 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK 251
+ ++K +LA + G L +G T+ +VRVW G++
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 84 VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTC---LAAAEKNSN 140
+DW D +VS S D + W+ T ++H+ + C +A A S
Sbjct: 70 MDWCKDK-----RRIVSSSQDGKVIVWDS------FTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 141 I-VASGGLGAEVFIW----DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195
+A GGL + ++ D +A K AM + + + + + + + + S
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT----ASG 174
Query: 196 NSISAHTSQSQGYVPIAAKGHKESVYAL--AMNDSGNLLVSGGTEKVVRVWDPRTGSKTI 253
+ A G + + GH V L A +++GN VSGG +K VWD R+G
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 254 KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF 313
H ++ S+ +G SGS D+ RL+DL R + Y+ +S+ AS+ F
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS--KESIIFGASSVDF 292
Query: 314 S----HVYSGGRDLSLYLTDL--ATRESLLL 338
S +++G D ++ + D+ +R S+L
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 37/246 (15%)
Query: 120 RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD-----------------IEAALAP 162
RTL+ H + V C+ + IV+S G +V +WD + A AP
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDG-KVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYA 222
S C+ G N V L + N + S + H + A
Sbjct: 117 SG--------CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM---------HTNYLSA 159
Query: 223 LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL--DSTGRYCLSGSSD 280
+ +S +++ + +WD +G GH ++ L L TG +SG D
Sbjct: 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 281 SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT 340
+WD+ +C+ ++ H V ++ P+ SG D + L DL + + +
Sbjct: 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279
Query: 341 GEHPIL 346
E I
Sbjct: 280 KESIIF 285
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 12/196 (6%)
Query: 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCL-AAAEKNSNIVASGGLGAEVFI 153
D +++ S D T W+ S G +++ H V CL A + N SGG + +
Sbjct: 166 DMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA 213
WD+ + D S SG++ S+ + + +A
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFA-------SGSDDATCRLYDLRADREVAI 277
Query: 214 KGHKESVYALAMND---SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270
+ ++ + D SG LL +G + + VWD GS+ L GH + + +L +
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 271 GRYCLSGSSDSMIRLW 286
G SGS D +R+W
Sbjct: 338 GTAFCSGSWDHTLRVW 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 50/276 (18%)
Query: 97 TLVSCSSDTTLKTWNCSSDGTCIR-TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
T+V+ S D +K W + ++ +L H V + + I AS L A + +WD
Sbjct: 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWD 108
Query: 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG 215
+E KS DA D T + S +S + + +G N + + + + K
Sbjct: 109 LENG-KQIKSIDAGPVDAWT-LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK- 165
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275
+ ++A + G L SG + ++ ++D TG L GH IRSL + +
Sbjct: 166 ---FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 276 SGSSDSMIRL------------------------------------------WDLGQQRC 293
+ S D I++ WD+G + C
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
Query: 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTD 329
+H++ H D VW + S + S G D +++ D
Sbjct: 283 VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 115/298 (38%), Gaps = 47/298 (15%)
Query: 55 LFTGSRDGTLKRWSLADD-----VGSCSATFESHVDWVNDAVLVGDNTL-VSCSSDTTLK 108
L +GSRD T+ W L ++ G H +V+D L +N +S S D TL+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168
W+ + GT + H V +A + N I+ S G E+ +W+I L K A
Sbjct: 102 LWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI---LGECKFSSA 156
Query: 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228
+++ S V+ +R Y PI +K +A
Sbjct: 157 EKENHSDW---------VSCVR-----------------YSPIMKSANKVQPFA------ 184
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
S G + ++VW+ + + H N+ L + G+Y +G D + +WD+
Sbjct: 185 -PYFASVGWDGRLKVWNTNFQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Query: 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE-HPI 345
++ +A P V + G D + + +L T+ +CT E PI
Sbjct: 243 LNLTYPQREFDAGSTINQIAFNPKLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPI 299
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 34/220 (15%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVN----DAVLVGDNT-------LVSCSS 103
+ + + +K W++ + SA E+H DWV+ ++ N S
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 104 DTTLKTWNCSSDGTCIR-TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162
D LK WN + IR T + H V L+ + N +A+GG ++ IWDI P
Sbjct: 193 DGRLKVWNTNFQ---IRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYP 248
Query: 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI----------- 211
+ DA N P +G+ + +Q P+
Sbjct: 249 QREFDAGSTINQIAFN------PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302
Query: 212 -AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250
KG +LA N G L +G T+ V+R + T +
Sbjct: 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 221 YALAMNDSGNLLVSGGTEKVVRVW----DPRTGSKTI---KLRGHTDNIRSLLLDSTGRY 273
++ N+ +L+SG +K V +W + + G I L GH + L L +
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330
+S S D +RLWDL + H V+++A +P + S G + + L ++
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 26/230 (11%)
Query: 76 CSATFESH------VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYV 129
C T + H +DW + N +VS S D L WN + ++ H +V
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEK-----NWIVSASQDGRLIVWNALTSQK-THAIKLHCPWV 111
Query: 130 TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS---LPV 186
A A N VA GGL + I+++ + + G+ TG G +S +P
Sbjct: 112 MECAFA-PNGQSVACGGLDSACSIFNLSSQ--ADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 187 TSLRTI---GSSNSISAHTSQSQGYVPIAAK---GHKESVYALAMND-SGNLLVSGGTEK 239
R I G + + Q ++ GH V +L++N + N+ +SG +
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 240 VVRVWDPRTGSKTIK-LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288
VR+WD R S+ ++ GH +I S+ G+ +GS D RL+D+
Sbjct: 229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 22/184 (11%)
Query: 125 HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST--------- 175
H+ V L+ N+N+ SG V +WD+ ++ E D ++
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 176 -GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234
G + + +RT H Q P V ++A + SG LL +
Sbjct: 264 FGTGSDDGTCRLFDMRT--------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315
Query: 235 GGTEKVVRVWDPRTGSKTIKL----RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ 290
G + VWD + L H I L L S G +GS D +++W
Sbjct: 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Query: 291 QRCI 294
R I
Sbjct: 376 HRKI 379
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 21/173 (12%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
+GH VY+L N +VS + + VW+ T KT ++ H + G+
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 274 CLSGSSDSMIRLWDLGQQ----------RCIHSYAVHTDSVWALASTPTFSHVYSGGRDL 323
G DS +++L Q R + + + S + T + +G D
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET--RLITGSGDQ 180
Query: 324 SLYLTDLATRESLLLCTGEHP------ILQLALH--DDNIWVA-TTDSSVHRW 367
+ L D+ T + + + E P +L L+++ + N++++ + D++V W
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 255 LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314
L+GH+ + SL + +S S D + +W+ + H+ +H V A P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 315 HVYSGGRDLSLYLTDLATR 333
V GG D + + +L+++
Sbjct: 122 SVACGGLDSACSIFNLSSQ 140
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
+ H + L SG L+S + +++W + GS L GH + + + GR
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSY 297
LS S D IRLW+ G IH++
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTF 219
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 34/201 (16%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L+S S D LK W+ DG+ RTL H VT +A ++ N++ S L + +W
Sbjct: 154 LISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW--- 208
Query: 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK 217
+C TG T++ T + + +V + H+
Sbjct: 209 --------------ECGTG----------TTIHTFNRKENPHDGVNSIALFVGTDRQLHE 244
Query: 218 ESVYA---LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-RGHTDNIRSLLLD-STGR 272
S L G +++G V+ V + + +TI+L T + SL +D +
Sbjct: 245 ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNAN 304
Query: 273 YCLSGSSDSMIRLWDLGQQRC 293
Y +G + M+ WDL C
Sbjct: 305 YIYAGYENGMLAQWDLRSPEC 325
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
+ H + L SG L+S + +++W + GS L GH + + + GR
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 274 CLSGSSDSMIRLWDLGQQRCIHSY 297
LS S D IRLW+ G IH++
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTF 216
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 34/201 (16%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L+S S D LK W+ DG+ RTL H VT +A ++ N++ S L + +W
Sbjct: 151 LISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW--- 205
Query: 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK 217
+C TG T++ T + + +V + H+
Sbjct: 206 --------------ECGTG----------TTIHTFNRKENPHDGVNSIALFVGTDRQLHE 241
Query: 218 ESVYA---LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-RGHTDNIRSLLLD-STGR 272
S L G +++G V+ V + + +TI+L T + SL +D +
Sbjct: 242 ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNAN 301
Query: 273 YCLSGSSDSMIRLWDLGQQRC 293
Y +G + M+ WDL C
Sbjct: 302 YIYAGYENGMLAQWDLRSPEC 322
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 207 GYVPIAAKGHKES-VYALAMNDSGNLLVSGGTEKVVRVWDPRTGS---KTIKLRGHTDNI 262
G VP H +S + LA N +G LL S G ++ +R+W S K++ GH +
Sbjct: 9 GRVP----AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQQ--RCIHSYAVHTDSVWALASTPTFSHVYSGG 320
R + G Y S S D+ +W Q C+ + H + V ++A P+ + + +
Sbjct: 65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 124
Query: 321 RDLSLYLTDL 330
RD S+++ ++
Sbjct: 125 RDKSVWVWEV 134
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 96 NTLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154
N L S S D T W + D C+ TL H + V +A A + N++A+ V++W
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVW 132
Query: 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSL------PVTSLRTIGS-SNSISAHTSQSQG 207
+++ + E +C + +N + P L S +++ + +
Sbjct: 133 EVD---------EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Query: 208 YVPIAA-KGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244
+V A +GH+ +V++LA + SG L S ++ VR+W
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVW--DPRTGSKTIK-LRGHTDNIRSLLLDST 270
+GH+ V ++A SGNLL + +K V VW D + + L HT +++ ++ +
Sbjct: 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161
Query: 271 GRYCLSGSSDSMIRLWDLGQQR--CIHSYAVHTDSVWALASTPTFSHVYSGG--RDLSLY 326
S S D ++L+ + C + H +VW+LA P+ + S R + ++
Sbjct: 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Query: 327 LTDLATRESLLLCTGEHP 344
L E + C+G P
Sbjct: 222 RQYLPGNEQGVACSGSDP 239
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 14/187 (7%)
Query: 187 TSLRTIGSSNSISAHTSQSQGYV--PIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244
T L + G I ++ ++ + ++GH+ +V +A + GN L S + +W
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 245 DPRTG--SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ---RCIHSYAV 299
L GH + ++S+ +G + S D + +W++ ++ C+
Sbjct: 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 300 HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVAT 359
HT V + P+ + S D ++ L E +C L H+ +W
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKL--YREEEDDWVCCA-----TLEGHESTVWSLA 201
Query: 360 TDSSVHR 366
D S R
Sbjct: 202 FDPSGQR 208
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 28/259 (10%)
Query: 120 RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI----EAALAPSKSGDAMEDDCST 175
RTLR H + + +S ++ S ++ IWD + P +S M +
Sbjct: 49 RTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM----TC 103
Query: 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235
SGN + L I S ++ T + V GH + D ++ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295
G + +WD TG +T GHT ++ SL L R +SG+ D+ +LWD+ + C
Sbjct: 162 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI---------- 345
++ H + A+ P + +G D + L DL + L+ + ++ I
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 346 ---LQLALHDD---NIWVA 358
L LA +DD N+W A
Sbjct: 281 SGRLLLAGYDDFNCNVWDA 299
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 8/237 (3%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110
+Y+ G D ++L G+ + E H +++ + DN +V+ S DTT W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
+ + T H+ V L+ A ++ + SG A +WD+ +
Sbjct: 170 DIETGQQ-TTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230
D + +GN+ S + A Q + + + +++ + SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDNIICGITSVSFSKSGR 283
Query: 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287
LL++G + VWD + L GH + + L + G +GS DS +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 28/259 (10%)
Query: 120 RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI----EAALAPSKSGDAMEDDCST 175
RTLR H + + +S ++ S ++ IWD + P +S M +
Sbjct: 49 RTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM----TC 103
Query: 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235
SGN + L I S ++ T + V GH + D ++ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295
G + +WD TG +T GHT ++ SL L R +SG+ D+ +LWD+ + C
Sbjct: 162 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI---------- 345
++ H + A+ P + +G D + L DL + L+ + ++ I
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 346 ---LQLALHDD---NIWVA 358
L LA +DD N+W A
Sbjct: 281 SGRLLLAGYDDFNCNVWDA 299
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 8/237 (3%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110
+Y+ G D ++L G+ + E H +++ + DN +V+ S DTT W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
+ + T H+ V L+ A ++ + SG A +WD+ +
Sbjct: 170 DIETGQQ-TTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230
D + +GN+ S + A Q + + + +++ + SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDNIICGITSVSFSKSGR 283
Query: 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287
LL++G + VWD + L GH + + L + G +GS DS +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 28/259 (10%)
Query: 120 RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI----EAALAPSKSGDAMEDDCST 175
RTLR H + + +S ++ S ++ IWD + P +S M +
Sbjct: 60 RTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM----TC 114
Query: 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235
SGN + L I S ++ T + V GH + D ++ S
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 172
Query: 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295
G + +WD TG +T GHT ++ SL L R +SG+ D+ +LWD+ + C
Sbjct: 173 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI---------- 345
++ H + A+ P + +G D + L DL + L+ + ++ I
Sbjct: 232 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 291
Query: 346 ---LQLALHDD---NIWVA 358
L LA +DD N+W A
Sbjct: 292 SGRLLLAGYDDFNCNVWDA 310
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 8/237 (3%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110
+Y+ G D ++L G+ + E H +++ + DN +V+ S DTT W
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
+ + T H+ V L+ A ++ + SG A +WD+ +
Sbjct: 181 DIETGQQ-TTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230
D + +GN+ S + A Q + + + +++ + SG
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDNIICGITSVSFSKSGR 294
Query: 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287
LL++G + VWD + L GH + + L + G +GS DS +++W+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 28/259 (10%)
Query: 120 RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI----EAALAPSKSGDAMEDDCST 175
RTLR H + + +S ++ S ++ IWD + P +S M +
Sbjct: 49 RTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM----TC 103
Query: 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235
SGN + L I S ++ T + V GH + D ++ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295
G + +WD TG +T GHT ++ SL L R +SG+ D+ +LWD+ + C
Sbjct: 162 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI---------- 345
++ H + A+ P + +G D + L DL + L+ + ++ I
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 346 ---LQLALHDD---NIWVA 358
L LA +DD N+W A
Sbjct: 281 SGRLLLAGYDDFNCNVWDA 299
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 8/237 (3%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110
+Y+ G D ++L G+ + E H +++ + DN +V+ S DTT W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
+ + T H+ V L+ A ++ + SG A +WD+ +
Sbjct: 170 DIETGQQ-TTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230
D + +GN+ S + A Q + + + +++ + SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDNIICGITSVSFSKSGR 283
Query: 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287
LL++G + VWD + L GH + + L + G +GS DS +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 28/259 (10%)
Query: 120 RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI----EAALAPSKSGDAMEDDCST 175
RTLR H + + +S ++ S ++ IWD + P +S M +
Sbjct: 49 RTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM----TC 103
Query: 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235
SGN + L I S ++ T + V GH + D ++ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295
G + +WD TG +T GHT ++ SL L R +SG+ D+ +LWD+ + C
Sbjct: 162 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI---------- 345
++ H + A+ P + +G D + L DL + L+ + ++ I
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 346 ---LQLALHDD---NIWVA 358
L LA +DD N+W A
Sbjct: 281 SGRLLLAGYDDFNCNVWDA 299
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 8/237 (3%)
Query: 53 DYLFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110
+Y+ G D ++L G+ + E H +++ + DN +V+ S DTT W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170
+ + T H+ V L+ A ++ + SG A +WD+ +
Sbjct: 170 DIETGQQ-TTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230
D + +GN+ S + A Q + + + +++ + SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDNIICGITSVSFSKSGR 283
Query: 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287
LL++G + VWD + L GH + + L + G +GS DS +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 26/245 (10%)
Query: 84 VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS-DGTCIRTLRQHSDYVTCLAAAEKNSNIV 142
VDW + VL + + D ++ W+ SS D + + Q +Y++ +A K N +
Sbjct: 122 VDWSSGNVL-------AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYL 173
Query: 143 ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS-SNSISAH 201
A G AEV +WD++ K M + + S NS ++S GS S I H
Sbjct: 174 AVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWNSYILSS----GSRSGHIHHH 225
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS----KTIKLRG 257
+ + GH + V L G L SGG + +V VW G
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 258 HTDNIRSLLLDSTGRYCLS---GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314
H ++++ L+ G+SD IR+W++ C+ + H+ V ++ +P +
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 344
Query: 315 HVYSG 319
+ SG
Sbjct: 345 ELISG 349
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294
G + + +W T +K +L+GHT + SL + G S ++D +RLW RC
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-----RCF 405
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 221 YALAMND--SGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSLLLDSTGRYCLS 276
Y L + D SGN+L + V +W +G + +++ + I S+ G Y
Sbjct: 117 YYLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 175
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
G+S + ++LWD+ QQ+ + + H+ V +L+ + SG R ++ D+
Sbjct: 176 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVR----- 228
Query: 337 LLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRN 373
EH + L+ H + RW +GR+
Sbjct: 229 ---VAEHHVATLSGHSQEV-------CGLRWAPDGRH 255
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 26/245 (10%)
Query: 84 VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS-DGTCIRTLRQHSDYVTCLAAAEKNSNIV 142
VDW + VL + + D ++ W+ SS D + + Q +Y++ +A K N +
Sbjct: 111 VDWSSGNVL-------AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYL 162
Query: 143 ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS-SNSISAH 201
A G AEV +WD++ K M + + S NS ++S GS S I H
Sbjct: 163 AVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWNSYILSS----GSRSGHIHHH 214
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS----KTIKLRG 257
+ + GH + V L G L SGG + +V VW G
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 258 HTDNIRSLLLDSTGRYCLS---GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314
H ++++ L+ G+SD IR+W++ C+ + H+ V ++ +P +
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 333
Query: 315 HVYSG 319
+ SG
Sbjct: 334 ELISG 338
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294
G + + +W T +K +L+GHT + SL + G S ++D +RLW RC
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-----RCF 394
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 221 YALAMND--SGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSLLLDSTGRYCLS 276
Y L + D SGN+L + V +W +G + +++ + I S+ G Y
Sbjct: 106 YYLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 164
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
G+S + ++LWD+ QQ+ + + H+ V +L+ + SG R ++ D+
Sbjct: 165 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVR----- 217
Query: 337 LLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRN 373
EH + L+ H + RW +GR+
Sbjct: 218 ---VAEHHVATLSGHSQEV-------CGLRWAPDGRH 244
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 31/255 (12%)
Query: 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS--------------KSGDAMEDDCS 174
V C + V +GG G V +WDI S +S + D C+
Sbjct: 53 VVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234
+ G ++L + L + I A + S + YALA++ + S
Sbjct: 112 LIVGGEASTLSIWDLA--APTPRIKAELTSS-----------APACYALAISPDSKVCFS 158
Query: 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294
++ + VWD + + +GHTD + + + G +G D+ +R WDL + R +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 295 HSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN 354
+ T +++L PT + G ++ + + + L E +L L
Sbjct: 219 QQHDF-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277
Query: 355 IWVATT--DSSVHRW 367
W +T D+ ++ W
Sbjct: 278 KWFVSTGKDNLLNAW 292
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 26/245 (10%)
Query: 84 VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS-DGTCIRTLRQHSDYVTCLAAAEKNSNIV 142
VDW + VL + + D ++ W+ SS D + + Q +Y++ +A K N +
Sbjct: 31 VDWSSGNVL-------AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYL 82
Query: 143 ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS-SNSISAH 201
A G AEV +WD++ K M + + S NS ++S GS S I H
Sbjct: 83 AVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWNSYILSS----GSRSGHIHHH 134
Query: 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-------SKTIK 254
+ + GH + V L G L SGG + +V VW G +
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 255 LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314
+G + S G+SD IR+W++ C+ + H+ V ++ +P +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 253
Query: 315 HVYSG 319
+ SG
Sbjct: 254 ELISG 258
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286
G + + +W T +K +L+GHT + SL + G S ++D +RLW
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 221 YALAMND--SGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSLLLDSTGRYCLS 276
Y L + D SGN+L + V +W +G + +++ + I S+ G Y
Sbjct: 26 YYLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 84
Query: 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
G+S + ++LWD+ QQ+ + + H+ V +L+ + SG R ++ D+
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVR----- 137
Query: 337 LLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRN 373
EH + L+ H + RW +GR+
Sbjct: 138 ---VAEHHVATLSGHSQEV-------CGLRWAPDGRH 164
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 119 IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE--VFIWDIEAALAPSKSGDAMEDDCSTG 176
++T QH V +A SN++A+GG ++ + IW++ + S DA CS
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSI- 246
Query: 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA----KGHKESVYALAMNDSGNLL 232
L + + S + + + Y +A KGH V +L M+ G +
Sbjct: 247 -------LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299
Query: 233 VSGGTEKVVRVW 244
S ++ +R+W
Sbjct: 300 ASAAADETLRLW 311
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY 317
H D + ++ + S+G +SGS D I++WDL QQ + SY H V +A++P V+
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATF--ESHVDWVND-AVLVGDNTLVSCSSDTTLKTWN 111
+ S G ++ W L ++ + F H D V+ +VL VS S D +K W+
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSG 166
+ + + R H+ VTC+AA+ ++ S + +WD S+ G
Sbjct: 156 LAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG 209
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYC 274
H + V +++ SG VSG + ++VWD R H + +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 275 LSGSSDSMIRLWD 287
LS S D+ I LWD
Sbjct: 186 LSCSEDNRILLWD 198
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 115/271 (42%), Gaps = 33/271 (12%)
Query: 43 VLKSSVSNGVDYLFTGSRDGTLKRWSL-ADDVGSCSATFESHVDWVNDAVLVGDNTLVSC 101
++ +VS VD F S D +L+ WSL A D A+ + ND +N +++
Sbjct: 28 LVSGTVSGTVDANF--STDSSLELWSLLAADSEKPIASLQVDSK-FNDLDWSHNNKIIAG 84
Query: 102 SSDT-TLKTWNCSSDGTCIRTLRQ---HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
+ D +L+ ++ + I ++ + HS V + K N++ASGG E+FIWD+
Sbjct: 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 158 ---------AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208
L P +S ++++ S N S + + GSSN S +++
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV----FASAGSSNFASIWDLKAKKE 200
Query: 209 V-------PIAAKGHKESVYALAMNDSGNLLVSGGTEK--VVRVWDPRTGSKTIKL--RG 257
V P + + SV +S + + G++ + +WD R + ++ +G
Sbjct: 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260
Query: 258 HTDNIRSL-LLDSTGRYCLSGSSDSMIRLWD 287
H I SL LS D+ + LW+
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY 317
H D +++L + S G +SG D +++WDL Q+ + SY H+ V +A+ P ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 318 -SGGRDLSLYLTD 329
S G D + L D
Sbjct: 198 LSCGEDGRILLWD 210
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDNT-LVSCSSDTTLKTWN 111
+ S G ++ W + + F H D V + D T VS D ++K W+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155
S +++ HS V C+AA I S G + +WD
Sbjct: 168 LSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR 256
S+ H+SQ+ + H V +L+ NDSG L S G + +R WD +T + L
Sbjct: 285 SVPTHSSQAS----LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 340
Query: 257 GHTDNIR 263
H D+I
Sbjct: 341 MHCDDIE 347
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR 256
S+ H+SQ+ + H V +L+ NDSG L S G + +R WD +T + L
Sbjct: 275 SVPTHSSQAS----LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330
Query: 257 GHTDNIR 263
H D+I
Sbjct: 331 MHCDDIE 337
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 231 LLVSGGTEKVVRVWDPR---TGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLW 286
L S ++ + +WD R T + + HT + L + + L +GS+D + LW
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 287 DLGQQRC-IHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLA 331
DL + +HS+ H D ++ + +P + S G D L++ DL+
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 54 YLFTGSRDGTLKRWSL-----ADDVGSCSATFESHVDWVNDAV--LVGDNTLVSCSSDTT 106
YL + S D T+ W + V F H V D L+ ++ S + D
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 107 LKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
L W+ ++ T T+ H+ V CL+ + I+A+G V +WD+
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L + S+D T+ W+ + + + H D + + + N I+AS G + +WD+
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL- 351
Query: 158 AALAPSKSGDAMED 171
+ + +S + ED
Sbjct: 352 SKIGEEQSTEDAED 365
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 231 LLVSGGTEKVVRVWDPR---TGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLW 286
L S ++ + +WD R T + + HT + L + + L +GS+D + LW
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 287 DLGQQRC-IHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLA 331
DL + +HS+ H D ++ + +P + S G D L++ DL+
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 54 YLFTGSRDGTLKRWSL-----ADDVGSCSATFESHVDWVNDAV--LVGDNTLVSCSSDTT 106
YL + S D T+ W + V F H V D L+ ++ S + D
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 107 LKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
L W+ ++ T T+ H+ V CL+ + I+A+G V +WD+
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 309
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L + S+D T+ W+ + + + H D + + + N I+AS G + +WD+
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL- 353
Query: 158 AALAPSKSGDAMED 171
+ + +S + ED
Sbjct: 354 SKIGEEQSTEDAED 367
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 231 LLVSGGTEKVVRVWDPR---TGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLW 286
L S ++ + +WD R T + + HT + L + + L +GS+D + LW
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 287 DLGQQRC-IHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLA 331
DL + +HS+ H D ++ + +P + S G D L++ DL+
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 54 YLFTGSRDGTLKRWSL-----ADDVGSCSATFESHVDWVNDAV--LVGDNTLVSCSSDTT 106
YL + S D T+ W + V F H V D L+ ++ S + D
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 107 LKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
L W+ ++ T T+ H+ V CL+ + I+A+G V +WD+
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L + S+D T+ W+ + + + H D + + + N I+AS G + +WD+
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL- 355
Query: 158 AALAPSKSGDAMED 171
+ + +S + ED
Sbjct: 356 SKIGEEQSTEDAED 369
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 229 GNLLVSGGTEKVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286
GN L++G VR W+ + +TI + HT + + G + S D ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 287 DLGQQRCIHSYAVHTDSVWAL--ASTPTFSHVYSGGRDLSLYLTDLATRESLLL 338
DL + I A H V + P +S V +G D +L D + +++
Sbjct: 114 DLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY-VPIAA 213
DIE +P DD ++ S +LP L +N + Q G +P A
Sbjct: 31 DIEVTSSP--------DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ 82
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
+ H V + +D G+ + + +K ++WD + ++ I++ H ++++ Y
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPNY 141
Query: 274 --CLSGSSDSMIRLWD 287
++GS D ++ WD
Sbjct: 142 SCVMTGSWDKTLKFWD 157
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 231 LLVSGGTEKVVRVWDPR---TGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLW 286
L S ++ + +WD R T + + HT + L + + L +GS+D + LW
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 287 DLGQQRC-IHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLA 331
DL + +HS+ H D ++ + +P + S G D L + DL+
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 54 YLFTGSRDGTLKRWSLA-----DDVGSCSATFESHVDWVNDAV--LVGDNTLVSCSSDTT 106
+L + S D T+ W ++ V F H V D L+ ++ S + D
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 107 LKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
L W+ S+ T ++ H+ V CL+ + I+A+G V +WD+
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L + S+D T+ W+ + + + H D + + + N I+AS G + +WD+
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL- 347
Query: 158 AALAPSKSGDAMED 171
+ + +S + ED
Sbjct: 348 SKIGEEQSPEDAED 361
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274
GH + L ND+ LL+S + +R+W G+ GH+ +I S +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-V 303
Query: 275 LSGSSDSMIRLWDLGQQRCI 294
+S S D +RLW L Q +
Sbjct: 304 ISCSMDGSVRLWSLKQNTLL 323
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 55 LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110
L + S DGTL+ W + G+ F H + A VGD+ ++SCS D +++ W
Sbjct: 262 LLSASDDGTLRIWHGGN--GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 315
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295
G + + V+ + T KL GH I L + T + LS S D +R+W G +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 296 SYAVHTDSV 304
+ H+ S+
Sbjct: 284 CFYGHSQSI 292
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 231 LLVSGGTEKVVRVWDPR--TGSKTIKL-RGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLW 286
L S ++ + +WD R T SK L HT + L + + L +GS+D + LW
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 287 DLGQQRC-IHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLA 331
DL + +H++ H D ++ + +P + S G D L + DL+
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L + S+D T+ W+ + + T H D + + + N I+AS G + +WD+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL- 349
Query: 158 AALAPSKSGDAMED 171
+ + +S + ED
Sbjct: 350 SKIGEEQSAEDAED 363
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 49 SNGVDYLFTGSRDGTLKRWSL-----ADDVGSCSATFESHVDWVNDAV--LVGDNTLVSC 101
SN +L + S D T+ W + + A F H V D L+ ++ S
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 102 SSDTTLKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
+ D L W+ S+ T + H+ V CL+ + I+A+G V +WD+
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 231 LLVSGGTEKVVRVWDPR--TGSKTIKL-RGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLW 286
L S ++ + +WD R T SK L HT + L + + L +GS+D + LW
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 287 DLGQQRC-IHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLA 331
DL + +H++ H D ++ + +P + S G D L + DL+
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157
L + S+D T+ W+ + + T H D + + + N I+AS G + +WD+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL- 349
Query: 158 AALAPSKSGDAMED 171
+ + +S + ED
Sbjct: 350 SKIGEEQSAEDAED 363
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 49 SNGVDYLFTGSRDGTLKRWSL-----ADDVGSCSATFESHVDWVNDAV--LVGDNTLVSC 101
SN +L + S D T+ W + + A F H V D L+ ++ S
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 102 SSDTTLKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156
+ D L W+ S+ T + H+ V CL+ + I+A+G V +WD+
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 22/219 (10%)
Query: 95 DNTLVSCSSDTTLKTWNCSSDGTC------IRTLRQHSDYVTCLAAAEKNSNIVASGGLG 148
DN + S S D T+ W G + TL H+ V +A N++ S G
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD 153
Query: 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN-SLPVTSLRTIGSSNSISAHTSQSQG 207
+ +WD+ A G + D ++ S + +L TS R + +
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPRKGT 209
Query: 208 YVPIAAKGHK--ESVYALAMNDSGNLLVSG---GTEKVVRVWDPRTGSKTIKLRGHTDNI 262
V + H+ V+A+ +++ G +L +G +E+ V +WD + + + L+ D
Sbjct: 210 VVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTS 267
Query: 263 RSLLL----DSTGRYCLSGSSDSMIRLWDLGQQRCIHSY 297
+LL T L G DS IR +++ + Y
Sbjct: 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 22/219 (10%)
Query: 95 DNTLVSCSSDTTLKTWNCSSDGTC------IRTLRQHSDYVTCLAAAEKNSNIVASGGLG 148
DN + S S D T+ W G + TL H+ V +A N++ S G
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN-SLPVTSLRTIGSSNSISAHTSQSQG 207
+ +WD+ A G + D ++ S + +L TS R + +
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPRKGT 209
Query: 208 YVPIAAKGHK--ESVYALAMNDSGNLLVSG---GTEKVVRVWDPRTGSKTIKLRGHTDNI 262
V + H+ V+A+ +++ G +L +G +E+ V +WD + + + L+ D
Sbjct: 210 VVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTS 267
Query: 263 RSLLL----DSTGRYCLSGSSDSMIRLWDLGQQRCIHSY 297
+LL T L G DS IR +++ + Y
Sbjct: 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL-------- 265
+GH V LA G L SGG + VV++WD R+ H ++++
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 266 LLDSTGRYCLSGSSDSMIRLWD 287
LL + G G+ D I W+
Sbjct: 274 LLATGG-----GTMDKQIHFWN 290
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 23/190 (12%)
Query: 116 GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA--------PSKSGD 167
G+C L+ H + ++ + + I+A+ + V +WD+ A K
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 168 AMEDDCSTGINGSGNSLPVTS----LRTIGSSNSISAHTSQSQ-----GYVPIAAKGHKE 218
A+E +T NG N L TS L T+G+ N + S + Y + K
Sbjct: 236 AVES-ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 219 SVYALAMNDSGNLLV--SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276
+ ++ S + G T V V+ +G + L+GH + + S + S
Sbjct: 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVY---SGEQITMLKGHYKTVDCCVFQSNFQELYS 351
Query: 277 GSSDSMIRLW 286
GS D I W
Sbjct: 352 GSRDCNILAW 361
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 217 KESVYALAMN--DSGNLLVSGGTE-KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273
+E+VY+ M+ + + LV+ GT V++ D ++GS + L+GH I ++ Y
Sbjct: 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200
Query: 274 CL-SGSSDSMIRLWDL 288
L + S+DS ++LWD+
Sbjct: 201 ILATASADSRVKLWDV 216
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 135 AEKNSNIVASGGLGAEVFIWDIEAALAPSKSGD---AMEDDCSTGINGSGNSLPVTSLRT 191
A + I AS G+ + ++ +EAA+AP GD A E G + + +L+
Sbjct: 60 APRIDGIAASTGIESRGWMLPLEAAVAPGGGGDLGAAREALVRDGFTEQDANRAIAALKA 119
Query: 192 IGSSNSISAHTSQS----QGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR 247
+ +S ++ T+ + Q Y AA+G + + L + D L+ S T + D
Sbjct: 120 VPASQTVQERTAPAWEAVQAYGERAARGALQ-IAGLDVADVDCLITSNSTTPALPGLDVA 178
Query: 248 TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS 278
++ + LRG T +LL +T C++G+
Sbjct: 179 LANR-LPLRGDT-----MLLPATQWACVAGT 203
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAKGHKE---SVYALAMNDSGNLLVSGGTEKVVRVWDPR 247
T+GS IS +S ++ + ++AL+ DS + G + +RVWD
Sbjct: 224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGADATIRVWDVT 282
Query: 248 TGSKTIKL----RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS 303
T SK ++ + N + ++ + +S S D + ++LG + + + H
Sbjct: 283 T-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG 341
Query: 304 VWALASTPTFSHVYSG 319
+ AL P S Y G
Sbjct: 342 ITALTVNPLISGSYDG 357
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 215 GHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTI---KLRGHTDNIRSLLLDST 270
GH ++ L + NLL+S + +R+W+ +T + + GH D + S D
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHS 296
G +S D ++LW + +R +++
Sbjct: 209 GEKIMSCGMDHSLKLWRINSKRMMNA 234
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAK----GHKESVYALAM----NDSGNLLVSGGTEKVVR 242
T+GS N ++ + SQG + + E+ Y A N S LL G+ ++R
Sbjct: 76 TVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 134
Query: 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYA--- 298
+ +P T GH + I L LS S D +RLW++ + +
Sbjct: 135 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 194
Query: 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
H D V + + S G D SL L + ++ +
Sbjct: 195 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 232
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAKGHKE---SVYALAMNDSGNLLVSGGTEKVVRVWDPR 247
T+GS IS +S ++ + ++AL+ DS + G + +RVWD
Sbjct: 224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGADATIRVWDVT 282
Query: 248 TGSKTIKL----RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS 303
T SK ++ + N + ++ + +S S D + ++LG + + + H
Sbjct: 283 T-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG 341
Query: 304 VWALASTPTFSHVYSG 319
+ AL P S Y G
Sbjct: 342 ITALTVNPLISGSYDG 357
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT-------IKLRGHTDNIRSLLLD 268
H + V+++ N G+L S G + + +++ G+KT +K H+ ++ L
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT 301
G S S+D I++W++ + + V T
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 215 GHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTI---KLRGHTDNIRSLLLDST 270
GH ++ L + NLL+S + +R+W+ +T + + GH D + S D
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHS 296
G +S D ++LW + +R +++
Sbjct: 168 GEKIMSCGMDHSLKLWRINSKRMMNA 193
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAK----GHKESVYALAM----NDSGNLLVSGGTEKVVR 242
T+GS N ++ + SQG + + E+ Y A N S LL G+ ++R
Sbjct: 35 TVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 93
Query: 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYA--- 298
+ +P T GH + I L LS S D +RLW++ + +
Sbjct: 94 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 153
Query: 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
H D V + + S G D SL L + ++ +
Sbjct: 154 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 215 GHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTI---KLRGHTDNIRSLLLDST 270
GH ++ L + NLL+S + +R+W+ +T + + GH D + S D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHS 296
G +S D ++LW + +R +++
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNA 197
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAK----GHKESVYALAM----NDSGNLLVSGGTEKVVR 242
T+GS N ++ + SQG + + E+ Y A N S LL G+ ++R
Sbjct: 39 TVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 97
Query: 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYA--- 298
+ +P T GH + I L LS S D +RLW++ + +
Sbjct: 98 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 157
Query: 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
H D V + + S G D SL L + ++ +
Sbjct: 158 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 215 GHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTI---KLRGHTDNIRSLLLDST 270
GH ++ L + NLL+S + +R+W+ +T + + GH D + S D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHS 296
G +S D ++LW + +R +++
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNA 197
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAK----GHKESVYALAM----NDSGNLLVSGGTEKVVR 242
T+GS N ++ + SQG + + E+ Y A N S LL G+ ++R
Sbjct: 39 TVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 97
Query: 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYA--- 298
+ +P T GH + I L LS S D +RLW++ + +
Sbjct: 98 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 157
Query: 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
H D V + + S G D SL L + ++ +
Sbjct: 158 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 215 GHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTI---KLRGHTDNIRSLLLDST 270
GH ++ L + NLL+S + +R+W+ +T + + GH D + S D
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 271 GRYCLSGSSDSMIRLWDLGQQRCIHS 296
G +S D ++LW + +R +++
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNA 198
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 191 TIGSSNSISAHTSQSQGYVPIAAK----GHKESVYALAM----NDSGNLLVSGGTEKVVR 242
T+GS N ++ + SQG + + E+ Y A N S LL G+ ++R
Sbjct: 40 TVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98
Query: 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYA--- 298
+ +P T GH + I L LS S D +RLW++ + +
Sbjct: 99 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158
Query: 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336
H D V + + S G D SL L + ++ +
Sbjct: 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 93/252 (36%), Gaps = 55/252 (21%)
Query: 74 GSCSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTC 131
GS +H + ++DAVL L +CSSD T+K + + I TL H V
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 132 LAAAE-KNSNIVASGGLGAEVFIWDIE-------------------AALAPSKSGDAMED 171
+ A K I+AS +V IW E AP + G +
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL- 119
Query: 172 DCSTGINGSGNSLPVTSLRTIGSSNSI--SAHT--SQSQGYVPIAAK------GHKESVY 221
+ S + V + G+++ I AH S + P + G KES
Sbjct: 120 -----VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-- 172
Query: 222 ALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI----KLRGHTDNIRSLLLDST---GRYC 274
V+GG + +V++W + ++T L GH+D +R + T Y
Sbjct: 173 --------RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224
Query: 275 LSGSSDSMIRLW 286
S S D +W
Sbjct: 225 ASVSQDRTCIIW 236
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 55 LFTGSRDGTLKRWSLADDVGS--CSATFESHVDWVNDA----VLVGDNTLVSCSSDTTLK 108
TG D +K W D + +T E H DWV D ++ + L S S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 109 TWNCSSD-GTCIRTLRQHSDYVTCL--AAAEKNSNIVASGGLGAEVFIW--DIEAALAPS 163
W ++ G +TL + + L A+ + N++A G +V +W ++E P+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 91/244 (37%), Gaps = 55/244 (22%)
Query: 82 SHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAE-KN 138
+H + ++DAVL L +CSSD T+K + + I TL H V + A K
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 139 SNIVASGGLGAEVFIWDIE-------------------AALAPSKSGDAMEDDCSTGING 179
I+AS +V IW E AP + G + +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL------LVAS 120
Query: 180 SGNSLPVTSLRTIGSSNSI--SAHT--SQSQGYVPIAAK------GHKESVYALAMNDSG 229
S + V + G+++ I AH S + P + G KES
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES---------- 170
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTI----KLRGHTDNIRSLLLDST---GRYCLSGSSDSM 282
V+GG + +V++W + ++T L GH+D +R + T Y S S D
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 283 IRLW 286
+W
Sbjct: 231 CIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 55 LFTGSRDGTLKRWSLADDVGS--CSATFESHVDWVNDAV----LVGDNTLVSCSSDTTLK 108
TG D +K W D + +T E H DWV D ++ + L S S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 109 TWNCSSD-GTCIRTLRQHSDYVTCL--AAAEKNSNIVASGGLGAEVFIW--DIEAALAPS 163
W ++ G +TL + + L A+ + N++A G +V +W ++E P+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 91/244 (37%), Gaps = 55/244 (22%)
Query: 82 SHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAE-KN 138
+H + ++DAVL L +CSSD T+K + + I TL H V + A K
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 139 SNIVASGGLGAEVFIWDIE-------------------AALAPSKSGDAMEDDCSTGING 179
I+AS +V IW E AP + G + S G
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 123
Query: 180 SGNSLPVTSLRTIGSSNSI--SAHT--SQSQGYVPIAAK------GHKESVYALAMNDSG 229
+ V + G+++ I AH S + P + G KES
Sbjct: 124 ---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES---------- 170
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTI----KLRGHTDNIRSLLLDST---GRYCLSGSSDSM 282
V+GG + +V++W + ++T L GH+D +R + T Y S S D
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 283 IRLW 286
+W
Sbjct: 231 CIIW 234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVW-DPRTGSKTIKL------RGHTDNIRSLLL 267
HK+++ ++A +LL +G + V +W + +T ++ GH + ++ +
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 268 DSTGRYCLSGSSDSMIRLWDLGQQ----RCIHSYAVHTDSV 304
+ G Y + S D + +W+ + CI H+ V
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 185 PVTSLRTIGSSNSI--------SAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG 236
P TSL GS +S SA + + I +GH+ V +A ++ G L +
Sbjct: 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCS 126
Query: 237 TEKVVRVWDPRTGSKTIK----LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW-DLGQQ 291
+K V +W+ + + L+ H+ +++ ++ + S S D +R+W D
Sbjct: 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Query: 292 -RCIHSYAVHTDSVWA 306
C+ H +VW+
Sbjct: 187 WECVAVLNGHEGTVWS 202
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 23/165 (13%)
Query: 138 NSNIVASGGLGAEVFIWDIEAALAPSKSGD-AMEDDCSTGINGSGNSLPVTS-------L 189
+++++A+G + V IW A +S D E D I G N + + L
Sbjct: 69 HTSLLAAGSFDSTVSIW------AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 190 RTIGSSNSISAHTSQSQG--YVPIAA-KGHKESVYALAMNDSGNLLVSGGTEKVVRVW-D 245
T S+ + G Y I+ + H + V + + S LL S + VR+W D
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 246 PRTGSKTIK-LRGHTDNIRSLLLDSTG---RYCLSGSSDSMIRLW 286
+ + L GH + S D T R C SGS DS +R+W
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC-SGSDDSTVRVW 226
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 50 NGVDYLFTGSRDGTLKRWSLADD-VGSCSATFESHVDWVND-----AVLVGDNTLVSCSS 103
N + +G D +K W +D E+H DWV D ++ + +T+ SCS
Sbjct: 177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236
Query: 104 DTTLKTWNC---SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154
D + W C SS+ + L + +D V ++ + +NI+A G +V +W
Sbjct: 237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS-ITANILAVSGGDNKVTLW 289
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDS--TG 271
H++ ++ M+ G L + +++ V+++D R G + + LRGH + + G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 272 RYCLSGSSDSMIRLW--DLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTD 329
S S D + +W + G H +A H SV ++ P H Y G L+ +D
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP---HDY--GLILACGSSD 126
Query: 330 LATRESLLLCTGE 342
A SLL TGE
Sbjct: 127 GAI--SLLTYTGE 137
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 34 HCAGINCLAVLKSSVSNGVDY--------LFTGSRDGTLKRWSLADDVGS--CSATFESH 83
H G+N + +++ ++ TG D +K W D + +T E H
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Query: 84 VDWVNDAV----LVGDNTLVSCSSDTTLKTWNCSSD-GTCIRTLRQHSDYVTCL--AAAE 136
DWV D ++ + + S S D T W ++ G +TL + + L A+
Sbjct: 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 137 KNSNIVASGGLGAEVFIW--DIEAALAPS 163
+ N++A G +V +W ++E P+
Sbjct: 264 LSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 91/244 (37%), Gaps = 55/244 (22%)
Query: 82 SHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAE-KN 138
+H + ++DAV+ + +CSSD T+K + + I TL H V + A K
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 139 SNIVASGGLGAEVFIWDIE-------------------AALAPSKSGDAMEDDCSTGING 179
I+AS +V IW E AP + G + S G
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG--- 123
Query: 180 SGNSLPVTSLRTIGSSNSI--SAHT--SQSQGYVPIAAK------GHKESVYALAMNDSG 229
+ V + G+++ I AH S + P + G KES
Sbjct: 124 ---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES---------- 170
Query: 230 NLLVSGGTEKVVRVWDPRTGSKTI----KLRGHTDNIRSLLLDST---GRYCLSGSSDSM 282
V+GG + +V++W + ++T L GH+D +R + T Y S S D
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230
Query: 283 IRLW 286
+W
Sbjct: 231 CIIW 234
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 19/149 (12%)
Query: 34 HCAGINCLAVLKSSVSNGVDY--------LFTGSRDGTLKRWSLADDVGS--CSATFESH 83
H G+N + +++ ++ TG D +K W D + +T E H
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Query: 84 VDWVNDAV----LVGDNTLVSCSSDTTLKTWNCSSD-GTCIRTLRQHSDYVTCL--AAAE 136
DWV D ++ + S S D T W ++ G +TL + + L A+
Sbjct: 204 SDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 137 KNSNIVASGGLGAEVFIW--DIEAALAPS 163
+ N++A G +V +W ++E P+
Sbjct: 264 LSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,679,742
Number of Sequences: 62578
Number of extensions: 1025272
Number of successful extensions: 3220
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2357
Number of HSP's gapped (non-prelim): 428
length of query: 764
length of database: 14,973,337
effective HSP length: 106
effective length of query: 658
effective length of database: 8,340,069
effective search space: 5487765402
effective search space used: 5487765402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)