Query 046871
Match_columns 764
No_of_seqs 978 out of 3859
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0308 Conserved WD40 repeat- 100.0 3E-110 6E-115 863.7 43.4 681 16-764 2-722 (735)
2 PF11816 DUF3337: Domain of un 100.0 3.8E-56 8.3E-61 463.4 17.2 285 425-763 2-331 (331)
3 KOG0271 Notchless-like WD40 re 100.0 6.1E-50 1.3E-54 391.2 28.9 339 16-446 95-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 8.8E-43 1.9E-47 345.9 24.3 280 32-368 172-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 2.9E-42 6.4E-47 337.4 25.0 280 32-368 154-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-41 9.2E-46 333.9 24.0 280 82-446 173-458 (459)
7 KOG0279 G protein beta subunit 100.0 2.1E-39 4.7E-44 306.0 31.7 299 74-449 5-314 (315)
8 KOG0286 G-protein beta subunit 100.0 3.3E-38 7.1E-43 299.6 33.1 279 33-368 53-343 (343)
9 KOG0319 WD40-repeat-containing 100.0 2.9E-38 6.2E-43 333.5 29.4 379 33-457 103-586 (775)
10 KOG0279 G protein beta subunit 100.0 1.2E-37 2.7E-42 294.1 30.5 284 32-370 12-313 (315)
11 KOG0286 G-protein beta subunit 100.0 4.6E-37 1E-41 291.7 32.2 290 76-446 47-343 (343)
12 KOG0291 WD40-repeat-containing 100.0 1.5E-36 3.2E-41 320.5 38.4 375 27-456 137-558 (893)
13 KOG0318 WD40 repeat stress pro 100.0 2.1E-35 4.5E-40 300.6 36.5 363 31-449 55-561 (603)
14 KOG0295 WD40 repeat-containing 100.0 9.5E-37 2.1E-41 297.7 24.7 281 32-368 105-404 (406)
15 KOG0291 WD40-repeat-containing 100.0 3.4E-35 7.3E-40 310.3 37.8 364 34-470 264-637 (893)
16 KOG0318 WD40 repeat stress pro 100.0 3.8E-35 8.3E-40 298.6 35.2 369 29-448 141-602 (603)
17 KOG0273 Beta-transducin family 100.0 2.6E-35 5.6E-40 296.4 31.3 322 33-448 176-523 (524)
18 KOG0285 Pleiotropic regulator 100.0 1.2E-35 2.6E-40 288.7 27.2 295 75-448 142-439 (460)
19 KOG0273 Beta-transducin family 100.0 3E-35 6.5E-40 295.9 31.0 277 35-370 235-523 (524)
20 KOG0315 G-protein beta subunit 100.0 4.2E-35 9.1E-40 272.2 29.3 282 52-385 10-303 (311)
21 KOG0285 Pleiotropic regulator 100.0 1.2E-35 2.5E-40 288.8 26.1 281 32-371 148-440 (460)
22 KOG0296 Angio-associated migra 100.0 1.7E-34 3.8E-39 282.1 32.1 325 31-448 60-398 (399)
23 KOG0284 Polyadenylation factor 100.0 2.5E-36 5.4E-41 298.5 18.6 279 34-370 95-380 (464)
24 KOG0315 G-protein beta subunit 100.0 1.1E-34 2.3E-39 269.5 28.0 278 97-460 12-300 (311)
25 KOG0281 Beta-TrCP (transducin 100.0 1.8E-36 3.9E-41 293.0 16.4 278 33-375 195-482 (499)
26 KOG0319 WD40-repeat-containing 100.0 4.1E-34 8.9E-39 302.2 29.2 378 30-450 142-621 (775)
27 KOG0263 Transcription initiati 100.0 1.5E-34 3.2E-39 309.2 26.1 243 36-333 379-651 (707)
28 KOG0265 U5 snRNP-specific prot 100.0 1.1E-33 2.4E-38 269.9 28.3 281 31-367 43-335 (338)
29 KOG0276 Vesicle coat complex C 100.0 3.8E-33 8.3E-38 288.8 30.4 291 32-379 10-307 (794)
30 KOG0295 WD40 repeat-containing 100.0 9.2E-34 2E-38 276.9 24.3 312 50-446 74-404 (406)
31 KOG0284 Polyadenylation factor 100.0 2.1E-34 4.5E-39 285.0 18.1 279 84-448 96-380 (464)
32 KOG0306 WD40-repeat-containing 100.0 6.7E-32 1.5E-36 285.3 36.1 434 31-492 103-653 (888)
33 cd00200 WD40 WD40 domain, foun 100.0 7.2E-32 1.6E-36 279.9 36.2 281 31-368 5-289 (289)
34 KOG0266 WD40 repeat-containing 100.0 1.6E-32 3.6E-37 302.8 32.1 283 34-370 158-454 (456)
35 KOG0645 WD40 repeat protein [G 100.0 1E-31 2.2E-36 253.1 31.0 294 75-448 5-311 (312)
36 KOG0645 WD40 repeat protein [G 100.0 9.2E-32 2E-36 253.3 30.1 282 32-370 11-311 (312)
37 KOG0316 Conserved WD40 repeat- 100.0 4.2E-32 9E-37 250.3 26.1 275 33-367 15-296 (307)
38 KOG0263 Transcription initiati 100.0 1.3E-32 2.9E-37 294.3 23.1 282 117-452 369-653 (707)
39 cd00200 WD40 WD40 domain, foun 100.0 6.9E-31 1.5E-35 272.5 35.2 284 77-446 2-289 (289)
40 KOG0301 Phospholipase A2-activ 100.0 1.2E-31 2.6E-36 281.7 28.8 407 32-516 11-432 (745)
41 KOG0282 mRNA splicing factor [ 100.0 1.1E-32 2.3E-37 278.8 19.9 282 32-368 211-503 (503)
42 KOG0276 Vesicle coat complex C 100.0 1.9E-31 4.1E-36 276.3 29.5 238 35-327 55-295 (794)
43 KOG0281 Beta-TrCP (transducin 100.0 4.7E-33 1E-37 269.4 16.3 282 83-452 196-481 (499)
44 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 3.1E-35 308.9 41.2 284 29-369 477-792 (793)
45 KOG0292 Vesicle coat complex C 100.0 1.9E-31 4E-36 285.8 30.0 289 32-377 6-328 (1202)
46 KOG0265 U5 snRNP-specific prot 100.0 1.9E-31 4.2E-36 254.6 26.6 286 75-446 38-336 (338)
47 PLN00181 protein SPA1-RELATED; 100.0 6.5E-30 1.4E-34 303.2 38.9 313 61-447 457-792 (793)
48 KOG0313 Microtubule binding pr 100.0 1.1E-30 2.4E-35 256.7 26.3 302 32-369 102-417 (423)
49 KOG0266 WD40 repeat-containing 100.0 2.7E-30 5.8E-35 285.2 32.6 287 78-448 152-454 (456)
50 KOG0293 WD40 repeat-containing 100.0 9E-31 1.9E-35 259.2 24.9 284 32-371 221-514 (519)
51 KOG0278 Serine/threonine kinas 100.0 4.5E-31 9.7E-36 245.4 19.6 287 32-375 11-302 (334)
52 KOG0292 Vesicle coat complex C 100.0 9.1E-30 2E-34 272.9 32.4 325 29-394 45-376 (1202)
53 KOG0296 Angio-associated migra 100.0 1.2E-29 2.5E-34 248.4 30.2 294 77-458 57-366 (399)
54 KOG0306 WD40-repeat-containing 100.0 1.1E-29 2.3E-34 268.8 28.2 290 33-371 371-665 (888)
55 KOG0274 Cdc4 and related F-box 100.0 1.2E-29 2.6E-34 278.6 28.8 279 34-378 207-490 (537)
56 KOG0283 WD40 repeat-containing 100.0 7.2E-30 1.6E-34 275.8 25.2 249 29-334 260-579 (712)
57 KOG0282 mRNA splicing factor [ 100.0 8.3E-31 1.8E-35 265.2 16.6 287 75-446 205-503 (503)
58 KOG1407 WD40 repeat protein [F 100.0 5.8E-29 1.3E-33 233.1 27.0 276 29-361 14-293 (313)
59 KOG0313 Microtubule binding pr 100.0 2.9E-29 6.3E-34 246.7 26.1 280 82-447 103-417 (423)
60 KOG0316 Conserved WD40 repeat- 100.0 2.5E-29 5.4E-34 232.0 23.2 263 76-392 9-279 (307)
61 KOG0293 WD40 repeat-containing 100.0 3.6E-29 7.7E-34 247.9 21.5 289 75-448 215-513 (519)
62 KOG0268 Sof1-like rRNA process 100.0 6.2E-30 1.3E-34 249.7 15.5 281 32-375 63-350 (433)
63 KOG0275 Conserved WD40 repeat- 100.0 2E-29 4.3E-34 242.1 17.0 279 82-446 211-507 (508)
64 KOG0274 Cdc4 and related F-box 100.0 2.2E-28 4.8E-33 268.7 27.5 281 83-456 207-490 (537)
65 KOG1539 WD repeat protein [Gen 100.0 9.2E-28 2E-32 257.2 31.3 344 20-456 192-614 (910)
66 KOG0275 Conserved WD40 repeat- 100.0 7.2E-29 1.6E-33 238.2 19.3 280 33-368 211-507 (508)
67 KOG0278 Serine/threonine kinas 100.0 6.4E-29 1.4E-33 231.1 17.5 291 77-456 7-305 (334)
68 KOG0772 Uncharacterized conser 100.0 3.4E-28 7.4E-33 247.2 23.7 301 20-369 149-486 (641)
69 KOG0288 WD40 repeat protein Ti 100.0 8.3E-29 1.8E-33 245.9 18.6 278 32-368 172-459 (459)
70 KOG0643 Translation initiation 100.0 1.1E-27 2.5E-32 225.1 24.7 294 79-448 5-317 (327)
71 KOG0277 Peroxisomal targeting 100.0 4.5E-28 9.7E-33 226.3 21.8 262 60-369 36-308 (311)
72 KOG0643 Translation initiation 100.0 4.2E-27 9.1E-32 221.3 28.0 287 32-370 7-317 (327)
73 KOG0310 Conserved WD40 repeat- 100.0 1.8E-27 3.9E-32 241.6 26.2 278 35-370 26-309 (487)
74 KOG1446 Histone H3 (Lys4) meth 100.0 3E-26 6.6E-31 221.7 33.4 279 34-371 13-304 (311)
75 KOG0640 mRNA cleavage stimulat 100.0 1.1E-27 2.4E-32 229.2 23.1 285 33-369 110-425 (430)
76 PTZ00421 coronin; Provisional 100.0 1.8E-26 4E-31 253.6 34.6 285 34-371 19-332 (493)
77 KOG1408 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 244.0 29.7 370 33-449 76-714 (1080)
78 KOG0277 Peroxisomal targeting 100.0 7.1E-28 1.5E-32 225.0 18.3 242 35-330 60-308 (311)
79 KOG0283 WD40 repeat-containing 100.0 5.8E-27 1.3E-31 253.4 27.1 292 120-450 260-578 (712)
80 KOG0300 WD40 repeat-containing 100.0 8E-27 1.7E-31 223.7 24.0 338 54-449 126-477 (481)
81 KOG0973 Histone transcription 100.0 6.5E-27 1.4E-31 259.1 26.9 286 33-372 10-357 (942)
82 KOG0294 WD40 repeat-containing 100.0 2.4E-26 5.3E-31 221.1 26.0 262 27-351 35-306 (362)
83 KOG0300 WD40 repeat-containing 100.0 1.3E-26 2.7E-31 222.4 22.9 285 30-372 143-478 (481)
84 PTZ00420 coronin; Provisional 100.0 1E-25 2.2E-30 248.4 33.1 246 58-354 50-318 (568)
85 KOG0640 mRNA cleavage stimulat 100.0 8.9E-27 1.9E-31 223.0 21.2 288 77-446 105-424 (430)
86 KOG0288 WD40 repeat protein Ti 99.9 3.3E-27 7E-32 234.6 17.5 284 75-445 166-458 (459)
87 KOG0301 Phospholipase A2-activ 99.9 3.4E-26 7.4E-31 240.8 26.0 283 74-450 4-290 (745)
88 KOG0305 Anaphase promoting com 99.9 4.9E-26 1.1E-30 240.7 27.1 272 90-450 183-463 (484)
89 PTZ00421 coronin; Provisional 99.9 3.1E-25 6.7E-30 243.8 33.1 253 85-378 21-298 (493)
90 KOG2106 Uncharacterized conser 99.9 4.8E-25 1E-29 223.9 31.4 372 30-453 99-526 (626)
91 KOG1407 WD40 repeat protein [F 99.9 1.6E-25 3.4E-30 210.2 25.5 251 78-379 14-270 (313)
92 KOG0289 mRNA splicing factor [ 99.9 2E-25 4.4E-30 223.0 26.8 279 36-369 220-505 (506)
93 KOG0310 Conserved WD40 repeat- 99.9 8.5E-26 1.8E-30 229.5 24.1 241 32-330 65-308 (487)
94 KOG0305 Anaphase promoting com 99.9 2.5E-25 5.4E-30 235.4 28.3 269 51-374 187-465 (484)
95 KOG0647 mRNA export protein (c 99.9 2.2E-25 4.8E-30 213.4 24.9 263 34-354 26-305 (347)
96 KOG0299 U3 snoRNP-associated p 99.9 2.8E-25 6E-30 224.1 26.6 280 33-369 140-455 (479)
97 KOG0268 Sof1-like rRNA process 99.9 1E-26 2.2E-31 227.4 15.1 285 76-452 58-349 (433)
98 KOG0294 WD40 repeat-containing 99.9 5.9E-25 1.3E-29 211.7 26.2 264 98-450 4-283 (362)
99 KOG1063 RNA polymerase II elon 99.9 3E-25 6.6E-30 233.5 26.2 344 77-456 184-658 (764)
100 PTZ00420 coronin; Provisional 99.9 2.1E-24 4.5E-29 238.1 34.0 231 101-373 50-296 (568)
101 KOG1446 Histone H3 (Lys4) meth 99.9 5.6E-24 1.2E-28 206.0 32.3 268 74-393 4-285 (311)
102 KOG1036 Mitotic spindle checkp 99.9 1.2E-24 2.6E-29 209.5 27.0 264 35-360 13-294 (323)
103 KOG1539 WD repeat protein [Gen 99.9 1.6E-24 3.4E-29 232.5 30.5 369 34-447 242-647 (910)
104 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.2E-28 193.5 31.3 283 34-370 31-349 (350)
105 KOG0299 U3 snoRNP-associated p 99.9 4.5E-25 9.7E-30 222.5 24.5 276 119-450 135-412 (479)
106 KOG0973 Histone transcription 99.9 6.6E-25 1.4E-29 243.2 27.3 304 83-452 12-359 (942)
107 KOG0264 Nucleosome remodeling 99.9 6.1E-25 1.3E-29 222.0 24.0 249 33-331 122-404 (422)
108 KOG0772 Uncharacterized conser 99.9 4.7E-25 1E-29 224.5 22.7 298 75-445 158-484 (641)
109 KOG2096 WD40 repeat protein [G 99.9 2E-24 4.3E-29 207.9 25.4 297 77-447 79-401 (420)
110 KOG1063 RNA polymerase II elon 99.9 2.1E-24 4.5E-29 227.3 26.4 387 32-448 264-763 (764)
111 KOG0308 Conserved WD40 repeat- 99.9 3.9E-25 8.4E-30 231.2 20.1 229 97-372 39-287 (735)
112 KOG2096 WD40 repeat protein [G 99.9 3.3E-24 7.2E-29 206.3 24.2 284 29-368 80-400 (420)
113 KOG1332 Vesicle coat complex C 99.9 7.1E-25 1.5E-29 203.9 18.2 250 31-331 7-286 (299)
114 KOG2048 WD40 repeat protein [G 99.9 3.1E-23 6.6E-28 218.5 32.7 358 35-449 25-412 (691)
115 KOG0289 mRNA splicing factor [ 99.9 7E-24 1.5E-28 212.0 25.5 276 85-447 220-505 (506)
116 KOG0639 Transducin-like enhanc 99.9 1.1E-24 2.4E-29 220.7 19.8 280 33-369 417-703 (705)
117 KOG2106 Uncharacterized conser 99.9 4.8E-22 1E-26 202.2 38.7 392 36-448 201-626 (626)
118 KOG0646 WD40 repeat protein [G 99.9 3.6E-24 7.8E-29 216.5 22.5 278 105-456 18-315 (476)
119 KOG0639 Transducin-like enhanc 99.9 2.4E-24 5.3E-29 218.3 21.1 282 81-448 416-704 (705)
120 KOG0641 WD40 repeat protein [G 99.9 5.6E-23 1.2E-27 188.6 27.9 251 32-331 86-349 (350)
121 KOG0264 Nucleosome remodeling 99.9 3.4E-24 7.4E-29 216.6 20.6 250 81-371 121-405 (422)
122 KOG1332 Vesicle coat complex C 99.9 6.6E-24 1.4E-28 197.5 17.4 244 81-370 8-286 (299)
123 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.2E-22 1.6E-26 207.9 35.2 272 53-380 2-289 (300)
124 KOG4283 Transcription-coupled 99.9 8E-23 1.7E-27 194.8 24.4 298 32-448 40-365 (397)
125 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.9E-28 220.9 20.5 249 33-332 457-714 (1080)
126 KOG1036 Mitotic spindle checkp 99.9 3E-22 6.5E-27 193.0 26.2 263 84-438 13-294 (323)
127 KOG1274 WD40 repeat protein [G 99.9 3E-22 6.4E-27 217.7 29.4 262 33-354 11-282 (933)
128 KOG2445 Nuclear pore complex c 99.9 3.1E-22 6.8E-27 192.3 25.8 276 32-349 10-339 (361)
129 KOG0267 Microtubule severing p 99.9 2.2E-24 4.7E-29 228.0 10.9 247 50-354 2-250 (825)
130 KOG0269 WD40 repeat-containing 99.9 5.7E-23 1.2E-27 219.1 20.8 283 35-371 39-341 (839)
131 KOG2055 WD40 repeat protein [G 99.9 6.6E-22 1.4E-26 199.6 27.0 303 12-370 190-512 (514)
132 KOG0321 WD40 repeat-containing 99.9 2.1E-22 4.6E-27 210.4 22.5 300 51-372 63-393 (720)
133 KOG0647 mRNA export protein (c 99.9 5.7E-22 1.2E-26 190.1 23.1 257 123-456 24-289 (347)
134 KOG1273 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 190.9 23.1 282 38-372 26-324 (405)
135 KOG0269 WD40 repeat-containing 99.9 3E-23 6.6E-28 221.2 15.9 236 50-333 98-342 (839)
136 KOG2048 WD40 repeat protein [G 99.9 7.8E-21 1.7E-25 200.5 33.3 364 34-453 68-510 (691)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-20 2.2E-25 199.1 34.8 269 97-456 3-287 (300)
138 KOG0646 WD40 repeat protein [G 99.9 7.2E-22 1.6E-26 200.0 21.4 257 53-353 51-330 (476)
139 KOG0267 Microtubule severing p 99.9 2E-23 4.3E-28 220.8 10.5 238 29-323 22-260 (825)
140 KOG0650 WD40 repeat nucleolar 99.9 1.5E-21 3.2E-26 202.5 23.8 278 32-367 397-732 (733)
141 KOG1274 WD40 repeat protein [G 99.9 5.2E-21 1.1E-25 208.2 28.4 240 81-371 10-263 (933)
142 KOG2055 WD40 repeat protein [G 99.9 4.8E-21 1E-25 193.4 26.0 284 84-448 213-512 (514)
143 KOG4328 WD40 protein [Function 99.9 4E-21 8.7E-26 193.9 23.4 287 32-370 183-495 (498)
144 KOG4378 Nuclear protein COP1 [ 99.9 5.3E-21 1.1E-25 194.1 20.9 280 63-394 13-304 (673)
145 KOG4283 Transcription-coupled 99.9 3.4E-20 7.5E-25 177.0 24.9 218 123-374 40-280 (397)
146 KOG4328 WD40 protein [Function 99.9 1.4E-20 3E-25 190.0 22.4 257 77-379 179-459 (498)
147 KOG0302 Ribosome Assembly prot 99.9 1.2E-20 2.5E-25 186.1 21.2 243 81-368 148-436 (440)
148 KOG0270 WD40 repeat-containing 99.9 1E-20 2.2E-25 190.5 20.3 249 39-336 177-454 (463)
149 COG2319 FOG: WD40 repeat [Gene 99.9 5.2E-18 1.1E-22 186.2 42.7 360 31-449 61-443 (466)
150 KOG0302 Ribosome Assembly prot 99.9 4E-20 8.8E-25 182.3 22.0 244 32-324 148-432 (440)
151 KOG2445 Nuclear pore complex c 99.9 1.2E-19 2.5E-24 174.7 24.5 252 81-372 10-320 (361)
152 KOG1034 Transcriptional repres 99.9 3.1E-20 6.6E-25 180.2 20.3 301 21-370 24-383 (385)
153 KOG1445 Tumor-specific antigen 99.9 6.4E-20 1.4E-24 191.0 23.7 154 218-371 628-799 (1012)
154 KOG0650 WD40 repeat nucleolar 99.9 7.7E-20 1.7E-24 189.9 23.6 330 75-445 391-732 (733)
155 KOG0270 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 181.4 21.6 231 97-375 194-454 (463)
156 KOG0307 Vesicle coat complex C 99.8 2.3E-20 5.1E-25 208.2 16.3 278 49-373 15-330 (1049)
157 KOG1273 WD40 repeat protein [G 99.8 6.1E-19 1.3E-23 170.1 22.7 276 87-449 26-323 (405)
158 KOG0321 WD40 repeat-containing 99.8 3.7E-19 8E-24 186.4 22.0 259 32-333 97-393 (720)
159 KOG4378 Nuclear protein COP1 [ 99.8 4.9E-19 1.1E-23 179.9 21.4 262 37-354 36-305 (673)
160 KOG1538 Uncharacterized conser 99.8 9.8E-19 2.1E-23 183.1 22.3 268 37-370 14-293 (1081)
161 KOG2919 Guanine nucleotide-bin 99.8 4.2E-18 9E-23 165.0 24.2 271 48-362 57-361 (406)
162 KOG0322 G-protein beta subunit 99.8 7.9E-19 1.7E-23 165.6 17.0 294 23-369 7-322 (323)
163 KOG1034 Transcriptional repres 99.8 9.7E-19 2.1E-23 169.8 16.8 271 33-331 87-383 (385)
164 KOG0303 Actin-binding protein 99.8 8.5E-18 1.8E-22 166.9 22.8 243 78-370 75-337 (472)
165 KOG0307 Vesicle coat complex C 99.8 3.8E-19 8.2E-24 198.6 14.8 248 36-334 65-330 (1049)
166 KOG1963 WD40 repeat protein [G 99.8 9.1E-17 2E-21 175.3 32.5 332 33-379 13-384 (792)
167 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-18 3.3E-23 179.9 17.8 268 20-302 284-574 (577)
168 KOG0644 Uncharacterized conser 99.8 4.3E-19 9.4E-24 190.5 13.7 282 32-376 187-474 (1113)
169 KOG2919 Guanine nucleotide-bin 99.8 6.8E-18 1.5E-22 163.5 18.8 238 37-322 106-361 (406)
170 KOG1009 Chromatin assembly com 99.8 4.1E-17 9E-22 162.9 23.7 301 84-452 13-376 (434)
171 KOG0649 WD40 repeat protein [G 99.8 6.7E-17 1.5E-21 150.8 23.4 243 87-371 13-275 (325)
172 KOG0303 Actin-binding protein 99.8 4.8E-17 1E-21 161.6 21.8 230 103-374 55-298 (472)
173 KOG1188 WD40 repeat protein [G 99.8 2.8E-17 6E-22 160.8 19.8 196 96-339 41-250 (376)
174 KOG1517 Guanine nucleotide bin 99.8 7.9E-17 1.7E-21 177.4 25.6 285 33-373 1062-1384(1387)
175 COG2319 FOG: WD40 repeat [Gene 99.8 4E-15 8.6E-20 163.3 39.2 329 79-458 60-410 (466)
176 KOG1009 Chromatin assembly com 99.8 5.9E-17 1.3E-21 161.8 21.9 286 35-375 13-377 (434)
177 KOG1538 Uncharacterized conser 99.8 1.6E-16 3.6E-21 166.7 25.3 237 32-330 50-292 (1081)
178 KOG1963 WD40 repeat protein [G 99.8 5.9E-16 1.3E-20 169.0 30.2 296 32-372 202-540 (792)
179 KOG1240 Protein kinase contain 99.7 3.7E-16 8E-21 175.0 27.5 330 74-446 1038-1431(1431)
180 KOG0649 WD40 repeat protein [G 99.7 1.2E-15 2.7E-20 142.4 26.3 263 47-367 17-313 (325)
181 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-17 4.1E-22 171.8 15.6 283 53-377 243-568 (577)
182 KOG1334 WD40 repeat protein [G 99.7 1.1E-17 2.3E-22 170.5 13.4 288 32-371 139-467 (559)
183 KOG1007 WD repeat protein TSSC 99.7 2.8E-16 6E-21 150.2 21.3 272 54-370 28-361 (370)
184 KOG1188 WD40 repeat protein [G 99.7 1.5E-16 3.1E-21 155.8 18.8 269 53-370 41-346 (376)
185 KOG1524 WD40 repeat-containing 99.7 3.5E-16 7.7E-21 160.8 20.7 265 82-445 12-283 (737)
186 KOG4227 WD40 repeat protein [G 99.7 4.6E-16 1E-20 154.0 20.7 288 30-370 51-387 (609)
187 KOG1524 WD40 repeat-containing 99.7 2.9E-16 6.2E-21 161.4 19.7 263 31-367 10-283 (737)
188 KOG0644 Uncharacterized conser 99.7 2.1E-17 4.5E-22 177.7 11.8 286 75-456 181-476 (1113)
189 KOG0290 Conserved WD40 repeat- 99.7 3E-15 6.6E-20 143.3 24.8 275 37-359 46-355 (364)
190 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.5E-19 155.4 32.5 268 54-370 3-304 (330)
191 KOG4227 WD40 repeat protein [G 99.7 9.4E-16 2E-20 151.8 21.7 312 74-448 46-387 (609)
192 KOG0322 G-protein beta subunit 99.7 2.1E-16 4.5E-21 149.3 14.2 292 76-447 6-322 (323)
193 KOG1007 WD repeat protein TSSC 99.7 1.6E-15 3.4E-20 145.1 20.2 248 32-332 60-362 (370)
194 KOG2110 Uncharacterized conser 99.7 2.6E-14 5.7E-19 141.7 29.3 233 84-373 5-251 (391)
195 KOG1587 Cytoplasmic dynein int 99.7 2.7E-15 5.8E-20 164.2 24.5 254 35-332 242-517 (555)
196 KOG1587 Cytoplasmic dynein int 99.7 4.6E-15 9.9E-20 162.4 24.9 272 61-371 221-517 (555)
197 KOG2110 Uncharacterized conser 99.7 7.9E-14 1.7E-18 138.3 30.2 238 35-332 5-249 (391)
198 KOG4497 Uncharacterized conser 99.7 1.1E-14 2.4E-19 141.6 23.5 339 46-440 14-424 (447)
199 KOG1523 Actin-related protein 99.7 1.3E-14 2.9E-19 141.1 23.5 226 35-310 10-258 (361)
200 KOG1523 Actin-related protein 99.7 1E-14 2.2E-19 141.8 21.6 243 80-368 6-276 (361)
201 PRK11028 6-phosphogluconolacto 99.7 1E-13 2.2E-18 148.1 30.3 246 36-331 35-304 (330)
202 KOG0290 Conserved WD40 repeat- 99.7 6.6E-15 1.4E-19 141.1 18.3 240 33-320 94-355 (364)
203 KOG3881 Uncharacterized conser 99.6 1.5E-14 3.2E-19 144.4 20.7 277 33-353 53-342 (412)
204 KOG1517 Guanine nucleotide bin 99.6 2.3E-14 5E-19 158.3 24.0 296 87-451 1067-1384(1387)
205 KOG1445 Tumor-specific antigen 99.6 2E-15 4.3E-20 157.8 15.0 234 100-374 598-848 (1012)
206 KOG1240 Protein kinase contain 99.6 2.9E-14 6.4E-19 160.0 24.8 283 110-452 1034-1338(1431)
207 KOG1272 WD40-repeat-containing 99.6 2.4E-15 5.2E-20 152.6 12.6 257 49-363 138-402 (545)
208 KOG2394 WD40 protein DMR-N9 [G 99.6 6E-14 1.3E-18 144.9 22.5 240 49-311 132-384 (636)
209 KOG1310 WD40 repeat protein [G 99.6 9.6E-15 2.1E-19 150.8 16.1 224 29-297 44-311 (758)
210 KOG2139 WD40 repeat protein [G 99.6 4.6E-13 9.9E-18 132.3 26.8 196 85-318 99-297 (445)
211 KOG0771 Prolactin regulatory e 99.6 2.2E-14 4.8E-19 144.8 16.3 199 39-290 148-355 (398)
212 PRK01742 tolB translocation pr 99.6 1.4E-13 3E-18 151.9 22.3 231 61-353 183-426 (429)
213 PRK01742 tolB translocation pr 99.6 7.1E-14 1.5E-18 154.2 19.6 219 32-312 200-426 (429)
214 KOG1310 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 146.6 15.0 232 211-456 44-311 (758)
215 KOG0771 Prolactin regulatory e 99.6 3.1E-14 6.7E-19 143.8 13.8 193 221-449 148-355 (398)
216 KOG1272 WD40-repeat-containing 99.6 8.8E-15 1.9E-19 148.6 9.2 230 86-369 131-361 (545)
217 KOG2111 Uncharacterized conser 99.6 1.9E-12 4.2E-17 126.2 24.6 236 39-334 9-259 (346)
218 KOG1334 WD40 repeat protein [G 99.5 8.6E-14 1.9E-18 142.3 14.9 295 76-451 134-469 (559)
219 KOG2321 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 134.9 24.8 276 33-372 49-345 (703)
220 KOG2321 WD40 repeat protein [G 99.5 2.6E-12 5.7E-17 133.9 22.9 275 82-448 49-343 (703)
221 PF02239 Cytochrom_D1: Cytochr 99.5 8.9E-12 1.9E-16 133.1 27.9 279 49-379 45-356 (369)
222 KOG2139 WD40 repeat protein [G 99.5 1.3E-11 2.7E-16 122.2 25.4 272 37-369 100-430 (445)
223 PF02239 Cytochrom_D1: Cytochr 99.5 4.6E-11 9.9E-16 127.7 31.6 323 52-456 5-355 (369)
224 KOG1354 Serine/threonine prote 99.5 1.8E-12 3.9E-17 127.3 18.4 251 35-333 25-361 (433)
225 KOG1409 Uncharacterized conser 99.5 4.5E-12 9.8E-17 124.7 21.0 328 74-449 14-395 (404)
226 PRK03629 tolB translocation pr 99.5 2.7E-11 5.8E-16 133.5 28.0 232 63-352 180-427 (429)
227 PRK04922 tolB translocation pr 99.4 3.3E-11 7.1E-16 133.3 27.6 213 105-372 184-413 (433)
228 KOG3881 Uncharacterized conser 99.4 1.3E-11 2.9E-16 123.5 20.6 244 83-375 54-325 (412)
229 PRK03629 tolB translocation pr 99.4 6.3E-11 1.4E-15 130.5 28.3 202 214-456 195-413 (429)
230 PRK04922 tolB translocation pr 99.4 2.5E-11 5.5E-16 134.2 25.2 233 62-352 184-432 (433)
231 PRK05137 tolB translocation pr 99.4 5.6E-11 1.2E-15 131.6 27.3 232 62-352 182-432 (435)
232 PRK05137 tolB translocation pr 99.4 7.7E-11 1.7E-15 130.5 28.0 158 213-372 197-368 (435)
233 PRK02889 tolB translocation pr 99.4 3.9E-11 8.4E-16 132.3 23.7 234 62-352 176-424 (427)
234 KOG2394 WD40 protein DMR-N9 [G 99.4 1E-11 2.3E-16 128.6 16.9 171 49-268 182-383 (636)
235 KOG4497 Uncharacterized conser 99.4 7.6E-11 1.7E-15 115.2 21.6 300 36-362 49-424 (447)
236 KOG2111 Uncharacterized conser 99.4 6.9E-10 1.5E-14 108.6 27.2 155 216-373 93-259 (346)
237 KOG0974 WD-repeat protein WDR6 99.4 4.3E-11 9.4E-16 133.6 20.8 274 34-372 6-290 (967)
238 PF08662 eIF2A: Eukaryotic tra 99.4 6.2E-11 1.3E-15 115.1 19.5 148 221-372 9-181 (194)
239 PRK02889 tolB translocation pr 99.3 7.4E-11 1.6E-15 130.1 22.1 221 33-312 193-425 (427)
240 PF08662 eIF2A: Eukaryotic tra 99.3 1.4E-10 3E-15 112.6 20.8 115 217-337 59-184 (194)
241 KOG1409 Uncharacterized conser 99.3 1.4E-10 3.1E-15 114.2 19.2 243 32-332 21-271 (404)
242 KOG0974 WD-repeat protein WDR6 99.3 9.4E-11 2E-15 131.0 18.7 221 53-332 62-289 (967)
243 KOG4547 WD40 repeat-containing 99.3 9.4E-11 2E-15 123.7 17.5 214 49-332 2-221 (541)
244 TIGR03300 assembly_YfgL outer 99.3 1.5E-08 3.4E-13 110.3 35.8 273 51-379 64-347 (377)
245 TIGR02800 propeller_TolB tol-p 99.2 2.1E-09 4.5E-14 119.0 25.9 213 62-332 170-398 (417)
246 PF04762 IKI3: IKI3 family; I 99.2 2.2E-08 4.8E-13 118.6 35.5 341 83-450 74-458 (928)
247 KOG2315 Predicted translation 99.2 1.5E-09 3.3E-14 113.9 21.7 294 48-353 81-411 (566)
248 PF10282 Lactonase: Lactonase, 99.2 7.9E-08 1.7E-12 102.9 35.9 280 55-370 2-322 (345)
249 KOG1064 RAVE (regulator of V-A 99.2 5.6E-11 1.2E-15 138.3 11.4 197 34-298 2207-2407(2439)
250 COG5354 Uncharacterized protei 99.2 8.4E-09 1.8E-13 107.0 25.8 320 35-373 32-398 (561)
251 PRK00178 tolB translocation pr 99.2 6.8E-09 1.5E-13 115.2 27.5 232 63-352 180-427 (430)
252 TIGR02800 propeller_TolB tol-p 99.2 4.6E-09 1E-13 116.2 26.0 158 213-372 185-356 (417)
253 KOG4190 Uncharacterized conser 99.2 1.6E-10 3.4E-15 119.8 12.1 244 77-368 728-986 (1034)
254 PF10282 Lactonase: Lactonase, 99.2 1E-07 2.2E-12 102.2 34.0 258 49-350 45-345 (345)
255 KOG2315 Predicted translation 99.2 1.1E-08 2.4E-13 107.5 25.5 310 49-372 43-392 (566)
256 PRK01029 tolB translocation pr 99.2 1.1E-08 2.4E-13 112.3 27.0 240 62-353 165-425 (428)
257 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.6E-13 109.2 28.4 267 95-456 65-346 (377)
258 KOG1064 RAVE (regulator of V-A 99.2 1.5E-10 3.3E-15 134.9 11.5 218 80-362 2204-2438(2439)
259 KOG4190 Uncharacterized conser 99.1 2.3E-10 5E-15 118.6 10.5 284 27-366 727-1032(1034)
260 KOG1354 Serine/threonine prote 99.1 2E-08 4.3E-13 99.3 22.7 274 84-373 25-362 (433)
261 PRK04792 tolB translocation pr 99.1 1.9E-08 4E-13 111.5 25.8 231 63-352 199-446 (448)
262 KOG2041 WD40 repeat protein [G 99.1 3.1E-08 6.7E-13 106.2 25.4 280 34-370 13-337 (1189)
263 KOG1912 WD40 repeat protein [G 99.1 1.8E-08 3.8E-13 109.2 23.3 284 34-375 14-369 (1062)
264 KOG0280 Uncharacterized conser 99.1 1.5E-08 3.2E-13 98.3 20.3 153 220-372 124-286 (339)
265 KOG0309 Conserved WD40 repeat- 99.1 1E-09 2.2E-14 117.8 13.6 243 8-313 5-257 (1081)
266 KOG1912 WD40 repeat protein [G 99.1 5.9E-08 1.3E-12 105.3 26.8 405 32-455 52-558 (1062)
267 COG5354 Uncharacterized protei 99.1 1.2E-07 2.6E-12 98.6 28.1 334 65-449 15-396 (561)
268 PRK00178 tolB translocation pr 99.1 4.3E-08 9.2E-13 108.8 27.2 212 106-372 180-408 (430)
269 PRK01029 tolB translocation pr 99.1 1.9E-08 4.1E-13 110.6 24.0 221 106-378 166-411 (428)
270 KOG4547 WD40 repeat-containing 99.1 1.1E-08 2.3E-13 108.5 20.0 142 228-371 69-221 (541)
271 COG4946 Uncharacterized protei 99.1 6.4E-07 1.4E-11 92.3 31.6 141 213-354 355-500 (668)
272 COG2706 3-carboxymuconate cycl 99.1 3E-07 6.4E-12 92.5 28.6 209 213-448 35-274 (346)
273 PRK04792 tolB translocation pr 99.0 1.7E-08 3.6E-13 111.9 21.3 213 36-311 218-446 (448)
274 COG5170 CDC55 Serine/threonine 99.0 3.6E-09 7.8E-14 102.9 13.5 250 33-330 24-366 (460)
275 KOG4532 WD40-like repeat conta 99.0 4.2E-08 9.1E-13 93.9 20.1 244 39-333 71-333 (344)
276 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.5E-06 3.1E-11 91.2 33.2 263 62-378 27-338 (352)
277 TIGR02658 TTQ_MADH_Hv methylam 99.0 6.5E-07 1.4E-11 93.8 30.6 267 105-457 27-339 (352)
278 KOG2314 Translation initiation 99.0 2.5E-07 5.5E-12 97.0 25.7 302 48-441 218-560 (698)
279 PLN02919 haloacid dehalogenase 99.0 5.8E-07 1.3E-11 108.8 31.9 252 40-335 572-892 (1057)
280 PF04762 IKI3: IKI3 family; I 99.0 3.7E-06 8E-11 100.0 37.8 279 34-372 74-458 (928)
281 KOG0309 Conserved WD40 repeat- 98.9 1.8E-08 3.8E-13 108.5 14.9 224 84-354 24-257 (1081)
282 PLN02919 haloacid dehalogenase 98.9 1.1E-06 2.3E-11 106.5 32.0 251 88-374 571-892 (1057)
283 KOG4532 WD40-like repeat conta 98.9 2.8E-07 6E-12 88.4 20.9 254 59-371 49-332 (344)
284 PRK11138 outer membrane biogen 98.9 1.4E-06 3.1E-11 95.3 30.1 271 52-379 69-362 (394)
285 COG2706 3-carboxymuconate cycl 98.9 7E-06 1.5E-10 82.8 31.7 274 61-371 15-322 (346)
286 KOG0280 Uncharacterized conser 98.9 3.5E-08 7.5E-13 95.8 14.6 192 48-288 129-332 (339)
287 KOG0882 Cyclophilin-related pe 98.9 1.5E-07 3.4E-12 96.3 18.8 252 82-382 7-317 (558)
288 KOG2041 WD40 repeat protein [G 98.8 1.9E-06 4.1E-11 92.9 26.9 407 30-456 66-540 (1189)
289 KOG0882 Cyclophilin-related pe 98.8 6E-08 1.3E-12 99.2 14.4 258 33-345 7-319 (558)
290 PF15492 Nbas_N: Neuroblastoma 98.8 1.4E-06 3E-11 85.3 21.9 221 223-457 3-268 (282)
291 KOG2695 WD40 repeat protein [G 98.8 2.1E-08 4.6E-13 99.2 8.6 128 216-344 251-389 (425)
292 KOG4714 Nucleoporin [Nuclear s 98.8 1.5E-07 3.2E-12 90.0 13.9 258 87-368 39-316 (319)
293 COG4946 Uncharacterized protei 98.7 3.4E-06 7.3E-11 87.1 23.9 217 48-320 274-507 (668)
294 KOG2314 Translation initiation 98.7 2.1E-06 4.5E-11 90.4 21.9 274 37-322 251-558 (698)
295 PF15492 Nbas_N: Neuroblastoma 98.7 9.3E-06 2E-10 79.6 24.9 238 49-340 6-268 (282)
296 KOG1832 HIV-1 Vpr-binding prot 98.7 1.1E-08 2.5E-13 111.9 5.2 223 28-319 1094-1319(1516)
297 PRK11138 outer membrane biogen 98.7 8E-06 1.7E-10 89.4 27.6 188 229-456 160-361 (394)
298 KOG3914 WD repeat protein WDR4 98.7 1.4E-07 3E-12 95.7 12.3 158 220-379 65-232 (390)
299 PRK04043 tolB translocation pr 98.7 6.3E-06 1.4E-10 90.1 26.1 151 219-373 189-360 (419)
300 KOG4714 Nucleoporin [Nuclear s 98.7 2.9E-07 6.4E-12 87.9 13.0 149 51-248 100-255 (319)
301 KOG3914 WD repeat protein WDR4 98.7 7.2E-07 1.6E-11 90.6 16.4 167 38-256 60-232 (390)
302 PF13360 PQQ_2: PQQ-like domai 98.6 1.8E-05 3.9E-10 80.0 26.2 222 61-337 2-236 (238)
303 COG5170 CDC55 Serine/threonine 98.6 2E-06 4.2E-11 84.2 17.2 281 84-371 26-368 (460)
304 PF13360 PQQ_2: PQQ-like domai 98.6 1.9E-05 4.1E-10 79.9 25.4 216 104-374 2-234 (238)
305 PF08450 SGL: SMP-30/Gluconola 98.6 0.00011 2.3E-09 74.8 29.4 211 49-318 8-242 (246)
306 KOG1275 PAB-dependent poly(A) 98.5 1.1E-06 2.3E-11 97.6 14.6 182 228-446 146-340 (1118)
307 PF08450 SGL: SMP-30/Gluconola 98.5 0.00016 3.5E-09 73.5 30.0 216 89-359 4-244 (246)
308 KOG1645 RING-finger-containing 98.5 8.9E-06 1.9E-10 82.7 18.8 255 64-370 175-461 (463)
309 PRK04043 tolB translocation pr 98.5 5.5E-05 1.2E-09 82.8 26.1 195 86-337 189-406 (419)
310 KOG2066 Vacuolar assembly/sort 98.4 4.9E-06 1.1E-10 91.6 15.7 152 217-381 39-198 (846)
311 KOG2695 WD40 repeat protein [G 98.4 9E-07 2E-11 87.9 8.2 167 96-310 225-401 (425)
312 cd00216 PQQ_DH Dehydrogenases 98.4 0.00049 1.1E-08 77.4 31.2 288 52-379 61-433 (488)
313 KOG1275 PAB-dependent poly(A) 98.4 5.3E-06 1.1E-10 92.3 14.7 145 219-368 179-340 (1118)
314 PF00400 WD40: WD domain, G-be 98.4 1E-06 2.2E-11 60.9 5.9 39 291-329 1-39 (39)
315 PF07433 DUF1513: Protein of u 98.4 0.00054 1.2E-08 69.5 27.4 202 129-378 7-255 (305)
316 KOG2066 Vacuolar assembly/sort 98.3 1E-05 2.2E-10 89.2 15.9 181 126-370 39-233 (846)
317 cd00216 PQQ_DH Dehydrogenases 98.3 0.0003 6.6E-09 79.0 27.9 285 95-456 61-432 (488)
318 KOG2114 Vacuolar assembly/sort 98.3 0.00013 2.9E-09 81.2 23.9 210 92-340 31-252 (933)
319 PF00400 WD40: WD domain, G-be 98.3 1.5E-06 3.2E-11 60.1 5.8 39 249-287 1-39 (39)
320 KOG1645 RING-finger-containing 98.3 1E-05 2.2E-10 82.3 13.4 93 241-334 175-269 (463)
321 KOG1920 IkappaB kinase complex 98.3 0.00024 5.2E-09 82.2 25.7 244 83-334 67-325 (1265)
322 KOG2114 Vacuolar assembly/sort 98.2 0.00014 3E-09 81.1 21.3 205 49-302 32-257 (933)
323 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0015 3.2E-08 63.2 25.5 303 52-372 23-353 (354)
324 PF07433 DUF1513: Protein of u 98.2 0.0021 4.5E-08 65.4 27.3 228 89-368 9-283 (305)
325 PF11768 DUF3312: Protein of u 98.2 0.00033 7.1E-09 75.7 22.6 111 221-333 209-331 (545)
326 KOG1832 HIV-1 Vpr-binding prot 98.2 7.9E-07 1.7E-11 97.9 2.5 219 75-358 1092-1318(1516)
327 KOG3621 WD40 repeat-containing 98.2 0.00035 7.5E-09 76.5 22.1 271 49-372 42-355 (726)
328 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0026 5.6E-08 61.6 24.4 140 229-368 63-205 (354)
329 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0023 4.9E-08 68.9 25.4 249 49-360 1-301 (353)
330 PRK02888 nitrous-oxide reducta 97.9 0.00076 1.7E-08 74.7 19.7 145 225-371 200-405 (635)
331 KOG3621 WD40 repeat-containing 97.9 0.00083 1.8E-08 73.6 19.6 136 127-310 34-179 (726)
332 PF04841 Vps16_N: Vps16, N-ter 97.9 0.014 3E-07 63.9 29.6 211 106-368 62-285 (410)
333 PF06977 SdiA-regulated: SdiA- 97.8 0.0097 2.1E-07 59.6 24.6 198 121-367 16-247 (248)
334 KOG1920 IkappaB kinase complex 97.8 0.0032 7E-08 73.2 23.5 197 36-291 69-324 (1265)
335 PF11768 DUF3312: Protein of u 97.8 0.0019 4.1E-08 69.9 20.5 77 214-292 256-332 (545)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.04 8.6E-07 62.3 31.4 305 52-380 69-500 (527)
337 KOG1008 Uncharacterized conser 97.8 9.2E-06 2E-10 87.2 1.8 198 87-331 59-275 (783)
338 PF04053 Coatomer_WDAD: Coatom 97.7 0.0024 5.2E-08 69.8 19.9 220 82-371 30-263 (443)
339 KOG3617 WD40 and TPR repeat-co 97.7 0.00066 1.4E-08 75.3 15.1 105 48-158 23-132 (1416)
340 KOG1008 Uncharacterized conser 97.7 1.2E-05 2.5E-10 86.4 1.3 197 127-371 57-276 (783)
341 PF00780 CNH: CNH domain; Int 97.7 0.0081 1.8E-07 62.2 21.9 148 227-378 5-173 (275)
342 PF08596 Lgl_C: Lethal giant l 97.6 0.0065 1.4E-07 65.5 21.2 236 37-319 3-324 (395)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.053 1.2E-06 61.3 29.2 99 238-336 180-338 (527)
344 PF04841 Vps16_N: Vps16, N-ter 97.6 0.098 2.1E-06 57.2 30.4 213 49-311 37-269 (410)
345 PF06433 Me-amine-dh_H: Methyl 97.6 0.024 5.2E-07 58.5 23.2 82 261-343 239-332 (342)
346 PF08596 Lgl_C: Lethal giant l 97.6 0.041 8.8E-07 59.5 26.3 237 128-379 3-299 (395)
347 PF14583 Pectate_lyase22: Olig 97.6 0.14 2.9E-06 54.1 29.0 297 41-370 36-381 (386)
348 PF00780 CNH: CNH domain; Int 97.6 0.07 1.5E-06 55.1 27.3 239 95-381 7-266 (275)
349 PF04053 Coatomer_WDAD: Coatom 97.5 0.012 2.5E-07 64.6 21.4 167 124-354 30-208 (443)
350 COG3391 Uncharacterized conser 97.5 0.14 3E-06 55.7 29.6 242 86-379 32-292 (381)
351 PF06977 SdiA-regulated: SdiA- 97.5 0.032 6.8E-07 56.0 22.1 208 79-328 16-247 (248)
352 PF06433 Me-amine-dh_H: Methyl 97.5 0.13 2.9E-06 53.2 26.7 151 230-380 148-330 (342)
353 KOG3617 WD40 and TPR repeat-co 97.4 0.0062 1.3E-07 68.0 16.6 71 219-289 61-131 (1416)
354 PRK02888 nitrous-oxide reducta 97.4 0.04 8.7E-07 61.5 22.8 196 228-449 140-405 (635)
355 COG0823 TolB Periplasmic compo 97.3 0.02 4.3E-07 62.5 19.7 165 207-373 182-361 (425)
356 COG3391 Uncharacterized conser 97.3 0.061 1.3E-06 58.4 23.4 201 220-457 76-292 (381)
357 KOG4640 Anaphase-promoting com 97.2 0.0014 2.9E-08 71.2 9.4 93 217-310 20-114 (665)
358 PF03178 CPSF_A: CPSF A subuni 97.2 0.066 1.4E-06 56.8 22.0 148 215-367 86-262 (321)
359 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.028 6.1E-07 47.9 14.7 100 261-366 1-110 (111)
360 COG3386 Gluconolactonase [Carb 97.1 0.17 3.6E-06 52.8 23.2 107 213-320 158-274 (307)
361 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.031 6.8E-07 47.7 14.3 104 38-152 2-109 (111)
362 smart00320 WD40 WD40 repeats. 97.0 0.0022 4.9E-08 42.6 5.9 39 291-329 2-40 (40)
363 COG0823 TolB Periplasmic compo 97.0 0.03 6.4E-07 61.2 17.3 178 48-279 200-389 (425)
364 KOG4640 Anaphase-promoting com 96.9 0.0039 8.5E-08 67.7 9.1 94 259-353 20-116 (665)
365 COG3386 Gluconolactonase [Carb 96.9 0.32 6.8E-06 50.7 23.0 138 221-360 114-275 (307)
366 smart00320 WD40 WD40 repeats. 96.9 0.0028 6E-08 42.2 5.4 39 249-287 2-40 (40)
367 PF03178 CPSF_A: CPSF A subuni 96.8 0.2 4.3E-06 53.2 21.8 173 239-448 2-202 (321)
368 PF08553 VID27: VID27 cytoplas 96.8 0.025 5.4E-07 65.4 15.1 141 270-448 492-647 (794)
369 PRK13616 lipoprotein LpqB; Pro 96.8 0.077 1.7E-06 60.6 18.9 145 218-369 350-524 (591)
370 KOG2444 WD40 repeat protein [G 96.7 0.004 8.8E-08 59.5 6.8 143 97-290 32-178 (238)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.27 5.8E-06 53.2 20.7 88 212-299 302-408 (415)
372 PRK13616 lipoprotein LpqB; Pro 96.6 0.15 3.3E-06 58.1 20.1 140 220-365 399-563 (591)
373 KOG4441 Proteins containing BT 96.6 0.17 3.8E-06 57.7 20.0 227 51-333 284-548 (571)
374 PF08553 VID27: VID27 cytoplas 96.5 0.042 9E-07 63.6 14.8 141 229-370 493-647 (794)
375 KOG1897 Damage-specific DNA bi 96.5 2.4 5.1E-05 49.5 31.5 319 49-452 266-619 (1096)
376 COG3490 Uncharacterized protei 96.5 0.33 7.3E-06 48.2 18.4 153 224-376 120-316 (366)
377 TIGR03074 PQQ_membr_DH membran 96.5 0.53 1.1E-05 55.3 23.6 112 229-341 194-354 (764)
378 PF14583 Pectate_lyase22: Olig 96.4 0.58 1.3E-05 49.5 20.8 147 224-370 42-222 (386)
379 PF05096 Glu_cyclase_2: Glutam 96.4 1 2.2E-05 45.2 21.4 194 261-490 46-248 (264)
380 PF02897 Peptidase_S9_N: Proly 96.3 2.3 5.1E-05 46.7 29.6 238 49-337 132-410 (414)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 1.1 2.3E-05 48.7 22.4 85 49-135 10-117 (415)
382 KOG2079 Vacuolar assembly/sort 96.2 0.016 3.5E-07 66.8 9.0 97 229-325 99-199 (1206)
383 KOG1897 Damage-specific DNA bi 96.2 3.6 7.9E-05 48.0 27.4 149 219-370 776-942 (1096)
384 COG3490 Uncharacterized protei 96.2 0.94 2E-05 45.2 19.4 140 221-360 71-244 (366)
385 PRK13684 Ycf48-like protein; P 96.2 2.3 4.9E-05 45.3 28.6 148 217-369 172-330 (334)
386 PHA02713 hypothetical protein; 96.2 0.39 8.6E-06 54.9 20.0 91 240-334 433-536 (557)
387 PF14870 PSII_BNR: Photosynthe 96.1 2.2 4.7E-05 44.3 32.7 110 256-366 141-257 (302)
388 KOG2395 Protein involved in va 96.1 0.088 1.9E-06 56.5 12.7 141 228-370 344-500 (644)
389 PF14870 PSII_BNR: Photosynthe 96.0 2.3 5.1E-05 44.1 31.3 148 215-367 142-301 (302)
390 KOG4441 Proteins containing BT 95.9 0.68 1.5E-05 52.9 19.9 141 228-372 380-548 (571)
391 PHA02713 hypothetical protein; 95.8 0.51 1.1E-05 54.0 18.6 150 228-379 351-542 (557)
392 PF00930 DPPIV_N: Dipeptidyl p 95.8 3.6 7.7E-05 44.2 26.9 256 36-354 43-339 (353)
393 KOG2079 Vacuolar assembly/sort 95.7 0.054 1.2E-06 62.7 10.0 71 216-288 129-202 (1206)
394 COG5276 Uncharacterized conser 95.6 2.9 6.2E-05 42.1 29.6 197 83-333 85-287 (370)
395 KOG2444 WD40 repeat protein [G 95.5 0.047 1E-06 52.5 7.5 102 229-330 70-176 (238)
396 PF02897 Peptidase_S9_N: Proly 95.5 5 0.00011 44.2 28.3 154 220-375 229-409 (414)
397 KOG2280 Vacuolar assembly/sort 95.4 1.1 2.4E-05 50.6 18.1 187 62-256 64-255 (829)
398 COG3204 Uncharacterized protei 95.3 3.7 8E-05 41.5 21.1 146 221-367 132-309 (316)
399 KOG4499 Ca2+-binding protein R 95.2 1.1 2.4E-05 43.4 15.3 174 54-269 73-263 (310)
400 COG3204 Uncharacterized protei 95.1 3.2 7E-05 41.9 18.9 116 255-370 81-210 (316)
401 KOG2395 Protein involved in va 95.1 0.28 6.1E-06 52.8 12.3 140 53-246 346-499 (644)
402 PRK10115 protease 2; Provision 95.0 7.8 0.00017 45.6 25.3 111 218-330 127-254 (686)
403 KOG1916 Nuclear protein, conta 94.9 0.014 3E-07 65.9 2.1 189 104-336 110-328 (1283)
404 TIGR03074 PQQ_membr_DH membran 94.9 5.5 0.00012 47.1 23.3 67 95-162 194-283 (764)
405 TIGR02604 Piru_Ver_Nterm putat 94.8 0.93 2E-05 49.0 16.0 141 218-360 14-202 (367)
406 PF05694 SBP56: 56kDa selenium 94.7 2.5 5.3E-05 45.4 18.0 202 228-449 86-343 (461)
407 KOG2280 Vacuolar assembly/sort 94.6 1.2 2.7E-05 50.2 16.1 177 279-457 62-255 (829)
408 PF05694 SBP56: 56kDa selenium 94.5 8.3 0.00018 41.5 21.9 152 223-374 135-346 (461)
409 PF12894 Apc4_WD40: Anaphase-p 94.5 0.12 2.6E-06 36.9 5.4 36 216-252 10-45 (47)
410 PF05096 Glu_cyclase_2: Glutam 94.4 6.2 0.00014 39.7 20.1 156 220-379 47-212 (264)
411 PRK13684 Ycf48-like protein; P 94.4 8.3 0.00018 41.0 30.0 104 259-365 172-283 (334)
412 cd01612 APG12_C Ubiquitin-like 94.3 0.25 5.3E-06 40.6 7.6 83 637-762 1-84 (87)
413 PF15390 DUF4613: Domain of un 94.2 2.2 4.7E-05 47.1 16.5 144 216-360 55-221 (671)
414 PF12234 Rav1p_C: RAVE protein 94.2 1.2 2.6E-05 50.6 15.2 111 260-370 30-156 (631)
415 KOG4499 Ca2+-binding protein R 93.8 7.1 0.00015 38.0 19.3 98 221-318 161-271 (310)
416 PF10647 Gmad1: Lipoprotein Lp 93.6 9.2 0.0002 38.8 23.5 105 219-323 67-187 (253)
417 KOG2660 Locus-specific chromos 93.5 0.073 1.6E-06 53.8 3.9 40 724-763 195-236 (331)
418 PF12894 Apc4_WD40: Anaphase-p 93.5 0.25 5.4E-06 35.3 5.4 34 259-293 11-44 (47)
419 PHA03098 kelch-like protein; P 93.3 3.2 7E-05 47.4 17.5 104 51-158 294-415 (534)
420 PF10168 Nup88: Nuclear pore c 93.2 17 0.00036 42.8 22.8 35 460-494 282-318 (717)
421 COG4590 ABC-type uncharacteriz 93.1 2.3 4.9E-05 45.2 13.8 166 211-377 214-393 (733)
422 PF10647 Gmad1: Lipoprotein Lp 93.1 6.7 0.00015 39.8 17.5 106 261-369 25-143 (253)
423 PHA03098 kelch-like protein; P 92.9 5.6 0.00012 45.4 18.7 103 228-334 389-514 (534)
424 cd01611 GABARAP Ubiquitin doma 92.4 0.84 1.8E-05 39.5 8.2 89 634-762 21-109 (112)
425 PF02991 Atg8: Autophagy prote 92.0 1.3 2.9E-05 37.6 8.9 86 635-760 14-99 (104)
426 COG1520 FOG: WD40-like repeat 91.9 13 0.00028 40.2 19.0 144 230-375 69-222 (370)
427 COG3823 Glutamine cyclotransfe 91.8 5.7 0.00012 38.0 13.3 155 270-456 55-212 (262)
428 PF07995 GSDH: Glucose / Sorbo 91.2 23 0.0005 37.6 24.6 67 260-326 253-330 (331)
429 TIGR02604 Piru_Ver_Nterm putat 91.1 7.4 0.00016 42.0 16.0 99 219-320 73-202 (367)
430 PHA02790 Kelch-like protein; P 91.1 7.5 0.00016 43.7 16.5 137 229-371 272-424 (480)
431 KOG3630 Nuclear pore complex, 91.0 3.9 8.5E-05 48.5 13.8 136 218-354 101-255 (1405)
432 PRK10115 protease 2; Provision 90.9 40 0.00086 39.8 30.3 112 37-157 128-255 (686)
433 PF14727 PHTB1_N: PTHB1 N-term 90.7 29 0.00062 37.9 30.0 281 38-373 22-363 (418)
434 PHA02790 Kelch-like protein; P 90.6 12 0.00027 41.9 17.7 104 51-158 271-385 (480)
435 PF15390 DUF4613: Domain of un 90.3 8.1 0.00018 42.8 14.8 147 217-371 19-187 (671)
436 PLN00033 photosystem II stabil 90.1 32 0.00069 37.4 26.0 107 217-328 280-396 (398)
437 PF07995 GSDH: Glucose / Sorbo 89.5 32 0.00069 36.5 24.1 64 302-365 253-330 (331)
438 TIGR03118 PEPCTERM_chp_1 conse 89.4 28 0.0006 35.7 26.7 230 49-311 31-307 (336)
439 KOG1983 Tomosyn and related SN 89.2 65 0.0014 39.6 23.4 72 216-293 197-268 (993)
440 PF14781 BBS2_N: Ciliary BBSom 89.1 8.4 0.00018 34.3 11.4 107 265-373 4-128 (136)
441 PF12234 Rav1p_C: RAVE protein 88.8 8 0.00017 44.2 14.1 106 223-330 35-155 (631)
442 KOG3630 Nuclear pore complex, 88.7 5.9 0.00013 47.1 12.9 179 49-276 50-260 (1405)
443 COG3823 Glutamine cyclotransfe 88.6 18 0.00038 34.8 13.8 149 228-379 55-213 (262)
444 PF08801 Nucleoporin_N: Nup133 88.6 14 0.0003 40.8 16.0 168 262-449 29-220 (422)
445 KOG1916 Nuclear protein, conta 88.0 0.13 2.8E-06 58.6 -0.6 118 33-158 130-256 (1283)
446 PF10168 Nup88: Nuclear pore c 87.8 20 0.00043 42.2 16.9 72 217-288 84-178 (717)
447 COG5276 Uncharacterized conser 87.8 34 0.00074 34.8 24.7 156 217-378 86-249 (370)
448 PF10313 DUF2415: Uncharacteri 87.7 1.7 3.7E-05 30.1 4.9 32 127-158 1-34 (43)
449 PF07569 Hira: TUP1-like enhan 87.6 2.5 5.5E-05 41.7 8.4 67 309-375 18-100 (219)
450 KOG1900 Nuclear pore complex, 87.6 3.6 7.9E-05 49.6 10.7 159 278-449 96-273 (1311)
451 KOG2377 Uncharacterized conser 86.9 49 0.0011 35.7 18.0 117 216-334 65-188 (657)
452 KOG4659 Uncharacterized conser 86.7 83 0.0018 38.7 20.4 39 30-71 342-385 (1899)
453 COG5167 VID27 Protein involved 86.7 14 0.00031 40.1 13.4 141 227-370 477-632 (776)
454 PF08728 CRT10: CRT10; InterP 86.7 28 0.0006 40.4 16.7 112 218-330 101-245 (717)
455 TIGR03118 PEPCTERM_chp_1 conse 86.3 43 0.00092 34.4 20.5 113 219-331 24-170 (336)
456 PF10313 DUF2415: Uncharacteri 86.2 3.3 7.1E-05 28.8 5.6 32 218-249 1-35 (43)
457 PF08728 CRT10: CRT10; InterP 86.1 22 0.00048 41.2 15.5 139 229-369 49-245 (717)
458 KOG4460 Nuclear pore complex, 86.0 10 0.00022 41.3 12.0 27 261-287 105-131 (741)
459 KOG2377 Uncharacterized conser 85.9 36 0.00078 36.6 15.7 102 34-142 65-168 (657)
460 PF07569 Hira: TUP1-like enhan 85.5 4.3 9.4E-05 40.1 8.7 64 267-331 18-95 (219)
461 PF04110 APG12: Ubiquitin-like 85.3 3.5 7.5E-05 33.7 6.4 83 637-762 1-84 (87)
462 COG3292 Predicted periplasmic 85.1 45 0.00097 37.1 16.4 259 84-366 164-443 (671)
463 PF14727 PHTB1_N: PTHB1 N-term 85.0 64 0.0014 35.3 27.9 151 97-288 39-203 (418)
464 COG4257 Vgb Streptogramin lyas 84.8 47 0.001 33.5 17.0 191 221-446 65-260 (353)
465 PF14781 BBS2_N: Ciliary BBSom 84.4 30 0.00064 30.9 13.8 111 224-338 5-132 (136)
466 PF02333 Phytase: Phytase; In 84.4 63 0.0014 34.7 21.8 202 49-297 65-299 (381)
467 KOG2247 WD40 repeat-containing 84.2 0.11 2.4E-06 55.2 -3.2 142 220-366 37-184 (615)
468 KOG2247 WD40 repeat-containing 84.0 0.52 1.1E-05 50.4 1.5 235 90-377 40-287 (615)
469 PF02333 Phytase: Phytase; In 83.8 67 0.0014 34.5 21.3 141 227-371 66-238 (381)
470 PF14761 HPS3_N: Hermansky-Pud 83.5 46 0.00099 32.4 14.4 102 230-333 29-165 (215)
471 PF10433 MMS1_N: Mono-function 82.9 90 0.002 35.3 22.1 253 49-352 219-503 (504)
472 PF13449 Phytase-like: Esteras 82.8 67 0.0014 34.0 17.0 101 260-361 20-167 (326)
473 PRK14131 N-acetylneuraminic ac 82.7 76 0.0016 34.3 20.3 21 51-71 38-59 (376)
474 KOG4460 Nuclear pore complex, 82.5 18 0.00038 39.6 11.9 100 217-338 103-205 (741)
475 KOG2063 Vacuolar assembly/sort 81.6 1E+02 0.0022 37.0 18.7 62 51-112 25-95 (877)
476 KOG1983 Tomosyn and related SN 81.5 17 0.00036 44.5 13.1 33 217-249 35-67 (993)
477 PF05935 Arylsulfotrans: Aryls 79.7 71 0.0015 35.8 16.6 115 223-341 153-311 (477)
478 PF10214 Rrn6: RNA polymerase 79.4 1.5E+02 0.0032 35.6 26.5 75 82-156 77-175 (765)
479 PF11715 Nup160: Nucleoporin N 78.3 9.6 0.00021 43.7 9.4 74 227-300 156-259 (547)
480 PLN00033 photosystem II stabil 78.1 1.1E+02 0.0024 33.3 32.6 144 218-367 239-396 (398)
481 PF07250 Glyoxal_oxid_N: Glyox 78.0 32 0.00069 34.5 11.6 34 423-458 174-207 (243)
482 TIGR03606 non_repeat_PQQ dehyd 77.9 1.2E+02 0.0026 33.6 19.4 104 217-322 29-166 (454)
483 TIGR03547 muta_rot_YjhT mutatr 77.8 1E+02 0.0022 32.8 20.7 11 138-148 118-128 (346)
484 PF05935 Arylsulfotrans: Aryls 77.3 90 0.002 35.0 16.5 140 237-381 126-312 (477)
485 COG5167 VID27 Protein involved 77.3 35 0.00076 37.3 12.1 61 270-331 572-632 (776)
486 PF13449 Phytase-like: Esteras 77.3 1E+02 0.0022 32.6 17.9 60 219-279 86-166 (326)
487 PF13764 E3_UbLigase_R4: E3 ub 76.7 4 8.6E-05 48.0 5.6 38 724-761 39-79 (802)
488 PF11635 Med16: Mediator compl 76.6 1.7E+02 0.0038 34.9 20.1 69 216-284 258-345 (753)
489 TIGR03606 non_repeat_PQQ dehyd 76.6 72 0.0016 35.3 14.9 104 259-362 29-166 (454)
490 PF08801 Nucleoporin_N: Nup133 76.5 1.3E+02 0.0027 33.2 18.1 31 302-332 190-220 (422)
491 KOG3616 Selective LIM binding 76.4 4.9 0.00011 45.3 5.8 70 302-371 15-84 (1636)
492 TIGR02276 beta_rpt_yvtn 40-res 76.1 13 0.00028 25.3 6.1 40 269-309 1-41 (42)
493 TIGR03548 mutarot_permut cycli 75.7 1.1E+02 0.0024 32.1 20.8 23 228-250 171-197 (323)
494 KOG1900 Nuclear pore complex, 75.4 35 0.00076 41.7 12.7 133 236-371 96-273 (1311)
495 PF12768 Rax2: Cortical protei 75.2 48 0.001 34.1 12.3 94 239-333 16-125 (281)
496 TIGR02276 beta_rpt_yvtn 40-res 74.8 13 0.00029 25.2 5.9 40 311-350 1-41 (42)
497 COG3292 Predicted periplasmic 74.5 1.5E+02 0.0033 33.2 17.1 128 240-371 355-492 (671)
498 PF14761 HPS3_N: Hermansky-Pud 70.3 1.1E+02 0.0024 29.8 15.2 106 263-371 21-164 (215)
499 PF12657 TFIIIC_delta: Transcr 70.1 25 0.00054 33.3 8.5 31 302-332 86-122 (173)
500 COG4590 ABC-type uncharacteriz 70.0 16 0.00034 39.1 7.4 106 228-335 279-390 (733)
No 1
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-110 Score=863.68 Aligned_cols=681 Identities=43% Similarity=0.745 Sum_probs=546.2
Q ss_pred ccceeeEEEEEeCCCCCCCCCCee---EEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCc----cceeeccccccee
Q 046871 16 PRKEKRLTYVLNNSDDTKHCAGIN---CLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS----CSATFESHVDWVN 88 (764)
Q Consensus 16 p~~~~~~~~~~~~~~~~gH~~~V~---~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~----~~~~l~~h~~~V~ 88 (764)
.+++++++|++++.....|+.+|+ ++..+ -|.++||+|||+||+|++|++.....+ ++.+++.|.+||+
T Consensus 2 ~rkk~kvsyVi~D~~e~qn~~~v~~~~~Lq~d----a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN 77 (735)
T KOG0308|consen 2 TRKKKKVSYVIRDENEKQNRNGVNITKALQLD----APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN 77 (735)
T ss_pred CcceeEEEEEccchhhhhccccccchhhcccc----CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh
Confidence 367789999999999999999999 55543 367789999999999999998765443 6888999999999
Q ss_pred EEEEeCCC-eEEEEeCCCcEEEecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 046871 89 DAVLVGDN-TLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSG 166 (764)
Q Consensus 89 ~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~ 166 (764)
+++.+.++ .|+|+|.|.+|++|+....+ .|+.+++.|.++|.|+++..++..++|+||.|+.|++||++++......
T Consensus 78 DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~- 156 (735)
T KOG0308|consen 78 DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA- 156 (735)
T ss_pred hHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhh-
Confidence 99999887 89999999999999986654 7889999999999999995488999999999999999999976321000
Q ss_pred CCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceec-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 046871 167 DAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA-KGHKESVYALAMNDSGNLLVSGGTEKVVRVWD 245 (764)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd 245 (764)
..+ ......+ .++..+||+++.++.|..|++|+.++.+++||
T Consensus 157 ---------------------------s~n----------~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 157 ---------------------------SFN----------NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred ---------------------------hcc----------ccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 000 0001112 28899999999999999999999999999999
Q ss_pred CCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcE
Q 046871 246 PRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSL 325 (764)
Q Consensus 246 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I 325 (764)
.++++.+.+++||+++|+++..++||+.++++|+||+|++||+..++|+.++..|...||++..+|+..++++|++||.|
T Consensus 200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CeEEEEeecCCCeEEEEeeC--CceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCC
Q 046871 326 YLTDLAT-RESLLLCTGEHPILQLALHD--DNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGST 402 (764)
Q Consensus 326 ~iwd~~~-~~~~~~~~~~~~V~~l~~sp--d~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 402 (764)
..-|+++ .+....+...++|..+..+. +.+++++.|+.|+.|...-......... +.+ ...+...
T Consensus 280 ~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~--------~~~----~~T~~~~ 347 (735)
T KOG0308|consen 280 YRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD--------LDF----FSTDSNN 347 (735)
T ss_pred EecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCC--------CCc----ccccCCC
Confidence 9999998 56677888899999998874 4499999999999998764322111110 000 0111122
Q ss_pred CcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhhhcccccccceEEee
Q 046871 403 PVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDT 482 (764)
Q Consensus 403 ~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~~~~~~~~~w~~vd~ 482 (764)
........|..+++|..+|.++++++|+|+++|-+..|++.+||+..|+.+.+|++.+|+++.+++++++++|.||+||.
T Consensus 348 ~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~gk~~FE~iv~k~~~~v~IP~WftVd~ 427 (735)
T KOG0308|consen 348 HSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFGKVDFEEIVKKLFKQVYIPSWFTVDL 427 (735)
T ss_pred ccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcccccHHHHHHhhcceEeecccEEEee
Confidence 22224446889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeCCCCccCcccccccccCCCC--CCCcceehhHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCcccCc-cc
Q 046871 483 RLGSLSVHLDTPQCFSAEMYSADLQIAGK--PEDDKVNLARETLKGLLAHWLAKRKLRLGSQATVNGDVLSAKDISA-RS 559 (764)
Q Consensus 483 ~~g~l~v~l~~~~~f~~~~~a~~~~~~~~--~~d~~vn~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 559 (764)
|+|||+|+|+|+.||+||+|++|.++... .+|.|||||+|+|++||++||.++.+.+.....|.+|+....+.-. .+
T Consensus 428 k~GmL~VtLde~~~~saevy~kd~~~~~~d~~sd~kiNlG~~~Lk~Lf~~wi~~e~h~ppp~~~p~~D~~~~d~~~~n~~ 507 (735)
T KOG0308|consen 428 KLGMLTVTLDEPDCFSAEVYSKDAGVSNNDETSDIKINLGKLLLKSLFEEWISYEVHGPPPHSAPATDEAEDDDLELNKS 507 (735)
T ss_pred ccCceEEEeCCcchhhheeeHhhcCccCCCCcccceeehHHHHHHHHHHHHHhhcccCCCCccCCccccccCcchhhccc
Confidence 99999999999999999999999998754 4799999999999999999999887644322222222211000000 00
Q ss_pred ccccccccCCCCCCCCcccCCCCcCCCCCCeEEeecCCCCCeEEEe-----ecc----cCCcccccCchhHHHHhhcCCC
Q 046871 560 LTHSRVEVDGNAENDSVVYPPFEFSTISPPSIITEGSQGSPWRKKI-----TDL----DGTEDDKDFPWWCLDCVLNNRL 630 (764)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----~~~----~~~~~~~~~p~w~~~~~~~~~~ 630 (764)
+.++ ...++...-.|. .||+||+|.++...+|..+ |+. .++++|++.|+|+.|.++.|++
T Consensus 508 ~~~s-----~~~~~~~~s~P~------hTP~i~se~~p~s~~r~~~f~~~~r~a~~e~~st~~~~~~Pqw~~D~~~~~n~ 576 (735)
T KOG0308|consen 508 FRSS-----SGRANGYFSVPE------HTPVIFSEAGPRSLLRLLSFKRSSRDAGGEFESTLLEKTAPQWVIDAVEQNNL 576 (735)
T ss_pred hhcc-----ccccCCcccCCC------CCCeeeccCCCchheeecccccccccccccccccccccccchHHHHHHHhccC
Confidence 0000 001111111222 3889999875544477766 555 4678999999999999999999
Q ss_pred CCCCCcceeEEEeeCCCCc-ccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 046871 631 PPRENTKCSFYLHPCEGSA-VQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDG 709 (764)
Q Consensus 631 ~~~~~~k~~f~l~p~~~~~-~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (764)
|+.++.|++|+|+|++++. ++..+.+||+|+|||||+||++||+||+....+..+..-| ++ ...++..+....+++
T Consensus 577 p~~k~~kl~f~l~p~~~~~~~k~~k~~rlsa~~il~v~kV~~Hv~eKvl~~~~~~p~~~D-~~--~~~g~~~n~~~~~~e 653 (735)
T KOG0308|consen 577 PYQKFNKLPFYLQPHPSSSVPKTPKKDRLSAIRILQVHKVMEHVYEKVLNLNLLPPSHVD-NE--PVSGGSPNSLPPGDE 653 (735)
T ss_pred chhhhccchhhhccCCCCCCCCccccccccHHHHHHHHHHHHHHHHHHhhcCCCCccccc-cc--cccCCCCCCCCCccc
Confidence 9999999999999999987 7788999999999999999999999999432222111111 11 222232222211233
Q ss_pred CccCCcccccCCCCcEEEEeC--------C------EecCCCCCHHHHhhccccCCCcEEEEEEEeeCC
Q 046871 710 SFRSGLKSWQKLRPSIEILCN--------N------QVLSPDMSLATVRAYVWKKPEDLVLNYRVVQGK 764 (764)
Q Consensus 710 ~~~~~~~~~~~~~~~~el~c~--------~------~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~~~~ 764 (764)
..+++.+++.++||.|||||| | |||+|+||||||||||||+++||+||||+++.+
T Consensus 654 e~~~~~~~~e~lee~iellcn~~~f~~~~D~~~~~fqVldPdM~L~TVr~~iWKs~gDlvl~Yr~k~~~ 722 (735)
T KOG0308|consen 654 EVDSQRQIFEQLEEKIELLCNKALFRDPTDLPRISFQVLDPDMDLRTVRHLIWKSSGDLVLHYRVKVHN 722 (735)
T ss_pred cchhhhhHHHhhhhhhHHHhccccccCcCCccccceEEeCCCCcHHHhhhheecCCCcEEEEEeeeccc
Confidence 333334566789999999999 9 999999999999999999999999999999763
No 2
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=100.00 E-value=3.8e-56 Score=463.40 Aligned_cols=285 Identities=41% Similarity=0.707 Sum_probs=222.1
Q ss_pred EEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhhhcccccccceEEeeCceeEEEEe--CCCCccCcccc
Q 046871 425 EILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHL--DTPQCFSAEMY 502 (764)
Q Consensus 425 ~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~~~~~~~~~w~~vd~~~g~l~v~l--~~~~~f~~~~~ 502 (764)
..++|.++++|.+.+|.|.+||+.+++.+.++++.+|+...++. .+++.||++|+++|++.++| ++.+||.++++
T Consensus 2 ~iln~rr~vltkd~~~~v~l~d~~~~~~~~~~g~~~~~~~~~~~---~~~p~~~~vd~k~g~~~itl~~~~~~~f~~~~~ 78 (331)
T PF11816_consen 2 HILNDRRHVLTKDTSGNVALWDVLSGKKVETPGKVDFEEEIKEL---VSSPSWFTVDTKTGKLSITLFGKKFRCFSSWLS 78 (331)
T ss_pred ccccccceeccCCCCCCcccCccccCCccCCCCCCCcccccccc---ccCCCcCcccCcCCccccccCCCcchhhhHHHH
Confidence 45679999999999999999999999999999999999887777 88999999999999999999 88999999988
Q ss_pred c-------------------ccccCCCCCCCcceehhHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCcccCccccccc
Q 046871 503 S-------------------ADLQIAGKPEDDKVNLARETLKGLLAHWLAKRKLRLGSQATVNGDVLSAKDISARSLTHS 563 (764)
Q Consensus 503 a-------------------~~~~~~~~~~d~~vn~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (764)
+ .+........+.++|+|..+++.+++.|-.... ... + .......|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~yw~~~~~-~~~-~-~~~s~~~p~~---------- 145 (331)
T PF11816_consen 79 KKLGRSYSQAYPNNPSSKKSSDSSSSKAEKDPKDNLGGLLLRILLEYWERLAC-NPD-Q-LLESTITPSS---------- 145 (331)
T ss_pred hhcccccccccccccccccccccccccCCCccccchHHHHHHHHHHhcccccc-Ccc-c-cccccCCCCC----------
Confidence 3 333444455678899999999999999942100 000 0 0000000000
Q ss_pred ccccCCCCCCCCcccCCCCcCCCCCCeEEeecC---CCC--CeEEEeecccCC--cccccCchhHHHHhhcCCCCCCCCc
Q 046871 564 RVEVDGNAENDSVVYPPFEFSTISPPSIITEGS---QGS--PWRKKITDLDGT--EDDKDFPWWCLDCVLNNRLPPRENT 636 (764)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~~~--~~~~~~~~~~~~--~~~~~~p~w~~~~~~~~~~~~~~~~ 636 (764)
.++ .|.+.. ...++|||+|++ +++ .||++|++++++ .+|+.+|+||+||||.|++|+|+++
T Consensus 146 --------~~~---~p~l~l-P~~t~vii~E~~~~~g~~~~l~r~~v~~~~~~~e~le~~~P~Wl~d~ll~n~~p~ke~~ 213 (331)
T PF11816_consen 146 --------PNE---TPVLSL-PPDTPVIISEESPDSGGGRDLYRGLVGDIGGDEEELEKNLPMWLADCLLHNRIPPKEPP 213 (331)
T ss_pred --------ccc---CCcccC-CCCCceEeccccCCCCccceeeeeecchhhhHHHHHHhhCcHHHHHHhhcCCCCCCCCC
Confidence 001 111111 123789999962 222 399999999765 4889999999999999999999999
Q ss_pred ceeEEEeeCCCCcccccccC-----------------ccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC
Q 046871 637 KCSFYLHPCEGSAVQILTQG-----------------KLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGG 699 (764)
Q Consensus 637 k~~f~l~p~~~~~~~~~~~~-----------------~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (764)
||+|+|+||++++++.++++ ||+|+||||||||++||+|||+ ..|++... .
T Consensus 214 Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~-~~~~~~~~-~---------- 281 (331)
T PF11816_consen 214 KISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLE-KTPESKTP-E---------- 281 (331)
T ss_pred eeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhc-cCccccCc-c----------
Confidence 99999999998877776666 9999999999999999999996 33332210 0
Q ss_pred CCCCCCCCCCCccCCcccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEEeeC
Q 046871 700 PLQSSAVGDGSFRSGLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVVQG 763 (764)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~~~ 763 (764)
+.+ ...+++++|||+||||+|||+|||||||+||||+|+||+||||++++
T Consensus 282 -----------~~~---~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~~ 331 (331)
T PF11816_consen 282 -----------MKP---KKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKGK 331 (331)
T ss_pred -----------ccc---cCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecCC
Confidence 000 01257999999999999999999999999999999999999999864
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-50 Score=391.16 Aligned_cols=339 Identities=24% Similarity=0.342 Sum_probs=299.3
Q ss_pred ccceeeEEEEEeC-CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeC
Q 046871 16 PRKEKRLTYVLNN-SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVG 94 (764)
Q Consensus 16 p~~~~~~~~~~~~-~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~ 94 (764)
|....++.-+.+. ....||..+|.|++| ||+|.+|+||+.|.++|+||+.+ .....+.++|..||.|++|+|
T Consensus 95 pqavfrvrpvtrCssS~~GH~e~Vl~~~f-----sp~g~~l~tGsGD~TvR~WD~~T--eTp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 95 PQAVFRVRPVTRCSSSIAGHGEAVLSVQF-----SPTGSRLVTGSGDTTVRLWDLDT--ETPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred cchhhcccccceeccccCCCCCcEEEEEe-----cCCCceEEecCCCceEEeeccCC--CCcceeecCCccEEEEEEECC
Confidence 4444455555443 345899999999999 89999999999999999999999 677999999999999999999
Q ss_pred CC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEec----CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC
Q 046871 95 DN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAE----KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 169 (764)
Q Consensus 95 d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p----~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~ 169 (764)
|+ .|++|+.||+|++||....+...+.+.+|...|++++|.| +...+||+++.||.|+|||+..
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~----------- 236 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL----------- 236 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-----------
Confidence 98 8999999999999998666677889999999999999986 4678999999999999999976
Q ss_pred cCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 046871 170 EDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~ 249 (764)
+..+..+.+|..+|+|+.|-.+| +|++|+.|++|++|+...|
T Consensus 237 -------------------------------------~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 237 -------------------------------------GTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred -------------------------------------ceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccch
Confidence 34456689999999999997654 8999999999999999999
Q ss_pred ceeEEeccCCcCeEEEEEc-----------CCC-------------------------CEEEEEeCCCcEEEEeCCC-Ce
Q 046871 250 SKTIKLRGHTDNIRSLLLD-----------STG-------------------------RYCLSGSSDSMIRLWDLGQ-QR 292 (764)
Q Consensus 250 ~~~~~l~~h~~~V~~l~~s-----------pdg-------------------------~~l~sgs~Dg~I~iwdl~~-~~ 292 (764)
++...+++|...|+.|+++ |.+ ..|++|+.|.++.+|+... .+
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 9999999999999999887 223 3599999999999999754 56
Q ss_pred eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 293 CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 293 ~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
++..+.+|..-|+.+.|+||++++++++.|..|++||.++|+.+..+. |-.+|+.++|+.|. +++++.|.++++|++
T Consensus 359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 888999999999999999999999999999999999999999999888 78899999999997 888899999999999
Q ss_pred CCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 370 EGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
.+.+...-+++|.. .+..+.|+|||..+++|+.|..+++|.
T Consensus 439 ~tkKl~~DLpGh~D------------------------------------EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 439 RTKKLKQDLPGHAD------------------------------------EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeeecccCCCCCc------------------------------------eEEEEEecCCCceeecCCCceEEEeec
Confidence 98876655544332 366788999999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-43 Score=345.85 Aligned_cols=280 Identities=25% Similarity=0.401 Sum_probs=262.7
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V~ 108 (764)
.|-..+|..+.| |.|++.|+||+.+|.+++|+..+ ...+.+|.+|.+.|.++.|+|. + .+++|+.||+++
T Consensus 172 ~gd~rPis~~~f-----S~ds~~laT~swsG~~kvW~~~~--~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 172 VGDTRPISGCSF-----SRDSKHLATGSWSGLVKVWSVPQ--CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred ccCCCcceeeEe-----ecCCCeEEEeecCCceeEeecCC--cceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 466788999988 89999999999999999999998 6789999999999999999997 3 799999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+|++ .....+..+.+|...|..++|+ |++++|+|++.|.+-++||++++
T Consensus 245 lw~~-~~e~~l~~l~gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk----------------------------- 293 (459)
T KOG0272|consen 245 LWKL-SQETPLQDLEGHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETK----------------------------- 293 (459)
T ss_pred eecc-CCCcchhhhhcchhhheeeeec-CCCceeeecccccchhhcccccc-----------------------------
Confidence 9997 4568899999999999999999 78999999999999999999984
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
.......+|...|++++|.+||.++++|+.|..-+|||+++|+++..|.+|..+|.++.|+
T Consensus 294 -------------------~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 294 -------------------SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS 354 (459)
T ss_pred -------------------hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence 2334468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeE
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP-TFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPIL 346 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~ 346 (764)
|+|..|+|||.|++++|||++..+++.++.+|.+-|+.+.|+| .|.+|+|++.|++++||...+..++..+. |++.|.
T Consensus 355 PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 355 PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 9999999999999999999999999999999999999999998 78899999999999999999999988776 688999
Q ss_pred EEEeeCCc--eEEEeCCCcEEEee
Q 046871 347 QLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 347 ~l~~spd~--l~~~s~dg~I~iwd 368 (764)
++.+++++ +++++.|.++++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 99999999 99999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-42 Score=337.38 Aligned_cols=280 Identities=24% Similarity=0.431 Sum_probs=248.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC------CeEEEEeCCC
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD------NTLVSCSSDT 105 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d------~~l~s~s~Dg 105 (764)
.||...|.|++| ||||+.||+|+.||+|++||..++ .+....|.+|..+|++++|-|- .+|++++.||
T Consensus 154 KgH~~WVlcvaw-----sPDgk~iASG~~dg~I~lwdpktg-~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 154 KGHKNWVLCVAW-----SPDGKKIASGSKDGSIRLWDPKTG-QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred cCCccEEEEEEE-----CCCcchhhccccCCeEEEecCCCC-CcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 599999999999 899999999999999999999886 4567889999999999999763 3799999999
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+|+|||+ ..+.++..+.+|+.+|+|+.|- ...++++|+.|++|++|+...+..
T Consensus 228 ~vrIWd~-~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~------------------------ 280 (480)
T KOG0271|consen 228 SVRIWDT-KLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKL------------------------ 280 (480)
T ss_pred CEEEEEc-cCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhH------------------------
Confidence 9999997 6689999999999999999996 578999999999999999987432
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc------------------------------------CCC
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN------------------------------------DSG 229 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s------------------------------------p~g 229 (764)
...+++|...|..++.+ ..+
T Consensus 281 ------------------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 281 ------------------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred ------------------------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 23344444444444443 124
Q ss_pred CEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEE
Q 046871 230 NLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALA 308 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~ 308 (764)
..+++|+.|.++.+|+.... +++.++.+|..-|+.+.||||+++++++|.|..|++||.++|+.+.+|++|-+.|+.++
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 56999999999999998654 57888999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 309 STPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
|+.|.++|++|+.|.++++|++++.+...-+. |.+.|.++.|+||| +++|+.|..+++|.
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999888777 78899999999999 77788899999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=333.91 Aligned_cols=280 Identities=22% Similarity=0.363 Sum_probs=256.7
Q ss_pred ccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCC
Q 046871 82 SHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~ 159 (764)
+-+.+|..+.|+.++ .|++||.+|.++||+. .....+.++.+|...|.++.|+|. ++..+|||+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~-~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSV-PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeec-CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 446789999999997 8999999999999997 556889999999999999999976 4779999999999999999863
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
..+..+.+|...|..++|+|+|++|++++.|.
T Consensus 252 ------------------------------------------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~ 283 (459)
T KOG0272|consen 252 ------------------------------------------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDS 283 (459)
T ss_pred ------------------------------------------------cchhhhhcchhhheeeeecCCCceeeeccccc
Confidence 23345789999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 240 VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 240 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
+-++||+++++.+....||...|.+++|.+||..+++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..|+||
T Consensus 284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred chhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccc
Q 046871 320 GRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRAR 395 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~ 395 (764)
|.|++++|||++....+.++. |..-|+.+.|+|.. |++++.|+++++|...+..+++.+.+|.+.
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k----------- 432 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK----------- 432 (459)
T ss_pred CCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc-----------
Confidence 999999999999888877666 67889999999944 999999999999999999888888766443
Q ss_pred cccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 396 VSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
|.++.+++|+.+++|++.|.++++|.
T Consensus 433 -------------------------V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 433 -------------------------VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------------------------eEEEEeccCCceEEEeccCceeeecc
Confidence 56788889999999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-39 Score=305.96 Aligned_cols=299 Identities=21% Similarity=0.353 Sum_probs=258.6
Q ss_pred CccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCC----CeeeeeccccCCceEEEEEecCCCcEEEEEeC
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSD----GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGL 147 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~----~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~ 147 (764)
.....++++|.++|..++..+.+ .+++++.|.++.+|++..+ +...+.+.+|...|..++.+ +++++.++++.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~sw 83 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASW 83 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-cCCceEEeccc
Confidence 34567889999999999998774 8999999999999998654 45678899999999999999 89999999999
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC
Q 046871 148 GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND 227 (764)
Q Consensus 148 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp 227 (764)
|+++++||+.++ ...+.+.+|...|.+++|++
T Consensus 84 D~~lrlWDl~~g------------------------------------------------~~t~~f~GH~~dVlsva~s~ 115 (315)
T KOG0279|consen 84 DGTLRLWDLATG------------------------------------------------ESTRRFVGHTKDVLSVAFST 115 (315)
T ss_pred cceEEEEEecCC------------------------------------------------cEEEEEEecCCceEEEEecC
Confidence 999999999874 33456889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeccC--CcCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH--TDNIRSLLLDST--GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS 303 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~spd--g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~ 303 (764)
|.+++++|+.|.+|.+|++... +..++..+ .+.|.|+.|+|+ ..+|++++.|++|++||+++.+..+++.+|++.
T Consensus 116 dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 116 DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY 194 (315)
T ss_pred CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence 9999999999999999998644 44444333 789999999998 678999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCC
Q 046871 304 VWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 304 V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
++.++++|||..+++|+.||.+.+||+..++.+..+.+...|.+++|+|+. -+++..+.+|+|||++++..+..+....
T Consensus 195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999 5555667779999999988776654211
Q ss_pred cceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 383 SFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
... ....+......++|++||..|+.|.+|+.|++|.+..
T Consensus 275 ~g~---------------------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 275 IGP---------------------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred ccc---------------------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 100 1112233467889999999999999999999999863
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-38 Score=299.55 Aligned_cols=279 Identities=22% Similarity=0.366 Sum_probs=252.4
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
||.+.|.++.| ++|+++|++++.||.+.|||.-+ ...+..+.-...||..++|+|.+ .++.|+-|....||+
T Consensus 53 GH~~Ki~~~~w-----s~Dsr~ivSaSqDGklIvWDs~T--tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 53 GHLNKIYAMDW-----STDSRRIVSASQDGKLIVWDSFT--TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred ccccceeeeEe-----cCCcCeEEeeccCCeEEEEEccc--ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 99999999999 89999999999999999999988 44566777779999999999997 788899999999999
Q ss_pred CCCC--C---eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 112 CSSD--G---TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 112 ~~~~--~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+... . ...+.+.+|.+++.|+.|. + ...|++++.|.+..+||++++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~-d-D~~ilT~SGD~TCalWDie~g--------------------------- 176 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFL-D-DNHILTGSGDMTCALWDIETG--------------------------- 176 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEc-C-CCceEecCCCceEEEEEcccc---------------------------
Confidence 8532 1 4456789999999999998 4 678889999999999999984
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
.....+.+|.+.|.++.++| +++.+++|+-|+..++||++.+.+++.|.+|...|+++
T Consensus 177 ---------------------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 177 ---------------------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV 235 (343)
T ss_pred ---------------------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence 34456889999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee--cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cC
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH--TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GE 342 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h--~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~ 342 (764)
+|.|+|.-+++|+.|+++|+||++..+.+..+... ..+|++++|+-.|++|++|..|.++.+||.-.++.+..+. |+
T Consensus 236 ~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE 315 (343)
T ss_pred EEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC
Confidence 99999999999999999999999999988888732 3579999999999999999999999999998888776554 78
Q ss_pred CCeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 343 HPILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 343 ~~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
..|+|+..+||| +++|+.|..++||.
T Consensus 316 NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999 88899999999994
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-38 Score=333.53 Aligned_cols=379 Identities=23% Similarity=0.379 Sum_probs=299.1
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC---eEEEEeCCCcEEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN---TLVSCSSDTTLKT 109 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~---~l~s~s~Dg~V~v 109 (764)
.|.++|--++| +|.+..|++||.||.|++||+.. +.+...|++|.+.|.++.|.|+- .|+++..|+++++
T Consensus 103 ~He~Pvi~ma~-----~~~g~LlAtggaD~~v~VWdi~~--~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 103 IHEAPVITMAF-----DPTGTLLATGGADGRVKVWDIKN--GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred ccCCCeEEEEE-----cCCCceEEeccccceEEEEEeeC--CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence 39999999999 68899999999999999999998 78899999999999999999983 6899999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCC--CCcC-----C-------cCc
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGD--AMED-----D-------CST 175 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~--~~~~-----~-------~~~ 175 (764)
||+.....|+.++..|...|++++|. +++..+++++.|..|.+||+.+.+....... ..+. . ...
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 99976666889999999999999999 7899999999999999999965332211000 0000 0 000
Q ss_pred cccCCC-------------------CCCccc-------------------------------------------------
Q 046871 176 GINGSG-------------------NSLPVT------------------------------------------------- 187 (764)
Q Consensus 176 ~~~~~~-------------------~~~~~~------------------------------------------------- 187 (764)
.....+ ....+.
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 000000 000000
Q ss_pred ---ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeccCCc
Q 046871 188 ---SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG----SKTIKLRGHTD 260 (764)
Q Consensus 188 ---~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~ 260 (764)
.+.....+..+++++. .+.....+.+|...|.++....+|.+|++|+.|..+++|.++++ -++....+|++
T Consensus 335 e~~~laVATNs~~lr~y~~--~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTL--PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred ccceEEEEeCCCceEEEec--CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 0111122222333311 12223357899999999997777889999999999999977443 34556789999
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe---------eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 261 NIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQR---------CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 261 ~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~---------~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
.|.+++++..+ .+|+++|.|+++++|++...+ +..+...|...|++++.+|+.++|+|||.|.+.++|++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 99999997755 579999999999999996521 11234579999999999999999999999999999999
Q ss_pred CCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccC
Q 046871 331 ATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 331 ~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
.....+.++. |...|.++.|++.. +++++.|.+|+||.+.+..+.+++.+|..
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~------------------------ 548 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS------------------------ 548 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc------------------------
Confidence 9888877776 67899999999987 99999999999999999999988886643
Q ss_pred CCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecC
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~ 457 (764)
+|.++.|..+|++|++++.||.|++|++.+++|++++.
T Consensus 549 ------------aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 549 ------------AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred ------------eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 35677888899999999999999999999999998883
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=294.05 Aligned_cols=284 Identities=25% Similarity=0.404 Sum_probs=245.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC---CccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV---GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
.||.+.|+.++..+ .+.+.|+++++|.+|.+|++.... +..++.|.+|...|.++..++|+ +.++++.|+++
T Consensus 12 ~gh~d~Vt~la~~~----~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKI----KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeec----CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 49999999999953 246799999999999999997654 45589999999999999999997 88999999999
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
++||+ ..++..+.|.+|...|.+++|+ +|...+++|+.|++|++|++....
T Consensus 88 rlWDl-~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~c--------------------------- 138 (315)
T KOG0279|consen 88 RLWDL-ATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVC--------------------------- 138 (315)
T ss_pred EEEEe-cCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeeecccE---------------------------
Confidence 99998 4568899999999999999999 889999999999999999987531
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
.....-..+.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|++.++.+
T Consensus 139 --------------------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 139 --------------------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred --------------------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 111112233788999999997 6799999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec----
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG---- 341 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---- 341 (764)
++||||..+++|+.||.+.+||++.+++++++. |...|.+++|+|+.-.|+ +..+-.|+|||+.++..+..+..
T Consensus 199 ~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g 276 (315)
T KOG0279|consen 199 TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLC-AATATSIKIWDLESKAVVEELKLDGIG 276 (315)
T ss_pred EECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEe-eccCCceEEEeccchhhhhhccccccc
Confidence 999999999999999999999999999998886 788999999999965554 44566699999999887765542
Q ss_pred ------CCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 342 ------EHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 342 ------~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
.....+++|++|| |+.|-.|+.|++|.+.
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1235678999999 9999999999999864
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=291.74 Aligned_cols=290 Identities=21% Similarity=0.348 Sum_probs=257.0
Q ss_pred cceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 76 CSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
..+++++|...|.++.|++|. +++++|.||.+.|||. -+....+.+......|..++|+ |.++++|.|+.|+...||
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs-~TtnK~haipl~s~WVMtCA~s-PSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDS-FTTNKVHAIPLPSSWVMTCAYS-PSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEc-ccccceeEEecCceeEEEEEEC-CCCCeEEecCcCceeEEE
Confidence 358899999999999999997 8999999999999996 4566677777788899999999 789999999999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
++.+..... .......+.+|.+-+.|+.|.+| ..|++
T Consensus 125 ~ls~~d~~g------------------------------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT 161 (343)
T KOG0286|consen 125 PLSTRDAEG------------------------------------------NVRVSRELAGHTGYLSCCRFLDD-NHILT 161 (343)
T ss_pred ecccccccc------------------------------------------cceeeeeecCccceeEEEEEcCC-CceEe
Confidence 998531110 01223457899999999999885 56999
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCC
Q 046871 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF 313 (764)
Q Consensus 235 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~ 313 (764)
++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++.+.++++|.+|...|+++.|.|+|
T Consensus 162 ~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEeec---CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceecc
Q 046871 314 SHVYSGGRDLSLYLTDLATRESLLLCTG---EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGN 388 (764)
Q Consensus 314 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 388 (764)
.-|++|+.|++.++||++..+.+..+.+ ..+|++++|+..| |++|..|.++.+||.-.++....+.+|.
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe------ 315 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE------ 315 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC------
Confidence 9999999999999999999999988886 4589999999999 7777889999999998877666665443
Q ss_pred ccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 389 LSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 389 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
..|.++.++|||.-|+||+.|.+++||.
T Consensus 316 ------------------------------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 ------------------------------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------------------------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 3467888899999999999999999994
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=320.48 Aligned_cols=375 Identities=20% Similarity=0.306 Sum_probs=320.1
Q ss_pred eCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCC
Q 046871 27 NNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT 105 (764)
Q Consensus 27 ~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg 105 (764)
....+.||-..|.+|.| |.|.++|++|++|.++++|+++.........+.+|.+.|-.+.|..++ .+++.+.||
T Consensus 137 l~r~~~g~fddi~si~W-----s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG 211 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDW-----SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDG 211 (893)
T ss_pred EeeeecCCccceeEEEe-----ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCc
Confidence 34556799999999999 899999999999999999999875555577889999999999998886 899999999
Q ss_pred cEEEecCCCC----------------------Cee-----------eeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 106 TLKTWNCSSD----------------------GTC-----------IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 106 ~V~vWd~~~~----------------------~~~-----------~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.+.+|.+... ++. ..-+......|+|.+|+ +..++|++|-..|...
T Consensus 212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFG 290 (893)
T ss_pred eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeE
Confidence 9999987500 110 01122233679999999 7899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+|++... ..+..+.-...+|..++|+..|++|
T Consensus 291 LyelP~f------------------------------------------------~lih~LSis~~~I~t~~~N~tGDWi 322 (893)
T KOG0291|consen 291 LYELPDF------------------------------------------------NLIHSLSISDQKILTVSFNSTGDWI 322 (893)
T ss_pred EEecCCc------------------------------------------------eEEEEeecccceeeEEEecccCCEE
Confidence 9999762 2223344456789999999999999
Q ss_pred EEEeCC-CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 233 VSGGTE-KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 233 ~sgs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
+.|+.. |.+.||+.++..-+.+.++|...+++++++|||+++++|+.||.|+|||..++-|+.+|..|+..|+.+.|+.
T Consensus 323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe
Confidence 998765 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCe--EEEEeeCCc-eEEEe-CCC-cEEEeeCCCCCCceeeecCCccee
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI--LQLALHDDN-IWVAT-TDS-SVHRWPAEGRNPQKVFQRGGSFIA 386 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V--~~l~~spd~-l~~~s-~dg-~I~iwd~~~~~~~~~~~~~~~~~~ 386 (764)
.++.+++++-||+|+.||+...+..+++..+.++ .|++..|.| +++++ .|. .|.+|++.+|+.+..+.+|.+.+.
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs 482 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS 482 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce
Confidence 9999999999999999999999999988876665 677888888 55544 443 799999999999999998887654
Q ss_pred cccccccccc-----ccCCCCCcccCCCC--CCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 387 GNLSFSRARV-----SLEGSTPVSSRFKE--PNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 387 ~~~~~s~~~~-----~~~~~~~~~~~~~~--~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.++|++... +.+..+++|+.+.. ...+++-.+.+..++|.|||+.|+++.-||.|.+||+..+..+.++
T Consensus 483 -~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 483 -GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred -eeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 778888543 45667888887765 6678888889999999999999999999999999999988887665
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-35 Score=300.59 Aligned_cols=363 Identities=17% Similarity=0.219 Sum_probs=288.8
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC----C
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD----T 105 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D----g 105 (764)
..+|...++-..+ ||.|-|+|+|...|.|||||....+..+..+++.-.++|.++.|+.|+ ++++.+.. |
T Consensus 55 YtEH~~~vtVAky-----SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKY-----SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eccccceeEEEEe-----CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 4689888988888 899999999999999999999876566677788889999999999997 66666553 4
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
.+.+|| .+..+-.+.+|...|++++|-|...-.+++|+.|+.|.+|+-..
T Consensus 130 ~~F~~D---SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--------------------------- 179 (603)
T KOG0318|consen 130 HVFLWD---SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--------------------------- 179 (603)
T ss_pred EEEEec---CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---------------------------
Confidence 578888 36778889999999999999988888999999999999997542
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec---cCCcCe
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR---GHTDNI 262 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~V 262 (764)
-+.......|..-|+|+.|+|||.++++.+.||.|.+||-.+|+.+..+. +|.+.|
T Consensus 180 ---------------------FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 180 ---------------------FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred ---------------------eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 11223466788899999999999999999999999999999999999998 899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE-------------------------------------------ee
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY-------------------------------------------AV 299 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l-------------------------------------------~~ 299 (764)
.+++|+||++.++++|.|.+++|||+.+.++++++ .+
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence 99999999999999999999999999776554433 46
Q ss_pred ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE-------------------------------e---------
Q 046871 300 HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL-------------------------------C--------- 339 (764)
Q Consensus 300 h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~-------------------------------~--------- 339 (764)
|...|+++..+|++++|++|+.||.|.-|+..++..-.. +
T Consensus 319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence 899999999999999999999999999999865432110 0
Q ss_pred ---------------------------------e---------cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCc
Q 046871 340 ---------------------------------T---------GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 340 ---------------------------------~---------~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~ 375 (764)
+ ......+++++|++ +++|+.|+.|++|.+......
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 0 00014677888888 888999999999999876543
Q ss_pred ee-eecCCcceeccccccccccccC-----CCCCcccCCC---CCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 376 KV-FQRGGSFIAGNLSFSRARVSLE-----GSTPVSSRFK---EPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 376 ~~-~~~~~~~~~~~~~~s~~~~~~~-----~~~~~~~~~~---~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
.. ....+......++|||+...+. +...++++.. ....-.-+...|.+++|+||..+||||+-|-+|.+|+
T Consensus 479 ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 32 2233444556888998765432 2222222222 1112223556799999999999999999999999999
Q ss_pred ccc
Q 046871 447 ITR 449 (764)
Q Consensus 447 i~t 449 (764)
+.+
T Consensus 559 v~k 561 (603)
T KOG0318|consen 559 VKK 561 (603)
T ss_pred ccC
Confidence 875
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-37 Score=297.70 Aligned_cols=281 Identities=23% Similarity=0.386 Sum_probs=261.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||+.+|+.+-| .|+-..+++++.|++|++||..+ +++...+++|.+.|.++.|...| .+++++.|-.+++|
T Consensus 105 ~g~r~~vt~v~~-----hp~~~~v~~as~d~tikv~D~~t--g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 105 AGHRSSVTRVIF-----HPSEALVVSASEDATIKVFDTET--GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred hccccceeeeee-----ccCceEEEEecCCceEEEEEccc--hhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 489999999999 68888999999999999999999 67799999999999999999887 89999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
|.....++++.+.+|...|.+++|. |.++++++++.|.+|+.|++.+
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~t-------------------------------- 224 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECDT-------------------------------- 224 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEeccc--------------------------------
Confidence 9866577889999999999999999 6689999999999999999998
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
+..+.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...++.|..+|.+++|.|.
T Consensus 225 ----------------g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 225 ----------------GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPE 288 (406)
T ss_pred ----------------ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccc
Confidence 4556678899999999999999999999999999999999999999999999999999999763
Q ss_pred ---------------CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE
Q 046871 271 ---------------GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 271 ---------------g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
+.++.+++.|++|++||+.++.|+.++.+|...|..++|+|.|+||+++..|+++++||++++++
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 25899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 336 LLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 336 ~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
...+. +++-++++.|+.+. +++|+-|.++++|.
T Consensus 369 mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 369 MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 88776 67789999999888 88899999999995
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=310.29 Aligned_cols=364 Identities=17% Similarity=0.262 Sum_probs=301.4
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC-CCcEEEec
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS-DTTLKTWN 111 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~-Dg~V~vWd 111 (764)
....|+|.+| ++..+.|++|-..|...++++.. ..+++.+.-....|..++|+..| .++.++. -|.+.||+
T Consensus 264 ~~~kvtaa~f-----H~~t~~lvvgFssG~f~LyelP~--f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 264 NSSKVTAAAF-----HKGTNLLVVGFSSGEFGLYELPD--FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred cccceeeeec-----cCCceEEEEEecCCeeEEEecCC--ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 3478999999 67889999999999999999998 78888888888899999999776 6776665 48999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+. ....+...++|...+.+++++ +|++++|+|+.||.|++||...
T Consensus 337 Wq-sEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~S--------------------------------- 381 (893)
T KOG0291|consen 337 WQ-SESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQS--------------------------------- 381 (893)
T ss_pred ee-ccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccC---------------------------------
Confidence 84 456666778999999999999 8999999999999999999987
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-cCeEEEEEcCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDST 270 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spd 270 (764)
+.+..++..|...|+.+.|+..|+.+++.+-||+|+.||+...+..+++.... -...|++..|.
T Consensus 382 ---------------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 382 ---------------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred ---------------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 34556788999999999999999999999999999999999999888887532 35678888999
Q ss_pred CCEEEEEeCCC-cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-eEEEEeecCCCeEEE
Q 046871 271 GRYCLSGSSDS-MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-ESLLLCTGEHPILQL 348 (764)
Q Consensus 271 g~~l~sgs~Dg-~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~V~~l 348 (764)
|..+.+|+.|. .|.+|++++|+.+-.+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ..+..+...+.++.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~v 526 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAV 526 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEE
Confidence 99999999887 4999999999999999999999999999999999999999999999998644 466677888899999
Q ss_pred EeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEE
Q 046871 349 ALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEI 426 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~ 426 (764)
+|+|+| +++++-||.|.+||++.+.....+.+-.... +.+...+- -....-.....++.+++
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~-------~gR~~~D~---------~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS-------GGRKETDR---------ITAENSAKGKTFTTICY 590 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcc-------ccccccce---------eehhhcccCCceEEEEE
Confidence 999999 9999999999999999877665554322111 00000000 00000112345889999
Q ss_pred ecCCcEEEEeeCCCcEEEEEccccEEeeecC---CCchhhhhhhhhc
Q 046871 427 LNNRRHVLTKDAAGSVKLWEITRGVVVEDYG---KASFEEKKEELFE 470 (764)
Q Consensus 427 s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~---~~~f~~~~~~~~~ 470 (764)
++||..+++|++...|++||+.++.+++.|. ..+.+...+.++.
T Consensus 591 SaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~ 637 (893)
T KOG0291|consen 591 SADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNR 637 (893)
T ss_pred cCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcc
Confidence 9999999999999999999999999999984 3345555554443
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-35 Score=298.62 Aligned_cols=369 Identities=18% Similarity=0.262 Sum_probs=289.8
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
....||...|++++|-|+ .--+++||+.|++|.+|+=.. .+...++..|..-|+|+.|+||| ++++++.||+|
T Consensus 141 Gei~GhSr~ins~~~Kps----RPfRi~T~sdDn~v~ffeGPP--FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPS----RPFRIATGSDDNTVAFFEGPP--FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred ceeeccceeEeeeeccCC----CceEEEeccCCCeEEEeeCCC--eeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 345899999999999542 234899999999999998765 77788899999999999999998 99999999999
Q ss_pred EEecCCCCCeeeeecc---ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCc--CCcCccccCCCC
Q 046871 108 KTWNCSSDGTCIRTLR---QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME--DDCSTGINGSGN 182 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~---~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~ 182 (764)
.+|| ..+++.+..+. +|.+.|.+++|+ ||+..+++++.|.++++||+.+............ +... +.
T Consensus 215 ~iyD-Gktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv------G~ 286 (603)
T KOG0318|consen 215 YIYD-GKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV------GC 286 (603)
T ss_pred EEEc-CCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE------EE
Confidence 9999 46788888877 899999999999 8999999999999999999998755433221111 1000 11
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----------
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT---------- 252 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~---------- 252 (764)
......+..++.++.+......... .+..+.+|...|++++.++++++|++|+.||.|.-||..++..-
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccce
Confidence 1123345566667777776665544 77889999999999999999999999999999999997654211
Q ss_pred -EEec--------------------------------------------------------------cC--------CcC
Q 046871 253 -IKLR--------------------------------------------------------------GH--------TDN 261 (764)
Q Consensus 253 -~~l~--------------------------------------------------------------~h--------~~~ 261 (764)
..+. .+ .-.
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~ 445 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE 445 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence 0000 00 013
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE--
Q 046871 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC--IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL-- 337 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~--~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~-- 337 (764)
..+++++|+++.++.|+.|+.|+||.+..... ...+..|.++|++++++||+.+|++|...+.+.+||..+.+...
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~ 525 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR 525 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce
Confidence 45678899999999999999999999976543 33456799999999999999999999999999999999887632
Q ss_pred EeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccc
Q 046871 338 LCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTI 415 (764)
Q Consensus 338 ~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i 415 (764)
...|...|.|++|+|+. +++|+-|..|.||+++.....-.++..|
T Consensus 526 w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH--------------------------------- 572 (603)
T KOG0318|consen 526 WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH--------------------------------- 572 (603)
T ss_pred eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc---------------------------------
Confidence 23378899999999999 8999999999999998654332222211
Q ss_pred cCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 416 PGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 416 ~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
..++..+.|. |...|++.+.|-+|++|++.
T Consensus 573 --~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 --LGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred --ccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 2236677777 44789999999999999975
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-35 Score=296.36 Aligned_cols=322 Identities=21% Similarity=0.317 Sum_probs=277.3
Q ss_pred CCCCCeeEEEeecccccCCCc-EEEEEeCCCcEEEEeCCCCCCccc--eeec------c----cccceeEEEEeCCC-eE
Q 046871 33 KHCAGINCLAVLKSSVSNGVD-YLFTGSRDGTLKRWSLADDVGSCS--ATFE------S----HVDWVNDAVLVGDN-TL 98 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~-~L~sgs~Dg~I~iWd~~~~~~~~~--~~l~------~----h~~~V~~v~~s~d~-~l 98 (764)
+|...|.+.+|. |-.. .|++|+.|.+.++|++......+. ..|+ + ....|++++|+.+| .|
T Consensus 176 ~~~~~V~~~~Wn-----P~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 176 RHESEVFICAWN-----PLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred cCCCceEEEecC-----chhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 599999999994 5445 899999999999999874212111 1111 1 23579999999998 89
Q ss_pred EEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 99 VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
++|+.||.+++|+. ++..+.++..|.++|.++.|+ ..+++|++++.|+++.+||..++..
T Consensus 251 atG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~----------------- 310 (524)
T KOG0273|consen 251 ATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTV----------------- 310 (524)
T ss_pred EEeecCcEEEEEec--CchhhhhhhccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceE-----------------
Confidence 99999999999994 688999999999999999999 8899999999999999999976422
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccC
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH 258 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 258 (764)
...+.-|..+-..+.|-. ...+++.+.|+.|+++-+....++.++.+|
T Consensus 311 -------------------------------~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 311 -------------------------------KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred -------------------------------EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecc
Confidence 223444555545677754 456999999999999999999999999999
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCC---------CEEEEecCCCcEEEEe
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF---------SHVYSGGRDLSLYLTD 329 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~---------~~l~sgs~Dg~I~iwd 329 (764)
.+.|.+|.|+|.|.+|+++|.|++++||+.....+...+..|...|..+.|+|.+ ..+++++.|++|++||
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999965 4689999999999999
Q ss_pred CCCCeEEEEe-ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCccc
Q 046871 330 LATRESLLLC-TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSS 406 (764)
Q Consensus 330 ~~~~~~~~~~-~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 406 (764)
+..+.++..+ .|..+|.+++|+|++ +++|+.||.|.+|++.+++..+.+.+
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-------------------------- 492 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-------------------------- 492 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--------------------------
Confidence 9999999988 689999999999999 99999999999999999887766543
Q ss_pred CCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 407 RFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 407 ~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
..+|..++|+.+|..|..+-.||.+++-|+.
T Consensus 493 -----------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 -----------TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -----------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 3346788899999999999999999999875
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=288.72 Aligned_cols=295 Identities=25% Similarity=0.373 Sum_probs=261.5
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
+..+.+.+|.+||.|+++.|.+ .|++++.|++|+|||+ .+++...++.+|...|..++++ +...++++++.|+.|+.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS-~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVS-KRHPYLFSAGEDKQVKC 219 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeec-ccCceEEEecCCCeeEE
Confidence 4567788999999999999986 8999999999999998 5689999999999999999999 77899999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
||++.. +.+....+|-+.|+|++.+|.-+.|+
T Consensus 220 wDLe~n------------------------------------------------kvIR~YhGHlS~V~~L~lhPTldvl~ 251 (460)
T KOG0285|consen 220 WDLEYN------------------------------------------------KVIRHYHGHLSGVYCLDLHPTLDVLV 251 (460)
T ss_pred Eechhh------------------------------------------------hhHHHhccccceeEEEeccccceeEE
Confidence 999863 34455789999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCC
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF 313 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~ 313 (764)
+|+.|..+|+||+++...+..+.||..+|.++.+.|-...+++||.|++|++||++.++.+.++..|...|.+++.+|..
T Consensus 252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccc
Q 046871 314 SHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSF 391 (764)
Q Consensus 314 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
..|++++.| .|+.|++..|..+..+. +..-|++++...|+ +++|+..|.|..||.+++-.-+..+.
T Consensus 332 ~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t----------- 399 (460)
T KOG0285|consen 332 NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQT----------- 399 (460)
T ss_pred hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccc-----------
Confidence 999999877 69999999998877655 56778999999999 88888899999999998754433221
Q ss_pred cccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 392 SRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 392 s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
......+.+..+|.+.+|...|.+|+||..|.+|++|.=.
T Consensus 400 -----------------~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 400 -----------------IVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred -----------------cccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0011234557789999999999999999999999999643
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-35 Score=295.91 Aligned_cols=277 Identities=22% Similarity=0.291 Sum_probs=255.2
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~ 113 (764)
+..|+||+| +.+|..||+|+.||.++||+.. +..+.+|..|.++|.++.|+..| +|++++.|+++.+||.
T Consensus 235 nkdVT~L~W-----n~~G~~LatG~~~G~~riw~~~---G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~- 305 (524)
T KOG0273|consen 235 NKDVTSLDW-----NNDGTLLATGSEDGEARIWNKD---GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA- 305 (524)
T ss_pred cCCcceEEe-----cCCCCeEEEeecCcEEEEEecC---chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec-
Confidence 468999999 7899999999999999999988 56789999999999999999987 9999999999999996
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
..+...+.+..|..+-..+.|- +..-|++++.|+.|+++.+...
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~---------------------------------- 349 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED---------------------------------- 349 (524)
T ss_pred cCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCC----------------------------------
Confidence 6688888999999887888997 5678999999999999999753
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC--
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG-- 271 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-- 271 (764)
.....+.+|.++|.++.|+|.|.+|++++.|++++||+.........+.+|...|..+.|+|+|
T Consensus 350 --------------~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 350 --------------RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred --------------CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence 2334577899999999999999999999999999999999999999999999999999999965
Q ss_pred -------CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCC
Q 046871 272 -------RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHP 344 (764)
Q Consensus 272 -------~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 344 (764)
..+++++.|++|++||+..+.++++|..|+.+|++++|+|+++++++|+.||.|.+|++++++.++.+...+.
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 345 ILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 345 V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
|..++|+.+| +.++..|+.+.+.|+.
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999998 7777789999998864
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=272.25 Aligned_cols=282 Identities=18% Similarity=0.284 Sum_probs=244.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe-eeeeccccCCceE
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT-CIRTLRQHSDYVT 130 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~-~~~~l~~h~~~V~ 130 (764)
.-+|+|+|.|-+||+|.+.+ +.|..+++...+.|+.+...|++..+++.....|++||+.+... ++.++.+|...|.
T Consensus 10 ~viLvsA~YDhTIRfWqa~t--G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT--GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhc--CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE
Confidence 35899999999999999999 89999999889999999999998554455557899999976544 7889999999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccc
Q 046871 131 CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVP 210 (764)
Q Consensus 131 ~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 210 (764)
++.|. .+++++++|+.||+++|||++....
T Consensus 88 aVgF~-~dgrWMyTgseDgt~kIWdlR~~~~------------------------------------------------- 117 (311)
T KOG0315|consen 88 AVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSC------------------------------------------------- 117 (311)
T ss_pred EEEEe-ecCeEEEecCCCceEEEEeccCccc-------------------------------------------------
Confidence 99999 8999999999999999999986311
Q ss_pred eeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccC-CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH-TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
.....|..+|+++..+|+...|++|..+|.|++||+....+...+... ...|+++.+.|||++++.+...|++++|++-
T Consensus 118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 124456799999999999999999999999999999988777666533 3589999999999999999999999999985
Q ss_pred CC------eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-eEEEE-eecCCCeEEEEeeCCc--eEEEe
Q 046871 290 QQ------RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-ESLLL-CTGEHPILQLALHDDN--IWVAT 359 (764)
Q Consensus 290 ~~------~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-~~~~~-~~~~~~V~~l~~spd~--l~~~s 359 (764)
.. +++..++.|++-+..+.+|||+++|+++|.|.+++||+.++. +.... -.|+..+..++||.|+ |++|+
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC
Confidence 43 467778999999999999999999999999999999999987 22222 3356789999999999 99999
Q ss_pred CCCcEEEeeCCCCCCceeeecCCcce
Q 046871 360 TDSSVHRWPAEGRNPQKVFQRGGSFI 385 (764)
Q Consensus 360 ~dg~I~iwd~~~~~~~~~~~~~~~~~ 385 (764)
.|+.+++|++..++.++.+++|+...
T Consensus 278 sd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 278 SDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCCceeecccccCceeeecCCccccc
Confidence 99999999999999988888776554
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=288.82 Aligned_cols=281 Identities=23% Similarity=0.417 Sum_probs=256.4
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||.+.|.|+++ .|.+.+++||+.|++|+|||+.+ +++..++.+|...|..+++++-. ++++++.|+.|+.|
T Consensus 148 ~gHlgWVr~vav-----dP~n~wf~tgs~DrtikIwDlat--g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 148 SGHLGWVRSVAV-----DPGNEWFATGSADRTIKIWDLAT--GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhccceEEEEee-----CCCceeEEecCCCceeEEEEccc--CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 499999999999 58899999999999999999999 78899999999999999999875 99999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
|+ ...+.++.+.+|-..|.|++.+ |.-+.|++|+.|.++++||+++.
T Consensus 221 DL-e~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr------------------------------- 267 (460)
T KOG0285|consen 221 DL-EYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTR------------------------------- 267 (460)
T ss_pred ec-hhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeeccc-------------------------------
Confidence 98 5578899999999999999999 67899999999999999999973
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
..+..+.+|...|..+.+.|-...+++|+.|++|++||++.|+....+..|...|++++.+|.
T Consensus 268 -----------------~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 268 -----------------ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred -----------------ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 344668999999999999997778999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee---------c
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT---------G 341 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~---------~ 341 (764)
...+++++.|. |+-|++..+..++.+.+|+.-|++++...|+ ++++|+..|.+.+||.++|...+..+ .
T Consensus 331 e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s 408 (460)
T KOG0285|consen 331 ENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES 408 (460)
T ss_pred hhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence 99999998775 8999999999999999999999999998774 78899999999999999887655432 3
Q ss_pred CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 342 EHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 342 ~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
+..|++.+|...+ |++|..|.+|++|.-+.
T Consensus 409 EagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 409 EAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 5679999999888 99999999999997654
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=282.14 Aligned_cols=325 Identities=17% Similarity=0.290 Sum_probs=282.9
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
|.+|++.|.++++ +|+.++++|||.|-.-.+|++.+ +.....+.+|.+.|+++.|+.++ +|++|..+|.|+|
T Consensus 60 F~~H~~svFavsl-----~P~~~l~aTGGgDD~AflW~~~~--ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 60 FDKHTDSVFAVSL-----HPNNNLVATGGGDDLAFLWDIST--GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred hhhcCCceEEEEe-----CCCCceEEecCCCceEEEEEccC--CcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 4689999999999 68899999999999999999999 55788999999999999999998 8999999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
|.. .++.....+...-+.+.=+.|+ +...+|+.|+.||.+.+|.+...
T Consensus 133 ~~~-stg~~~~~~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~------------------------------ 180 (399)
T KOG0296|consen 133 FKV-STGGEQWKLDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQ------------------------------ 180 (399)
T ss_pred EEc-ccCceEEEeecccCceEEEEec-ccccEEEeecCCCcEEEEECCCc------------------------------
Confidence 997 4565555665556677788999 68999999999999999999863
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccC-CcCeEEEEEc
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH-TDNIRSLLLD 268 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s 268 (764)
.....+.+|..++++=.|.|+|+.+++|..||+|++||+.+++++.++.+- .....++.++
T Consensus 181 ------------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 181 ------------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN 242 (399)
T ss_pred ------------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence 223457899999999999999999999999999999999999999888632 3456788999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEe--------eecCceEEEE---EcCCCCEEEEecCCCcEEEEeCCCCeEEE
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYA--------VHTDSVWALA---STPTFSHVYSGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~--------~h~~~V~~l~---~spd~~~l~sgs~Dg~I~iwd~~~~~~~~ 337 (764)
.++..++.|+.++.+++-+..+++.+.... .+...+.++. ++..-.+.|+|+-||+|.|||+.......
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~ 322 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH 322 (399)
T ss_pred cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe
Confidence 999999999999999999999998887776 3444444554 45566788999999999999999999999
Q ss_pred EeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCcccc
Q 046871 338 LCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIP 416 (764)
Q Consensus 338 ~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~ 416 (764)
.+.|+.+|..+.|-++. |++++.+|.|+.||.+++++...+.+|.
T Consensus 323 ~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~---------------------------------- 368 (399)
T KOG0296|consen 323 ICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQ---------------------------------- 368 (399)
T ss_pred eccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCc----------------------------------
Confidence 99999999999999954 9999999999999999999888877653
Q ss_pred CCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 417 GIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 417 g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
.+|...+++|++++++|+|.|++.+|+++.
T Consensus 369 --~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 --MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 346788899999999999999999999874
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=298.54 Aligned_cols=279 Identities=22% Similarity=0.350 Sum_probs=248.3
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~ 112 (764)
-+.+|+.+.| .|+|+.|++|+..|.+.+|+... ......++.|.+.|.++.|++++ .++||+.+|.|++|+.
T Consensus 95 vkc~V~~v~W-----tPeGRRLltgs~SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRW-----TPEGRRLLTGSQSGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred cccceeeEEE-----cCCCceeEeecccccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 4557999999 79999999999999999999866 55566678999999999999997 8999999999999996
Q ss_pred CCCCeeeeeccccC-CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 113 SSDGTCIRTLRQHS-DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 113 ~~~~~~~~~l~~h~-~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
....++.++.|. ..|++++|+ ++...|++++.||+|+|||.....
T Consensus 168 --nmnnVk~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~k------------------------------- 213 (464)
T KOG0284|consen 168 --NMNNVKIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPK------------------------------- 213 (464)
T ss_pred --chhhhHHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEeccCCc-------------------------------
Confidence 345566666555 899999999 578889999999999999987632
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
....+.+|.-.|.++.|+|...+|++|+.|..|++||.+++.++.++.+|...|..+.|++++
T Consensus 214 -----------------ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 214 -----------------EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred -----------------hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC
Confidence 223468999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCeEEEEee--cCCCeEEE
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP-TFSHVYSGGRDLSLYLTDLATRESLLLCT--GEHPILQL 348 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~~l 348 (764)
++|+++|.|..++++|+++.+.++++++|...|++++|+| ...+|.+|+.||.|..|.+...+++..+. |...|+++
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl 356 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL 356 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeee
Confidence 9999999999999999999999999999999999999999 45677899999999999998666665554 67889999
Q ss_pred EeeCCc--eEEEeCCCcEEEeeCC
Q 046871 349 ALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
+|+|-| |++|+.|.++++|.-.
T Consensus 357 ~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 357 AYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccceeEeecCCCcceeeeccC
Confidence 999999 8888999999999653
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=269.51 Aligned_cols=278 Identities=21% Similarity=0.377 Sum_probs=236.8
Q ss_pred eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
+|++++.|.+|++|.. .+|.|.++++.....|+.+... +++..||+++.- .|++||+++..
T Consensus 12 iLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiT-pdk~~LAaa~~q-hvRlyD~~S~n---------------- 72 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEIT-PDKKDLAAAGNQ-HVRLYDLNSNN---------------- 72 (311)
T ss_pred EEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEc-CCcchhhhccCC-eeEEEEccCCC----------------
Confidence 7999999999999996 6799999999888999999999 788899888765 59999999742
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR 256 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~ 256 (764)
...+..+.+|...|+++.|..+|+++++|++||+++|||++...+.+.++
T Consensus 73 ------------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~ 122 (311)
T KOG0315|consen 73 ------------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ 122 (311)
T ss_pred ------------------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc
Confidence 12345678899999999999999999999999999999999977666666
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-
Q 046871 257 GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE- 334 (764)
Q Consensus 257 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~- 334 (764)
|..+|+++..+|+...|++|..+|.|++||+....|...+... ..+|.++...|||.+++.+...|..++|++-+..
T Consensus 123 -~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 123 -HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred -CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc
Confidence 7899999999999999999999999999999988877776533 3579999999999999999999999999987643
Q ss_pred -----EEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC-CCceeeecCCcceeccccccccccccCCCCCcc
Q 046871 335 -----SLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGR-NPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVS 405 (764)
Q Consensus 335 -----~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 405 (764)
++..++ |..-+..+.+|||+ |++++.|.+++||+.++. +....+.++
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh------------------------ 257 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH------------------------ 257 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC------------------------
Confidence 222233 57789999999999 999999999999999876 322233222
Q ss_pred cCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCc
Q 046871 406 SRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKAS 460 (764)
Q Consensus 406 ~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~ 460 (764)
+.-+-.++||.||+||+|++.|+.+++||+..|+.++.|+.++
T Consensus 258 ------------~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 258 ------------QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred ------------CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 2236688999999999999999999999999999999886543
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.8e-36 Score=293.03 Aligned_cols=278 Identities=23% Similarity=0.403 Sum_probs=247.1
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNC 112 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~ 112 (764)
....+|.|+++ |...+++|.+|.+|+|||.++ ..+...+.+|++.|.|+.|... .+++||+|.+|+|||+
T Consensus 195 e~skgVYClQY-------DD~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 195 ENSKGVYCLQY-------DDEKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDV 264 (499)
T ss_pred ccCCceEEEEe-------cchhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEec
Confidence 36789999998 467899999999999999998 8899999999999999999653 8999999999999998
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
.+++++.++-+|.+.|..+.|+ ..++++++.|++|.+||+.....
T Consensus 265 -~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~------------------------------- 309 (499)
T KOG0281|consen 265 -NTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTD------------------------------- 309 (499)
T ss_pred -cCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchH-------------------------------
Confidence 6799999999999999999998 78999999999999999986311
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR 272 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 272 (764)
-.....+.+|...|..+.|+ .+++++++.|.+|++|++.+++.++.+.+|...|-|+.+. |+
T Consensus 310 --------------it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r 371 (499)
T KOG0281|consen 310 --------------ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR 371 (499)
T ss_pred --------------HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce
Confidence 11234578999999999997 5699999999999999999999999999999999998875 89
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE----------EEeecC
Q 046871 273 YCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL----------LLCTGE 342 (764)
Q Consensus 273 ~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~----------~~~~~~ 342 (764)
++++||+|.+|++||+..|.|+..+++|.+-|.++.|. .+.+++|+.||+|++||+..+... ....+.
T Consensus 372 lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs 449 (499)
T KOG0281|consen 372 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 449 (499)
T ss_pred EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence 99999999999999999999999999999999999995 568999999999999999876432 123467
Q ss_pred CCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCc
Q 046871 343 HPILQLALHDDNIWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 343 ~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~ 375 (764)
+.|..+.|..-.+++++.|.+|-|||...+.+.
T Consensus 450 gRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 450 GRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 789999999888999999999999999876543
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-34 Score=302.21 Aligned_cols=378 Identities=18% Similarity=0.265 Sum_probs=295.4
Q ss_pred CCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
.+.||.+.|.++.|.+. .....|++|+.|+++++||+.+.. .++.++..|.+.|+++.|.+|+ .+++++.|..+.
T Consensus 142 ~fkG~gGvVssl~F~~~---~~~~lL~sg~~D~~v~vwnl~~~~-tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~ 217 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPH---WNRWLLASGATDGTVRVWNLNDKR-TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVII 217 (775)
T ss_pred EecCCCceEEEEEeCCc---cchhheeecCCCceEEEEEcccCc-hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEE
Confidence 34699999999999652 344579999999999999999653 3789999999999999999997 899999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCC-----CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC-c-C----------
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKN-----SNIVASGGLGAEVFIWDIEAALAPSKSGDAM-E-D---------- 171 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~-----~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~-~-~---------- 171 (764)
|||+ ...++.+++.. ...+.++.+. ++ +.+++++|.+|.+++||.+++....+..... + .
T Consensus 218 vwd~-~~~~~l~~lp~-ye~~E~vv~l-~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 218 VWDL-VQYKKLKTLPL-YESLESVVRL-REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred Eeeh-hhhhhhheech-hhheeeEEEe-chhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 9998 44555555432 3346666666 33 5699999999999999998765542221110 0 0
Q ss_pred ----------------------------------CcCcc-------ccCCCCC---------------------------
Q 046871 172 ----------------------------------DCSTG-------INGSGNS--------------------------- 183 (764)
Q Consensus 172 ----------------------------------~~~~~-------~~~~~~~--------------------------- 183 (764)
.+..+ +......
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 00000 0000000
Q ss_pred CcccceeecCCCCcccccccC---CCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce-----e--
Q 046871 184 LPVTSLRTIGSSNSISAHTSQ---SQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSK-----T-- 252 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~-----~-- 252 (764)
.....+.+.+.+..+.+|..+ ..........+|...|.+++++.. ..+|++++.|+++++|++...+. .
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 000123445556677777542 223344566899999999999774 46899999999999999976221 1
Q ss_pred --EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 253 --IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 253 --~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
.....|...|++++++|+.+.++|||.|.+.+||++.+.+...++.+|+..||++.|+|..+.++|+|.|++|+||.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 123479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccC
Q 046871 331 ATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 331 ~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
.+..++.++. |...|..+.|-.++ |++++.||-|++|++.+..+..++..|...++
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW--------------------- 593 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW--------------------- 593 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE---------------------
Confidence 9999999998 78899999998888 99999999999999999999988887655443
Q ss_pred CCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
+++.+++..+++||+.||.|.+|.=.|-
T Consensus 594 ---------------aL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 594 ---------------ALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ---------------EEeecCccceeEecCCCeEEEEeecCcH
Confidence 4556667889999999999999964443
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-34 Score=309.24 Aligned_cols=243 Identities=25% Similarity=0.448 Sum_probs=223.3
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC-----------------------------CCccceeecccccc
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD-----------------------------VGSCSATFESHVDW 86 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~-----------------------------~~~~~~~l~~h~~~ 86 (764)
.+++|..| |+|+.+||.|-.|..|++|.+... ......++-+|.++
T Consensus 379 ~~v~ca~f-----SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 379 QGVTCAEF-----SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred CcceeEee-----cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 47899998 899999999999999999998731 11234557899999
Q ss_pred eeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCC
Q 046871 87 VNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKS 165 (764)
Q Consensus 87 V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~ 165 (764)
|..+.|+|+. +|++||.|++||+|.+ .+..++..+++|..+|+++.|+ |.+.+|||++.|++.++|.....
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl-~t~s~~V~y~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~------ 525 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSL-DTWSCLVIYKGHLAPVWDVQFA-PRGYYFATASHDQTARLWSTDHN------ 525 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeec-ccceeEEEecCCCcceeeEEec-CCceEEEecCCCceeeeeecccC------
Confidence 9999999996 8999999999999998 5578888999999999999999 78999999999999999998752
Q ss_pred CCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 046871 166 GDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWD 245 (764)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd 245 (764)
...+.+.+|.+.|.|+.|+|+.+++++|+.|.+||+||
T Consensus 526 ------------------------------------------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWD 563 (707)
T KOG0263|consen 526 ------------------------------------------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWD 563 (707)
T ss_pred ------------------------------------------CchhhhcccccccceEEECCcccccccCCCCceEEEEE
Confidence 33455789999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcE
Q 046871 246 PRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSL 325 (764)
Q Consensus 246 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I 325 (764)
+.+|..++.|.||.++|.+++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|.++.|+.+|..|++|+.|.+|
T Consensus 564 v~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 564 VSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred cCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC
Q 046871 326 YLTDLATR 333 (764)
Q Consensus 326 ~iwd~~~~ 333 (764)
++||+...
T Consensus 644 ~lWD~~~~ 651 (707)
T KOG0263|consen 644 RLWDLTKV 651 (707)
T ss_pred EEEEchhh
Confidence 99998643
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=269.88 Aligned_cols=281 Identities=23% Similarity=0.430 Sum_probs=247.2
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
..||.+.|+++.| +|+|.+|||||.|..|.+|++... .+-...+++|.+.|..+.|..|+ .+++++.|.+|+.
T Consensus 43 l~gh~geI~~~~F-----~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 43 LPGHKGEIYTIKF-----HPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cCCCcceEEEEEE-----CCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 4699999999999 799999999999999999997653 34467788999999999999997 8999999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
||. .++++++.+++|.+.|+.+.-+..+..++.+++.|+++++||++......
T Consensus 117 wD~-~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-------------------------- 169 (338)
T KOG0265|consen 117 WDA-ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-------------------------- 169 (338)
T ss_pred Eec-ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh--------------------------
Confidence 997 67999999999999999998665566788999999999999999642221
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
....+..++++.|..++..+++|+-|+.|++||++.+.....+.||.+.|+.+..++
T Consensus 170 -----------------------t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 170 -----------------------TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred -----------------------ccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc
Confidence 223366789999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC----CeeeEEEeeecCc----eEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQ----QRCIHSYAVHTDS----VWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT- 340 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~----~~~~~~l~~h~~~----V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~- 340 (764)
+|.++++-+.|.++++||++- .+|+..+.+|.-. ....+|+|++..+-.|+.|..+++||......+..+.
T Consensus 227 ~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG 306 (338)
T KOG0265|consen 227 YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG 306 (338)
T ss_pred CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC
Confidence 999999999999999999864 5778888876532 4567899999999999999999999999877766665
Q ss_pred cCCCeEEEEeeCCc--eEEEeCCCcEEEe
Q 046871 341 GEHPILQLALHDDN--IWVATTDSSVHRW 367 (764)
Q Consensus 341 ~~~~V~~l~~spd~--l~~~s~dg~I~iw 367 (764)
|.+.|.++.|+|.. |.+++.|.+|++=
T Consensus 307 h~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 307 HYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cceeEEEeeecCCCcEEEEeccCceeEee
Confidence 67899999999999 8888899988763
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-33 Score=288.85 Aligned_cols=291 Identities=21% Similarity=0.354 Sum_probs=258.0
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~vW 110 (764)
..|+..|.|+.+ +|...+++++-.+|.|.|||.++ ...++.|+...-+|.+..|... +.+++|+.|..|+||
T Consensus 10 ~~rSdRVKsVd~-----HPtePw~la~LynG~V~IWnyet--qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 10 QSRSDRVKSVDF-----HPTEPWILAALYNGDVQIWNYET--QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hccCCceeeeec-----CCCCceEEEeeecCeeEEEeccc--ceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 358899999999 68889999999999999999998 6778999999999999999876 589999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
+. .+.+.++.+..|.++|.|++.+ |...++++++.|-.|++||.+..
T Consensus 83 ny-nt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~------------------------------- 129 (794)
T KOG0276|consen 83 NY-NTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENE------------------------------- 129 (794)
T ss_pred ec-ccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeeccCc-------------------------------
Confidence 97 6688999999999999999999 67889999999999999999863
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
....+.+.+|..-|.+++|+| |.+.+++++-|++|++|.+.+..+..++.+|...|+|+.+-+
T Consensus 130 ----------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 130 ----------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred ----------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence 334566899999999999999 788999999999999999999999999999999999999987
Q ss_pred CC--CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeE
Q 046871 270 TG--RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPIL 346 (764)
Q Consensus 270 dg--~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~ 346 (764)
-| .+|++|+.|.+|+|||.++..|++++.+|...|..+.|+|....++||+.||+++||+..+-+....+. .-.+++
T Consensus 194 ~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW 273 (794)
T KOG0276|consen 194 GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW 273 (794)
T ss_pred CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEE
Confidence 44 699999999999999999999999999999999999999999999999999999999998887766655 467899
Q ss_pred EEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 347 QLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 347 ~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
|++-.+.. +++|...|.| +..+-..+|.....
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~vsMd 307 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSV-TVKLGREEPAVSMD 307 (794)
T ss_pred EEeecCCCCeEEEeccCCcE-EEEccCCCCceeec
Confidence 99988877 5666655555 45666666655544
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-34 Score=276.86 Aligned_cols=312 Identities=21% Similarity=0.320 Sum_probs=268.8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCc
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY 128 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~ 128 (764)
..+.-|+.|.-.+..+.-+.--......+.+.+|...|+.+.|.|+- .+++++.|++|++||. .++++.+.+++|.+.
T Consensus 74 ~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~s 152 (406)
T KOG0295|consen 74 ETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDT-ETGELERSLRGHTDS 152 (406)
T ss_pred ccccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEc-cchhhhhhhhccccc
Confidence 33445555555555554443322345677788999999999999986 7888999999999997 668889999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
+..++|+ ..+.++++++.|-.+++||..+. ..
T Consensus 153 v~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~-----------------------------------------------~~ 184 (406)
T KOG0295|consen 153 VFDISFD-ASGKYLATCSSDLSAKLWDFDTF-----------------------------------------------FR 184 (406)
T ss_pred eeEEEEe-cCccEEEecCCccchhheeHHHH-----------------------------------------------HH
Confidence 9999999 78999999999999999999752 22
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
....+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-++.++.+|...|+.+..+.||..+++++.|.+|++|-+
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCC---------------CCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPT---------------FSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHD 352 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd---------------~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~sp 352 (764)
.++.|...++.|.-+|-+++|.|. +.++.+++.|++|++||+.++.++.++. |...|..++|+|
T Consensus 265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence 999999999999999999999763 2589999999999999999999988776 688999999999
Q ss_pred Cc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCC
Q 046871 353 DN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNR 430 (764)
Q Consensus 353 d~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg 430 (764)
.| |+++..|+++++||+.++++...+..+..+ ++.+.|..+.
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf------------------------------------vt~lDfh~~~ 388 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF------------------------------------VTSLDFHKTA 388 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeeccCCCcce------------------------------------eEEEecCCCC
Confidence 99 889999999999999999988887644333 3344555566
Q ss_pred cEEEEeeCCCcEEEEE
Q 046871 431 RHVLTKDAAGSVKLWE 446 (764)
Q Consensus 431 ~~l~t~s~dG~V~lWd 446 (764)
-+++||+-|.++++|.
T Consensus 389 p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceEEeccccceeeeee
Confidence 7999999999999996
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=285.01 Aligned_cols=279 Identities=20% Similarity=0.295 Sum_probs=243.8
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~ 162 (764)
...|..+.|.|+| +|++|+..|.+.+|+. ..-.....++.|..+|.++.|+ .++.++++|+.+|.|++|+.+-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmn--- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMN--- 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchh---
Confidence 5579999999997 8999999999999995 3233344567899999999999 89999999999999999998742
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc-CCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK-GHKESVYALAMNDSGNLLVSGGTEKVV 241 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~V~~l~~sp~g~~l~sgs~dg~I 241 (764)
.+.... .|...|.+++|+|....+++++.||+|
T Consensus 171 ----------------------------------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 171 ----------------------------------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred ----------------------------------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeE
Confidence 112233 345899999999999999999999999
Q ss_pred EEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC
Q 046871 242 RVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR 321 (764)
Q Consensus 242 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~ 321 (764)
+|||....+....+.+|.-.|+++.|+|....|++|+.|..|++||.+++.|+.++..|...|..+.|+|++++|+|+|.
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccc
Q 046871 322 DLSLYLTDLATRESLLLCT-GEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVS 397 (764)
Q Consensus 322 Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 397 (764)
|..++++|+++.+.+..+. |...|+++.|+|-. +.+|+.||.|..|.+...+++..+...+
T Consensus 285 D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH--------------- 349 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH--------------- 349 (464)
T ss_pred CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc---------------
Confidence 9999999999777776666 78899999999977 7889999999999998666555544332
Q ss_pred cCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 398 LEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
...|.++++.|=|..|+||+.|.++++|.-.
T Consensus 350 --------------------d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 350 --------------------DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --------------------ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 3346677778899999999999999999743
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-32 Score=285.30 Aligned_cols=434 Identities=17% Similarity=0.259 Sum_probs=323.1
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeC-CCeEEEEeCCCcEEE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVG-DNTLVSCSSDTTLKT 109 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~l~s~s~Dg~V~v 109 (764)
+.||..+|++|.| +..|.+|++||.|+.|.+||+-. ..-...+++|.+.|+...|.. +..++++|.|+.|++
T Consensus 103 fngHK~AVt~l~f-----d~~G~rlaSGskDt~IIvwDlV~--E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 103 FNGHKAAVTTLKF-----DKIGTRLASGSKDTDIIVWDLVG--EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred ecccccceEEEEE-----cccCceEeecCCCccEEEEEecc--ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEE
Confidence 4699999999999 68899999999999999999976 344788999999999999988 469999999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC---------CCCCCCC------cC---
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP---------SKSGDAM------ED--- 171 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~---------~~~~~~~------~~--- 171 (764)
||+ .+..|..+.-.|.+.|+.+++. .+.+++++.|+.+++|++....-. ....... ..
T Consensus 176 WdL-~tqhCf~Thvd~r~Eiw~l~~~---~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 176 WDL-ETQHCFETHVDHRGEIWALVLD---EKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred Eec-ccceeeeEEecccceEEEEEEe---cceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 998 5688999999999999999998 388999999999999999210000 0000000 00
Q ss_pred ----CcCccccCCC-----------------------------C------CC---------cccce---------e----
Q 046871 172 ----DCSTGINGSG-----------------------------N------SL---------PVTSL---------R---- 190 (764)
Q Consensus 172 ----~~~~~~~~~~-----------------------------~------~~---------~~~~l---------~---- 190 (764)
.......+.. . .. .+..+ .
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 0000000000 0 00 00000 0
Q ss_pred -------ecCCCCcccccccCCCC--------ccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 191 -------TIGSSNSISAHTSQSQG--------YVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 191 -------~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
..-.++.+..+...... .......+|...|.+++++.+...+++|+ .+.|.+|+..+.++++++
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTI 410 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEe
Confidence 00111112221111111 11235678999999999998877666664 577999999999999999
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC---
Q 046871 256 RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT--- 332 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~--- 332 (764)
.. +.+.+..|-|.++++++|...|.+.+||+.+...+.+.++|.+.||+++.+||+..+++||.|.+|++||+.-
T Consensus 411 ~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 411 TC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred cc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 74 4889999999999999999999999999999999999999999999999999999999999999999999741
Q ss_pred --Ce--EE------EEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccc---
Q 046871 333 --RE--SL------LLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVS--- 397 (764)
Q Consensus 333 --~~--~~------~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--- 397 (764)
+. .+ .++.....|.|+.+|||+ ++++--|++++||-+++.+---.+-+|. ..+.++..+++...
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKLIVT 567 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCeEEe
Confidence 11 11 234457789999999999 7777889999999999887666665544 44557777776543
Q ss_pred --cCCCCCcccCC--CCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhhhcccc
Q 046871 398 --LEGSTPVSSRF--KEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVS 473 (764)
Q Consensus 398 --~~~~~~~~~~~--~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~~~~~~ 473 (764)
.+-.+.+|.+. +.....+.++..|..+.|.|+...+.|++.||.|+-||-.+-++++.+..++.
T Consensus 568 gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~------------ 635 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS------------ 635 (888)
T ss_pred ccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh------------
Confidence 34445555432 23445567778899999999999999999999999999999999988854332
Q ss_pred cccceEEeeCceeEEEEeC
Q 046871 474 IPAWFTVDTRLGSLSVHLD 492 (764)
Q Consensus 474 ~~~w~~vd~~~g~l~v~l~ 492 (764)
..||-.-...|...|.-.
T Consensus 636 -ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 636 -EVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred -eeeeeEEcCCCCeEEecc
Confidence 357766666776666543
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.2e-32 Score=279.90 Aligned_cols=281 Identities=31% Similarity=0.539 Sum_probs=249.8
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
..+|.++|++++| +|++++|++++.||.|++|++.+ ......+..|...+..+.|++++ .+++++.|+.|++
T Consensus 5 ~~~h~~~i~~~~~-----~~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 5 LKGHTGGVTCVAF-----SPDGKLLATGSGDGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hcccCCCEEEEEE-----cCCCCEEEEeecCcEEEEEEeeC--CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3489999999999 78999999999999999999987 45677888999999999999997 8999999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
|++. .++....+..|...+.++.|+ +++.++++++.++.|.+||+.+.
T Consensus 78 ~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~------------------------------ 125 (289)
T cd00200 78 WDLE-TGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETG------------------------------ 125 (289)
T ss_pred EEcC-cccceEEEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCc------------------------------
Confidence 9984 456777788899999999999 56788888888999999999752
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
.....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|
T Consensus 126 ------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 187 (289)
T cd00200 126 ------------------KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP 187 (289)
T ss_pred ------------------EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC
Confidence 11223446788899999999999999888899999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEE
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQL 348 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l 348 (764)
+++.+++++.|+.|++||++.++.+..+..|...+.+++|+|++.++++++.||.|++||+.+++....+. +...|.++
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267 (289)
T ss_pred CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence 99999999999999999999999999998899999999999998889998889999999999888776665 56689999
Q ss_pred EeeCCc--eEEEeCCCcEEEee
Q 046871 349 ALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd 368 (764)
+|++++ +++++.|+.|++|+
T Consensus 268 ~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCCCEEEEecCCCeEEecC
Confidence 999986 89999999999996
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=302.80 Aligned_cols=283 Identities=30% Similarity=0.518 Sum_probs=249.8
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~ 112 (764)
|...|.|+.| |++|++|++++.|+.|++|+...........+.+|...|++++|++++ ++++++.|++|+|||+
T Consensus 158 ~~~sv~~~~f-----s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDF-----SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEE-----cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 4889999998 899999999999999999999662212677779999999999999998 8999999999999998
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
...+.+++++.+|...|++++|+ ++++++++|+.|++|++||++++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~--------------------------------- 278 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTG--------------------------------- 278 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCC---------------------------------
Confidence 66678999999999999999999 56699999999999999999873
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeccCCcC--eEEEEEc
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDN--IRSLLLD 268 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~--V~~l~~s 268 (764)
.....+.+|.+.|.+++|++++++|++++.|+.|++||+.++. +...+.++... ++++.|+
T Consensus 279 ---------------~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs 343 (456)
T KOG0266|consen 279 ---------------ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS 343 (456)
T ss_pred ---------------eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC
Confidence 3445688999999999999999999999999999999999998 56777776665 9999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCce---EEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec--CC
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV---WALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG--EH 343 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V---~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~ 343 (764)
|++.++++++.|+++++||+..++++..+.+|...+ .+...++.+.++++|+.|+.|++||+.++..+..+.. ..
T Consensus 344 p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~ 423 (456)
T KOG0266|consen 344 PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKA 423 (456)
T ss_pred CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCC
Confidence 999999999999999999999999999999998754 3344578999999999999999999998887776664 47
Q ss_pred CeEEEEeeCCc--eEEEe--CCCcEEEeeCC
Q 046871 344 PILQLALHDDN--IWVAT--TDSSVHRWPAE 370 (764)
Q Consensus 344 ~V~~l~~spd~--l~~~s--~dg~I~iwd~~ 370 (764)
.+..+.+++.. +++++ .|+.|++|..+
T Consensus 424 ~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 424 AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 88999999998 55555 58899999754
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=253.07 Aligned_cols=294 Identities=21% Similarity=0.310 Sum_probs=239.4
Q ss_pred ccceeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCC--Ceeeeec-cccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 75 SCSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSD--GTCIRTL-RQHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~--~~~~~~l-~~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
..++.+++|.+.+..++|+|. | .|++|+.|..|++|+.... -.+...+ .+|...|+.++|+ |.+++|++++.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCCcEEEEeeccc
Confidence 346788999999999999998 5 7999999999999997421 2344344 4799999999999 7789999999999
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
++.||.-..+. ......+.+|...|.|++|+++|
T Consensus 84 t~~Iw~k~~~e----------------------------------------------fecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 84 TVVIWKKEDGE----------------------------------------------FECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred eEEEeecCCCc----------------------------------------------eeEEeeeeccccceeEEEEcCCC
Confidence 99999865421 23345689999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCC---ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeeeEEEeeecCc
Q 046871 230 NLLVSGGTEKVVRVWDPRTG---SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG---QQRCIHSYAVHTDS 303 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~---~~~~~~~l~~h~~~ 303 (764)
++||+++.|+.|.||.+..+ ++...++.|+..|..+.|+|...+|+++|.|.+|++|+-. ...|++++.+|...
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T 197 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT 197 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce
Confidence 99999999999999998744 5678899999999999999999999999999999999865 46799999999999
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCC
Q 046871 304 VWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 304 V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
|++++|++.|..|++++.|++|+||...+. ....+...+..+.|. ++ |++++.|+.|++|..........+.
T Consensus 198 VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~--- 270 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWN--- 270 (312)
T ss_pred EEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHH---
Confidence 999999999999999999999999986522 122356788999999 66 9999999999999765321111100
Q ss_pred cceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecC-CcEEEEeeCCCcEEEEEcc
Q 046871 383 SFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNN-RRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~d-g~~l~t~s~dG~V~lWdi~ 448 (764)
+ .......+...|..+.+.|. +.+|++++.||.|++|.+.
T Consensus 271 ------l--------------------~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 271 ------L--------------------LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ------H--------------------HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0 00011122335888899995 6799999999999999875
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.2e-32 Score=253.30 Aligned_cols=282 Identities=21% Similarity=0.318 Sum_probs=236.0
Q ss_pred CCCCCCeeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCC-CCCccceee-cccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLAD-DVGSCSATF-ESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~-~~~~~~~~l-~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
.||.+.|-.++| +|. |..|||||.|..||||+... ....+...+ .+|+..|.+++|+|.+ +|+++|.|.++
T Consensus 11 ~gh~~r~W~~aw-----hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 11 SGHKDRVWSVAW-----HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred cCCCCcEEEEEe-----ccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 599999999999 566 77999999999999999983 334555455 4799999999999997 89999999999
Q ss_pred EEecCC-CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 108 KTWNCS-SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 108 ~vWd~~-~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
.||.-. .+.+++.++.+|...|.|++|+ .++++||+++.|+.|-+|.+.....
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddE------------------------- 139 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDE------------------------- 139 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCc-------------------------
Confidence 999732 2247899999999999999999 8999999999999999999874211
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEeccCCcCeE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR---TGSKTIKLRGHTDNIR 263 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~---~~~~~~~l~~h~~~V~ 263 (764)
-.....++.|...|..+.|+|...+|++++.|.+|++|+-. ...++.++.+|...|.
T Consensus 140 --------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW 199 (312)
T KOG0645|consen 140 --------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVW 199 (312)
T ss_pred --------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEE
Confidence 12334588999999999999999999999999999999765 3478999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe--E----E-
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE--S----L- 336 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~--~----~- 336 (764)
+++|++.|..|++++.|++++||-..+.- -..|...++.++|. ...|++++.|+.|+++...... + +
T Consensus 200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~ 273 (312)
T KOG0645|consen 200 SLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLA 273 (312)
T ss_pred EEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHH
Confidence 99999999999999999999999865211 12477889999998 4589999999999999876431 1 1
Q ss_pred -EEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCC
Q 046871 337 -LLCTGEHPILQLALHDDN---IWVATTDSSVHRWPAE 370 (764)
Q Consensus 337 -~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~ 370 (764)
....|+..|+++.|.|.. |++++.||.|++|.+.
T Consensus 274 ~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 112356689999999953 9999999999999864
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-32 Score=250.26 Aligned_cols=275 Identities=25% Similarity=0.378 Sum_probs=241.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|.++|+++.| +-||+|.++++.|.+|++|+... +.+++++.+|...|.+++.+.|+ .+++|+.|..|.+||
T Consensus 15 ~~qgaV~avry-----N~dGnY~ltcGsdrtvrLWNp~r--g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 15 CAQGAVRAVRY-----NVDGNYCLTCGSDRTVRLWNPLR--GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred ccccceEEEEE-----ccCCCEEEEcCCCceEEeecccc--cceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 79999999999 68999999999999999999988 78999999999999999999887 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ .+++..+.+.+|.+.|+.++|+ .+...+++|+.|..+++||.+...
T Consensus 88 V-~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s------------------------------- 134 (307)
T KOG0316|consen 88 V-NTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRS------------------------------- 134 (307)
T ss_pred c-ccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccCC-------------------------------
Confidence 7 6799999999999999999999 889999999999999999998642
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
..+++.+....+.|.++..+ +..|++|+.||++|.||++.|+......+ .+|++++|++|+
T Consensus 135 ---------------~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~ 195 (307)
T KOG0316|consen 135 ---------------FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDG 195 (307)
T ss_pred ---------------CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCC
Confidence 12234455667889999887 67899999999999999999988777665 489999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEE--EEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCC-C-eEE
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL--ASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEH-P-ILQ 347 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l--~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~-V~~ 347 (764)
+..++++.|+++++.|-.+|+.++.+.+|...-..+ +++....++++|+.||.|++||+.....+..+.+.+ . |..
T Consensus 196 nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 999999999999999999999999999998765444 456777899999999999999999998888777644 3 689
Q ss_pred EEeeCCc--eEEEeCCCcEEEe
Q 046871 348 LALHDDN--IWVATTDSSVHRW 367 (764)
Q Consensus 348 l~~spd~--l~~~s~dg~I~iw 367 (764)
+.++|.. +++++.. .+..|
T Consensus 276 l~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eecccCccceeEecCC-ceece
Confidence 9999988 6666544 44455
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-32 Score=294.29 Aligned_cols=282 Identities=20% Similarity=0.332 Sum_probs=232.1
Q ss_pred eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
.|..++......++|..|+ +++.++|.|-.|..|++|.+........... . ....+.+.+.+.
T Consensus 369 ic~YT~~nt~~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~-~---------------~l~~~d~~sad~ 431 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDA-S---------------DLSNIDTESADV 431 (707)
T ss_pred EEEEEEEEcCCcceeEeec-CCcchhhccccccEEEEEecchhhhccccch-h---------------hhccccccccch
Confidence 4555665556679999999 8888999999999999999985321111000 0 000000111111
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEE
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 276 (764)
...+.+.. .......+.+|.++|+++.|+|+.++|++++.|++||+|.+.+..++..++||..+|..+.|+|.|-+++|
T Consensus 432 ~~~~~D~~-~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFat 510 (707)
T KOG0263|consen 432 DVDMLDDD-SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFAT 510 (707)
T ss_pred hhhhcccc-CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEe
Confidence 12222222 23334558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-
Q 046871 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN- 354 (764)
Q Consensus 277 gs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~- 354 (764)
+|.|++.++|......+++.+.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.+. |.++|.+++|+|+|
T Consensus 511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred cCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998887 68899999999999
Q ss_pred -eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEE
Q 046871 355 -IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHV 433 (764)
Q Consensus 355 -l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l 433 (764)
|++|+.|+.|.+||+.++.++..+.+|.+ .|.++.|+.||..|
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~------------------------------------ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTG------------------------------------TIYSLSFSRDGNVL 634 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccC------------------------------------ceeEEEEecCCCEE
Confidence 99999999999999999988877766522 24566777799999
Q ss_pred EEeeCCCcEEEEEccccEE
Q 046871 434 LTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 434 ~t~s~dG~V~lWdi~tg~~ 452 (764)
++++.|.+|++||+..-..
T Consensus 635 asgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EecCCCCeEEEEEchhhcc
Confidence 9999999999999885443
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-31 Score=272.53 Aligned_cols=284 Identities=26% Similarity=0.452 Sum_probs=245.7
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEe
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwd 155 (764)
+.++.+|.+.|.++.|++++ .+++++.|+.|++|++. .+.....+..|...+..+.|+ ++++.+++++.++.|++||
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAAS-ADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-CCCcEEEEecCCcceeEEEEC-CCCCEEEEEcCCCeEEEEE
Confidence 35677999999999999996 88999999999999974 455677788899999999999 6778999999999999999
Q ss_pred CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE
Q 046871 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235 (764)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 235 (764)
+.+. .....+..|...+.++.|++++++++++
T Consensus 80 ~~~~------------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 111 (289)
T cd00200 80 LETG------------------------------------------------ECVRTLTGHTSYVSSVAFSPDGRILSSS 111 (289)
T ss_pred cCcc------------------------------------------------cceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence 9863 1122345677889999999998889888
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCE
Q 046871 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSH 315 (764)
Q Consensus 236 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~ 315 (764)
+.++.|++||+++++....+..|...+.++.|+|++.++++++.|+.|++||+++++.+..+..|...+.++.|+|+++.
T Consensus 112 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 88999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEe-ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccc
Q 046871 316 VYSGGRDLSLYLTDLATRESLLLC-TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFS 392 (764)
Q Consensus 316 l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s 392 (764)
+++++.|+.|++||+..++.+..+ .+..++.++.|++++ +++++.++.|++|++.+++....+..
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~------------ 259 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG------------ 259 (289)
T ss_pred EEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc------------
Confidence 999999999999999998888877 567799999999988 44444599999999987655444331
Q ss_pred ccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 393 RARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
+...+..++|++++++|++++.||.|++||
T Consensus 260 ------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 ------------------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------------------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 123477889999999999999999999996
No 40
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=281.72 Aligned_cols=407 Identities=21% Similarity=0.290 Sum_probs=308.4
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeE-EEEeC-C-CeEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVND-AVLVG-D-NTLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~-v~~s~-d-~~l~s~s~Dg~V~ 108 (764)
.||...|..+++ -++..++++|+||++++|+-..++......+.+|.+.|.. ++|.+ + +++++|+.|++|.
T Consensus 11 ~gH~~DVr~v~~------~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 11 EGHKSDVRAVAV------TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred ccCccchheeEe------cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 399999999998 4567899999999999999877656666778999999988 88875 3 4899999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+|.. ....++.++.+|...|.|++.. .++. +++|+.|.++++|.+...
T Consensus 85 v~~~-~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~~~l----------------------------- 132 (745)
T KOG0301|consen 85 VFKL-SQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRIGEL----------------------------- 132 (745)
T ss_pred EEec-CCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEecchhh-----------------------------
Confidence 9997 6688999999999999999977 4444 999999999999988642
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
...+.+|+.+|++++.-|++ .+++|+.|+.|++|.- ++.+.+|.+|++-|+.+++-
T Consensus 133 ---------------------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl 188 (745)
T KOG0301|consen 133 ---------------------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL 188 (745)
T ss_pred ---------------------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEe
Confidence 23378999999999999987 8999999999999984 78899999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCC-CeEE
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEH-PILQ 347 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~V~~ 347 (764)
+++ .|++++.||.|++|++ +++++.++.+|+.-|+++....++..++|++.|++++||+.. ++.+.+.++. .|++
T Consensus 189 ~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 189 DDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWS 264 (745)
T ss_pred cCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEE
Confidence 765 5789999999999999 899999999999999999988888999999999999999987 7778888766 8999
Q ss_pred EEeeCCc-eEEEeCCCcEEEeeCCCCCCce--eeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEe
Q 046871 348 LALHDDN-IWVATTDSSVHRWPAEGRNPQK--VFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQH 424 (764)
Q Consensus 348 l~~spd~-l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~ 424 (764)
+.+-++| |++|+.||.||||.....+... .+..-...+...++.... .. |.+...++.......-+|..
T Consensus 265 a~~L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~--~~-g~v~~~~lPg~e~L~spGt~----- 336 (745)
T KOG0301|consen 265 AKVLLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTE--EV-GGVKKDDLPGLEILKSPGTR----- 336 (745)
T ss_pred EEEeeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhh--hh-CccccccCCchhhhcCCCCC-----
Confidence 9999888 9999999999999886433211 000000000000000000 00 10000001111111122221
Q ss_pred EEecCCcEEEEe-eCCCcEEEEEccccEEeeecC-C-Cch-hhhhhhhhcccccccceEEeeCceeEEEEe----CCCCc
Q 046871 425 EILNNRRHVLTK-DAAGSVKLWEITRGVVVEDYG-K-ASF-EEKKEELFEMVSIPAWFTVDTRLGSLSVHL----DTPQC 496 (764)
Q Consensus 425 ~~s~dg~~l~t~-s~dG~V~lWdi~tg~~i~~~~-~-~~f-~~~~~~~~~~~~~~~w~~vd~~~g~l~v~l----~~~~~ 496 (764)
||...+.. +++...+-|.....+.+++.. . +.+ ....+.++++....+-|.||...|....+| +++.+
T Consensus 337 ----dGq~~~Vr~~~~v~ayqws~~e~r~ikdvig~~~~~~~~s~K~l~EGKeYDyvF~VDi~dGep~~kLPyN~sdnPy 412 (745)
T KOG0301|consen 337 ----DGQTKVVRDGENVEAYQWSNGEWRWIKDVIGEVVAAQGNSGKVLHEGKEYDYVFDVDIGDGEPPYKLPYNVSDNPY 412 (745)
T ss_pred ----CCcEEEEEcCCcceeEEeecccceeeccccccccccCCCCcceeecccccceEEEEEccCCCCceecCcCCCCCHH
Confidence 45444333 335667778877778887442 1 122 223466777888899999999999998888 66788
Q ss_pred cCcccccccccCCCCCCCcc
Q 046871 497 FSAEMYSADLQIAGKPEDDK 516 (764)
Q Consensus 497 f~~~~~a~~~~~~~~~~d~~ 516 (764)
+.|+.|.....|+...-||-
T Consensus 413 ~AA~~FL~k~~Lp~sy~dqv 432 (745)
T KOG0301|consen 413 QAAQKFLEKNQLPVSYRDQV 432 (745)
T ss_pred HHHHHHHHHccCCHHHHHHH
Confidence 88888887777776555543
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=278.81 Aligned_cols=282 Identities=21% Similarity=0.362 Sum_probs=243.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||+.+|+++.|.+ ..+.+|++++.|+.|+||++-. .+.++++|.+|..+|.+++|++++ .++|+|.|+.|++|
T Consensus 211 ~gH~kgvsai~~fp----~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFP----KKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred cCCccccchhhhcc----ceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 49999999999953 2789999999999999999976 478999999999999999999998 89999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
|. .+|+++..+. ....+.|+.|.|.+.+.|++|+.|+.|+.||++++
T Consensus 286 Dt-ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~------------------------------- 332 (503)
T KOG0282|consen 286 DT-ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG------------------------------- 332 (503)
T ss_pred cc-ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-------------------------------
Confidence 97 6688888775 34567899999777799999999999999999984
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCcCeEEEEEcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR-GHTDNIRSLLLDS 269 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp 269 (764)
..+.....|-+.|..+.|-++|+++++.+.|+.++||+.+....+.... .+.-...++..+|
T Consensus 333 -----------------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 333 -----------------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred -----------------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 3445567788999999999999999999999999999998876554332 2233567899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---eeeEEEeeecC--ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCC
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQ---RCIHSYAVHTD--SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEH 343 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~---~~~~~l~~h~~--~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~ 343 (764)
+++++++-+.|+.|.+|.+... .....|.+|.. --..+.|||||++|++|+.||.+.+||.++-+.+..++ |..
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~ 475 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ 475 (503)
T ss_pred CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence 9999999999999999987532 23455777764 35678899999999999999999999999998887777 568
Q ss_pred CeEEEEeeCCc---eEEEeCCCcEEEee
Q 046871 344 PILQLALHDDN---IWVATTDSSVHRWP 368 (764)
Q Consensus 344 ~V~~l~~spd~---l~~~s~dg~I~iwd 368 (764)
++..+.|+|.. +++++.||.|++|+
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999987 99999999999996
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=276.34 Aligned_cols=238 Identities=24% Similarity=0.433 Sum_probs=217.4
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~ 113 (764)
.-+|.+..|. ...+++++|+.|..|||++.++ ++.+.+|++|.+-|.+++.+|.. +++++|.|-+|++||++
T Consensus 55 ~~PvRa~kfi-----aRknWiv~GsDD~~IrVfnynt--~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 55 EVPVRAAKFI-----ARKNWIVTGSDDMQIRVFNYNT--GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred ccchhhheee-----eccceEEEecCCceEEEEeccc--ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 3466666664 6678999999999999999999 78899999999999999999986 99999999999999998
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
....+.+++.+|..+|.+++|.|.|.+.+|+++.|++|++|.+.+.
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---------------------------------- 173 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---------------------------------- 173 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------------------------
Confidence 8889999999999999999999999999999999999999999763
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG--NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g--~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
....++.+|...|.|+.+-+.| .+|++|+.|..|+|||.++..++.++.||..+|..++|+|.-
T Consensus 174 --------------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 174 --------------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred --------------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 2335588999999999998744 699999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEE
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL 327 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~i 327 (764)
..+++||.||++|||+..+-+...++...-++|||++..+..+.++.|...|.|.+
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999998899888899999999998888888887776643
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.7e-33 Score=269.41 Aligned_cols=282 Identities=19% Similarity=0.337 Sum_probs=234.6
Q ss_pred cccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 046871 83 HVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162 (764)
Q Consensus 83 h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~ 162 (764)
....|.|+.+. |+.+++|..|.+|+|||. .+..+.+.+.+|++.|.|+.|. ...+++|+.|.+|++||.+++
T Consensus 196 ~skgVYClQYD-D~kiVSGlrDnTikiWD~-n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DEKIVSGLRDNTIKIWDK-NSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred cCCceEEEEec-chhhhcccccCceEEecc-ccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC---
Confidence 35678998885 457999999999999995 6688999999999999999998 569999999999999999985
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVR 242 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~ 242 (764)
..+..+..|...|..+.|+ ..++++++.|..|.
T Consensus 268 ---------------------------------------------e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 268 ---------------------------------------------EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIA 300 (499)
T ss_pred ---------------------------------------------chhhHHhhhcceeEEEEEe--CCEEEEecCCceeE
Confidence 3345578899999999998 67999999999999
Q ss_pred EEeCCCCc---eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 243 VWDPRTGS---KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 243 iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
+||+.... +...+.||...|+.+.|+ .++++++|.|.+|++|++.+++++.++.+|...|.|+.+ .++++++|
T Consensus 301 VWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 301 VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred EEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEec
Confidence 99998764 345678999999999987 669999999999999999999999999999999988887 57899999
Q ss_pred cCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccccccccc
Q 046871 320 GRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSL 398 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 398 (764)
++|.+|++||+..|.++..++ |+.-|.|+.|....+++|+.||.|++||+..+...+.... .+...
T Consensus 377 SSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~-------~~Cl~------ 443 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAS-------TLCLR------ 443 (499)
T ss_pred CCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCccccc-------chHHH------
Confidence 999999999999999998877 5677999999999999999999999999987543221110 00000
Q ss_pred CCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEE
Q 046871 399 EGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~ 452 (764)
...++...+..+.| |..++++++.|.+|.+||+..|-.
T Consensus 444 --------------~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 444 --------------TLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred --------------hhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 00111223455555 668899999999999999987654
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=308.90 Aligned_cols=284 Identities=14% Similarity=0.249 Sum_probs=235.8
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC--C----ccceeecccccceeEEEEeCC--CeEEE
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV--G----SCSATFESHVDWVNDAVLVGD--NTLVS 100 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~--~----~~~~~l~~h~~~V~~v~~s~d--~~l~s 100 (764)
....+|...|++++| ++++++||+|+.|+.|+|||+.... . .....+. +...|.+++|++. .+|++
T Consensus 477 ~~~~~~~~~V~~i~f-----s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 477 GDLLNSSNLVCAIGF-----DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred ccccCCCCcEEEEEE-----CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEE
Confidence 344569999999999 7999999999999999999986411 1 1122333 3467999999875 38999
Q ss_pred EeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 101 CSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 101 ~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
++.||+|++||+ ..++.+..+.+|.+.|++++|+|.++.+|++|+.|+.|++||++++..
T Consensus 551 ~~~Dg~v~lWd~-~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~------------------- 610 (793)
T PLN00181 551 SNFEGVVQVWDV-ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS------------------- 610 (793)
T ss_pred EeCCCeEEEEEC-CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-------------------
Confidence 999999999997 457788889999999999999976889999999999999999976311
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCc-eeEEeccC
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN-DSGNLLVSGGTEKVVRVWDPRTGS-KTIKLRGH 258 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s-p~g~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h 258 (764)
...+. +...|.++.|+ ++|.+|++|+.||.|++||+++.+ .+..+.+|
T Consensus 611 -----------------------------~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h 660 (793)
T PLN00181 611 -----------------------------IGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH 660 (793)
T ss_pred -----------------------------EEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence 11122 23568899995 579999999999999999998875 56778899
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ------QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~------~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
...|.++.|. ++.+|++++.|++|++||+.. ..++.++.+|...+.+++|+|++.+|++|+.|+.|++|+...
T Consensus 661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999997 788999999999999999974 367889999999999999999999999999999999999876
Q ss_pred CeEEEEe--------------ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 333 RESLLLC--------------TGEHPILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 333 ~~~~~~~--------------~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
...+..+ .+...|.+++|++++ +++|+.+|.|++|++
T Consensus 740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5443221 123469999999998 899999999999986
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=285.80 Aligned_cols=289 Identities=21% Similarity=0.338 Sum_probs=258.4
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
..-++.|..|+| +|...+++++-..|.|++||..- +.++..|..|.++|..+.|+|.+ .++||+.|-.|+||
T Consensus 6 EskSsRvKglsF-----HP~rPwILtslHsG~IQlWDYRM--~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 6 ESKSSRVKGLSF-----HPKRPWILTSLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred hcccccccceec-----CCCCCEEEEeecCceeeeehhhh--hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 345678999999 68889999999999999999987 77899999999999999999997 99999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
+. ...+|+.++.+|-++|..+.|+ +.-.++++++.|.+|+||+..+
T Consensus 79 nY-k~rrclftL~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqs-------------------------------- 124 (1202)
T KOG0292|consen 79 NY-KTRRCLFTLLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQS-------------------------------- 124 (1202)
T ss_pred ec-ccceehhhhccccceeEEeecc-CCCceEEEccCCCeEEEEeccC--------------------------------
Confidence 97 6789999999999999999999 7789999999999999999987
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------------
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS-------------------- 250 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~-------------------- 250 (764)
+..+..+.+|..-|.|..|+|....+++++-|.+||+||+..-+
T Consensus 125 ----------------r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 125 ----------------RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred ----------------CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 34556789999999999999999999999999999999974210
Q ss_pred ---------eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 251 ---------KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR--CIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 251 ---------~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~--~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
..+.+.||...|+.++|+|.-..|++|+.|..|++|.+...+ .+-+..+|.+.|.++-|+|...+++|.
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence 123467899999999999999999999999999999986544 356778999999999999999999999
Q ss_pred cCCCcEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCcee
Q 046871 320 GRDLSLYLTDLATRESLLLCTG-EHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~ 377 (764)
|.|++|++||+.....++.+.. ++..+.++.+|.. ++.++.|+.+.+|.++...+...
T Consensus 269 sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~ 328 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYA 328 (1202)
T ss_pred CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEE
Confidence 9999999999999999998874 6789999999999 99999999999999886555433
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=254.61 Aligned_cols=286 Identities=20% Similarity=0.276 Sum_probs=243.6
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
.++..+.+|.+.|+.+.|+|+| .|++++.|..|.+|+...+.+-...+++|.+.|..+.|. .++..+++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~-~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM-RDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec-cCCCEEEEecCCceEEE
Confidence 4466678999999999999998 899999999999999756666677888999999999999 89999999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLL 232 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l 232 (764)
||+++++. ....++|..-|.++.-+.-| .++
T Consensus 117 wD~~tG~~------------------------------------------------~rk~k~h~~~vNs~~p~rrg~~lv 148 (338)
T KOG0265|consen 117 WDAETGKR------------------------------------------------IRKHKGHTSFVNSLDPSRRGPQLV 148 (338)
T ss_pred Eeccccee------------------------------------------------eehhccccceeeecCccccCCeEE
Confidence 99998533 34467888888888855544 456
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
.+|+.|+++++||+++...+.++. ..-.++++.|..++..+++|+-|+.|++||++.+...+++.+|.+.|+.+..+|+
T Consensus 149 ~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~ 227 (338)
T KOG0265|consen 149 CSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY 227 (338)
T ss_pred EecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccC
Confidence 689999999999999988888775 4568999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCC----eEEEEeec-----CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecC
Q 046871 313 FSHVYSGGRDLSLYLTDLATR----ESLLLCTG-----EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 313 ~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~-----~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~ 381 (764)
|.++.+-+.|.++++||++.. +++..+.. +.....++|+|++ +-+++.|..+++||..+...+..+++|
T Consensus 228 gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh 307 (338)
T KOG0265|consen 228 GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH 307 (338)
T ss_pred CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence 999999999999999999743 34555553 3346788999998 778889999999999887665555544
Q ss_pred CcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 382 GSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 382 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
... |..+.|.|....|++++.|.+|++=+
T Consensus 308 ~gs------------------------------------vn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 308 YGS------------------------------------VNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cee------------------------------------EEEeeecCCCcEEEEeccCceeEeec
Confidence 332 55778888999999999999998743
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=6.5e-30 Score=303.23 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=244.8
Q ss_pred CCcEEEEeCCCCCCcc---ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC---Ce----eeeeccccCCce
Q 046871 61 DGTLKRWSLADDVGSC---SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD---GT----CIRTLRQHSDYV 129 (764)
Q Consensus 61 Dg~I~iWd~~~~~~~~---~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~---~~----~~~~l~~h~~~V 129 (764)
+|.+++|+..+..... ...+..|...|.+++|++++ ++++|+.|++|+||++... +. ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 6788999887622111 12244589999999999997 8999999999999996321 11 122233 34678
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcc
Q 046871 130 TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV 209 (764)
Q Consensus 130 ~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 209 (764)
.+++|++..+.+|++++.||.|++||+.++ ..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------------------------------------------~~ 567 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS------------------------------------------------QL 567 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC------------------------------------------------eE
Confidence 999999777899999999999999999763 22
Q ss_pred ceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc-CCCCEEEEEeCCCcEEEEe
Q 046871 210 PIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD-STGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 210 ~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s-pdg~~l~sgs~Dg~I~iwd 287 (764)
...+.+|.+.|++++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..|.++.|+ ++|.+|++|+.||.|++||
T Consensus 568 ~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 568 VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 344678999999999997 7899999999999999999999988888754 689999995 5799999999999999999
Q ss_pred CCCCe-eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC------eEEEEee-cCCCeEEEEeeCCc--eEE
Q 046871 288 LGQQR-CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR------ESLLLCT-GEHPILQLALHDDN--IWV 357 (764)
Q Consensus 288 l~~~~-~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~------~~~~~~~-~~~~V~~l~~spd~--l~~ 357 (764)
+++.+ .+.++.+|...|+++.|. ++.+|++++.|++|++||+..+ ..+..+. |...+.+++|++++ |++
T Consensus 647 ~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 647 LRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred CCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEE
Confidence 98765 577888999999999997 6789999999999999999743 3444443 56778999999988 899
Q ss_pred EeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee
Q 046871 358 ATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD 437 (764)
Q Consensus 358 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s 437 (764)
|+.|+.|++|+.....+...+....... ... .....+...|..++|++++..|++++
T Consensus 726 gs~D~~v~iw~~~~~~~~~s~~~~~~~~---------------------~~~--~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 726 GSETNEVFVYHKAFPMPVLSYKFKTIDP---------------------VSG--LEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EeCCCEEEEEECCCCCceEEEecccCCc---------------------ccc--cccCCCCcEEEEEEEcCCCCeEEEec
Confidence 9999999999987665443332110000 000 00112234588999999999999999
Q ss_pred CCCcEEEEEc
Q 046871 438 AAGSVKLWEI 447 (764)
Q Consensus 438 ~dG~V~lWdi 447 (764)
.||.|++||+
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999996
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.1e-30 Score=256.70 Aligned_cols=302 Identities=21% Similarity=0.333 Sum_probs=243.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEe-CCC---eEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLV-GDN---TLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s-~d~---~l~s~s~Dg~V 107 (764)
.-|.+.|.++.. . +++++||++||.+++||.. +++..++.+|.++|.+++|. ++. .|++++.|.++
T Consensus 102 ~~hdDWVSsv~~------~-~~~IltgsYDg~~riWd~~---Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 102 FLHDDWVSSVKG------A-SKWILTGSYDGTSRIWDLK---GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccchhhhhhhcc------c-CceEEEeecCCeeEEEecC---CceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 468999999998 2 7899999999999999998 67899999999999988886 332 69999999999
Q ss_pred EEecCCCCCe---eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 108 KTWNCSSDGT---CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 108 ~vWd~~~~~~---~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
++|.+..... +++.-.+|...|.+++.. +++..+++|+.|..|.+|+....... ........
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~-~~E~~s~~------------- 236 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEED-ELESSSNR------------- 236 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCccc-cccccchh-------------
Confidence 9999854332 334445999999999999 88999999999999999994321110 00000000
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEE
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 264 (764)
....-........+..+..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.+
T Consensus 237 ---------rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 237 ---------RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC 305 (423)
T ss_pred ---------hhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence 0000000111122445667899999999999988 67899999999999999999999888874 567999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCe---eeEEEeeecCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCe-EEEEe
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQR---CIHSYAVHTDSVWALASTPTFS-HVYSGGRDLSLYLTDLATRE-SLLLC 339 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~---~~~~l~~h~~~V~~l~~spd~~-~l~sgs~Dg~I~iwd~~~~~-~~~~~ 339 (764)
+.++|..++|++|+.|..|++||.+++. ..++|.+|.+.|.++.|+|... +|++|+.|+++++||+++.. ++..+
T Consensus 306 i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred eecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 9999999999999999999999998753 5678899999999999999654 57799999999999999776 55544
Q ss_pred -ecCCCeEEEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 340 -TGEHPILQLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 340 -~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
.|.+.|.++.|...+ |++|+.|.+|+|+.-
T Consensus 386 ~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 386 AGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 478899999999886 999999999999864
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.7e-30 Score=285.21 Aligned_cols=287 Identities=27% Similarity=0.428 Sum_probs=243.9
Q ss_pred eeeccc-ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCe--eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 78 ATFESH-VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGT--CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 78 ~~l~~h-~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~--~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
..+..| ...|.++.|++++ .+++++.|+.+++|+. .... ..+.+.+|...|.+++|+ +++.++++++.|++|++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs-~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFS-PDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeec-ccccchhhccccccccceeeeEEC-CCCcEEEEecCCceEEE
Confidence 334444 7889999999997 8899999999999997 4455 677778999999999999 78999999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
||+... +.....+.+|...|++++|+|+|++++
T Consensus 230 wd~~~~-----------------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~ 262 (456)
T KOG0266|consen 230 WDLKDD-----------------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLV 262 (456)
T ss_pred eeccCC-----------------------------------------------CeEEEEecCCCCceEEEEecCCCCEEE
Confidence 999432 344566889999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eeEEEeeecCc--eEEEEE
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR--CIHSYAVHTDS--VWALAS 309 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~--~~~~l~~h~~~--V~~l~~ 309 (764)
+|+.|++|+|||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.++. ++..+..+... ++++.|
T Consensus 263 Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 263 SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 67888877666 999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-CC---CeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCc
Q 046871 310 TPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-EH---PILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGS 383 (764)
Q Consensus 310 spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~---~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 383 (764)
+|++.+++++..|+.+++||+..+.....+.. .. .+.+...++.+ +++++.|+.|++|++.++..+..+.++..
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~ 422 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK 422 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC
Confidence 99999999999999999999998887776653 22 33344456666 99999999999999998877766665421
Q ss_pred ceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee--CCCcEEEEEcc
Q 046871 384 FIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD--AAGSVKLWEIT 448 (764)
Q Consensus 384 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s--~dG~V~lWdi~ 448 (764)
..+..+.+.+...++++++ .|+.+++|...
T Consensus 423 -----------------------------------~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 423 -----------------------------------AAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -----------------------------------CceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 2234555666778888888 78999999753
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9e-31 Score=259.23 Aligned_cols=284 Identities=18% Similarity=0.284 Sum_probs=240.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC-CCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD-VGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~-~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
..|+..|.-+.| |++|+||||++.|.+..||++..+ ..+..+++.+|..+|..+.|+||. +|++|+.|..+.+
T Consensus 221 ~~htdEVWfl~F-----S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 221 QDHTDEVWFLQF-----SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhCCCcEEEEEE-----cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 479999999999 899999999999999999998543 356688999999999999999996 8999999999999
Q ss_pred ecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 110 WNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 110 Wd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
||. .++.+...+. +|...+.+++|. +|+..+++|+.|+.|..||++.....
T Consensus 296 wDv-~tgd~~~~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~~~-------------------------- 347 (519)
T KOG0293|consen 296 WDV-DTGDLRHLYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNILG-------------------------- 347 (519)
T ss_pred ccC-CcchhhhhcccCcCCCcceeEEc-cCCceeEecCCCCcEEEecCCcchhh--------------------------
Confidence 997 5566665553 356889999999 78999999999999999999863110
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
.|. ......|.++++++||+++++.+.|..|++++..+........ ...+|+++++|
T Consensus 348 -----------~W~-----------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS 404 (519)
T KOG0293|consen 348 -----------NWE-----------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSIS 404 (519)
T ss_pred -----------ccc-----------ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEc
Confidence 010 0112468999999999999999999999999988765554443 45789999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc--eEEEEEc-CCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCC
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS--VWALAST-PTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHP 344 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~--V~~l~~s-pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~ 344 (764)
.|++++++--.+..|++||++..+.++.+.+|... +-.-+|- -+..++++|+.|+.|+||+..+++++..+. |...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 99999999999999999999999999999999865 3334453 456899999999999999999999998877 5678
Q ss_pred eEEEEeeCCc---eEEEeCCCcEEEeeCCC
Q 046871 345 ILQLALHDDN---IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 345 V~~l~~spd~---l~~~s~dg~I~iwd~~~ 371 (764)
|+|++|+|.. +++|+.||+|+||....
T Consensus 485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999987 99999999999997753
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.5e-31 Score=245.38 Aligned_cols=287 Identities=23% Similarity=0.345 Sum_probs=252.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||+.+|-.++|.+. .|+|-+|++++.||.-.+-+-++ +.-+-+|++|.+.|+...+..+- +-++++.|-+-+||
T Consensus 11 ~ghtrpvvdl~~s~i--tp~g~flisa~kd~~pmlr~g~t--gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPI--TPDGYFLISASKDGKPMLRNGDT--GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred cCCCcceeEEeccCC--CCCceEEEEeccCCCchhccCCC--CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 499999999999776 58999999999999988888777 67799999999999999998875 67899999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
|. -++..++++. |..-|.+++|+ .|.++|++|+.+..+++||++....
T Consensus 87 ~a-~tgdelhsf~-hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~A----------------------------- 134 (334)
T KOG0278|consen 87 DA-VTGDELHSFE-HKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKA----------------------------- 134 (334)
T ss_pred hh-hhhhhhhhhh-hhheeeeEEec-ccchhhhccchHHHhhhhhccCCCC-----------------------------
Confidence 95 5677788875 88999999999 8999999999999999999987532
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
.+....+|.+.|..+.|....+.|++...|++||+||.++++.+..+. ...+|+++.++++
T Consensus 135 ------------------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~d 195 (334)
T KOG0278|consen 135 ------------------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQD 195 (334)
T ss_pred ------------------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccC
Confidence 234478899999999999988899999999999999999999999987 5788999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe--ecCCCeEEE
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC--TGEHPILQL 348 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~V~~l 348 (764)
|++|.++ ..+.|++||..+...++.++.. ..|.+...+|+...+++|+.|+.++.||..+++.+..+ .|.++|.|+
T Consensus 196 G~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV 273 (334)
T KOG0278|consen 196 GRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV 273 (334)
T ss_pred CCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEE
Confidence 9877665 5678999999999988888743 46888999999999999999999999999999988774 478899999
Q ss_pred EeeCCc--eEEEeCCCcEEEeeCCCCCCc
Q 046871 349 ALHDDN--IWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd~~~~~~~ 375 (764)
.|+|+| .++|+.||+|++|.+..++..
T Consensus 274 rFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 274 RFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999 677889999999998776544
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.1e-30 Score=272.93 Aligned_cols=325 Identities=23% Similarity=0.439 Sum_probs=254.1
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
..|.+|.++|..++| +|++.++++||.|-.|++|+..+ .+|+.++.+|-+-|..+.|++.- .++|+|.|.+|
T Consensus 45 ~rFdeHdGpVRgv~F-----H~~qplFVSGGDDykIkVWnYk~--rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 45 DRFDEHDGPVRGVDF-----HPTQPLFVSGGDDYKIKVWNYKT--RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred hhhhccCCccceeee-----cCCCCeEEecCCccEEEEEeccc--ceehhhhccccceeEEeeccCCCceEEEccCCCeE
Confidence 456789999999999 68899999999999999999998 88999999999999999999885 99999999999
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
+||++ ..++++..+.+|..+|.|.+|+ +..+++++++.|.+|++||+...+.........++.. .+..
T Consensus 118 rIWNw-qsr~~iavltGHnHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~-~~~~--------- 185 (1202)
T KOG0292|consen 118 RIWNW-QSRKCIAVLTGHNHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQM-RGQQ--------- 185 (1202)
T ss_pred EEEec-cCCceEEEEecCceEEEeeccC-CccceEEEecccceEEEEeecchhccCCCCCCchhhh-hccc---------
Confidence 99998 5699999999999999999999 6789999999999999999987544333222111100 0000
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeccCCcCeEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSL 265 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l 265 (764)
....++ ..........+.+|...|.-++|+|.-.+|++|+.|..|++|.+..-+ .+-+..+|.++|.++
T Consensus 186 --------~~~dLf-g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 186 --------GNSDLF-GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV 256 (1202)
T ss_pred --------cchhhc-CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE
Confidence 000000 000112335688999999999999999999999999999999986544 245678999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCe
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI 345 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V 345 (764)
.|+|....+++.|.|++|++||+...+.+++|+...+..|.++.+|..++++.|- |+-+.+|.++... |
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleREr---------p- 325 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERER---------P- 325 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccC---------c-
Confidence 9999999999999999999999999999999998889999999999998777664 5556666664322 2
Q ss_pred EEEEeeCCceEEEeCCCcEEEeeCCCCCCceeee--cCC--cceecccccccc
Q 046871 346 LQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQ--RGG--SFIAGNLSFSRA 394 (764)
Q Consensus 346 ~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~--~~~--~~~~~~~~~s~~ 394 (764)
+.+++.++++-.- |..|+-+|+.+.+-....+ ... -....+++|+|.
T Consensus 326 -a~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpa 376 (1202)
T KOG0292|consen 326 -AYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPA 376 (1202)
T ss_pred -eEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccc
Confidence 3445666654444 8899999998855443332 221 123345666663
No 53
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=248.43 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=251.3
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEe
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwd 155 (764)
+.+|..|++.|.+++.+|+. .+++|+.|..-.+|++ .++.....+.+|.+.|+|+.|+ .++.+||+|+.+|.|++|+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~Fs-hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFS-HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEc-cCceEEEecCCCccEEEEE
Confidence 67899999999999999975 8899999999999997 5677888999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE
Q 046871 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235 (764)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 235 (764)
..++... ..+...-..|.-+.|+|.+.+|++|
T Consensus 135 ~stg~~~------------------------------------------------~~~~~e~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 135 VSTGGEQ------------------------------------------------WKLDQEVEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred cccCceE------------------------------------------------EEeecccCceEEEEecccccEEEee
Confidence 9875221 2222345668889999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec-CceEEEEEcCCCC
Q 046871 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-DSVWALASTPTFS 314 (764)
Q Consensus 236 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-~~V~~l~~spd~~ 314 (764)
+.||.+.+|.+.++.....+.||+.++++=.|.|||+.++++..||+|++||+.++.++..+.... ....++.++..+.
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~ 246 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS 246 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc
Confidence 999999999999988889999999999999999999999999999999999999999998887433 3567888999999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEeec---------CCCeEEEEeeCCc-----eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 315 HVYSGGRDLSLYLTDLATRESLLLCTG---------EHPILQLALHDDN-----IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~---------~~~V~~l~~spd~-----l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.+++|+.++.+++-+..+|+.+..... ...+.++.+.|.. .++|+-||+|.|||+....+...
T Consensus 247 ~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~--- 323 (399)
T KOG0296|consen 247 TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI--- 323 (399)
T ss_pred eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---
Confidence 999999999999999999887765542 3345555555544 67788899999999976544332
Q ss_pred CCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCC
Q 046871 381 GGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGK 458 (764)
Q Consensus 381 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~ 458 (764)
+++..+|+++.|.+ ..+|+|+..+|.|+.||.++|+++.+|..
T Consensus 324 ----------------------------------c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 324 ----------------------------------CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ----------------------------------ccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 33456789999999 78999999999999999999999998844
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=268.75 Aligned_cols=290 Identities=18% Similarity=0.318 Sum_probs=249.7
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
||+..|.++++ |.+...+++|+ .+.|+||+..+ .++++++... .+.+..|.|.+ ++++|...|.+.++|
T Consensus 371 GHR~dVRsl~v-----S~d~~~~~Sga-~~SikiWn~~t--~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 371 GHRSDVRSLCV-----SSDSILLASGA-GESIKIWNRDT--LKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred cchhheeEEEe-----ecCceeeeecC-CCcEEEEEccC--cceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEE
Confidence 99999999999 67777777765 47999999998 8899998754 78889999876 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+. ....+.+++.|.+.|+.++.+ +++..+++|+.|.+|++||..-......
T Consensus 441 la-S~~l~Eti~AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~g--------------------------- 491 (888)
T KOG0306|consen 441 LA-SASLVETIRAHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPG--------------------------- 491 (888)
T ss_pred ee-hhhhhhhhhccccceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCc---------------------------
Confidence 84 467788888999999999999 7899999999999999999863211000
Q ss_pred cCCCCc-ccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 192 IGSSNS-ISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 192 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
.... +.+ .......-...|.|+.+||||++|+++--|.+|++|-+++.+....+-||.-+|.|+.++||
T Consensus 492 --t~~k~lsl--------~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 492 --TQKKVLSL--------KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred --ccceeeee--------ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence 0000 000 00011223677999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEE
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLA 349 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~ 349 (764)
++.++|||.|.+|++|-+.-|.|-+.+-+|.++|.++.|.|+...++++|.|+.|+-||-...+.++.+. |...|+|++
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence 9999999999999999999999999999999999999999999999999999999999999888887776 677899999
Q ss_pred eeCCc--eEEEeCCCcEEEeeCCC
Q 046871 350 LHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 350 ~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
.+|+| +++++.|.+|++|....
T Consensus 642 v~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 642 VSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EcCCCCeEEeccCCceeEeeeccC
Confidence 99999 88888899999997654
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=278.65 Aligned_cols=279 Identities=32% Similarity=0.520 Sum_probs=250.4
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCcccee-ecccccceeEEEEeC-CCeEEEEeCCCcEEEec
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSAT-FESHVDWVNDAVLVG-DNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~-l~~h~~~V~~v~~s~-d~~l~s~s~Dg~V~vWd 111 (764)
|...|.|..|. ..++++++.|++|++||..+ +..+.. +.+|.+.|.++++.. +++|++|+.|.+++|||
T Consensus 207 ~~~~~~~~q~~-------~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH-------DGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred Ccchhhhheee-------cCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 67789999982 67899999999999999998 666666 999999999999986 45999999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ ..+.|.+++.+|.+.|.++... ...+++|+.|.+|++|++.++
T Consensus 278 ~-~sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~-------------------------------- 321 (537)
T KOG0274|consen 278 C-STGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNG-------------------------------- 321 (537)
T ss_pred c-CCCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCc--------------------------------
Confidence 6 7799999999999999999876 678889999999999999863
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
..+..+.+|.++|.++.++ +.++++|+.|+.|++||+.+++++..+.+|...|.++.+...
T Consensus 322 ----------------~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~- 382 (537)
T KOG0274|consen 322 ----------------ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE- 382 (537)
T ss_pred ----------------ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-
Confidence 3345566799999999998 889999999999999999999999999999999999988765
Q ss_pred CEEEEEeCCCcEEEEeCCCC-eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC--CCeEEE
Q 046871 272 RYCLSGSSDSMIRLWDLGQQ-RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE--HPILQL 348 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~-~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--~~V~~l 348 (764)
..+++|+.|++|++||+++. +|+.++.+|.+-+..+.+ .+++|++++.|++|++||..+++++..+... ..|..+
T Consensus 383 ~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL 460 (537)
T ss_pred ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEe
Confidence 89999999999999999999 999999999999877766 4679999999999999999999999988873 788888
Q ss_pred EeeCCceEEEeCCCcEEEeeCCCCCCceee
Q 046871 349 ALHDDNIWVATTDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 349 ~~spd~l~~~s~dg~I~iwd~~~~~~~~~~ 378 (764)
++....+++++.|+++++||+.++++.+.+
T Consensus 461 ~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 461 ALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 888555999999999999999999887765
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-30 Score=275.83 Aligned_cols=249 Identities=21% Similarity=0.329 Sum_probs=209.3
Q ss_pred CCCC-CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC-----------------------------------
Q 046871 29 SDDT-KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD----------------------------------- 72 (764)
Q Consensus 29 ~~~~-gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~----------------------------------- 72 (764)
.... .|.++|.|+.| |+||+|||+||.||.|+||.+...
T Consensus 260 Qe~~~ah~gaIw~mKF-----S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKF-----SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eccccccCCcEEEEEe-----CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 3444 89999999999 899999999999999999987540
Q ss_pred -----------------------CCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCce
Q 046871 73 -----------------------VGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYV 129 (764)
Q Consensus 73 -----------------------~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V 129 (764)
..+++..|.||.+.|.++.|+.+++|+++|.|.||++|++ ....|+..|. |.+.|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~-~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHP-GRKECLKVFS-HNDFV 412 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecC-CCcceeeEEe-cCCee
Confidence 0134556789999999999999999999999999999998 4578898886 99999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcc
Q 046871 130 TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV 209 (764)
Q Consensus 130 ~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 209 (764)
+|++|+|-|.++|++|+.|+.|+||++.....
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V------------------------------------------------ 444 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKV------------------------------------------------ 444 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCee------------------------------------------------
Confidence 99999999999999999999999999976311
Q ss_pred ceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec---------cCCcCeEEEEEcCC-CCEEEEEeC
Q 046871 210 PIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR---------GHTDNIRSLLLDST-GRYCLSGSS 279 (764)
Q Consensus 210 ~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~spd-g~~l~sgs~ 279 (764)
.....-..-|++++|.|+|+..++|+.+|.+++|++...+....+. .|. .|+.+.|.|. ...+++.+.
T Consensus 445 -v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 445 -VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred -EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecC
Confidence 1122335779999999999999999999999999998877655442 123 7999999974 346888889
Q ss_pred CCcEEEEeCCCCeeeEEEeeecC--ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 280 DSMIRLWDLGQQRCIHSYAVHTD--SVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 280 Dg~I~iwdl~~~~~~~~l~~h~~--~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
|..|||||+++...+..|+++.. .-....|+.||++|++++.|..|++|++....
T Consensus 523 DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 523 DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 99999999999888888886543 34566788899999999999999999985443
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=8.3e-31 Score=265.17 Aligned_cols=287 Identities=19% Similarity=0.264 Sum_probs=239.0
Q ss_pred ccceeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 75 SCSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
+.+.++.+|+..|+++.|.|- + +|++++.|+.|+||++...+.+++++.+|..+|..++|+ ..+..|++++.|+.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s-~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN-NCGTSFLSASFDRFLK 283 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc-ccCCeeeeeecceeee
Confidence 457888999999999999994 5 789999999999999977799999999999999999999 8899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NL 231 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~ 231 (764)
+||.+++..... ......++|+.|+|++ +.
T Consensus 284 lwDtETG~~~~~-------------------------------------------------f~~~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 284 LWDTETGQVLSR-------------------------------------------------FHLDKVPTCVKFHPDNQNI 314 (503)
T ss_pred eeccccceEEEE-------------------------------------------------EecCCCceeeecCCCCCcE
Confidence 999998643321 1224567899999988 88
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee-ecCceEEEEEc
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV-HTDSVWALAST 310 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~-h~~~V~~l~~s 310 (764)
+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.+.|++++||+.+..-.++.... +.-...++..+
T Consensus 315 fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred EEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999988766655432 22345688999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCeEEE---Eee---cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCC
Q 046871 311 PTFSHVYSGGRDLSLYLTDLATRESLL---LCT---GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 311 pd~~~l~sgs~Dg~I~iwd~~~~~~~~---~~~---~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
|++.++++-+.|+.|.++.+...-.+. .+. ..+--..+.||||| |++|..||.+.+||.++-+....++.|.
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 999999999999999999976443322 111 13446789999999 8999999999999999988887777654
Q ss_pred cceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 383 SFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
+..+ .+.|.|. .-..|||++.||.|++||
T Consensus 475 ~~ci-~v~wHP~----------------------------------e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCI-GVDWHPV----------------------------------EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceE-EEEecCC----------------------------------CcceeEecccCceeEecC
Confidence 3332 3333330 235799999999999996
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.8e-29 Score=233.12 Aligned_cols=276 Identities=19% Similarity=0.294 Sum_probs=240.1
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCc
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTT 106 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~ 106 (764)
....+|.+.|.+++| +.+|..|++|+.|+++.+|+++...........+|.+.|-.++|.|.. .|++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~w-----n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAW-----NCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEE-----cccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 345699999999999 689999999999999999999885444455668999999999999763 8999999999
Q ss_pred EEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 107 LKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 107 V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
|++||+ ..+++...+....+.+ -+.|+ |++.+++.++.|..|.+.|.++.....
T Consensus 89 ir~wd~-r~~k~~~~i~~~~eni-~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~~----------------------- 142 (313)
T KOG1407|consen 89 IRIWDI-RSGKCTARIETKGENI-NITWS-PDGEYIAVGNKDDRITFIDARTYKIVN----------------------- 142 (313)
T ss_pred EEEEEe-ccCcEEEEeeccCcce-EEEEc-CCCCEEEEecCcccEEEEEecccceee-----------------------
Confidence 999998 4577777766555554 56788 789999999999999999998642211
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLL 266 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 266 (764)
.......+..++|+-++++++.....|.|.|.....-+++..++.|.....||.
T Consensus 143 --------------------------~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~ 196 (313)
T KOG1407|consen 143 --------------------------EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE 196 (313)
T ss_pred --------------------------hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEE
Confidence 112244567888988888888888889999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeE
Q 046871 267 LDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPIL 346 (764)
Q Consensus 267 ~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~ 346 (764)
|+|+|++|++|+.|..+.+||+...-|++.+..+.-+|..|.|+.||++|++|+.|..|-|-++++|..+..+++.++-.
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~ 276 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTF 276 (313)
T ss_pred ECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCc--eEEEeCC
Q 046871 347 QLALHDDN--IWVATTD 361 (764)
Q Consensus 347 ~l~~spd~--l~~~s~d 361 (764)
.++|+|.. |+.++.|
T Consensus 277 tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 277 TVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEecCCCceeeEEecC
Confidence 99999999 5555543
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-29 Score=246.70 Aligned_cols=280 Identities=20% Similarity=0.328 Sum_probs=232.3
Q ss_pred ccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCC--CcEEEEEeCCCeEEEEeCCCC
Q 046871 82 SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN--SNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~--~~~lasg~~dg~I~iwdl~~~ 159 (764)
.|.+||.++... .+.++++++||++++||. .|++..++.+|.++|..+++.-.+ ...|++++.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~-~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA-SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc-CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 489999998887 468999999999999995 689999999999999988886332 346999999999999999865
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
.... .......+|...|-++...++|..+++|+.|.
T Consensus 180 ~~~~--------------------------------------------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 180 ENKV--------------------------------------------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred hhhh--------------------------------------------hHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 3221 11122459999999999999999999999999
Q ss_pred eEEEEeCC-------------------------CCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeee
Q 046871 240 VVRVWDPR-------------------------TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294 (764)
Q Consensus 240 ~I~iwd~~-------------------------~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~ 294 (764)
.|.||+.. ++.++..+.||..+|.++.|++ ...+++++.|.+|+.||+.++.++
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~ 294 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK 294 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence 99999921 1235667889999999999988 678999999999999999999999
Q ss_pred EEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe----EEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEe
Q 046871 295 HSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE----SLLLCTGEHPILQLALHDDN---IWVATTDSSVHRW 367 (764)
Q Consensus 295 ~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iw 367 (764)
.++.. ...+.++..+|..++|++|+.|..|++||.+++. ......|...|.++.|+|.. +++++.|+++++|
T Consensus 295 ~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 295 STLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 88874 5578999999999999999999999999998764 23345578899999999988 8999999999999
Q ss_pred eCCCCC-CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 368 PAEGRN-PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 368 d~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
|+++.. ++..+.+|...+. ++.|. ++..+++|+.|.+|+++.
T Consensus 374 DvRS~k~plydI~~h~DKvl------------------------------------~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAGHNDKVL------------------------------------SVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EeccCCCcceeeccCCceEE------------------------------------EEecc-CCceEEeccCcceEEEec
Confidence 999876 6666666544332 22222 677999999999999985
Q ss_pred c
Q 046871 447 I 447 (764)
Q Consensus 447 i 447 (764)
-
T Consensus 417 ~ 417 (423)
T KOG0313|consen 417 G 417 (423)
T ss_pred c
Confidence 3
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=231.98 Aligned_cols=263 Identities=21% Similarity=0.303 Sum_probs=223.8
Q ss_pred cceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 76 CSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
....+..|.++|..+.|+-+| +.++|+.|.+|++|+. ..+.+++++.+|...|..++.+ .|+..|++|+.|+.|.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s-~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALS-SDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecc-cccceeeeecCCCceeeecccc-ccccccccCCCCceEEEE
Confidence 466788999999999999997 8999999999999997 5699999999999999999999 889999999999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
|++++ +....+.+|.+.|..++|+.+...+++
T Consensus 87 DV~TG------------------------------------------------kv~Rr~rgH~aqVNtV~fNeesSVv~S 118 (307)
T KOG0316|consen 87 DVNTG------------------------------------------------KVDRRFRGHLAQVNTVRFNEESSVVAS 118 (307)
T ss_pred EcccC------------------------------------------------eeeeecccccceeeEEEecCcceEEEe
Confidence 99985 344558899999999999999999999
Q ss_pred EeCCCeEEEEeCCCC--ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 235 GGTEKVVRVWDPRTG--SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 235 gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
|+.|..+++||.++. ++++.+....+.|.++.++ +..|++||.||++|.||++.|+...-+- ..+|+++.|++|
T Consensus 119 gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d 194 (307)
T KOG0316|consen 119 GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKD 194 (307)
T ss_pred ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCC
Confidence 999999999999865 6788888888999999887 6789999999999999999998766554 458999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEeecC-CCe--EEEEeeCC-c-eEEEeCCCcEEEeeCCCCCCceeeecCCcceec
Q 046871 313 FSHVYSGGRDLSLYLTDLATRESLLLCTGE-HPI--LQLALHDD-N-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAG 387 (764)
Q Consensus 313 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~V--~~l~~spd-~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 387 (764)
++..+.++.|+++++.|-.+|+.+..+.+. ..- ..++++.. . ++.|++||.|++||+.....+..+..+....+.
T Consensus 195 ~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~ 274 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVT 274 (307)
T ss_pred CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEE
Confidence 999999999999999999999998877642 221 22333333 3 899999999999999988777666654444343
Q ss_pred ccccc
Q 046871 388 NLSFS 392 (764)
Q Consensus 388 ~~~~s 392 (764)
++++.
T Consensus 275 dl~~h 279 (307)
T KOG0316|consen 275 DLSCH 279 (307)
T ss_pred eeecc
Confidence 44333
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=247.94 Aligned_cols=289 Identities=19% Similarity=0.246 Sum_probs=235.4
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC--eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG--TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEV 151 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~--~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I 151 (764)
+..+.+..|++.|+-+.|+++| +|++++.|.+..+|.+..+. +..+++.+|..+|..+.|+ ||.++|++|+.|..+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS-PDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS-PDDRYLLACGFDEVL 293 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC-CCCCeEEecCchHhe
Confidence 3466788999999999999998 99999999999999875443 3567889999999999999 788999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 231 (764)
.+||..++...... ..++..++.+++|.|||..
T Consensus 294 ~lwDv~tgd~~~~y-----------------------------------------------~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLY-----------------------------------------------PSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred eeccCCcchhhhhc-----------------------------------------------ccCcCCCcceeEEccCCce
Confidence 99999986332211 2235678999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeccCC-cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEc
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST 310 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~s 310 (764)
+++|+.|+.+..||+. |..+...++-. ..|.++++++||+++++.+.|..|++++..+........ -..+|+++..+
T Consensus 327 ~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS 404 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSIS 404 (519)
T ss_pred eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEc
Confidence 9999999999999985 55555555543 368999999999999999999999999998766655444 45689999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCeEEEEeec---CCCeEEEEeeCC--c-eEEEeCCCcEEEeeCCCCCCceeeecCCcc
Q 046871 311 PTFSHVYSGGRDLSLYLTDLATRESLLLCTG---EHPILQLALHDD--N-IWVATTDSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 311 pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~~l~~spd--~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
.+++++++.-.+..+++||++....+..+.+ ..-+-.-||-.. . +++|++|+.|+||+..+++++.++.+|...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 9999999999999999999997766655543 222333444332 3 899999999999999999999999887644
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
+++++++|. |..++|+++.||+||+|-..
T Consensus 485 -vNcVswNP~----------------------------------~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 485 -VNCVSWNPA----------------------------------DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred -eeEEecCCC----------------------------------CHHHhhccCCCCeEEEecCC
Confidence 446666651 55789999999999999765
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.2e-30 Score=249.74 Aligned_cols=281 Identities=20% Similarity=0.315 Sum_probs=234.0
Q ss_pred CCCCCCeeEEEeecccccCCC-cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGV-DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~-~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vW 110 (764)
.||+.+|.||+-. |.. ..+++|+.||.|+|||+.+ ..+..+|+.|.+.|..|++.. +.+++++.|.+|+.|
T Consensus 63 ~gHrdGV~~lakh-----p~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 63 DGHRDGVSCLAKH-----PNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQW 134 (433)
T ss_pred cccccccchhhcC-----cchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc-cceEEecCCcceeee
Confidence 6999999999984 544 6899999999999999998 788999999999999999987 679999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
.+. +...+++.+ ...+..+.-+ .....++|+|.+ |.|||.....
T Consensus 135 k~~--~~p~~tilg-~s~~~gIdh~-~~~~~FaTcGe~--i~IWD~~R~~------------------------------ 178 (433)
T KOG0268|consen 135 KID--GPPLHTILG-KSVYLGIDHH-RKNSVFATCGEQ--IDIWDEQRDN------------------------------ 178 (433)
T ss_pred ecc--CCcceeeec-cccccccccc-cccccccccCce--eeecccccCC------------------------------
Confidence 973 446666643 3445667766 667889999865 9999997532
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
.+..+.-..+.|.++.|+| ...+|++++.|+.|.+||+++++++.++. ....-+.|+|+|
T Consensus 179 ------------------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP 239 (433)
T KOG0268|consen 179 ------------------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP 239 (433)
T ss_pred ------------------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCc
Confidence 1223444567899999999 45678888899999999999998887765 344567899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec--CCCeE
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG--EHPIL 346 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~ 346 (764)
.+-.+++|+.|..++.||++. .+++..+.+|.+.|.++.|+|.|+-|++||.|.+|+||....+....++.. -..|.
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF 319 (433)
T ss_pred cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence 888899999999999999986 467888899999999999999999999999999999999988766554432 45699
Q ss_pred EEEeeCCc--eEEEeCCCcEEEeeCCCCCCc
Q 046871 347 QLALHDDN--IWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 347 ~l~~spd~--l~~~s~dg~I~iwd~~~~~~~ 375 (764)
|+.|+-|. +++|+.|+.|++|.....+..
T Consensus 320 ~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999998 999999999999988754443
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2e-29 Score=242.09 Aligned_cols=279 Identities=18% Similarity=0.343 Sum_probs=234.4
Q ss_pred ccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeec--------cccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 82 SHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTL--------RQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l--------~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
+..+.+.|..|+||+ +|++++.||-|.|||. .+++..+.+ --+.++|.|+.|+ .|..++|+|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEE
Confidence 345678899999997 9999999999999997 445543333 3477899999999 8999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+|.+.++.+..+ .-.+|...|+|+.|+.|+..+
T Consensus 289 vWri~tG~ClRr-----------------------------------------------FdrAHtkGvt~l~FSrD~Sqi 321 (508)
T KOG0275|consen 289 VWRIETGQCLRR-----------------------------------------------FDRAHTKGVTCLSFSRDNSQI 321 (508)
T ss_pred EEEEecchHHHH-----------------------------------------------hhhhhccCeeEEEEccCcchh
Confidence 999998643322 134789999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee--cCceEEEEEc
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH--TDSVWALAST 310 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h--~~~V~~l~~s 310 (764)
++++.|.++|+.-+++|+++..++||++.|+...|.+||.++++++.||+|++|+..+.+|+.+|+.. .-+|+++..-
T Consensus 322 LS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 322 LSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred hcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999843 3468888877
Q ss_pred CC-CCEEEEecCCCcEEEEeCCCCeEEEEeec----CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCc
Q 046871 311 PT-FSHVYSGGRDLSLYLTDLATRESLLLCTG----EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGS 383 (764)
Q Consensus 311 pd-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~----~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 383 (764)
|. -..++.+.+.++|+|-++. |+.+..+.. .+...+.+.+|.| +++.++|+.++.|.+.++...+.+..+..
T Consensus 402 PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred CCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 64 4678899999999999986 555555542 4556778899999 99999999999999999998888765443
Q ss_pred ceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 384 FIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 384 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
.+ +.++-.|..+.|++-++||.+++|.
T Consensus 481 dv------------------------------------IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DV------------------------------------IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cc------------------------------------cccccCcccchhhhhcccchhhhcC
Confidence 32 2333345678899999999999994
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=268.72 Aligned_cols=281 Identities=28% Similarity=0.457 Sum_probs=243.5
Q ss_pred cccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeee-ccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 83 HVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRT-LRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 83 h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~-l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
|...+.+..|. ++++++++.|++|++|+. .++..+.. +.+|.+.|+++++. ..++++++|+.|.++++||+.+
T Consensus 207 ~~~~~~~~q~~-~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~s--- 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DGFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCST--- 280 (537)
T ss_pred Ccchhhhheee-cCeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCC---
Confidence 56778888888 678999999999999997 45666666 99999999999998 6899999999999999999887
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVV 241 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I 241 (764)
+.....+.+|.+.|.++... ...+++|+.|.+|
T Consensus 281 ---------------------------------------------g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 281 ---------------------------------------------GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTV 313 (537)
T ss_pred ---------------------------------------------CcEEEEecCCCceEEEEEcc--CceEeeccCCceE
Confidence 34556788999999999876 5578889999999
Q ss_pred EEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC
Q 046871 242 RVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR 321 (764)
Q Consensus 242 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~ 321 (764)
++|++.++..+..+.+|.++|+++.++ +.++++|+.|++|++||+.+++|++++.+|...|.++.+.+. .++++|+.
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred EEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee
Confidence 999999999999999999999999998 889999999999999999999999999999999999988765 89999999
Q ss_pred CCcEEEEeCCCC-eEEEEeec-CCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccC
Q 046871 322 DLSLYLTDLATR-ESLLLCTG-EHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLE 399 (764)
Q Consensus 322 Dg~I~iwd~~~~-~~~~~~~~-~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 399 (764)
|+.|++||+.+. +++..+.+ ..-+..+.+....|++++.|+.|++||.+++++.+.+...+
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~----------------- 453 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRH----------------- 453 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCC-----------------
Confidence 999999999999 88887775 44556666666669999999999999999999988877531
Q ss_pred CCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 400 GSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 400 ~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
..++..+++. ...+++++.||.+++||+.+|++++++
T Consensus 454 ------------------~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 454 ------------------VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ------------------cccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 1112222222 367899999999999999999999877
No 65
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=9.2e-28 Score=257.21 Aligned_cols=344 Identities=16% Similarity=0.240 Sum_probs=274.0
Q ss_pred eeEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--e
Q 046871 20 KRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--T 97 (764)
Q Consensus 20 ~~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~ 97 (764)
.++.|.++ +|.+.|+++.- +|--+.+|.|..+|+|.|+++.. .+.+.+|+.-.+.|+.++|..|| .
T Consensus 192 ~K~v~~f~-----~~~s~IT~ieq-----sPaLDVVaiG~~~G~ViifNlK~--dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 192 GKVVYTFQ-----EFFSRITAIEQ-----SPALDVVAIGLENGTVIIFNLKF--DKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred CcEEEEec-----ccccceeEecc-----CCcceEEEEeccCceEEEEEccc--CcEEEEEEccccceeEEEeccCCCee
Confidence 46677766 88899999998 67789999999999999999998 67788888667999999999887 7
Q ss_pred EEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 98 l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
+++++..|.+.+||++...........|.+.|....|. ++...+++++.|+.+++|=.+++.-.
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~--------------- 323 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGV--------------- 323 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCc---------------
Confidence 88999999999999854333333445898999999999 78899999999999998876643111
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc-CCCCEEEEEeCCC-----------------
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN-DSGNLLVSGGTEK----------------- 239 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s-p~g~~l~sgs~dg----------------- 239 (764)
...++...+|..+..++.|. .+|..+.+++.|+
T Consensus 324 -----------------------------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~ 374 (910)
T KOG1539|consen 324 -----------------------------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG 374 (910)
T ss_pred -----------------------------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence 01112223344444444443 2333444444444
Q ss_pred ------------------------------------------------eEEEEeCCCCce-eEEec-----cCCcCeEEE
Q 046871 240 ------------------------------------------------VVRVWDPRTGSK-TIKLR-----GHTDNIRSL 265 (764)
Q Consensus 240 ------------------------------------------------~I~iwd~~~~~~-~~~l~-----~h~~~V~~l 265 (764)
.++.|+.++... .+.+. .....++++
T Consensus 375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av 454 (910)
T KOG1539|consen 375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV 454 (910)
T ss_pred ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence 455555544332 12222 122578999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE---eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY---AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE 342 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l---~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 342 (764)
+.++.|++.+.|++.|+|-+|++++|.....| ..|.++|+.++.+.-++.+++++.+|.+++||+.+...+..+...
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~ 534 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG 534 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence 99999999999999999999999999999988 489999999999999999999999999999999999988888889
Q ss_pred CCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC
Q 046871 343 HPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG 420 (764)
Q Consensus 343 ~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 420 (764)
.++.++..+... ++++..|-.|+++|+.+.+.++.+.+|. ..
T Consensus 535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~------------------------------------nr 578 (910)
T KOG1539|consen 535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG------------------------------------NR 578 (910)
T ss_pred CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc------------------------------------cc
Confidence 999999998877 8888999999999999988877776543 34
Q ss_pred ceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 421 IVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 421 i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
|+++.|||||++|++++.|++|++||+.+|.+|..+
T Consensus 579 itd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 579 ITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred eeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 678899999999999999999999999999999877
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.2e-29 Score=238.22 Aligned_cols=280 Identities=20% Similarity=0.331 Sum_probs=239.7
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCc------cceeecccccceeEEEEeCCC-eEEEEeCCC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS------CSATFESHVDWVNDAVLVGDN-TLVSCSSDT 105 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~------~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg 105 (764)
|..+-+.|..| ||||+||++|+.||.|.+||..++..+ ....|--|.+.|.|+.|+.|. .+++|+.||
T Consensus 211 g~KSh~EcA~F-----SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARF-----SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheee-----CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 56677888888 899999999999999999999874321 122344578999999999996 899999999
Q ss_pred cEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 106 TLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
.|+||.+ .++.|++.+. .|...|+|+.|+ .|+..+++++.|.++++.-+..+
T Consensus 286 kIKvWri-~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSG------------------------- 338 (508)
T KOG0275|consen 286 KIKVWRI-ETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSG------------------------- 338 (508)
T ss_pred cEEEEEE-ecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccc-------------------------
Confidence 9999998 6699999886 899999999999 88889999999999999988764
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc--CCcCe
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG--HTDNI 262 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V 262 (764)
+....+.+|.+-|+...|.++|..+++++.||+|++|+.++.+++.+++. ...+|
T Consensus 339 -----------------------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 339 -----------------------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPV 395 (508)
T ss_pred -----------------------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccc
Confidence 44556899999999999999999999999999999999999999988874 34478
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeee---cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE
Q 046871 263 RSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH---TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 263 ~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h---~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~ 338 (764)
.++..-| +-..+++|...++|.|-++ .|+.+++|... .+...+.+.+|.|.++++.+.|+.++.+...+|.....
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 8887777 4467899999999999998 57788887632 24466777899999999999999999999999988777
Q ss_pred ee-cCCCeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 339 CT-GEHPILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 339 ~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
+. |+..+-.++-+|.. +++-++||.+++|.
T Consensus 475 l~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 475 LPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecccccccccccCcccchhhhhcccchhhhcC
Confidence 66 56778889999987 88889999999995
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.4e-29 Score=231.07 Aligned_cols=291 Identities=22% Similarity=0.255 Sum_probs=249.5
Q ss_pred ceeecccccceeEEEEeC---CC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 77 SATFESHVDWVNDAVLVG---DN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~---d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
..+..+|+.+|.+++|+| +| .|++++.|+.-.+-+ ..++.-+-++.+|.+.|+..... .+....|+++.|-+-+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~-g~tgdwigtfeghkgavw~~~l~-~na~~aasaaadftak 84 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN-GDTGDWIGTFEGHKGAVWSATLN-KNATRAASAAADFTAK 84 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhcc-CCCCCcEEeeeccCcceeeeecC-chhhhhhhhcccchhh
Confidence 456789999999999984 67 789999999877766 35678899999999999999998 7888899999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||.-++... . ...|+.-|.+++|+.|.++|
T Consensus 85 vw~a~tgdel------------------------------------------------h-sf~hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 85 VWDAVTGDEL------------------------------------------------H-SFEHKHIVKAVAFSQDSNYL 115 (334)
T ss_pred hhhhhhhhhh------------------------------------------------h-hhhhhheeeeEEecccchhh
Confidence 9998764211 1 34578889999999999999
Q ss_pred EEEeCCCeEEEEeCCCCc-eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 233 VSGGTEKVVRVWDPRTGS-KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
++|+.++.+||||++..+ +...+.+|++.|+.+.|....+.|++++.|++||+||.+++..++++. ...+|+++..++
T Consensus 116 ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~ 194 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ 194 (334)
T ss_pred hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc
Confidence 999999999999997664 567789999999999999989999999999999999999999999997 567899999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceee-ecCCcceecc
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVF-QRGGSFIAGN 388 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~ 388 (764)
+|++|.++ ..+.|.+||..+...+..+.....|.+..++|+. +++|+.|..++.||..+++.+..+ .+
T Consensus 195 dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-------- 265 (334)
T KOG0278|consen 195 DGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-------- 265 (334)
T ss_pred CCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccC--------
Confidence 99876554 5678999999999999999989999999999998 777888999999999998766553 11
Q ss_pred ccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 389 LSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 389 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
+..+|.++.|+|||...++|++||+|+||.+..++.-...
T Consensus 266 ----------------------------h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~ 305 (334)
T KOG0278|consen 266 ----------------------------HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLW 305 (334)
T ss_pred ----------------------------CCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhc
Confidence 1334778899999999999999999999999877655433
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.4e-28 Score=247.24 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=232.5
Q ss_pred eeEEEEEeCCCC---CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC--Cccceeec-ccccceeEEEEe
Q 046871 20 KRLTYVLNNSDD---TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV--GSCSATFE-SHVDWVNDAVLV 93 (764)
Q Consensus 20 ~~~~~~~~~~~~---~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~--~~~~~~l~-~h~~~V~~v~~s 93 (764)
..+.+.++..+. .+|+..|+++++ .|.|.+|++||.|.+|++||+.... .+..+.+. .....|+++.|+
T Consensus 149 ~~~~~~IP~shEi~l~hgtk~Vsal~~-----Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 149 ESIIKLIPGSHEIQLKHGTKIVSALAV-----DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS 223 (641)
T ss_pred hchhhcCCccceEeccCCceEEEEeee-----cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec
Confidence 344555555443 689999999999 6889999999999999999997522 11122222 345679999999
Q ss_pred CCC-eEEEEeCCCcEEEecCCCCCeee-------------eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 046871 94 GDN-TLVSCSSDTTLKTWNCSSDGTCI-------------RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 94 ~d~-~l~s~s~Dg~V~vWd~~~~~~~~-------------~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~ 159 (764)
+.+ .|++.+.....+|+|- ++..+ ..-++|...++|.+|+|.+.+.|++++.||++++||++..
T Consensus 224 ~Tg~~iLvvsg~aqakl~DR--dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDR--DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred CCCCeEEEEecCcceeEEcc--CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 986 7777777788999994 33222 2235799999999999989999999999999999999864
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
...... .......+..-+++.++|+++|.+||+|+.||
T Consensus 302 k~q~qV------------------------------------------ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 302 KSQLQV------------------------------------------IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hhheeE------------------------------------------EeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 211100 00011234456789999999999999999999
Q ss_pred eEEEEeCCCCce---eEEeccCCc--CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeeEEEeeec--CceEEEEEcC
Q 046871 240 VVRVWDPRTGSK---TIKLRGHTD--NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ-RCIHSYAVHT--DSVWALASTP 311 (764)
Q Consensus 240 ~I~iwd~~~~~~---~~~l~~h~~--~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~-~~~~~l~~h~--~~V~~l~~sp 311 (764)
.|.+|+...... ...-..|.. .|+||.||+||++|++-+.|+++++||+++. +++.+..+-. -+-+.++|+|
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 999999754422 223356777 8999999999999999999999999999874 4666555432 2356789999
Q ss_pred CCCEEEEecC------CCcEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 312 TFSHVYSGGR------DLSLYLTDLATRESLLLCTG-EHPILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 312 d~~~l~sgs~------Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
+.++|++|.. .|++++||..+-+.+..+.. ...|..+.|+|.- |++++.||++++|=-
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 9999999864 57899999999888877764 6678999999987 999999999998843
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.3e-29 Score=245.89 Aligned_cols=278 Identities=22% Similarity=0.306 Sum_probs=238.2
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.-|.+.|+.+.|. ++...|++|+.|..|++|++.......+.++.+..+.|+++.|.+++ .+++++.|+.+++|
T Consensus 172 d~h~gev~~v~~l-----~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 172 DAHEGEVHDVEFL-----RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hccccccceeEEc-----cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 3699999999994 66789999999999999999876566788999999999999999887 88999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
++ ...+...++.+|.+.|+++.|. .....+++|+.|.+|++||+....+....
T Consensus 247 nv-d~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~kt~------------------------- 299 (459)
T KOG0288|consen 247 NV-DSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSKTV------------------------- 299 (459)
T ss_pred ec-cchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhhhhheeccc-------------------------
Confidence 97 5688899999999999999998 55555999999999999999874322110
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
-..+.+..|+.+ ...+++|..|+.||+||.++..+......+. .|+++..+++
T Consensus 300 ------------------------l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~ 352 (459)
T KOG0288|consen 300 ------------------------LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD 352 (459)
T ss_pred ------------------------cccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC
Confidence 012334455554 5678899999999999999999999988765 9999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEEeeec----CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec---CC
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT----DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG---EH 343 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~----~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~ 343 (764)
|..|++++.|.++.+.|+++....+++.... ...+.+.|||++.|+++||.||.|+||++.++++...+.. +.
T Consensus 353 g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 9999999999999999999998888876422 2378899999999999999999999999999998877664 23
Q ss_pred CeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 344 PILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 344 ~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
.|++++|+|.| +++++.++.+.+|.
T Consensus 433 aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 433 AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceEEEEEcCCCchhhcccCCcceEecC
Confidence 69999999998 99999999999993
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=225.09 Aligned_cols=294 Identities=20% Similarity=0.271 Sum_probs=238.7
Q ss_pred eecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 046871 79 TFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157 (764)
Q Consensus 79 ~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~ 157 (764)
.+++|..+++.+.|+.+| +|++|+.|.+..||-- .+++.+-++.+|.+.|+|+... .+...+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEec-CCcceeeeccccceeEEEEcC
Confidence 468899999999999997 9999999999999984 5789999999999999999999 889999999999999999999
Q ss_pred CCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC
Q 046871 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT 237 (764)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~ 237 (764)
++++. . .-....+|..+.|+.+|++++....
T Consensus 83 tGk~l------------------------------------------------a-~~k~~~~Vk~~~F~~~gn~~l~~tD 113 (327)
T KOG0643|consen 83 TGKQL------------------------------------------------A-TWKTNSPVKRVDFSFGGNLILASTD 113 (327)
T ss_pred CCcEE------------------------------------------------E-EeecCCeeEEEeeccCCcEEEEEeh
Confidence 86332 1 1223678999999999998887654
Q ss_pred -----CCeEEEEeCC-------CCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeeEEEeeecCce
Q 046871 238 -----EKVVRVWDPR-------TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ-RCIHSYAVHTDSV 304 (764)
Q Consensus 238 -----dg~I~iwd~~-------~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~-~~~~~l~~h~~~V 304 (764)
.+.|.++|++ ..++..++..+.+.++.+.|+|-+++|++|..||.|.+||++++ +.+..-+.|...|
T Consensus 114 ~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I 193 (327)
T KOG0643|consen 114 KQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI 193 (327)
T ss_pred hhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc
Confidence 4679999998 44567888888999999999999999999999999999999997 4566667899999
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCc--EEEeeCCCCCCceeeec
Q 046871 305 WALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSS--VHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 305 ~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~--I~iwd~~~~~~~~~~~~ 380 (764)
+.|.+++|..++++++.|.+-++||+.+-+.+..+....||++.+++|-. ++.++.... |.-=+.+.++-...|
T Consensus 194 nd~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF-- 271 (327)
T KOG0643|consen 194 NDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF-- 271 (327)
T ss_pred ccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH--
Confidence 99999999999999999999999999999999999999999999999976 444443221 111111111110000
Q ss_pred CCcceeccccccccccccCCCCCcccCCCCCCccccCCCC-ceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 381 GGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG-IVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 381 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~-i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
|. ..+.+......||.+ |..++|+|||+-.++|++||.|++.-..
T Consensus 272 ----------yh-------------~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 272 ----------YH-------------LIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ----------HH-------------HHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 00 022233345566665 8899999999999999999999998544
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-28 Score=226.30 Aligned_cols=262 Identities=18% Similarity=0.259 Sum_probs=218.2
Q ss_pred CCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecC
Q 046871 60 RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 60 ~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~ 137 (764)
..|.+.|-++....+.....--.-.+.+.+++|+++ +.+++++.||++++||......+++.++.|...|.++.|++.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 468899999964222211111234678999999986 489999999999999987778899999999999999999988
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCC
Q 046871 138 NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK 217 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 217 (764)
+...+++++.|++|++|+...+ ..+.++.+|.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~------------------------------------------------~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRP------------------------------------------------NSVQTFNGHN 147 (311)
T ss_pred cceeEEeeccCCceEeecCCCC------------------------------------------------cceEeecCCc
Confidence 8899999999999999998763 3345588999
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-eee
Q 046871 218 ESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQ-RCI 294 (764)
Q Consensus 218 ~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~-~~~ 294 (764)
..|+..+|+| .++.+++++.|+.+++||++..-....+..|...|.++.|+. +.+.++||+.|+.||+||+++. .++
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 9999999999 788999999999999999987655555889999999999997 6678999999999999999874 468
Q ss_pred EEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCeE-EEEee-cCCCeEEEEeeCCc---eEEEeCCCcEEEee
Q 046871 295 HSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRES-LLLCT-GEHPILQLALHDDN---IWVATTDSSVHRWP 368 (764)
Q Consensus 295 ~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~~-~~~~~-~~~~V~~l~~spd~---l~~~s~dg~I~iwd 368 (764)
..+.+|.-.|..+.|+|.. ..|++++.|-+++|||...+.. +.... |..-+..+.|++-. ++..+.|+.++||+
T Consensus 228 ~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 228 FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 8899999999999999954 6788999999999999985543 33333 45567788887654 88889999999998
Q ss_pred C
Q 046871 369 A 369 (764)
Q Consensus 369 ~ 369 (764)
.
T Consensus 308 p 308 (311)
T KOG0277|consen 308 P 308 (311)
T ss_pred c
Confidence 4
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.2e-27 Score=221.31 Aligned_cols=287 Identities=20% Similarity=0.281 Sum_probs=234.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||..+++-+.+ +.+|++|++++.|.++.+|-..+ ++.+-++.+|++.|+|+...-+. .+++|+.|.++++|
T Consensus 7 ~GHERplTqiKy-----N~eGDLlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 7 QGHERPLTQIKY-----NREGDLLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccCccccceEEe-----cCCCcEEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 499999999999 78999999999999999998876 77899999999999999998775 89999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe-----CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG-----LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
|+ ..++++.++. ...+|..+.|+ .++++++.+. ..+.|.++|++......
T Consensus 80 Dv-~tGk~la~~k-~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---------------------- 134 (327)
T KOG0643|consen 80 DV-ETGKQLATWK-TNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDI---------------------- 134 (327)
T ss_pred Ec-CCCcEEEEee-cCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhh----------------------
Confidence 98 6688888876 45689999999 6677766654 34679999998532100
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeccCCcCeEE
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK-TIKLRGHTDNIRS 264 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~ 264 (764)
........+..+.+.++.+-|.|-++.|++|..||.|.+||+++|+. +..-+.|...|+.
T Consensus 135 -------------------~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind 195 (327)
T KOG0643|consen 135 -------------------DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIND 195 (327)
T ss_pred -------------------cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccc
Confidence 00122334556678999999999999999999999999999999855 4555789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEE--eCCCCeE-------
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLT--DLATRES------- 335 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iw--d~~~~~~------- 335 (764)
|.+++|..+++++|.|.+-++||..+..+++++. -..+|++.+++|-..+++.|+.....-+. +.+.|+-
T Consensus 196 ~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~ 274 (327)
T KOG0643|consen 196 LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL 274 (327)
T ss_pred ccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence 9999999999999999999999999999999998 46699999999988888877654333333 2233321
Q ss_pred -----E-EEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 336 -----L-LLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 336 -----~-~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
+ ..-.|-+||++++|||+| ..+|++||.|++.-.+
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 1 223367899999999999 8888999999997554
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=241.61 Aligned_cols=278 Identities=21% Similarity=0.309 Sum_probs=235.3
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~ 113 (764)
.+.|++|+|.|. +|. +..+|+| -.+.||+..+ .....++....+.|.++.|..|| .|++|...|.|+|+|+
T Consensus 26 ~~~vssl~fsp~--~P~-d~aVt~S--~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~- 97 (487)
T KOG0310|consen 26 HNSVSSLCFSPK--HPY-DFAVTSS--VRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM- 97 (487)
T ss_pred cCcceeEecCCC--CCC-ceEEecc--cEEEEEecch--hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc-
Confidence 358999999442 122 2344443 4789999887 55677777788999999999999 6677777899999995
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
+....++.+..|+.+|..+.|+|.++.++++|+.|+.+++||+.++.
T Consensus 98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------------------------- 144 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------------------------- 144 (487)
T ss_pred ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---------------------------------
Confidence 55667889999999999999999999999999999999999998741
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCC
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg 271 (764)
....+.+|++.|.|.+|+| ++.++++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|
T Consensus 145 ---------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg 208 (487)
T KOG0310|consen 145 ---------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG 208 (487)
T ss_pred ---------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC
Confidence 2345789999999999999 4568999999999999999987 6677776 99999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCee-eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEe
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRC-IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLAL 350 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~-~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~ 350 (764)
..+++++ ...|++||+.+|.. +..+..|...|+|+.+..++..|++|+-|+.|++||+.+-+.+..+.-.++|.+++.
T Consensus 209 s~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiav 287 (487)
T KOG0310|consen 209 SLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAV 287 (487)
T ss_pred CEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEe
Confidence 9999987 46799999986554 444555999999999999999999999999999999999999999999999999999
Q ss_pred eCCc--eEEEeCCCcEEEeeCC
Q 046871 351 HDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 351 spd~--l~~~s~dg~I~iwd~~ 370 (764)
+|++ +++|..+|.+.+-+..
T Consensus 288 s~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cCCCceEEEecccceeeeehhh
Confidence 9988 9999999988766443
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-26 Score=221.66 Aligned_cols=279 Identities=19% Similarity=0.255 Sum_probs=235.5
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEEEEeC--CCcEEEe
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSS--DTTLKTW 110 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~--Dg~V~vW 110 (764)
-...|++|.| +++|.+|++++.|-+|+|||..+ ++.+.++..+...|..++|... ..++.++. |.+|+.-
T Consensus 13 ~~~~i~sl~f-----s~~G~~litss~dDsl~LYd~~~--g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 13 TNGKINSLDF-----SDDGLLLITSSEDDSLRLYDSLS--GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCCceeEEEe-----cCCCCEEEEecCCCeEEEEEcCC--CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 5678999999 89999999999999999999998 7889999999999999999866 46666665 8899999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
++ .+.+.++.+.+|...|..++.+ |.++.+++++.|++|++||++......
T Consensus 86 sl-~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg--------------------------- 136 (311)
T KOG1446|consen 86 SL-HDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQG--------------------------- 136 (311)
T ss_pred Ee-ecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCce---------------------------
Confidence 98 5689999999999999999999 556999999999999999998532211
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEec---cCCcCeEEE
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG--SKTIKLR---GHTDNIRSL 265 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~--~~~~~l~---~h~~~V~~l 265 (764)
.+. ...-..++|.|+|-++|++.....|++||++.- .+-.++. +-....+.|
T Consensus 137 ---------------------~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l 193 (311)
T KOG1446|consen 137 ---------------------LLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL 193 (311)
T ss_pred ---------------------EEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeee
Confidence 011 112235789999999999988889999999865 2333332 335688999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCce---EEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV---WALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG- 341 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V---~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~- 341 (764)
.|||||++|+.++..+.+++.|.-+|..+.++..+...- -..+|+||++++++|+.||+|.+|+++++..+..+..
T Consensus 194 ~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 194 EFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 999999999999999999999999999999998876542 5678899999999999999999999999999988875
Q ss_pred -CCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 342 -EHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 342 -~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
..++.++.|+|.....++.+..+.+|=...
T Consensus 274 ~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred CCCCccccccCCceeeeeecCceEEEEeccc
Confidence 678999999999988888889999996653
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=229.17 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=235.1
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC----------------CCccceeecccccceeEEEEeCCC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD----------------VGSCSATFESHVDWVNDAVLVGDN 96 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~----------------~~~~~~~l~~h~~~V~~v~~s~d~ 96 (764)
.|++++.|-+| |+||.++|||+.|..|+|.|++.. ....+++|-.|.+.|+++.|+|..
T Consensus 110 ~HK~~cR~aaf-----s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 110 SHKSPCRAAAF-----SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred ecccceeeeee-----CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 59999999999 899999999999999999998721 124578889999999999999986
Q ss_pred -eEEEEeCCCcEEEecCCCCC--eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 97 -TLVSCSSDTTLKTWNCSSDG--TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 97 -~l~s~s~Dg~V~vWd~~~~~--~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
.|++++.|++|+++|+..+. +..+.+ ....+|.++.|+ |.+.+|+.|..-..+++||+++..+....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~Qcfvsa-------- 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSA-------- 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeec--------
Confidence 89999999999999985432 112222 345689999999 78999999999999999999975322110
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
..-..|.+.|+++.+++.|++.++|+.||.|++||--+++++.
T Consensus 255 -------------------------------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 255 -------------------------------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred -------------------------------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 1145689999999999999999999999999999999999998
Q ss_pred Eec-cCCc-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec--C---ceEEEEEcCCCCEEEEecC-CCcE
Q 046871 254 KLR-GHTD-NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT--D---SVWALASTPTFSHVYSGGR-DLSL 325 (764)
Q Consensus 254 ~l~-~h~~-~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~--~---~V~~l~~spd~~~l~sgs~-Dg~I 325 (764)
++. .|.+ .|.+..|..+|+++++.+.|..+++|.+.+++++.++.+-. + --+...|+....+++.-.. .+.+
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~sl 377 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSL 377 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCce
Confidence 875 4543 78899999999999999999999999999999999987541 1 1234557666777775543 5789
Q ss_pred EEEeCCCCeEEE--EeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 326 YLTDLATRESLL--LCTGEHPILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 326 ~iwd~~~~~~~~--~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
.-||.++...+. .+.|.+.+..+.-+|.+ +++++.|-.+++|--
T Consensus 378 csWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 378 CSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred eeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 999999887655 45588999999999998 999999999999954
No 76
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.8e-26 Score=253.56 Aligned_cols=285 Identities=16% Similarity=0.214 Sum_probs=215.8
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC--------Cc---cceeecccccceeEEEEeC-CC-eEEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV--------GS---CSATFESHVDWVNDAVLVG-DN-TLVS 100 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~--------~~---~~~~l~~h~~~V~~v~~s~-d~-~l~s 100 (764)
|-..|+.... ++|+..+++++.+.....|+...+. ++ ....+.+|.+.|++++|+| ++ +|++
T Consensus 19 ~~~~i~~~~~-----~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 19 HFLNVTPSTA-----LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred ceeccccccc-----cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 4445655554 4666666777777777777654321 11 1224789999999999998 55 8999
Q ss_pred EeCCCcEEEecCCCCC------eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 101 CSSDTTLKTWNCSSDG------TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 101 ~s~Dg~V~vWd~~~~~------~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++.|++|++||+...+ ..+..+.+|...|.+++|+|...++|++++.|+.|++||+.++
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--------------- 158 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--------------- 158 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---------------
Confidence 9999999999985432 3566788999999999999655689999999999999999863
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK 254 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~ 254 (764)
.....+.+|...|.+++|+|+|++|++|+.|+.|++||+++++.+..
T Consensus 159 ---------------------------------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 159 ---------------------------------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred ---------------------------------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 12234567889999999999999999999999999999999999999
Q ss_pred eccCCcC-eEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCe-eeEEEeeec-CceEEEEEcCCCCEEEEec-CCCcEE
Q 046871 255 LRGHTDN-IRSLLLDSTGRYCLSGS----SDSMIRLWDLGQQR-CIHSYAVHT-DSVWALASTPTFSHVYSGG-RDLSLY 326 (764)
Q Consensus 255 l~~h~~~-V~~l~~spdg~~l~sgs----~Dg~I~iwdl~~~~-~~~~l~~h~-~~V~~l~~spd~~~l~sgs-~Dg~I~ 326 (764)
+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. ++.....+. ..+....|++++.+|++++ .|+.|+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 9999865 44677888888877654 47899999998754 444444333 3466667899999999887 599999
Q ss_pred EEeCCCCeEEEEee--cCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 327 LTDLATRESLLLCT--GEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 327 iwd~~~~~~~~~~~--~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
+||+.+++.+.... ...++..++|.|..-+-...--..++|.+..
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALTY 332 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEecC
Confidence 99999988766543 3567889999987632222223346666543
No 77
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=244.00 Aligned_cols=370 Identities=20% Similarity=0.270 Sum_probs=261.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEe--CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC--CCcE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGS--RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS--DTTL 107 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs--~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~--Dg~V 107 (764)
.|+.+++|+|| |++|+|+++|- ....+++|++.. ...+..|..|...|+|++|+|.+ ++++.++ |-.|
T Consensus 76 ssRk~~t~vAf-----S~~GryvatGEcG~~pa~kVw~la~--h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIV 148 (1080)
T KOG1408|consen 76 SSRKPLTCVAF-----SQNGRYVATGECGRTPASKVWSLAF--HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIV 148 (1080)
T ss_pred ccCcceeEEEE-----cCCCcEEEecccCCCccceeeeecc--ccchhhhhhccccceeeeecCCCcEEEeeccccceEE
Confidence 68899999999 89999999984 778899999998 55788999999999999999997 7777766 4567
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCc---------C------C
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME---------D------D 172 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~---------~------~ 172 (764)
.+||+..+. ...-..-...|..++|+ .++.++++.+. ..|++|.++............. . .
T Consensus 149 nv~dWr~N~--~~asnkiss~Vsav~fs-EdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava 224 (1080)
T KOG1408|consen 149 NVNDWRVNS--SGASNKISSVVSAVAFS-EDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA 224 (1080)
T ss_pred Ehhhhhhcc--cccccccceeEEEEEEc-cCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhh
Confidence 889874321 11112234567778888 67777777764 4578887765431100000000 0 0
Q ss_pred cCcc--------ccC-----------------------------------------------------------------
Q 046871 173 CSTG--------ING----------------------------------------------------------------- 179 (764)
Q Consensus 173 ~~~~--------~~~----------------------------------------------------------------- 179 (764)
|..+ +..
T Consensus 225 Cg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~ 304 (1080)
T KOG1408|consen 225 CGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGS 304 (1080)
T ss_pred hcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhcccccccccccc
Confidence 0000 000
Q ss_pred --------------------------------------------------------------------------------
Q 046871 180 -------------------------------------------------------------------------------- 179 (764)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (764)
T Consensus 305 d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~ 384 (1080)
T KOG1408|consen 305 DTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS 384 (1080)
T ss_pred chhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC
Confidence
Q ss_pred -CCCCCcccceeecCCCCcccccccCCC--Ccc----------------------------------ceeccCCCCcEEE
Q 046871 180 -SGNSLPVTSLRTIGSSNSISAHTSQSQ--GYV----------------------------------PIAAKGHKESVYA 222 (764)
Q Consensus 180 -~~~~~~~~~l~~~~~~~~i~~~~~~~~--~~~----------------------------------~~~~~~~~~~V~~ 222 (764)
..-.++-..+.+.++++.|++|+.... +.. .....+....+.+
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~ 464 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA 464 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE
Confidence 000001111234455566666654320 000 0001123346899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCC-CeeeEEEe
Q 046871 223 LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS---TGRYCLSGSSDSMIRLWDLGQ-QRCIHSYA 298 (764)
Q Consensus 223 l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~sgs~Dg~I~iwdl~~-~~~~~~l~ 298 (764)
++++|+|++|++|..-|.+++||+...+.+..+..|...|.|+.|+. ..++|++++.|.-|+|||+.. ..+++++.
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 99999999999999999999999999999999999999999999986 346899999999999999853 22334444
Q ss_pred eecCc-------------------------------------------------eEEEEEcCCCCEEEEecCCCcEEEEe
Q 046871 299 VHTDS-------------------------------------------------VWALASTPTFSHVYSGGRDLSLYLTD 329 (764)
Q Consensus 299 ~h~~~-------------------------------------------------V~~l~~spd~~~l~sgs~Dg~I~iwd 329 (764)
+|... ++.++..|..+++++++.|..|+||+
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 44333 45566666667788888899999999
Q ss_pred CCCCeEEEEeec----CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCC
Q 046871 330 LATRESLLLCTG----EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTP 403 (764)
Q Consensus 330 ~~~~~~~~~~~~----~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 403 (764)
+.+++....++. ++....+...|.+ +++.+.|.++.++|..+++++....+|..
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-------------------- 684 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-------------------- 684 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--------------------
Confidence 999988888873 4567788888888 67777899999999988887766554432
Q ss_pred cccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 404 VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 404 ~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
.++.+.|+||.++|++.+.||+|.||.+..
T Consensus 685 ----------------~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 685 ----------------AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ----------------heeeeeecccchhheeecCCceEEEEECch
Confidence 356788999999999999999999999875
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-28 Score=224.96 Aligned_cols=242 Identities=23% Similarity=0.338 Sum_probs=207.8
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~ 112 (764)
.+++..++|.+ ...+.+++++.||+++|||+... ..++..++.|...|.++.|++-. .++++|.|++|++|+.
T Consensus 60 ~D~LfdV~Wse----~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 60 EDGLFDVAWSE----NHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred ccceeEeeecC----CCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 45677788843 23468889999999999996543 56789999999999999999763 6888899999999997
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
...+.+.++.+|...|...+|+|...+++++++.|+.+++||++..
T Consensus 135 -~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------------------------------- 180 (311)
T KOG0277|consen 135 -NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------------------------------- 180 (311)
T ss_pred -CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC---------------------------------
Confidence 4577889999999999999999999999999999999999999863
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCC
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spd 270 (764)
++.. .+..|...|.++.|+. +.+.+++|+.|+.|++||+++. .++..+.+|.-.|+.+.|||.
T Consensus 181 --------------gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 181 --------------GKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH 245 (311)
T ss_pred --------------Ccee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence 2222 2667889999999998 7788999999999999999876 568889999999999999995
Q ss_pred C-CEEEEEeCCCcEEEEeCCC-CeeeEEEeeecCceEEEEEcC-CCCEEEEecCCCcEEEEeC
Q 046871 271 G-RYCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDSVWALASTP-TFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 271 g-~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~ 330 (764)
. ..|++++.|-++||||... ..++.+...|+.-|..+.|++ +..++++++.|+.++||+.
T Consensus 246 ~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4 5789999999999999874 456777888999999999986 6678999999999999984
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-27 Score=253.45 Aligned_cols=292 Identities=16% Similarity=0.243 Sum_probs=214.3
Q ss_pred eecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC---------CC--ccc
Q 046871 120 RTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN---------SL--PVT 187 (764)
Q Consensus 120 ~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~ 187 (764)
+.+. .|.+.|+++.|+ +++++||+||.|+.|+||.+.............. .....+...+. .. ...
T Consensus 260 Qe~~~ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~-~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS-CMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eccccccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccc-hhhhhhhhccccCcccccccccccccc
Confidence 3455 899999999999 8999999999999999999876322110000000 00000000000 00 000
Q ss_pred ceeecCCCCcccc--cccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 188 SLRTIGSSNSISA--HTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 188 ~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
..........+.+ ....-.......+.+|.+.|..|.|+.+ ++|++++.|.+||+|++...+++..|. |.+-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 0000111111000 0011113345668999999999999975 589999999999999999999999997 99999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee---c
Q 046871 266 LLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT---G 341 (764)
Q Consensus 266 ~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~---~ 341 (764)
+|+| |.+|+++|+-||.||||++...+.+.-... .+-|++++|.|||++.+.|+.+|.+++|+....+...... +
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 889999999999999999977666554443 4789999999999999999999999999998877654433 1
Q ss_pred ------CCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCC
Q 046871 342 ------EHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPN 412 (764)
Q Consensus 342 ------~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 412 (764)
...|+.+.|.|.. +++.+.|..|||+|.....++..|++....
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~---------------------------- 546 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT---------------------------- 546 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC----------------------------
Confidence 2369999998765 999999999999999888888777754322
Q ss_pred ccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 413 FTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 413 ~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
..-+...|+.||++|+++++|..|++|+...-
T Consensus 547 ------~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 547 ------SSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ------CcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 12345678889999999999999999998543
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-27 Score=223.71 Aligned_cols=338 Identities=21% Similarity=0.322 Sum_probs=254.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEE
Q 046871 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCL 132 (764)
Q Consensus 54 ~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l 132 (764)
.+++.-.++++. ...++.+.+|.+.|+.++..... .+.+++.|.+-+||.+ ..+.|+.++.+|.+.|+++
T Consensus 126 rivssFk~~t~~--------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsi 196 (481)
T KOG0300|consen 126 RIVSSFKDGTVK--------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSI 196 (481)
T ss_pred hheeeecCCcee--------EeehhhhcccccceeeehhhcCCcceeecccccceeEEee-ccccceeeecccccceeeE
Confidence 455555555533 45577789999999999886554 8889999999999998 5699999999999999999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCC------CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCC
Q 046871 133 AAAEKNSNIVASGGLGAEVFIWDIEAA------LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQ 206 (764)
Q Consensus 133 ~~~p~~~~~lasg~~dg~I~iwdl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 206 (764)
+|+ +.+.++++++.|++-.||...-. ..+.......+..+... ...... ++. -.+....
T Consensus 197 kfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe------~~~d~d-----~~~---~sD~~ti 261 (481)
T KOG0300|consen 197 KFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE------HNRDTD-----SSE---KSDGHTI 261 (481)
T ss_pred Eec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc------cccccc-----ccc---ccCCcee
Confidence 999 78999999999999999983211 11111110000000000 000000 000 0000111
Q ss_pred CccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 207 GYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 207 ~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
...+..+.+|.+.|.+..|...|+.+++++.|.+..+||+++++.+..+.||....+.++-+|..+++++++.|.+.++|
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence 23455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC-eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-eEEEEeecCCCeEEEEeeCCc--eEEEeCCC
Q 046871 287 DLGQQ-RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-ESLLLCTGEHPILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 287 dl~~~-~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~V~~l~~spd~--l~~~s~dg 362 (764)
|++.. ..+..|++|++.|+++.|.-+ ..+++|+.|.+|++||+++. .++..+....+++.++++..+ |+.--.+.
T Consensus 342 DFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 342 DFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred cchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc
Confidence 99743 457789999999999999866 46899999999999999875 467788889999999999988 55556678
Q ss_pred cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC-ceEeEEecCC--cEEEEeeCC
Q 046871 363 SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG-IVQHEILNNR--RHVLTKDAA 439 (764)
Q Consensus 363 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~-i~~~~~s~dg--~~l~t~s~d 439 (764)
.|++||++.....+. |.....|+.. +.+++|+.+. .-|+|++-|
T Consensus 421 qvRlfDlnG~RlaRl---------------------------------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARL---------------------------------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred eEEEEecCCCccccC---------------------------------CcccccccceeeeeeeccccCccccccccccc
Confidence 999999987543322 1111223333 4455565443 358899999
Q ss_pred CcEEEEEccc
Q 046871 440 GSVKLWEITR 449 (764)
Q Consensus 440 G~V~lWdi~t 449 (764)
..+.=|.+.+
T Consensus 468 R~v~gW~in~ 477 (481)
T KOG0300|consen 468 RMVAGWKINT 477 (481)
T ss_pred ceeeeeEecc
Confidence 9999999874
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.5e-27 Score=259.08 Aligned_cols=286 Identities=20% Similarity=0.250 Sum_probs=243.2
Q ss_pred CC-CCCeeEEEeecccccCCCcEEEEEe--CCCcEEEEeCCCC----------CCccceeecccccceeEEEEeCCC-eE
Q 046871 33 KH-CAGINCLAVLKSSVSNGVDYLFTGS--RDGTLKRWSLADD----------VGSCSATFESHVDWVNDAVLVGDN-TL 98 (764)
Q Consensus 33 gH-~~~V~~l~~~~~~~S~d~~~L~sgs--~Dg~I~iWd~~~~----------~~~~~~~l~~h~~~V~~v~~s~d~-~l 98 (764)
+| ...|.++.+ +|||..++||| .||.++||+.+.- -.+.+.++..|.+.|+|+.|++|| +|
T Consensus 10 ~H~~~~IfSIdv-----~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 10 NHNEKSIFSIDV-----HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred ccCCeeEEEEEe-----cCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence 44 346889998 89999999999 9999999987531 134466778899999999999998 99
Q ss_pred EEEeCCCcEEEecCCC------C-----------CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 99 VSCSSDTTLKTWNCSS------D-----------GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~------~-----------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
++||.|+.|.||.... - .++...+.+|...|..++|+ +++.+|++++.|++|.+|+..+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~tF-- 161 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAKTF-- 161 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccccc--
Confidence 9999999999999641 0 13677889999999999999 69999999999999999999873
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVV 241 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I 241 (764)
.....+.+|.+.|..+.|.|-|++|++-+.|++|
T Consensus 162 ----------------------------------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrti 195 (942)
T KOG0973|consen 162 ----------------------------------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTL 195 (942)
T ss_pred ----------------------------------------------eeeeeeecccccccceEECCccCeeeeecCCceE
Confidence 3345688999999999999999999999999999
Q ss_pred EEEeCCCCceeEEeccC------CcCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 242 RVWDPRTGSKTIKLRGH------TDNIRSLLLDSTGRYCLSGSS----DSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 242 ~iwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~l~sgs~----Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
++|++.+....+.+.++ ...++.+.|||||.+|++.-. -.++.|.+-.+.+.-..|-+|..++.++.|+|
T Consensus 196 kvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 196 KVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred EEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 99998776666555443 235788999999999998643 34689999989999999999999999999998
Q ss_pred C-----CC------------EEEEecCCCcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 312 T-----FS------------HVYSGGRDLSLYLTDLATRESLLLCTG--EHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 312 d-----~~------------~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
. .. .+|+|+.|++|-||.....+++..+.+ ...|..++|+||| |++++.||+|.+...+
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 2 11 578999999999999988888877764 7899999999999 9999999999999987
Q ss_pred CC
Q 046871 371 GR 372 (764)
Q Consensus 371 ~~ 372 (764)
..
T Consensus 356 e~ 357 (942)
T KOG0973|consen 356 EK 357 (942)
T ss_pred hH
Confidence 53
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=221.15 Aligned_cols=262 Identities=18% Similarity=0.231 Sum_probs=216.1
Q ss_pred eCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC---eEEEEeC
Q 046871 27 NNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN---TLVSCSS 103 (764)
Q Consensus 27 ~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~---~l~s~s~ 103 (764)
+...+..|.++|+|+|+ ++.++|+||.|-+|+|||+.+ ...+..+..|.+.|+++.|.++- .|++|+.
T Consensus 35 ~lF~~~aH~~sitavAV-------s~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV-------SGPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ccccccccccceeEEEe-------cceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 45567799999999999 589999999999999999998 66688889999999999999873 8999999
Q ss_pred CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
||.|.+|+. ....++.+++.|.+.|+.++.+ |.+.+-++.+.|+.+++|++-+++....
T Consensus 106 DG~i~iw~~-~~W~~~~slK~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v------------------- 164 (362)
T KOG0294|consen 106 DGHIIIWRV-GSWELLKSLKAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFV------------------- 164 (362)
T ss_pred CCcEEEEEc-CCeEEeeeecccccccceeEec-CCCceEEEEcCCceeeeehhhcCcccee-------------------
Confidence 999999996 5678999999999999999999 6788999999999999999976532111
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeE
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIR 263 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~ 263 (764)
..+ ....+.+.|+|.|.+++.++.++ |-+|.+.+.+....+. ....+.
T Consensus 165 ---------------------------~~L---~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~-~~~r~l 212 (362)
T KOG0294|consen 165 ---------------------------LNL---KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIE-NPKRIL 212 (362)
T ss_pred ---------------------------ecc---CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhh-ccccce
Confidence 001 12223489999999999888765 8899988776655554 234566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEE--cCCCCEEEEecCCCcEEEEeCCCC-----eEE
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS--TPTFSHVYSGGRDLSLYLTDLATR-----ESL 336 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~--spd~~~l~sgs~Dg~I~iwd~~~~-----~~~ 336 (764)
++.|. ++..|++|..|+.|++||..+..+...+.+|..+|-.+.+ .|++.+|+|+|+||.|++||++.. ..+
T Consensus 213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l 291 (362)
T KOG0294|consen 213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLL 291 (362)
T ss_pred eeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCccee
Confidence 77665 5678999999999999999999999999999999999985 688999999999999999999865 345
Q ss_pred EEeecCCCeEEEEee
Q 046871 337 LLCTGEHPILQLALH 351 (764)
Q Consensus 337 ~~~~~~~~V~~l~~s 351 (764)
..+..+..++|+...
T Consensus 292 ~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 292 AELNTNVRLTCLRVK 306 (362)
T ss_pred EEeecCCccceeeeh
Confidence 555556666666543
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=222.39 Aligned_cols=285 Identities=22% Similarity=0.343 Sum_probs=242.3
Q ss_pred CCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
.+.||+.+|..++.. .....+.+++.|-+.+||.+++ +.|+.++.+|.+.|+++.|++.+ ++++++.|++-.
T Consensus 143 e~~GHkDGiW~Vaa~-----~tqpi~gtASADhTA~iWs~Es--g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAAD-----STQPICGTASADHTARIWSLES--GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred hhcccccceeeehhh-----cCCcceeecccccceeEEeecc--ccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 457999999999984 4456899999999999999999 89999999999999999999987 788999999999
Q ss_pred EecC------CC-----------------------------CC----eeeeeccccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 109 TWNC------SS-----------------------------DG----TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 109 vWd~------~~-----------------------------~~----~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
||.. .. ++ .++..+.+|...|.+..|. ..++.+++++.|+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDR 294 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcceeeeeeccc
Confidence 9972 11 00 1344567899999999998 7899999999999
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
+..+||++++ ..+..+.+|....+.++-+|..
T Consensus 295 TAnlwDVEtg------------------------------------------------e~v~~LtGHd~ELtHcstHptQ 326 (481)
T KOG0300|consen 295 TANLWDVETG------------------------------------------------EVVNILTGHDSELTHCSTHPTQ 326 (481)
T ss_pred cceeeeeccC------------------------------------------------ceeccccCcchhccccccCCcc
Confidence 9999999984 3445688999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eeEEEeeecCceEEE
Q 046871 230 NLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-CIHSYAVHTDSVWAL 307 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h~~~V~~l 307 (764)
+++++.+.|.+.++||++.. ..+..|+||++.|++..|..|. .+++|+.|.+|++||+++.+ ++.++. -..+++.+
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRv 404 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRV 404 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCcccee
Confidence 99999999999999999854 4577899999999999998765 58999999999999998765 566666 56789999
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe-----ecCCCeEEEEeeCCc----eEEEeCCCcEEEeeCCCC
Q 046871 308 ASTPTFSHVYSGGRDLSLYLTDLATRESLLLC-----TGEHPILQLALHDDN----IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 308 ~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~-----~~~~~V~~l~~spd~----l~~~s~dg~I~iwd~~~~ 372 (764)
+.+..+..|+.--.+..|++||+.....-... .|..-|+|++|..+. |++++.|..+.-|++...
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99988889999888999999999765543322 245679999998776 999999999999998754
No 84
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1e-25 Score=248.41 Aligned_cols=246 Identities=18% Similarity=0.209 Sum_probs=194.4
Q ss_pred EeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCCe-------eeeeccccCCc
Q 046871 58 GSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDGT-------CIRTLRQHSDY 128 (764)
Q Consensus 58 gs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~-------~~~~l~~h~~~ 128 (764)
|+.+|.|++|+... ...+..+.+|.+.|.+++|+|+ + .|++|+.|++|+|||+...+. ++..+.+|...
T Consensus 50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 66789999999876 4568889999999999999996 3 899999999999999854321 34467889999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
|.+++|+|....++++++.|+.|++||++++..
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----------------------------------------------- 160 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----------------------------------------------- 160 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-----------------------------------------------
Confidence 999999954445678999999999999986421
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE-----EEcCCCCEEEEEeCCC--
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL-----LLDSTGRYCLSGSSDS-- 281 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l-----~~spdg~~l~sgs~Dg-- 281 (764)
...+ .|...|.+++|+++|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+. .|++++.+|++++.|+
T Consensus 161 -~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 161 -AFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred -EEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 1112 245679999999999999999999999999999999999999998865443 3458889999988774
Q ss_pred --cEEEEeCCC-CeeeEEEeeec--CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE--EeecCCCeEEEEeeCCc
Q 046871 282 --MIRLWDLGQ-QRCIHSYAVHT--DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL--LCTGEHPILQLALHDDN 354 (764)
Q Consensus 282 --~I~iwdl~~-~~~~~~l~~h~--~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~~l~~spd~ 354 (764)
+|+|||++. .+++..+..+. +.+......+++.++++|+.|+.|++|++..+.... .+.+..++.+++|.|+.
T Consensus 239 ~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 239 MREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 799999985 56666654333 333334445668889999999999999998765322 33356788899999986
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=8.9e-27 Score=222.99 Aligned_cols=288 Identities=22% Similarity=0.293 Sum_probs=229.9
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC-----------------CCeeeeeccccCCceEEEEEecCC
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS-----------------DGTCIRTLRQHSDYVTCLAAAEKN 138 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~-----------------~~~~~~~l~~h~~~V~~l~~~p~~ 138 (764)
...+..|..++.+.+|++|| ++++|+.|..|+|.|+.. ....++++..|.+.|+++.|+ |.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH-Pr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH-PR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec-ch
Confidence 45567899999999999998 789999999999999741 013577889999999999999 77
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCC
Q 046871 139 SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKE 218 (764)
Q Consensus 139 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 218 (764)
..+|++|+.|++|+++|+....... .........
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKr----------------------------------------------A~K~~qd~~ 217 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKR----------------------------------------------AFKVFQDTE 217 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHH----------------------------------------------HHHHhhccc
Confidence 8999999999999999997531110 011223356
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeE
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL---RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~ 295 (764)
+|.++.|+|.|.+|+.|.....+++||+.+-++...- .+|++.|+++.+++.|++.++||.||.|++||--+++|+.
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 7999999999999999999999999999998876543 4689999999999999999999999999999999999999
Q ss_pred EEe-eecC-ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCC------eEEEEeeCCc---eEEEeCCCcE
Q 046871 296 SYA-VHTD-SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHP------ILQLALHDDN---IWVATTDSSV 364 (764)
Q Consensus 296 ~l~-~h~~-~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~------V~~l~~spd~---l~~~s~dg~I 364 (764)
++. .|.+ .|.+..|..+++++++.+.|..+++|.+.+++.+..+.+.+. -+...|+... |+---..+.+
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~sl 377 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSL 377 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCce
Confidence 986 5654 599999999999999999999999999999999988875421 2334454444 2222335788
Q ss_pred EEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEE
Q 046871 365 HRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKL 444 (764)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~l 444 (764)
.-||.++......+.-++ ...+..+.-||.+.-++|++.|-.+|+
T Consensus 378 csWdaRtadr~~l~slgH-----------------------------------n~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 378 CSWDARTADRVALLSLGH-----------------------------------NGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred eeccccchhhhhhcccCC-----------------------------------CCCceEEEeCCCCCceeeecccceeee
Confidence 889988766544443221 223445566788889999999999999
Q ss_pred EE
Q 046871 445 WE 446 (764)
Q Consensus 445 Wd 446 (764)
|-
T Consensus 423 Wy 424 (430)
T KOG0640|consen 423 WY 424 (430)
T ss_pred ee
Confidence 95
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=234.60 Aligned_cols=284 Identities=20% Similarity=0.299 Sum_probs=243.0
Q ss_pred ccceeecccccceeEEEEeCC-CeEEEEeCCCcEEEecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 75 SCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.....+..|.+.|.++.|-++ +.|++++.|..|++|+..... ..+.++.+..+.|+.+.|. .++..+++++.|+.++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d-~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFD-SDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeec-CCCceEEeecCCCcee
Confidence 345667889999999999998 699999999999999974322 2566788888999999999 6788888899999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+|++... ....++.+|.+.|+++.|......+
T Consensus 245 ~Wnvd~~------------------------------------------------r~~~TLsGHtdkVt~ak~~~~~~~v 276 (459)
T KOG0288|consen 245 LWNVDSL------------------------------------------------RLRHTLSGHTDKVTAAKFKLSHSRV 276 (459)
T ss_pred eeeccch------------------------------------------------hhhhhhcccccceeeehhhccccce
Confidence 9999873 3345588999999999998877779
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
++|+.|.+|++||+....+..++- ....+..|+.+ ...+++|-.|++||+||+++..+......+. .|+++..+++
T Consensus 277 Vsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~ 352 (459)
T KOG0288|consen 277 VSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD 352 (459)
T ss_pred eeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC
Confidence 999999999999999988777654 34566777776 5678899999999999999999999998766 9999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEeec-----CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcce
Q 046871 313 FSHVYSGGRDLSLYLTDLATRESLLLCTG-----EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFI 385 (764)
Q Consensus 313 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-----~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 385 (764)
+..|.+++.|.++.+.|+++.+....+.. ....+.++|||++ +++|+.||.|+||++.++++...+...++
T Consensus 353 g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s-- 430 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS-- 430 (459)
T ss_pred CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC--
Confidence 99999999999999999999988777653 3458899999999 88899999999999999998877653211
Q ss_pred eccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEE
Q 046871 386 AGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLW 445 (764)
Q Consensus 386 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lW 445 (764)
..+|.+++|.+-|.+|++++.++.+.+|
T Consensus 431 --------------------------------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 --------------------------------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --------------------------------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 2268899999999999999999999999
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.4e-26 Score=240.82 Aligned_cols=283 Identities=22% Similarity=0.363 Sum_probs=230.9
Q ss_pred CccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe-eeeeccccCCceEE-EEEecCCCcEEEEEeCCCeE
Q 046871 74 GSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT-CIRTLRQHSDYVTC-LAAAEKNSNIVASGGLGAEV 151 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~-~~~~l~~h~~~V~~-l~~~p~~~~~lasg~~dg~I 151 (764)
.+....+.+|...|..++..++..++++|.||++++|+-....- ....+.+|.+.|.+ ++|.+.++..+++|+.|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 45567889999999999988878899999999999999522222 23567788888887 88886566779999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 231 (764)
.+|...+. .....+++|+..|++++...++.
T Consensus 84 ~v~~~~~~------------------------------------------------~P~~~LkgH~snVC~ls~~~~~~- 114 (745)
T KOG0301|consen 84 IVFKLSQA------------------------------------------------EPLYTLKGHKSNVCSLSIGEDGT- 114 (745)
T ss_pred EEEecCCC------------------------------------------------CchhhhhccccceeeeecCCcCc-
Confidence 99998763 33455899999999999888877
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
+++|+.|.++++|-. +++...+.+|+..|.++..-|++ .++|||.|.+|++|.- ++++++|.+|++-|..+++-+
T Consensus 115 ~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence 999999999999964 67777899999999999999988 8899999999999975 889999999999999999987
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEE-eeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccc
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLA-LHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNL 389 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~-~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (764)
++ .|+|++.||.|+.|++.....+....|..-|.++. ..+++ ++++++|++++||+.. ++.+.+.-+..
T Consensus 190 ~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt------ 260 (745)
T KOG0301|consen 190 DS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT------ 260 (745)
T ss_pred CC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc------
Confidence 74 58899999999999995544555566788899999 55566 8999999999999987 55555442221
Q ss_pred cccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 390 SFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 390 ~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
.+-++.+.++|. +++|++||.||||-...-
T Consensus 261 ------------------------------siWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 261 ------------------------------SIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ------------------------------ceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 233455555654 677888999999987743
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-26 Score=240.72 Aligned_cols=272 Identities=19% Similarity=0.290 Sum_probs=229.6
Q ss_pred EEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC
Q 046871 90 AVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 169 (764)
Q Consensus 90 v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~ 169 (764)
+.|+..+.|+.|. ...|++|+- ..+........+.+.|+++.|+ +++.+|++|..+|.|.|||..+....
T Consensus 183 ldWss~n~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~------- 252 (484)
T KOG0305|consen 183 LDWSSANVLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKT------- 252 (484)
T ss_pred hhcccCCeEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEEC-CCCCEEEEeecCCeEEEEehhhcccc-------
Confidence 5666556555554 467999995 4555555444458999999999 89999999999999999999864222
Q ss_pred cCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 046871 170 EDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG-HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT 248 (764)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~ 248 (764)
..+.+ |...|.+++|+ +..+.+|+.++.|..+|++.
T Consensus 253 -----------------------------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 253 -----------------------------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred -----------------------------------------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 22444 89999999999 77899999999999999999
Q ss_pred CceeEE-eccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC-CCCEEEEec--CCCc
Q 046871 249 GSKTIK-LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP-TFSHVYSGG--RDLS 324 (764)
Q Consensus 249 ~~~~~~-l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp-d~~~l~sgs--~Dg~ 324 (764)
.+.... +.+|...|..+.|++|++++++|+.|+.+.|||....+++..+..|...|.+++|+| ....||+|+ .|+.
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 877666 889999999999999999999999999999999999999999999999999999999 556788765 5999
Q ss_pred EEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEE--eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCC
Q 046871 325 LYLTDLATRESLLLCTGEHPILQLALHDDN--IWVA--TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEG 400 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 400 (764)
|++||..++..+..+.....|..|.|++.. |+++ ..++.|.||+..+.+.+..+.+|..
T Consensus 370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~----------------- 432 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS----------------- 432 (484)
T ss_pred EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-----------------
Confidence 999999999999999999999999999998 5554 3578999999988776666554432
Q ss_pred CCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 401 STPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 401 ~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
.|..++++|||..++||+.|.++++|++-..
T Consensus 433 -------------------RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 -------------------RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -------------------eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3567889999999999999999999998653
No 89
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.1e-25 Score=243.84 Aligned_cols=253 Identities=15% Similarity=0.202 Sum_probs=195.2
Q ss_pred cceeEEEEeCC-CeEEEEeCCCcEEEecCCC---------CCee---eeeccccCCceEEEEEecCCCcEEEEEeCCCeE
Q 046871 85 DWVNDAVLVGD-NTLVSCSSDTTLKTWNCSS---------DGTC---IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEV 151 (764)
Q Consensus 85 ~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~---------~~~~---~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I 151 (764)
..|.....+++ +.+++++.+.....|+... .++. ...+.+|.+.|.+++|+|.++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34444555555 3567777666666676321 1111 124678999999999996588899999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-C
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-N 230 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~ 230 (764)
++||+.+...... .......+.+|...|.+++|+|++ +
T Consensus 101 kIWdi~~~~~~~~-----------------------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~ 139 (493)
T PTZ00421 101 MGWGIPEEGLTQN-----------------------------------------ISDPIVHLQGHTKKVGIVSFHPSAMN 139 (493)
T ss_pred EEEecCCCccccc-----------------------------------------cCcceEEecCCCCcEEEEEeCcCCCC
Confidence 9999975311000 011234577899999999999975 6
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc-eEEEEE
Q 046871 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS-VWALAS 309 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~-V~~l~~ 309 (764)
+|++|+.|+.|+|||+++++.+..+.+|.+.|.+++|+|+|.+|++++.|++|++||+++++.+.++.+|.+. +..+.|
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW 219 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 456788
Q ss_pred cCCCCEEEEec----CCCcEEEEeCCCCe-EEEEee--cCCCeEEEEeeCCc--eEEEe-CCCcEEEeeCCCCCCceee
Q 046871 310 TPTFSHVYSGG----RDLSLYLTDLATRE-SLLLCT--GEHPILQLALHDDN--IWVAT-TDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 310 spd~~~l~sgs----~Dg~I~iwd~~~~~-~~~~~~--~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~~~~~~~~~ 378 (764)
.+++..+++++ .|+.|++||+++.. ++.... ....+....|++++ +++++ .|+.|++|++.++++....
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 88888887654 47899999998654 333332 23456667788888 66766 5999999999987765544
No 90
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.8e-25 Score=223.91 Aligned_cols=372 Identities=16% Similarity=0.232 Sum_probs=273.5
Q ss_pred CCCCCCCCeeEEEeecccccCCCcEEEEEeCCC--------cEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eE
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDG--------TLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TL 98 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg--------~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l 98 (764)
+..||+..|.||++ +||.-.+++|-.-| .++|||..+ ...+..+......|.|++|++- | .+
T Consensus 99 ~y~GH~ddikc~~v-----HPdri~vatGQ~ag~~g~~~~phvriWdsv~--L~TL~V~g~f~~GV~~vaFsk~~~G~~l 171 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAV-----HPDRIRVATGQGAGTSGRPLQPHVRIWDSVT--LSTLHVIGFFDRGVTCVAFSKINGGSLL 171 (626)
T ss_pred cccCCCCceEEEee-----cCCceeeccCcccccCCCcCCCeeeeccccc--ceeeeeeccccccceeeeecccCCCceE
Confidence 44799999999999 68888888775544 499999776 5556666677888999999974 3 33
Q ss_pred EEE--eCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 99 VSC--SSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 99 ~s~--s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
+.. +.+..+.|||+. .+......+...+.|....|+|.+.+++++++. +.+.+|+.+.+....+......... .
T Consensus 172 ~~vD~s~~h~lSVWdWq-k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ek--k 247 (626)
T KOG2106|consen 172 CAVDDSNPHMLSVWDWQ-KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREK--K 247 (626)
T ss_pred EEecCCCccccchhhch-hhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccc--e
Confidence 332 456678999984 355555566677889999999989999999986 4699999987655433221111111 1
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE---
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI--- 253 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~--- 253 (764)
+...-...+...+.+..+++.+.+|............ .|.+.|.+++...+|.+| +|+.|..|..||-. -+.++
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~e 324 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETE 324 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEe-ecCccceEEecccc-cccccccc
Confidence 1011111223345566677888888875544444444 999999999999998755 59999999999832 11111
Q ss_pred --------------------------------------EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeE
Q 046871 254 --------------------------------------KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 254 --------------------------------------~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~ 295 (764)
...+|.+....++..|+...+++++.|+.+++|+ ..+.+.
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence 1136777888889999999999999999999999 455554
Q ss_pred EEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 296 ~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
+.. -.+++.|+.|+|.| .++.|...|...+.|.++...+.......+++++.|+|+| +++|+.|+.|++|.+....
T Consensus 403 t~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 403 TKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred EEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 443 45788899999999 9999999999999999998887777778899999999999 9999999999999886543
Q ss_pred CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEe
Q 046871 374 PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i 453 (764)
.....- ..+.| +.|+.+.||+|+++|.+.+-|-.|..|.-..++.+
T Consensus 481 ~~y~r~---------------------------------~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 481 RKYSRV---------------------------------GKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred cEEEEe---------------------------------eeecC-ceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 221111 11223 66899999999999999999999999954444443
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.6e-25 Score=210.21 Aligned_cols=251 Identities=17% Similarity=0.203 Sum_probs=214.8
Q ss_pred eeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeee--eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 78 ATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 78 ~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~--~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
+.+++|...|.+++|+-+| +|++++.|+++++|++... +.. ....+|.+.|-.++|+|+..++|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 5567899999999999998 8999999999999998543 322 24578999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
|++.++.. ..... .+.-.-+.|+|+|.+++.
T Consensus 93 d~r~~k~~------------------------------------------------~~i~~-~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 93 DIRSGKCT------------------------------------------------ARIET-KGENINITWSPDGEYIAV 123 (313)
T ss_pred EeccCcEE------------------------------------------------EEeec-cCcceEEEEcCCCCEEEE
Confidence 99975322 11211 233346789999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC
Q 046871 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314 (764)
Q Consensus 235 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~ 314 (764)
++.|..|.+.|.++.+.+...+ ..-.+.-++|+-++.+++.....|+|.|......+++++++.|.....||.|+|+|+
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred ecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc
Confidence 9999999999999888776655 456778899998888888887889999999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 315 HVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
+|++|+.|-.+.+||+..--+++.+. ..-||..+.|+-+| |++|++|..|-|=++++|..+..++
T Consensus 203 yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 203 YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 99999999999999999887777665 58899999999999 9999999999999999887665544
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2e-25 Score=222.96 Aligned_cols=279 Identities=17% Similarity=0.294 Sum_probs=234.5
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS 114 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~ 114 (764)
-+|.++.. .+....++||+.|..+.++|... .+.+.+|+||...|+.+.|+++. .+++++.|..|+||.. .
T Consensus 220 pgi~ald~-----~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~-~ 291 (506)
T KOG0289|consen 220 PGITALDI-----IPSSSKILTGGEDKTAVLFDKPS--NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV-P 291 (506)
T ss_pred CCeeEEee-----cCCCCcceecCCCCceEEEecch--hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc-c
Confidence 46777777 35567899999999999999998 77899999999999999999996 8899999999999996 4
Q ss_pred CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 115 DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 115 ~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
...+......|..+|+.+..+ +.+.+|++++.|++..+.|++++....+
T Consensus 292 ~~s~~~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~------------------------------ 340 (506)
T KOG0289|consen 292 LSSEPTSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTV------------------------------ 340 (506)
T ss_pred cccCccccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEE------------------------------
Confidence 456777888999999999999 7899999999999999999987532211
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEE
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 274 (764)
.......-.+++.+|+|||.+|.+|..||.|+|||+.++..+..|.+|+++|.+|.|+.+|-+|
T Consensus 341 ----------------vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L 404 (506)
T KOG0289|consen 341 ----------------VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL 404 (506)
T ss_pred ----------------EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE
Confidence 1111233458999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeEEEeeec-CceEEEEEcCCCCEEEEecCCCcEEEEeCCC--CeEEEEee-cCCCeEEEEe
Q 046871 275 LSGSSDSMIRLWDLGQQRCIHSYAVHT-DSVWALASTPTFSHVYSGGRDLSLYLTDLAT--RESLLLCT-GEHPILQLAL 350 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~~~~~~l~~h~-~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~-~~~~V~~l~~ 350 (764)
++++.|+.|++||++..+..+++.... ..|.++.|++.|.+|+.++.|=+|++++-.+ ...+..+. +.+..+++.|
T Consensus 405 at~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 405 ATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence 999999999999999988888887443 3699999999999999998887777777443 33444333 3457788888
Q ss_pred eCCc--eEEEeCCCcEEEeeC
Q 046871 351 HDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 351 spd~--l~~~s~dg~I~iwd~ 369 (764)
.... +++++.|..++++.+
T Consensus 485 g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceEEeeccchhheEEeec
Confidence 7776 777788888888754
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.5e-26 Score=229.49 Aligned_cols=241 Identities=24% Similarity=0.355 Sum_probs=208.7
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKT 109 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~v 109 (764)
...+..|.++.| -.||++||.|+..|.|+|+|..+ ...++.+.+|+.+|..+.|+|++ .|++|+.|+.+++
T Consensus 65 srFk~~v~s~~f-----R~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 65 SRFKDVVYSVDF-----RSDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred HhhccceeEEEe-----ecCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 346678888888 47999999999999999999665 55688899999999999999875 7889999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
||+ ++......+.+|+++|.|.+|+|.++++++||+.||.|++||++...
T Consensus 138 ~d~-s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----------------------------- 187 (487)
T KOG0310|consen 138 WDL-STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----------------------------- 187 (487)
T ss_pred EEc-CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-----------------------------
Confidence 998 44555668999999999999998888999999999999999998631
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEc
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~s 268 (764)
.......|..+|..+.+-|.|.+|++++. ..|++||+-+| +.+..+..|...|+|+++.
T Consensus 188 -------------------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 188 -------------------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred -------------------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEee
Confidence 11224568899999999999999998865 57999999865 5555555699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
.++..|++|+-|+.+++||+.+.+.++.+. -.++|.+++.+|+++.++.|..||.+.+-+.
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999999999999999999999998887 5689999999999999999999998877643
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-25 Score=235.37 Aligned_cols=269 Identities=22% Similarity=0.330 Sum_probs=227.9
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccc-cCCc
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQ-HSDY 128 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~-h~~~ 128 (764)
..+.||+|.. -.|.+|+..++. .......+...|+++.|+++| .|++|..+|.|.|||. ...+.+..+.+ |...
T Consensus 187 s~n~laValg-~~vylW~~~s~~--v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~-~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGS--VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDV-KEQKKTRTLRGSHASR 262 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCc--eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEeh-hhccccccccCCcCce
Confidence 4567777754 489999998844 333334448899999999997 8999999999999997 55677778888 9999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
|-+++|. ...+.+|+.|+.|..+|++.....
T Consensus 263 vg~laW~---~~~lssGsr~~~I~~~dvR~~~~~---------------------------------------------- 293 (484)
T KOG0305|consen 263 VGSLAWN---SSVLSSGSRDGKILNHDVRISQHV---------------------------------------------- 293 (484)
T ss_pred eEEEecc---CceEEEecCCCcEEEEEEecchhh----------------------------------------------
Confidence 9999998 789999999999999999864211
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCCEEEEEe--CCCcEEE
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGS--SDSMIRL 285 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs--~Dg~I~i 285 (764)
...+.+|...|+.+.|++|+.++|+|+.|+.+.|||....+++..+..|.+.|.+++|+| ....||+|+ .|+.|++
T Consensus 294 -~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 -VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred -hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 112778999999999999999999999999999999988899999999999999999999 556788764 6999999
Q ss_pred EeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe--cCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeC
Q 046871 286 WDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG--GRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATT 360 (764)
Q Consensus 286 wdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg--s~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~ 360 (764)
||..+++.+..+. -...|.+|.|++..+-|+++ -.++.|.||+..+...+..+. |...|..++++||+ +++|+.
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999999998886 45689999999988766643 457789999999877766554 78899999999999 999999
Q ss_pred CCcEEEeeCCCCCC
Q 046871 361 DSSVHRWPAEGRNP 374 (764)
Q Consensus 361 dg~I~iwd~~~~~~ 374 (764)
|.++++|++-...+
T Consensus 452 DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 452 DETLRFWNLFDERP 465 (484)
T ss_pred cCcEEeccccCCCC
Confidence 99999999977533
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=213.37 Aligned_cols=263 Identities=19% Similarity=0.235 Sum_probs=209.7
Q ss_pred CCCCeeEEEeecccccC-CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 34 HCAGINCLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
-.+.|.+|+| || ...+|+.||.||+||+|+++......-+....|.++|.+++|+.|| .+++|+.|+.+++||
T Consensus 26 P~DsIS~l~F-----SP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAF-----SPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEe-----ccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 3568999999 67 5566778999999999999874222235567899999999999998 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
+.+ + ....+..|.++|.++.|.+. ....|++|+.|.+|+.||++......
T Consensus 101 L~S-~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~--------------------------- 151 (347)
T KOG0647|consen 101 LAS-G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA--------------------------- 151 (347)
T ss_pred ccC-C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee---------------------------
Confidence 854 4 56778889999999999832 23489999999999999998642111
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ccCCcCeEEEEEc
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL--RGHTDNIRSLLLD 268 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l--~~h~~~V~~l~~s 268 (764)
...-.+.+|++..- ..+++++..+..|.+|+++++....+. ..-.-.++|++..
T Consensus 152 ----------------------t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f 207 (347)
T KOG0647|consen 152 ----------------------TLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF 207 (347)
T ss_pred ----------------------eeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE
Confidence 11235667777654 457888999999999999876443221 1123468999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC--eeeEEEeeecC---------ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQ--RCIHSYAVHTD---------SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~--~~~~~l~~h~~---------~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~ 337 (764)
+|....+.|+-+|.+.|..+..+ +.-.+|+.|.. .|++|+|+|....|+|+|.||++.+||-.....+.
T Consensus 208 ~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 208 QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 99888899999999999998776 55667788873 47899999999999999999999999988777666
Q ss_pred E-eecCCCeEEEEeeCCc
Q 046871 338 L-CTGEHPILQLALHDDN 354 (764)
Q Consensus 338 ~-~~~~~~V~~l~~spd~ 354 (764)
. -.+..+|+|.+|+.+|
T Consensus 288 ~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNG 305 (347)
T ss_pred ccCcCCCccceeEecCCC
Confidence 5 4478899999999998
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=224.07 Aligned_cols=280 Identities=20% Similarity=0.335 Sum_probs=232.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCc---------------cceee-cccccceeEEEEeCCC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS---------------CSATF-ESHVDWVNDAVLVGDN 96 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~---------------~~~~l-~~h~~~V~~v~~s~d~ 96 (764)
.|..+|.|+++ +++.++.++++.||+|.=|++.++... ....- +.|...+.+++.++|+
T Consensus 140 ~H~~s~~~val-----s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 140 KHQLSVTSVAL-----SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred cccCcceEEEe-----eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 79999999999 799999999999999999998774311 01111 3788999999999998
Q ss_pred -eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 97 -~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
+|++|+.|..|.||+. .+.+.++.+.+|.+.|.+++|- ...+.+++++.|+.|++|+++..
T Consensus 215 kylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~---------------- 276 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQL---------------- 276 (479)
T ss_pred cEEEecCCCceEEEecC-cccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehhHh----------------
Confidence 8999999999999997 5688889999999999999999 78889999999999999999863
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
..+.++.+|.+.|.+|....-++.+-+|+.|+++++|++. .+....+
T Consensus 277 --------------------------------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlif 323 (479)
T KOG0299|consen 277 --------------------------------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIF 323 (479)
T ss_pred --------------------------------HHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeee
Confidence 2334588999999999988888888888899999999994 3444567
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee-e-----------cCceEEEEEcCCCCEEEEecCCC
Q 046871 256 RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV-H-----------TDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~-h-----------~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
.+|.+.+.|++|-. ...+++||.+|.|.+|++...+++.+... | ...|++++..|...++++|+.+|
T Consensus 324 rg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G 402 (479)
T KOG0299|consen 324 RGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG 402 (479)
T ss_pred eCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence 78999999999975 45789999999999999999888877642 2 12789999999999999999999
Q ss_pred cEEEEeCCCC----eEEEEeecCCCeEEEEeeCCc--eEEEe-CCCcEEEeeC
Q 046871 324 SLYLTDLATR----ESLLLCTGEHPILQLALHDDN--IWVAT-TDSSVHRWPA 369 (764)
Q Consensus 324 ~I~iwd~~~~----~~~~~~~~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~ 369 (764)
.|++|-+..+ .++..+...+-|++++|++++ +++|. ....+-.|-.
T Consensus 403 ~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 403 CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 9999999877 344455567889999999999 55543 3444545533
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=227.35 Aligned_cols=285 Identities=18% Similarity=0.285 Sum_probs=230.9
Q ss_pred cceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 76 CSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
.+..+.+|.+.|.|++-+|.. .+++|+.||.|++||+ ....+..++..|.+.|..|++. . ..++++|.|.+|+.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~AH~G~V~Gi~v~-~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKAHEGLVRGICVT-Q--TSFFTVGDDKTVKQ 133 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeecccCceeeEEec-c--cceEEecCCcceee
Confidence 456678999999999999985 7999999999999998 5688999999999999999998 3 78889999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
|.++... .. .....+.++.+..+..++.++
T Consensus 134 wk~~~~p-------------------------------------------------~~-tilg~s~~~gIdh~~~~~~Fa 163 (433)
T KOG0268|consen 134 WKIDGPP-------------------------------------------------LH-TILGKSVYLGIDHHRKNSVFA 163 (433)
T ss_pred eeccCCc-------------------------------------------------ce-eeecccccccccccccccccc
Confidence 9987520 00 111234456666666677888
Q ss_pred EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
++|. .|.|||..-..++..+.-..+.|.++.|+|-.. .|++|.+|+.|.+||++++.+++.+. -...-+.|+|+|.
T Consensus 164 TcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPe 240 (433)
T KOG0268|consen 164 TCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPE 240 (433)
T ss_pred ccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCcc
Confidence 8875 589999998889999988889999999999665 46677799999999999999887765 2345578999998
Q ss_pred CCEEEEecCCCcEEEEeCCCCe-EEEEe-ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceecc
Q 046871 313 FSHVYSGGRDLSLYLTDLATRE-SLLLC-TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGN 388 (764)
Q Consensus 313 ~~~l~sgs~Dg~I~iwd~~~~~-~~~~~-~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 388 (764)
+-.|++|+.|..++.+|++.-. ++... .|...|..+.|+|.| +++|+.|.+|+||.++.+....++..
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-------- 312 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-------- 312 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--------
Confidence 8888999999999999998654 33333 367789999999999 99999999999999987654333211
Q ss_pred ccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEE
Q 046871 389 LSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 389 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~ 452 (764)
.-...+.++.||.|.+++++||.||+|++|.....+.
T Consensus 313 ---------------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 313 ---------------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ---------------------------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 1123478889999999999999999999998664443
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.9e-25 Score=211.68 Aligned_cols=264 Identities=17% Similarity=0.273 Sum_probs=213.4
Q ss_pred EEEEeCCCcEEEecCCCCC-----------eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 046871 98 LVSCSSDTTLKTWNCSSDG-----------TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSG 166 (764)
Q Consensus 98 l~s~s~Dg~V~vWd~~~~~-----------~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~ 166 (764)
+++|+....|.-+++.... ..+..+..|.+.|++++.+ +.++|+|+.|-+|+|||+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~------- 73 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKR------- 73 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccch-------
Confidence 5677776666655543221 1244567899999999998 899999999999999999863
Q ss_pred CCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Q 046871 167 DAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN--LLVSGGTEKVVRVW 244 (764)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~--~l~sgs~dg~I~iw 244 (764)
.....+..|.+.|+++.|.+.-. .|++|+.||.|.+|
T Consensus 74 -----------------------------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 74 -----------------------------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred -----------------------------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 22234667899999999998654 89999999999999
Q ss_pred eCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCc
Q 046871 245 DPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLS 324 (764)
Q Consensus 245 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~ 324 (764)
+....+.+..+++|.+.|+.++++|.|++-++.+.|+.+++||+-.|+.-..+.-.. .-+.+.|+|.|.+|+.++.+ .
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc-E
Confidence 999999999999999999999999999999999999999999998887655554222 22348999999999988865 5
Q ss_pred EEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCC
Q 046871 325 LYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTP 403 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 403 (764)
|-+|.+.+......+..+..+.|+.|-..+ +++|..|+.|.+||.++..+...+..|...
T Consensus 191 i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R------------------- 251 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR------------------- 251 (362)
T ss_pred EEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhh-------------------
Confidence 889999888777766666778888888777 999999999999999987776666544332
Q ss_pred cccCCCCCCccccCCCCceEeEE--ecCCcEEEEeeCCCcEEEEEcccc
Q 046871 404 VSSRFKEPNFTIPGIPGIVQHEI--LNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 404 ~~~~~~~~~~~i~g~~~i~~~~~--s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
|..+.+ .|++.+|+|+++||.|+|||+...
T Consensus 252 -----------------VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 -----------------VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -----------------eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 223332 357789999999999999999865
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3e-25 Score=233.54 Aligned_cols=344 Identities=18% Similarity=0.256 Sum_probs=243.8
Q ss_pred ceeecccccceeEEEEeCC---C-eEEEEeCCCcEEEecCCCCC--------------------eee----------eec
Q 046871 77 SATFESHVDWVNDAVLVGD---N-TLVSCSSDTTLKTWNCSSDG--------------------TCI----------RTL 122 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d---~-~l~s~s~Dg~V~vWd~~~~~--------------------~~~----------~~l 122 (764)
...++||.+||.+++|... . +|+|+|.|..||||.+...+ ... ..+
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence 4567899999999999843 2 78999999999999864322 111 123
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC----CCCCCCcCCcCccccCCCCCCcccceeecCCCCcc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS----KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSI 198 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 198 (764)
.+|.+.|.++.|+ +.+..|++++.|.++.+|......-.- +.... .....++...-.......+...+..+..
T Consensus 264 ~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~--gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 264 MGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV--GGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred cCcccceEEEEEc-cchhhheecccCcceEEEecCCccceEEEEEEeecc--cccccceeeEEEcCCCCEEEEecccCcE
Confidence 4899999999999 667889999999999999887642110 00000 0111111111112222334455566777
Q ss_pred cccccCC--CCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeccCCcCeEEEEEcCCCC
Q 046871 199 SAHTSQS--QGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG----SKTIKLRGHTDNIRSLLLDSTGR 272 (764)
Q Consensus 199 ~~~~~~~--~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~ 272 (764)
.+|.... .........+|.+.|..++|.|.|.+|++.+.|.+-|++-.-.. ..+..-+-|.-.++|+++-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 7777222 22334456899999999999999999999999999999865411 23344456888899999988666
Q ss_pred EEEEEeCCCcEEEEeCCC-------------------------------------------Ce----e------------
Q 046871 273 YCLSGSSDSMIRLWDLGQ-------------------------------------------QR----C------------ 293 (764)
Q Consensus 273 ~l~sgs~Dg~I~iwdl~~-------------------------------------------~~----~------------ 293 (764)
.+++|.....+|+|+... |. +
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 788998889999996421 00 0
Q ss_pred -----------------eEEEeeecCceEEEEEcCCCCEEEEecCCC-----cEEEEeCCCCeEEE-EeecCCCeEEEEe
Q 046871 294 -----------------IHSYAVHTDSVWALASTPTFSHVYSGGRDL-----SLYLTDLATRESLL-LCTGEHPILQLAL 350 (764)
Q Consensus 294 -----------------~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg-----~I~iwd~~~~~~~~-~~~~~~~V~~l~~ 350 (764)
++.+.+|.-.|.+++.+|++++++|++... .|++|+..+-..+. +..|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 111236788899999999999999998653 58999998877766 4446778999999
Q ss_pred eCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC-ceEeEEe
Q 046871 351 HDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG-IVQHEIL 427 (764)
Q Consensus 351 spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~-i~~~~~s 427 (764)
+||+ |++++.|.++.+|........ .+. |. ....|.. |-.+.|+
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~-e~~-----------fa---------------------~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKD-EFR-----------FA---------------------CLKAHTRIIWDCSWS 627 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccch-hhh-----------hc---------------------cccccceEEEEcccC
Confidence 9999 999999999999987443211 000 00 0122333 5688999
Q ss_pred cCCcEEEEeeCCCcEEEEEcccc--EEeeec
Q 046871 428 NNRRHVLTKDAAGSVKLWEITRG--VVVEDY 456 (764)
Q Consensus 428 ~dg~~l~t~s~dG~V~lWdi~tg--~~i~~~ 456 (764)
||+.+++|+|.|..|++|..... +.+..+
T Consensus 628 pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 628 PDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred cccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 99999999999999999999887 555554
No 100
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.1e-24 Score=238.08 Aligned_cols=231 Identities=16% Similarity=0.171 Sum_probs=181.8
Q ss_pred EeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 101 CSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 101 ~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
|+.++.|++|+.. ....+..+.+|.+.|.+++|+|.++++|++|+.|+.|++||+.+.......
T Consensus 50 GG~~gvI~L~~~~-r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQM-RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--------------- 113 (568)
T ss_pred CCceeEEEeeecC-CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------------
Confidence 5567889999974 356778899999999999999656899999999999999999753110000
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeccCC
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL-LVSGGTEKVVRVWDPRTGSKTIKLRGHT 259 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~-l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 259 (764)
.......+.+|...|.+++|+|++.. |++++.|+.|++||+++++.+..+. |.
T Consensus 114 -------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~ 167 (568)
T PTZ00420 114 -------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP 167 (568)
T ss_pred -------------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC
Confidence 00112346789999999999998875 5789999999999999998887776 66
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEE-----EEEcCCCCEEEEecCCC----cEEEEeC
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWA-----LASTPTFSHVYSGGRDL----SLYLTDL 330 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~-----l~~spd~~~l~sgs~Dg----~I~iwd~ 330 (764)
..|.+++|+++|.+|++++.|+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|++++.|+ .|++||+
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 88999999999999999999999999999999999999999876433 34568999999888774 7999999
Q ss_pred CC-CeEEEEeecCCCeE---EEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 331 AT-RESLLLCTGEHPIL---QLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 331 ~~-~~~~~~~~~~~~V~---~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
+. +.++.......... .....+++ +++|+.|++|++|++..+.
T Consensus 248 r~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 248 KNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 95 55665555433322 22334445 6778899999999997653
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.6e-24 Score=206.00 Aligned_cols=268 Identities=17% Similarity=0.216 Sum_probs=215.6
Q ss_pred CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeC--CCe
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGL--GAE 150 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~--dg~ 150 (764)
.+..+.|..-.+.|+++.|+++| .+++++.|.++++||. ..+...+++..+...+..+.|. ...+.++.++. |.+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~-~~g~~~~ti~skkyG~~~~~Ft-h~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDS-LSGKQVKTINSKKYGVDLACFT-HHSNTVIHSSTKEDDT 81 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEc-CCCceeeEeecccccccEEEEe-cCCceEEEccCCCCCc
Confidence 34456666678889999999998 7888899999999997 5688899998888889999998 44555555554 788
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|+..++.+. +.++.+.+|...|.+|+.+|-++
T Consensus 82 IryLsl~dN------------------------------------------------kylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 82 IRYLSLHDN------------------------------------------------KYLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred eEEEEeecC------------------------------------------------ceEEEcCCCCceEEEEEecCCCC
Confidence 999999863 44566899999999999999889
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeeEEEeee---cCceE
Q 046871 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ--RCIHSYAVH---TDSVW 305 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~--~~~~~l~~h---~~~V~ 305 (764)
.+++++.|++|++||++..++...+..... ..++|+|.|-++|++.....|++||++.- .+..++... ....+
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~ 191 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT 191 (311)
T ss_pred eEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee
Confidence 999999999999999998887776654333 34789999999999988889999999863 455555433 56789
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCC----CeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 306 ALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEH----PILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 306 ~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
.|.|+|||++++.+...+.+++.|--+|..+..+.... --...+|+||+ +++++.||+|.+|+++++..+..+.
T Consensus 192 ~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 192 DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 99999999999999999999999999999877766421 12577899999 7788889999999999999888877
Q ss_pred cCCcceeccccccc
Q 046871 380 RGGSFIAGNLSFSR 393 (764)
Q Consensus 380 ~~~~~~~~~~~~s~ 393 (764)
+.+.....++.|+|
T Consensus 272 ~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 272 GPNGGPVSCVRFNP 285 (311)
T ss_pred CCCCCCccccccCC
Confidence 65443333444443
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-24 Score=209.47 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=215.2
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS 114 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~ 114 (764)
...|++|.| +|.++.|+.++.||++++||+... . +...-.|..++.+++|.++..+++|+.||.|+.+|+.
T Consensus 13 ~d~IS~v~f-----~~~~~~LLvssWDgslrlYdv~~~--~-l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln- 83 (323)
T KOG1036|consen 13 EDGISSVKF-----SPSSSDLLVSSWDGSLRLYDVPAN--S-LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLN- 83 (323)
T ss_pred hhceeeEEE-----cCcCCcEEEEeccCcEEEEeccch--h-hhhheecCCceeeeeccCCceEEEeccCceEEEEEec-
Confidence 467999999 678888999999999999999874 2 3333458999999999998899999999999999983
Q ss_pred CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 115 DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 115 ~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
......+..|...|.||.++ .....+++|+.|++|++||.+......
T Consensus 84 -~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~------------------------------- 130 (323)
T KOG1036|consen 84 -TGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVG------------------------------- 130 (323)
T ss_pred -CCcceeeccCCCceEEEEee-ccCCeEEEcccCccEEEEecccccccc-------------------------------
Confidence 33445677899999999999 678899999999999999998521110
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec--cCCcCeEEEEEcCCCC
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR--GHTDNIRSLLLDSTGR 272 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~ 272 (764)
.......|+++..+ |+.|++|+.+..|.+||+++.....+.. .-.-.++|+++-|++.
T Consensus 131 ------------------~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e 190 (323)
T KOG1036|consen 131 ------------------TFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE 190 (323)
T ss_pred ------------------ccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC
Confidence 11223479998887 8899999999999999999876544322 2345789999999888
Q ss_pred EEEEEeCCCcEEEEeCCCC----eeeEEEeeecC---------ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe
Q 046871 273 YCLSGSSDSMIRLWDLGQQ----RCIHSYAVHTD---------SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC 339 (764)
Q Consensus 273 ~l~sgs~Dg~I~iwdl~~~----~~~~~l~~h~~---------~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 339 (764)
=.+++|-||.|.+=.+... +....|+.|.. +|++|+|+|-...|+||+.||.|.+||+.+.+.+..+
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence 8999999999988776654 45566777753 5999999999999999999999999999998888777
Q ss_pred ec-CCCeEEEEeeCCc--eEEEeC
Q 046871 340 TG-EHPILQLALHDDN--IWVATT 360 (764)
Q Consensus 340 ~~-~~~V~~l~~spd~--l~~~s~ 360 (764)
.. +..|..++|+.+| |++|+.
T Consensus 271 ~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 271 AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCCCceEEEEeccCCCeEEEEec
Confidence 65 4679999999999 666654
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=232.55 Aligned_cols=369 Identities=15% Similarity=0.223 Sum_probs=278.5
Q ss_pred C-CCCeeEEEeecccccCCCc-EEEEEeCCCcEEEEeCCCCCCccceee-cccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 34 H-CAGINCLAVLKSSVSNGVD-YLFTGSRDGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 34 H-~~~V~~l~~~~~~~S~d~~-~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
| .+.|++++| ..||. .|++|+..|.+-+||++. .+.+..+ ..|.+.|....|.+.. .+++++.|..+++
T Consensus 242 ~d~g~VtslSF-----rtDG~p~las~~~~G~m~~wDLe~--kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 242 QDWGRVTSLSF-----RTDGNPLLASGRSNGDMAFWDLEK--KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV 314 (910)
T ss_pred ccccceeEEEe-----ccCCCeeEEeccCCceEEEEEcCC--CeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence 5 489999999 56776 566777779999999997 4444444 4899999999999886 8999999999999
Q ss_pred ecCCC-CC--eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc-------------
Q 046871 110 WNCSS-DG--TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC------------- 173 (764)
Q Consensus 110 Wd~~~-~~--~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~------------- 173 (764)
|-.+. ++ +.++.-.+|..+..|+.|...++..+.+++.|++++.+++.......+.........
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence 96532 22 556777899999999999877899999999999999998754322211111000000
Q ss_pred ---CccccCCCCCCcccc--eeecCCCCcccccccCCCCccce-----eccCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 046871 174 ---STGINGSGNSLPVTS--LRTIGSSNSISAHTSQSQGYVPI-----AAKGHKESVYALAMNDSGNLLVSGGTEKVVRV 243 (764)
Q Consensus 174 ---~~~~~~~~~~~~~~~--l~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~i 243 (764)
...+.........+. +...........|.......-.. .++.....+++++.++.|++.+.|+..|.|-+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 000000000000000 01111222233344333222111 12224577999999999999999999999999
Q ss_pred EeCCCCceeEEe---ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec
Q 046871 244 WDPRTGSKTIKL---RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 244 wd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs 320 (764)
|++++|-....+ ..|..+|+.++...-++.+++++.+|.+++||......+..+. -...+.++..+.....++.+.
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhc
Confidence 999999888888 5899999999999999999999999999999999888777776 345678888888888999999
Q ss_pred CCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccc
Q 046871 321 RDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVS 397 (764)
Q Consensus 321 ~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 397 (764)
.|-.|+++|..+.+.++.+. |.+.|+.++||||| |++++.|++|++||+.++.++..+..
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----------------- 616 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----------------- 616 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------------
Confidence 99999999999999888777 78999999999999 99999999999999999887766542
Q ss_pred cCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCC-CcEEEEEc
Q 046871 398 LEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAA-GSVKLWEI 447 (764)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~d-G~V~lWdi 447 (764)
....+.+.|+|+|.+|||...| .-|++|--
T Consensus 617 --------------------d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 --------------------DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred --------------------CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 1235678899999999999998 67999963
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=193.51 Aligned_cols=283 Identities=20% Similarity=0.289 Sum_probs=225.0
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC------C----CC---ccceeecccccceeEEEEeCCC-eEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD------D----VG---SCSATFESHVDWVNDAVLVGDN-TLV 99 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~------~----~~---~~~~~l~~h~~~V~~v~~s~d~-~l~ 99 (764)
-...|.+++| .|.|.+.++|+...+.+|-.... . .. ...+.-+.|.+.|.|.+|+|+| .++
T Consensus 31 dsqairav~f-----hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAF-----HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred chhheeeEEe-----cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 3457999999 68999999999999998864322 0 00 1122335789999999999998 889
Q ss_pred EEeCCCcEEEecCCCCC----eeeeeccccCCceEEEEEec---CCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcC
Q 046871 100 SCSSDTTLKTWNCSSDG----TCIRTLRQHSDYVTCLAAAE---KNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMED 171 (764)
Q Consensus 100 s~s~Dg~V~vWd~~~~~----~~~~~l~~h~~~V~~l~~~p---~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~ 171 (764)
+|+.|.+|++..+..+. -.-..+.-|.+.|..++|.. ..+.+|++++. |..|++-|...+
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g------------ 173 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG------------ 173 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC------------
Confidence 99999999998763321 11235667999999999972 23567777654 556777776653
Q ss_pred CcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 046871 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK 251 (764)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~ 251 (764)
.....+.+|.+-|.++- +-+|-.+++|+.|.+|++||++-..+
T Consensus 174 ------------------------------------~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~ 216 (350)
T KOG0641|consen 174 ------------------------------------QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSC 216 (350)
T ss_pred ------------------------------------CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccce
Confidence 22345788999888774 23488999999999999999998888
Q ss_pred eEEecc-------CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCc
Q 046871 252 TIKLRG-------HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLS 324 (764)
Q Consensus 252 ~~~l~~-------h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~ 324 (764)
+..+.. ..+.|.++++.|.|++|++|-.|....+||++.++.++.+..|+..|.++.|+|...++++++.|..
T Consensus 217 v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 217 VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce
Confidence 877642 2357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCe-----EEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 325 LYLTDLATRE-----SLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 325 I~iwd~~~~~-----~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
|++.|+...- .+..-.|...+..+.|+|.. +++.+.|.++.+|-+.
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999997431 23344577888899999998 8888999999999764
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=222.54 Aligned_cols=276 Identities=22% Similarity=0.356 Sum_probs=227.5
Q ss_pred eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcc
Q 046871 119 IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSI 198 (764)
Q Consensus 119 ~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 198 (764)
...+..|..++.|++++ ++..+.++++.+++|.-|++.++............ .
T Consensus 135 ~~~~~~H~~s~~~vals-~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev--------------------------~ 187 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALS-PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV--------------------------L 187 (479)
T ss_pred ceeeccccCcceEEEee-ccccceeecCCCcceeeeehhcCcccccccccchh--------------------------h
Confidence 56677899999999999 78899999999999999999887533111100000 0
Q ss_pred cccccCCCCccceec-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE
Q 046871 199 SAHTSQSQGYVPIAA-KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 199 ~~~~~~~~~~~~~~~-~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg 277 (764)
...+...... ..|...+.+++.++||++|++|+.|..|.|||.++.+.+..+.+|.+.|.+++|-..-..++++
T Consensus 188 -----k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 188 -----KSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred -----hhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee
Confidence 0001111111 4889999999999999999999999999999999999999999999999999999888889999
Q ss_pred eCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eE
Q 046871 278 SSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IW 356 (764)
Q Consensus 278 s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~ 356 (764)
+.|++|++|++.....+.++-+|.+.|.+|....-.+.+-.|+.|+++++|++.....+....+.+.+-|++|-.+. ++
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFV 342 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccccee
Confidence 99999999999999999999999999999998877777778889999999999766666666678899999998777 99
Q ss_pred EEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEe
Q 046871 357 VATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTK 436 (764)
Q Consensus 357 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~ 436 (764)
+|+.+|.|.+|++...+++.+....++.... + ....+...|+.++..+....+++|
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~-------------------~-----~~~~~~~Witsla~i~~sdL~asG 398 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPE-------------------L-----DPVNGNFWITSLAVIPGSDLLASG 398 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCC-------------------c-----cccccccceeeeEecccCceEEec
Confidence 9999999999999999998887655443210 0 111222568999999999999999
Q ss_pred eCCCcEEEEEcccc
Q 046871 437 DAAGSVKLWEITRG 450 (764)
Q Consensus 437 s~dG~V~lWdi~tg 450 (764)
+.+|+|+||-+..|
T Consensus 399 S~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 399 SWSGCVRLWKIEDG 412 (479)
T ss_pred CCCCceEEEEecCC
Confidence 99999999999988
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=6.6e-25 Score=243.25 Aligned_cols=304 Identities=19% Similarity=0.261 Sum_probs=241.5
Q ss_pred cccceeEEEEeCCC-eEEEEe--CCCcEEEecCCCC-----------CeeeeeccccCCceEEEEEecCCCcEEEEEeCC
Q 046871 83 HVDWVNDAVLVGDN-TLVSCS--SDTTLKTWNCSSD-----------GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG 148 (764)
Q Consensus 83 h~~~V~~v~~s~d~-~l~s~s--~Dg~V~vWd~~~~-----------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d 148 (764)
+...|.++..+|++ .+++|+ .|+.++||+...- .+.+.+...|.+.|.|+.|+ +|+.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS-PDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-CCCCeEeeccCc
Confidence 35568899999998 899999 8999999986321 13345667899999999999 899999999999
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC
Q 046871 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228 (764)
Q Consensus 149 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 228 (764)
+.|.+|+........... ..+ ... ..+.......+.+|...|..++|+|+
T Consensus 91 ~~v~iW~~~~~~~~~~fg------------s~g------------~~~------~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFG------------STG------------GAK------NVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred ceEEEeeecccCCccccc------------ccc------------ccc------ccceeeEEEEEecCCCccceeccCCC
Confidence 999999987410000000 000 000 11123455678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC------
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD------ 302 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~------ 302 (764)
+.+|++++.|+.|.+||.++.+.+..+.+|.+.|..+.|+|-|+||++-+.|++|++|++.+..+.+.+..+-.
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999888878887775543
Q ss_pred ceEEEEEcCCCCEEEEecC----CCcEEEEeCCCCe-EEEEeecCCCeEEEEeeCC-------------------ceEEE
Q 046871 303 SVWALASTPTFSHVYSGGR----DLSLYLTDLATRE-SLLLCTGEHPILQLALHDD-------------------NIWVA 358 (764)
Q Consensus 303 ~V~~l~~spd~~~l~sgs~----Dg~I~iwd~~~~~-~~~~~~~~~~V~~l~~spd-------------------~l~~~ 358 (764)
.+..+.|+|||.+|++.-. -.++.|.+-.+.+ ....+.|..++.++.|+|. -+++|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 4788999999999997643 2367777766655 4456678899999999862 15778
Q ss_pred eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeC
Q 046871 359 TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA 438 (764)
Q Consensus 359 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~ 438 (764)
+.|++|.||.....+|...+.. ++ ...|..++|+|||..|+.+|.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~~--------------------------lf---------~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIHN--------------------------LF---------NKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred cCCccEEEEecCCCCchhhhhh--------------------------hh---------cCceeeeeEcCCCCeEEEEec
Confidence 8999999999877766554331 10 345889999999999999999
Q ss_pred CCcEEEEEccccEE
Q 046871 439 AGSVKLWEITRGVV 452 (764)
Q Consensus 439 dG~V~lWdi~tg~~ 452 (764)
||+|.+..++..++
T Consensus 346 DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 346 DGTVALIHFEEKEL 359 (942)
T ss_pred CCeEEEEEcchHHh
Confidence 99999999986544
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.1e-25 Score=221.96 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=207.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCc--------cceeecccccceeEEEEeCC--CeEEEEe
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS--------CSATFESHVDWVNDAVLVGD--NTLVSCS 102 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~--------~~~~l~~h~~~V~~v~~s~d--~~l~s~s 102 (764)
-|.+.|+-+...| .+..++|+++..+.|.|||..+.... .-.++.+|...=.+++|++. +.|++++
T Consensus 122 ~h~gEVnRaRymP----Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMP----QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCC----CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 4899999999864 45678888899999999998764322 23478899987788999976 5999999
Q ss_pred CCCcEEEecCCCCCe------eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 103 SDTTLKTWNCSSDGT------CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~------~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
.|++|++||+..... ....+.+|.+.|..++|++.+..+|++++.|+.+.|||+++. .
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~-------------- 261 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--T-------------- 261 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--C--------------
Confidence 999999999855433 345678999999999999989999999999999999999962 1
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeEE
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG-SKTIK 254 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~-~~~~~ 254 (764)
........+|.+.|.|++|+| ++.+||+|+.|++|++||+|+. +++..
T Consensus 262 ------------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~ 311 (422)
T KOG0264|consen 262 ------------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT 311 (422)
T ss_pred ------------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence 112234678999999999999 6778999999999999999986 57889
Q ss_pred eccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC--------------eeeEEEeeecCceEEEEEcCCCCEE-EE
Q 046871 255 LRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQ--------------RCIHSYAVHTDSVWALASTPTFSHV-YS 318 (764)
Q Consensus 255 l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~--------------~~~~~l~~h~~~V~~l~~spd~~~l-~s 318 (764)
+.+|.+.|..+.|+|.. ..|++++.|+.+.+||+..- +.+..-.+|+..|..+.|+|+..++ +|
T Consensus 312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 99999999999999965 56888999999999998531 2356667899999999999988765 58
Q ss_pred ecCCCcEEEEeCC
Q 046871 319 GGRDLSLYLTDLA 331 (764)
Q Consensus 319 gs~Dg~I~iwd~~ 331 (764)
.+.|+.+.||...
T Consensus 392 vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 392 VAEDNILQIWQMA 404 (422)
T ss_pred ecCCceEEEeecc
Confidence 8999999999975
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=224.48 Aligned_cols=298 Identities=15% Similarity=0.200 Sum_probs=221.1
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeee---ecc-ccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIR---TLR-QHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~---~l~-~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
.....+.+|+..|.++++.|.| +|++||.|.+|++||+..-....+ .+. .....|++++|+ +.++.|++.+...
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-VTGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-CCCCeEEEEecCc
Confidence 3456788999999999999998 999999999999999843222222 222 344679999999 6777777777778
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS- 228 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~- 228 (764)
..+++|-......... ..+..|. -....++|...++|.+|+|.
T Consensus 237 qakl~DRdG~~~~e~~---------------------------KGDQYI~---------Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFS---------------------------KGDQYIR---------DMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred ceeEEccCCceeeeee---------------------------ccchhhh---------hhhccCCceeeeeccccccCc
Confidence 8999997653221110 0000000 11236789999999999995
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-eEEec-----cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eeEEEee
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSK-TIKLR-----GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR---CIHSYAV 299 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~-~~~l~-----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~---~~~~l~~ 299 (764)
...+++++.||++|+||+...+. +..++ +..-++++++|++||+.|++|+.||.|.+|+..... ....-..
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 46799999999999999976543 22332 233478999999999999999999999999985532 2333457
Q ss_pred ecC--ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-EEEEee---cCCCeEEEEeeCCc--eEEEeC------CCcEE
Q 046871 300 HTD--SVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCT---GEHPILQLALHDDN--IWVATT------DSSVH 365 (764)
Q Consensus 300 h~~--~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~---~~~~V~~l~~spd~--l~~~s~------dg~I~ 365 (764)
|.. .|+||.|++||++|++-+.|+++++||++..+ ++.... ...+-+.++|+|+. |++|+. .+.+.
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 877 89999999999999999999999999998754 333322 34567889999999 666653 46788
Q ss_pred EeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEE
Q 046871 366 RWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLW 445 (764)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lW 445 (764)
+||..+...+..+... ...+.++.|.|-=++|+.++.||++++|
T Consensus 441 f~d~~t~d~v~ki~i~------------------------------------~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDIS------------------------------------TASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEeccceeeEEEecCC------------------------------------CceEEEEeecchhhheeeecCCCceEEE
Confidence 8888776655544311 3347788888888899999999999986
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=207.88 Aligned_cols=297 Identities=14% Similarity=0.185 Sum_probs=219.3
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC----eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeE
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG----TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEV 151 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~----~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I 151 (764)
+..+++|.+.|++++|+.|| +|++++.|++|++|++..-. ++++.- -.-+..+.+.|.|+-..++++.-....+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 45678999999999999998 89999999999999973211 122111 1123567889995545666777777789
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 231 (764)
++|.+......... ...... ........|...|..+-....+.+
T Consensus 158 ~vyk~~K~~dG~~~--------------------------------~~~v~~----D~~~f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGS--------------------------------HHFVHI----DNLEFERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred EEEEeeecccCCCC--------------------------------cccccc----cccccchhcccceEEEeecCCceE
Confidence 99988643211000 000000 001123456677777777788899
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---CC-----eeeEEEeeecCc
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG---QQ-----RCIHSYAVHTDS 303 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~---~~-----~~~~~l~~h~~~ 303 (764)
|++++.|..|.+|+++ |+.+..+......-...++||+|+++++++..-.|++|.+- .| ..+..+.+|...
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 9999999999999998 99998888777778889999999999999999999999862 22 345678899999
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCC-------eEEEEe-----ecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCC
Q 046871 304 VWALASTPTFSHVYSGGRDLSLYLTDLATR-------ESLLLC-----TGEHPILQLALHDDN-IWVATTDSSVHRWPAE 370 (764)
Q Consensus 304 V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-------~~~~~~-----~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~ 370 (764)
|..++|+++...++|.+.||++++||+.-. +.+... .....-..+.++|.+ +++.+...+++++..+
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se 360 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE 360 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc
Confidence 999999999999999999999999998521 111111 112334489999999 8888888999999998
Q ss_pred CCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEc
Q 046871 371 GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi 447 (764)
+++....++..+ ...|.+++|++||++++|++ |..+++..-
T Consensus 361 ~g~~~~~~e~~h-----------------------------------~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 361 DGKDYPELEDIH-----------------------------------STTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred cCccchhHHHhh-----------------------------------cCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 887665554332 23366778888999999999 667777653
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2.1e-24 Score=227.29 Aligned_cols=387 Identities=18% Similarity=0.199 Sum_probs=266.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-------------------------------------
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG------------------------------------- 74 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~------------------------------------- 74 (764)
.||.+.|.++.| +|.+..|++++.|.++.+|.-.+..+
T Consensus 264 ~GHeDWV~sv~W-----~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 264 MGHEDWVYSVWW-----HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred cCcccceEEEEE-----ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 599999999999 68888999999999999998665311
Q ss_pred -------------ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC---eeeeeccccCCceEEEEEecC
Q 046871 75 -------------SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG---TCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 75 -------------~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~---~~~~~l~~h~~~V~~l~~~p~ 137 (764)
.....+.||.+.|.++.|.|.| +|+++|.|.+-|++-.-... ..+..-+-|...++|++|. +
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v-n 417 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV-N 417 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc-c
Confidence 1122346899999999999998 89999999999998642111 2334445688889999999 5
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCC---------CCC-CCCcCCcCccccCCCCCCcccc----------eeecCCCCc
Q 046871 138 NSNIVASGGLGAEVFIWDIEAALAPS---------KSG-DAMEDDCSTGINGSGNSLPVTS----------LRTIGSSNS 197 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~ 197 (764)
....|++|.....+|+|+........ ... ......+......+........ ....-....
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 57889999999999999975421110 000 0000001111111111000000 000000000
Q ss_pred ccccccC--------CCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEeccCCcCeEE
Q 046871 198 ISAHTSQ--------SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK-----VVRVWDPRTGSKTIKLRGHTDNIRS 264 (764)
Q Consensus 198 i~~~~~~--------~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-----~I~iwd~~~~~~~~~l~~h~~~V~~ 264 (764)
..+.... ........+.+|...|++++.+|+|+++|+++... .|++|+..+...+..+.+|.-.|+.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR 577 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence 0011100 00112345689999999999999999999987643 6999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCe----eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC--eEE--
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQR----CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR--ESL-- 336 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~----~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~--~~~-- 336 (764)
|+|||||++|++.|.|.++.+|...... .....+.|+.-||+..|+|++.+|+|+|+|.+|++|..... +.+
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 9999999999999999999999874422 12336789999999999999999999999999999998876 332
Q ss_pred -EEeecCCCeEEEEeeCCc-------eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCC
Q 046871 337 -LLCTGEHPILQLALHDDN-------IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRF 408 (764)
Q Consensus 337 -~~~~~~~~V~~l~~spd~-------l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 408 (764)
...+...+|+++++.|-. +++|...|.|.+|.......+.... .|. +.
T Consensus 658 ~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~----------~~~--------------~~ 713 (764)
T KOG1063|consen 658 FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG----------TFN--------------LD 713 (764)
T ss_pred hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce----------eee--------------ec
Confidence 345567889999987643 6888899999999865322111110 010 11
Q ss_pred CCCCccccCCCCceEeEEecC----------CcEEEEeeCCCcEEEEEcc
Q 046871 409 KEPNFTIPGIPGIVQHEILNN----------RRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 409 ~~~~~~i~g~~~i~~~~~s~d----------g~~l~t~s~dG~V~lWdi~ 448 (764)
......+....+|.++.|.|- ...|++|++|-++|++++.
T Consensus 714 ~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 714 TRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 112223334456777777743 3457999999999999874
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.9e-25 Score=231.19 Aligned_cols=229 Identities=24% Similarity=0.389 Sum_probs=202.5
Q ss_pred eEEEEeCCCcEEEecCCCCCe-----eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcC
Q 046871 97 TLVSCSSDTTLKTWNCSSDGT-----CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~-----~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~ 171 (764)
+|++|+.||.|++|++..... +...+..|.+.|+.++.. .+++.|++++.|-+|++|+.....
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~----------- 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKDN----------- 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecccCc-----------
Confidence 699999999999999754433 467888999999999998 789999999999999999997531
Q ss_pred CcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCc
Q 046871 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM-NDSGNLLVSGGTEKVVRVWDPRTGS 250 (764)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~-sp~g~~l~sgs~dg~I~iwd~~~~~ 250 (764)
......+..|.+.|.|+++ .++..++|+||-|+.|.+||+.++.
T Consensus 107 -----------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 107 -----------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred -----------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 1233457889999999999 7788899999999999999999872
Q ss_pred --eeE--------Eec-cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 251 --KTI--------KLR-GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 251 --~~~--------~l~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
.+. .+. |+.+.|.+++.++.|..|++|+..+.|++||.++.+.+..+++|++.|..+..++||..++++
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~ 231 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA 231 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec
Confidence 222 233 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 320 GRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
|+||+|++||+...+++.++. |...|+++..+|+- +++|+.|+.|..=|+.+.
T Consensus 232 sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 232 SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999988776 67789999999887 999999999999988874
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=206.31 Aligned_cols=284 Identities=18% Similarity=0.245 Sum_probs=211.8
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec--ccccceeEEEEeCCC--eEEEEeCC
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE--SHVDWVNDAVLVGDN--TLVSCSSD 104 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~--~h~~~V~~v~~s~d~--~l~s~s~D 104 (764)
....||.+.|+|++| |.||++|+|++.|++|+||++..-+.+.-+.++ -.-+..+.+.|.||- .++++-..
T Consensus 80 ~~LKgH~~~vt~~~F-----sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF-----SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEE-----cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 344799999999999 899999999999999999999762221111111 112356788999994 67777778
Q ss_pred CcEEEecCCCC--Ceee---------eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 105 TTLKTWNCSSD--GTCI---------RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 105 g~V~vWd~~~~--~~~~---------~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
.++++|.+... +... ..-+.|.-.+..+-.. .++.++++++.|..|.+|++...
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lkGq-------------- 219 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLKGQ-------------- 219 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecCCc--------------
Confidence 88999986432 1111 1122355667777777 78999999999999999999842
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CC-
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR---TG- 249 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~---~~- 249 (764)
.+.........-+..+.+|+|+++++++.--.|++|.+- .|
T Consensus 220 -----------------------------------~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~ 264 (420)
T KOG2096|consen 220 -----------------------------------LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT 264 (420)
T ss_pred -----------------------------------eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc
Confidence 112233334556778899999999999998999999863 22
Q ss_pred ----ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeeeEEE----eeecCceEEEEEcCCCC
Q 046871 250 ----SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-------QRCIHSY----AVHTDSVWALASTPTFS 314 (764)
Q Consensus 250 ----~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-------~~~~~~l----~~h~~~V~~l~~spd~~ 314 (764)
..+..++||...|.+++|+++.+.+++.|.||+++|||+.- .+.+++. ....+.-..+..+|+|+
T Consensus 265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~ 344 (420)
T KOG2096|consen 265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD 344 (420)
T ss_pred hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc
Confidence 45678999999999999999999999999999999999742 2223322 11223345899999999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc-eEEEeCCCcEEEee
Q 046871 315 HVYSGGRDLSLYLTDLATRESLLLCT--GEHPILQLALHDDN-IWVATTDSSVHRWP 368 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~-l~~~s~dg~I~iwd 368 (764)
.|+.+. ...++++..++++....+. |...|.+++|+++| .+..+.|..++++.
T Consensus 345 ~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 345 SLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred EEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 887554 4579999999888766555 67889999999999 66667788888875
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.1e-25 Score=203.86 Aligned_cols=250 Identities=21% Similarity=0.250 Sum_probs=203.3
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-ccceeecccccceeEEEEeC-C-C-eEEEEeCCCc
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-SCSATFESHVDWVNDAVLVG-D-N-TLVSCSSDTT 106 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-~~~~~l~~h~~~V~~v~~s~-d-~-~l~s~s~Dg~ 106 (764)
.++|+.-|..+.. +--|++|||++.|++|+|+.+..... ..+.+|.+|.++|..++|.. . | .|++|+.||.
T Consensus 7 dt~H~D~IHda~l-----DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQL-----DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhh-----hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 3589999998887 46799999999999999999987654 78899999999999999975 3 4 8999999999
Q ss_pred EEEecCCCCCe--eeeeccccCCceEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 107 LKTWNCSSDGT--CIRTLRQHSDYVTCLAAAEKN-SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 107 V~vWd~~~~~~--~~~~l~~h~~~V~~l~~~p~~-~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
|.||.- .+++ .......|...|++++|.|.+ +-.|++++.||.|.+.+.+....
T Consensus 82 VIiWke-~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---------------------- 138 (299)
T KOG1332|consen 82 VIIWKE-ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---------------------- 138 (299)
T ss_pred EEEEec-CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC----------------------
Confidence 999994 4342 344667899999999999643 67889999999999999875200
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC---C-----------CEEEEEeCCCeEEEEeCCCC
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS---G-----------NLLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~---g-----------~~l~sgs~dg~I~iwd~~~~ 249 (764)
.........|.-.|++++|.|. | +.|++|+.|..|+||+..++
T Consensus 139 -----------------------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 139 -----------------------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred -----------------------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 1112335678889999999885 4 56999999999999998876
Q ss_pred --ceeEEeccCCcCeEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--e-eeEEEeeecCceEEEEEcCCCCEEEEec
Q 046871 250 --SKTIKLRGHTDNIRSLLLDSTG----RYCLSGSSDSMIRLWDLGQQ--R-CIHSYAVHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 250 --~~~~~l~~h~~~V~~l~~spdg----~~l~sgs~Dg~I~iwdl~~~--~-~~~~l~~h~~~V~~l~~spd~~~l~sgs 320 (764)
+....|.+|.+.|+.++|.|.- .+|+++|.||++.||..+.. . ....+......++.+.|+..|+.|+.++
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 3445689999999999999954 47999999999999987521 1 1223344567899999999999999999
Q ss_pred CCCcEEEEeCC
Q 046871 321 RDLSLYLTDLA 331 (764)
Q Consensus 321 ~Dg~I~iwd~~ 331 (764)
.|+.|.+|.-.
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999754
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-23 Score=218.46 Aligned_cols=358 Identities=16% Similarity=0.197 Sum_probs=267.2
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccc-ccceeEEEEeCCCeEEEEeCCCcEEEecCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESH-VDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~ 113 (764)
-++|.|||+ |.+.+.||.+-.||.|.||++... ..+...+.++ ...|.+++|++.++|++.+.+|.|.-||+
T Consensus 25 Ps~I~slA~-----s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl- 97 (691)
T KOG2048|consen 25 PSEIVSLAY-----SHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL- 97 (691)
T ss_pred ccceEEEEE-----eccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec-
Confidence 468999999 788889999999999999999874 4556666666 45799999998889999999999999998
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
.+.+....+....+.|++++.+ +.+..++.|+.||.+..++...+....
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~------------------------------ 146 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITY------------------------------ 146 (691)
T ss_pred ccCceeEEecCCCcceeEEEeC-CccceEEeecCCceEEEEecCCceEEE------------------------------
Confidence 5577888888888999999999 678899999999977777776531110
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec--------cCCcCeEEE
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR--------GHTDNIRSL 265 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~--------~h~~~V~~l 265 (764)
...+...++.|.+++|+|++..|++|+.||.|++||...+..+.... +...-|.++
T Consensus 147 ----------------~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 147 ----------------KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred ----------------EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence 11233447889999999999999999999999999999987766221 122346677
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE-----Eee
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL-----LCT 340 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~-----~~~ 340 (764)
.|-.++ .|++|.+-|+|.+||...+..++.+..|...|.+++..+++.++++++.|+.|..+...+..... ...
T Consensus 211 ~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 211 LFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred EEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 776554 78999999999999999999999999999999999999999999999999999999987764421 223
Q ss_pred cCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceec-ccccccccc----ccCCCCCccc---------
Q 046871 341 GEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAG-NLSFSRARV----SLEGSTPVSS--------- 406 (764)
Q Consensus 341 ~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~s~~~~----~~~~~~~~~~--------- 406 (764)
|.+.|.+++..++-+++|+.|..+.+-.....+...-.. +...... .+...+... ..+....+|.
T Consensus 290 h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~-~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~ 368 (691)
T KOG2048|consen 290 HAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQ-KNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGE 368 (691)
T ss_pred CcccceeeeeecceEEecceeeEEEEccccccCchhhhc-cccccccceeecCccceEEEEeccccccceeccCcccccc
Confidence 577899999999999999999998887665422111100 0000000 000011000 0011111111
Q ss_pred --CCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 407 --RFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 407 --~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
........+++...|.++++||||++++.+. =..+++|.+..
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~ 412 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQP 412 (691)
T ss_pred cChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEecc
Confidence 1112344667788899999999999998765 33678887764
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=7e-24 Score=212.05 Aligned_cols=276 Identities=16% Similarity=0.246 Sum_probs=225.2
Q ss_pred cceeEEEEeCC-CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 85 DWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 85 ~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
..+.++...+. +.+++|+.|.++.++|. ..++.+.++.+|...|+.+.|+ ++...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFH-KDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEec-cchhheeecCCcceEEeecccccc---
Confidence 35677777776 58999999999999996 5578899999999999999999 788999999999999999987531
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRV 243 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~i 243 (764)
.......|..+|+.+..+|.|.||++++.||+..+
T Consensus 295 ---------------------------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 295 ---------------------------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred ---------------------------------------------CccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 22336779999999999999999999999999999
Q ss_pred EeCCCCceeEEeccC--CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC
Q 046871 244 WDPRTGSKTIKLRGH--TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR 321 (764)
Q Consensus 244 wd~~~~~~~~~l~~h--~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~ 321 (764)
.|++++..+...... .-.+++++|+|||..|.+|+.|+.|+|||+.++..+..|.+|+++|.+++|+.+|-+|++++.
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 999999988776532 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCC--ceeeecCCcceeccccccccc
Q 046871 322 DLSLYLTDLATRESLLLCTG--EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNP--QKVFQRGGSFIAGNLSFSRAR 395 (764)
Q Consensus 322 Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~s~~~ 395 (764)
|+.|++||++.-+....+.. ..++.++.|.+.| +..++.|=.|++++-.+.+- +..+..
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~--------------- 474 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD--------------- 474 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh---------------
Confidence 99999999998887777664 3469999999999 55554444444444332221 111111
Q ss_pred cccCCCCCcccCCCCCCccccCCCC-ceEeEEecCCcEEEEeeCCCcEEEEEc
Q 046871 396 VSLEGSTPVSSRFKEPNFTIPGIPG-IVQHEILNNRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~g~~~-i~~~~~s~dg~~l~t~s~dG~V~lWdi 447 (764)
+.+ ...+.|-.+.+++++++.|..++++-+
T Consensus 475 ----------------------~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 475 ----------------------HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----------------------cccccceeeecccceEEeeccchhheEEeec
Confidence 111 234455567789999999999888754
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.1e-24 Score=220.73 Aligned_cols=280 Identities=19% Similarity=0.313 Sum_probs=233.2
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC-Cccceeec--ccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV-GSCSATFE--SHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~-~~~~~~l~--~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
.|..-|.++++ |...++++|||+ |.|+|||+.... ...+..+. ....-|.++.+.+|+ .|++|+.-.++.
T Consensus 417 ~HGEvVcAvtI-----S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTI-----SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEe-----cCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 47777888887 778899999986 899999997532 22233332 235678889999998 899999999999
Q ss_pred EecCCCCCeeee-eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 109 TWNCSSDGTCIR-TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 109 vWd~~~~~~~~~-~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
|||+......+. .+....-...+++.+ +|.++.+++..||.|.|||+.+.
T Consensus 491 iWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq---------------------------- 541 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQ---------------------------- 541 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccc----------------------------
Confidence 999865433222 333333456678888 78999999999999999999873
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 267 (764)
..+..+++|.+.+.||.++++|..|.+|+.|.+||.||+++++.+.+.. ..+.|.++-+
T Consensus 542 --------------------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 542 --------------------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred --------------------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 3445689999999999999999999999999999999999998776654 5678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEE
Q 046871 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347 (764)
Q Consensus 268 spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~ 347 (764)
+|++.++++|-.++.+.|... ++...+.+..|..-|.++.|.+.|+++++.+.|+.+..|...-|..+...+...+|.+
T Consensus 601 cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVls 679 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 679 (705)
T ss_pred CCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCccee
Confidence 999999999999999888876 3445566777999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCc--eEEEeCCCcEEEeeC
Q 046871 348 LALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 348 l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
+.++.|. |++|+.|....+|.+
T Consensus 680 CDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeccCceEEEecCCCcceEEEEE
Confidence 9999887 888999988888764
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=4.8e-22 Score=202.23 Aligned_cols=392 Identities=14% Similarity=0.229 Sum_probs=257.4
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-ccceeeccc-ccceeEEEEeCCCeEEEEeCCCcEEEecCC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-SCSATFESH-VDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-~~~~~l~~h-~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~ 113 (764)
..|....|.| .+.+++++++ .|.+..|+.+.+.. +....|+.+ ..-|.|++|.+++.+++|.++|.|.||+.
T Consensus 201 e~v~~a~FHP----td~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~- 274 (626)
T KOG2106|consen 201 EVVFLATFHP----TDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSK- 274 (626)
T ss_pred ceEEEEEecc----CCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeC-
Confidence 3455666643 2445666666 48999999987432 122334433 36799999999999999999999999996
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
...+..+....|.+.|.+++.. .++.+| +|+.|+.|..|| ..-.......-.........+...... ..++
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d------i~vG 345 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCML-RDGTLL-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD------ILVG 345 (626)
T ss_pred CCceEEeEeeecCCceEEEEEe-cCccEe-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc------EEEe
Confidence 4455555555999999999998 666555 599999999999 322222211111111111111111110 1222
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCE
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY 273 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 273 (764)
...+..+.-.... .......+|......++.+|+.+++++++.|+.+++|+ ..+.+.... -.+++.|+.|+|.| .
T Consensus 346 TtrN~iL~Gt~~~-~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~ 420 (626)
T KOG2106|consen 346 TTRNFILQGTLEN-GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-V 420 (626)
T ss_pred eccceEEEeeecC-CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-e
Confidence 2222222222222 22334578899999999999999999999999999999 445555443 46789999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-EEEEee--cCCCeEEEEe
Q 046871 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCT--GEHPILQLAL 350 (764)
Q Consensus 274 l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~--~~~~V~~l~~ 350 (764)
++.|+..|...+.|.++...+..-.. +.+++++.|+|+|.+||.|+.|+.|++|.+.... ...... +..+|+.+.|
T Consensus 421 va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 99999999999999998665555544 8899999999999999999999999999987543 332222 3489999999
Q ss_pred eCCc--eEEEeCCCcEEEeeCCCCCCceeee-----------------cCCcceeccccccccccc-----cCCCCCcc-
Q 046871 351 HDDN--IWVATTDSSVHRWPAEGRNPQKVFQ-----------------RGGSFIAGNLSFSRARVS-----LEGSTPVS- 405 (764)
Q Consensus 351 spd~--l~~~s~dg~I~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~s~~~~~-----~~~~~~~~- 405 (764)
++|+ +.+-+.|-.|-.|....-+.....+ +.++.....++.+..... ..|...+.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred cCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 9999 7777889999999443322211111 011111111111111111 11111111
Q ss_pred ---cCCCCCCccccCCCC-ceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 406 ---SRFKEPNFTIPGIPG-IVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 406 ---~~~~~~~~~i~g~~~-i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
.....+.....|+++ +..++|+.+..++++.+.|..|..|++.
T Consensus 580 yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~lv 626 (626)
T KOG2106|consen 580 YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRLV 626 (626)
T ss_pred cccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEeC
Confidence 011122233344544 7888999999999998899999999873
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=216.54 Aligned_cols=278 Identities=21% Similarity=0.277 Sum_probs=216.5
Q ss_pred CcEEEecCCCCCeeeeecccc-CCceEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC
Q 046871 105 TTLKTWNCSSDGTCIRTLRQH-SDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 105 g~V~vWd~~~~~~~~~~l~~h-~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
.++.+||+. ++....++++. ...-.++... +..+++++.. ...|.+|.+......
T Consensus 18 ~~~~~~dl~-TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~-------------------- 74 (476)
T KOG0646|consen 18 INCIVWDLR-TGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQV-------------------- 74 (476)
T ss_pred cceeEEecC-CCceeEEecCcccccchhhhhh--chhheeeecccCccccccccCchhhh--------------------
Confidence 459999984 46655566544 2222233332 2455655554 447888888653111
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCe
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNI 262 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V 262 (764)
....--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|
T Consensus 75 ----------------------------~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~I 126 (476)
T KOG0646|consen 75 ----------------------------VQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSI 126 (476)
T ss_pred ----------------------------hhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccce
Confidence 1122346889999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCeeeEEEeeecCceEEEEEcCC--CCEEEEecCCCcEEEEeCC
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLG---------QQRCIHSYAVHTDSVWALASTPT--FSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~---------~~~~~~~l~~h~~~V~~l~~spd--~~~l~sgs~Dg~I~iwd~~ 331 (764)
+++.|+.||.+|++|+.||.|.+|++. +-++++.|..|+-+|+.+...+. ..+++|+|.|.++++||+.
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 999999999999999999999999862 34678899999999999998654 5789999999999999999
Q ss_pred CCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCcee--eecCCcceeccccccccccccCCCCCcccC
Q 046871 332 TRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKV--FQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 332 ~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
.+..+..+..+.++.+++.+|.. +++|+.+|.|.+.++........ ... .+. .
T Consensus 207 ~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k---------~~~--------------~ 263 (476)
T KOG0646|consen 207 LGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK---------GRH--------------E 263 (476)
T ss_pred cceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc---------ccc--------------c
Confidence 99999999999999999999998 99999999999988875432111 000 000 1
Q ss_pred CCCCCccccCC---CCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 408 FKEPNFTIPGI---PGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 408 ~~~~~~~i~g~---~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.......+.|+ .+|++++++-||..|++|+.||.|+|||+.+.++++++
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 11111122222 46999999999999999999999999999999999887
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.4e-24 Score=218.31 Aligned_cols=282 Identities=17% Similarity=0.296 Sum_probs=233.0
Q ss_pred cccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC--eeeeeccc--cCCceEEEEEecCCCcEEEEEeCCCeEEEEe
Q 046871 81 ESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG--TCIRTLRQ--HSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~--~~~~~l~~--h~~~V~~l~~~p~~~~~lasg~~dg~I~iwd 155 (764)
-.|..-|.++..+... ++++|+. |.|+|||+...+ ..+..+.. ...+|.++... +|++.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCCceEEeccccceeeeee
Confidence 3588888888888765 6777765 789999985543 23333332 45789999999 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE
Q 046871 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235 (764)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 235 (764)
+.......+ ..+....-..++++.+||.+..+++
T Consensus 494 LAapTprik----------------------------------------------aeltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 494 LAAPTPRIK----------------------------------------------AELTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred ccCCCcchh----------------------------------------------hhcCCcchhhhhhhcCCccceeeee
Confidence 986422111 1122233457899999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCE
Q 046871 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSH 315 (764)
Q Consensus 236 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~ 315 (764)
+.||.|.|||+++...++.|++|++.+.||.+++||..|.+|+-|++||.||+++++.++... ....|.++..+|++.+
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dW 606 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDW 606 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccc
Confidence 999999999999999999999999999999999999999999999999999999998777654 4578999999999999
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccc
Q 046871 316 VYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSR 393 (764)
Q Consensus 316 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~ 393 (764)
++.|-.++.+.+-.....+..++..|+..|.++.|.+-| +++.+.|+-+..|...-+..+...
T Consensus 607 lavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs--------------- 671 (705)
T KOG0639|consen 607 LAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--------------- 671 (705)
T ss_pred eeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec---------------
Confidence 999999999999999888888888899999999999999 677778999999987665433221
Q ss_pred cccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 394 ARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
+..+.|.+|.+|.|.++++||+.|..-.||.+.
T Consensus 672 ----------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 672 ----------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ----------------------cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 123457888999999999999999988888763
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.6e-23 Score=188.64 Aligned_cols=251 Identities=25% Similarity=0.326 Sum_probs=203.6
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCc---cceeecccccceeEEEEeCC----C-eEEEEe-
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS---CSATFESHVDWVNDAVLVGD----N-TLVSCS- 102 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~---~~~~l~~h~~~V~~v~~s~d----~-~l~s~s- 102 (764)
.-|++.|.|.+| ||+|++|++|+.|.+|++.-++.+... ....|.-|.+.|.+++|..+ + .|++++
T Consensus 86 khhkgsiyc~~w-----s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 86 KHHKGSIYCTAW-----SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred cccCccEEEEEe-----cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 358999999999 899999999999999999877653222 23457789999999999855 2 566654
Q ss_pred CCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC
Q 046871 103 SDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
.|..|++-|. ..++..+.+.+|.+-|.++-- -++-++++|+.|.+|++||++-............
T Consensus 161 gdc~iy~tdc-~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------------ 225 (350)
T KOG0641|consen 161 GDCKIYITDC-GRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------------ 225 (350)
T ss_pred CcceEEEeec-CCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccceeeeccCccc------------
Confidence 3677888786 568889999999999988743 3589999999999999999985432221110000
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCe
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNI 262 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V 262 (764)
--.-..+.|.+++..|.|++|++|-.|....+||++.++.++.+..|+..|
T Consensus 226 -----------------------------~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi 276 (350)
T KOG0641|consen 226 -----------------------------DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI 276 (350)
T ss_pred -----------------------------CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce
Confidence 001124679999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQ----QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~~----~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
+++.|+|...++++|+.|..|++-|++. .-++.....|.+.+..+.|+|..--|++.+.|.++.+|-+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999999853 22345566799999999999998889999999999999763
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=3.4e-24 Score=216.57 Aligned_cols=250 Identities=20% Similarity=0.314 Sum_probs=203.9
Q ss_pred cccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeee---------eeccccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 81 ESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCI---------RTLRQHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~---------~~l~~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
-.|.+.|+.+.+.|++ .+++.+..+.|.|||........ ..+.+|...-..++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3588999999999986 67788889999999975433222 267889887788999988888999999999
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-C
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-S 228 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~ 228 (764)
.|++||+.......+. -.....+.+|...|..++|++ +
T Consensus 201 ~i~lwdi~~~~~~~~~-----------------------------------------~~p~~~~~~h~~~VeDV~~h~~h 239 (422)
T KOG0264|consen 201 TICLWDINAESKEDKV-----------------------------------------VDPKTIFSGHEDVVEDVAWHPLH 239 (422)
T ss_pred cEEEEeccccccCCcc-----------------------------------------ccceEEeecCCcceehhhccccc
Confidence 9999999864221000 112345789999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEeCC--CCceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-eeeEEEeeecCce
Q 046871 229 GNLLVSGGTEKVVRVWDPR--TGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQ-RCIHSYAVHTDSV 304 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~-~~~~~l~~h~~~V 304 (764)
..++++++.|+.+.|||+| +.+......+|.+.|.|++|+| ++..||+||.|++|++||+++. ++++++.+|.+.|
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 6788999999999999999 5566777889999999999999 5567889999999999999874 5789999999999
Q ss_pred EEEEEcCCC-CEEEEecCCCcEEEEeCCCCe------------EEEEee---cCCCeEEEEeeCCc---eEEEeCCCcEE
Q 046871 305 WALASTPTF-SHVYSGGRDLSLYLTDLATRE------------SLLLCT---GEHPILQLALHDDN---IWVATTDSSVH 365 (764)
Q Consensus 305 ~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~------------~~~~~~---~~~~V~~l~~spd~---l~~~s~dg~I~ 365 (764)
.++.|+|+. ..|++++.|+.+.+||+..-. +-..+. |...|..+.|+|.. |++++.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999965 567899999999999986321 112233 45679999999998 88899999999
Q ss_pred EeeCCC
Q 046871 366 RWPAEG 371 (764)
Q Consensus 366 iwd~~~ 371 (764)
||+...
T Consensus 400 IW~~s~ 405 (422)
T KOG0264|consen 400 IWQMAE 405 (422)
T ss_pred Eeeccc
Confidence 998763
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.6e-24 Score=197.49 Aligned_cols=244 Identities=23% Similarity=0.306 Sum_probs=198.0
Q ss_pred cccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC--eeeeeccccCCceEEEEEe-cCCCcEEEEEeCCCeEEEEeC
Q 046871 81 ESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG--TCIRTLRQHSDYVTCLAAA-EKNSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~--~~~~~l~~h~~~V~~l~~~-p~~~~~lasg~~dg~I~iwdl 156 (764)
..|.+.|.++...--| +|++|++|++|+|+....++ ..+.++.+|.++|+.++|. |.-+.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688888877665445 89999999999999987666 5788999999999999996 446899999999999999998
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--CCEEEE
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--GNLLVS 234 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g~~l~s 234 (764)
.++. -........|..+|++++|.|. |-.|++
T Consensus 88 ~~g~----------------------------------------------w~k~~e~~~h~~SVNsV~wapheygl~Lac 121 (299)
T KOG1332|consen 88 ENGR----------------------------------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLAC 121 (299)
T ss_pred CCCc----------------------------------------------hhhhhhhhhhcccceeecccccccceEEEE
Confidence 7641 1112335679999999999884 568999
Q ss_pred EeCCCeEEEEeCCCC---ceeEEeccCCcCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCC--eeeE
Q 046871 235 GGTEKVVRVWDPRTG---SKTIKLRGHTDNIRSLLLDST---G-----------RYCLSGSSDSMIRLWDLGQQ--RCIH 295 (764)
Q Consensus 235 gs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~spd---g-----------~~l~sgs~Dg~I~iwdl~~~--~~~~ 295 (764)
++.||.|.|.+.+.. ........|.-.|++++|.|. | +.|++|+.|..|+||+..++ +.-+
T Consensus 122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~ 201 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER 201 (299)
T ss_pred eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh
Confidence 999999999988754 223345679999999999985 4 57999999999999998775 3445
Q ss_pred EEeeecCceEEEEEcCCC----CEEEEecCCCcEEEEeCCCCe----EEEEeecCCCeEEEEeeCCc--eEEEeCCCcEE
Q 046871 296 SYAVHTDSVWALASTPTF----SHVYSGGRDLSLYLTDLATRE----SLLLCTGEHPILQLALHDDN--IWVATTDSSVH 365 (764)
Q Consensus 296 ~l~~h~~~V~~l~~spd~----~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~ 365 (764)
+|.+|.+.|..++|.|.- .+|++++.||++.||..+... ...+-.....+..+.|+..| |++++.|+.|.
T Consensus 202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 689999999999999964 579999999999999876321 11122246789999999999 88888999999
Q ss_pred EeeCC
Q 046871 366 RWPAE 370 (764)
Q Consensus 366 iwd~~ 370 (764)
+|.-+
T Consensus 282 lwke~ 286 (299)
T KOG1332|consen 282 LWKEN 286 (299)
T ss_pred EEEeC
Confidence 99754
No 123
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=7.2e-22 Score=207.93 Aligned_cols=272 Identities=16% Similarity=0.138 Sum_probs=204.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE-EEEeCCCcEEEecCCCCCeeeeeccccCCceE
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL-VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVT 130 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~ 130 (764)
..+++++.|+.|++||+.+ ++....+..|.. +.+++|++++ .+ ++++.++.|++||. ..++....+..+.. +.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t--~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~-~~ 76 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT--LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDL-ATGEVIGTLPSGPD-PE 76 (300)
T ss_pred cEEEEecCCCEEEEEECCC--CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEEC-CCCcEEEeccCCCC-cc
Confidence 5788999999999999987 556777776544 6789999997 44 56778899999997 44666666655443 46
Q ss_pred EEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcc
Q 046871 131 CLAAAEKNSNIV-ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV 209 (764)
Q Consensus 131 ~l~~~p~~~~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 209 (764)
.++|+ ++++.+ ++++.++.|++||+.+....
T Consensus 77 ~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~----------------------------------------------- 108 (300)
T TIGR03866 77 LFALH-PNGKILYIANEDDNLVTVIDIETRKVL----------------------------------------------- 108 (300)
T ss_pred EEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEE-----------------------------------------------
Confidence 78898 566655 45567899999999763111
Q ss_pred ceeccCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE-eCCCcEEEEe
Q 046871 210 PIAAKGHKESVYALAMNDSGNLLVSGGTEK-VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG-SSDSMIRLWD 287 (764)
Q Consensus 210 ~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwd 287 (764)
..+ .+...+.+++|+|+|++++++..++ .+.+||..+++....+. ......+++|++++++|+++ ..++.|++||
T Consensus 109 -~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 109 -AEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred -eEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 011 1123357799999999999988765 56788998887766543 23456789999999988654 4699999999
Q ss_pred CCCCeeeEEEeeecC-------ceEEEEEcCCCCEEEE-ecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEE
Q 046871 288 LGQQRCIHSYAVHTD-------SVWALASTPTFSHVYS-GGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWV 357 (764)
Q Consensus 288 l~~~~~~~~l~~h~~-------~V~~l~~spd~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~ 357 (764)
+.+++++..+..+.. ....++|+|++++++. .+.++.|.+||+.+++.+........+.+++|+|++ |++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 999988777653321 2346889999998654 455678999999998887766666789999999999 666
Q ss_pred E-eCCCcEEEeeCCCCCCceeeec
Q 046871 358 A-TTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 358 ~-s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
+ ..++.|.+||+.+++.+..++.
T Consensus 266 ~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 266 TNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEEc
Confidence 5 4589999999999998887764
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=8e-23 Score=194.83 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=218.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEec
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd 111 (764)
.-|.++|++|.+++ ..|+|+++|+.||.|.+||++.... .+. .++++ ..+++
T Consensus 40 r~HgGsvNsL~id~----tegrymlSGgadgsi~v~Dl~n~t~-----~e~------------s~li~-----k~~c~-- 91 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL----TEGRYMLSGGADGSIAVFDLQNATD-----YEA------------SGLIA-----KHKCI-- 91 (397)
T ss_pred ccCCCccceeeecc----ccceEEeecCCCccEEEEEeccccc-----hhh------------cccee-----heeee--
Confidence 57999999999975 5799999999999999999986221 110 01111 11111
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+.. ..-.+|.-.|..+.|.|-|..+|.+++.|.++++||.++....
T Consensus 92 v~~-----~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a----------------------------- 137 (397)
T KOG4283|consen 92 VAK-----QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA----------------------------- 137 (397)
T ss_pred ccc-----cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee-----------------------------
Confidence 101 1123588889999999999999999999999999999874211
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND---SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp---~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
....-.+.|++-+++| ...++|+|..+-.|++.|+.+|...+.+.||.+.|.++.|+
T Consensus 138 --------------------~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 138 --------------------VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred --------------------EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 1122366788888888 34578888899999999999999999999999999999999
Q ss_pred CCCCE-EEEEeCCCcEEEEeCCCC-eeeEEEe--------------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 269 STGRY-CLSGSSDSMIRLWDLGQQ-RCIHSYA--------------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 269 pdg~~-l~sgs~Dg~I~iwdl~~~-~~~~~l~--------------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
|...+ |++|+.||.|++||++.. -|...+. .|.+.|..++|..++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 98876 779999999999999754 4444443 4667799999999999999999999999999988
Q ss_pred CeEEEEee----cC---CCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCC
Q 046871 333 RESLLLCT----GE---HPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTP 403 (764)
Q Consensus 333 ~~~~~~~~----~~---~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 403 (764)
|+....-. ++ +.-..+. +.+. ++.--.++.+.++++-++..++.+..|..
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k-------------------- 336 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK-------------------- 336 (397)
T ss_pred CcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--------------------
Confidence 86432211 11 1111122 2222 33334457888888887777766665421
Q ss_pred cccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 404 VSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 404 ~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
.+.+.++-+|=+...+++.||.|..|-..
T Consensus 337 ----------------~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 337 ----------------RINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ----------------eeeEEeecCchhhhhccccCCcccccccc
Confidence 13344555666788999999999999874
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=220.87 Aligned_cols=249 Identities=20% Similarity=0.312 Sum_probs=212.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC----CeEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD----NTLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d----~~l~s~s~Dg~V~ 108 (764)
+-+.+|.|+++ ||+|++||+|.+-|.++||++.. .+....++.|...|.|+.|+.. .+|++++.|..|.
T Consensus 457 d~r~G~R~~~v-----Sp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 457 DSRFGFRALAV-----SPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred CcccceEEEEE-----CCCcceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 45778999999 89999999999999999999988 6777888999999999999853 2799999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCC--cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNS--NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
|+|...+..+++++.+|...|+++.|. -++ ..++++|.|+.|.+ +.......
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa-~~gln~~MiscGADksimF-r~~qk~~~------------------------ 583 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFA-CNGLNRKMISCGADKSIMF-RVNQKASS------------------------ 583 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEe-ecCCceEEEeccCchhhhe-ehhccccC------------------------
Confidence 999977778899999999999999998 444 67889999986654 33321000
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc---CCcCeE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG---HTDNIR 263 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~ 263 (764)
+. ++ ........+..+|.++..|..+++++++.|..|+|||+.+++....|++ |.+..-
T Consensus 584 ---------g~--~f-------~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 584 ---------GR--LF-------PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred ---------ce--ec-------cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 00 00 0011122356799999999999999999999999999999999999975 556778
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
.+...|.|.||++.+.|.++.++|..+++|+.++.+|...|+.+.|.+|.++|++.+.||.|.||.+..
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 888999999999999999999999999999999999999999999999999999999999999999864
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3e-22 Score=192.99 Aligned_cols=263 Identities=15% Similarity=0.198 Sum_probs=207.8
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~ 162 (764)
.+.|.++.|+|.+ .|+.++.||++++|+... . .+...-.|..++.+++|. +...+++|+.||.|+.+|++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-~-~l~~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-N-SLKLKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccc-h-hhhhheecCCceeeeecc--CCceEEEeccCceEEEEEecCCc--
Confidence 6789999999774 888888999999999743 2 344444589999999998 36788999999999999998742
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVR 242 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~ 242 (764)
...+..|...|.|+.+++....+++|+.|+.|+
T Consensus 87 -----------------------------------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik 119 (323)
T KOG1036|consen 87 -----------------------------------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIK 119 (323)
T ss_pred -----------------------------------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEE
Confidence 123667899999999999888999999999999
Q ss_pred EEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe--eecCceEEEEEcCCCCEEEEec
Q 046871 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA--VHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 243 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~--~h~~~V~~l~~spd~~~l~sgs 320 (764)
+||.+.......+. ....|.++..+ |+.|++|+.|..+.+||+++.....+.. .-.-.+.++++.|++.-+++++
T Consensus 120 ~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 120 FWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred EEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 99999866655555 34478888776 8899999999999999998765443222 1234588999999988899999
Q ss_pred CCCcEEEEeCCCCe----EEEEee-c---------CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcc
Q 046871 321 RDLSLYLTDLATRE----SLLLCT-G---------EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 321 ~Dg~I~iwd~~~~~----~~~~~~-~---------~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
-||.|.+=.+...+ ....+. | -.||++++|+|-. +++|+.||.|.+||+...+.+..+...
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--- 273 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--- 273 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC---
Confidence 99999987776552 111221 1 2479999999997 999999999999999988776665432
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeC
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA 438 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~ 438 (764)
...|..++|+.||..||+++.
T Consensus 274 ---------------------------------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 274 ---------------------------------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ---------------------------------CCceEEEEeccCCCeEEEEec
Confidence 123667888899999998875
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-22 Score=217.71 Aligned_cols=262 Identities=16% Similarity=0.244 Sum_probs=216.8
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNC 112 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~ 112 (764)
+|+.+-+.|++ .++|..|++++.||.|++|+..... ..-.++.-+...|.+++... ++|++|+.+++|.+|.+
T Consensus 11 aht~G~t~i~~-----d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICY-----DPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEE-----cCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeecc-cceEEeeccceEEEeeC
Confidence 69999999999 6899999999999999999987642 22333344777788776644 38999999999999998
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
.. +..-..+....-++.+++|+ .++.++|.|+.|-.|++-++.+.
T Consensus 84 ps-~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~--------------------------------- 128 (933)
T KOG1274|consen 84 PS-GEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDS--------------------------------- 128 (933)
T ss_pred CC-CCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecccc---------------------------------
Confidence 43 44444555567789999999 88999999999999999998763
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccC--------CcCeEE
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH--------TDNIRS 264 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h--------~~~V~~ 264 (764)
.....+.+|.++|.++.|+|.+++||+.+-||.|++||+.++.....+.+- ...+..
T Consensus 129 ---------------s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~ 193 (933)
T KOG1274|consen 129 ---------------SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR 193 (933)
T ss_pred ---------------chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence 233458899999999999999999999999999999999999877666431 345677
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee--ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV--HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE 342 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~--h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 342 (764)
++|+|+|..++..+.|+.|++|+...+.....+.. +...+..++|+|.|+|||+++.||.|.|||.++-+. ....
T Consensus 194 ~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~ 270 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFK 270 (933)
T ss_pred eeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---cccc
Confidence 89999998999999999999999999988887763 444599999999999999999999999999998322 2335
Q ss_pred CCeEEEEeeCCc
Q 046871 343 HPILQLALHDDN 354 (764)
Q Consensus 343 ~~V~~l~~spd~ 354 (764)
..|.+++|.|+.
T Consensus 271 ~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 271 RAVCCEAWKPNA 282 (933)
T ss_pred ceeEEEecCCCC
Confidence 679999999987
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.1e-22 Score=192.31 Aligned_cols=276 Identities=20% Similarity=0.239 Sum_probs=205.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC--CCCccceeecccccceeEEEEeCC--C-eEEEEeCCCc
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD--DVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTT 106 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~--~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~ 106 (764)
.||.+-|+|+.| ++-|+++|||+.|++|+|||... +...+....+.|.+.|..+.|.+- | .+++|+.|++
T Consensus 10 s~h~DlihdVs~-----D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 10 SGHKDLIHDVSF-----DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred cCCcceeeeeee-----cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 589999999999 68899999999999999999754 345677788999999999999754 4 7899999999
Q ss_pred EEEecCCCC-----C---eeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 107 LKTWNCSSD-----G---TCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 107 V~vWd~~~~-----~---~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
+.||.=... + ....++......|+.+.|.|. -+-.+|+++.||.++||+.........
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------- 151 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------- 151 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-------------
Confidence 999973111 1 223456667789999999963 477899999999999999865322111
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCC-CccceeccCCCCcEEEEEEcCC---CCEEEEEeCC-----CeEEEEeCCC
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQ-GYVPIAAKGHKESVYALAMNDS---GNLLVSGGTE-----KVVRVWDPRT 248 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~V~~l~~sp~---g~~l~sgs~d-----g~I~iwd~~~ 248 (764)
|..+.. ...+.....+..+..|+.|+|. ..+|+.|+.+ +.+.||....
T Consensus 152 -----------------------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 152 -----------------------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred -----------------------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 111000 0011123356677889999973 4678888776 4788886544
Q ss_pred C----ceeEEeccCCcCeEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--------------------eeeEEEeee
Q 046871 249 G----SKTIKLRGHTDNIRSLLLDSTG----RYCLSGSSDSMIRLWDLGQQ--------------------RCIHSYAVH 300 (764)
Q Consensus 249 ~----~~~~~l~~h~~~V~~l~~spdg----~~l~sgs~Dg~I~iwdl~~~--------------------~~~~~l~~h 300 (764)
+ ..+.++.+|+++|++|+|.|+- ..|++++.|| |+||.++.. +.+..+..|
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 3 3566788999999999999953 4699999999 999998631 235567789
Q ss_pred cCceEEEEEcCCCCEEEEecCCCcEEEEeCC---CCeEEEEeecCCCeEEEE
Q 046871 301 TDSVWALASTPTFSHVYSGGRDLSLYLTDLA---TRESLLLCTGEHPILQLA 349 (764)
Q Consensus 301 ~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~---~~~~~~~~~~~~~V~~l~ 349 (764)
.+.||.+.|+-.|..|.+.|.||.|++|... ..++...+..+..+....
T Consensus 288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~ 339 (361)
T KOG2445|consen 288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPD 339 (361)
T ss_pred CCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcc
Confidence 9999999999999999999999999999753 233444444444443333
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.2e-24 Score=228.04 Aligned_cols=247 Identities=23% Similarity=0.426 Sum_probs=216.8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCc
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY 128 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~ 128 (764)
|...+++.+..+-.+++||... +..|...|.++..-..+ .+++|+.|..+-+|.+.. -.++..+.+|..+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~hesp 72 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTGHESP 72 (825)
T ss_pred Ccccccceeeeeeccccccchh--------hhhhhhhhceeeeeccceeeccCCCceeeccccccC-CchhheeeccCCc
Confidence 3445566677777788888754 35688888888875444 688999999999999743 4556678999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
|.++.|+ ....+|+.|+.+|+|++||++.+ .
T Consensus 73 IeSl~f~-~~E~LlaagsasgtiK~wDleeA------------------------------------------------k 103 (825)
T KOG0267|consen 73 IESLTFD-TSERLLAAGSASGTIKVWDLEEA------------------------------------------------K 103 (825)
T ss_pred ceeeecC-cchhhhcccccCCceeeeehhhh------------------------------------------------h
Confidence 9999999 77899999999999999999863 3
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
....+.+|...+.++.|+|-+.+.+.|+.|+.+.+||++..-+.+.+.+|...+..+.|+|+|+++++++.|.+++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 34468899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN 354 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~ 354 (764)
..|+.+..|..|.+.+.++.|+|..-++++|+.|++|++||+++.+.+.... ....|.++.|+|++
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence 9999999999999999999999999999999999999999999888776555 36789999999999
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.7e-23 Score=219.10 Aligned_cols=283 Identities=18% Similarity=0.307 Sum_probs=217.8
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC--ccceeecc---cccceeEEEEeCC--CeEEEEeCCCcE
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG--SCSATFES---HVDWVNDAVLVGD--NTLVSCSSDTTL 107 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~--~~~~~l~~---h~~~V~~v~~s~d--~~l~s~s~Dg~V 107 (764)
.+..++|+. .++-..++.+|+ ..++|+.++.... .+...+.. -...+.+|.|..- ++|++++..|.|
T Consensus 39 k~~~nAIs~-----nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 39 KAKANAISV-----NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred ccccceEee-----cCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 356777777 477788888886 4888888765322 22222221 1234667888742 489999999999
Q ss_pred EEecCCC--CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 108 KTWNCSS--DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 108 ~vWd~~~--~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
.+||+.. ..+.+..+..|...++++.|++...++|++|+.||.|++||++....
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S------------------------ 168 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS------------------------ 168 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc------------------------
Confidence 9999855 24556688999999999999988899999999999999999986421
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeE
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIR 263 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~ 263 (764)
.....+...+|..+.|+| .+..++++.+.|.+++||++.. ++..++..|.++|.
T Consensus 169 ------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 169 ------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred ------------------------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 123455678899999999 6789999999999999999876 56778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-cCceEEEEEcCCCCE-EEEec--CCCcEEEEeCCCCeE-EEE
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-TDSVWALASTPTFSH-VYSGG--RDLSLYLTDLATRES-LLL 338 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-~~~V~~l~~spd~~~-l~sgs--~Dg~I~iwd~~~~~~-~~~ 338 (764)
++.|+|++.+||||+.|++|+|||+.+.+.......+ ..+|.++.|-|...+ |++++ .|-.|+|||++..-. ...
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence 9999999999999999999999999876544433333 357999999997765 55554 477899999986543 333
Q ss_pred e-ecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCC
Q 046871 339 C-TGEHPILQLALHDDN---IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 339 ~-~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~ 371 (764)
+ .|...++.++|.... +++++.|++|..-.++.
T Consensus 305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 3 366778889996632 89999999886655544
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.6e-22 Score=199.62 Aligned_cols=303 Identities=13% Similarity=0.180 Sum_probs=237.3
Q ss_pred CCCCccceeeEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEE
Q 046871 12 NSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAV 91 (764)
Q Consensus 12 ~~~~p~~~~~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~ 91 (764)
+...|.+.-.+.-+.......--.++|+|+.| +|...+|+++|.||+++||.++......++.+.-...+|.+.+
T Consensus 190 s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~F-----Hp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~ 264 (514)
T KOG2055|consen 190 SKLLPPGTLNIKRLKDANAAHPSHGGITSVQF-----HPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE 264 (514)
T ss_pred cccCCCceeeeEeecccccCCcCcCCceEEEe-----cCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee
Confidence 34455544444433332222233569999999 6888999999999999999998776777888877789999999
Q ss_pred EeCCC--eEEEEeCCCcEEEecCCCCCe--eeeeccccC-CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 046871 92 LVGDN--TLVSCSSDTTLKTWNCSSDGT--CIRTLRQHS-DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSG 166 (764)
Q Consensus 92 ~s~d~--~l~s~s~Dg~V~vWd~~~~~~--~~~~l~~h~-~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~ 166 (764)
|.|+| .+++++....++.||+.. .+ .+....++. ..+.....+ +++++|+..|..|.|.+....++....
T Consensus 265 f~p~G~~~i~~s~rrky~ysyDle~-ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~--- 339 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRRKYLYSYDLET-AKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELIT--- 339 (514)
T ss_pred ecCCCceEEEecccceEEEEeeccc-cccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhh---
Confidence 99997 688889999999999843 33 233344444 356677788 789999999999999998877642221
Q ss_pred CCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 046871 167 DAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDP 246 (764)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~ 246 (764)
...-.+.|..++|+.+++.|++.+.+|.|.+||+
T Consensus 340 ----------------------------------------------s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 340 ----------------------------------------------SFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ----------------------------------------------eeeeccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence 1123677999999999999999999999999999
Q ss_pred CCCceeEEeccCCc-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeeeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 247 RTGSKTIKLRGHTD-NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ------QRCIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 247 ~~~~~~~~l~~h~~-~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~------~~~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
+...+++.+....+ .-++++.++++.+|++||..|.|.|||..+ .+++.++..-...|++|.|++|.+.|+.+
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 99999998874322 346788889999999999999999999643 56777787778899999999999999877
Q ss_pred cC--CCcEEEEeCCCCeEEEEeec----CCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 320 GR--DLSLYLTDLATRESLLLCTG----EHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 320 s~--Dg~I~iwd~~~~~~~~~~~~----~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
|+ +..+++-.+.+.....-++. -+.|+|++|+|.+ +++|..+|.+.+|.+.
T Consensus 454 S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 65 56899988877666555543 2458999999976 9999999999999874
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=210.37 Aligned_cols=300 Identities=18% Similarity=0.265 Sum_probs=213.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCc----cceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeee--cc
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVGS----CSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRT--LR 123 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~~----~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~--l~ 123 (764)
....||.+..||.|.++|......+ ....+..|...|.++.|.|.. .|++++.|.++++||+ ....+... +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV-KTSRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee-ccceeecceeec
Confidence 4568999999999999998763322 234567899999999999954 8999999999999997 45666554 88
Q ss_pred ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccccc
Q 046871 124 QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTS 203 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 203 (764)
+|.+.|.+++|.+.+...|++|+.||.|.|||++-.... ..+..+...... .+.. -...
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d-----~~e~~~~~~~~~---------------~n~~-ptps 200 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD-----ALEEFDNRIYGR---------------HNTA-PTPS 200 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh-----hHHHHhhhhhcc---------------ccCC-CCCC
Confidence 999999999999999999999999999999999854211 000000000000 0000 0000
Q ss_pred CCCCccceeccCCCCcEEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEE--------eccC---CcCeEEEEEc
Q 046871 204 QSQGYVPIAAKGHKESVYA---LAMNDSGNLLVSGGT-EKVVRVWDPRTGSKTIK--------LRGH---TDNIRSLLLD 268 (764)
Q Consensus 204 ~~~~~~~~~~~~~~~~V~~---l~~sp~g~~l~sgs~-dg~I~iwd~~~~~~~~~--------l~~h---~~~V~~l~~s 268 (764)
............+...|.+ +.+..|...||+++. |+.|+|||++....... +..| .-.+.++..+
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 0001112223344444544 445567788888877 99999999987654332 2223 3367888888
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC--eeeEEEeeecCce--EEEEEcCCCCEEEEecCCCcEEEEeCCCCeE--EEEeecC
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQ--RCIHSYAVHTDSV--WALASTPTFSHVYSGGRDLSLYLTDLATRES--LLLCTGE 342 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~--~~~~~l~~h~~~V--~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~ 342 (764)
..|.+|++.+.|+.|++||+... .++..+.++...- ..-..+|++.++++|+.|...++|.+.+.+. .....|.
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 88999988888999999999753 3444444443221 1223589999999999999999999987653 3345567
Q ss_pred CCeEEEEeeCCc---eEEEeCCCcEEEeeCCCC
Q 046871 343 HPILQLALHDDN---IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 343 ~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~ 372 (764)
..|++++|.|.. +++++.|..+++|++..+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 789999998876 999999999999999654
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=5.7e-22 Score=190.11 Aligned_cols=257 Identities=16% Similarity=0.292 Sum_probs=201.5
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
..-.+.|.+++|+|....+++.++.|++||+|+++...
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g------------------------------------------ 61 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG------------------------------------------ 61 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCC------------------------------------------
Confidence 34568899999997678888899999999999998621
Q ss_pred cCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC--EEEEEeCC
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR--YCLSGSSD 280 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~sgs~D 280 (764)
.........|.++|.+++|+.||..+++|+.|+.+++||+.++ .+.++..|.++|.++.|-+... .|+|||.|
T Consensus 62 ----~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD 136 (347)
T KOG0647|consen 62 ----QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD 136 (347)
T ss_pred ----cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccc
Confidence 1111335678999999999999999999999999999999999 4566777999999999988665 79999999
Q ss_pred CcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE---eecCCCeEEEEeeCCc--e
Q 046871 281 SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL---CTGEHPILQLALHDDN--I 355 (764)
Q Consensus 281 g~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~V~~l~~spd~--l 355 (764)
.+|+.||++...++.++.. .+.++++..- ..+++.+..++.|.+|+++++..... .+....+.|++...|. .
T Consensus 137 KTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF 213 (347)
T ss_pred cceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce
Confidence 9999999999999998874 4567777653 34677888899999999987643321 1234567888888776 9
Q ss_pred EEEeCCCcEEEeeCCCCCCcee--eecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEE
Q 046871 356 WVATTDSSVHRWPAEGRNPQKV--FQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHV 433 (764)
Q Consensus 356 ~~~s~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l 433 (764)
+.|+.+|.+-|..++.+.+... |+-|.... .......+|..++|.|.-..|
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~---------------------------~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN---------------------------SVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCC---------------------------CCCCceEEecceEeecccceE
Confidence 9999999999999988754333 22221110 000013457788999999999
Q ss_pred EEeeCCCcEEEEEccccEEeeec
Q 046871 434 LTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 434 ~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
+|++.||++.+||-.....++++
T Consensus 267 vTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 267 VTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred EEecCCceEEEecchhhhhhhcc
Confidence 99999999999998877777665
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=190.86 Aligned_cols=282 Identities=16% Similarity=0.240 Sum_probs=217.7
Q ss_pred eeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC
Q 046871 38 INCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~ 116 (764)
-+|+.| |+.|.+||+|..||.|.|||+.+ ....+.+.+|..+|++++|++|| .|+++|.|..|++||+ ..+
T Consensus 26 a~~~~F-----s~~G~~lAvGc~nG~vvI~D~~T--~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl-~~g 97 (405)
T KOG1273|consen 26 AECCQF-----SRWGDYLAVGCANGRVVIYDFDT--FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL-LKG 97 (405)
T ss_pred cceEEe-----ccCcceeeeeccCCcEEEEEccc--cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec-cCC
Confidence 678888 89999999999999999999998 66788899999999999999998 8999999999999998 457
Q ss_pred eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
.+++.+. ...+|+...|+|.+.+.++..-.+..-.+-++..........
T Consensus 98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~------------------------------ 146 (405)
T KOG1273|consen 98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK------------------------------ 146 (405)
T ss_pred CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC------------------------------
Confidence 7777775 577999999998777777776666555565655321100000
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-cCeEEEEEcCCCCEEE
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDSTGRYCL 275 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~ 275 (764)
+. -........+..|.+.|+++++|...|.+.++|..+.+++..++-.. ..|..|.++..|++|+
T Consensus 147 -------d~-------d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li 212 (405)
T KOG1273|consen 147 -------DD-------DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI 212 (405)
T ss_pred -------CC-------ccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE
Confidence 00 00001111223688899999999999999999999999999888666 7899999999999999
Q ss_pred EEeCCCcEEEEeCCCC-------e--eeEEEee--ecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCCCeEEEEeecC-
Q 046871 276 SGSSDSMIRLWDLGQQ-------R--CIHSYAV--HTDSVWALASTPTFSHVYSGG-RDLSLYLTDLATRESLLLCTGE- 342 (764)
Q Consensus 276 sgs~Dg~I~iwdl~~~-------~--~~~~l~~--h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~- 342 (764)
.-+.|..||.|+++.- + +.+.++. ....-.+++|+.+|.|++.++ .-..++||.-..|..+..+.+.
T Consensus 213 iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 213 INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 9999999999998521 1 1111111 112235788999999998766 3567999999999999988864
Q ss_pred -CCeEEEEeeCCc-eEEEeCCCcEEEeeCCCC
Q 046871 343 -HPILQLALHDDN-IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 343 -~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~ 372 (764)
.....+.|+|-. ++..-..|.+++|.....
T Consensus 293 gE~l~DV~whp~rp~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 293 GEELLDVNWHPVRPIIASIASGVVYIWAVVQV 324 (405)
T ss_pred hhheeecccccceeeeeeccCCceEEEEeecc
Confidence 357788999998 555558899999987653
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3e-23 Score=221.18 Aligned_cols=236 Identities=20% Similarity=0.281 Sum_probs=195.9
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC-CCCccceeecccccceeEEEEeCC--CeEEEEeCCCcEEEecCCCCCeeeeeccccC
Q 046871 50 NGVDYLFTGSRDGTLKRWSLAD-DVGSCSATFESHVDWVNDAVLVGD--NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHS 126 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~-~~~~~~~~l~~h~~~V~~v~~s~d--~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~ 126 (764)
-+.++|||++..|.|.+||+.. ...+.+..|..|...|+++.|++. .+|++||.||+|++||+. ......++.+..
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t~~~nS 176 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKSTFRSNS 176 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee-cccccccccccc
Confidence 4568999999999999999986 224556788999999999999976 489999999999999984 456677788889
Q ss_pred CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCC
Q 046871 127 DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQ 206 (764)
Q Consensus 127 ~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 206 (764)
..|..++|+|..++.|+++...|.+.+||++..
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp----------------------------------------------- 209 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP----------------------------------------------- 209 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCc-----------------------------------------------
Confidence 999999999988999999999999999999864
Q ss_pred CccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc-CCcCeEEEEEcCCCCE-EEEEeC--CCc
Q 046871 207 GYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG-HTDNIRSLLLDSTGRY-CLSGSS--DSM 282 (764)
Q Consensus 207 ~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~-l~sgs~--Dg~ 282 (764)
......+.+|.++|.|+.|+|++.+||+||.|+.|+|||+.+++.-....- -..+|..+.|-|+..+ |++++. |-.
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts 289 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS 289 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce
Confidence 223345789999999999999999999999999999999987654333222 3468999999998765 666553 778
Q ss_pred EEEEeCCCC-eeeEEEeeecCceEEEEEc-CCCCEEEEecCCCcEEEEeCCCC
Q 046871 283 IRLWDLGQQ-RCIHSYAVHTDSVWALAST-PTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 283 I~iwdl~~~-~~~~~l~~h~~~V~~l~~s-pd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
|+|||++.. -+..++..|++.++.++|. .|...+.+++.||+|..-.+++.
T Consensus 290 V~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 290 VHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred EEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999999754 4567889999999999994 46677889999999877666554
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-21 Score=200.47 Aligned_cols=364 Identities=18% Similarity=0.220 Sum_probs=255.8
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~ 112 (764)
-...|.+|+| .++.+|++.+.+|.|.-||+.+ .+....+....+.|++++.+|.+ .++.++.||.+...+.
T Consensus 68 ~drsIE~L~W------~e~~RLFS~g~sg~i~EwDl~~--lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~ 139 (691)
T KOG2048|consen 68 EDRSIESLAW------AEGGRLFSSGLSGSITEWDLHT--LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI 139 (691)
T ss_pred CCCceeeEEE------ccCCeEEeecCCceEEEEeccc--CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEec
Confidence 3568999999 3688999999999999999998 77788888889999999999987 7889999997777775
Q ss_pred CCCCee--eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 113 SSDGTC--IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 113 ~~~~~~--~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
..+.. .+.+....+.|.+++|. +++..+++|+.||.|++||...+.....
T Consensus 140 -~p~~I~~~r~l~rq~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-------------------------- 191 (691)
T KOG2048|consen 140 -GPDKITYKRSLMRQKSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTLHI-------------------------- 191 (691)
T ss_pred -CCceEEEEeecccccceEEEEEec-CCccEEEecccCceEEEEEcCCCceEEE--------------------------
Confidence 33332 23455567899999999 7888999999999999999987532210
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
...+ ....-+....-|+++.|-.+ ..|++|...|+|.+||...+..+..+..|.+.|.+++.+++
T Consensus 192 ----------~~~~----~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 192 ----------ITMQ----LDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred ----------eeec----ccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 0000 00001223455888888865 47999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCee----eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe------------
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRC----IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE------------ 334 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~----~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~------------ 334 (764)
+.++++++.|+.|..|...+.+. ......|...|.+++..++ .+++|+.|..+.+-..+...
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~ 334 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPA 334 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccc
Confidence 99999999999999998765532 2234567788999998876 78888888877765443200
Q ss_pred -----------EEE-----------------------------EeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCC
Q 046871 335 -----------SLL-----------------------------LCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 335 -----------~~~-----------------------------~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~ 373 (764)
.+. ..+....|.+.+.+|++ +++-+.-...++|.+....
T Consensus 335 ~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 335 SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP 414 (691)
T ss_pred cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc
Confidence 000 01123358899999999 6666666677777776533
Q ss_pred CceeeecCCcc----eeccccccccc----------cc-----cCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEE
Q 046871 374 PQKVFQRGGSF----IAGNLSFSRAR----------VS-----LEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVL 434 (764)
Q Consensus 374 ~~~~~~~~~~~----~~~~~~~s~~~----------~~-----~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~ 434 (764)
.+......... ....+.|+-+. .. ++..... .-.....-.....|..++.|+||++++
T Consensus 415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k---el~~~~~~~~~~~I~~l~~SsdG~yia 491 (691)
T KOG2048|consen 415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK---ELKSIQSQAKCPSISRLVVSSDGNYIA 491 (691)
T ss_pred ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh---hhhccccccCCCcceeEEEcCCCCEEE
Confidence 22222111100 01112222100 00 0000000 000111113456799999999999999
Q ss_pred EeeCCCcEEEEEccccEEe
Q 046871 435 TKDAAGSVKLWEITRGVVV 453 (764)
Q Consensus 435 t~s~dG~V~lWdi~tg~~i 453 (764)
..+.+|.|.+|++++++.-
T Consensus 492 a~~t~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 492 AISTRGQIFVYNLETLESH 510 (691)
T ss_pred EEeccceEEEEEcccceee
Confidence 9999999999999987653
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1e-20 Score=199.11 Aligned_cols=269 Identities=14% Similarity=0.130 Sum_probs=198.8
Q ss_pred eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIV-ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
.+++++.|+.|++||+ .+++.+..+..+. .+.+++|+ +++..+ ++++.++.|++||..++...
T Consensus 3 ~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~------------- 66 (300)
T TIGR03866 3 AYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVI------------- 66 (300)
T ss_pred EEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEE-------------
Confidence 5789999999999997 4566777776554 46789999 566655 67778899999998764211
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPRTGSKTIK 254 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~~~~~~~ 254 (764)
..+..+ ..+..++|+|+++.++++ +.++.|++||+++++.+..
T Consensus 67 -----------------------------------~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 67 -----------------------------------GTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred -----------------------------------EeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 111112 224578899999877654 5689999999998887777
Q ss_pred eccCCcCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEE-EecCCCcEEEEeCCC
Q 046871 255 LRGHTDNIRSLLLDSTGRYCLSGSSDS-MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLAT 332 (764)
Q Consensus 255 l~~h~~~V~~l~~spdg~~l~sgs~Dg-~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~ 332 (764)
+.. ...+.+++|+|+|+++++++.++ .+.+||..+++....+.. ...+.+++|+|++++|+ ++..++.|++||+.+
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 753 34568899999999999888775 467889988877665542 34567899999999886 445699999999999
Q ss_pred CeEEEEeecC--------CCeEEEEeeCCc--eEEE-eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCC
Q 046871 333 RESLLLCTGE--------HPILQLALHDDN--IWVA-TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGS 401 (764)
Q Consensus 333 ~~~~~~~~~~--------~~V~~l~~spd~--l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 401 (764)
++.+..+... .....++|+|++ ++++ ..++.|.+||+.+++....+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--------------------- 247 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--------------------- 247 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------------------
Confidence 8876654321 123468899998 4444 4567899999987654433211
Q ss_pred CCcccCCCCCCccccCCCCceEeEEecCCcEEEEe-eCCCcEEEEEccccEEeeec
Q 046871 402 TPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTK-DAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 402 ~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~-s~dG~V~lWdi~tg~~i~~~ 456 (764)
...+..++|+|+|++|+++ +.+|.|++||+.++++++.+
T Consensus 248 ----------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 248 ----------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ----------------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 1134577899999999876 56999999999999999887
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=199.96 Aligned_cols=257 Identities=16% Similarity=0.274 Sum_probs=209.9
Q ss_pred cEEEEEe-CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEe-CCCcEEEecCCCCCeeeeeccccCCceE
Q 046871 53 DYLFTGS-RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCS-SDTTLKTWNCSSDGTCIRTLRQHSDYVT 130 (764)
Q Consensus 53 ~~L~sgs-~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s-~Dg~V~vWd~~~~~~~~~~l~~h~~~V~ 130 (764)
.+++++. .-..|.+|.+.... ......--.+.|.+++-+|+|.++.++ ..|.|++|.+ +.|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchh--hhhhhcccccceeeeecCCCceEEEeecccCcEEEEEe-ccccHHHHHHhhcccee
Confidence 4666664 33578999987632 222223346789999999999555555 8999999998 67999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccc
Q 046871 131 CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVP 210 (764)
Q Consensus 131 ~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 210 (764)
|+.|+ .|+.+|+||+.||.|.+|++......... ......
T Consensus 128 cL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~---------------------------------------~~~~p~ 167 (476)
T KOG0646|consen 128 CLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADND---------------------------------------HSVKPL 167 (476)
T ss_pred EEEEe-CCCcEEEecCCCccEEEEEEEeecccccC---------------------------------------CCccce
Confidence 99999 99999999999999999998652111100 012344
Q ss_pred eeccCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 211 IAAKGHKESVYALAMNDS--GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~--g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
..+..|.-+|+.+...+. ..+|++++.|.++++||+..+..+.++. ....+.+++++|-++.++.|+.+|.|.+.++
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 567889999999998764 3589999999999999999999888876 5788999999999999999999999999887
Q ss_pred CC----------------CeeeEEEeeecC--ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEE
Q 046871 289 GQ----------------QRCIHSYAVHTD--SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLA 349 (764)
Q Consensus 289 ~~----------------~~~~~~l~~h~~--~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~ 349 (764)
.. +..+..+.+|.+ .|+|++.+-||..|++|+.||+|+|||+.+.++++.+. ..++|+.+.
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 43 234566788988 89999999999999999999999999999999998888 688999998
Q ss_pred eeCC
Q 046871 350 LHDD 353 (764)
Q Consensus 350 ~spd 353 (764)
+.|-
T Consensus 327 i~~~ 330 (476)
T KOG0646|consen 327 INPL 330 (476)
T ss_pred eecc
Confidence 8554
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2e-23 Score=220.83 Aligned_cols=238 Identities=26% Similarity=0.424 Sum_probs=213.7
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
.++.-|...|.|+.+- ..++.+++|+.|-.+-+|.+.. ...+..|.+|..+|.++.|+.+. .|++|+.+|+|
T Consensus 22 ~~~~~hsaav~~lk~~-----~s~r~~~~Gg~~~k~~L~~i~k--p~~i~S~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIR-----KSSRSLVTGGEDEKVNLWAIGK--PNAITSLTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhhhhhhceeeee-----ccceeeccCCCceeeccccccC--CchhheeeccCCcceeeecCcchhhhcccccCCce
Confidence 3456799999999983 5578999999999999999987 56677899999999999999886 78899999999
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
++||+ ...+.++++.+|...+..+.|+ |-+.++++|+.|..+++||++..
T Consensus 95 K~wDl-eeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~---------------------------- 144 (825)
T KOG0267|consen 95 KVWDL-EEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLKIWDIRKK---------------------------- 144 (825)
T ss_pred eeeeh-hhhhhhhhhhccccCcceeeec-cceEEeccccccccceehhhhcc----------------------------
Confidence 99998 4588889999999999999999 67889999999999999999852
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 267 (764)
.+.....+|...+.++.|+|+|++++.|+.|..++|||...|+.+..|..|.+.+.++.|
T Consensus 145 --------------------Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~ 204 (825)
T KOG0267|consen 145 --------------------GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF 204 (825)
T ss_pred --------------------CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccccc
Confidence 122446678899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 268 spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
+|..-.+++|+.|+++++||+++.+.+.........|.+++|+|++..+++|..+.
T Consensus 205 hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 205 HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99998999999999999999999998888888888999999999999999987653
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.5e-21 Score=202.47 Aligned_cols=278 Identities=17% Similarity=0.218 Sum_probs=216.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKT 109 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~v 109 (764)
.||++.|.||.. +|.|.+|++|+.||+|+||.+.+ +.|+.++.- .+.|.||+|+|.+ -++.++.+..+.|
T Consensus 397 rGHtg~Vr~iSv-----dp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 397 RGHTGLVRSISV-----DPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eccCCeEEEEEe-----cCCcceeeecCCCCcEEEEEeec--ceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEE
Confidence 399999999999 68999999999999999999999 778887653 5579999999974 3333333333444
Q ss_pred ecCCCC------------------------------------CeeeeeccccCCceEEEEEecCCCcEEEEEeCC---Ce
Q 046871 110 WNCSSD------------------------------------GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG---AE 150 (764)
Q Consensus 110 Wd~~~~------------------------------------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d---g~ 150 (764)
-+..-. ..-+...-.|...|..+.|+ ..+++|++...+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcce
Confidence 442110 00112223477889999999 889999987654 46
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|.|.++..... ...+....+.|.++.|+|...
T Consensus 548 VliHQLSK~~s------------------------------------------------Q~PF~kskG~vq~v~FHPs~p 579 (733)
T KOG0650|consen 548 VLIHQLSKRKS------------------------------------------------QSPFRKSKGLVQRVKFHPSKP 579 (733)
T ss_pred EEEEecccccc------------------------------------------------cCchhhcCCceeEEEecCCCc
Confidence 88888765311 122445577899999999988
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeeeEEEeeecCceEEEEE
Q 046871 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDSVWALAS 309 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~V~~l~~ 309 (764)
+|++++. ..|+|||+.....+.++......|..++++|.|..|+.|+.|+.+..||+.- .++.+++..|...+++++|
T Consensus 580 ~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~ 658 (733)
T KOG0650|consen 580 YLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAF 658 (733)
T ss_pred eEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhh
Confidence 8888865 6799999998888888887788999999999999999999999999999975 4678889999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCC-------CCe--EEEEee-c----CCCeEEEEeeCCc--eEEEeCCCcEEEe
Q 046871 310 TPTFSHVYSGGRDLSLYLTDLA-------TRE--SLLLCT-G----EHPILQLALHDDN--IWVATTDSSVHRW 367 (764)
Q Consensus 310 spd~~~l~sgs~Dg~I~iwd~~-------~~~--~~~~~~-~----~~~V~~l~~spd~--l~~~s~dg~I~iw 367 (764)
++.-.+|++|+.||++.|+.-. +.. ++..+. | .-.|..+.|||.. |++++.||+|++|
T Consensus 659 H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 659 HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999999999999998532 111 122222 2 3458888999999 9999999999998
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.2e-21 Score=208.16 Aligned_cols=240 Identities=18% Similarity=0.259 Sum_probs=206.2
Q ss_pred cccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 046871 81 ESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~ 159 (764)
..|....+.++|.++| .|++|+.||.|++|+...+.....++..+...|.+++.. .++|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence 4688889999999998 899999999999999755545555665588888888865 669999999999999999864
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
... ..+....-++.+++|+.+|+++|.|+.|-
T Consensus 87 ~~~------------------------------------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~ 118 (933)
T KOG1274|consen 87 EED------------------------------------------------TILARFTLPIRDLAVSGSGKMIAAGSDDT 118 (933)
T ss_pred Ccc------------------------------------------------ceeeeeeccceEEEEecCCcEEEeecCce
Confidence 211 11233456789999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee--------cCceEEEEEcC
Q 046871 240 VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH--------TDSVWALASTP 311 (764)
Q Consensus 240 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h--------~~~V~~l~~sp 311 (764)
.|++.++.+......+++|.++|.++.|+|.+++|++.+.||.|++||+.++.+..++.+- ...+..++|+|
T Consensus 119 ~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 119 AVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP 198 (933)
T ss_pred eEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC
Confidence 9999999999999999999999999999999999999999999999999999888777531 34567899999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeec---CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTG---EHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
++..|+..+.|+.|++|+..+.+....+.. ...+..+.|+|.| |++++.+|.|-|||+++
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999988776653 3448999999999 88888999999999987
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.8e-21 Score=193.40 Aligned_cols=284 Identities=13% Similarity=0.211 Sum_probs=219.9
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC-CeeeeeccccCCceEEEEEecCCCc-EEEEEeCCCeEEEEeCCCCC
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD-GTCIRTLRQHSDYVTCLAAAEKNSN-IVASGGLGAEVFIWDIEAAL 160 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~-~~~~~~l~~h~~~V~~l~~~p~~~~-~lasg~~dg~I~iwdl~~~~ 160 (764)
.+.|+++.|+|.. .|++|+.|++++||.++.. ...++.+.-...+|.+..|.| ++. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 5679999999986 8999999999999997432 234566666778999999995 555 99999999999999998753
Q ss_pred CCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC-CCcEEEEEEcCCCCEEEEEeCCC
Q 046871 161 APSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH-KESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
.... ....++ ...+....+++++++|+..+..|
T Consensus 292 ~~k~----------------------------------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G 325 (514)
T KOG2055|consen 292 VTKL----------------------------------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNG 325 (514)
T ss_pred cccc----------------------------------------------cCCCCcccchhheeEecCCCCeEEEcccCc
Confidence 2211 011122 34567788899999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC-ceEEEEEcCCCCEEEE
Q 046871 240 VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD-SVWALASTPTFSHVYS 318 (764)
Q Consensus 240 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~-~V~~l~~spd~~~l~s 318 (764)
.|.+....+++.+..++ ..+.|..++|+.|++.|++++.+|.|.+||+++..|++.+....+ .-++++.++++.+||+
T Consensus 326 ~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred eEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence 99999999999999988 578899999999999999999999999999999999999874322 2356777899999999
Q ss_pred ecCCCcEEEEeCCC------CeEEEEee-cCCCeEEEEeeCCc--eEEEeC--CCcEEEeeCCCCCCceeeecCCcceec
Q 046871 319 GGRDLSLYLTDLAT------RESLLLCT-GEHPILQLALHDDN--IWVATT--DSSVHRWPAEGRNPQKVFQRGGSFIAG 387 (764)
Q Consensus 319 gs~Dg~I~iwd~~~------~~~~~~~~-~~~~V~~l~~spd~--l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~ 387 (764)
|+..|.|.|||..+ .+++..+. ....|+.+.|++|. |+.++. ...+++-.+.+..
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-------------- 470 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-------------- 470 (514)
T ss_pred ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee--------------
Confidence 99999999999653 23333332 35679999999999 555554 5677776554322
Q ss_pred cccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 388 NLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 388 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
.|+. +.. .-.....+++++|||.+.+|+.|..+|.|.+|.+.
T Consensus 471 --VFsN--------------fP~---~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 --VFSN--------------FPT---SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --eecc--------------CCC---CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1221 000 01112348899999999999999999999999874
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=4e-21 Score=193.89 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=213.5
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC--CCccceeecccccceeEEEEeCCC--eEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD--VGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~--~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V 107 (764)
.-|...|+|++|+|+ ...+++|+|..-|+|-+||+.+. ...-+..+..|..+|.++.|+|.+ .+++.|.||+|
T Consensus 183 kv~~~Rit~l~fHPt---~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPT---ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred EecccceEEEEeccc---CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 458889999999773 44579999999999999999532 133466778999999999999975 89999999999
Q ss_pred EEecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 108 KTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 108 ~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
++=|+...- ..+..+......+..+.|+ .+...++.++.=|...+||+++..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~~-------------------------- 312 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTDG-------------------------- 312 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeecCC--------------------------
Confidence 999984321 1222333234456677887 556666666666699999998752
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCcC
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSK----TIKLRGHTDN 261 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~ 261 (764)
.....+.-|...|.+++++| ...+|++++.|++++|||++.... +.....|...
T Consensus 313 ---------------------s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 313 ---------------------SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ---------------------ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 11223556777999999999 556799999999999999986422 2334469999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeeeEEEeeecC------ceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLG----QQRCIHSYAVHTD------SVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg~I~iwdl~----~~~~~~~l~~h~~------~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
|.+..|||.+-.|++.+.|..|+|||.. .-.+..++. |.. ......|.|+..+|+.|-.-..|-|+|-.
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 9999999998889999999999999983 333344443 322 13456799999999999999999999999
Q ss_pred CCeEEEEeecC--CCeEE-EEeeCCc--eEEEe-CCCcEEEeeCC
Q 046871 332 TRESLLLCTGE--HPILQ-LALHDDN--IWVAT-TDSSVHRWPAE 370 (764)
Q Consensus 332 ~~~~~~~~~~~--~~V~~-l~~spd~--l~~~s-~dg~I~iwd~~ 370 (764)
.++.+..+... ..|.+ ..|+|-+ +++|+ ..|.|+||--+
T Consensus 451 ~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 451 GGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99877665542 24544 4788877 44444 46778887544
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-21 Score=194.10 Aligned_cols=280 Identities=19% Similarity=0.233 Sum_probs=214.5
Q ss_pred cEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEE--eCCCcEEEecCCCCCe---eeeeccccCCceEEEEEecC
Q 046871 63 TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSC--SSDTTLKTWNCSSDGT---CIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 63 ~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~--s~Dg~V~vWd~~~~~~---~~~~l~~h~~~V~~l~~~p~ 137 (764)
.++|||+...+......-......+.++.|...+.|+++ +.|..|++|.- .++ ....-....+.-.|++.. .
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K--~g~~~~Vp~~~k~~gd~~~Cv~~~-s 89 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEK--DGKTPEVPRVRKLTGDNAFCVACA-S 89 (673)
T ss_pred ceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecc--cCCCCccceeeccccchHHHHhhh-h
Confidence 799999987443322222222334889999887755544 55778999983 333 111111222344566555 4
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCC
Q 046871 138 NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK 217 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 217 (764)
...++++||..+.|+|||++.. .....+++|+
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~k------------------------------------------------l~hr~lkdh~ 121 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAK------------------------------------------------LIHRFLKDHQ 121 (673)
T ss_pred cceeeeccCcCceeeehhhHHH------------------------------------------------HHhhhccCCc
Confidence 5689999999999999999853 2334478999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-cCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCeeeE
Q 046871 218 ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDSTGRY-CLSGSSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~-l~sgs~Dg~I~iwdl~~~~~~~ 295 (764)
+.|+++.++....+||+++..|.|.|..+.++.....|.... ..|+-+.|++..++ |.+++.+|.|.+||+....++.
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 999999999989999999999999999999998888887443 35678999998776 5688999999999998777766
Q ss_pred EE-eeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 296 SY-AVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 296 ~l-~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
.+ ..|..+...|+|+|.. .+|++.+.|..|.+||++.......+....|...++|.++| |++|+..|.|..||++.
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 54 5799999999999965 56779999999999999988888888889999999999999 78888899999999986
Q ss_pred C-CCceeeecCCcceecccccccc
Q 046871 372 R-NPQKVFQRGGSFIAGNLSFSRA 394 (764)
Q Consensus 372 ~-~~~~~~~~~~~~~~~~~~~s~~ 394 (764)
. .++.++..|... +.+++|.+.
T Consensus 282 ~k~Pv~v~sah~~s-Vt~vafq~s 304 (673)
T KOG4378|consen 282 TKAPVAVRSAHDAS-VTRVAFQPS 304 (673)
T ss_pred CCCCceEeeecccc-eeEEEeeec
Confidence 5 455665554443 567777653
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.4e-20 Score=176.97 Aligned_cols=218 Identities=20% Similarity=0.315 Sum_probs=173.7
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
..|.+.|+++...+..++++++|+.||.|.+||++.........-.....|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~---------------------------- 91 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI---------------------------- 91 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee----------------------------
Confidence 4588999999999889999999999999999999874321111000000000
Q ss_pred cCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC---CCEEEEEe
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST---GRYCLSGS 278 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~l~sgs 278 (764)
.......+|+-.|.++.|-| |...+.+++.|.++++||..+.+....|+ ..+.|.+-+++|- ..++++|.
T Consensus 92 -----v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 92 -----VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred -----ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEec
Confidence 01122467889999999999 77789999999999999999998888887 5678888888883 34678888
Q ss_pred CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEE-EEecCCCcEEEEeCCCC-eEEEEe---------------ec
Q 046871 279 SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHV-YSGGRDLSLYLTDLATR-ESLLLC---------------TG 341 (764)
Q Consensus 279 ~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l-~sgs~Dg~I~iwd~~~~-~~~~~~---------------~~ 341 (764)
.|-.|++.|+.+|.+-+++.+|.+.|.++.|+|...++ ++|+.||.|++||++.. .+...+ .|
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah 245 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH 245 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc
Confidence 89999999999999999999999999999999988774 69999999999999754 222221 24
Q ss_pred CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCC
Q 046871 342 EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 342 ~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~ 374 (764)
.+.|..++|+.++ +++.+.|..+++|+...++.
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 5568999999999 99999999999999987753
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=190.01 Aligned_cols=257 Identities=18% Similarity=0.184 Sum_probs=202.6
Q ss_pred ceeecccccceeEEEEeCCC---eEEEEeCCCcEEEecCC---CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCe
Q 046871 77 SATFESHVDWVNDAVLVGDN---TLVSCSSDTTLKTWNCS---SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE 150 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~---~l~s~s~Dg~V~vWd~~---~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~ 150 (764)
....+-|...|.+++|+|.. .+++|+.-|+|-+||+. .+..-+..+..|..+|.+|.|+|.+...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 44556788999999999873 68888889999999983 3334566778899999999999989999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|++-|++..... .+.........++++.|+.+..
T Consensus 259 iR~~D~~~~i~e----------------------------------------------~v~s~~~d~~~fs~~d~~~e~~ 292 (498)
T KOG4328|consen 259 IRLQDFEGNISE----------------------------------------------EVLSLDTDNIWFSSLDFSAESR 292 (498)
T ss_pred eeeeeecchhhH----------------------------------------------HHhhcCccceeeeeccccCCCc
Confidence 999999874211 1111223345677888888777
Q ss_pred EEEEEeCCCeEEEEeCCCCce-eEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCee----eEEEeeecCce
Q 046871 231 LLVSGGTEKVVRVWDPRTGSK-TIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQRC----IHSYAVHTDSV 304 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~~----~~~l~~h~~~V 304 (764)
.++.|..=|...+||.+++.. ...+.-|...|.+++++|... +|+|++.|++.+|||++.... +-....|...|
T Consensus 293 ~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV 372 (498)
T KOG4328|consen 293 SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV 372 (498)
T ss_pred cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence 788888878999999998765 667778889999999999654 689999999999999976322 22334599999
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeC----CCCeEEEEeecCC------CeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 305 WALASTPTFSHVYSGGRDLSLYLTDL----ATRESLLLCTGEH------PILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 305 ~~l~~spd~~~l~sgs~Dg~I~iwd~----~~~~~~~~~~~~~------~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
.+..|+|++..|+|.+.|..|+|||. ..-.+...+.|.. ......|.|+. +++|-.-..|-|+|-..+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 99999999888999999999999998 3445566666643 24567899988 677777788999999888
Q ss_pred CCceeee
Q 046871 373 NPQKVFQ 379 (764)
Q Consensus 373 ~~~~~~~ 379 (764)
+.+..+.
T Consensus 453 q~v~el~ 459 (498)
T KOG4328|consen 453 QMVCELH 459 (498)
T ss_pred EEeeecc
Confidence 7655544
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=186.09 Aligned_cols=243 Identities=18% Similarity=0.297 Sum_probs=187.7
Q ss_pred cccccceeEEEEeCCC---eEEEEeCCCcEEEecCCC---------------CCeeeeeccccCCceEEEEEecCCCcEE
Q 046871 81 ESHVDWVNDAVLVGDN---TLVSCSSDTTLKTWNCSS---------------DGTCIRTLRQHSDYVTCLAAAEKNSNIV 142 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~---~l~s~s~Dg~V~vWd~~~---------------~~~~~~~l~~h~~~V~~l~~~p~~~~~l 142 (764)
-.|.+.++.+.-.+-+ +.++-+..|.|+||++.. ..+++.++.+|...-..++|+|.....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577777777776543 566778889999999732 2256778888998889999997666778
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEE
Q 046871 143 ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYA 222 (764)
Q Consensus 143 asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~ 222 (764)
++|.--+.|++|...++.-. . -...+.+|..+|-.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~----------------------------------------v-----d~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWK----------------------------------------V-----DQRPFTGHTKSVED 262 (440)
T ss_pred ccCccccceEeeeeccCcee----------------------------------------e-----cCccccccccchhh
Confidence 89988899999998764211 0 01235679999999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEeCCCCce--eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeeeEE
Q 046871 223 LAMND-SGNLLVSGGTEKVVRVWDPRTGSK--TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ---QRCIHS 296 (764)
Q Consensus 223 l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~---~~~~~~ 296 (764)
|+|+| ....|++|+-||.|+|||+|.+.. ....+.|.+.|+.|.|+.+-.+|++|+.||+++|||+++ ++++.+
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 99999 456899999999999999999832 223478999999999999888999999999999999975 678899
Q ss_pred EeeecCceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCe-------------------EEEEeecCCCeEEEEeeCCc--
Q 046871 297 YAVHTDSVWALASTPT-FSHVYSGGRDLSLYLTDLATRE-------------------SLLLCTGEHPILQLALHDDN-- 354 (764)
Q Consensus 297 l~~h~~~V~~l~~spd-~~~l~sgs~Dg~I~iwd~~~~~-------------------~~~~~~~~~~V~~l~~spd~-- 354 (764)
|+.|..+|++|.|+|. ...|++++.|.+|.+||+.... ++.+.+....+..+.|++.-
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 9999999999999984 4677888999999999985211 22222345668889998875
Q ss_pred eEEEeCCCcEEEee
Q 046871 355 IWVATTDSSVHRWP 368 (764)
Q Consensus 355 l~~~s~dg~I~iwd 368 (764)
+++.+.-..++||.
T Consensus 423 ~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 423 LLVSTAIDGFNVFK 436 (440)
T ss_pred eEEEecccceeEEE
Confidence 55554444455653
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=190.48 Aligned_cols=249 Identities=20% Similarity=0.284 Sum_probs=190.8
Q ss_pred eEEEeecc--cccCCCcEEEEEeCCCcEEEEeCCCCC-Ccc------------------ceeecccccceeEEEEeCC--
Q 046871 39 NCLAVLKS--SVSNGVDYLFTGSRDGTLKRWSLADDV-GSC------------------SATFESHVDWVNDAVLVGD-- 95 (764)
Q Consensus 39 ~~l~~~~~--~~S~d~~~L~sgs~Dg~I~iWd~~~~~-~~~------------------~~~l~~h~~~V~~v~~s~d-- 95 (764)
.|++|... .-..-|+|+|.|..|..|.|||+.-.. ..+ ...-.+|++.|.+++|+..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 45555432 112246799999999999999986311 111 1123479999999999876
Q ss_pred CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
+.|+|||.|.+|++||+ ..+++..++..|.+.|.++.|+|....+|++|+.|++|.+.|++.......
T Consensus 257 nVLaSgsaD~TV~lWD~-~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~----------- 324 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDV-DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK----------- 324 (463)
T ss_pred eeEEecCCCceEEEEEc-CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-----------
Confidence 58999999999999998 669999999999999999999998999999999999999999985211100
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG-SKTI 253 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~-~~~~ 253 (764)
.-...+.|-.++|.| ....++++..||+|+-+|+|.. +++.
T Consensus 325 -------------------------------------~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 325 -------------------------------------EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred -------------------------------------eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee
Confidence 111256788999988 4567888999999999999976 8999
Q ss_pred EeccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCee--eEEEeeecCceEEEEEcCCCCE-EEEecCCCcEEEEe
Q 046871 254 KLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRC--IHSYAVHTDSVWALASTPTFSH-VYSGGRDLSLYLTD 329 (764)
Q Consensus 254 ~l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~~--~~~l~~h~~~V~~l~~spd~~~-l~sgs~Dg~I~iwd 329 (764)
+++.|.++|.+|+++..- .++++++.|++|++|++..-.. +..-...-+...|.++.|+-.+ ++.|+..+.++|||
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 999999999999999854 5688999999999999864332 2222222234667778887654 55777778899999
Q ss_pred CCCCeEE
Q 046871 330 LATRESL 336 (764)
Q Consensus 330 ~~~~~~~ 336 (764)
+.+...+
T Consensus 448 ~~~~~~V 454 (463)
T KOG0270|consen 448 IFTNSPV 454 (463)
T ss_pred cccChhH
Confidence 9876544
No 149
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=5.2e-18 Score=186.20 Aligned_cols=360 Identities=28% Similarity=0.450 Sum_probs=267.1
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccc-cceeEEEE-eCCC--eEEEEeC-CC
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHV-DWVNDAVL-VGDN--TLVSCSS-DT 105 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~v~~-s~d~--~l~s~s~-Dg 105 (764)
..+|...|.++.+ .+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ .+++ .++..+. |+
T Consensus 61 ~~~~~~~i~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 61 LRGHEDSITSIAF-----SPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred eeeccceEEEEEE-----CCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 3589999999999 6889999999999999999998732 2466666644 37777777 5654 3444444 89
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
.+.+|++.........+..|...|.+++|+ +++..+++++. |+.+++|++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 188 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTG------------------------- 188 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCC-------------------------
Confidence 999999743257778888999999999999 66778888885 999999999852
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE-EeccCCcCe
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTI-KLRGHTDNI 262 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~V 262 (764)
.....+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+|....
T Consensus 189 -----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 245 (466)
T COG2319 189 -----------------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245 (466)
T ss_pred -----------------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce
Confidence 12233555899999999999988 55555999999999998888887 688888875
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCee-eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC-IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT- 340 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~-~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~- 340 (764)
...|++++.++++++.|+.+++|++..... +..+..|...|.++.|+|++..+++++.|+.+.+|++.+........
T Consensus 246 -~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 324 (466)
T COG2319 246 -VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324 (466)
T ss_pred -eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeee
Confidence 448999998999999999999999987664 55556788999999999988899889999999999998887665543
Q ss_pred --cCCCeEEEEeeCC--ceEEE-eCCCcEEEeeCCCCCCceeeecCCcceeccccccccc------cccCCCCCcccCCC
Q 046871 341 --GEHPILQLALHDD--NIWVA-TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRAR------VSLEGSTPVSSRFK 409 (764)
Q Consensus 341 --~~~~V~~l~~spd--~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~ 409 (764)
+...+..+.+.++ .++.+ ..|+.+.+|+............... ...+.+.+ . ...++...++....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSP-DGRVVSSGSTDGTVRLWDLST 401 (466)
T ss_pred cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce--EEEEEECC-CCCEEEEecCCCceEEEeccc
Confidence 4446888888434 25555 5788999999988772222222211 22333433 1 01122222222221
Q ss_pred CCC-ccccCC-CCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 410 EPN-FTIPGI-PGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 410 ~~~-~~i~g~-~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
... ...... ..+....+++++..+++++.++.+++|++.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 111 112223 6788889999999999999999999999987
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=4e-20 Score=182.31 Aligned_cols=244 Identities=22% Similarity=0.273 Sum_probs=191.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC--------------CCccceeecccccceeEEEEeCC--
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD--------------VGSCSATFESHVDWVNDAVLVGD-- 95 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~--------------~~~~~~~l~~h~~~V~~v~~s~d-- 95 (764)
.+|.+.|+-+...+. ++..+.++=+..|.|.||++... ..+.+.++.+|...=..++|+|-
T Consensus 148 i~h~g~~NRvr~~~~---~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRL---GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeeccc---CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 478888888887321 24457777788999999997541 24668889999999999999984
Q ss_pred CeEEEEeCCCcEEEecCCCCCee--eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTC--IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~--~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
|.|++|.--+.|++|........ ...+.+|...|-.++|+|.....|++|+-||.|+|||++.+..
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------------ 292 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------------ 292 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------------
Confidence 68999988899999997543222 2356679999999999998899999999999999999997521
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---Cc
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT---GS 250 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~---~~ 250 (764)
......+.|.+.|..|.|+..-.+|++|+.||+++|||+++ ++
T Consensus 293 ----------------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 293 ----------------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred ----------------------------------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence 11123478999999999999888999999999999999985 46
Q ss_pred eeEEeccCCcCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe----------------eeEEEeeec--CceEEEEEcC
Q 046871 251 KTIKLRGHTDNIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQR----------------CIHSYAVHT--DSVWALASTP 311 (764)
Q Consensus 251 ~~~~l~~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~----------------~~~~l~~h~--~~V~~l~~sp 311 (764)
++..|+-|..+|++|.|+|. ...|++++.|..|.+||+.... +.+-+-.|. ..+..+.|++
T Consensus 339 pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~ 418 (440)
T KOG0302|consen 339 PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR 418 (440)
T ss_pred cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc
Confidence 78899999999999999994 4578888999999999984211 112233454 3588889987
Q ss_pred CC-CEEEEecCCCc
Q 046871 312 TF-SHVYSGGRDLS 324 (764)
Q Consensus 312 d~-~~l~sgs~Dg~ 324 (764)
+- .++++.+.||.
T Consensus 419 QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 419 QIPGLLVSTAIDGF 432 (440)
T ss_pred CCCCeEEEecccce
Confidence 54 46777777774
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-19 Score=174.74 Aligned_cols=252 Identities=15% Similarity=0.263 Sum_probs=189.8
Q ss_pred cccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC---CeeeeeccccCCceEEEEEec-CCCcEEEEEeCCCeEEEEe
Q 046871 81 ESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD---GTCIRTLRQHSDYVTCLAAAE-KNSNIVASGGLGAEVFIWD 155 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~---~~~~~~l~~h~~~V~~l~~~p-~~~~~lasg~~dg~I~iwd 155 (764)
.+|.+-|.|+.|...| ++++|+.|++|+|||...+ ..+....+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999887 8999999999999996332 356778889999999999975 4589999999999999998
Q ss_pred CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC--CCCEEE
Q 046871 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND--SGNLLV 233 (764)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp--~g~~l~ 233 (764)
-........ .........+....+.|+.+.|.| -|-.++
T Consensus 90 E~~~~~~~~---------------------------------------~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA 130 (361)
T KOG2445|consen 90 EQEKSEEAH---------------------------------------GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLA 130 (361)
T ss_pred ecccccccc---------------------------------------cceeEEEEEeecCCcceeEEEecchhcceEEE
Confidence 642110000 001223345677789999999999 577899
Q ss_pred EEeCCCeEEEEeCCCC------ceeEEec-------cCCcCeEEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCC-
Q 046871 234 SGGTEKVVRVWDPRTG------SKTIKLR-------GHTDNIRSLLLDST---GRYCLSGSSD-----SMIRLWDLGQQ- 291 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~------~~~~~l~-------~h~~~V~~l~~spd---g~~l~sgs~D-----g~I~iwdl~~~- 291 (764)
+++.||.||||+.-.. .....+. .+..+..|+.|+|. ..+|++|+.+ +.++||....+
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 9999999999986443 2233333 35567889999973 3567777765 47888876432
Q ss_pred ---eeeEEEeeecCceEEEEEcCC----CCEEEEecCCCcEEEEeCCCCe-----------------EEEE---e-ecCC
Q 046871 292 ---RCIHSYAVHTDSVWALASTPT----FSHVYSGGRDLSLYLTDLATRE-----------------SLLL---C-TGEH 343 (764)
Q Consensus 292 ---~~~~~l~~h~~~V~~l~~spd----~~~l~sgs~Dg~I~iwd~~~~~-----------------~~~~---~-~~~~ 343 (764)
..+.++.+|+++|+.|+|.|+ ...|++++.|| |+||.+.... .+.. + .|+.
T Consensus 211 rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~ 289 (361)
T KOG2445|consen 211 RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG 289 (361)
T ss_pred ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC
Confidence 345667799999999999995 35789999999 9999987311 1111 2 2567
Q ss_pred CeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 344 PILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 344 ~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
.|..+.|+-.| |.+.+.||.||+|...-.
T Consensus 290 ~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 290 EVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 89999999999 777788999999987543
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.1e-20 Score=180.19 Aligned_cols=301 Identities=17% Similarity=0.265 Sum_probs=226.2
Q ss_pred eEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-ccceee--cccccceeEEEEeCC--
Q 046871 21 RLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-SCSATF--ESHVDWVNDAVLVGD-- 95 (764)
Q Consensus 21 ~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-~~~~~l--~~h~~~V~~v~~s~d-- 95 (764)
+-.|...+.-...|+.+|..++|..-+--.+-+.++|.|.+ .+.+|+...+.+ ..++.. +.|......++|+-+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 44555555556789999999999643322344577777764 788888765322 222222 236677777888733
Q ss_pred -C--eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCC
Q 046871 96 -N--TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDD 172 (764)
Q Consensus 96 -~--~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~ 172 (764)
+ +++.++.-|.|+|.|+ ..+++...+.+|...|+.+.++|.+.+++++++.|..|++|++++..+....
T Consensus 103 ~~~p~la~~G~~GvIrVid~-~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf------- 174 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDV-VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF------- 174 (385)
T ss_pred CCCeeEEeecceeEEEEEec-chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe-------
Confidence 2 7899999999999997 5688899999999999999999888999999999999999999975322110
Q ss_pred cCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 046871 173 CSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT 252 (764)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~ 252 (764)
--..+|.+.|.++.|+.+|.+|++++.|..|.+|++...+..
T Consensus 175 --------------------------------------GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 175 --------------------------------------GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred --------------------------------------cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 115789999999999999999999999999999998732211
Q ss_pred E----------------------------EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-C------------
Q 046871 253 I----------------------------KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-Q------------ 291 (764)
Q Consensus 253 ~----------------------------~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~------------ 291 (764)
. +-..|...|.|+.|- |.++++-|-++.|..|.... .
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 0 112366677777776 68999999999999998721 1
Q ss_pred -eeeEEEeeecCceEEEEE--cCCCCEEEEecCCCcEEEEeCCCCeEEE--Eee---cCCCeEEEEeeCCc--eEEEeCC
Q 046871 292 -RCIHSYAVHTDSVWALAS--TPTFSHVYSGGRDLSLYLTDLATRESLL--LCT---GEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 292 -~~~~~l~~h~~~V~~l~~--spd~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~---~~~~V~~l~~spd~--l~~~s~d 361 (764)
..+.++......||-+.| +|-++.|+.|...|.|++||++..++.. ++. ....|...+|+.|+ |+..+.|
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 123445555667887766 6778999999999999999999776532 222 35679999999999 7788899
Q ss_pred CcEEEeeCC
Q 046871 362 SSVHRWPAE 370 (764)
Q Consensus 362 g~I~iwd~~ 370 (764)
++|-.||..
T Consensus 375 ~~Vwrwdrv 383 (385)
T KOG1034|consen 375 GTVWRWDRV 383 (385)
T ss_pred CcEEEEEee
Confidence 999999854
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=6.4e-20 Score=190.97 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=123.8
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 046871 218 ESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG-------SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 218 ~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl 288 (764)
..|+.+.|.| |...|++++.||.|++|.+..+ .....+.+|...|.++.|+| ....|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3477888998 7788999999999999988654 34567889999999999999 4567899999999999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE-eec--CCCeEEEEeeCCc--eEEEeCC--
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL-CTG--EHPILQLALHDDN--IWVATTD-- 361 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~--~~~V~~l~~spd~--l~~~s~d-- 361 (764)
++++....+.+|++.|..++|+|+|+.+++.+.||+|++|.-++++.... -.. ...--.+.|.-++ +++.+.|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 99999999999999999999999999999999999999999987754322 111 2223456676676 4444433
Q ss_pred --CcEEEeeCCC
Q 046871 362 --SSVHRWPAEG 371 (764)
Q Consensus 362 --g~I~iwd~~~ 371 (764)
..|.+||..+
T Consensus 788 SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 788 SERQVQMYDAQT 799 (1012)
T ss_pred chhhhhhhhhhh
Confidence 4577777654
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.7e-20 Score=189.88 Aligned_cols=330 Identities=15% Similarity=0.211 Sum_probs=228.5
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCc-EEEEEeCCCeEE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSN-IVASGGLGAEVF 152 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~-~lasg~~dg~I~ 152 (764)
.+...+.+|++.|.+|...+.| .|++|+.||+|+||.+ .++.|++++. ..+.|.|++|+|.... +||++ .+..+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi-~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEI-ATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEe-ecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence 4456678999999999999987 8999999999999998 6799998876 4568999999964333 44444 444466
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCC---CCccceeccCCCCcEEEEEEcCCC
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQS---QGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
+-+..-+....... .... + .... ....-...+..|.... ....+.....|..+|..+.|+..|
T Consensus 468 ivnp~~G~~~e~~~---t~el---l-~~~~-------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP---TKEL---L-ASAP-------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred EeCccccchhhhcc---hhhh---h-hcCC-------CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 65543221110000 0000 0 0000 0000011223333321 112234566789999999999999
Q ss_pred CEEEEEeCC---CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEE
Q 046871 230 NLLVSGGTE---KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWA 306 (764)
Q Consensus 230 ~~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~ 306 (764)
.+|++...+ ..|.|+++...+...-|+...+.|.++.|+|...+|++++ ...|+|||+..++.++.+......|.+
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISS 612 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeee
Confidence 999987654 4788999887766666766678899999999999999886 467999999988888888777788999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCC-eEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCC
Q 046871 307 LASTPTFSHVYSGGRDLSLYLTDLATR-ESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 307 l~~spd~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
++.+|.|..|+.|+.|+.+..+|+.-. ++.+.+. |...++.++||+.. +++|+.||++.|+.-.-..
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~--------- 683 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN--------- 683 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh---------
Confidence 999999999999999999999999754 3444443 67889999999999 7777888999988432100
Q ss_pred cceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEE
Q 046871 383 SFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLW 445 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lW 445 (764)
.+--+| ..+| +...+.......-+|..+.|.|..-+|++++.||+|++|
T Consensus 684 -----Dl~qnp--------liVP-lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 -----DLLQNP--------LIVP-LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----hhhcCC--------ceEe-eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 000000 0000 111111111123457888899999999999999999998
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=181.44 Aligned_cols=231 Identities=16% Similarity=0.218 Sum_probs=181.5
Q ss_pred eEEEEeCCCcEEEecCCCCCe--eee------------------eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 046871 97 TLVSCSSDTTLKTWNCSSDGT--CIR------------------TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~--~~~------------------~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl 156 (764)
+++.|+.|..|.|||+.--.. +.. .-.+|++.|.+++|+....+.||+|+.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 899999999999999743211 111 123699999999998667899999999999999999
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEE
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSG 235 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sg 235 (764)
.++. ...++..|.+.|.++.|+| ...+|++|
T Consensus 274 ~~g~------------------------------------------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 274 DTGK------------------------------------------------PKSSITHHGKKVQTLEWHPYEPSVLLSG 305 (463)
T ss_pred CCCC------------------------------------------------cceehhhcCCceeEEEecCCCceEEEec
Confidence 9853 3344667899999999999 67889999
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-eeeEEEeeecCceEEEEEcCCC
Q 046871 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQ-RCIHSYAVHTDSVWALASTPTF 313 (764)
Q Consensus 236 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~-~~~~~l~~h~~~V~~l~~spd~ 313 (764)
+.|++|.+.|.|........-...+.|..++|.|... .+++++.||+|+-+|+++. +++.+++.|.++|.+|++++.-
T Consensus 306 s~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 306 SYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred cccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC
Confidence 9999999999995332222222457899999999654 5778889999999999874 9999999999999999998654
Q ss_pred -CEEEEecCCCcEEEEeCCCCeEEEEeec---CCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCc
Q 046871 314 -SHVYSGGRDLSLYLTDLATRESLLLCTG---EHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 314 -~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~ 375 (764)
.+++|++.|+.|++|++..........+ -+...|.++.|+- +++|+..+.+++||+.+..++
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 4678999999999999975544333222 2235677777776 788888889999999876554
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.3e-20 Score=208.17 Aligned_cols=278 Identities=20% Similarity=0.265 Sum_probs=216.8
Q ss_pred cCCCc-EEEEE----------eCCCcEEEEeCCCCCC----ccceeecccccceeEEEEeCC-----CeEEEEeCCCcEE
Q 046871 49 SNGVD-YLFTG----------SRDGTLKRWSLADDVG----SCSATFESHVDWVNDAVLVGD-----NTLVSCSSDTTLK 108 (764)
Q Consensus 49 S~d~~-~L~sg----------s~Dg~I~iWd~~~~~~----~~~~~l~~h~~~V~~v~~s~d-----~~l~s~s~Dg~V~ 108 (764)
||++. +|++| +.+.++.||.+..... +....+. -....++++|.+. |.|+.|..||.|.
T Consensus 15 Sp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ 93 (1049)
T KOG0307|consen 15 SPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIV 93 (1049)
T ss_pred cCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceE
Confidence 67665 55544 3456777777653212 1222222 2456788999864 3588999999999
Q ss_pred EecCCCC-----CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 109 TWNCSSD-----GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 109 vWd~~~~-----~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
+||...- ...+.+...|.+.|..+.|++..+++||+|+.||.|.|||++....+....
T Consensus 94 ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------------- 156 (1049)
T KOG0307|consen 94 LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------------- 156 (1049)
T ss_pred EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------------
Confidence 9997441 234567788999999999998788899999999999999998743222110
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc--
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD-- 260 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-- 260 (764)
.....+.|.+++|+. ..++|++++.+|.+.|||++..+.+..+..|..
T Consensus 157 -----------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 157 -----------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred -----------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 122357799999987 456788999999999999999988888876655
Q ss_pred CeEEEEEcCCCC-EEEEEeCCC---cEEEEeCCC-CeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCe
Q 046871 261 NIRSLLLDSTGR-YCLSGSSDS---MIRLWDLGQ-QRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 261 ~V~~l~~spdg~-~l~sgs~Dg---~I~iwdl~~-~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
.+..+.|+|++. .|++++.|. .|.+||++. ..+++++++|...|.++.|++.+ .+++|++.|+.|.+|+..+++
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 477899999874 577777654 599999975 45788899999999999998865 888999999999999999999
Q ss_pred EEEEeec-CCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCC
Q 046871 335 SLLLCTG-EHPILQLALHDDN---IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 335 ~~~~~~~-~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~ 373 (764)
.+..+.. ...+..+.|+|.. +++++-||.|.||.+.+..
T Consensus 288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9988775 6689999999987 7888889999999997654
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.1e-19 Score=170.09 Aligned_cols=276 Identities=12% Similarity=0.150 Sum_probs=200.7
Q ss_pred eeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCC
Q 046871 87 VNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKS 165 (764)
Q Consensus 87 V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~ 165 (764)
..|+.|++.| +|++|+.||.|.|||+ .+...-+.+.+|..+|.+++|+ ++++.|++++.|..|.+||+..+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~-~T~~iar~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~-- 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDF-DTFRIARMLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLK-- 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEc-cccchhhhhhccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCcee--
Confidence 7889999998 8999999999999998 4566778899999999999999 899999999999999999998753211
Q ss_pred CCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 046871 166 GDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVW 244 (764)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iw 244 (764)
.....++|+.+.|+|.. +..++.-.+..-.+-
T Consensus 102 -----------------------------------------------rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi 134 (405)
T KOG1273|consen 102 -----------------------------------------------RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVI 134 (405)
T ss_pred -----------------------------------------------EEEccCccceeeeccccCCeEEEEEecCCcEEE
Confidence 11236778888998843 333333333334444
Q ss_pred eCCCCceeEEeccC----CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec-CceEEEEEcCCCCEEEEe
Q 046871 245 DPRTGSKTIKLRGH----TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-DSVWALASTPTFSHVYSG 319 (764)
Q Consensus 245 d~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-~~V~~l~~spd~~~l~sg 319 (764)
++..++...--... .....+..|.+.|+++++|...|.+.++|..+.+|+..++... ..|..+.++..|++|+.-
T Consensus 135 ~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 135 DFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred EecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEe
Confidence 44432211110000 1122334688999999999999999999999999999998776 789999999999999999
Q ss_pred cCCCcEEEEeCCCC-------eEE--EEee---cCCCeEEEEeeCCc-eEEEeC--CCcEEEeeCCCCCCceeeecCCcc
Q 046871 320 GRDLSLYLTDLATR-------ESL--LLCT---GEHPILQLALHDDN-IWVATT--DSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 320 s~Dg~I~iwd~~~~-------~~~--~~~~---~~~~V~~l~~spd~-l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
+.|..|+.|+++.- +.. +.++ ..-.-.+++|+.+| .++|+. ...++||.-..|.+++.+.+..+.
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE 294 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE 294 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence 99999999998621 111 1111 12344688999999 333333 468999999999999998876543
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
..-. +.|.|-...+++. ..|.|++|....
T Consensus 295 ~l~D-----------------------------------V~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ELLD-----------------------------------VNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heee-----------------------------------cccccceeeeeec-cCCceEEEEeec
Confidence 3322 2333344456665 688999998764
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=3.7e-19 Score=186.36 Aligned_cols=259 Identities=19% Similarity=0.272 Sum_probs=186.5
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKT 109 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~v 109 (764)
.-|...|..+.|. |....|++++.|.+|++||+++....-...+.+|...|.+++|.+.+ .|++|+.||.|.|
T Consensus 97 ~aH~nAifDl~wa-----pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 97 LAHKNAIFDLKWA-----PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred ccccceeEeeccC-----CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 4699999999994 76778999999999999999984433334489999999999999985 7999999999999
Q ss_pred ecCCCCCe------e--------------------eeeccccCCceEE---EEEecCCCcEEEEEeC-CCeEEEEeCCCC
Q 046871 110 WNCSSDGT------C--------------------IRTLRQHSDYVTC---LAAAEKNSNIVASGGL-GAEVFIWDIEAA 159 (764)
Q Consensus 110 Wd~~~~~~------~--------------------~~~l~~h~~~V~~---l~~~p~~~~~lasg~~-dg~I~iwdl~~~ 159 (764)
||+..++. + ++.-..+...|.. +.+. .|...||+++. |+.|++||++..
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeeccc
Confidence 99754320 0 0111123333433 3344 57888888887 999999999976
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
....+....... .... .....-.+.++.....|.+|++.+.|+
T Consensus 251 ~~~~r~ep~~~~-----------------------------------~~~t--~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 251 YTAYRQEPRGSD-----------------------------------KYPT--HSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred ccccccCCCccc-----------------------------------CccC--cccceeeeEEEEecCCCCeEEEEecCC
Confidence 444332211100 0000 011134577888888899999999999
Q ss_pred eEEEEeCCCCc--eeEEeccCCc--CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eeEEEeeecCceEEEEEcCC-C
Q 046871 240 VVRVWDPRTGS--KTIKLRGHTD--NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-CIHSYAVHTDSVWALASTPT-F 313 (764)
Q Consensus 240 ~I~iwd~~~~~--~~~~l~~h~~--~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h~~~V~~l~~spd-~ 313 (764)
.|++||+.+.. .+..+.++.. .-..-..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. -
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 99999997653 3344444322 11223468999999999999999999997754 45667899999999999763 2
Q ss_pred CEEEEecCCCcEEEEeCCCC
Q 046871 314 SHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 314 ~~l~sgs~Dg~I~iwd~~~~ 333 (764)
.-+++++.|..+++|++..+
T Consensus 374 t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCceeeccCcceEEEeccCc
Confidence 34677799999999999654
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.9e-19 Score=179.94 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=198.8
Q ss_pred CeeEEEeecccccCCCcEEEEE--eCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTG--SRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sg--s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~ 113 (764)
+|+++.| +. ...|+++ +.|..|++|.-....++....-....+.-.|++..... ++++|+..+.|+|||+.
T Consensus 36 g~~s~~w-----~~-~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 36 GDFSFNW-----QR-RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred cceeeec-----cc-cceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 4999999 23 3335544 56889999976543222222222222233444444333 89999999999999984
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
...+.+.+++|.+.|+++.|. ....+||+++..|.|.+..+.++......
T Consensus 110 -~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f---------------------------- 159 (673)
T KOG4378|consen 110 -AKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTF---------------------------- 159 (673)
T ss_pred -HHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCccccce----------------------------
Confidence 566778899999999999999 88999999999999999998875322110
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEe-ccCCcCeEEEEEcCCC
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTIKL-RGHTDNIRSLLLDSTG 271 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg 271 (764)
..+....|.-+.|++..+ +|.+++.+|.|.+||+....++..+ ..|..+...|+|+|..
T Consensus 160 -------------------~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 160 -------------------TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred -------------------ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 112245567888999665 4667899999999999877776654 6799999999999954
Q ss_pred -CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-EEEEee-cCCCeEEE
Q 046871 272 -RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCT-GEHPILQL 348 (764)
Q Consensus 272 -~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~-~~~~V~~l 348 (764)
.+|++.+.|..|.+||++..+....+. -..+..+++|.++|.+|+.|...|.|..||++..+ ++.+.. |...|+++
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred cceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 568899999999999999887777765 35578999999999999999999999999998654 444443 67789999
Q ss_pred EeeCCc
Q 046871 349 ALHDDN 354 (764)
Q Consensus 349 ~~spd~ 354 (764)
+|-+..
T Consensus 300 afq~s~ 305 (673)
T KOG4378|consen 300 AFQPSP 305 (673)
T ss_pred Eeeecc
Confidence 998875
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=9.8e-19 Score=183.14 Aligned_cols=268 Identities=16% Similarity=0.220 Sum_probs=208.5
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~ 115 (764)
.|+.++| -|||..|+.+.. ..+.+||.+. +....++++|.+.|+|++|+.|| +++||+.|..|.+|+..-.
T Consensus 14 ci~d~af-----kPDGsqL~lAAg-~rlliyD~nd--G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAF-----KPDGTQLILAAG-SRLLVYDTSD--GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEE-----CCCCceEEEecC-CEEEEEeCCC--cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 7888998 699998887754 4789999998 77899999999999999999998 8999999999999995332
Q ss_pred CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCC
Q 046871 116 GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195 (764)
Q Consensus 116 ~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (764)
+.. . ..|.+.|.||.|. |-.+.|++++... .-+|.......
T Consensus 86 G~L--k-YSH~D~IQCMsFN-P~~h~LasCsLsd-FglWS~~qK~V---------------------------------- 126 (1081)
T KOG1538|consen 86 GIL--K-YSHNDAIQCMSFN-PITHQLASCSLSD-FGLWSPEQKSV---------------------------------- 126 (1081)
T ss_pred cee--e-eccCCeeeEeecC-chHHHhhhcchhh-ccccChhhhhH----------------------------------
Confidence 322 1 2599999999999 6678899988753 67787654210
Q ss_pred CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec---cCCcCeEEEEEcCCC-
Q 046871 196 NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR---GHTDNIRSLLLDSTG- 271 (764)
Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg- 271 (764)
........|.+++|..||++++.|-.+|+|.+=+- +++....+. |...+|.+++|+|..
T Consensus 127 ----------------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 127 ----------------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred ----------------HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCC
Confidence 01122456889999999999999999999999864 454444333 467799999999954
Q ss_pred ----CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeE
Q 046871 272 ----RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPIL 346 (764)
Q Consensus 272 ----~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~ 346 (764)
..+++.....++..+.+ +|+.+..-+.-.-...|+.+.++|.++..|+.|+.+.+|.-+ |-.+-+.. ....|+
T Consensus 190 ~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIW 267 (1081)
T KOG1538|consen 190 EGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIW 267 (1081)
T ss_pred CCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEE
Confidence 46778888888888887 454444322223335688999999999999999999999644 44444443 477899
Q ss_pred EEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 347 QLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 347 ~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
.++..|++ +++|+.||+|-.|++.
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999 8999999999999874
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=4.2e-18 Score=164.99 Aligned_cols=271 Identities=18% Similarity=0.221 Sum_probs=199.4
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCc----------cceeec-ccccceeEEEEe-------CC-CeEEEEeCCCcEE
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGS----------CSATFE-SHVDWVNDAVLV-------GD-NTLVSCSSDTTLK 108 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~----------~~~~l~-~h~~~V~~v~~s-------~d-~~l~s~s~Dg~V~ 108 (764)
|||||..|++-+.|..+++|++...-.. ....++ .....|.+.+|- |+ +++++.+.|.-|+
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 6999999999999999999998642110 001111 124457777775 33 3788999999999
Q ss_pred EecCCCCCeeeeeccc--cCC---ceEEEEEecCCCcEEEEEeCCCeEEEEeCCC-CCCCCCCCCCCcCCcCccccCCCC
Q 046871 109 TWNCSSDGTCIRTLRQ--HSD---YVTCLAAAEKNSNIVASGGLGAEVFIWDIEA-ALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~--h~~---~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
+||. .+++....+.. |.+ ...+++|+ +|+.+|+.| ..+.|+++|+.. +..-....
T Consensus 137 ~wda-ftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~---------------- 197 (406)
T KOG2919|consen 137 LWDA-FTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT---------------- 197 (406)
T ss_pred eeec-cccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchh----------------
Confidence 9996 56766655543 333 35689999 788888766 567899999943 21110000
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcC
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN 261 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 261 (764)
....-..+..+-|.+++|+| +...++.|+....+-||.-..+.++..+-+|.+.
T Consensus 198 -------------------------t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 198 -------------------------TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred -------------------------hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 00001234467789999999 5568999999999999988888999999999999
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CeeeEEEeeecC-ceEEEEE--cCCCCEEEEecCCCcEEEEeCCC-CeE
Q 046871 262 IRSLLLDSTGRYCLSGSS-DSMIRLWDLGQ-QRCIHSYAVHTD-SVWALAS--TPTFSHVYSGGRDLSLYLTDLAT-RES 335 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~-Dg~I~iwdl~~-~~~~~~l~~h~~-~V~~l~~--spd~~~l~sgs~Dg~I~iwd~~~-~~~ 335 (764)
|+.+.|.++|+.|++|+. |-.|..||++. ..++..+..|.+ .-..|.| .|++++|++|+.||.|++||+++ +..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 999999999999999986 67899999986 456777777766 3345555 68999999999999999999997 664
Q ss_pred EEEe-ecCCCeEEEEeeCCc-eEEEeCCC
Q 046871 336 LLLC-TGEHPILQLALHDDN-IWVATTDS 362 (764)
Q Consensus 336 ~~~~-~~~~~V~~l~~spd~-l~~~s~dg 362 (764)
+..+ .+...++.++++|-- |++.+...
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccccceecCcccceeeeccCc
Confidence 4443 457789999999998 44444333
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=7.9e-19 Score=165.57 Aligned_cols=294 Identities=17% Similarity=0.252 Sum_probs=204.1
Q ss_pred EEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec-ccccceeEEEEeCCCeEEEE
Q 046871 23 TYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE-SHVDWVNDAVLVGDNTLVSC 101 (764)
Q Consensus 23 ~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~l~s~ 101 (764)
.|+++ +|.+.|+|+.| ....+|++|..-|.|++|++.+ ......++ .|...|+.+.-.|++.+.+-
T Consensus 7 ~fvLR-----p~~~~v~s~~f------qa~~rL~sg~~~G~V~~w~lqt--~r~~~~~r~~g~~~it~lq~~p~d~l~tq 73 (323)
T KOG0322|consen 7 FFVLR-----PHSSSVTSVLF------QANERLMSGLSVGIVKMWVLQT--ERDLPLIRLFGRLFITNLQSIPNDSLDTQ 73 (323)
T ss_pred eeEec-----cccchheehhh------ccchhhhcccccceEEEEEeec--CccchhhhhhccceeeceeecCCcchhhc
Confidence 57777 89999999999 4567899999999999999998 44455566 57888999999998899999
Q ss_pred eCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 102 SSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA-EVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 102 s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
+.|+.+.+|++.. +. .+..|.-.++++.|++. -+...+... ..-.++-+......+
T Consensus 74 gRd~~L~lw~ia~-s~---~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~---------------- 130 (323)
T KOG0322|consen 74 GRDPLLILWTIAY-SA---FISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHK---------------- 130 (323)
T ss_pred CCCceEEEEEccC-cc---eEEEeeeeccccccccc---eeccCCCcchhheecCCcccchhhh----------------
Confidence 9999999999843 22 22234445566666621 111111111 111121111000000
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCC--EEEEEeCCCeEEEEeCCCCceeEE---
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGN--LLVSGGTEKVVRVWDPRTGSKTIK--- 254 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~--~l~sgs~dg~I~iwd~~~~~~~~~--- 254 (764)
...+..-.+.+.+ ....+..+.+++..+.- ++. ++++|.++|.|.+||+.++..+..
T Consensus 131 ---------~D~g~~tqv~i~d--------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~ 193 (323)
T KOG0322|consen 131 ---------QDGGDTTQVQIAD--------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ 193 (323)
T ss_pred ---------hccCccceeEccC--------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc
Confidence 0000000000100 01233456777777433 333 467899999999999999844443
Q ss_pred -------eccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ee--eEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 255 -------LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ--RC--IHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 255 -------l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~--~~--~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
...|..+|.++.+.+.-..=++|+.+..+..|++... .+ -.++....-.|..+..-||++.++|++.|+
T Consensus 194 ~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 194 SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCC
Confidence 4468899999999886666778888888999988532 22 222333345688899999999999999999
Q ss_pred cEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 324 SLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 324 ~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
.||+|+.++..++..+. |...|.+++|+|+. ++.|+.|+.|.+|++
T Consensus 274 RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999998776 78899999999995 889999999999986
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=9.7e-19 Score=169.83 Aligned_cols=271 Identities=16% Similarity=0.260 Sum_probs=195.8
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEe
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTW 110 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vW 110 (764)
.|......++|..... ....+||.||.-|.|+|.|+.+ .++...+.+|...|+.+.+.|+. +++++|.|.+|++|
T Consensus 87 d~~Esfytcsw~yd~~-~~~p~la~~G~~GvIrVid~~~--~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSN-TGNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCC-CCCeeEEeecceeEEEEEecch--hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 4666666666644321 1245899999999999999998 78899999999999999999986 89999999999999
Q ss_pred cCCCCCeeeeecc---ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 111 NCSSDGTCIRTLR---QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 111 d~~~~~~~~~~l~---~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
++ .+..|+..+. +|.+.|.++.|+ .++.+++++|.|.+|++|++............. .+.......+
T Consensus 164 nI-~~~~Cv~VfGG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~------~~~~~~t~~p-- 233 (385)
T KOG1034|consen 164 NI-QTDVCVAVFGGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSI------TYSPNKTTRP-- 233 (385)
T ss_pred ec-cCCeEEEEecccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhc------ccCCCCccCc--
Confidence 98 5688887764 699999999999 789999999999999999998543322211110 0100000000
Q ss_pred ceeecCCCCcccccccCCCCccc-eeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCce-------------e
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVP-IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDP-RTGSK-------------T 252 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~-~~~~~-------------~ 252 (764)
+......... .+..-|...|-|+.|- |+++++-+-++.|..|-. +-++. +
T Consensus 234 -------------fpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~ 298 (385)
T KOG1034|consen 234 -------------FPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL 298 (385)
T ss_pred -------------CCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeee
Confidence 0000000011 1345688888899988 789999999999999987 22222 2
Q ss_pred EEeccCCcCeEEE--EEcCCCCEEEEEeCCCcEEEEeCCCCeee--EEEeee--cCceEEEEEcCCCCEEEEecCCCcEE
Q 046871 253 IKLRGHTDNIRSL--LLDSTGRYCLSGSSDSMIRLWDLGQQRCI--HSYAVH--TDSVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 253 ~~l~~h~~~V~~l--~~spdg~~l~sgs~Dg~I~iwdl~~~~~~--~~l~~h--~~~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
..+.-....|.-+ +|++-++.|+.|...|.|.+||++...+. .++..+ ...|...+|+.|+.+|+....|++|.
T Consensus 299 ~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 299 GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW 378 (385)
T ss_pred eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEE
Confidence 2233333444444 45667889999999999999999876552 233322 24589999999999999999999999
Q ss_pred EEeCC
Q 046871 327 LTDLA 331 (764)
Q Consensus 327 iwd~~ 331 (764)
-||..
T Consensus 379 rwdrv 383 (385)
T KOG1034|consen 379 RWDRV 383 (385)
T ss_pred EEEee
Confidence 99853
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=8.5e-18 Score=166.91 Aligned_cols=243 Identities=21% Similarity=0.303 Sum_probs=183.9
Q ss_pred eeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCC------eeeeeccccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 78 ATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDG------TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 78 ~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~------~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
-.+.+|+++|.++.|+|.+ .++|||.|.+|.||.+...+ +.+..+.+|...|--++|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3467999999999999864 89999999999999985433 346678899999999999988889999999999
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
+|.+|++.++. ....+. |.+.|+++.|+.+|
T Consensus 155 ~v~iWnv~tge------------------------------------------------ali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 155 TVSIWNVGTGE------------------------------------------------ALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred eEEEEeccCCc------------------------------------------------eeeecC-CCCeEEEEEeccCC
Confidence 99999999852 222233 99999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeccCCc-CeEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCe---eeEEEeeecC
Q 046871 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD-NIRSLLLDSTGRYCLSGS---SDSMIRLWDLGQQR---CIHSYAVHTD 302 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~sgs---~Dg~I~iwdl~~~~---~~~~l~~h~~ 302 (764)
.+|++++.|+.|||||.++++.+..-.+|.+ .-..+.|-.+|..+-||. ++..+.+||..+.. ..+++. ...
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSn 264 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSN 264 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCC
Confidence 9999999999999999999999998888876 233344667888555554 47789999976543 233443 234
Q ss_pred ceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCeEE----EEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCC
Q 046871 303 SVWALASTPTFSHVY-SGGRDLSLYLTDLATRESL----LLCTGEHPILQLALHDDNIWVATTDSSVHRWPAE 370 (764)
Q Consensus 303 ~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~~----~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~ 370 (764)
.|.--.|++|.+.++ +|-.|+.|+.|.+....+. ..+....+-..+.|.|..-+-.+..-..++|.+.
T Consensus 265 Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~Vs~cEI~rfyKl~ 337 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLH 337 (472)
T ss_pred ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccccccchHHHHHHHHHhh
Confidence 465666799999887 5557999999999876633 2344456667777777663323333333444443
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.8e-19 Score=198.62 Aligned_cols=248 Identities=21% Similarity=0.234 Sum_probs=196.6
Q ss_pred CCeeEEEeecccccCCCc----EEEEEeCCCcEEEEeCCC----CCCccceeecccccceeEEEEeCCC--eEEEEeCCC
Q 046871 36 AGINCLAVLKSSVSNGVD----YLFTGSRDGTLKRWSLAD----DVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDT 105 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~----~L~sgs~Dg~I~iWd~~~----~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg 105 (764)
...+.|+|. +.+. +||.|..||.|.+||... .....+.++..|.+.|..+.|++.+ .|++|+.||
T Consensus 65 ~rF~kL~W~-----~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 65 NRFNKLAWG-----SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccceeeeec-----ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 456778884 4443 588899999999999764 3345678888999999999999873 899999999
Q ss_pred cEEEecCCCCCeeeee-ccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 106 TLKTWNCSSDGTCIRT-LRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~-l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
.|.|||+......... -....+.|.+++|+....++|++++.+|.+.|||++..+......
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls------------------ 201 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS------------------ 201 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc------------------
Confidence 9999998553332222 122457899999997788999999999999999998753222111
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCC---eEEEEeCCCC-ceeEEeccCC
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEK---VVRVWDPRTG-SKTIKLRGHT 259 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg---~I~iwd~~~~-~~~~~l~~h~ 259 (764)
.......+..++|+|+. ..|++++.|. .|.+||+|.- ..++.+.+|.
T Consensus 202 ----------------------------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 202 ----------------------------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred ----------------------------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 11112347789999965 4566665543 6999999865 5677788999
Q ss_pred cCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCe
Q 046871 260 DNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS-HVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 260 ~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~-~l~sgs~Dg~I~iwd~~~~~ 334 (764)
..|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+....+.+..+.|.|... .|++++.||.|.|+.+.+..
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999966 8899999999999999999999999998888999999999766 77888999999999987654
No 166
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.1e-17 Score=175.28 Aligned_cols=332 Identities=18% Similarity=0.205 Sum_probs=215.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC----eEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN----TLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~----~l~s~s~Dg~V~ 108 (764)
|-+..+...+. ||+|+++|+.... ..|.||...+ +.++..+.+|..++..+.+.+.. ++++++.||+|+
T Consensus 13 gg~n~~~~~av----fSnD~k~l~~~~~-~~V~VyS~~T--g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 13 GGRNGNKSPAV----FSNDAKFLFLCTG-NFVKVYSTAT--GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred ccccceecccc----cccCCcEEEEeeC-CEEEEEecch--HhhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence 44445555554 6999999987765 5999999999 88899999999999999998753 678999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEec---CCCcEEEEEeCC------------CeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAE---KNSNIVASGGLG------------AEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p---~~~~~lasg~~d------------g~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
+||. .++..++++..+- .+..+.+.| .....+..+..| ++++-+.+.+...... +.. +
T Consensus 86 vwd~-~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~--d~~---~ 158 (792)
T KOG1963|consen 86 VWDW-SDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG--DFL---K 158 (792)
T ss_pred EecC-CCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccch--hhh---h
Confidence 9997 5677777765432 233333321 111111122112 1222222221100000 000 0
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCcc---ceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV---PIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT-- 248 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~-- 248 (764)
.......-..........+.....+..+........ ......|...+++.+++|.++++++|..||.|.+|.--.
T Consensus 159 ~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 159 EHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred hhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc
Confidence 000000000000011111112222333333332211 112345666789999999999999999999999996332
Q ss_pred C--ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEE
Q 046871 249 G--SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 249 ~--~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
. .....+.-|.+.|.+++|+++|.+|++|+..+.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|+.|.
T Consensus 239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 1 2345667799999999999999999999999999999999988 444555678899999999999999999999999
Q ss_pred EEeCCCCeEEEEeec------------CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 327 LTDLATRESLLLCTG------------EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 327 iwd~~~~~~~~~~~~------------~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
+-...+.+....+.+ .+-.+.++++|.. ++..+..+.|.+||+.+...+..++
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 988765554433332 2235677888833 8888889999999998776655443
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.5e-18 Score=179.93 Aligned_cols=268 Identities=22% Similarity=0.318 Sum_probs=191.6
Q ss_pred eeEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC------CCCccceeecccccceeEEEEe
Q 046871 20 KRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD------DVGSCSATFESHVDWVNDAVLV 93 (764)
Q Consensus 20 ~~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~------~~~~~~~~l~~h~~~V~~v~~s 93 (764)
..++|.++ -|..+|..++| .+-...|++++.||+|++|+++. ...+.+.+|.+|.++|.|+++.
T Consensus 284 w~ik~tl~-----s~~d~ir~l~~-----~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 284 WNIKFTLR-----SHDDCIRALAF-----HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred cceeeeee-----cchhhhhhhhc-----CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec
Confidence 45666555 79999999999 46678999999999999999932 1246788999999999999999
Q ss_pred CCC-eEEEEeCCCcEEEecCCCCC---------eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 94 GDN-TLVSCSSDTTLKTWNCSSDG---------TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 94 ~d~-~l~s~s~Dg~V~vWd~~~~~---------~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
.++ .+++|+-||+|+.|++..+. .....+.+|.+.|+.++++ .....|++++.||+++.|+...... .
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccCCcCc-c
Confidence 987 89999999999999654221 2344678999999999999 7788899999999999999876433 1
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcccee-------ccCCCCcEEEEEEcCCCCEEEEEe
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIA-------AKGHKESVYALAMNDSGNLLVSGG 236 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~V~~l~~sp~g~~l~sgs 236 (764)
......+......+......+.. ...+................... .......+.-+.++|.+.+.+++.
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~~a~---~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSRPAH---SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH 508 (577)
T ss_pred ccCCccccCCcceEeeccchhHh---hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc
Confidence 11111111111111100000000 00000000000000000000010 111123466788889999999999
Q ss_pred CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC
Q 046871 237 TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD 302 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~ 302 (764)
.|+.|+++|..+++.+.....|...++++++.|+|-+|++++.|+.+++|.+....|+.....|..
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 999999999999999999999999999999999999999999999999999988888887776653
No 168
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=4.3e-19 Score=190.46 Aligned_cols=282 Identities=20% Similarity=0.317 Sum_probs=221.0
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||..+|.|..| +..|.++++|+.|..++||..++ ..+...+.||.+.|++++.+.++ +++++|.|..|++|
T Consensus 187 lgH~naVyca~f-----Drtg~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 187 LGHRNAVYCAIF-----DRTGRYIITGSDDRLVKIWSMET--ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred Hhhhhheeeeee-----ccccceEeecCccceeeeeeccc--hhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 489999999999 57899999999999999999888 88999999999999999999887 78999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
.+ .++.++..+.+|++.|++++|+|.. +.+.||++++||.+-. +.....
T Consensus 260 rl-~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~--~~~y~p----------------------- 308 (1113)
T KOG0644|consen 260 RL-PDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLE--PRIYVP----------------------- 308 (1113)
T ss_pred ec-CCCchHHHHhccccceeeeccCccc-----cCCCCCceEecccccc--ccccCC-----------------------
Confidence 97 6789999999999999999999532 7788999999998721 000000
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
.. . ....+..+.++.|...+..+++|+.|+.-+.|.+.... .+...+.-+..+.|
T Consensus 309 -----------------rp-~-~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 309 -----------------RP-L-KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSD 363 (1113)
T ss_pred -----------------CC-C-CcccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEecccc
Confidence 00 0 01123556777787788899999999998888764321 12221222222222
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCeEEEEee-cCCCeEE
Q 046871 271 -GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLATRESLLLCT-GEHPILQ 347 (764)
Q Consensus 271 -g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~ 347 (764)
..+.+++-.+..+.+|++.+|...+.+.+|.+.+..+.++|-...++ +++.||...|||+-.|.++..+. ....+..
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d 443 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVD 443 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeec
Confidence 24667777888999999999999999999999999999999766655 99999999999999888776554 3556778
Q ss_pred EEeeCCc--eEEEeCCCcEEEeeCCCCCCce
Q 046871 348 LALHDDN--IWVATTDSSVHRWPAEGRNPQK 376 (764)
Q Consensus 348 l~~spd~--l~~~s~dg~I~iwd~~~~~~~~ 376 (764)
..|+++| ++....-|.++|.....++.+.
T Consensus 444 ~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 444 GKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred cccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 8999998 6666667889998876655443
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=6.8e-18 Score=163.50 Aligned_cols=238 Identities=20% Similarity=0.286 Sum_probs=186.1
Q ss_pred CeeEEEeecc--cccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccc---eeEEEEeCCCeEEEEeCCCcEEEec
Q 046871 37 GINCLAVLKS--SVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDW---VNDAVLVGDNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 37 ~V~~l~~~~~--~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~---V~~v~~s~d~~l~s~s~Dg~V~vWd 111 (764)
.|..-+|.+. +-.|+..++|+.+++.-|++||.-+++.++....-.|.+. ..+++|+|||.-+.++....|+++|
T Consensus 106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFd 185 (406)
T KOG2919|consen 106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFD 185 (406)
T ss_pred EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEee
Confidence 4666666642 2357788999999999999999999555444444445554 4579999999666677789999999
Q ss_pred CCCCCeeee--ec-----cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 112 CSSDGTCIR--TL-----RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 112 ~~~~~~~~~--~l-----~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
+...+.... .. .+..+-|.|++|+|.+...++.|+....+-|+.-...
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------------------------- 240 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------------------------- 240 (406)
T ss_pred ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-------------------------
Confidence 866554221 11 2346789999999988999999999998888876542
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC-ceeEEeccCCc-C
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-EKVVRVWDPRTG-SKTIKLRGHTD-N 261 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~~~-~~~~~l~~h~~-~ 261 (764)
.....+.+|.+.|+.++|.++|+.|++|.. |-.|..||++.. ..+..+..|.+ .
T Consensus 241 -----------------------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 241 -----------------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred -----------------------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 233456799999999999999999999875 668999999864 56777877766 3
Q ss_pred eEEEE--EcCCCCEEEEEeCCCcEEEEeCCC-CeeeEEEeeecCceEEEEEcCCCCEEEEecCC
Q 046871 262 IRSLL--LDSTGRYCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDSVWALASTPTFSHVYSGGRD 322 (764)
Q Consensus 262 V~~l~--~spdg~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D 322 (764)
-..|. ..|++++|++|+.||.|++||++. +..+..+..|.+.++.++++|--.++++++..
T Consensus 298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 298 NQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 33444 468899999999999999999988 77788888899999999999998888887754
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=4.1e-17 Score=162.94 Aligned_cols=301 Identities=21% Similarity=0.337 Sum_probs=210.0
Q ss_pred ccceeEEEEeCCC--eEEEEeCCCcEEEecCCCC---C-----eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 84 VDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSD---G-----TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 84 ~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~---~-----~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
..+|..+.|.++. .+++|+.|..|++|.+... + .....+..|...|+++.|+ +++++||+|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeeeecCCCceEEE
Confidence 4568888888763 8999999999999986432 1 2345678999999999999 88999999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
|....-... ..+. ..-...........+.+|...|+.++|+|++.+++
T Consensus 92 Wk~~~~~~~--~~d~------------------------------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 92 WKQGDVRIF--DADT------------------------------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred EEecCcCCc--cccc------------------------------hhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 987641100 0000 00000111233455778999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe---------------
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA--------------- 298 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~--------------- 298 (764)
+|+-|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+++...+.++...
T Consensus 140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 99999999999999999999999999999999999999999999999987777765433222211
Q ss_pred ----eecC----ceEEEEEcCCCCEEEEecC----CCcE-----EEEeCCCC-eEEEEeec-CCCeEEEEee--------
Q 046871 299 ----VHTD----SVWALASTPTFSHVYSGGR----DLSL-----YLTDLATR-ESLLLCTG-EHPILQLALH-------- 351 (764)
Q Consensus 299 ----~h~~----~V~~l~~spd~~~l~sgs~----Dg~I-----~iwd~~~~-~~~~~~~~-~~~V~~l~~s-------- 351 (764)
.|.+ -...++|+|+|.++++.+. ++.+ ++++-..- ++...+.. ..+...+.++
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence 1222 2456789999999987653 2333 44432211 11111111 2222233222
Q ss_pred ----------CCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC
Q 046871 352 ----------DDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG 420 (764)
Q Consensus 352 ----------pd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 420 (764)
|-+ +++....+.|++||.+...+..... .+.| .+
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~--------nihy---------------------------~~ 344 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD--------NIHY---------------------------SA 344 (434)
T ss_pred ccccccccccccceEEEEeecceEEEeccccccceEEEe--------eeee---------------------------ee
Confidence 233 3444455679999988877765543 2333 34
Q ss_pred ceEeEEecCCcEEEEeeCCCcEEEEEccccEE
Q 046871 421 IVQHEILNNRRHVLTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 421 i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~ 452 (764)
|+.++|++||..|+..+.||-..+--++..++
T Consensus 345 iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 345 ITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 88999999999999999999877766654443
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.7e-17 Score=150.76 Aligned_cols=243 Identities=19% Similarity=0.227 Sum_probs=184.7
Q ss_pred eeEEEEeCCC-eEEEEeCCCcEEEecCCC---------CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 046871 87 VNDAVLVGDN-TLVSCSSDTTLKTWNCSS---------DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 87 V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~---------~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl 156 (764)
|..-+++|.+ +|+.|+.+|+|.+..+.+ ....+...++|.++|..++|. ..+|++|+ ||.|+-|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEeee
Confidence 4445678876 889999999999998732 123445668999999999998 56777776 499999987
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG 236 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs 236 (764)
+......... .+|.... ....-...--.|.++...|..+-++.++
T Consensus 89 ~E~~es~~~K--------------------------------~lwe~~~---P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 89 NEEEESLATK--------------------------------RLWEVKI---PMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred hhhhhhccch--------------------------------hhhhhcC---ccccCcccCCccceeEeccCCCcEEEec
Confidence 6532210000 0111000 0000011223588999998777777777
Q ss_pred CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee---------ec-CceEE
Q 046871 237 TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV---------HT-DSVWA 306 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~---------h~-~~V~~ 306 (764)
.|+.++-||+++|+..+.+++|++.|.++.--.....+++|+.||++|+||.+++++++.+.. |. ..|-+
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga 213 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA 213 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE
Confidence 999999999999999999999999999999866667899999999999999999999988753 22 23556
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 307 LASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 307 l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
++.+ ..++++|+ ...+.+|.++..++..++.-..++..+.|..|-+++++..+.|.-|.+..
T Consensus 214 la~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 214 LAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred Eecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeecc
Confidence 6554 45788776 56799999999999999999999999999999999999999999998754
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=4.8e-17 Score=161.60 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=180.5
Q ss_pred CCCcEEEecCCCCCee---eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 103 SDTTLKTWNCSSDGTC---IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~~---~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
..|...|--+...|+. .-.+.+|.++|..++|+|.+.+.+|+|+.|.+|.+|++.........
T Consensus 55 gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-------------- 120 (472)
T KOG0303|consen 55 GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-------------- 120 (472)
T ss_pred CCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc--------------
Confidence 3345555544444433 33567899999999999999999999999999999999764222111
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccC
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH 258 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 258 (764)
......+.+|...|--++|+| -.+.|++++.|..|.+||+.+|+.+..+. |
T Consensus 121 ---------------------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-h 172 (472)
T KOG0303|consen 121 ---------------------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-H 172 (472)
T ss_pred ---------------------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-C
Confidence 233456889999999999999 45789999999999999999999999988 9
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc-eEEEEEcCCCCEEEEec---CCCcEEEEeCCCCe
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS-VWALASTPTFSHVYSGG---RDLSLYLTDLATRE 334 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~-V~~l~~spd~~~l~sgs---~Dg~I~iwd~~~~~ 334 (764)
.+.|.++.|+.||.+|++.+.|..|||||.++++.+..-.+|.+. -..+.|-.++..+-||- ++..+-+||..+-+
T Consensus 173 pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 173 PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 999999999999999999999999999999999999998888764 44556777887444442 47789999976433
Q ss_pred ---EEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCC
Q 046871 335 ---SLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 335 ---~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~ 374 (764)
....+.....|.---+.+|. .++|-.|+.||-|.+....+
T Consensus 253 eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 253 EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 34445556677766778877 44555799999999987654
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=160.78 Aligned_cols=196 Identities=16% Similarity=0.271 Sum_probs=153.3
Q ss_pred CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
..++++.+.|+|++||. .+++.+..++++...++.+.|... ..+.+.+|+.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---------- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---------- 109 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----------
Confidence 36888889999999997 458889999999999999999843 578899999999999999987422211
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCC-CcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK-ESVYALAMNDSGNLLVSGGT----EKVVRVWDPRTG 249 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~V~~l~~sp~g~~l~sgs~----dg~I~iwd~~~~ 249 (764)
.....+. .+..+++.+..++++++|.. +-.|.+||+|..
T Consensus 110 ------------------------------------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 110 ------------------------------------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred ------------------------------------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 1122222 45677777777888888753 668999999988
Q ss_pred ce-eEEe-ccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe----eeEEEeeecCceEEEEEcCCC-CEEEEecC
Q 046871 250 SK-TIKL-RGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQR----CIHSYAVHTDSVWALASTPTF-SHVYSGGR 321 (764)
Q Consensus 250 ~~-~~~l-~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~----~~~~l~~h~~~V~~l~~spd~-~~l~sgs~ 321 (764)
+. +..+ ..|.+.|+++.|.| +.++|++||.||-|.+||+.... .++++ .|...|.++.|..++ +.|++-+.
T Consensus 154 qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH 232 (376)
T KOG1188|consen 154 QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTH 232 (376)
T ss_pred cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEc
Confidence 76 5544 57999999999999 55789999999999999996532 23333 377789999997655 56999999
Q ss_pred CCcEEEEeCCCCeEEEEe
Q 046871 322 DLSLYLTDLATRESLLLC 339 (764)
Q Consensus 322 Dg~I~iwd~~~~~~~~~~ 339 (764)
..+..+|++..+.....+
T Consensus 233 ~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 233 METFAIYELEDGSEETWL 250 (376)
T ss_pred cCceeEEEccCCChhhcc
Confidence 999999999988754433
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.9e-17 Score=177.42 Aligned_cols=285 Identities=20% Similarity=0.242 Sum_probs=201.8
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccc---ccceeEEEEeCCC---eEEEEeCCCc
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESH---VDWVNDAVLVGDN---TLVSCSSDTT 106 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h---~~~V~~v~~s~d~---~l~s~s~Dg~ 106 (764)
|....-..+.| +|-...++++...-.|++||.+. +++...|..+ ...|+++.+.++. .+++|+.||.
T Consensus 1062 ~n~~~pk~~~~-----hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1062 GNNQPPKTLKF-----HPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred cCCCCCceeee-----cCCCceeEEcCCcceEEEEeccc--CceeccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence 33334445555 57778899988777999999988 5556666544 4579999998652 8999999999
Q ss_pred EEEecCCCCC----eeeeecc---cc----CCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 107 LKTWNCSSDG----TCIRTLR---QH----SDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 107 V~vWd~~~~~----~~~~~l~---~h----~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
|+||+--.+. +.+.... ++ .+.-.-+.|. ....+|+++|.-+.|+|||........
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tGd~r~IRIWDa~~E~~~~------------ 1201 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTGDVRSIRIWDAHKEQVVA------------ 1201 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecCCeeEEEEEecccceeEe------------
Confidence 9999843322 2222221 11 1112345676 445556666668899999998632211
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc---e
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGS---K 251 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~---~ 251 (764)
....+....|+++.-+. .|+++++|..||.|++||.+... .
T Consensus 1202 -----------------------------------diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1202 -----------------------------------DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred -----------------------------------ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 11222344566665443 57999999999999999988653 4
Q ss_pred eEEeccCCcC--eEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCeeeE--EEeeec--C-ceEEEEEcCCCCEEEEecCCC
Q 046871 252 TIKLRGHTDN--IRSLLLDSTGRY-CLSGSSDSMIRLWDLGQQRCIH--SYAVHT--D-SVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 252 ~~~l~~h~~~--V~~l~~spdg~~-l~sgs~Dg~I~iwdl~~~~~~~--~l~~h~--~-~V~~l~~spd~~~l~sgs~Dg 323 (764)
+...+.|++. |..+.+.+.|-- |++|+.||.|++||++...... ++..|- + ..+++..|++...+++|+. +
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence 6677889887 999999987754 9999999999999998743222 223333 4 4899999999999999998 9
Q ss_pred cEEEEeCCCCeEEEEee-------cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 324 SLYLTDLATRESLLLCT-------GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 324 ~I~iwd~~~~~~~~~~~-------~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
.|+||++...+.-.... ....+.|++|||-. +++|..|+.|.||......
T Consensus 1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999997543322111 23468999999999 8888889999999876543
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=4e-15 Score=163.25 Aligned_cols=329 Identities=28% Similarity=0.445 Sum_probs=238.7
Q ss_pred eecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccC-CceEEEEE-ecCCCc-EEEEEeC-CCeEEE
Q 046871 79 TFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHS-DYVTCLAA-AEKNSN-IVASGGL-GAEVFI 153 (764)
Q Consensus 79 ~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~-~~V~~l~~-~p~~~~-~lasg~~-dg~I~i 153 (764)
.+..|...+..+.+.+.+ .++.++.|+.+.+|+..........+..+. ..+..+.+ . .+.. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS-PDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEEC-CCcceEEeccCCCCccEEE
Confidence 456789999999999887 677788899999999744332566666544 36777776 5 4454 5555444 999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
||.... .........|...|..++|+|++..++
T Consensus 139 ~~~~~~-----------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 171 (466)
T COG2319 139 WDLSTP-----------------------------------------------GKLIRTLEGHSESVTSLAFSPDGKLLA 171 (466)
T ss_pred EEecCC-----------------------------------------------CeEEEEEecCcccEEEEEECCCCCEEE
Confidence 999751 122344678899999999999999888
Q ss_pred EEeC-CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeeE-EEeeecCceEEEEEc
Q 046871 234 SGGT-EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQRCIH-SYAVHTDSVWALAST 310 (764)
Q Consensus 234 sgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~~~~-~l~~h~~~V~~l~~s 310 (764)
+++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~ 250 (466)
T COG2319 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS 250 (466)
T ss_pred ecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC
Confidence 8885 99999999999889999999999999999999998 55555999999999998888888 688888875 44899
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCeE-EEEe-ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeee--cCCcc
Q 046871 311 PTFSHVYSGGRDLSLYLTDLATRES-LLLC-TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQ--RGGSF 384 (764)
Q Consensus 311 pd~~~l~sgs~Dg~I~iwd~~~~~~-~~~~-~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~--~~~~~ 384 (764)
|++.++++++.|+.+++|++..... +... .+...+.++.|+|++ +++++.|+.+.+|+........... .+..
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 329 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG- 329 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC-
Confidence 9998999999999999999986664 3333 457889999999965 6668888889999888776555544 3332
Q ss_pred eecccccccc--cc----ccCCCCCcccCCCCC-CccccCCCCceEeEEecCCcEEEE-eeCCCcEEEEEccccEEeeec
Q 046871 385 IAGNLSFSRA--RV----SLEGSTPVSSRFKEP-NFTIPGIPGIVQHEILNNRRHVLT-KDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 385 ~~~~~~~s~~--~~----~~~~~~~~~~~~~~~-~~~i~g~~~i~~~~~s~dg~~l~t-~s~dG~V~lWdi~tg~~i~~~ 456 (764)
....+.+.+. .. ..++....+...... .........+..+.+.+ ...+.. +..++.+.+|+.........+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred ceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 2334444211 01 111222222222211 11222222266777777 444444 788999999999988888766
Q ss_pred CC
Q 046871 457 GK 458 (764)
Q Consensus 457 ~~ 458 (764)
..
T Consensus 409 ~~ 410 (466)
T COG2319 409 DG 410 (466)
T ss_pred cC
Confidence 44
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=5.9e-17 Score=161.84 Aligned_cols=286 Identities=18% Similarity=0.198 Sum_probs=206.0
Q ss_pred CCCeeEEEeecccccCCCc-EEEEEeCCCcEEEEeCCCCC-------CccceeecccccceeEEEEeCCC-eEEEEeCCC
Q 046871 35 CAGINCLAVLKSSVSNGVD-YLFTGSRDGTLKRWSLADDV-------GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT 105 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~-~L~sgs~Dg~I~iWd~~~~~-------~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg 105 (764)
..+|.++.|.+ ++. .|+|||.|..|+||.++... .+....+..|...|+++.|+|+| .|+||+.+|
T Consensus 13 ~~pv~s~dfq~-----n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQK-----NSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEecc-----CcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 34789999853 333 99999999999999886532 23456778999999999999997 899999999
Q ss_pred cEEEecCCC-------C--------CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCc
Q 046871 106 TLKTWNCSS-------D--------GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170 (764)
Q Consensus 106 ~V~vWd~~~-------~--------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~ 170 (764)
.|.+|.... . ....+.+.+|...|..++|+ ++++++++++.|..+++||+..+
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~~G----------- 155 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVHAG----------- 155 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEeccc-----------
Confidence 999998530 1 12345677899999999999 89999999999999999999874
Q ss_pred CCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 046871 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250 (764)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~ 250 (764)
.....+..|...+..++|.|-++++++-+.|...+.+++...+
T Consensus 156 -------------------------------------~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 156 -------------------------------------QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred -------------------------------------eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 3345577889999999999999999998888877777665433
Q ss_pred eeEEec--------c-----------CC----cCeEEEEEcCCCCEEEEEeC----CC-----cEEEEeCCC-CeeeEEE
Q 046871 251 KTIKLR--------G-----------HT----DNIRSLLLDSTGRYCLSGSS----DS-----MIRLWDLGQ-QRCIHSY 297 (764)
Q Consensus 251 ~~~~l~--------~-----------h~----~~V~~l~~spdg~~l~sgs~----Dg-----~I~iwdl~~-~~~~~~l 297 (764)
.+.... + |. .-.+.++|+|||.++++.+. .+ +.++|+-.. .++...+
T Consensus 199 ~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l 278 (434)
T KOG1009|consen 199 VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL 278 (434)
T ss_pred eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec
Confidence 222111 0 11 13455789999999987642 22 234444321 2233333
Q ss_pred eeecCceEEEEEcC------------------CCCEEEEecCCCcEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc--e
Q 046871 298 AVHTDSVWALASTP------------------TFSHVYSGGRDLSLYLTDLATRESLLLCT--GEHPILQLALHDDN--I 355 (764)
Q Consensus 298 ~~h~~~V~~l~~sp------------------d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~--l 355 (764)
.....++..+.|+| -+-.++.+ ....|++||.++..++.... |-..|+.++|++|| +
T Consensus 279 p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l 357 (434)
T KOG1009|consen 279 PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVL 357 (434)
T ss_pred CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEE
Confidence 33333444444443 22233444 45689999999988877665 57789999999999 8
Q ss_pred EEEeCCCcEEEeeCCCCCCc
Q 046871 356 WVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 356 ~~~s~dg~I~iwd~~~~~~~ 375 (764)
++.+.||...+-.++..+.-
T Consensus 358 ~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 358 LVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeccCCceEEEEEcchhcc
Confidence 99999998777766655443
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=1.6e-16 Score=166.68 Aligned_cols=237 Identities=17% Similarity=0.269 Sum_probs=185.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||.+.|+|+++ |.||+++|+|+.|..|.+|+-.-. + +.. -.|.+.|.|+.|+|-+ .|++|+- ...-+|
T Consensus 50 KgHKDtVycVAy-----s~dGkrFASG~aDK~VI~W~~klE-G--~Lk-YSH~D~IQCMsFNP~~h~LasCsL-sdFglW 119 (1081)
T KOG1538|consen 50 KGHKDTVYCVAY-----AKDGKRFASGSADKSVIIWTSKLE-G--ILK-YSHNDAIQCMSFNPITHQLASCSL-SDFGLW 119 (1081)
T ss_pred ccccceEEEEEE-----ccCCceeccCCCceeEEEeccccc-c--eee-eccCCeeeEeecCchHHHhhhcch-hhcccc
Confidence 699999999999 899999999999999999986531 1 222 3599999999999986 6777765 457889
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
... .+.+...+ ....+.+++|. .|+.+++.|-.+|+|.+-+-....
T Consensus 120 S~~--qK~V~K~k-ss~R~~~CsWt-nDGqylalG~~nGTIsiRNk~gEe------------------------------ 165 (1081)
T KOG1538|consen 120 SPE--QKSVSKHK-SSSRIICCSWT-NDGQYLALGMFNGTISIRNKNGEE------------------------------ 165 (1081)
T ss_pred Chh--hhhHHhhh-hheeEEEeeec-CCCcEEEEeccCceEEeecCCCCc------------------------------
Confidence 852 22222221 34568899999 899999999999999987543210
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-----NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-----~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
...+....+.+++|++++|+|.. ..+++.....++.+|.+ +|+.+.+-+.-.-...|+
T Consensus 166 ----------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 166 ----------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI 228 (1081)
T ss_pred ----------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh
Confidence 11112234568899999999843 47888888889998887 466665444444456789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
.+.++|.+++.|+.|+.+++|- +.|-.+.++......||.++..|++++++.|+.||+|..|++
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999999999999999996 467778888777889999999999999999999999999986
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.9e-16 Score=169.00 Aligned_cols=296 Identities=18% Similarity=0.255 Sum_probs=216.5
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC--CCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD--DVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~--~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
..|...++|.++ ||+++++|+|..||.|.+|.-.. +.......+.=|.+.|++++|+++| +|+||+..|.+.
T Consensus 202 ~~Htf~~t~~~~-----spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 202 VHHTFNITCVAL-----SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred hhhcccceeEEe-----ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 458888999999 89999999999999999996432 3344567778899999999999998 999999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+|.+.. ++ .+.+..-..+|..+.++ +++++.+....|..|.+....+.............
T Consensus 277 ~Wq~~T-~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~----------------- 336 (792)
T KOG1963|consen 277 LWQLET-GK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP----------------- 336 (792)
T ss_pred EEeecC-CC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhhhccCccCC-----------------
Confidence 999854 33 45566677899999999 78999988889999999887653222111000000
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec-----------c
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR-----------G 257 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-----------~ 257 (764)
.........+-.+.++++|..+.++-.+..|.|.+||+.+.+.+.++. .
T Consensus 337 --------------------~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 337 --------------------TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred --------------------CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 000012224456788899977788888899999999998887776653 1
Q ss_pred CCcCeEEEEEcCCCCEEEEEe--------CCC--cEEEEeCCCCee----eEE-EeeecCceEEEEE-cCCCC-EEEEec
Q 046871 258 HTDNIRSLLLDSTGRYCLSGS--------SDS--MIRLWDLGQQRC----IHS-YAVHTDSVWALAS-TPTFS-HVYSGG 320 (764)
Q Consensus 258 h~~~V~~l~~spdg~~l~sgs--------~Dg--~I~iwdl~~~~~----~~~-l~~h~~~V~~l~~-spd~~-~l~sgs 320 (764)
+...+++++.+..|.+++|.- .|| .+++|-...... ... ...|...+...++ ++... .+++++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 233677888888899998863 333 477886543322 222 2357776666665 34333 899999
Q ss_pred CCCcEEEEeCCCCe------EEEEe-----ecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCC
Q 046871 321 RDLSLYLTDLATRE------SLLLC-----TGEHPILQLALHDDN-IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 321 ~Dg~I~iwd~~~~~------~~~~~-----~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~ 372 (764)
.||.+++|-+...+ ....+ .+..+++.++|+.|| +++.+.+++|.+||..+.
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 99999999884322 11111 157789999999999 999999999999999884
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=3.7e-16 Score=174.96 Aligned_cols=330 Identities=16% Similarity=0.176 Sum_probs=214.7
Q ss_pred CccceeecccccceeEEEEeCC--CeEEEEeCCCcEEEecCCCC------CeeeeeccccCCceEEEEEecCCCcEEEEE
Q 046871 74 GSCSATFESHVDWVNDAVLVGD--NTLVSCSSDTTLKTWNCSSD------GTCIRTLRQHSDYVTCLAAAEKNSNIVASG 145 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d--~~l~s~s~Dg~V~vWd~~~~------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg 145 (764)
+..+..+..|...|..++.+++ .++++||.||+|++|+...- .+...++......+.++.+. .+++.+|.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVS 1116 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEE
Confidence 6778889999999999998865 39999999999999997431 12233444456788999999 789999999
Q ss_pred eCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC-CCCcEEE-E
Q 046871 146 GLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG-HKESVYA-L 223 (764)
Q Consensus 146 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~V~~-l 223 (764)
+.||.|.+.+++........ ......... ..+.+.+ -
T Consensus 1117 t~DG~v~~~~id~~~~~~~~-----------------------------------------~~~~ri~n~~~~g~vv~m~ 1155 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRV-----------------------------------------ATQVRIPNLKKDGVVVSMH 1155 (1431)
T ss_pred cCCCeEEEEEccccccccce-----------------------------------------eeeeecccccCCCceEEee
Confidence 99999999999863111000 000000111 1222322 2
Q ss_pred EEcC-CCC-EEEEEeCCCeEEEEeCCCCceeEEec--cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-
Q 046871 224 AMND-SGN-LLVSGGTEKVVRVWDPRTGSKTIKLR--GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA- 298 (764)
Q Consensus 224 ~~sp-~g~-~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~- 298 (764)
+|.. .+. .++.+...+.|..||++.......++ ...+.|++++.+|.+.+++.|+..|.+.+||++-+.++..+.
T Consensus 1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC
Confidence 3322 333 78888889999999999876665543 345789999999999999999999999999999888887775
Q ss_pred eecCceEEEEEcC---CCCEEEEec--CCCcEEEEeCCCCeEEEEeecC---------------------CCeEEEEeeC
Q 046871 299 VHTDSVWALASTP---TFSHVYSGG--RDLSLYLTDLATRESLLLCTGE---------------------HPILQLALHD 352 (764)
Q Consensus 299 ~h~~~V~~l~~sp---d~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~---------------------~~V~~l~~sp 352 (764)
.+..+|..+..+| .....++++ ..+.|.+|++.+|.+...+... ..+.+....+
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK 1315 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC
Confidence 3446777777765 334555444 4778999999988765544321 0133333445
Q ss_pred Cc-eEEEeCCCcEEEeeCCCCCCce-eeecCCcceeccccccccccccCCCCCccc-------------------CCCCC
Q 046871 353 DN-IWVATTDSSVHRWPAEGRNPQK-VFQRGGSFIAGNLSFSRARVSLEGSTPVSS-------------------RFKEP 411 (764)
Q Consensus 353 d~-l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-------------------~~~~~ 411 (764)
.+ +++|+.|..|+.||........ ...++.. .....+.+.......|...+.. +...+
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~-~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~ 1394 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPST-SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGP 1394 (1431)
T ss_pred CceeeecCCccceeeccCCCcccccccccCccc-cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCC
Confidence 55 8999999999999998765442 1111111 1111122222222222211110 00011
Q ss_pred -CccccCCCCceEeEEecCC-cEEEEeeCCCcEEEEE
Q 046871 412 -NFTIPGIPGIVQHEILNNR-RHVLTKDAAGSVKLWE 446 (764)
Q Consensus 412 -~~~i~g~~~i~~~~~s~dg-~~l~t~s~dG~V~lWd 446 (764)
....-++..|+.+++.... .+|++++.||.|++|.
T Consensus 1395 ~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1395 SDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 1122345568888877654 5889999999999993
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-15 Score=142.39 Aligned_cols=263 Identities=16% Similarity=0.216 Sum_probs=185.0
Q ss_pred cccCCCcEEEEEeCCCcEEEEeCCCC--------CCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCee
Q 046871 47 SVSNGVDYLFTGSRDGTLKRWSLADD--------VGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTC 118 (764)
Q Consensus 47 ~~S~d~~~L~sgs~Dg~I~iWd~~~~--------~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~ 118 (764)
++||.+++|+.|..+|.|-+..++.- ....+..+++|.++|+.++|. |..|++|+ ||.|+-|.+....+.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEeeehhhhhh
Confidence 34899999999999999999987641 123455668999999999998 44666666 499999987432221
Q ss_pred e-------eeccccC-----CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 119 I-------RTLRQHS-----DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 119 ~-------~~l~~h~-----~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
. .....|. -.|++|...|. .+-++.++.|+.++-||++++
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~dlE~G--------------------------- 146 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQVDLEDG--------------------------- 146 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEEEecCC---------------------------
Confidence 1 0112233 24788888854 445555568999999999984
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc---------
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG--------- 257 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------- 257 (764)
.....+++|.+.|.++.--.....+++|++||++|+||.++++.+..+..
T Consensus 147 ---------------------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 147 ---------------------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred ---------------------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCc
Confidence 45567899999999999855556799999999999999999998877643
Q ss_pred CC-cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE
Q 046871 258 HT-DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 258 h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
|. ..|-+++.+ ..+|++|+ ...+.+|.++..++..+|. -..++..+.|..| .+++++..+.|.-|.+. |...
T Consensus 206 ~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~ 278 (325)
T KOG0649|consen 206 DWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQ 278 (325)
T ss_pred ccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEE
Confidence 22 245555554 56777775 5679999999999888876 4567778888655 68888888889999875 3333
Q ss_pred EEeec-CCCeEEEEee--CCc-eEEEeCCCcEEEe
Q 046871 337 LLCTG-EHPILQLALH--DDN-IWVATTDSSVHRW 367 (764)
Q Consensus 337 ~~~~~-~~~V~~l~~s--pd~-l~~~s~dg~I~iw 367 (764)
...+. ....+...++ |-. |-.++..+.+.|+
T Consensus 279 a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 279 ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33332 3334444443 333 4444555556555
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.9e-17 Score=171.82 Aligned_cols=283 Identities=20% Similarity=0.267 Sum_probs=202.4
Q ss_pred cEEEEEeCCCcEEEE--eCCC------------------CCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 53 DYLFTGSRDGTLKRW--SLAD------------------DVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iW--d~~~------------------~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
..+++...|...++| ++.. .......++..|.+.|+.+.|.+-. .|++|+.||++++|+
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~Wn 322 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWN 322 (577)
T ss_pred CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhh
Confidence 355666666777777 3221 0122344677899999999999874 999999999999999
Q ss_pred CCC-------CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 112 CSS-------DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 112 ~~~-------~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
+.. .-+.+.++++|.++|.|+++. .++..+++|+.||+|+.|++.....+...
T Consensus 323 Lqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds------------------- 382 (577)
T KOG0642|consen 323 LQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLPPNQDPDDS------------------- 382 (577)
T ss_pred hcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeeeeccCCCCCcccc-------------------
Confidence 822 125678899999999999999 89999999999999999988632111000
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC--cCe
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT--DNI 262 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~--~~V 262 (764)
.........+.+|.+.|+.+++++....|++++.||++++|+...... ..+.... +.-
T Consensus 383 -------------------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 383 -------------------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred -------------------cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 000112234789999999999999989999999999999999876655 3333222 222
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEE---eCCCCeeeEEEeee-------cCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLW---DLGQQRCIHSYAVH-------TDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iw---dl~~~~~~~~l~~h-------~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
.++.+- ...++-...+...+.+ ++.....+..+... ...+..+.++|...+.+++..|+.|+++|..+
T Consensus 443 lsvd~~--ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 443 LSVDRT--SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred ceEeec--cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 344443 2222222223333333 34444434443321 13477888999999999999999999999999
Q ss_pred CeEEEEe-ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCcee
Q 046871 333 RESLLLC-TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 333 ~~~~~~~-~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~ 377 (764)
+..+... .+...++++++.|++ +++++.|+.+++|.+....+...
T Consensus 521 ~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 9987644 477889999999999 88999999999999987665443
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=170.47 Aligned_cols=288 Identities=24% Similarity=0.303 Sum_probs=224.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceee-cccccceeEEEEeCC---CeEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVGD---NTLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~d---~~l~s~s~Dg~V 107 (764)
.+|.+.|+.+.| ...|..|++|+.|..|.+||... ......| .+|...|....|.|. ..+++++.||.|
T Consensus 139 ~~H~GcVntV~F-----N~~Gd~l~SgSDD~~vv~WdW~~--~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 139 NKHKGCVNTVHF-----NQRGDVLASGSDDLQVVVWDWVS--GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred cCCCCccceeee-----cccCceeeccCccceEEeehhhc--cCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 389999999999 68899999999999999999987 3334444 578888888888875 389999999999
Q ss_pred EEecCCCCCee--eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 108 KTWNCSSDGTC--IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 108 ~vWd~~~~~~~--~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
++=.+...+.+ ...+..|.+.|.-++.-|....-|.+++.|+.+.-+|++.........
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~------------------- 272 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV------------------- 272 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-------------------
Confidence 99887555544 345678999999999998888999999999999999998753221110
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCC---CcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce------eEEe
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK---ESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSK------TIKL 255 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~~~~------~~~l 255 (764)
....+. -..++++..|.. ..+++|+.|-.+++||.+.-.. +.++
T Consensus 273 --------------------------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f 326 (559)
T KOG1334|consen 273 --------------------------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF 326 (559)
T ss_pred --------------------------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc
Confidence 011112 256788899854 4899999999999999875422 2233
Q ss_pred cc------CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C----------eeeE-EEeeecCc--eEEEEE-cCCC
Q 046871 256 RG------HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ--Q----------RCIH-SYAVHTDS--VWALAS-TPTF 313 (764)
Q Consensus 256 ~~------h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~--~----------~~~~-~l~~h~~~--V~~l~~-spd~ 313 (764)
.. ..-.|++++|+.++.-|+++-.|-.|+++.-.. | ..+. .+++|... |..+-| -|..
T Consensus 327 ~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs 406 (559)
T KOG1334|consen 327 CPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS 406 (559)
T ss_pred CCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc
Confidence 22 234799999998888888888899999995432 2 2223 37788753 777766 7899
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 314 SHVYSGGRDLSLYLTDLATRESLLLCTG-EHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 314 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
.|+++|+.=|.|.||+-.+++.+..+.. .+-|+||.-+|-- |++.+-|..|+||...+
T Consensus 407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9999999999999999999998887775 4478999999988 78888899999997643
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.8e-16 Score=150.18 Aligned_cols=272 Identities=19% Similarity=0.304 Sum_probs=196.8
Q ss_pred EEEEEe----CCCcEEEEeCCCCCCcc-ceeecccccceeEEEEeCCC--eEEEEeCC-------CcEEEecCCCCC---
Q 046871 54 YLFTGS----RDGTLKRWSLADDVGSC-SATFESHVDWVNDAVLVGDN--TLVSCSSD-------TTLKTWNCSSDG--- 116 (764)
Q Consensus 54 ~L~sgs----~Dg~I~iWd~~~~~~~~-~~~l~~h~~~V~~v~~s~d~--~l~s~s~D-------g~V~vWd~~~~~--- 116 (764)
.+++|. .|+.|.+-+++.+.... ...|..|.+.|+.++-+|-+ .|+++..+ ..+.||.+..+.
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 444553 46889888887654333 45677889999999999864 66666553 246899985432
Q ss_pred -----eeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 117 -----TCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 117 -----~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
+++..+. .+-+.|.|+.|. |++..+++-. |..|.+|++.........
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vae------------------------- 160 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAE------------------------- 160 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchhee-------------------------
Confidence 2233333 455689999999 5888888776 778999999875321000
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCcCeEEEEE
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND--SGNLLVSGGTEKVVRVWDPRTGSKTIKLR-GHTDNIRSLLL 267 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp--~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~ 267 (764)
.....-..+....++-+|+| +|+.+++. .|++++.||+++.++...+. .|...|+.+.|
T Consensus 161 -----------------v~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf 222 (370)
T KOG1007|consen 161 -----------------VLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDF 222 (370)
T ss_pred -----------------ecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccC
Confidence 00000112455677888988 78877776 57899999999988877664 67788999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEeCCC-CeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCe----------
Q 046871 268 DSTGR-YCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRE---------- 334 (764)
Q Consensus 268 spdg~-~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~---------- 334 (764)
+|+.. +|++|+.||.|++||.+. ..+++++.+|...||++.|+|.. ++|++|+.|..|.+|-...-.
T Consensus 223 Npnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~d 302 (370)
T KOG1007|consen 223 NPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDD 302 (370)
T ss_pred CCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccc
Confidence 99876 488999999999999976 45789999999999999999854 567799999999999643210
Q ss_pred --------------------EEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCC
Q 046871 335 --------------------SLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPAE 370 (764)
Q Consensus 335 --------------------~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~ 370 (764)
....-.|++.|++++|+.-. +++-+.||.+.|=.+.
T Consensus 303 ese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 303 ESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 01112357789999998877 7777889988775443
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=155.80 Aligned_cols=269 Identities=18% Similarity=0.272 Sum_probs=190.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-C--eEEEEeCCCcEEEecCCCCCeee-eeccccC-C
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-N--TLVSCSSDTTLKTWNCSSDGTCI-RTLRQHS-D 127 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~--~l~s~s~Dg~V~vWd~~~~~~~~-~~l~~h~-~ 127 (764)
..+|++-..|.|++||..+ ++.+..|++|...++.+.|..+ + .+.+|+.||+|++||+....+.. .....|. .
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 5688888899999999998 7889999999999999999875 2 78999999999999986544432 3344455 4
Q ss_pred ceEEEEEecCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccccc
Q 046871 128 YVTCLAAAEKNSNIVASGGL----GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTS 203 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 203 (764)
+..|++.. -+.+++++|.. +-.|.+||++.....
T Consensus 119 ~f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----------------------------------------- 156 (376)
T KOG1188|consen 119 PFICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQL----------------------------------------- 156 (376)
T ss_pred cceEeecc-CcCCeEEeccccccCceEEEEEEeccccch-----------------------------------------
Confidence 55666665 56788888753 567999999864221
Q ss_pred CCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc---eeEEeccCCcCeEEEEEcCCC-CEEEEEe
Q 046871 204 QSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGS---KTIKLRGHTDNIRSLLLDSTG-RYCLSGS 278 (764)
Q Consensus 204 ~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~l~sgs 278 (764)
.......|.+.|+++.|+| +.++|++|+.||.|.+||+.... .+...-.|...|.++.|..++ +.|.+-+
T Consensus 157 -----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 157 -----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred -----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE
Confidence 1122567999999999999 67899999999999999987542 222233477789999999877 4688889
Q ss_pred CCCcEEEEeCCCCeeeEEEeeec------------CceEEEEEcCCCCEEEEecC-CCcEEEEeCC---CCe---EEEEe
Q 046871 279 SDSMIRLWDLGQQRCIHSYAVHT------------DSVWALASTPTFSHVYSGGR-DLSLYLTDLA---TRE---SLLLC 339 (764)
Q Consensus 279 ~Dg~I~iwdl~~~~~~~~l~~h~------------~~V~~l~~spd~~~l~sgs~-Dg~I~iwd~~---~~~---~~~~~ 339 (764)
...+..+|+++.+.+...+.... +-+.......+...++.++. -+...++-+. ++. .+..+
T Consensus 232 H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 232 HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 99999999998887655443211 11111111224455555544 4555544332 332 22333
Q ss_pred e--cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 340 T--GEHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 340 ~--~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
+ +..-|.++.|...+ +++|++||.+.+|..+
T Consensus 312 ~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 312 QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3 23456777776555 9999999999999863
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=3.5e-16 Score=160.75 Aligned_cols=265 Identities=15% Similarity=0.193 Sum_probs=192.8
Q ss_pred ccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEe-c------CCCcEEEEEeCCCeEEEE
Q 046871 82 SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAA-E------KNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~-p------~~~~~lasg~~dg~I~iw 154 (764)
.|..-|.|+.|+.+..++.++.|..+.+|.-.. ......+.-..+.+....+. + ...+.|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~-~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVS-RDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeeccc-chhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 466677899998877666666777766665222 22222222222222111111 0 234678888899988887
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
+-.. ........|.+.+.+-.|+|+|.-|++
T Consensus 91 ~k~~-------------------------------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt 121 (737)
T KOG1524|consen 91 NKSA-------------------------------------------------RVERSISAHAAAISSGRWSPDGAGLLT 121 (737)
T ss_pred cccc-------------------------------------------------hhhhhhhhhhhhhhhcccCCCCceeee
Confidence 6442 222346789999999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC
Q 046871 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314 (764)
Q Consensus 235 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~ 314 (764)
.++||.|++|. ++|-...++.....+|+|++|.|+.+.++-+- .+.+.|=.+.....+-.++.|.+-|.++.|++..+
T Consensus 122 ~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~ 199 (737)
T KOG1524|consen 122 AGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN 199 (737)
T ss_pred ecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCcccc
Confidence 99999999998 56766666666778999999999988766653 45677777777777888999999999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccccc
Q 046871 315 HVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRA 394 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~ 394 (764)
.+++|+.|-..++||-..........|+.+|++++|.|+.++....-+++|+ ..
T Consensus 200 lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~------------~~-------------- 253 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF------------SS-------------- 253 (737)
T ss_pred ceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeee------------cC--------------
Confidence 9999999999999998776666667789999999999998444333333331 10
Q ss_pred ccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEE
Q 046871 395 RVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLW 445 (764)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lW 445 (764)
+....|..++||+||..+++|...|.|.+=
T Consensus 254 ---------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 254 ---------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 112346778889999999999888877653
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.6e-16 Score=153.96 Aligned_cols=288 Identities=16% Similarity=0.184 Sum_probs=204.7
Q ss_pred CCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC----CCCccceeec-ccccceeEEEEeCCC-eEEEEeC
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD----DVGSCSATFE-SHVDWVNDAVLVGDN-TLVSCSS 103 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~----~~~~~~~~l~-~h~~~V~~v~~s~d~-~l~s~s~ 103 (764)
...+|.+.|++|.| |.++++|++||.|..+++|+++. ...+.+.... .|...|.|++|...+ .+++|..
T Consensus 51 D~~~H~GCiNAlqF-----S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 51 DVREHTGCINALQF-----SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhccccceeee-----ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 34589999999999 78899999999999999999864 1223344333 356899999998776 8999999
Q ss_pred CCcEEEecCCCCCeeeeecc--ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLR--QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~--~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
+++|...|+.. .+.+..+. ...+.|..+..+ +..+.|++.+.++.|.+||++......
T Consensus 126 ~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~------------------ 185 (609)
T KOG4227|consen 126 WGTVIKHDIET-KQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPI------------------ 185 (609)
T ss_pred cceeEeeeccc-ceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCC------------------
Confidence 99999999844 44444443 223589999999 458899999999999999998632111
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce-eEE---ec
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSK-TIK---LR 256 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~-~~~---l~ 256 (764)
.+..........+.+.|+| ...+|++.+..+-+-+||.+..+. +.. +.
T Consensus 186 ---------------------------~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 186 ---------------------------SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred ---------------------------ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 0111223355678889999 456788888888999999876532 221 11
Q ss_pred cCCc---CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC-------ceEEEEEcCCCCEEEEecCCCcEE
Q 046871 257 GHTD---NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD-------SVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 257 ~h~~---~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~-------~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
+-.. .-.++.|+|.|+.|++--....-.+||+-+.+|..--..|.. .+.+++|..|. .+++|+.+-.|+
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~ 317 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIH 317 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceE
Confidence 2111 235678999999998876666667889877665332222332 36677787554 499999999999
Q ss_pred EEeCCCC------------------------eEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 327 LTDLATR------------------------ESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 327 iwd~~~~------------------------~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
+|.+... ....+..|..-+..+.|+|.. |++.+....+++|...
T Consensus 318 ~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 318 IWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 9987421 111122355667899999988 6666678999999754
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=161.43 Aligned_cols=263 Identities=16% Similarity=0.207 Sum_probs=195.3
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEE----e--CC---CeEEEE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVL----V--GD---NTLVSC 101 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~----s--~d---~~l~s~ 101 (764)
...|...|.|+.| +.....+++++.+-.+.-||+.+...+..... .+-|.-..+ + .. ..|+.+
T Consensus 10 k~r~~e~vc~v~w-----~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~ 81 (737)
T KOG1524|consen 10 KNRNSEKVCCVDW-----SSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLIC 81 (737)
T ss_pred ccccceeEEeecc-----cccceEEEeccCceEEEeecccchhhhhhhCC---cccCCccccccccccCCCCCcceEEEE
Confidence 3468888888888 55566666666555555556655332222111 111111111 1 11 269999
Q ss_pred eCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 102 SSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 102 s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
++||.+.+.+ ..++..+.+..|.+.+.|-.|+ +++.-|+++|.||.|++|.-...
T Consensus 82 s~DGkf~il~--k~~rVE~sv~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrsGM---------------------- 136 (737)
T KOG1524|consen 82 SNDGRFVILN--KSARVERSISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSRSGM---------------------- 136 (737)
T ss_pred cCCceEEEec--ccchhhhhhhhhhhhhhhcccC-CCCceeeeecCCceEEEEeccch----------------------
Confidence 9999999988 5688888999999999999999 88999999999999999986542
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcC
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN 261 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 261 (764)
....+.....+|+|++|.|+.+-++.+ ..+.+.|=.+.-...+.+.+.|.+-
T Consensus 137 ---------------------------LRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGi 188 (737)
T KOG1524|consen 137 ---------------------------LRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGL 188 (737)
T ss_pred ---------------------------HHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcE
Confidence 112234456789999999987766654 3466777777777888899999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec
Q 046871 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG 341 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 341 (764)
|.++.|++..+.+++|+.|-..++||- .|+.+.+-..|.-+|++++|.|+ ..++.++. +++++ ....
T Consensus 189 iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~----------~~p~ 255 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF----------SSPR 255 (737)
T ss_pred EEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee----------cCCC
Confidence 999999999999999999999999997 67888888899999999999999 55665553 34441 1223
Q ss_pred CCCeEEEEeeCCc--eEEEeCCCcEEEe
Q 046871 342 EHPILQLALHDDN--IWVATTDSSVHRW 367 (764)
Q Consensus 342 ~~~V~~l~~spd~--l~~~s~dg~I~iw 367 (764)
.+.|..++|++|| +.+|+..|.+.+=
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccceEEEEEcCCCceeeccccCceEEEe
Confidence 5679999999999 8888888876543
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=2.1e-17 Score=177.73 Aligned_cols=286 Identities=20% Similarity=0.284 Sum_probs=223.7
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
+.++.+.+|...|.|+.|...| ++++++.|..|+||.. .++.++....+|.+.|+.++.+ .+..++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs-~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVS-SNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeec-cchhhhccCCCCccccchhccc-hhhhhhhhcccCceEEE
Confidence 3456678999999999999887 8999999999999995 6789999999999999999999 78889999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
|.+..+ ..+..+.+|.+.|++++|+|-.
T Consensus 259 Wrl~~~------------------------------------------------~pvsvLrghtgavtaiafsP~~---- 286 (1113)
T KOG0644|consen 259 WRLPDG------------------------------------------------APVSVLRGHTGAVTAIAFSPRA---- 286 (1113)
T ss_pred EecCCC------------------------------------------------chHHHHhccccceeeeccCccc----
Confidence 999874 3345588999999999999954
Q ss_pred EEeCCCeEEEEeCCCCceeEE---ec-cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEE
Q 046871 234 SGGTEKVVRVWDPRTGSKTIK---LR-GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS 309 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~---l~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~ 309 (764)
+.+.||++++||.+-.-.+.. ++ ...+-+-++.|...+..++|++.|+.-..|.+..-.+ +...+.-+.+
T Consensus 287 sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ 360 (1113)
T KOG0644|consen 287 SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTR 360 (1113)
T ss_pred cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEec
Confidence 778999999999882211111 01 1234667788888889999999999999887643221 2211112222
Q ss_pred cCC-CCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeecCCcc
Q 046871 310 TPT-FSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 310 spd-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
+.+ ..+.+++-.+-.+++|++.+|....... +.+.+..+.+||-. ...++.||...|||+-.+.+++.+.
T Consensus 361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~----- 435 (1113)
T KOG0644|consen 361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF----- 435 (1113)
T ss_pred cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-----
Confidence 212 2456677778889999999998776554 67889999999988 6678899999999999888776653
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.|+..+...+||+||..++..+.-|.+++.....++..+..
T Consensus 436 -------------------------------~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~a 476 (1113)
T KOG0644|consen 436 -------------------------------IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKA 476 (1113)
T ss_pred -------------------------------cccceeeccccCCCCceEecCCCCCceEEeccCCCcccccc
Confidence 23555677889999999999999999999987776665543
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=3e-15 Score=143.33 Aligned_cols=275 Identities=19% Similarity=0.272 Sum_probs=198.6
Q ss_pred CeeEEEeecccccCCCcEEEEEeC----CCcEEEEeCCCCCCccceee-cccccceeEEEEeCCC-----eEEEEeCCCc
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSR----DGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVGDN-----TLVSCSSDTT 106 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~----Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~d~-----~l~s~s~Dg~ 106 (764)
.+.++.|... ...+.+||.|+. .+.|.|-.+....++.+..- -.|..+++.+.|.|+. .|++.+ +..
T Consensus 46 ~lya~~Ws~~--~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVR--PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-SDF 122 (364)
T ss_pred ceeeeccccC--CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-cCe
Confidence 5788888432 123458888873 46788877765434332221 3689999999999984 233333 346
Q ss_pred EEEecCCCCCee---eeec-----cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 107 LKTWNCSSDGTC---IRTL-----RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 107 V~vWd~~~~~~~---~~~l-----~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
+++|.+..+... ...+ ..+..++++..|+.-+.+++.+++.|-+..|||++++..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------------- 185 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------------- 185 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------------
Confidence 999997532211 1112 245678999999988899999999999999999987410
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe--
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTIKL-- 255 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~l-- 255 (764)
+....++.+|...|+.++|...+ +.+++.+.||.||+||++..+.-..+
T Consensus 186 ----------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 186 ----------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ----------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 22334578999999999999844 57889999999999999976543322
Q ss_pred -ccCCcCeEEEEEcCC-CCEEEEEeCC-CcEEEEeCCC-CeeeEEEeeecCceEEEEEcCC-CCEEEEecCCCcEEEEeC
Q 046871 256 -RGHTDNIRSLLLDST-GRYCLSGSSD-SMIRLWDLGQ-QRCIHSYAVHTDSVWALASTPT-FSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 256 -~~h~~~V~~l~~spd-g~~l~sgs~D-g~I~iwdl~~-~~~~~~l~~h~~~V~~l~~spd-~~~l~sgs~Dg~I~iwd~ 330 (764)
.....+...++|++. -+++++-..| ..|.|.|++. ..++.++++|.+.|+.++|.|. ..+|+|++.|..+.+||+
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 222457888999884 4667766555 4699999986 4578899999999999999984 578999999999999999
Q ss_pred CCCe------EEEEeecCCCeEEEEeeCCc---eEEEe
Q 046871 331 ATRE------SLLLCTGEHPILQLALHDDN---IWVAT 359 (764)
Q Consensus 331 ~~~~------~~~~~~~~~~V~~l~~spd~---l~~~s 359 (764)
...- ++..+..++.|..+.|++.. ++++.
T Consensus 318 ~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 318 QQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 7532 33444567789999998654 55444
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.2e-14 Score=155.40 Aligned_cols=268 Identities=11% Similarity=0.159 Sum_probs=175.9
Q ss_pred EEEEE-eCCCcEEEEeCCC-CCCccceeecccccceeEEEEeCCC-eEEEE-eCCCcEEEecCCCCCee--eeeccccCC
Q 046871 54 YLFTG-SRDGTLKRWSLAD-DVGSCSATFESHVDWVNDAVLVGDN-TLVSC-SSDTTLKTWNCSSDGTC--IRTLRQHSD 127 (764)
Q Consensus 54 ~L~sg-s~Dg~I~iWd~~~-~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~-s~Dg~V~vWd~~~~~~~--~~~l~~h~~ 127 (764)
+++++ ..++.|.+||+.+ +....+..+. +.+....++++|++ +|+++ ..++.|.+|++...+.. ..... ..+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 34444 6789999999964 2334455554 34567789999997 55444 45889999998533332 22222 233
Q ss_pred ceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCC
Q 046871 128 YVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQ 206 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 206 (764)
....++|+ ++++++++++ .++.|.+|++++......
T Consensus 81 ~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~------------------------------------------ 117 (330)
T PRK11028 81 SPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVA------------------------------------------ 117 (330)
T ss_pred CceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCC------------------------------------------
Confidence 56789999 6777777665 488999999964211100
Q ss_pred CccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeE-------EeccCCcCeEEEEEcCCCCEEEEEe
Q 046871 207 GYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPRTGSKTI-------KLRGHTDNIRSLLLDSTGRYCLSGS 278 (764)
Q Consensus 207 ~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~~~~~~-------~l~~h~~~V~~l~~spdg~~l~sgs 278 (764)
..... .+.....+++++|++++++++ ..++.|.+||+.+...+. ... .....+.+.|+|+|++++++.
T Consensus 118 --~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 118 --PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred --ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEe
Confidence 00001 112335678899999988654 456999999997633221 111 123467899999999998887
Q ss_pred C-CCcEEEEeCCC--C--eeeEEEeeec------CceEEEEEcCCCCEEEEecC-CCcEEEEeCCCCe-EE---EEeecC
Q 046871 279 S-DSMIRLWDLGQ--Q--RCIHSYAVHT------DSVWALASTPTFSHVYSGGR-DLSLYLTDLATRE-SL---LLCTGE 342 (764)
Q Consensus 279 ~-Dg~I~iwdl~~--~--~~~~~l~~h~------~~V~~l~~spd~~~l~sgs~-Dg~I~iwd~~~~~-~~---~~~~~~ 342 (764)
. +++|.+|++.. + +.++++..+. .....+.++|++++++++.. ++.|.+|++.... .+ ......
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~ 273 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE 273 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc
Confidence 6 89999999973 2 3344443221 12336889999999998864 7899999986432 22 222223
Q ss_pred CCeEEEEeeCCc--eEEEeC-CCcEEEeeCC
Q 046871 343 HPILQLALHDDN--IWVATT-DSSVHRWPAE 370 (764)
Q Consensus 343 ~~V~~l~~spd~--l~~~s~-dg~I~iwd~~ 370 (764)
.....+.++|++ ++++.. +++|.+|+++
T Consensus 274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 345688999999 776665 8899999875
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.4e-16 Score=151.80 Aligned_cols=312 Identities=15% Similarity=0.167 Sum_probs=219.5
Q ss_pred CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC-----CCeeeeecc-ccCCceEEEEEecCCCcEEEEEe
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS-----DGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGG 146 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~-----~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~ 146 (764)
.-+.+.+.+|.+.|+++.|+.++ .|++|+.|..+++|++.. ..+++.... .|...|.|++|. .....+++|+
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-~~N~~~~SG~ 124 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-LENRFLYSGE 124 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-cCCeeEecCC
Confidence 34566678999999999999887 899999999999999732 123333333 456899999999 7888999999
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc
Q 046871 147 LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226 (764)
Q Consensus 147 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s 226 (764)
.+++|.+.|+++..... +.......+.||.+..+
T Consensus 125 ~~~~VI~HDiEt~qsi~----------------------------------------------V~~~~~~~~~VY~m~~~ 158 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY----------------------------------------------VANENNNRGDVYHMDQH 158 (609)
T ss_pred CcceeEeeecccceeee----------------------------------------------eecccCcccceeecccC
Confidence 99999999998742211 11122345689999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCce-e--EEeccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe-eeEEEeee-
Q 046871 227 DSGNLLVSGGTEKVVRVWDPRTGSK-T--IKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQR-CIHSYAVH- 300 (764)
Q Consensus 227 p~g~~l~sgs~dg~I~iwd~~~~~~-~--~~l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h- 300 (764)
|-.+.|++.+.++.|.+||.+.... + ..+........++.|+|.. .+|++.+..+-+-+||++... .+....+.
T Consensus 159 P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 159 PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 9889999999999999999987652 2 2223344567888899954 567888889999999997643 22222111
Q ss_pred -----cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE-EeecC-------CCeEEEEeeCCc-eEEEeCCCcEEE
Q 046871 301 -----TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL-LCTGE-------HPILQLALHDDN-IWVATTDSSVHR 366 (764)
Q Consensus 301 -----~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~-------~~V~~l~~spd~-l~~~s~dg~I~i 366 (764)
...-.++.|+|+|..|++--+...-.+||+-+..+.. .+.|. ..+.+++|..|. +++|+.+=.|++
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHI 318 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEE
Confidence 1123567899999999988887777889988755433 33332 246788999998 999999999999
Q ss_pred eeCCCCCCceeee--cCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC-ceEeEEecCCcEEEEeeCCCcEE
Q 046871 367 WPAEGRNPQKVFQ--RGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG-IVQHEILNNRRHVLTKDAAGSVK 443 (764)
Q Consensus 367 wd~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~-i~~~~~s~dg~~l~t~s~dG~V~ 443 (764)
|.+.......-+. ++..... | ..+ ........+.|+.. +.++.|++....|++.+-...++
T Consensus 319 WklP~~~ds~G~~~IG~~~~~~------~------~~~----~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~K 382 (609)
T KOG4227|consen 319 WKLPRANDSYGFTQIGHDEEEM------P------SEI----FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFK 382 (609)
T ss_pred EecCCCccccCccccCcchhhC------c------hhh----eecceeEEEecccccccceeecCCcceEeccchhhhee
Confidence 9886432221111 0000000 0 000 11223345566665 56889999999999999999999
Q ss_pred EEEcc
Q 046871 444 LWEIT 448 (764)
Q Consensus 444 lWdi~ 448 (764)
+|.--
T Consensus 383 lWS~~ 387 (609)
T KOG4227|consen 383 LWSDH 387 (609)
T ss_pred ccccc
Confidence 99643
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.1e-16 Score=149.35 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=194.3
Q ss_pred cceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 76 CSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
....+++|.+.|+++.|-.+++|+++..-|.|++|++. +......+. .|...|+.+... ++ ..+.+-+.|..+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lq-t~r~~~~~r~~g~~~it~lq~~-p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQ-TERDLPLIRLFGRLFITNLQSI-PN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEee-cCccchhhhhhccceeeceeec-CC-cchhhcCCCceEEEE
Confidence 46677899999999999988899999999999999984 455555666 677889999888 43 778899999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
++.......... +.. +.-+.....+........-+.+.|+..
T Consensus 83 ~ia~s~~i~i~S-----------------i~~-----------------nslgFCrfSl~~~~k~~eqll~yp~rg---- 124 (323)
T KOG0322|consen 83 TIAYSAFISIHS-----------------IVV-----------------NSLGFCRFSLVKKPKNSEQLLEYPSRG---- 124 (323)
T ss_pred EccCcceEEEee-----------------eec-----------------cccccccceeccCCCcchhheecCCcc----
Confidence 997531111000 000 000001111111111111122222110
Q ss_pred EeCCCeEEEEeCCCCceeEEe----ccCCcCeEEEEEcC-CCC--EEEEEeCCCcEEEEeCCCCee----------eEEE
Q 046871 235 GGTEKVVRVWDPRTGSKTIKL----RGHTDNIRSLLLDS-TGR--YCLSGSSDSMIRLWDLGQQRC----------IHSY 297 (764)
Q Consensus 235 gs~dg~I~iwd~~~~~~~~~l----~~h~~~V~~l~~sp-dg~--~l~sgs~Dg~I~iwdl~~~~~----------~~~l 297 (764)
+ | .+.+-|......+... .+..+.+.+..+.- +++ ++++|-.+|.+.+||+.++.. ....
T Consensus 125 -s-d-e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ 201 (323)
T KOG0322|consen 125 -S-D-ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN 201 (323)
T ss_pred -c-c-hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccch
Confidence 0 0 0122222111111111 12345566665433 343 366888899999999988733 3334
Q ss_pred eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC--eEEE--Ee-ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 298 AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR--ESLL--LC-TGEHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 298 ~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~--~~~~--~~-~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
..|..+|.++.+.+....=++|+.+..+.+|++... .... .. -.+-.|..+.+-||+ +++++.|+.||||+..
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 568999999999887777788888889999998643 2221 11 124568899999999 8999999999999999
Q ss_pred CCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEc
Q 046871 371 GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi 447 (764)
+.++..++..|. .++.+++|+||...+|.++.|++|.+|++
T Consensus 282 tl~pLAVLkyHs------------------------------------agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHS------------------------------------AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhh------------------------------------cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999988877543 34667888889999999999999999986
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.6e-15 Score=145.08 Aligned_cols=248 Identities=22% Similarity=0.301 Sum_probs=182.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCC-------CcEEEEeCCCCC-------Cccceeec-ccccceeEEEEeCCC
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRD-------GTLKRWSLADDV-------GSCSATFE-SHVDWVNDAVLVGDN 96 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~D-------g~I~iWd~~~~~-------~~~~~~l~-~h~~~V~~v~~s~d~ 96 (764)
.-|-+.|..|+-.| .+..+|+|+..+ -.+-||.+.... .+++..+. .+-+.|.|+.|.|++
T Consensus 60 ~h~agEvw~las~P----~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 60 FHHAGEVWDLASSP----FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hcCCcceehhhcCC----CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 34677898888743 244566666432 236799986532 23344444 456689999999997
Q ss_pred -eEEEEeCCCcEEEecCCCCCeeeeec-----cccCCceEEEEEec-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC
Q 046871 97 -TLVSCSSDTTLKTWNCSSDGTCIRTL-----RQHSDYVTCLAAAE-KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 169 (764)
Q Consensus 97 -~l~s~s~Dg~V~vWd~~~~~~~~~~l-----~~h~~~V~~l~~~p-~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~ 169 (764)
.+++-. |..|.+|++....+....+ ..|....++-+|+| .+++.+++.+ |+++..||+++....
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~------- 206 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN------- 206 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh-------
Confidence 565554 8899999986544423222 23566678888997 5778887765 788999999974221
Q ss_pred cCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 046871 170 EDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRT 248 (764)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~ 248 (764)
..+..+|...|..+.|+|+.+ +|++|+.||.|+|||.+.
T Consensus 207 ----------------------------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 207 ----------------------------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred ----------------------------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 123567888899999999765 588999999999999986
Q ss_pred C-ceeEEeccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-----------------------------eeeEEE
Q 046871 249 G-SKTIKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQ-----------------------------RCIHSY 297 (764)
Q Consensus 249 ~-~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~-----------------------------~~~~~l 297 (764)
- .++..+.+|...|.++.|+|.. .+|++|+.|..|.+|....- ..+.++
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 5 5688899999999999999954 56889999999999965210 124577
Q ss_pred eeecCceEEEEEcCCCCE-EEEecCCCcEEEEeCCC
Q 046871 298 AVHTDSVWALASTPTFSH-VYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 298 ~~h~~~V~~l~~spd~~~-l~sgs~Dg~I~iwd~~~ 332 (764)
..|.+.|++++|+.-..+ |++-+.||.+.|=.+..
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 889999999999765554 66889999998876643
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.6e-14 Score=141.68 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=170.4
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCC
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG--AEVFIWDIEAAL 160 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d--g~I~iwdl~~~~ 160 (764)
...++.+.|..+. .|..|+.|| .++++...-+++... ......|..+-|+ ..++|..+.+ +.+++.+.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCc
Confidence 3456677788887 455666666 588887444442222 2233456667777 5566655544 347777776421
Q ss_pred CCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 046871 161 APSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKV 240 (764)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~ 240 (764)
. +. ......+|.++.++. +.|+++-.+.
T Consensus 80 ~------------------------------------------------IC-e~~fpt~IL~VrmNr--~RLvV~Lee~- 107 (391)
T KOG2110|consen 80 T------------------------------------------------IC-EIFFPTSILAVRMNR--KRLVVCLEES- 107 (391)
T ss_pred e------------------------------------------------EE-EEecCCceEEEEEcc--ceEEEEEccc-
Confidence 0 00 112356788999884 4566665544
Q ss_pred EEEEeCCCCceeEEecc---CCcCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCE
Q 046871 241 VRVWDPRTGSKTIKLRG---HTDNIRSLLLDSTGRYCLSG--SSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSH 315 (764)
Q Consensus 241 I~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~sg--s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~ 315 (764)
|+|||+++.+.+.++.. +...+.++.+++.+.+++.- ...|.|.+||+.+-+.+.++..|.+.+.+++|+++|.+
T Consensus 108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~l 187 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTL 187 (391)
T ss_pred EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCE
Confidence 99999999999887753 44456667777777788743 34689999999999999999999999999999999999
Q ss_pred EEEecCCCc-EEEEeCCCCeEEEEeec---CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 316 VYSGGRDLS-LYLTDLATRESLLLCTG---EHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 316 l~sgs~Dg~-I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
|||++..|+ |||+.+.+|+.+..+.. ...|.+++|++++ |.+.+..++|++|.++...
T Consensus 188 lATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 188 LATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999986 69999999999988874 3468999999999 6666678999999997654
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=2.7e-15 Score=164.19 Aligned_cols=254 Identities=17% Similarity=0.186 Sum_probs=188.4
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccce----eecccccceeEEEEeCC--C-eEEEEeCCCcE
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSA----TFESHVDWVNDAVLVGD--N-TLVSCSSDTTL 107 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~----~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V 107 (764)
...|.|+.|.+ -+..+|+.|..+|.|.+||+......... ....|..+|+.+.|..+ + .++++|.||.|
T Consensus 242 ~s~v~~~~f~p----~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 242 PSEVTCLKFCP----FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred CCceeEEEecc----CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 56899999965 35678999999999999999875432222 22468899999999865 2 59999999999
Q ss_pred EEecCCCCCeeee-----ecc------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 108 KTWNCSSDGTCIR-----TLR------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 108 ~vWd~~~~~~~~~-----~l~------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
+.|++..-..+.. ... .-...+++++|.+.+.+.++.|+.+|.|..-+-........
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------ 385 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------ 385 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------------
Confidence 9998633211111 111 12246889999988899999999999887744332111000
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEe
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR-TGSKTIKL 255 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~-~~~~~~~l 255 (764)
...........|.++|+++.++|-+..++..+.|.+|+||... ...++..+
T Consensus 386 ----------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~ 437 (555)
T KOG1587|consen 386 ----------------------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL 437 (555)
T ss_pred ----------------------------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh
Confidence 0011122356789999999999966655544459999999988 66788888
Q ss_pred ccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 256 RGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQ--QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~--~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
..+.+.|++++|||-.. .|+++..||.|.+||+.. ..++.+...+....+.+.|++.|+.|++|+..|.+.+|++..
T Consensus 438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 88889999999999654 577888899999999964 345555555666677888899999999999999999999864
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=4.6e-15 Score=162.40 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=194.3
Q ss_pred CCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCee-ee----eccccCCceEEEE
Q 046871 61 DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTC-IR----TLRQHSDYVTCLA 133 (764)
Q Consensus 61 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~-~~----~l~~h~~~V~~l~ 133 (764)
++.+.+|++... ......+. -...|.|+.|+|.. .++.|..+|.|.+||+...+.. .. ....|..++..+.
T Consensus 221 ~~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 357999999875 34444444 36789999999874 8899999999999998654432 11 2346889999999
Q ss_pred EecCCC--cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 134 AAEKNS--NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 134 ~~p~~~--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
|. .+. .-|++++.||.|..|+++.-..+........ .....
T Consensus 299 W~-~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~------------------------------------~~~~~ 341 (555)
T KOG1587|consen 299 WL-QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES------------------------------------KKHKG 341 (555)
T ss_pred Ee-ccCCCCceEEEecCCcEeeeeccccccchhhccccc------------------------------------ccccc
Confidence 97 332 4588999999999998875433221100000 00000
Q ss_pred eccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---c-----eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCc
Q 046871 212 AAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG---S-----KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSM 282 (764)
Q Consensus 212 ~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~---~-----~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~ 282 (764)
........+++++|.+ +...++.|+.+|.|.--+-... . ....+..|.++|+++.++|=+..++..+.|-+
T Consensus 342 ~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~ 421 (555)
T KOG1587|consen 342 QQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT 421 (555)
T ss_pred cccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce
Confidence 0112234578899987 6678999999999887433222 1 13355678899999999998776665555999
Q ss_pred EEEEeCC-CCeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCe--EEEEee-cCCCeEEEEeeCCc--e
Q 046871 283 IRLWDLG-QQRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRE--SLLLCT-GEHPILQLALHDDN--I 355 (764)
Q Consensus 283 I~iwdl~-~~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~--~~~~~~-~~~~V~~l~~spd~--l 355 (764)
++||... ...++..+..+...|++++|||.. ..|+++..||.|.+||+.... ++.... .....+.+.|++.+ +
T Consensus 422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL 501 (555)
T ss_pred eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence 9999988 777888888888889999999976 456788889999999986433 333332 24456677888878 8
Q ss_pred EEEeCCCcEEEeeCCC
Q 046871 356 WVATTDSSVHRWPAEG 371 (764)
Q Consensus 356 ~~~s~dg~I~iwd~~~ 371 (764)
++|...|++++|++..
T Consensus 502 avGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSE 517 (555)
T ss_pred EEecCCCcEEEEEcCc
Confidence 8889999999999964
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=7.9e-14 Score=138.31 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=173.2
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCC--CcEEEecC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSD--TTLKTWNC 112 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~D--g~V~vWd~ 112 (764)
...|+.+.| ..+...|..|+.|| -++++.+.- ............|..+.|+.. .++..+.+ +.+++.++
T Consensus 5 ~~ti~~~~~-----Nqd~~~lsvGs~~G-yk~~~~~~~--~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 5 KPTINFIGF-----NQDSTLLSVGSKDG-YKIFSCSPF--EKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred Ccceeeeee-----ccceeEEEccCCCc-eeEEecCch--HHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEc
Confidence 345677777 67888888888886 578877652 111111222334556666653 44444444 34888886
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
. ....+..+. ....|.++.+. .+.|+++-.+. |+|||+++.+.....
T Consensus 76 K-k~~~ICe~~-fpt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI--------------------------- 122 (391)
T KOG2110|consen 76 K-KKTTICEIF-FPTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTI--------------------------- 122 (391)
T ss_pred c-cCceEEEEe-cCCceEEEEEc---cceEEEEEccc-EEEEecccceeehhh---------------------------
Confidence 3 333333332 34678888887 55666665544 999999985433211
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG--GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg--s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
.....+...+.+++++..+.+++.- ...|.|.+||..+-+.+..+..|.+++-+++|+++
T Consensus 123 ------------------~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 123 ------------------ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred ------------------hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC
Confidence 1122355567777887777888853 34689999999999999999999999999999999
Q ss_pred CCEEEEEeCCCc-EEEEeCCCCeeeEEEeeec--CceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 271 GRYCLSGSSDSM-IRLWDLGQQRCIHSYAVHT--DSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 271 g~~l~sgs~Dg~-I~iwdl~~~~~~~~l~~h~--~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
|.+|||+|..|+ |||+.+.+|+.+..|+... ..|.+++|+|++++|++.|..++|.++.++.
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999998 8999999999999998543 3589999999999999999999999998854
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.1e-14 Score=141.64 Aligned_cols=339 Identities=15% Similarity=0.139 Sum_probs=215.6
Q ss_pred ccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeeecc
Q 046871 46 SSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRTLR 123 (764)
Q Consensus 46 ~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~l~ 123 (764)
++|||+|+++|+.++- .+.|-|.++ .+..+-|. .-+.|.-+.|..|. .|.....|+.|.+|++.. .+-...+.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET--LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID 88 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch--hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec
Confidence 3469999999999876 788888887 33333222 25567788998886 566778899999999844 44455677
Q ss_pred ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccccc
Q 046871 124 QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTS 203 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 203 (764)
...+.+..+.|+|...++|.+...+-.|.+|.+.+............. ....+..++....+..-. ..........
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~-kg~~f~~dg~f~ai~sRr---DCkdyv~i~~ 164 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV-KGYAFHPDGQFCAILSRR---DCKDYVQISS 164 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCc-eeEEECCCCceeeeeecc---cHHHHHHHHh
Confidence 778889999999554578888889999999999875433211111000 001111111111110000 0000000000
Q ss_pred CCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcE
Q 046871 204 QSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMI 283 (764)
Q Consensus 204 ~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I 283 (764)
-........+....-..+.+.|+|||+.|+ +||.--.-.+..+. -.-.+..+.|+|.+++|+.|+.|+.+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhh
Confidence 001111222333455677888999987665 45532222222222 22468899999999999999999999
Q ss_pred EEEeCCCCee------------------------------------------------------------eEEEee----
Q 046871 284 RLWDLGQQRC------------------------------------------------------------IHSYAV---- 299 (764)
Q Consensus 284 ~iwdl~~~~~------------------------------------------------------------~~~l~~---- 299 (764)
|+.+--+.+. ++.++.
T Consensus 235 rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~ 314 (447)
T KOG4497|consen 235 RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDF 314 (447)
T ss_pred hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCC
Confidence 9854221111 001110
Q ss_pred --ecCceEEEEEcCCCCEEEEecC--CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 300 --HTDSVWALASTPTFSHVYSGGR--DLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 300 --h~~~V~~l~~spd~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
..-.+--++|++|..+++|-.. -+.+.+||++..+....+...++|....|+|.. +++++....+++|......
T Consensus 315 pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 315 PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 1123667899999998887654 367999999998888788888999999999998 8888888899999765422
Q ss_pred CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCC
Q 046871 374 PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAG 440 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG 440 (764)
.+.. ..+| ..|.++.|.-+|..++-.+.|.
T Consensus 395 ~V~v------------------------------------P~~G-F~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 395 VVGV------------------------------------PKKG-FNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEec------------------------------------CCCC-ceeeeEEecCCCcEEEEEcCCc
Confidence 1111 1123 6688889999999999888885
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=1.3e-14 Score=141.06 Aligned_cols=226 Identities=17% Similarity=0.174 Sum_probs=180.5
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC-CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV-GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~-~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~ 112 (764)
..+|+|.|| ++|+..+|.+-....|.||...... .+...++..|...|+.|.|+|.. +|++|+.|..-+||..
T Consensus 10 ~~pitchAw-----n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAW-----NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeee-----cCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 358999999 7999999999999999999987765 77899999999999999999985 9999999999999997
Q ss_pred CCCC--eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 113 SSDG--TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 113 ~~~~--~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
..++ +..-.+..+...++++.|+ +..+.||+|+..+.|.+|-.+....
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENd----------------------------- 134 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQEND----------------------------- 134 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccc-----------------------------
Confidence 4444 3444566789999999999 7899999999999999998875310
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC------------------CCcee
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR------------------TGSKT 252 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~------------------~~~~~ 252 (764)
| .....+.+.+.+.|.++.|+|++-+|++|+.|+..|++..- -|+.+
T Consensus 135 ----------W-----WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 135 ----------W-----WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred ----------e-----ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 0 01112345567889999999999999999999999998641 12344
Q ss_pred EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eeEEEeeecCceEEEEEc
Q 046871 253 IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-CIHSYAVHTDSVWALAST 310 (764)
Q Consensus 253 ~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h~~~V~~l~~s 310 (764)
.++....+.+..+.|+|+|..|+-.+.|.++.+-|..... .+.+.....-+..++.|-
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~i 258 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWI 258 (361)
T ss_pred HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEee
Confidence 4554567889999999999999999999999999986554 344444333566666664
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1e-14 Score=141.81 Aligned_cols=243 Identities=13% Similarity=0.147 Sum_probs=186.4
Q ss_pred ecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC--CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 046871 80 FESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD--GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 80 l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~--~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl 156 (764)
+.--..+|+|.+|++|+ .++.+-....|.||..... .+..+++..|...|+++.|. +..+.|++|+.|+.-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCcccccc
Confidence 33345789999999997 7888888889999986443 25678999999999999999 78899999999999999988
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG 236 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs 236 (764)
..+. .......+..++..++++.|+|.++.|++|+
T Consensus 85 ~~~~---------------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVgS 119 (361)
T KOG1523|consen 85 PSGG---------------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFAVGS 119 (361)
T ss_pred CCCC---------------------------------------------eeccceeEEEeccceeeEeecCcCceEEecc
Confidence 4321 0122334566788999999999999999999
Q ss_pred CCCeEEEEeCCCCcee----EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-----C-------------Ceee
Q 046871 237 TEKVVRVWDPRTGSKT----IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG-----Q-------------QRCI 294 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~----~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~-----~-------------~~~~ 294 (764)
....|.||-.+...-- ..-+.+.+.|.++.|+|++-+|++|+.|+.+|+|..- . |+.+
T Consensus 120 gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 120 GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 9999999987643221 1223467889999999999999999999999999641 1 2334
Q ss_pred EEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-EEE-EeecCCCeEEEEeeCCc-eEEEeCCCcEEEee
Q 046871 295 HSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLL-LCTGEHPILQLALHDDN-IWVATTDSSVHRWP 368 (764)
Q Consensus 295 ~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-~~~-~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd 368 (764)
..+....+.|..+.|+|+|..|+-.+.|..+.+-|..... .+. .....-|..++.|-.+. ++.++.|..=.++.
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 4454556789999999999999999999999999987664 222 22234677788776665 77777774433333
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1e-13 Score=148.14 Aligned_cols=246 Identities=10% Similarity=0.109 Sum_probs=159.1
Q ss_pred CCeeEEEeecccccCCCcEEEEEe-CCCcEEEEeCCC-CCCccceeecccccceeEEEEeCCC-eEEEEe-CCCcEEEec
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGS-RDGTLKRWSLAD-DVGSCSATFESHVDWVNDAVLVGDN-TLVSCS-SDTTLKTWN 111 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs-~Dg~I~iWd~~~-~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s-~Dg~V~vWd 111 (764)
+....+++ +|++++|++++ .++.|.+|+++. +......... .......++|+|++ .+++++ .++.|.+|+
T Consensus 35 ~~~~~l~~-----spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 35 GQVQPMVI-----SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSP 108 (330)
T ss_pred CCCccEEE-----CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence 45667777 89999998765 578999999973 2222222222 23356789999997 555554 488999999
Q ss_pred CCCCCee---eeeccccCCceEEEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 112 CSSDGTC---IRTLRQHSDYVTCLAAAEKNSNIV-ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 112 ~~~~~~~---~~~l~~h~~~V~~l~~~p~~~~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
+..++.. ...+. +.....+++++ ++++++ ++...++.|.+||+.+........
T Consensus 109 ~~~~g~~~~~~~~~~-~~~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~--------------------- 165 (330)
T PRK11028 109 LDKDGIPVAPIQIIE-GLEGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE--------------------- 165 (330)
T ss_pred ECCCCCCCCceeecc-CCCcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCcccccC---------------------
Confidence 8544322 22222 22346778899 566666 455567999999997521110000
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC--Cc--eeEEeccC----
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-EKVVRVWDPRT--GS--KTIKLRGH---- 258 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~~--~~--~~~~l~~h---- 258 (764)
. ..... ........++|+|+|++++++.. ++.|.+||+.. ++ .+..+..+
T Consensus 166 -------------------~-~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 166 -------------------P-AEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred -------------------C-Cceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 0 00000 01233567899999999988876 89999999973 32 23333221
Q ss_pred --CcCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeeEEEeeec---CceEEEEEcCCCCEEEEecC-CCcEEEEeCC
Q 046871 259 --TDNIRSLLLDSTGRYCLSGSS-DSMIRLWDLGQQRCIHSYAVHT---DSVWALASTPTFSHVYSGGR-DLSLYLTDLA 331 (764)
Q Consensus 259 --~~~V~~l~~spdg~~l~sgs~-Dg~I~iwdl~~~~~~~~l~~h~---~~V~~l~~spd~~~l~sgs~-Dg~I~iwd~~ 331 (764)
......+.++|++++++++.. ++.|.+|++.......++..+. ...+.+.++|+|++|+++.. +++|.+|++.
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 112346889999999998854 7899999986533222222221 24568899999999997765 8999999875
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=6.6e-15 Score=141.07 Aligned_cols=240 Identities=18% Similarity=0.202 Sum_probs=173.1
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC--Cccceee-----cccccceeEEEEeCC--CeEEEEeC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV--GSCSATF-----ESHVDWVNDAVLVGD--NTLVSCSS 103 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~--~~~~~~l-----~~h~~~V~~v~~s~d--~~l~s~s~ 103 (764)
-|.-+++.+.|.|.+-...-++|||++. .+|+|.+...+ .++...+ ..+..++++..|+.- +++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4778899999976432112257777653 89999987422 2222222 245678999999854 48899999
Q ss_pred CCcEEEecCCCC--CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 104 DTTLKTWNCSSD--GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 104 Dg~V~vWd~~~~--~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
|.+..|||+... +.....+-.|...|..++|.....++||+.|.||.++++|++...-..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST------------------ 233 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST------------------ 233 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce------------------
Confidence 999999999653 334567778999999999996567899999999999999998632110
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCC-CeEEEEeCCCC-ceeEEeccC
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTE-KVVRVWDPRTG-SKTIKLRGH 258 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~d-g~I~iwd~~~~-~~~~~l~~h 258 (764)
.++ .-.....+...++|++ |.+++|+-..| ..|.|.|++.. ..+..+++|
T Consensus 234 -----------------IIY----------E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 234 -----------------IIY----------EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred -----------------EEe----------cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 000 0111145677888887 56777765444 57999999865 678899999
Q ss_pred CcCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe------eeEEEeeecCceEEEEEcC-CCCEEEEec
Q 046871 259 TDNIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQR------CIHSYAVHTDSVWALASTP-TFSHVYSGG 320 (764)
Q Consensus 259 ~~~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~------~~~~l~~h~~~V~~l~~sp-d~~~l~sgs 320 (764)
.+.|+.|+|.|. ...|++|+.|..+.+||+.+.- ++..+. -.+.|+.+.|++ ...+|+.+.
T Consensus 287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 999999999995 4679999999999999996532 222333 456799999985 455666554
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.5e-14 Score=144.40 Aligned_cols=277 Identities=19% Similarity=0.219 Sum_probs=200.4
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccc----eeecccccceeEEEEeCCCeEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCS----ATFESHVDWVNDAVLVGDNTLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~----~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~ 108 (764)
.-...|++++|.. .+....|...+.|-.+....+........ .+.......|-.+... |+.|++|-.+|.+.
T Consensus 53 ~~~~ris~l~~~~---d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 53 DELDRISSLLFGV---DGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQ 128 (412)
T ss_pred chhhhhhhheeec---CCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEecCCcEE
Confidence 3456678888842 34455666665666777776665221111 1233445566665554 46899999999999
Q ss_pred EecCCCC---CeeeeeccccCCceEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 109 TWNCSSD---GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG--AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 109 vWd~~~~---~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
+|..... ...+..+..+ ..+..+.-++....++++||.. ..+.+||+++............+
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD------------ 195 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND------------ 195 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc------------
Confidence 9996422 1223333333 3456666666677888999999 88999999875222111000000
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCc
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--GNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTD 260 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~ 260 (764)
..- ..-.-.++++.|-+. ...|++++.-+.||+||++.+ +++..+.-...
T Consensus 196 -----------------------~L~----LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 196 -----------------------RLG----LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred -----------------------ccc----ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 000 011334677888876 788999999999999999876 56777877788
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE-EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS-YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC 339 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~-l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 339 (764)
+++++...|+++++++|...|.+..||++.++.+.. +.+-.+.|.+|..+|.+++++++|-|..|||+|+++.+++..+
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 999999999999999999999999999999998776 8899999999999999999999999999999999998777766
Q ss_pred ecCCCeEEEEeeCC
Q 046871 340 TGEHPILQLALHDD 353 (764)
Q Consensus 340 ~~~~~V~~l~~spd 353 (764)
.....++++.+.++
T Consensus 329 YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 329 YVKSRLTFILLRDD 342 (412)
T ss_pred hhhccccEEEecCC
Confidence 66777778777654
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.3e-14 Score=158.29 Aligned_cols=296 Identities=14% Similarity=0.226 Sum_probs=200.5
Q ss_pred eeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccC---CceEEEEEec-CCCcEEEEEeCCCeEEEEeCCCCC-
Q 046871 87 VNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHS---DYVTCLAAAE-KNSNIVASGGLGAEVFIWDIEAAL- 160 (764)
Q Consensus 87 V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~---~~V~~l~~~p-~~~~~lasg~~dg~I~iwdl~~~~- 160 (764)
-..+.|+|-. .++++...-.|+|||. ..++++..+..+. ..|+.+.+.. .|..++++|+.||.|+||+--...
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3446666654 6777777788999998 4566666665443 5688888852 456789999999999999854321
Q ss_pred CCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 046871 161 APSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKV 240 (764)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~ 240 (764)
...+ -+..|.... ....+..+.-.-+.|.....+|+++|.-..
T Consensus 1146 ~~~e--------------------------------LVTaw~~Ls-----~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1146 KKPE--------------------------------LVTAWSSLS-----DQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCce--------------------------------eEEeecccc-----ccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 0000 000111100 001111222245667776666777767889
Q ss_pred EEEEeCCCCceeEEecc-CCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe---eeEEEeeecCc--eEEEEEcCCC
Q 046871 241 VRVWDPRTGSKTIKLRG-HTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQR---CIHSYAVHTDS--VWALASTPTF 313 (764)
Q Consensus 241 I~iwd~~~~~~~~~l~~-h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~---~~~~l~~h~~~--V~~l~~spd~ 313 (764)
|+|||....+++..+.. ....|+++.-+- .|+.+++|..||.|++||.+... .+..++.|+.. |..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999988777776653 334667766543 46899999999999999987643 46778889887 9999998866
Q ss_pred C-EEEEecCCCcEEEEeCCCCeEEEEe---ec---CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcc
Q 046871 314 S-HVYSGGRDLSLYLTDLATRESLLLC---TG---EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 314 ~-~l~sgs~Dg~I~iwd~~~~~~~~~~---~~---~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
- .|++|+.||.|++||++.......+ .+ ++..+++..|+.. +++|+. +.|.||++...+.. .+.....+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~-~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN-IIKYNPGF 1346 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc-ccccCccc
Confidence 4 4999999999999999974322211 11 2349999999998 555555 99999999765432 22211111
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccE
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGV 451 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~ 451 (764)
.-.....+.+++|.|-.-+|+.|+.|..|.||...+++
T Consensus 1347 -----------------------------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 -----------------------------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -----------------------------ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 00112235889999999999999999999999877654
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=2e-15 Score=157.82 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=172.3
Q ss_pred EEeCCCcEEEecCCCCCeeeeec-c--ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 100 SCSSDTTLKTWNCSSDGTCIRTL-R--QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 100 s~s~Dg~V~vWd~~~~~~~~~~l-~--~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
.++..|.|-|+++...++..... . .....|+.+.|.|-|.+.||+++.||.|++|.+..+......
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~----------- 666 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE----------- 666 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-----------
Confidence 35667999999997766643321 1 134579999999999999999999999999999865322111
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
......+..|...|+++.|+| -.+.|++++.|-+|++||+++++....+
T Consensus 667 ------------------------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l 716 (1012)
T KOG1445|consen 667 ------------------------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL 716 (1012)
T ss_pred ------------------------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee
Confidence 112234788999999999999 5678999999999999999999999999
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eeEEEeeec-CceEEEEEcCCCCEEEEecCC----CcEEEEe
Q 046871 256 RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-CIHSYAVHT-DSVWALASTPTFSHVYSGGRD----LSLYLTD 329 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h~-~~V~~l~~spd~~~l~sgs~D----g~I~iwd 329 (764)
.+|++.|..++|||||+.+++.+.||+|++|+.++++ .++.-.+.. ..--.|.|.-+|+++++.+.| ..|.+||
T Consensus 717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 9999999999999999999999999999999987754 333322211 223467787899999888766 4688888
Q ss_pred CCCCe--EEEEeec--CCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCC
Q 046871 330 LATRE--SLLLCTG--EHPILQLALHDDN---IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 330 ~~~~~--~~~~~~~--~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~ 374 (764)
..+-. .+.+... .-.+.--.+.+|. +++|-.|..|++|.+-...+
T Consensus 797 Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 797 AQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 76432 3322221 1112222234454 67777899999998765443
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=2.9e-14 Score=159.99 Aligned_cols=283 Identities=18% Similarity=0.222 Sum_probs=196.1
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
|++ .|..+..+..|...+..++.+++++.+|++|+.||+|++||.........
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------------- 1086 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------------- 1086 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-------------------------
Confidence 664 57888999999999999999977779999999999999999975311100
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--c-----eeEEeccC-CcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG--S-----KTIKLRGH-TDN 261 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~--~-----~~~~l~~h-~~~ 261 (764)
......+.......++++.+.+.++.+|+++.||.|++.++... + +......+ .+.
T Consensus 1087 ----------------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~ 1150 (1431)
T KOG1240|consen 1087 ----------------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGV 1150 (1431)
T ss_pred ----------------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCc
Confidence 01111223335678999999999999999999999999998752 1 11112222 223
Q ss_pred eEE-EEEcC-CCC-EEEEEeCCCcEEEEeCCCCeeeEEEe--eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE
Q 046871 262 IRS-LLLDS-TGR-YCLSGSSDSMIRLWDLGQQRCIHSYA--VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 262 V~~-l~~sp-dg~-~l~sgs~Dg~I~iwdl~~~~~~~~l~--~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
+.+ -++.. ++. .++.+..-+.|..||+++.....+++ ...+.|++++.+|.+.++++|+..|.+.+||++=+.++
T Consensus 1151 vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1151 VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred eEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee
Confidence 333 33332 233 67888888999999998877666554 34578999999999999999999999999999988888
Q ss_pred EEeec--CCCeEEEEeeCCc------eEEEe-CCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccC
Q 046871 337 LLCTG--EHPILQLALHDDN------IWVAT-TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 337 ~~~~~--~~~V~~l~~spd~------l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
....+ ..++..+..+|-. +.+++ ..+.|.+|++.++....++-...+... +.+. .+.
T Consensus 1231 ~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~--ls~~---------~Ps--- 1296 (1431)
T KOG1240|consen 1231 LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI--LSYA---------LPS--- 1296 (1431)
T ss_pred ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc--hhhh---------ccc---
Confidence 76664 4577777776543 33444 468899999999987777654311111 1110 000
Q ss_pred CCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEE
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~ 452 (764)
. ....++.-....+.+..-+.+++||++|+.|+.||..+-+.
T Consensus 1297 --~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1297 --N-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred --c-cCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 0 01112333344455555667999999999999999875443
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2.4e-15 Score=152.60 Aligned_cols=257 Identities=14% Similarity=0.222 Sum_probs=200.4
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCc
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY 128 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~ 128 (764)
+.+|.+|+.|++.|.|-.+|..+ ..+...+.. ...|.++.|..+..+++......++||| ..|..++.++.|. .
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t--~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD--~~GtElHClk~~~-~ 211 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVT--KKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYD--NNGTELHCLKRHI-R 211 (545)
T ss_pred cCCccEEEecCCccceeeeeccc--ceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEec--CCCcEEeehhhcC-c
Confidence 78999999999999999999998 444444332 4568899998876666666778899999 5688888888765 5
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
|..+.|. +..-+|++++..|.++.-|+.++..+
T Consensus 212 v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklV---------------------------------------------- 244 (545)
T KOG1272|consen 212 VARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLV---------------------------------------------- 244 (545)
T ss_pred hhhhccc-chhheeeecccCCceEEEeechhhhh----------------------------------------------
Confidence 8899999 67889999999999999999885332
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
..+....+.+..++-+|-...+-+|..+|+|.+|.....+++.++..|.++|.+|++.++|+|++|++.|..++|||+
T Consensus 245 --a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 --ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred --HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 234445667788888898888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC-CC---eEEEEee--cCCCeEEEEeeCCc--eEEEeC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA-TR---ESLLLCT--GEHPILQLALHDDN--IWVATT 360 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~-~~---~~~~~~~--~~~~V~~l~~spd~--l~~~s~ 360 (764)
+....++++.. .-+...+++|..| ++..+....|.||.-. .+ .....+. ...+|..+.|.|-. |-+|..
T Consensus 323 R~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 323 RNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 99887777664 3456778888665 3344455678999532 21 1111222 25589999999977 444544
Q ss_pred CCc
Q 046871 361 DSS 363 (764)
Q Consensus 361 dg~ 363 (764)
.|.
T Consensus 400 ~G~ 402 (545)
T KOG1272|consen 400 GGI 402 (545)
T ss_pred CCc
Confidence 443
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=6e-14 Score=144.95 Aligned_cols=240 Identities=13% Similarity=0.156 Sum_probs=158.1
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCC--CCccceeecccccceeEEEE-----eCCC-eEEEEeCCCcEEEecCCCCCeeee
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADD--VGSCSATFESHVDWVNDAVL-----VGDN-TLVSCSSDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~--~~~~~~~l~~h~~~V~~v~~-----s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~ 120 (764)
+-.|++|+-.-. ..+.+|+.... ....+....-....-.|-.| .+++ -++.+-.-|.|.+.|... ..+.
T Consensus 132 ~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~--~~~s 208 (636)
T KOG2394|consen 132 SGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN--FEVS 208 (636)
T ss_pred cCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh--hHHH
Confidence 455666655432 35788887631 11111111101111222233 2344 577888889999888633 2221
Q ss_pred e-c----cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCC
Q 046871 121 T-L----RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195 (764)
Q Consensus 121 ~-l----~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (764)
. + ......|+|+.|.|.+...++.+-.+|.+.+||.+......... . .....+..
T Consensus 209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~-------~-~~~k~~~~------------ 268 (636)
T KOG2394|consen 209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS-------Y-QALKDGDQ------------ 268 (636)
T ss_pred HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc-------c-cccCCCCe------------
Confidence 1 1 12346899999998888888899999999999884311110000 0 00000000
Q ss_pred CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE
Q 046871 196 NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275 (764)
Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 275 (764)
-.+..+........+....--.+.|..++|+|||++||+.+.||.+||+|..+.+.+..++..-+...|++|||||++|+
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred eEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 00111111111111122223355899999999999999999999999999999888888887788999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 276 SGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 276 sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
+|+.|--|.||.+...+.+..-++|..+|..++|+|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999997
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.6e-15 Score=150.75 Aligned_cols=224 Identities=18% Similarity=0.248 Sum_probs=163.5
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceee-cccccceeEEEEeCC---CeEEEEeCC
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVGD---NTLVSCSSD 104 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~d---~~l~s~s~D 104 (764)
....||.+.|+||+| +.+|.+|++|+.|-.+.|||... .+.+..+ .+|...|.++.|.|. ..+++|+.|
T Consensus 44 ~eL~GH~GCVN~LeW-----n~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEW-----NADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhccccceecceee-----cCCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 445799999999999 79999999999999999999875 4555554 589999999999985 278999999
Q ss_pred CcEEEecCCC---------CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 105 TTLKTWNCSS---------DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 105 g~V~vWd~~~---------~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
..|+++|+.. .....+.+..|.+.|..++..|...+.+.+++.||+|+-+|++....-......
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~------- 189 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC------- 189 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc-------
Confidence 9999999853 123456677899999999999666699999999999999999864221110000
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-----
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG----- 249 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~----- 249 (764)
..........--...|+.++| +..+|++|+.|-..++||.+..
T Consensus 190 -------------------------------~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 190 -------------------------------PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred -------------------------------cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 000011112224578999999 5678999999999999994321
Q ss_pred ---c----------eeEEe-ccCC-----------cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE
Q 046871 250 ---S----------KTIKL-RGHT-----------DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY 297 (764)
Q Consensus 250 ---~----------~~~~l-~~h~-----------~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l 297 (764)
. ++..+ .+|. ..++-++|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 239 s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 239 SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1 12222 1222 12456789999988777666667999999877655443
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.6e-13 Score=132.25 Aligned_cols=196 Identities=20% Similarity=0.331 Sum_probs=140.6
Q ss_pred cceeEEEEeCC-CeEEEEeCCCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 046871 85 DWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162 (764)
Q Consensus 85 ~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~ 162 (764)
..+..++|++. ..++++..|-.|++|+- + .++...++ .....|+|++|-|-...-|+.|...| |.+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~k-s-st~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDK-S-STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEecc-C-CCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34667889886 37889999999999994 3 34444443 23468999999987778888888877 999988653222
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-CCeE
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-EKVV 241 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-dg~I 241 (764)
....... ......+....+| ..|++++|++||..+++++. |..|
T Consensus 176 ~r~~~~~----------------------------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 176 NRNIRMM----------------------------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred ccccccc----------------------------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence 1110000 0001122233445 78999999999999998875 5689
Q ss_pred EEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEE
Q 046871 242 RVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYS 318 (764)
Q Consensus 242 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 318 (764)
.|||+.++..+.-.....+.++-+.|||||.+|++++-|+..++|+..............+.|...+|+|+|++|+-
T Consensus 221 ~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred EEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEE
Confidence 99999999876655445678899999999999999999999999965433222222234558999999999988753
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.2e-14 Score=144.82 Aligned_cols=199 Identities=21% Similarity=0.254 Sum_probs=151.1
Q ss_pred eEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCe
Q 046871 39 NCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGT 117 (764)
Q Consensus 39 ~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~ 117 (764)
.+++| +.+|..|++|+.||++|||++.+ ...+.....|...|.++.|+||+ .|++.+.| ..+||+. .++.
T Consensus 148 k~vaf-----~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~-~~g~ 218 (398)
T KOG0771|consen 148 KVVAF-----NGDGSKLATGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSV-NTGA 218 (398)
T ss_pred eEEEE-----cCCCCEeeeccccceEEEEecCc--chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEe-ccCc
Confidence 45666 78999999999999999999887 66677788999999999999998 88899999 8999997 4565
Q ss_pred eeeeccc--cCCceEEEEEecCCC-----cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 118 CIRTLRQ--HSDYVTCLAAAEKNS-----NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 118 ~~~~l~~--h~~~V~~l~~~p~~~-----~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
++..... .......+.|+ .++ .+++.....+.|+.||+....
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~------------------------------ 267 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWS------------------------------ 267 (398)
T ss_pred hhhhcCCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeec------------------------------
Confidence 5555442 22345667777 444 333444455677777775321
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ccCCcCeEEEEEcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-RGHTDNIRSLLLDS 269 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp 269 (764)
... -............|.+++.+++|++++.|+.||.|.|++..+.+.++.. +.|...|+.+.|+|
T Consensus 268 ------------~~~-~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 268 ------------GSN-FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred ------------ccc-ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 000 0001112223457999999999999999999999999999988877655 47999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~ 290 (764)
|.+++++.+.|.++.+..+.-
T Consensus 335 dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 335 DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcCcccccccCCceeEEEEee
Confidence 999999999999998887643
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.4e-13 Score=151.92 Aligned_cols=231 Identities=10% Similarity=-0.001 Sum_probs=156.3
Q ss_pred CCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC---CcEEEecCCCCC-eeeeeccccCCceEEEEEe
Q 046871 61 DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD---TTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAA 135 (764)
Q Consensus 61 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D---g~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~ 135 (764)
+..|.+||.+.. ..+.+..|...+.+..|+||+ .|+.++.+ ..|++||+.... ..+..+.+| ...++|+
T Consensus 183 ~~~i~i~d~dg~---~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGF---NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS 256 (429)
T ss_pred eEEEEEECCCCC---CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence 468999998753 255677788899999999998 67766543 369999984322 233334444 3467999
Q ss_pred cCCCcEEEEE-eCCCeEEEE--eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcccee
Q 046871 136 EKNSNIVASG-GLGAEVFIW--DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIA 212 (764)
Q Consensus 136 p~~~~~lasg-~~dg~I~iw--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 212 (764)
++++.|+.+ +.+|.+.|| |+.++. ...
T Consensus 257 -PDG~~La~~~~~~g~~~Iy~~d~~~~~-------------------------------------------------~~~ 286 (429)
T PRK01742 257 -PDGSRLAFASSKDGVLNIYVMGANGGT-------------------------------------------------PSQ 286 (429)
T ss_pred -CCCCEEEEEEecCCcEEEEEEECCCCC-------------------------------------------------eEe
Confidence 677777665 467766665 444321 112
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGG-TEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~ 290 (764)
+..+...+.+.+|+|||+.|+..+ .++..+||++... .....+ .+.. ....|+|||++|+.++.++ +.+||+.+
T Consensus 287 lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 287 LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 334455677899999999877654 5677888876432 222223 3433 4578999999998887765 55699988
Q ss_pred CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC--CCeEEEEee-cCCCeEEEEeeCC
Q 046871 291 QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA--TRESLLLCT-GEHPILQLALHDD 353 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~--~~~~~~~~~-~~~~V~~l~~spd 353 (764)
++.......+ ...++.|+|+|++|+.++.++.+.+|++. ++.....+. +.+.+...+|+|-
T Consensus 363 g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 363 GSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 8754332222 33567899999999999999988888753 465555554 4566788888873
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=7.1e-14 Score=154.17 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=154.3
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCC---CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEE-eCCCc
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRD---GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSC-SSDTT 106 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~-s~Dg~ 106 (764)
.+|...|.+.+| ||||++|+..+.+ ..|++||+.++..+.+..+.+|. ..++|+||+ .|+.+ +.+|.
T Consensus 200 t~~~~~v~~p~w-----SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 200 NRSSQPLMSPAW-----SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ccCCCccccceE-----cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCc
Confidence 356777888888 8999999987654 46999999875444454455543 468999998 56655 46887
Q ss_pred EEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEE-EEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 107 LKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVA-SGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 107 V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+.||.+...+.....+..+...+...+|+ +++..|+ ++..++...+|+++....
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~------------------------ 326 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGG------------------------ 326 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCC------------------------
Confidence 66664422333445566677778899999 6676555 555678888888753210
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
....+ .+.. ++.+|+|+|++|+.++.++ +.+||+.+++.......+ ...++
T Consensus 327 -----------------------~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~ 377 (429)
T PRK01742 327 -----------------------GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESP 377 (429)
T ss_pred -----------------------CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCc
Confidence 00001 1222 4578999999998887765 556999888754333222 33567
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC--CCCeeeEEEeeecCceEEEEEcCC
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDL--GQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl--~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
.|+|||++|+.++.++.+.+|++ .+++.++.+..|.+.+...+|+|-
T Consensus 378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 89999999999999998888876 368888999888888999999985
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.6e-14 Score=146.57 Aligned_cols=232 Identities=22% Similarity=0.298 Sum_probs=166.1
Q ss_pred eeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ccCCcCeEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 046871 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-RGHTDNIRSLLLDS--TGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp--dg~~l~sgs~Dg~I~iwd 287 (764)
..+.+|.+-|.++.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|..+|.++.|-| +.+.+++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 457899999999999999999999999999999999888877766 58999999999998 557899999999999999
Q ss_pred CCC----------CeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCeEEE-------Ee----ecCCCe
Q 046871 288 LGQ----------QRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRESLL-------LC----TGEHPI 345 (764)
Q Consensus 288 l~~----------~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~~~~-------~~----~~~~~V 345 (764)
+.. ......+..|...|..|+..|++ ..|.+++.||+|+-+|++...... .+ ..--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 23455577899999999999998 677899999999999998632211 00 011246
Q ss_pred EEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeecCCc--c----eeccc-cccccccccCCCCCcccCCCCCCccc
Q 046871 346 LQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRGGS--F----IAGNL-SFSRARVSLEGSTPVSSRFKEPNFTI 415 (764)
Q Consensus 346 ~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~~~~--~----~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~i 415 (764)
.|+.++|.. |++|+.|-..++||.....+ .+..... . ...++ -|+|... ..+...+
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~~~~~~~pp~~~~cv~yf~p~hl------------kn~~gn~ 269 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSDGTMNTCPPKDCRCVRYFSPGHL------------KNSQGNL 269 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCCccccCCCCcccchhheecCccc------------cCccccc
Confidence 788899887 99999999999999643211 1111000 0 00011 1222111 0000000
Q ss_pred c-CCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 416 P-GIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 416 ~-g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
. -...++-+.|+|+|.-|+..-.--.|+++|+..++..-.|
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 0223667789999987665544558999999988766554
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.1e-14 Score=143.79 Aligned_cols=193 Identities=16% Similarity=0.186 Sum_probs=152.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee
Q 046871 221 YALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH 300 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h 300 (764)
.+++|+.+|..+++|+.||.+|+|+..+...+.....|...|.++.|+|||++|++-+.| ..+||+.+++.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888899999999999999999999999 8999999999887776632
Q ss_pred --cCceEEEEEcCCC-----CEEEEecCCCcEEEEeCCCCeE------EEEeecCCCeEEEEeeCCc--eEEEeCCCcEE
Q 046871 301 --TDSVWALASTPTF-----SHVYSGGRDLSLYLTDLATRES------LLLCTGEHPILQLALHDDN--IWVATTDSSVH 365 (764)
Q Consensus 301 --~~~V~~l~~spd~-----~~l~sgs~Dg~I~iwd~~~~~~------~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~ 365 (764)
......+.|+.|. ..++.-...+.|+.||+..... .........|++++++++| ++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 2235666777665 3333444566777777653221 1223345689999999999 88899999999
Q ss_pred EeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEE
Q 046871 366 RWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLW 445 (764)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lW 445 (764)
|++..+.+..+.++..|.. -|+.+.|+||.+++++.+.|.+.+|-
T Consensus 307 i~~~~~lq~~~~vk~aH~~-----------------------------------~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLG-----------------------------------FVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEeceeeeeEeehhhhee-----------------------------------eeeeEEEcCCcCcccccccCCceeEE
Confidence 9999887776666544333 36677888899999999999988888
Q ss_pred Eccc
Q 046871 446 EITR 449 (764)
Q Consensus 446 di~t 449 (764)
-+.-
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7763
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=8.8e-15 Score=148.57 Aligned_cols=230 Identities=15% Similarity=0.144 Sum_probs=195.7
Q ss_pred ceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCC
Q 046871 86 WVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 86 ~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~ 164 (764)
.-..+.|+.+| .++.++..|.|-.+|+ .+......+. -...|.++.|. .+.+++|++- ...+++||-..-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw-~t~~L~~Ei~-v~Etv~Dv~~L-Hneq~~AVAQ-K~y~yvYD~~Gt----- 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDW-VTKKLHFEIN-VMETVRDVTFL-HNEQFFAVAQ-KKYVYVYDNNGT----- 201 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeec-ccceeeeeee-hhhhhhhhhhh-cchHHHHhhh-hceEEEecCCCc-----
Confidence 44567888888 8999999999999997 4455555553 34578899998 6777777775 457999997541
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iw 244 (764)
.+.-++. ...|..+.|-|-.-+|++++..|.++.-
T Consensus 202 --------------------------------------------ElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~ 236 (545)
T KOG1272|consen 202 --------------------------------------------ELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQ 236 (545)
T ss_pred --------------------------------------------EEeehhh-cCchhhhcccchhheeeecccCCceEEE
Confidence 1111222 3557889999988889999999999999
Q ss_pred eCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCc
Q 046871 245 DPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLS 324 (764)
Q Consensus 245 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~ 324 (764)
|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|.....+++..+-.|.++|.+|++.++|.|++|.+.|..
T Consensus 237 DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 237 DVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred eechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence 99999999999888899999999999989999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeC
Q 046871 325 LYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPA 369 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~ 369 (764)
++|||++....+..+....+...+++|..++++++....|.||.-
T Consensus 317 ~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred eeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehh
Confidence 999999998887777778889999999999999999999999964
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.9e-12 Score=126.20 Aligned_cols=236 Identities=12% Similarity=0.181 Sum_probs=161.6
Q ss_pred eEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccc--cceeEEEEeCCCeE-EEEeCC------CcEEE
Q 046871 39 NCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHV--DWVNDAVLVGDNTL-VSCSSD------TTLKT 109 (764)
Q Consensus 39 ~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~--~~V~~v~~s~d~~l-~s~s~D------g~V~v 109 (764)
.+++| +.|...++.|..+ -.+||+.+. .+.....+.+. -.+..+.|-. ++| +.|+.+ ..|.|
T Consensus 9 lsvs~-----NQD~ScFava~~~-Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR~-N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 9 LSVSF-----NQDHSCFAVATDT-GFRIYNCDP--FKESASRQFIDGGFKIVEMLFRS-NYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eEEEE-----ccCCceEEEEecC-ceEEEecCc--hhhhhhhccccCchhhhhHhhhh-ceEEEecCCCCCCCCCceEEE
Confidence 33666 6777788777655 589999876 22222222222 2233333322 333 334333 46999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
|| +....++.++. ...+|.++.+. .+.+++.- .+.|++|...+......
T Consensus 80 WD-D~k~~~i~el~-f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~------------------------- 128 (346)
T KOG2111|consen 80 WD-DLKERCIIELS-FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLH------------------------- 128 (346)
T ss_pred Ee-cccCcEEEEEE-eccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhhee-------------------------
Confidence 99 45567777665 56789999988 44555543 56799999875311110
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCce--eEEeccCCcCeEEEE
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEKVVRVWDPRTGSK--TIKLRGHTDNIRSLL 266 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~ 266 (764)
............+++-..+..+||. |-.-|.|+|-|+...+. ...+..|.+.|.|++
T Consensus 129 --------------------~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~ 188 (346)
T KOG2111|consen 129 --------------------VIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVA 188 (346)
T ss_pred --------------------eeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEE
Confidence 0011111222444443334445554 44568999999987655 467889999999999
Q ss_pred EcCCCCEEEEEeCCCc-EEEEeCCCCeeeEEEeeec--CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 267 LDSTGRYCLSGSSDSM-IRLWDLGQQRCIHSYAVHT--DSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 267 ~spdg~~l~sgs~Dg~-I~iwdl~~~~~~~~l~~h~--~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
++-+|..+||+|..|+ |||||..+|..++.++... ..|.+|+|+|+..+|+.+|.-|+|.|+.++...
T Consensus 189 Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 189 LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999998 8999999999999997543 459999999999999999999999999987543
No 218
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=8.6e-14 Score=142.33 Aligned_cols=295 Identities=14% Similarity=0.165 Sum_probs=213.9
Q ss_pred cceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEE
Q 046871 76 CSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFI 153 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~i 153 (764)
....|..|.+.|+.+.|...| .|+++|.|..|.+||+......+....+|...|..-.|.|. +...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 456678999999999999887 89999999999999997666666677889999988888863 4568899999999998
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLL 232 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l 232 (764)
=.+..... ......+..|.+.|+-++.-|+ ..-|
T Consensus 214 s~i~~t~~---------------------------------------------~e~t~rl~~h~g~vhklav~p~sp~~f 248 (559)
T KOG1334|consen 214 SEILETGY---------------------------------------------VENTKRLAPHEGPVHKLAVEPDSPKPF 248 (559)
T ss_pred eeeccccc---------------------------------------------eecceecccccCccceeeecCCCCCcc
Confidence 76653211 1112346678999999999884 4568
Q ss_pred EEEeCCCeEEEEeCCCCceeEEec---cCCc---CeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe------eeEEEee
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLR---GHTD---NIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQR------CIHSYAV 299 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~---~h~~---~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~------~~~~l~~ 299 (764)
.+++.|+.+.-+|++++.....+. .+.. ...+|+..|... .+++++.|..+++||.+.-. .+..+..
T Consensus 249 ~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p 328 (559)
T KOG1334|consen 249 LSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP 328 (559)
T ss_pred cccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC
Confidence 899999999999999875544332 2233 567889999665 79999999999999986421 2233332
Q ss_pred e------cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE------------E-EEee-c--CCCeEEEEeeC-Cc--
Q 046871 300 H------TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES------------L-LLCT-G--EHPILQLALHD-DN-- 354 (764)
Q Consensus 300 h------~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~------------~-~~~~-~--~~~V~~l~~sp-d~-- 354 (764)
| .-.|++++|+.++.-+.++-.|-.|+++.-.-+.- + ..++ | ...|.++-|-. ..
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 2 23589999997777677777788899985432211 1 1122 2 23477787754 33
Q ss_pred eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEE
Q 046871 355 IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVL 434 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~ 434 (764)
+++|+.-|.|.||+-.+++.++.+.+... +++++.-.| ---.||
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP-----------------------------------~~PvLA 452 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHP-----------------------------------HLPVLA 452 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCC-----------------------------------CCchhh
Confidence 77777779999999999998888776555 554543332 224689
Q ss_pred EeeCCCcEEEEEccccE
Q 046871 435 TKDAAGSVKLWEITRGV 451 (764)
Q Consensus 435 t~s~dG~V~lWdi~tg~ 451 (764)
+.+-|..|+||--.+.+
T Consensus 453 sSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 453 SSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCccceeeecCCccc
Confidence 99999999999764433
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.9e-12 Score=134.93 Aligned_cols=276 Identities=21% Similarity=0.271 Sum_probs=202.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEE-EEeCCCcEEEEeCCCCCCccceeecccc--cceeEEEEeCC-CeEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLF-TGSRDGTLKRWSLADDVGSCSATFESHV--DWVNDAVLVGD-NTLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~-sgs~Dg~I~iWd~~~~~~~~~~~l~~h~--~~V~~v~~s~d-~~l~s~s~Dg~V~ 108 (764)
+|...-+.|.+ ||||+|++ ||.+--.|++||+.+- ...|+-|. ..|.-..++.| ..++.-..|.+|-
T Consensus 49 e~p~ast~ik~-----s~DGqY~lAtG~YKP~ikvydlanL----SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKV-----SPDGQYLLATGTYKPQIKVYDLANL----SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEe-----cCCCcEEEEecccCCceEEEEcccc----eeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 57777888888 89999764 6677889999999862 33445453 33444444555 3677777888888
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+..- .|....+- -...-..|+++.+...+++.|+ ...|+-++++.+.-
T Consensus 120 fHak--~G~hy~~R--IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrf--------------------------- 167 (703)
T KOG2321|consen 120 FHAK--YGRHYRTR--IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRF--------------------------- 167 (703)
T ss_pred ehhh--cCeeeeee--cCcCCccccccCCCccEEEeec-CcceEEEEcccccc---------------------------
Confidence 7662 23322211 1223457788766666665554 44578788877522
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec------cCCc--
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR------GHTD-- 260 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~------~h~~-- 260 (764)
+..+....+.++++.+++-..+|++|+.+|.|.+||.++...+..+. .|.+
T Consensus 168 ---------------------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 168 ---------------------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred ---------------------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 22234445789999999988999999999999999999887766653 2333
Q ss_pred ---CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec--CceEEEEEcCC--CCEEEEecCCCcEEEEeCCCC
Q 046871 261 ---NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT--DSVWALASTPT--FSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 261 ---~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~--~~V~~l~~spd--~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
.|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. |. -+|..+.|.+. ...++|.. ...++|||-.+|
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G 304 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG 304 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEecc-hHHhhhcccccC
Confidence 49999999999999999999999999999988776544 43 46889999664 45566554 568999999999
Q ss_pred eEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 334 ESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 334 ~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
+....+.....+..+|+-|++ +++|-.++.+..|=+...
T Consensus 305 k~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 305 KPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 999999888889999999988 888888888877766543
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.6e-12 Score=133.94 Aligned_cols=275 Identities=13% Similarity=0.126 Sum_probs=196.5
Q ss_pred ccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeeeccccC--CceEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 046871 82 SHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRTLRQHS--DYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~--~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~ 157 (764)
.|...-+.|..+||| .+++|..--.|++||+.. .--.+..|. ..|.-.-.+ .|-..++.-..|+.|-+....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---LSLKFERhlDae~V~feiLs-DD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---LSLKFERHLDAEVVDFEILS-DDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc---ceeeeeecccccceeEEEec-cchhhheEeecCceeeehhhc
Confidence 466777889999998 567888888999999732 222333343 334444444 444445555556666554322
Q ss_pred CCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC
Q 046871 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT 237 (764)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~ 237 (764)
.. ... + .-...-..++++.-..-|++++.
T Consensus 125 G~-------------------------------------------------hy~-~-RIP~~GRDm~y~~~scDly~~gs 153 (703)
T KOG2321|consen 125 GR-------------------------------------------------HYR-T-RIPKFGRDMKYHKPSCDLYLVGS 153 (703)
T ss_pred Ce-------------------------------------------------eee-e-ecCcCCccccccCCCccEEEeec
Confidence 10 000 0 00111234444432333555556
Q ss_pred CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee------ecC-----ceEE
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV------HTD-----SVWA 306 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~------h~~-----~V~~ 306 (764)
...|+-+++..|..+..|....+.++++.+++...+|++|+.+|.|-.||.++...+.++.. |.+ .|++
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceE
Confidence 67789999999999999988889999999999999999999999999999988776666543 222 3999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeecC
Q 046871 307 LASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG--EHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 307 l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~~ 381 (764)
+.|+.+|-.+++|..+|.|.|||+++.+++..-.| .-+|..+.|.+.+ .++......++|||-.++++...+..
T Consensus 234 l~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp- 312 (703)
T KOG2321|consen 234 LKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP- 312 (703)
T ss_pred EEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-
Confidence 99999999999999999999999999999888776 4589999997764 55666667899999999887655542
Q ss_pred CcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 382 GSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 382 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
...+...++.|++.+++++-.++.+..|=+.
T Consensus 313 ------------------------------------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 313 ------------------------------------TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ------------------------------------cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 2235567888899999999988877666544
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=8.9e-12 Score=133.15 Aligned_cols=279 Identities=14% Similarity=0.182 Sum_probs=178.8
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEE-EEeCCCcEEEecCCCCCeeeeecccc-
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLV-SCSSDTTLKTWNCSSDGTCIRTLRQH- 125 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~-s~s~Dg~V~vWd~~~~~~~~~~l~~h- 125 (764)
++||++++++++||.|.++|+.+ .+.+.++..... ..++++++|| +++ ++..++.+.++|. .+.+.++.+...
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~-~tle~v~~I~~~~ 120 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLAT--GKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDA-ETLEPVKTIPTGG 120 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTS--SSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEET-TT--EEEEEE--E
T ss_pred cCCCCEEEEEcCCCeEEEEECCc--ccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecc-ccccceeeccccc
Confidence 89999999999999999999998 667778776444 5779999998 554 4456899999996 556666665432
Q ss_pred ------CCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccc
Q 046871 126 ------SDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSIS 199 (764)
Q Consensus 126 ------~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 199 (764)
...+..+..++....++++--..+.|.+-|......
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-------------------------------------- 162 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-------------------------------------- 162 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--------------------------------------
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--------------------------------------
Confidence 235677777744333555555557887778765210
Q ss_pred ccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEec----cCCcCeEEEE-------E
Q 046871 200 AHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPRTGSKTIKLR----GHTDNIRSLL-------L 267 (764)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~-------~ 267 (764)
................|+|++++++.+ ..+..|-++|..+++.+..+. .|..++..+- |
T Consensus 163 ---------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 163 ---------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp ---------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred ---------cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 001111223456678999999987664 567789999999988776553 2333333321 2
Q ss_pred --cCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe----cCCCcEEEEeCCCCeEEEEeec
Q 046871 268 --DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG----GRDLSLYLTDLATRESLLLCTG 341 (764)
Q Consensus 268 --spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg----s~Dg~I~iwd~~~~~~~~~~~~ 341 (764)
...+...++.-....+.+||..+.+.++++....++ ..+..+|++++++.. ...+.|.++|.++.+.+..+..
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 122333333333445668999999999999977666 788889999999987 4558999999999988777764
Q ss_pred CC--CeEEEEeeCCc--eEEEeCCC--cEEEeeCCCCCCceeee
Q 046871 342 EH--PILQLALHDDN--IWVATTDS--SVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 342 ~~--~V~~l~~spd~--l~~~s~dg--~I~iwd~~~~~~~~~~~ 379 (764)
.. .+..+.|+++| +|++..++ .|.+||..+.+..+.+.
T Consensus 313 ~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 33 49999999999 67766543 69999999998888776
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.3e-11 Score=122.22 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=176.0
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec-ccccceeEEEEeCCC--eEEEEeCCCcEEEecCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE-SHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~-~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~ 113 (764)
.+..++| ++.-..+|++..|-+|++||-... +...++ .....|.|++|-|.+ .|+.|+.. -|.+|...
T Consensus 100 dlr~~aW-----hqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s 170 (445)
T KOG2139|consen 100 DLRGVAW-----HQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDS 170 (445)
T ss_pred ceeeEee-----chhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcC
Confidence 4566677 454556788899999999998762 233333 235679999999985 67777764 48999864
Q ss_pred CCCeeee-------------eccccCCceEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 114 SDGTCIR-------------TLRQHSDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 114 ~~~~~~~-------------~l~~h~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
.+...-+ ...+| .+|++|+|. +|+..+++++. |..|.+||..++....
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~p---------------- 232 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIP---------------- 232 (445)
T ss_pred cccccccccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCccc----------------
Confidence 4332211 12234 689999999 78888888875 5689999998753221
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeccC
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT-GSKTIKLRGH 258 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h 258 (764)
. .....+.+.-+.|+|||.+|+++.-|+..++|.... .....-. -.
T Consensus 233 -------------------------------L-~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lg 279 (445)
T KOG2139|consen 233 -------------------------------L-IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LG 279 (445)
T ss_pred -------------------------------c-cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-cc
Confidence 0 112356688899999999999999999999995443 3333322 23
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Ce--------------eeEEEe-----e----ecCceEEEEEcCCCC
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QR--------------CIHSYA-----V----HTDSVWALASTPTFS 314 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~--------------~~~~l~-----~----h~~~V~~l~~spd~~ 314 (764)
.+.|...+|+|+|++|+-++. |.=++|.+.- ++ .+..+. . -.+.+.+++|+|.|.
T Consensus 280 sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe 358 (445)
T KOG2139|consen 280 SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE 358 (445)
T ss_pred CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC
Confidence 558999999999998665442 2334554321 00 011110 1 146789999999999
Q ss_pred EEEEecCCC--------cEEEEeCCCCeEEEEee----cCCCeEEEEeeCCc-----eEEEeCCCcEEEeeC
Q 046871 315 HVYSGGRDL--------SLYLTDLATRESLLLCT----GEHPILQLALHDDN-----IWVATTDSSVHRWPA 369 (764)
Q Consensus 315 ~l~sgs~Dg--------~I~iwd~~~~~~~~~~~----~~~~V~~l~~spd~-----l~~~s~dg~I~iwd~ 369 (764)
++++.-..+ .|.+||.+....+.... .......++|+|-. |.++=..|.|.-|++
T Consensus 359 yLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 359 YLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 999765433 46778877655444331 12224455665533 444445677777765
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=4.6e-11 Score=127.70 Aligned_cols=323 Identities=14% Similarity=0.107 Sum_probs=199.2
Q ss_pred CcEEE-EEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCce
Q 046871 52 VDYLF-TGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYV 129 (764)
Q Consensus 52 ~~~L~-sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V 129 (764)
+++++ +-..+|.|.+.|..+ .+.+.++.........+.|++|+ ++++++.||.|.++|+ ...+.+.++.... ..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~-~~~~~v~~i~~G~-~~ 80 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDL-ATGKVVATIKVGG-NP 80 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEET-TSSSEEEEEE-SS-EE
T ss_pred ccEEEEEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEEC-CcccEEEEEecCC-Cc
Confidence 34554 455689999999988 67788887655544557889987 7888889999999998 4577777776544 46
Q ss_pred EEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 130 TCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 130 ~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
.+++++ +++++++++. ..+.+.++|.++.+....... ..
T Consensus 81 ~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~---------------------------------------~~ 120 (369)
T PF02239_consen 81 RGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPT---------------------------------------GG 120 (369)
T ss_dssp EEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE-----------------------------------------E
T ss_pred ceEEEc-CCCCEEEEEecCCCceeEeccccccceeeccc---------------------------------------cc
Confidence 789999 7788777664 689999999987432211000 00
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeE-EeccCCcCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPRTGSKTI-KLRGHTDNIRSLLLDSTGRYCLSG-SSDSMIRL 285 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~sg-s~Dg~I~i 285 (764)
.........+.++..++....++.. -..+.|.+.|....+.+. +............|+|++++++++ ..+..|-+
T Consensus 121 --~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 121 --MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp --E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred --ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEE
Confidence 0001134567788888877755544 445889888987664432 222234567789999999987664 55778999
Q ss_pred EeCCCCeeeEEEe----eecCceEEEEEcCCC----------CEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEee
Q 046871 286 WDLGQQRCIHSYA----VHTDSVWALASTPTF----------SHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALH 351 (764)
Q Consensus 286 wdl~~~~~~~~l~----~h~~~V~~l~~spd~----------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~s 351 (764)
+|..+++.+..+. .|..++..+ .+|.. ...++.-....+.+||..+.+.+..+...+.-.-+..|
T Consensus 199 iD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~th 277 (369)
T PF02239_consen 199 IDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTH 277 (369)
T ss_dssp EETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--
T ss_pred EeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecC
Confidence 9999988877654 243333332 23322 22222222335567888888999888865555888999
Q ss_pred CCc--eEEE----eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeE
Q 046871 352 DDN--IWVA----TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHE 425 (764)
Q Consensus 352 pd~--l~~~----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~ 425 (764)
|++ +|+. ...++|.++|.++.+....+... ....+....
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~-----------------------------------~~~~~~h~e 322 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG-----------------------------------PGKRVVHME 322 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH-----------------------------------HT--EEEEE
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcceeEEEecc-----------------------------------CCCcEeccE
Confidence 999 8887 34589999999887444333210 011267889
Q ss_pred EecCCcEEEEe--eCCCcEEEEEccccEEeeec
Q 046871 426 ILNNRRHVLTK--DAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 426 ~s~dg~~l~t~--s~dG~V~lWdi~tg~~i~~~ 456 (764)
|++||+++..+ +.+|.|.+||..|.++++.+
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99999976544 44447999999999999887
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=1.8e-12 Score=127.27 Aligned_cols=251 Identities=18% Similarity=0.304 Sum_probs=174.7
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC---CCccceeeccc------------ccceeEEEEeCCC---
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD---VGSCSATFESH------------VDWVNDAVLVGDN--- 96 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~---~~~~~~~l~~h------------~~~V~~v~~s~d~--- 96 (764)
..-|.++.| +..|.+||||..+|.|.++.-+.. +......++.| ...|+.+.|.+++
T Consensus 25 adiis~vef-----~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEF-----DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEe-----ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 356889998 689999999999999999976532 22244555555 3468899999874
Q ss_pred eEEEEeCCCcEEEecCCCCCeee----------------------------------eec-cccCCceEEEEEecCCCcE
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCI----------------------------------RTL-RQHSDYVTCLAAAEKNSNI 141 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~----------------------------------~~l-~~h~~~V~~l~~~p~~~~~ 141 (764)
.++....|.+|++|.+...+... +.+ ..|..-|.++.+. .|...
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et 178 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKET 178 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-Cccce
Confidence 67888899999999874322111 111 2477778999998 78888
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEE
Q 046871 142 VASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVY 221 (764)
Q Consensus 142 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~ 221 (764)
++++. |=.|.+|.++-.. +...+.+... ..+..-..-|+
T Consensus 179 ~lSAD-dLRINLWnlei~d-----------------------------------~sFnIVDIKP-----~nmEeLteVIT 217 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIID-----------------------------------QSFNIVDIKP-----ANMEELTEVIT 217 (433)
T ss_pred Eeecc-ceeeeeccccccC-----------------------------------CceeEEEccc-----cCHHHHHHHHh
Confidence 88775 6679999986411 0111111110 11122234578
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee------EE----------eccCCcCeEEEEEcCCCCEEEEEeCCCcEE
Q 046871 222 ALAMND-SGNLLVSGGTEKVVRVWDPRTGSKT------IK----------LRGHTDNIRSLLLDSTGRYCLSGSSDSMIR 284 (764)
Q Consensus 222 ~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~------~~----------l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~ 284 (764)
+..|+| ..+.++..+..|.|++.|++..... .. +..--..|..+.|+++|+++++-. =-+|+
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk 296 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVK 296 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeE
Confidence 888998 4567888889999999999854221 11 111224688899999999998764 36899
Q ss_pred EEeC-CCCeeeEEEeeecC------------ce---EEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 285 LWDL-GQQRCIHSYAVHTD------------SV---WALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 285 iwdl-~~~~~~~~l~~h~~------------~V---~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
+||+ ...+++.++..|.. .| ..++|+-++.+++||+....++++++..|
T Consensus 297 ~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 297 LWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999 45778888887752 22 35678888899999999999999996544
No 225
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=4.5e-12 Score=124.66 Aligned_cols=328 Identities=15% Similarity=0.195 Sum_probs=217.6
Q ss_pred CccceeecccccceeEEEEeCC-CeEEEEeCCCcEEEecCCCCCeeeeec-cccCCceEEEEEecCCCcEEEEEeCCCeE
Q 046871 74 GSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTL-RQHSDYVTCLAAAEKNSNIVASGGLGAEV 151 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l-~~h~~~V~~l~~~p~~~~~lasg~~dg~I 151 (764)
...+..++||.+.|++...-|. .-+++.+.|.+++||--...++.-..+ .....+++++.+. .+...|+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-SESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-ccceEEEEEEecceE
Confidence 4567778999999999888765 479999999999999643334433333 3345678999999 788999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 231 (764)
.-+.+...... ...+.....|...+..+-|+-...+
T Consensus 93 tefs~sedfnk--------------------------------------------m~~~r~~~~h~~~v~~~if~~~~e~ 128 (404)
T KOG1409|consen 93 TEFALSEDFNK--------------------------------------------MTFLKDYLAHQARVSAIVFSLTHEW 128 (404)
T ss_pred EEEEhhhhhhh--------------------------------------------cchhhhhhhhhcceeeEEecCCcee
Confidence 88877542100 1122335678899999999988899
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeeeEEEeeecCceEEEEE
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL--GQQRCIHSYAVHTDSVWALAS 309 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl--~~~~~~~~l~~h~~~V~~l~~ 309 (764)
+++.+.|..+.---.+.+..+..+.- ...-+++.+.-. +...|...|.|.+-.+ ..-..+.++.+|.+.+.+++|
T Consensus 129 V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W 205 (404)
T KOG1409|consen 129 VLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW 205 (404)
T ss_pred EEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence 99999999887666666655443221 111112222111 4556666666655544 345678889999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCC--CeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCcee---eec--
Q 046871 310 TPTFSHVYSGGRDLSLYLTDLAT--RESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKV---FQR-- 380 (764)
Q Consensus 310 spd~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~---~~~-- 380 (764)
.+....+++|..|..+.+||+.. +.......+.+.|..+...+-- +++++.||.|.+|+.+....... ...
T Consensus 206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~c 285 (404)
T KOG1409|consen 206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSC 285 (404)
T ss_pred cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchh
Confidence 99999999999999999999864 4455556677778777765554 89999999999999975322110 000
Q ss_pred ------------------------CC----cceecccc------ccccccccCCCC---CcccCCCCCC--ccc--cCCC
Q 046871 381 ------------------------GG----SFIAGNLS------FSRARVSLEGST---PVSSRFKEPN--FTI--PGIP 419 (764)
Q Consensus 381 ------------------------~~----~~~~~~~~------~s~~~~~~~~~~---~~~~~~~~~~--~~i--~g~~ 419 (764)
++ +..+...+ +.+....+++.. ..+.++..+. ..+ +.+.
T Consensus 286 Q~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~t 365 (404)
T KOG1409|consen 286 QKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKT 365 (404)
T ss_pred hhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccccc
Confidence 00 00000000 000000000000 0011222222 222 3467
Q ss_pred CceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 420 GIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 420 ~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
+|+.+.+-.+..+|+|++.|..|+|||+..
T Consensus 366 gItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 366 GITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ceeEEEhhhhccceeecCCceEEEEEechh
Confidence 899999999999999999999999999863
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.7e-11 Score=133.45 Aligned_cols=232 Identities=11% Similarity=0.016 Sum_probs=151.4
Q ss_pred cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe---CCCcEEEecCCCCCeeeeeccccCCceEEEEEecCC
Q 046871 63 TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS---SDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN 138 (764)
Q Consensus 63 ~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s---~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~ 138 (764)
.|.+||.+... .+.+..+...+.+..|+||| .|+..+ .+..|.+|++. .++.. .+....+.+...+|+ ++
T Consensus 180 ~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~-~l~~~~~~~~~~~~S-PD 253 (429)
T PRK03629 180 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVR-QVASFPRHNGAPAFS-PD 253 (429)
T ss_pred eEEEEcCCCCC---CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeE-EccCCCCCcCCeEEC-CC
Confidence 68888887532 34455567789999999998 565443 23568999974 34322 222223334568999 67
Q ss_pred CcEEEEE-eCCC--eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC
Q 046871 139 SNIVASG-GLGA--EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG 215 (764)
Q Consensus 139 ~~~lasg-~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 215 (764)
++.|+.. +.++ .|++||+.++.. ..+..
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~-------------------------------------------------~~lt~ 284 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQI-------------------------------------------------RQVTD 284 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCE-------------------------------------------------EEccC
Confidence 7766643 4454 588899876311 11222
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC---CcEEEEeCC
Q 046871 216 HKESVYALAMNDSGNLLVSGGTE-K--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD---SMIRLWDLG 289 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D---g~I~iwdl~ 289 (764)
+...+....|+|||+.|+..+.+ + .|.++|+.+++. ..+..+........|+|||++|+..+.+ ..|.+||+.
T Consensus 285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 23456788999999988877654 3 455557766644 3344344456678999999998876543 358899998
Q ss_pred CCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCc---EEEEeCCCCeEEEEeecCCCeEEEEeeC
Q 046871 290 QQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLS---LYLTDLATRESLLLCTGEHPILQLALHD 352 (764)
Q Consensus 290 ~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~---I~iwd~~~~~~~~~~~~~~~V~~l~~sp 352 (764)
+++.. .+.. ........|+|||++|+.++.++. +.++++..+.......+.+.+...+|+|
T Consensus 364 ~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 364 TGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 87643 3332 122346789999999998887764 6778886554444444566778888887
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3.3e-11 Score=133.32 Aligned_cols=213 Identities=12% Similarity=0.065 Sum_probs=143.7
Q ss_pred CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 105 TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG---AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 105 g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
.+|.+||. ++...+.+..+...+.+.+|+ ++++.|+..+.+ ..|++||+.++...
T Consensus 184 ~~l~i~D~--~g~~~~~lt~~~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~------------------- 241 (433)
T PRK04922 184 YALQVADS--DGYNPQTILRSAEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRE------------------- 241 (433)
T ss_pred EEEEEECC--CCCCceEeecCCCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEE-------------------
Confidence 35889996 344555666677889999999 678888776633 46999999764210
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeccC
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEK--VVRVWDPRTGSKTIKLRGH 258 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg--~I~iwd~~~~~~~~~l~~h 258 (764)
.+....+...+.+|+|+|+.|+ +.+.+| .|++||+.+++. ..+..+
T Consensus 242 ------------------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~ 290 (433)
T PRK04922 242 ------------------------------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNH 290 (433)
T ss_pred ------------------------------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccC
Confidence 1112233345789999999776 445555 699999988764 445556
Q ss_pred CcCeEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC---cEEEEeCCC
Q 046871 259 TDNIRSLLLDSTGRYCLSGSS-DSM--IRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL---SLYLTDLAT 332 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~-Dg~--I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg---~I~iwd~~~ 332 (764)
.......+|+|||++|+.++. +|. |+++|+.+++.. .+..+.......+|+|+|++|+..+.++ .|.+||+.+
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 555678899999999887764 444 777777666533 3333334455789999999998654433 699999988
Q ss_pred CeEEEEeecCCCeEEEEeeCCc--eEEEeC---CCcEEEeeCCCC
Q 046871 333 RESLLLCTGEHPILQLALHDDN--IWVATT---DSSVHRWPAEGR 372 (764)
Q Consensus 333 ~~~~~~~~~~~~V~~l~~spd~--l~~~s~---dg~I~iwd~~~~ 372 (764)
++..... .........|+||+ ++..+. .+.|.++++..+
T Consensus 370 g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 370 GSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8765433 33345567899999 444443 245778887654
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.3e-11 Score=123.50 Aligned_cols=244 Identities=15% Similarity=0.151 Sum_probs=182.1
Q ss_pred cccceeEEEEeCCC---eEEEEeCCCcEEEecCCCCCeeee------eccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 83 HVDWVNDAVLVGDN---TLVSCSSDTTLKTWNCSSDGTCIR------TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 83 h~~~V~~v~~s~d~---~l~s~s~Dg~V~vWd~~~~~~~~~------~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
....|..++|..++ .++.++.|..+....+.. ..+.. +.......|..++.. ...|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E-~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEE-FEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccC-Cccccccccccccccccccccchhhc---CCEEEEEecCCcEEE
Confidence 35678888888664 455555777777777533 32222 334456678887776 567888899999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLL 232 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l 232 (764)
|....+.... ..+..+ .....++.+.-++ +..++
T Consensus 130 ~~~k~~d~hs--------------------------------------------s~l~~l-a~g~g~~~~r~~~~~p~Iv 164 (412)
T KOG3881|consen 130 RHDKSGDLHS--------------------------------------------SKLIKL-ATGPGLYDVRQTDTDPYIV 164 (412)
T ss_pred EeccCCcccc--------------------------------------------ccceee-ecCCceeeeccCCCCCceE
Confidence 9987532110 000111 1124455555555 34566
Q ss_pred EEEeCC--CeEEEEeCCCCceeEEeccCC---------cCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC-eeeEEEe
Q 046871 233 VSGGTE--KVVRVWDPRTGSKTIKLRGHT---------DNIRSLLLDST--GRYCLSGSSDSMIRLWDLGQQ-RCIHSYA 298 (764)
Q Consensus 233 ~sgs~d--g~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spd--g~~l~sgs~Dg~I~iwdl~~~-~~~~~l~ 298 (764)
++|+.. ..+.+||+...+++.+-+.-. -.++++.|-+. ...|++++.-+.+|+||.+.+ +++..|.
T Consensus 165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence 779998 889999999887776544221 25678888887 788999999999999999865 5788888
Q ss_pred eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE-ee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCC
Q 046871 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL-CT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 299 ~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~ 374 (764)
.-..+++++...|+++++++|..-|.+..+|++.+..... +. ..+.|.++..+|.+ +++++-|..+||+|+.+.++
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 8889999999999999999999999999999999987765 44 37789999999997 88888999999999998665
Q ss_pred c
Q 046871 375 Q 375 (764)
Q Consensus 375 ~ 375 (764)
+
T Consensus 325 l 325 (412)
T KOG3881|consen 325 L 325 (412)
T ss_pred h
Confidence 4
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.3e-11 Score=130.50 Aligned_cols=202 Identities=9% Similarity=0.035 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE-eCCC--cEEEEe
Q 046871 214 KGHKESVYALAMNDSGNLLVSGG---TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG-SSDS--MIRLWD 287 (764)
Q Consensus 214 ~~~~~~V~~l~~sp~g~~l~sgs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg-s~Dg--~I~iwd 287 (764)
..+...+.+.+|+|||+.|+..+ .+..|.+||+.+++... +....+.+....|+|||+.|+.. +.+| .|++||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 34566789999999999988654 24579999998875432 22233345578999999988755 4444 599999
Q ss_pred CCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC-CC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCC-
Q 046871 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR-DL--SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTD- 361 (764)
Q Consensus 288 l~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~d- 361 (764)
+.+++..+ +..+...+....|+|||+.|+..+. ++ .|+++|+.+++...............|+||+ ++..+.+
T Consensus 274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 98876544 4444556788999999998876554 34 4555677777655444444456678999998 5554432
Q ss_pred --CcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCC
Q 046871 362 --SSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAA 439 (764)
Q Consensus 362 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~d 439 (764)
..|.+||+.+++.. .+... .......|+|||++|+..+.+
T Consensus 353 g~~~I~~~dl~~g~~~-~Lt~~-------------------------------------~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ-VLTDT-------------------------------------FLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CCceEEEEECCCCCeE-EeCCC-------------------------------------CCCCCceECCCCCEEEEEEcC
Confidence 35888888776532 11100 001134688999999999888
Q ss_pred Cc---EEEEEccccEEeeec
Q 046871 440 GS---VKLWEITRGVVVEDY 456 (764)
Q Consensus 440 G~---V~lWdi~tg~~i~~~ 456 (764)
+. +.+|++. |+..+.+
T Consensus 395 ~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 395 GMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred CCceEEEEEECC-CCCeEEC
Confidence 75 6677774 5555544
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.5e-11 Score=134.21 Aligned_cols=233 Identities=11% Similarity=0.015 Sum_probs=152.1
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC---CcEEEecCCCCCeeeeeccccCCceEEEEEecC
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD---TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D---g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~ 137 (764)
..|.+||... ...+.+..|...+.+..|+||+ .|+.++.+ ..|.+||+. .++. ..+..+.+...+.+|+ +
T Consensus 184 ~~l~i~D~~g---~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~-~g~~-~~l~~~~g~~~~~~~S-p 257 (433)
T PRK04922 184 YALQVADSDG---YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA-TGQR-ELVASFRGINGAPSFS-P 257 (433)
T ss_pred EEEEEECCCC---CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC-CCCE-EEeccCCCCccCceEC-C
Confidence 4688999864 3355566777889999999997 67766643 469999984 3433 2333344455678999 5
Q ss_pred CCcEE-EEEeCCC--eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc
Q 046871 138 NSNIV-ASGGLGA--EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK 214 (764)
Q Consensus 138 ~~~~l-asg~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 214 (764)
+++.+ ++.+.++ .|++||+.++.. ..+.
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-------------------------------------------------~~lt 288 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQL-------------------------------------------------TRLT 288 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCe-------------------------------------------------EECc
Confidence 66655 4555555 589999876421 1122
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCC---cEEEEeC
Q 046871 215 GHKESVYALAMNDSGNLLVSGGT-EK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS---MIRLWDL 288 (764)
Q Consensus 215 ~~~~~V~~l~~sp~g~~l~sgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg---~I~iwdl 288 (764)
.+.......+|+|||+.|+..+. +| .|.++|+.+++... +..+.......+|+|||++|+..+.++ .|.+||+
T Consensus 289 ~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 289 NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 23334457899999998887764 44 47777877765432 322334455789999999988765443 5999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCeEEEEeecCCCeEEEEeeC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD---LSLYLTDLATRESLLLCTGEHPILQLALHD 352 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~~l~~sp 352 (764)
.+++.. .+. +........|+|||++++..+.+ +.|+++++..+.......+.+.+...+|+|
T Consensus 368 ~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 368 STGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 877654 343 22345567999999988765543 468888886554433333445566677766
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.6e-11 Score=131.62 Aligned_cols=232 Identities=9% Similarity=0.001 Sum_probs=153.5
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC---CCcEEEecCCCCCeeeeeccccCCceEEEEEecC
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS---DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~---Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~ 137 (764)
..|.+||.+. ...+.+..|...+.+..|+||+ .|+..+. +..|.+||+. .+.. ..+..+.+.+.+.+|+ +
T Consensus 182 ~~l~~~d~dg---~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~-~~l~~~~g~~~~~~~S-P 255 (435)
T PRK05137 182 KRLAIMDQDG---ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQR-ELVGNFPGMTFAPRFS-P 255 (435)
T ss_pred eEEEEECCCC---CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcE-EEeecCCCcccCcEEC-C
Confidence 3788888864 3356677788899999999998 6666553 4679999984 3433 3444566677788999 5
Q ss_pred CCcEE-EEEeCCCe--EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc
Q 046871 138 NSNIV-ASGGLGAE--VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK 214 (764)
Q Consensus 138 ~~~~l-asg~~dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 214 (764)
+++.| ++.+.++. |.+||+.++.. ..+.
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-------------------------------------------------~~Lt 286 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-------------------------------------------------TRLT 286 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCce-------------------------------------------------EEcc
Confidence 66655 56666654 77778765311 1122
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC---CcEEEEeC
Q 046871 215 GHKESVYALAMNDSGNLLVSGGT-EK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD---SMIRLWDL 288 (764)
Q Consensus 215 ~~~~~V~~l~~sp~g~~l~sgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D---g~I~iwdl 288 (764)
.+........|+|||+.|+..+. +| .|.+||+..++. ..+..+...+....|+|||++|+..+.+ ..|.+||+
T Consensus 287 ~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 287 DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 33444567899999998887764 33 688889876654 3343345556778899999999876653 35888898
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC------CcEEEEeCCCCeEEEEeecCCCeEEEEeeC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD------LSLYLTDLATRESLLLCTGEHPILQLALHD 352 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~~~V~~l~~sp 352 (764)
..+. ...+. ....+..+.|+|||+.|+..+.+ ..++++|+..+... .+.....+...+|+|
T Consensus 366 ~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 366 DGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVPTPGDASDPAWSP 432 (435)
T ss_pred CCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-EccCCCCccCcccCC
Confidence 5543 33333 22346788999999998754432 35888888766553 333344455666665
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=7.7e-11 Score=130.54 Aligned_cols=158 Identities=13% Similarity=0.055 Sum_probs=115.9
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE-EEeCCCc--EEEE
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGGT---EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSM--IRLW 286 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-sgs~Dg~--I~iw 286 (764)
+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+|||+.|+ +.+.++. |++|
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM 275 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEE
Confidence 4556778999999999999887753 468999999888653 4445666778899999999875 5555554 7788
Q ss_pred eCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec-CCC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCC
Q 046871 287 DLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDL--SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 287 dl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~d 361 (764)
|+.+++. ..+..+........|+|||+.|+..+ .+| .|+++|+.++...........+....|+|++ |+....+
T Consensus 276 d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 276 DLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred ECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 9887765 44555666677899999999888655 333 6888898877665555555567778999999 5554432
Q ss_pred ---CcEEEeeCCCC
Q 046871 362 ---SSVHRWPAEGR 372 (764)
Q Consensus 362 ---g~I~iwd~~~~ 372 (764)
..|.+|++.++
T Consensus 355 ~~~~~i~~~d~~~~ 368 (435)
T PRK05137 355 GGQFSIGVMKPDGS 368 (435)
T ss_pred CCceEEEEEECCCC
Confidence 35777776544
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.9e-11 Score=132.32 Aligned_cols=234 Identities=9% Similarity=-0.038 Sum_probs=144.6
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC---CcEEEecCCCCCeeeeeccccCCceEEEEEecC
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD---TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D---g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~ 137 (764)
..|.+||.+. .....+..+...+.+.+|+||+ .|+..+.+ ..|.+||+. .++.. .+....+.+.+.+|+ +
T Consensus 176 ~~L~~~D~dG---~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~-~g~~~-~l~~~~g~~~~~~~S-P 249 (427)
T PRK02889 176 YQLQISDADG---QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA-TGRRR-VVANFKGSNSAPAWS-P 249 (427)
T ss_pred cEEEEECCCC---CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC-CCCEE-EeecCCCCccceEEC-C
Confidence 3566667643 3345566778889999999998 66665543 359999984 34332 233334456688999 6
Q ss_pred CCcEEE-EEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC
Q 046871 138 NSNIVA-SGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216 (764)
Q Consensus 138 ~~~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 216 (764)
+++.|+ +.+.++...+|.++... .....+..+
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~-----------------------------------------------~~~~~lt~~ 282 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADG-----------------------------------------------SGLRRLTQS 282 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCC-----------------------------------------------CCcEECCCC
Confidence 676665 66778877777654210 001112223
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-CCeEEEE--eCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCC
Q 046871 217 KESVYALAMNDSGNLLVSGGT-EKVVRVW--DPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS---MIRLWDLGQ 290 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~-dg~I~iw--d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg---~I~iwdl~~ 290 (764)
........|+|||+.|+..+. ++...+| +..+++.. .+..+........|+|||++|+..+.++ .|.+||+.+
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 334556789999998886654 4555555 44444432 2222233345678999999998777654 599999988
Q ss_pred CeeeEEEeeecCceEEEEEcCCCCEEEEecCCC---cEEEEeCCCCeEEEEee-cCCCeEEEEeeC
Q 046871 291 QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL---SLYLTDLATRESLLLCT-GEHPILQLALHD 352 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg---~I~iwd~~~~~~~~~~~-~~~~V~~l~~sp 352 (764)
++... +.. ........|+||+++|+.++.++ .+.+.++. +.....+. ..+.+...+|+|
T Consensus 362 g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 362 GQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 76543 332 23346789999999988766443 35566664 44333333 345566667765
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=1e-11 Score=128.65 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=128.6
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc--cccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCC--------
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES--HVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDG-------- 116 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~--h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~-------- 116 (764)
.+.+--|+.|-.-|.|.+.|....+...+..... ....|+|+.|-|.+ .++.+-.+|.++++|.....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4566677788888999988876521111111111 24789999999763 78888889999999742110
Q ss_pred -----e--------------eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 117 -----T--------------CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 117 -----~--------------~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
. ++..+.--.+.|..++|+ +|+.+||+.+.||.++|+|..+.+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~e----------------- 323 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS-PDGKYLATVSQDGFLRIFDFDTQE----------------- 323 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEc-CCCceEEEEecCceEEEeeccHHH-----------------
Confidence 0 111111123468889999 699999999999999999998732
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG 257 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 257 (764)
....++..-+...|++|+|||++|++|++|..|.||.+..++.+..-.+
T Consensus 324 -------------------------------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 324 -------------------------------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred -------------------------------HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 2222445567789999999999999999999999999999999999999
Q ss_pred CCcCeEEEEEc
Q 046871 258 HTDNIRSLLLD 268 (764)
Q Consensus 258 h~~~V~~l~~s 268 (764)
|.+.|..++|+
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999998
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=7.6e-11 Score=115.24 Aligned_cols=300 Identities=13% Similarity=0.110 Sum_probs=192.8
Q ss_pred CCeeEEEeecccccCCCcEEEE-EeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFT-GSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~s-gs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~ 112 (764)
..|.-|.| +.|.-+++. ...|+.|.+|++.. .+....+....+++..++|+||| .|.+...|-.|.||.+
T Consensus 49 dki~yieW-----~ads~~ilC~~yk~~~vqvwsl~Q--pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 49 DKIVYIEW-----KADSCHILCVAYKDPKVQVWSLVQ--PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred HHhhheee-----eccceeeeeeeeccceEEEEEeec--ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence 34666666 456655554 57889999999988 55566677778899999999998 5677888999999998
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC---CCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAAL---APSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
.. .+. ..+......+..++|+ +++++.+.++.-.......+.... ..... .-..+....+
T Consensus 122 ~t-~~~-~~~~~pK~~~kg~~f~-~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f--------------~~dT~Dltgi 184 (447)
T KOG4497|consen 122 NT-QKG-YLLPHPKTNVKGYAFH-PDGQFCAILSRRDCKDYVQISSCKAWILLKEF--------------KLDTIDLTGI 184 (447)
T ss_pred cc-cee-EEecccccCceeEEEC-CCCceeeeeecccHHHHHHHHhhHHHHHHHhc--------------CCCcccccCc
Confidence 33 332 3333344567899999 789988887653211111111000 00000 0011111111
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----------------
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI---------------- 253 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~---------------- 253 (764)
.=...++-+.+|+.....+.. ...-.-.+..++|+|.+++|+.|+.|+.+|+.+--+.+...
T Consensus 185 eWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 185 EWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred eECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 111222233334332211111 11223568899999999999999999999986632211111
Q ss_pred --------------------------------------------Eec------cCCcCeEEEEEcCCCCEEEEEeC--CC
Q 046871 254 --------------------------------------------KLR------GHTDNIRSLLLDSTGRYCLSGSS--DS 281 (764)
Q Consensus 254 --------------------------------------------~l~------~h~~~V~~l~~spdg~~l~sgs~--Dg 281 (764)
.++ ...-.+.-++|++|..++++-.. -+
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pn 342 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPN 342 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCc
Confidence 011 01124667899999999888754 25
Q ss_pred cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe
Q 046871 282 MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT 359 (764)
Q Consensus 282 ~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s 359 (764)
.+.+||++..+.-..+. ...+|....|+|....|+.+.....+++|.......+..-..+-.|..+.|+-+| ++..+
T Consensus 343 alW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred eEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEc
Confidence 69999998766544443 5668999999999988888777778999999887777766667789999999888 66666
Q ss_pred CCC
Q 046871 360 TDS 362 (764)
Q Consensus 360 ~dg 362 (764)
.|.
T Consensus 422 kDa 424 (447)
T KOG4497|consen 422 KDA 424 (447)
T ss_pred CCc
Confidence 664
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=6.9e-10 Score=108.59 Aligned_cols=155 Identities=11% Similarity=0.083 Sum_probs=118.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEeccCCcCeEEEEEcC--CCCEEEE-EeCCCcEEEEeCCCC
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPR-TGSKTIKLRGHTDNIRSLLLDS--TGRYCLS-GSSDSMIRLWDLGQQ 291 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~sp--dg~~l~s-gs~Dg~I~iwdl~~~ 291 (764)
...+|.++.+.++ .|++. .++.|.+|... +.+.++.+.....+---+++.| +...|+. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 4678999999854 45555 45789999987 4566666654332222233334 3333443 345689999999766
Q ss_pred ee--eEEEeeecCceEEEEEcCCCCEEEEecCCCc-EEEEeCCCCeEEEEeec---CCCeEEEEeeCCc--eEEEeCCCc
Q 046871 292 RC--IHSYAVHTDSVWALASTPTFSHVYSGGRDLS-LYLTDLATRESLLLCTG---EHPILQLALHDDN--IWVATTDSS 363 (764)
Q Consensus 292 ~~--~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~--l~~~s~dg~ 363 (764)
+. ...+.+|...|.|++.+.+|..+||+|..|+ |||||..+|..+..+.. ...|.+++|+|+. |++++..|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 55 4778899999999999999999999999997 79999999999988874 5679999999999 888888899
Q ss_pred EEEeeCCCCC
Q 046871 364 VHRWPAEGRN 373 (764)
Q Consensus 364 I~iwd~~~~~ 373 (764)
++|+.+....
T Consensus 250 lHiF~l~~~~ 259 (346)
T KOG2111|consen 250 LHIFSLRDTE 259 (346)
T ss_pred EEEEEeecCC
Confidence 9999997654
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=4.3e-11 Score=133.62 Aligned_cols=274 Identities=21% Similarity=0.305 Sum_probs=186.3
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCcccee------ecccccceeEEEEeCCCeEEEEeCCCcE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSAT------FESHVDWVNDAVLVGDNTLVSCSSDTTL 107 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~------l~~h~~~V~~v~~s~d~~l~s~s~Dg~V 107 (764)
|-+++++.++. + +||..|.. -.|.+||+..+ ..+.. +..| .+....-.-.++++++..-+.+
T Consensus 6 ~~~~l~~~~~~----~---~~llag~g-p~i~~yd~~s~--~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v 73 (967)
T KOG0974|consen 6 SLGPLNLPQLV----S---DYLLAGSG-PEILVYDLSSG--CLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEV 73 (967)
T ss_pred ccccccchhhc----c---ceeeecCC-CceEEeeCCch--hHhhhhhhhcccccc--cccccceeccceEEEEEeecce
Confidence 55567777773 2 67777654 47999999873 22222 2334 0111111112356666655555
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
.+=+. ...... .-.+.|....+. .+...++.+..+..+.+||........+.....
T Consensus 74 ~~~~~--~~~~~~---~~s~wi~g~~l~-~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e------------------ 129 (967)
T KOG0974|consen 74 YVKEA--SNQIIE---RFSDWIFGAKLF-EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE------------------ 129 (967)
T ss_pred eecch--hhhhhh---hccccccccchh-hhcceEEEEEcCceEEEEecccCceehhcCCCc------------------
Confidence 44332 111222 223334444444 557778888888899999987643222111000
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 267 (764)
...-....-+-++++.-++++|+.-+.|.+|+.........+.+|.+.|.++.+
T Consensus 130 --------------------------r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~ 183 (967)
T KOG0974|consen 130 --------------------------RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVT 183 (967)
T ss_pred --------------------------eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEE
Confidence 000011122334556678999999999999999844444468999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeE-EEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-c-CCC
Q 046871 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIH-SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-G-EHP 344 (764)
Q Consensus 268 spdg~~l~sgs~Dg~I~iwdl~~~~~~~-~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~-~~~ 344 (764)
+.||+++++.|.|.++|+|++.+++... +.-+|+..||.+.|+|+ .++|++.|.+.++|+....+.. .+. | ...
T Consensus 184 s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~ 260 (967)
T KOG0974|consen 184 SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKG 260 (967)
T ss_pred ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcc
Confidence 9999999999999999999999988776 66689999999999998 8999999999999976544333 333 3 567
Q ss_pred eEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 345 ILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 345 V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
|..++.+++. +++++.|+.+++|++...
T Consensus 261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999988 888999999999998753
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=6.2e-11 Score=115.12 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=108.4
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CceeEEecc-CCcCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 046871 221 YALAMNDSGNLLVSGGT----------EKVVRVWDPRT-GSKTIKLRG-HTDNIRSLLLDSTGRYCLSG--SSDSMIRLW 286 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~----------dg~I~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~sg--s~Dg~I~iw 286 (764)
..+.|+++|++|+.-.. -+...+|.++. ......+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788999987775433 12344444422 223333322 34579999999999987544 467899999
Q ss_pred eCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeC-
Q 046871 287 DLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD---LSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATT- 360 (764)
Q Consensus 287 dl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~- 360 (764)
|++ ++.+..+ +...++.+.|+|+|++|++++.+ |.|.+||+++.+.+....+.. ++.++|+|+| +++++.
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEec
Confidence 996 6666665 45678899999999999988754 679999999888887776654 7899999999 666653
Q ss_pred -----CCcEEEeeCCCC
Q 046871 361 -----DSSVHRWPAEGR 372 (764)
Q Consensus 361 -----dg~I~iwd~~~~ 372 (764)
|+.++||+....
T Consensus 165 ~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQGR 181 (194)
T ss_pred cceeccccEEEEEecCe
Confidence 788999998643
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.4e-11 Score=130.10 Aligned_cols=221 Identities=19% Similarity=0.105 Sum_probs=143.8
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCC---CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEE-EEeCCCcE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRD---GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLV-SCSSDTTL 107 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~-s~s~Dg~V 107 (764)
.|...+.+.+| ||||+.|+..+.+ ..|.+||+.+++.. .+....+.+....|+||+ .|+ +.+.++..
T Consensus 193 ~~~~~v~~p~w-----SPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 193 SSPEPIISPAW-----SPDGTKLAYVSFESKKPVVYVHDLATGRRR---VVANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred cCCCCcccceE-----cCCCCEEEEEEccCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 46677888888 8999999877643 45999999875422 233334456688999997 554 56778887
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
.||.+...+.....+..+........|+ ++++.|+..+ .++...+|.+....
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~~~~~-------------------------- 317 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRMPASG-------------------------- 317 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEEECCC--------------------------
Confidence 7776543444455565566666778899 6777666444 45666666654210
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeccCCcCeE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK---VVRVWDPRTGSKTIKLRGHTDNIR 263 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~V~ 263 (764)
+.. ..+..........+|+|+|++|+..+.++ .|.+||+.+++... +.. .....
T Consensus 318 --------------------g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~ 374 (427)
T PRK02889 318 --------------------GAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDE 374 (427)
T ss_pred --------------------Cce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCcc
Confidence 000 00011112234578999999998776554 69999998876543 332 23346
Q ss_pred EEEEcCCCCEEEEEeCCC---cEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 264 SLLLDSTGRYCLSGSSDS---MIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg---~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
...|+|||++|+.++.++ .+.+.++ +++....+..+.+.+...+|+|-
T Consensus 375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 789999999988777554 3556666 46666666666677777788764
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=1.4e-10 Score=112.64 Aligned_cols=115 Identities=16% Similarity=0.309 Sum_probs=93.7
Q ss_pred CCcEEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCC
Q 046871 217 KESVYALAMNDSGNLLVS--GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS---DSMIRLWDLGQQ 291 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~s--gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~---Dg~I~iwdl~~~ 291 (764)
.++|.+++|+|+|+.|++ |..++.|.+||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 456999999999998765 4467799999996 67777764 567789999999999999875 467999999998
Q ss_pred eeeEEEeeecCceEEEEEcCCCCEEEEecC------CCcEEEEeCCCCeEEE
Q 046871 292 RCIHSYAVHTDSVWALASTPTFSHVYSGGR------DLSLYLTDLATRESLL 337 (764)
Q Consensus 292 ~~~~~l~~h~~~V~~l~~spd~~~l~sgs~------Dg~I~iwd~~~~~~~~ 337 (764)
+.+.++. | ..+..++|+|+|++|+++.. |+.++||+.. |+.+.
T Consensus 136 ~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 136 KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 8888775 3 34789999999999998764 7889999985 54443
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=1.4e-10 Score=114.23 Aligned_cols=243 Identities=18% Similarity=0.217 Sum_probs=173.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceee-cccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
.||.+.|+..... |-..-+++.+.|.++|||--.+. ++.-..+ .....+++++.+.++. .|+.+-..|++.-
T Consensus 21 eG~~d~vn~~~l~-----~~e~gv~~~s~drtvrv~lkrds-~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 21 EGSQDDVNAAILI-----PKEEGVISVSEDRTVRVWLKRDS-GQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred cCchhhhhhheec-----cCCCCeEEccccceeeeEEeccc-cccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 5999999998874 56678999999999999954321 2222222 2346778899999886 7888888899988
Q ss_pred ecCCCCC---eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 110 WNCSSDG---TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 110 Wd~~~~~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+.+..+- ...+....|...+..+-|+ ....++++.+.|..+.---.+.+......
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y--------------------- 152 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGY--------------------- 152 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeeccCCcccce---------------------
Confidence 8764332 3455667899999999999 67889999999986554333332111000
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe--CCCCceeEEeccCCcCeEE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWD--PRTGSKTIKLRGHTDNIRS 264 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd--~~~~~~~~~l~~h~~~V~~ 264 (764)
. +. ...+++.+. -.+...|...|.|..-. ...-..+.++.+|.+.+.+
T Consensus 153 ----------------------~---~~---~~~t~~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~ 202 (404)
T KOG1409|consen 153 ----------------------N---FE---TPASALQFD--ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTC 202 (404)
T ss_pred ----------------------E---ee---ccCCCCcee--eEEEEecccccceEEEEEeecCCceEEEEcCcccceEE
Confidence 0 00 000001110 01344455555554433 3445678899999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCe-eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQR-CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
++|.+....|++|..|..+.+||+.-.+ ....+.+|.+.|..+...+--+.+++++.||.|.+|++..
T Consensus 203 l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999999999999996544 3466788999999999888888999999999999999753
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=9.4e-11 Score=130.98 Aligned_cols=221 Identities=18% Similarity=0.340 Sum_probs=164.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEEEEeCCCcEEEecCCCCCeeeeeccccCCc---
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY--- 128 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~--- 128 (764)
.+++++..-+-+..=+... ..+..-.+||....+.-+ ..++.+..+..+-+||. ..+.....+......
T Consensus 62 ~~~v~~~~~~~v~~~~~~~------~~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~-~~~~~~~~i~~~er~~l~ 134 (967)
T KOG0974|consen 62 GKIVTCAKSDEVYVKEASN------QIIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDS-KNSSVLSKIQSDERCTLY 134 (967)
T ss_pred ceEEEEEeecceeecchhh------hhhhhccccccccchhhhcceEEEEEcCceEEEEec-ccCceehhcCCCceEEEE
Confidence 4555665544444333321 112223455655555544 47888899999999996 434444443322211
Q ss_pred -eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 129 -VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 129 -V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
..-+.++ .+.-++++|+.-+.|.+|+.....
T Consensus 135 ~~~~~g~s-~~~~~i~~gsv~~~iivW~~~~dn----------------------------------------------- 166 (967)
T KOG0974|consen 135 SSLIIGDS-AEELYIASGSVFGEIIVWKPHEDN----------------------------------------------- 166 (967)
T ss_pred eEEEEecc-CcEEEEEeccccccEEEEeccccC-----------------------------------------------
Confidence 1112234 567789999999999999986310
Q ss_pred ccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 208 YVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI-KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
....+.+|.+.|.++.++-||+++++.+.|..+|+|++.+.+... ..-+|+..|..++|.|+ .+++++.|.+.++|
T Consensus 167 -~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW 243 (967)
T KOG0974|consen 167 -KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVW 243 (967)
T ss_pred -CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEE
Confidence 111478999999999999999999999999999999999998776 67789999999999988 99999999999999
Q ss_pred eCCCCeeeEEEeeecC-ceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 287 DLGQQRCIHSYAVHTD-SVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 287 dl~~~~~~~~l~~h~~-~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
+. .+..+.++..|.. .|+.++..++...++|++.|+.+++|++..
T Consensus 244 ~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 76 4566668888875 599999999999999999999999999753
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=9.4e-11 Score=123.73 Aligned_cols=214 Identities=16% Similarity=0.233 Sum_probs=158.0
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCc
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY 128 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~ 128 (764)
+|...|+|....||.+||||..+++ .... |.| .+..+..++--.|.+..+..+.+..... .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~--~~~e------------~~p---~~~~s~t~~~~~w~L~~~~s~~k~~~~~--~ 62 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQ--LQQE------------FAP---IASLSGTCTYTKWGLSADYSPMKWLSLE--K 62 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCce--eeee------------ecc---chhccCcceeEEEEEEeccchHHHHhHH--H
Confidence 4667899999999999999998733 2222 222 2233344455566643333333222111 0
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
+. ..+ .+...++-|...|.|.+|++..+....
T Consensus 63 ~~--~~s-~~t~~lvlgt~~g~v~~ys~~~g~it~--------------------------------------------- 94 (541)
T KOG4547|consen 63 AK--KAS-LDTSMLVLGTPQGSVLLYSVAGGEITA--------------------------------------------- 94 (541)
T ss_pred Hh--hcc-CCceEEEeecCCccEEEEEecCCeEEE---------------------------------------------
Confidence 11 112 456678888889999999987642211
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
......|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.++.....+.+++++|||+.+++++ +.|++||+
T Consensus 95 -~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~ 171 (541)
T KOG4547|consen 95 -KLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDI 171 (541)
T ss_pred -EEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEc
Confidence 112357899999999999889999999999999999999999999999999999999999999999986 68999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCC-----CCEEEEe-cCCCcEEEEeCCC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPT-----FSHVYSG-GRDLSLYLTDLAT 332 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd-----~~~l~sg-s~Dg~I~iwd~~~ 332 (764)
++++.+.+|.+|.++|.++.|.-+ |.++.++ ..+..+.+|-+..
T Consensus 172 ~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 172 ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999999999999765 6666644 4455677776543
No 244
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=1.5e-08 Score=110.29 Aligned_cols=273 Identities=11% Similarity=0.053 Sum_probs=168.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceE
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVT 130 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~ 130 (764)
.+..+++++.+|.|..+|..+ ++.+-.+............ .++.++.++.++.+..+|. .+++.+-..... +.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~-~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET--GKRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDA-EDGKELWRAKLS-SEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC--CcEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEEC-CCCcEeeeeccC-ceee
Confidence 367889999999999999988 4444443332221122222 3467888889999999996 456655443322 2222
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccc
Q 046871 131 CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVP 210 (764)
Q Consensus 131 ~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 210 (764)
+.... .+..++.++.++.|..||..++...-+... ... .
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~--------------------------------------~~~-~ 177 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR--------------------------------------VTP-A 177 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc--------------------------------------CCC-c
Confidence 21111 245677778899999999987643211100 000 0
Q ss_pred eeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc----C---eEEEEEcC--CCCEEEEEeCCC
Q 046871 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD----N---IRSLLLDS--TGRYCLSGSSDS 281 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~----~---V~~l~~sp--dg~~l~sgs~Dg 281 (764)
........+ ... +..++.+..++.+..+|.++|+.+........ . ...+.-+| .+..+++++.+|
T Consensus 178 ~~~~~~~sp----~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g 251 (377)
T TIGR03300 178 LTLRGSASP----VIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG 251 (377)
T ss_pred eeecCCCCC----EEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCC
Confidence 000000111 111 24677888889999999999987765431100 0 00010111 356788888999
Q ss_pred cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCceEEEe
Q 046871 282 MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG--EHPILQLALHDDNIWVAT 359 (764)
Q Consensus 282 ~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~l~~~s 359 (764)
.++.||..+++.+...... ...... .++..++.++.||.|+.+|..+++.+..... ...........+.+++++
T Consensus 252 ~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~ 327 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGD 327 (377)
T ss_pred EEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEe
Confidence 9999999999877666521 112222 2456888888999999999999987765532 222333344445599999
Q ss_pred CCCcEEEeeCCCCCCceeee
Q 046871 360 TDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 360 ~dg~I~iwd~~~~~~~~~~~ 379 (764)
.+|.|+++|..+++.+..++
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCEEEEEECCCCCEEEEEE
Confidence 99999999999988776655
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=2.1e-09 Score=119.03 Aligned_cols=213 Identities=10% Similarity=0.011 Sum_probs=137.9
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC---CcEEEecCCCCCeeeeeccccCCceEEEEEecC
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD---TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D---g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~ 137 (764)
..|.++|... .....+..+...+....|+||+ +|+.++.+ ..|++||+.. +.. ..+..+...+.+++|+ +
T Consensus 170 ~~l~~~d~~g---~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~~~~~~~~~~~s-p 243 (417)
T TIGR02800 170 YELQVADYDG---ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVASFPGMNGAPAFS-P 243 (417)
T ss_pred ceEEEEcCCC---CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeecCCCCccceEEC-C
Confidence 3577888764 2245566677778899999998 66655543 4799999743 332 2233455566778999 5
Q ss_pred CCcEEE-EEeCCC--eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc
Q 046871 138 NSNIVA-SGGLGA--EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK 214 (764)
Q Consensus 138 ~~~~la-sg~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 214 (764)
+++.|+ +.+.++ .|++||+.++.. ..+.
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~-------------------------------------------------~~l~ 274 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQL-------------------------------------------------TRLT 274 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCE-------------------------------------------------EECC
Confidence 666554 555444 588888875311 0111
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCC---cEEEEeC
Q 046871 215 GHKESVYALAMNDSGNLLVSGGTE-K--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS---MIRLWDL 288 (764)
Q Consensus 215 ~~~~~V~~l~~sp~g~~l~sgs~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg---~I~iwdl 288 (764)
.+........|+|+|+.|+..+.. + .|.++|+.+++. ..+..+...+....|+|+|++++.++.++ .|.+||+
T Consensus 275 ~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 275 NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 222233456899999988766543 3 688889877654 34444556677889999999999888776 7999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC---cEEEEeCCC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL---SLYLTDLAT 332 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg---~I~iwd~~~ 332 (764)
.++... .+... .......|+|++++|+..+.++ .+++.+...
T Consensus 354 ~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 354 DGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 875442 23222 2334568999999888766543 355555443
No 246
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=2.2e-08 Score=118.59 Aligned_cols=341 Identities=10% Similarity=0.076 Sum_probs=200.8
Q ss_pred cccceeEEEEeCCC-eEEEEeCCCcEEEe----cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 046871 83 HVDWVNDAVLVGDN-TLVSCSSDTTLKTW----NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157 (764)
Q Consensus 83 h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW----d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~ 157 (764)
..+.|.++.|.++. .++.+..+|.|.+. +. ....+.....-...|.+++|+ ||..+|+..+.++++.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~--~~~~~E~VG~vd~GI~a~~WS-PD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP--DEDEIEIVGSVDSGILAASWS-PDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC--CCceeEEEEEEcCcEEEEEEC-CCcCEEEEEeCCCEEEEEecc
Confidence 35679999999885 78999999999998 53 334444555567899999999 789999999999988887532
Q ss_pred CCCCCCCCC-CC--CcC--CcCccccCCCCCCcccceeecCCCCcccc---cccCCCCccceeccCCCCcEEEEEEcCCC
Q 046871 158 AALAPSKSG-DA--MED--DCSTGINGSGNSLPVTSLRTIGSSNSISA---HTSQSQGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 158 ~~~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
= ....... .. ... ...-++..... ..-++.++... .+..........+. ..+.-..|+|-.||
T Consensus 151 f-d~i~E~~l~~~~~~~~~~VsVGWGkKeT-------QF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 151 F-DPISEVPLDSDDFGESKHVSVGWGKKET-------QFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG 221 (928)
T ss_pred c-eEEEEeecCccccCCCceeeeccCcccC-------ccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC
Confidence 1 1110000 00 000 00000000000 00000000000 00000000001122 44566789999999
Q ss_pred CEEEEEeC------CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeeEEEe--
Q 046871 230 NLLVSGGT------EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS---DSMIRLWDLGQQRCIHSYA-- 298 (764)
Q Consensus 230 ~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~---Dg~I~iwdl~~~~~~~~l~-- 298 (764)
.++|+.+- -..+|||+- .|.....-..-.+--.+++|.|.|++|++.-. ...|.+|.- +|-.-..|.
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~ 299 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLR 299 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence 99998764 257999995 47655554444444567899999999998764 345777764 343333333
Q ss_pred --eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe----EEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeC
Q 046871 299 --VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE----SLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPA 369 (764)
Q Consensus 299 --~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~ 369 (764)
.....|..|.|++|+..|+..-.|. |.+|...+.. ....+.....+..+.|+|.. +.+.+.++.+..++.
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 3456799999999999999877555 9999988754 22223334456669999977 778888787766554
Q ss_pred C----CCCCceeeecCCcceeccccccccccccCCCCCcccCC-------CCCCccccCCCCceEeEEecCCcEEEEeeC
Q 046871 370 E----GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRF-------KEPNFTIPGIPGIVQHEILNNRRHVLTKDA 438 (764)
Q Consensus 370 ~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-------~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~ 438 (764)
. .+... ..+....+ ...+|....-+-. .-....+.-...|..++|++++..+++-..
T Consensus 379 ~~~v~~s~~~---~~~D~g~v---------aVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~ 446 (928)
T PF04762_consen 379 AWDVSRSPGS---SPNDNGTV---------AVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS 446 (928)
T ss_pred EEEEEecCCC---CccCceEE---------EEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC
Confidence 2 11100 00000000 0112211000000 001123334567999999999988999999
Q ss_pred CCcEEEEEcccc
Q 046871 439 AGSVKLWEITRG 450 (764)
Q Consensus 439 dG~V~lWdi~tg 450 (764)
||.|.+|.....
T Consensus 447 d~~l~~~~~~~~ 458 (928)
T PF04762_consen 447 DGSLSIYEWDLK 458 (928)
T ss_pred CCCEEEEEecCC
Confidence 999999996544
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.5e-09 Score=113.86 Aligned_cols=294 Identities=14% Similarity=0.128 Sum_probs=177.9
Q ss_pred ccCCCcEEEEE-----eCC-----CcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe
Q 046871 48 VSNGVDYLFTG-----SRD-----GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT 117 (764)
Q Consensus 48 ~S~d~~~L~sg-----s~D-----g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~ 117 (764)
|||-|.+|.|= ..+ -.+.+|++++ ......+......-++..|+.|..|+.--..+.+++|++.....
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~ 158 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKT 158 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeecc--ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccc
Confidence 38889988762 112 3477999988 33333333222222478899887565555567899999744333
Q ss_pred eeeeccccCCceEEEEEecC-CCcEEEE-----EeCCCeEEEEeCCCCCCCCCCCC---CCcCCcCccccCCCCCCcccc
Q 046871 118 CIRTLRQHSDYVTCLAAAEK-NSNIVAS-----GGLGAEVFIWDIEAALAPSKSGD---AMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 118 ~~~~l~~h~~~V~~l~~~p~-~~~~las-----g~~dg~I~iwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 188 (764)
..+. -|...|..+.++|. ....+|+ .|.-+.|++|............. ...+.....+...+..+-+-.
T Consensus 159 ~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLa 236 (566)
T KOG2315|consen 159 IQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLA 236 (566)
T ss_pred eeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEE
Confidence 3333 36778899999964 3445543 34556899998873211111100 001111111111111110000
Q ss_pred eeecC-------CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceeEEeccCC
Q 046871 189 LRTIG-------SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS--GGTEKVVRVWDPRTGSKTIKLRGHT 259 (764)
Q Consensus 189 l~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s--gs~dg~I~iwd~~~~~~~~~l~~h~ 259 (764)
...+. ....+.+...+ +..........++|+++.|+++++.+++ |-.-..+.|+|++ +..+..+. .
T Consensus 237 stdVDktn~SYYGEq~Lyll~t~--g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--e 311 (566)
T KOG2315|consen 237 STDVDKTNASYYGEQTLYLLATQ--GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--E 311 (566)
T ss_pred EEeecCCCccccccceEEEEEec--CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--C
Confidence 00000 11122222222 2222333345789999999999976654 5667789999985 66776664 5
Q ss_pred cCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC------CCcEEEEeC
Q 046871 260 DNIRSLLLDSTGRYCLSGSS---DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR------DLSLYLTDL 330 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~---Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~------Dg~I~iwd~ 330 (764)
++-+++-|+|.|++|+.++. -|.|-+||+.+.+++..+.... -+-..|+|||++|+|+.. |+.++||+.
T Consensus 312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 67789999999999887775 4789999999999988887544 345789999999998875 788999998
Q ss_pred CCCeEEEEeecCCCeEEEEeeCC
Q 046871 331 ATRESLLLCTGEHPILQLALHDD 353 (764)
Q Consensus 331 ~~~~~~~~~~~~~~V~~l~~spd 353 (764)
. |..+...........+.|-|-
T Consensus 390 t-G~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 390 T-GSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred c-CceeehhhhhHhHhheeeeec
Confidence 5 444433333324666777653
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.22 E-value=7.9e-08 Score=102.95 Aligned_cols=280 Identities=14% Similarity=0.205 Sum_probs=169.9
Q ss_pred EEEEeCC----CcEEEEeCCCCCCcc--ceeecccccceeEEEEeCCC-eEEEEeC----CCcEEEecCCCC-Cee--ee
Q 046871 55 LFTGSRD----GTLKRWSLADDVGSC--SATFESHVDWVNDAVLVGDN-TLVSCSS----DTTLKTWNCSSD-GTC--IR 120 (764)
Q Consensus 55 L~sgs~D----g~I~iWd~~~~~~~~--~~~l~~h~~~V~~v~~s~d~-~l~s~s~----Dg~V~vWd~~~~-~~~--~~ 120 (764)
++.|+.. +.|.+|+++...++. +..+ .-......+++++++ +|.++.. ++.|..|++..+ +.. +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566665 789999884433332 2222 234455678899886 6666665 578999987554 333 22
Q ss_pred eccccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccc
Q 046871 121 TLRQHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSIS 199 (764)
Q Consensus 121 ~l~~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 199 (764)
...........++++ +++.+|+++. .+|.|.++++...........
T Consensus 81 ~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-------------------------------- 127 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-------------------------------- 127 (345)
T ss_dssp EEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEE--------------------------------
T ss_pred eeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeee--------------------------------
Confidence 333234455678888 6777777776 589999999986311100000
Q ss_pred ccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc--ee--EEec-cCCcCeEEEEEcCCCCE
Q 046871 200 AHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-EKVVRVWDPRTGS--KT--IKLR-GHTDNIRSLLLDSTGRY 273 (764)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spdg~~ 273 (764)
.+... +.-............++.++|+|+++++... ...|++|++.... .. ..+. .....-+.++|+|++++
T Consensus 128 ~~~~~--g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~ 205 (345)
T PF10282_consen 128 TVRHE--GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY 205 (345)
T ss_dssp EEESE--EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE
T ss_pred ecccC--CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE
Confidence 00000 0000001122445789999999998887643 3479999987654 21 1222 23456799999999998
Q ss_pred EEEEe-CCCcEEEEeCC--CCe--eeEEEeee------cCceEEEEEcCCCCEEEEec-CCCcEEEEeCC--CCeE--EE
Q 046871 274 CLSGS-SDSMIRLWDLG--QQR--CIHSYAVH------TDSVWALASTPTFSHVYSGG-RDLSLYLTDLA--TRES--LL 337 (764)
Q Consensus 274 l~sgs-~Dg~I~iwdl~--~~~--~~~~l~~h------~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~--~~~~--~~ 337 (764)
+++.. .+++|.++++. .+. .++++... ......|+++|||++|+++. .++.|.+|++. ++.. +.
T Consensus 206 ~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 206 AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 76654 57789999987 443 23333211 12578899999999998765 46789999994 3333 23
Q ss_pred Eeec-CCCeEEEEeeCCc--eEEEe-CCCcEEEeeCC
Q 046871 338 LCTG-EHPILQLALHDDN--IWVAT-TDSSVHRWPAE 370 (764)
Q Consensus 338 ~~~~-~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~ 370 (764)
.+.. ......++++|++ |+++. .++.|.+|+++
T Consensus 286 ~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 286 TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3333 4457899999999 67666 46789999774
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=5.6e-11 Score=138.32 Aligned_cols=197 Identities=19% Similarity=0.344 Sum_probs=156.3
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~ 112 (764)
|-..|.++.- +|...+.+||+.||.|++|....+...+.....+. ..|+.+.|+.+| .+..+..||.+.+|..
T Consensus 2207 ~v~~v~r~~s-----Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTS-----HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecC-----CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeeccc
Confidence 4556777776 56678899999999999999987443333333344 889999999886 8899999999999996
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEe---CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG---LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~---~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
..+.....+.|......+.|. +..+++++ .++.+.+||..-.
T Consensus 2281 --~pk~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~------------------------------ 2325 (2439)
T KOG1064|consen 2281 --SPKPYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLP------------------------------ 2325 (2439)
T ss_pred --CCcceeccccCCccccceeee---ehhhhccccCCCCCcccchhcccC------------------------------
Confidence 366677788899999999998 36777775 4678999997532
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
...-.....|.+.++++++.|..+.|++|+.+|.|++||++..+.++.++. +.
T Consensus 2326 -----------------~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~- 2378 (2439)
T KOG1064|consen 2326 -----------------PMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD- 2378 (2439)
T ss_pred -----------------cccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-
Confidence 111112378999999999999999999999999999999998888877764 33
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEe
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYA 298 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~ 298 (764)
...++++|+..|.|+||++.....++++.
T Consensus 2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hhheeeccCcccceEEEEccccchhhcCc
Confidence 46789999999999999998877777664
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=8.4e-09 Score=107.05 Aligned_cols=320 Identities=15% Similarity=0.116 Sum_probs=192.4
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCC--------
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT-------- 105 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg-------- 105 (764)
.-+++..++ ||.|.+|++.... .|.+|.-... ..+.++. ...|..+.|+|.+ +|.+-+...
T Consensus 32 ~~p~~~~~~-----SP~G~~l~~~~~~-~V~~~~g~~~--~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 32 NWPVAYVSE-----SPLGTYLFSEHAA-GVECWGGPSK--AKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred Ccchhheee-----cCcchheehhhcc-ceEEccccch--hheeeee--cCCceecccCcccceeeeeccCCccChhhcc
Confidence 346777777 8999999987664 6889988763 2333333 3458889999997 677655433
Q ss_pred -------cEEEecCCCCCeeeeeccccCCc--eE-EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCC--c
Q 046871 106 -------TLKTWNCSSDGTCIRTLRQHSDY--VT-CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDD--C 173 (764)
Q Consensus 106 -------~V~vWd~~~~~~~~~~l~~h~~~--V~-~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~--~ 173 (764)
.+.+||+ ..+..+..+.....+ .+ -+.|+ -+..++|-- ....++++++ +.............. .
T Consensus 102 sp~~~~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s-~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 102 SPFTSKNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFS-IDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred CCccccCceeEEec-cCceeEeeccccCCcccccceeeee-ecchhhhhh-ccCeEEEEec-CCccccCchhhcccccee
Confidence 4899998 557788877766555 44 67777 556655543 3346999997 332221111111100 1
Q ss_pred CccccCCCCC--CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-----------CCCe
Q 046871 174 STGINGSGNS--LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-----------TEKV 240 (764)
Q Consensus 174 ~~~~~~~~~~--~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-----------~dg~ 240 (764)
...+++.++. +........+....+.++...... .+....-.+..=..+.|++.|++|++-- .+..
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 1111111111 111111222222333333322111 1111111122224577888888766421 2356
Q ss_pred EEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEE
Q 046871 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG--SSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYS 318 (764)
Q Consensus 241 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg--s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 318 (764)
+.|++++...... ...-.++|...+|.|.++.+++. -.+..+.++|++.. .. +......=+.+.|+|.+++++.
T Consensus 257 Lyl~~~~e~~i~V-~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 257 LYLLRITERSIPV-EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred EEEEeecccccce-eccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEE
Confidence 8888887443333 32568999999999999886655 47888999999765 32 3334555678899999999999
Q ss_pred ecCC---CcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeC------CCcEEEeeCCCCC
Q 046871 319 GGRD---LSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATT------DSSVHRWPAEGRN 373 (764)
Q Consensus 319 gs~D---g~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~------dg~I~iwd~~~~~ 373 (764)
++.| |.|-+||....-.+..-.......-+.|+||+ +.++.. |..|.||++....
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 8876 67999998776555433333445567899999 444432 7889999987543
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.8e-09 Score=115.16 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=142.1
Q ss_pred cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC---CcEEEecCCCCCeeeeeccccCCceEEEEEecCC
Q 046871 63 TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD---TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN 138 (764)
Q Consensus 63 ~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D---g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~ 138 (764)
.|.++|.+.. ..+.+..+...+....|+||+ .|+..+.+ ..|.+|++. ++.. ..+....+.+...+|+ ++
T Consensus 180 ~l~~~d~~g~---~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~-~g~~-~~l~~~~g~~~~~~~S-pD 253 (430)
T PRK00178 180 TLQRSDYDGA---RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD-TGRR-EQITNFEGLNGAPAWS-PD 253 (430)
T ss_pred EEEEECCCCC---CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC-CCCE-EEccCCCCCcCCeEEC-CC
Confidence 3777777642 245555677789999999998 66655543 358889974 3433 2233333445578999 66
Q ss_pred CcEEE-EEeCCC--eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC
Q 046871 139 SNIVA-SGGLGA--EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG 215 (764)
Q Consensus 139 ~~~la-sg~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 215 (764)
++.|+ +...++ .|++||+.++.. ..+..
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~-------------------------------------------------~~lt~ 284 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQL-------------------------------------------------SRVTN 284 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCe-------------------------------------------------EEccc
Confidence 76665 555555 588888876421 11122
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC-C--cEEEEeCC
Q 046871 216 HKESVYALAMNDSGNLLVSGGT-EK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD-S--MIRLWDLG 289 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-g--~I~iwdl~ 289 (764)
+........|+|||+.|+..+. ++ .|.++|+.+++... +...........|+|||++|+..+.+ + .|.+||+.
T Consensus 285 ~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 285 HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 2333456789999998876654 33 57888887776433 22122233457899999998877653 3 48889998
Q ss_pred CCeeeEEEeeecCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCeEEEEeecCCCeEEEEeeC
Q 046871 290 QQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD---LSLYLTDLATRESLLLCTGEHPILQLALHD 352 (764)
Q Consensus 290 ~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~~l~~sp 352 (764)
+++.. .+. +........|+|+|++++..+.+ ..|+++++............+.+...+|+|
T Consensus 364 tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 364 RGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 77643 332 12223356899999998865543 347777775444323222334455566665
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=4.6e-09 Score=116.23 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=113.3
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGGTE---KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS-GSSDS--MIRLW 286 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s-gs~Dg--~I~iw 286 (764)
+..+...+.+.+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.+++|+|||+.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 33455668889999999999987654 479999998886543 3335566778999999997764 44444 58999
Q ss_pred eCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC-CC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCC
Q 046871 287 DLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR-DL--SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 287 dl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~d 361 (764)
|+.++.. ..+..+........|+||++.|+..+. ++ .|+++|+.+++..........+....|+|++ ++.++.+
T Consensus 264 d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 264 DLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred ECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEcc
Confidence 9987654 334445555567789999998875543 33 5888898887765555455667788999998 6666655
Q ss_pred C---cEEEeeCCCC
Q 046871 362 S---SVHRWPAEGR 372 (764)
Q Consensus 362 g---~I~iwd~~~~ 372 (764)
+ .|.+||+.++
T Consensus 343 ~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 343 GGGFNIAVMDLDGG 356 (417)
T ss_pred CCceEEEEEeCCCC
Confidence 4 6888888764
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.6e-10 Score=119.80 Aligned_cols=244 Identities=19% Similarity=0.282 Sum_probs=167.6
Q ss_pred ceeecccccceeEEEEeC-CCeEEEEeCCCcEEEecCCCCC------eeeeeccccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 77 SATFESHVDWVNDAVLVG-DNTLVSCSSDTTLKTWNCSSDG------TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~-d~~l~s~s~Dg~V~vWd~~~~~------~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
+..+.+|...|..+.-.. .+.+++++.|.+|++|.+...+ .|..+++.|..+|..+.|. .+.+.++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceeeec--cC
Confidence 455779999999886654 4689999999999999985543 3667889999999999999 667777765 67
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
-|.+||.--+.......+. ...+..+.|.|+.-- +.
T Consensus 805 giHlWDPFigr~Laq~~da-------------------------------------------pk~~a~~~ikcl~nv-~~ 840 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA-------------------------------------------PKEGAGGNIKCLENV-DR 840 (1034)
T ss_pred cceeecccccchhHhhhcC-------------------------------------------cccCCCceeEecccC-cc
Confidence 7999997544322211100 011222334444321 33
Q ss_pred CEEEEE-eCCCeEEEEeCCCCceeEEec-----cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc
Q 046871 230 NLLVSG-GTEKVVRVWDPRTGSKTIKLR-----GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS 303 (764)
Q Consensus 230 ~~l~sg-s~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~ 303 (764)
.+++.| +...+|+++|.+.++-...++ +...-++++++.+.|+.++++-.+|.|.+.|.++|+.+..++.-...
T Consensus 841 ~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd 920 (1034)
T KOG4190|consen 841 HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD 920 (1034)
T ss_pred hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch
Confidence 445554 778999999999987666654 34567899999999999999999999999999999988877654443
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEE-EeCCCCeEEEEeec-CCCeEEEEeeCCceEEEeCCCcEEEee
Q 046871 304 VWALASTPTFSHVYSGGRDLSLYL-TDLATRESLLLCTG-EHPILQLALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 304 V~~l~~spd~~~l~sgs~Dg~I~i-wd~~~~~~~~~~~~-~~~V~~l~~spd~l~~~s~dg~I~iwd 368 (764)
...++ .|..+.++....|.++.+ |..-.+......+. ..+..-+.--.-.++++.....+.+|-
T Consensus 921 llqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 921 LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEe
Confidence 33333 355677888788888888 88766655443332 222222211122277777777777774
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.17 E-value=1e-07 Score=102.15 Aligned_cols=258 Identities=14% Similarity=0.145 Sum_probs=163.0
Q ss_pred cCCCcEEEEEeC----CCcEEEEeCCCC--CCccceeecccccceeEEEEeCCC-eEEEEe-CCCcEEEecCCCCCeeee
Q 046871 49 SNGVDYLFTGSR----DGTLKRWSLADD--VGSCSATFESHVDWVNDAVLVGDN-TLVSCS-SDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 49 S~d~~~L~sgs~----Dg~I~iWd~~~~--~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s-~Dg~V~vWd~~~~~~~~~ 120 (764)
+|++++|++... +|.|..|++... ..+.+.+..........+++++++ +|+++. .+|+|.++++...+....
T Consensus 45 ~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~ 124 (345)
T PF10282_consen 45 SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGE 124 (345)
T ss_dssp -TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEE
T ss_pred EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccce
Confidence 789999999876 579999998763 233344444344556678999987 555555 589999999876554433
Q ss_pred e---cc----------ccCCceEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 121 T---LR----------QHSDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 121 ~---l~----------~h~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
. +. .......++.|+ ++++++++... ...|.+|+++......
T Consensus 125 ~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l----------------------- 180 (345)
T PF10282_consen 125 VVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKL----------------------- 180 (345)
T ss_dssp EEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TE-----------------------
T ss_pred eeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceE-----------------------
Confidence 2 11 122457889999 67777766643 3479999987631000
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CCce--eEEecc----
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPR--TGSK--TIKLRG---- 257 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~--~~~~--~~~l~~---- 257 (764)
.............-..++|+|+++++++. ..++.|.++++. +++. +..+..
T Consensus 181 --------------------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 181 --------------------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp --------------------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred --------------------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 00001112334557889999999987655 457789999887 4422 222221
Q ss_pred C--CcCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCe--eeEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEe
Q 046871 258 H--TDNIRSLLLDSTGRYCLSGS-SDSMIRLWDLG--QQR--CIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTD 329 (764)
Q Consensus 258 h--~~~V~~l~~spdg~~l~sgs-~Dg~I~iwdl~--~~~--~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd 329 (764)
. ......|+++|||++|+++. .+++|.+|++. +++ .+..+.......+.++++|+|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1 12578899999999988765 46789999993 233 3344443344589999999999998776 567899887
Q ss_pred C--CCCeEEEEee--cCCCeEEEEe
Q 046871 330 L--ATRESLLLCT--GEHPILQLAL 350 (764)
Q Consensus 330 ~--~~~~~~~~~~--~~~~V~~l~~ 350 (764)
+ .+|....... .-....||.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 6 4666554432 2344556655
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.1e-08 Score=107.49 Aligned_cols=310 Identities=13% Similarity=0.129 Sum_probs=181.5
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEE-----EeCC-----CcEEEecCCCCCe
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVS-----CSSD-----TTLKTWNCSSDGT 117 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s-----~s~D-----g~V~vWd~~~~~~ 117 (764)
|++|+++|.+. +..++|++..... .+.+...- .+.++.|+|-+ +|.+ ...+ -.+++|+... +.
T Consensus 43 S~~G~lfA~~~-~~~v~i~~~~~~~--~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~ 116 (566)
T KOG2315|consen 43 SNNGRLFAYSD-NQVVKVFEIATLK--VVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GV 116 (566)
T ss_pred cCCCcEEEEEc-CCeEEEEEccCCc--EEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc-ce
Confidence 78888777664 5689999998742 33333322 78899999987 4432 1222 3467999744 44
Q ss_pred eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC--CCCCCcccceeecCCC
Q 046871 118 CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING--SGNSLPVTSLRTIGSS 195 (764)
Q Consensus 118 ~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 195 (764)
....+..-...-++..|+ .|..+ +.--..+.+.+|++.+......... ........++. ....+.......-+..
T Consensus 117 ~~s~~q~k~Q~~W~~qfs-~dEsl-~arlv~nev~f~~~~~f~~~~~kl~-~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFS-IDESL-AARLVSNEVQFYDLGSFKTIQHKLS-VSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred ehhheehhhhcCcccccc-cchhh-hhhhhcceEEEEecCCccceeeeee-ccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 444443322223688898 44333 2222346799999876322211000 00000001111 1111111122222233
Q ss_pred CcccccccCCCCcc--ceeccCCCCcEEEEEEcCCCCEE-E--EEeC---------CCeEEEEeCCCCceeEEeccCCcC
Q 046871 196 NSISAHTSQSQGYV--PIAAKGHKESVYALAMNDSGNLL-V--SGGT---------EKVVRVWDPRTGSKTIKLRGHTDN 261 (764)
Q Consensus 196 ~~i~~~~~~~~~~~--~~~~~~~~~~V~~l~~sp~g~~l-~--sgs~---------dg~I~iwd~~~~~~~~~l~~h~~~ 261 (764)
..++++.....+.. .....-....=..+.|++-|.-| + +..- +..+++.++........+. ..++
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GP 272 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGP 272 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCC
Confidence 33444433311110 00000011222356777766532 2 2222 3468888887445555554 5789
Q ss_pred eEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCeEE
Q 046871 262 IRSLLLDSTGRYCLS--GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD---LSLYLTDLATRESL 336 (764)
Q Consensus 262 V~~l~~spdg~~l~s--gs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D---g~I~iwd~~~~~~~ 336 (764)
|.++.|+++|+.+++ |-.-..+.|||++ +.++. ....++-+++.|+|.|++++.+|.+ |.|-+||+.+.+++
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeE--eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 999999999987654 5566789999984 44444 4457788899999999999988764 78999999997777
Q ss_pred EEeecCCCeEEEEeeCCc--eEEEeC------CCcEEEeeCCCC
Q 046871 337 LLCTGEHPILQLALHDDN--IWVATT------DSSVHRWPAEGR 372 (764)
Q Consensus 337 ~~~~~~~~V~~l~~spd~--l~~~s~------dg~I~iwd~~~~ 372 (764)
..+.... -+-+.|+||| +++++. |+.++||+....
T Consensus 350 ~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 6665433 3557899999 888775 788999998653
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.1e-08 Score=112.32 Aligned_cols=240 Identities=11% Similarity=0.004 Sum_probs=143.7
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-e--E-EEEeCCC--cEEEecCCCCCeeeeeccccCCceEEEEEe
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-T--L-VSCSSDT--TLKTWNCSSDGTCIRTLRQHSDYVTCLAAA 135 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~--l-~s~s~Dg--~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~ 135 (764)
+.|.+.|.+... .+.+......+..-.|+||| . + ++...++ .|.+.++.. ++ ...+....+.....+|+
T Consensus 165 ~~l~~~d~dG~~---~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~-~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQN---LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PA-GKKILALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCC---ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCC-CC-ceEeecCCCCccceEEC
Confidence 356677776532 33444455566778999996 3 3 2444444 466667632 32 22333334445567899
Q ss_pred cCCCcEEEEEe-CCC----eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccc
Q 046871 136 EKNSNIVASGG-LGA----EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVP 210 (764)
Q Consensus 136 p~~~~~lasg~-~dg----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 210 (764)
+|++.|+..+ .+| .+..|++..+.. +...
T Consensus 240 -PDG~~Laf~s~~~g~~di~~~~~~~~~g~~---------------------------------------------g~~~ 273 (428)
T PRK01029 240 -PRKKLLAFISDRYGNPDLFIQSFSLETGAI---------------------------------------------GKPR 273 (428)
T ss_pred -CCCCEEEEEECCCCCcceeEEEeecccCCC---------------------------------------------Ccce
Confidence 6776666544 223 233355543200 0000
Q ss_pred eeccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE--eCCC-CceeEEeccCCcCeEEEEEcCCCCEEEEEeCC---CcE
Q 046871 211 IAAKGHKESVYALAMNDSGNLLVSGG-TEKVVRVW--DPRT-GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD---SMI 283 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iw--d~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D---g~I 283 (764)
.............+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|||++|+..+.+ ..|
T Consensus 274 ~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I 353 (428)
T PRK01029 274 RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQI 353 (428)
T ss_pred EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEE
Confidence 11111223345679999999887665 45644444 5432 23344555555677889999999998876543 369
Q ss_pred EEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe-cC--CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCC
Q 046871 284 RLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG-GR--DLSLYLTDLATRESLLLCTGEHPILQLALHDD 353 (764)
Q Consensus 284 ~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg-s~--Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd 353 (764)
.+||+.+++... +......+....|+|||+.|+.. .. ...|+++|+.+++........+.+...+|+|-
T Consensus 354 ~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 354 CVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 999998887643 33333456788999999988743 32 35788999988877666655555666777763
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=2.1e-08 Score=109.23 Aligned_cols=267 Identities=14% Similarity=0.132 Sum_probs=168.8
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++.++.++.++.|..+|. .+++.+-............+. ++..++.++.++.+..+|..++...-+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~--------- 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDA-ETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRA--------- 131 (377)
T ss_pred CCEEEEECCCCeEEEEEc-cCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeee---------
Confidence 568888889999999996 456655443332222222232 3667788888999999999875322110
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYA-LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~-l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
. ..+.+.+ ..+ .+..++.++.++.|..||.++|+.+.
T Consensus 132 -----------------------------~-----------~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 132 -----------------------------K-----------LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred -----------------------------c-----------cCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 0 0011111 111 24567778889999999999999888
Q ss_pred EeccCCcCeE-----EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC-------ceEEEEEcC--CCCEEEEe
Q 046871 254 KLRGHTDNIR-----SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD-------SVWALASTP--TFSHVYSG 319 (764)
Q Consensus 254 ~l~~h~~~V~-----~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~-------~V~~l~~sp--d~~~l~sg 319 (764)
++......+. +..+. +..++.++.++.+..+|+.+|+.+.+...... ....+.-+| .+..++.+
T Consensus 170 ~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 170 TYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred EEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE
Confidence 7764332211 11122 34678888899999999999987765432110 001111111 34678888
Q ss_pred cCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccC
Q 046871 320 GRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLE 399 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 399 (764)
+.+|.++.+|..+++.+....... ........+.+++++.+|.|..+|..+++.+-........
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~--------------- 311 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDASS-YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR--------------- 311 (377)
T ss_pred EcCCEEEEEECCCCcEEEeeccCC-ccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC---------------
Confidence 899999999999998876655322 2334445555889999999999999888644222100000
Q ss_pred CCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 400 GSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 400 ~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
......+ .+.+|++++.+|.|+++|..+|+.+..+
T Consensus 312 --------------------~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 312 --------------------QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred --------------------ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 0000011 3468888999999999999999999877
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=134.86 Aligned_cols=218 Identities=17% Similarity=0.228 Sum_probs=160.4
Q ss_pred ecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 046871 80 FESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157 (764)
Q Consensus 80 l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~ 157 (764)
++.|-..|.++.-+|.. +.++|+.||.|++|.... ++.+..++ .....|+.+.|+ ..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGNSRVTRSRFN-HQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeeccCcchhhhhhhc-ccCCceeeeccCCceeecccC
Confidence 34455667777777765 889999999999999844 44443332 233789999999 789999999999999999987
Q ss_pred CCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-
Q 046871 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG- 236 (764)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs- 236 (764)
.. .....+.|......+.|-. ..+++++
T Consensus 2282 pk-------------------------------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~ 2310 (2439)
T KOG1064|consen 2282 PK-------------------------------------------------PYTSWQCHNKALSDFRFIG--SLLATAGR 2310 (2439)
T ss_pred Cc-------------------------------------------------ceeccccCCccccceeeee--hhhhcccc
Confidence 31 1122455677777777763 5566653
Q ss_pred --CCCeEEEEeCCCC---ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 237 --TEKVVRVWDPRTG---SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 237 --~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
.++.+.+||..-. ..+. ..|.+.++++++.|....|++|+.+|.|++||++..+.+++++. ++
T Consensus 2311 s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~- 2378 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD- 2378 (2439)
T ss_pred CCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-
Confidence 5678999997432 2233 78999999999999999999999999999999999888887764 44
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCe--------EEEEeeCCc-eEEEeCCC
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI--------LQLALHDDN-IWVATTDS 362 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V--------~~l~~spd~-l~~~s~dg 362 (764)
...+|++|+..|.|+||++.....+..+.+...= ..+...+.+ |++++.|+
T Consensus 2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 5678999999999999999988776666543211 223333333 66666665
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.3e-10 Score=118.60 Aligned_cols=284 Identities=16% Similarity=0.218 Sum_probs=191.5
Q ss_pred eCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC-----CCccceeecccccceeEEEEeCCC-eEEE
Q 046871 27 NNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD-----VGSCSATFESHVDWVNDAVLVGDN-TLVS 100 (764)
Q Consensus 27 ~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~-~l~s 100 (764)
+...+.||...|.+++-. .+.+-+++++.|.+|++|.+... +..|..+++.|+.+|.++.|..+. .++
T Consensus 727 rL~nf~GH~~~iRai~Ai-----dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~- 800 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAI-----DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA- 800 (1034)
T ss_pred eeecccCcHHHhHHHHhc-----ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee-
Confidence 446778999999999874 45677889999999999998642 234788899999999999999875 444
Q ss_pred EeCCCcEEEecCCCCCeeeeecc-----ccCCceEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 101 CSSDTTLKTWNCSSDGTCIRTLR-----QHSDYVTCLAAAEKNSNIVASG-GLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 101 ~s~Dg~V~vWd~~~~~~~~~~l~-----~h~~~V~~l~~~p~~~~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
+.||-|.+||. --++.+.... +..+.|.|+.-. +..+++.| +...+|+++|.+...-...
T Consensus 801 -ScD~giHlWDP-Figr~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E---------- 866 (1034)
T KOG4190|consen 801 -SCDGGIHLWDP-FIGRLLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCE---------- 866 (1034)
T ss_pred -eccCcceeecc-cccchhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceee----------
Confidence 44788999996 3344443221 122345554322 34444444 7788999999886421110
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK 254 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~ 254 (764)
..+....+....+.+++..+.|++++++-.+|.|.+.|.++|+.+..
T Consensus 867 ---------------------------------~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 867 ---------------------------------LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred ---------------------------------EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc
Confidence 01111244567789999999999999999999999999999999988
Q ss_pred eccCCcCeEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 255 LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRL-WDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 255 l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~i-wdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
++........++- |..+.|+....|.++.+ |..-.+....+.+....+..-+ ..-|.-++++.....+.+|.-...
T Consensus 914 wrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~ 990 (1034)
T KOG4190|consen 914 WRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAE 990 (1034)
T ss_pred CCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchh
Confidence 8765555555543 55667787778999998 9877776555554333332211 123556777777777777753211
Q ss_pred ----e---EEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEE
Q 046871 334 ----E---SLLLCTGEHPILQLALHDDN--IWVATTDSSVHR 366 (764)
Q Consensus 334 ----~---~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~i 366 (764)
. .++.-...+..++++.-|-. ++.|...|.|.+
T Consensus 991 ~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 991 LHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1 11111234567788877766 777777887765
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=2e-08 Score=99.34 Aligned_cols=274 Identities=13% Similarity=0.151 Sum_probs=172.1
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCe----eeeeccccC------------CceEEEEEecC-CCcEEEEE
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGT----CIRTLRQHS------------DYVTCLAAAEK-NSNIVASG 145 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~----~~~~l~~h~------------~~V~~l~~~p~-~~~~lasg 145 (764)
.+-|.++.|...| +|++|..+|.|.++.-..... ....++.|. ..|..+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 5568899999887 999999999999997433222 223344443 35788888742 34577778
Q ss_pred eCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee--ecCCCCcccccccCCCCccceeccCCCCcEEEE
Q 046871 146 GLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR--TIGSSNSISAHTSQSQGYVPIAAKGHKESVYAL 223 (764)
Q Consensus 146 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l 223 (764)
+.|.+|++|.+............... +.......+. .......+... .....-..+|.--|.++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~---------~~~~~~~~lr~p~~~~~~~~vea-----~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEE---------GPPGTITSLRLPVEGRHDLEVEA-----SPRRVYANAHTYHINSI 170 (433)
T ss_pred cCCcceeeeeeecccccccccccccc---------CCCCccceeeceeeccccceeee-----eeeeeccccceeEeeee
Confidence 88999999999764322210000000 0000000000 00000000000 00011235788889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeccC-----CcCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCee-
Q 046871 224 AMNDSGNLLVSGGTEKVVRVWDPRTGSK---TIKLRGH-----TDNIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQRC- 293 (764)
Q Consensus 224 ~~sp~g~~l~sgs~dg~I~iwd~~~~~~---~~~l~~h-----~~~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~~- 293 (764)
.++.|+..++++ .|=.|.+|++.--.. +..++.+ +.-|++..|+|. .+.++-.++.|+|++-|++....
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 999999988887 567899999864332 2223333 236788899994 46777888899999999985321
Q ss_pred ---eEEEe------------eecCceEEEEEcCCCCEEEEecCCCcEEEEeC-CCCeEEEEeec-------------CCC
Q 046871 294 ---IHSYA------------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDL-ATRESLLLCTG-------------EHP 344 (764)
Q Consensus 294 ---~~~l~------------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~-~~~~~~~~~~~-------------~~~ 344 (764)
...+. .--..|..+.|+++|+++++-+. -+|++||+ ...+++..++. .+.
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 11111 12245888999999999997543 58999999 44555554431 223
Q ss_pred e---EEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 345 I---LQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 345 V---~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
| ..++|+.++ +++|+..+..++++...+.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 3 467888886 8999999999999976554
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.9e-08 Score=111.47 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=137.6
Q ss_pred cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC-CC--cEEEecCCCCCeeeeeccccCCceEEEEEecCC
Q 046871 63 TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS-DT--TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN 138 (764)
Q Consensus 63 ~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~-Dg--~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~ 138 (764)
.|.++|.+... .+.+..+...+.+..|+||| .|+..+. ++ .|.+||+.. ++. ..+....+.....+|+ ++
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~~~g~~~~~~wS-PD 272 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTSFPGINGAPRFS-PD 272 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEecCCCCCcCCeeEC-CC
Confidence 56677876522 34555567788899999998 5655443 33 588888743 332 2222222334467899 56
Q ss_pred CcEEE-EEeCCCe--EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC
Q 046871 139 SNIVA-SGGLGAE--VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG 215 (764)
Q Consensus 139 ~~~la-sg~~dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 215 (764)
++.|+ +.+.++. |+++|+.++.. ..+..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-------------------------------------------------~~lt~ 303 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-------------------------------------------------TRITR 303 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-------------------------------------------------EECcc
Confidence 66554 5566664 77777765311 11222
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC-C--cEEEEeCC
Q 046871 216 HKESVYALAMNDSGNLLVSGGT-EK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD-S--MIRLWDLG 289 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-g--~I~iwdl~ 289 (764)
+.......+|+|||+.|+..+. ++ .|.++|+.+++... +..........+|+|||++|+..+.+ + .|.++|+.
T Consensus 304 ~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 304 HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 3334567789999998876654 33 57777887776433 22122233457899999998776553 3 46667887
Q ss_pred CCeeeEEEeeecCceEEEEEcCCCCEEEEecC-CC--cEEEEeCCCCeEEEEee-cCCCeEEEEeeC
Q 046871 290 QQRCIHSYAVHTDSVWALASTPTFSHVYSGGR-DL--SLYLTDLATRESLLLCT-GEHPILQLALHD 352 (764)
Q Consensus 290 ~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~-~~~~V~~l~~sp 352 (764)
+++.. .+... .......|+|+|++|+..+. ++ .+++++.. +.....+. ..+.+...+|+|
T Consensus 383 ~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 383 TGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 77643 33322 12234579999998875443 33 37777875 43333333 344566677776
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=3.1e-08 Score=106.21 Aligned_cols=280 Identities=10% Similarity=0.068 Sum_probs=190.7
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-------------ccceeecccccceeEEEEeCCC-eEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-------------SCSATFESHVDWVNDAVLVGDN-TLV 99 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-------------~~~~~l~~h~~~V~~v~~s~d~-~l~ 99 (764)
......|++| +....++|+||.||.+++-.+.+... ..-+++++|...|.-+.|+.+. .|-
T Consensus 13 nnvkL~c~~W-----Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEW-----NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEE-----cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4456889999 67889999999999999998876421 2346788999999999999775 788
Q ss_pred EEeCCCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 100 SCSSDTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 100 s~s~Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
++..+|.|.||-+-....+...+. .....|.+++|. .++..++..-.||.|.+=.++..+.
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRI----------------- 149 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRI----------------- 149 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeecccee-----------------
Confidence 888999999999754433333222 345678999999 8899999999999888876664311
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------ce
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-------SK 251 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-------~~ 251 (764)
|... ++ ......+.|++|.+.++.+-.+|.+.+||.... .+
T Consensus 150 ----------------------wgKe--------Lk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c 197 (1189)
T KOG2041|consen 150 ----------------------WGKE--------LK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC 197 (1189)
T ss_pred ----------------------cchh--------cc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce
Confidence 1100 11 111336789999998888889999999996532 11
Q ss_pred eEE----eccCCcCeEEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 252 TIK----LRGHTDNIRSLLLD--------STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 252 ~~~----l~~h~~~V~~l~~s--------pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
... +......|-.+.|. ||...|+++-..|.+.|-.-.+......+. ..-.+..+.|+++|..|+.+
T Consensus 198 ~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 198 EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEc
Confidence 111 11111234455553 577889999999988776443322222222 12467889999999999988
Q ss_pred cCCC---------cEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc-eEEEeCCCcEEEeeCC
Q 046871 320 GRDL---------SLYLTDLATRESLLLCTG-EHPILQLALHDDN-IWVATTDSSVHRWPAE 370 (764)
Q Consensus 320 s~Dg---------~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~-l~~~s~dg~I~iwd~~ 370 (764)
+.+. .|.+|.. -|..+..++. ...|++++|-..| -++-..|+.|++=+++
T Consensus 277 G~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred cCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 7642 4455443 3445555553 5579999999988 3444557777776654
No 263
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.8e-08 Score=109.19 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=187.2
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-------------eEEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-------------TLVS 100 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-------------~l~s 100 (764)
|+..-+++.| ++ +.++|-|+. ..|.+-|..+ .+.++.++.|...|+.+.|.|.. .|++
T Consensus 14 ~~sN~~A~Dw-----~~-~GLiAygsh-slV~VVDs~s--~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 14 SRSNRNAADW-----SP-SGLIAYGSH-SLVSVVDSRS--LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred Cccccccccc-----Cc-cceEEEecC-ceEEEEehhh--hhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 4444677777 45 457777765 4788888887 78899999999999999998631 3566
Q ss_pred EeCCCcEEEecCCCCCeeeeeccccCCceEEEEEec--CCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 101 CSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAE--KNS-NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 101 ~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p--~~~-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
+...|.|.+||. ..+..+..+..|.+++..++|.+ +++ ++|+.-.....|.+|+..++...-+
T Consensus 85 aD~~GrIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk------------- 150 (1062)
T KOG1912|consen 85 ADISGRIILVDF-VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK------------- 150 (1062)
T ss_pred ccccCcEEEEEe-hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-------------
Confidence 777799999997 44666677888999999999975 334 6677777778999999888643221
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-------C
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRT-------G 249 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~-------~ 249 (764)
.........|+.+.| |.+.+..-+..|.|.+.+.-. +
T Consensus 151 -----------------------------------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 151 -----------------------------------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred -----------------------------------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 111223345577777 556666666667666665321 2
Q ss_pred ceeEEeccCCc-------------------------CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCce
Q 046871 250 SKTIKLRGHTD-------------------------NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV 304 (764)
Q Consensus 250 ~~~~~l~~h~~-------------------------~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V 304 (764)
+..+.-..|.+ ..-.++|+|.-+.++-......+.++|++-..++.+.....+.+
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a 275 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA 275 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence 22222222222 01124567766655555567889999999999999888777777
Q ss_pred EEEEEcCCC--CEEEEecCCCcEEEEeCCC----------------CeEEEEee--cCCCeEEEEeeCC---ceEEEeCC
Q 046871 305 WALASTPTF--SHVYSGGRDLSLYLTDLAT----------------RESLLLCT--GEHPILQLALHDD---NIWVATTD 361 (764)
Q Consensus 305 ~~l~~spd~--~~l~sgs~Dg~I~iwd~~~----------------~~~~~~~~--~~~~V~~l~~spd---~l~~~s~d 361 (764)
.-+.+-|++ ..|++.-.||.+.+|--+. +++...+. .+..+......|. -+++--.+
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~ 355 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSS 355 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhc
Confidence 777776654 5799999999999997554 22222111 1112222222333 25555567
Q ss_pred CcEEEeeCCCCCCc
Q 046871 362 SSVHRWPAEGRNPQ 375 (764)
Q Consensus 362 g~I~iwd~~~~~~~ 375 (764)
|.+.+|.+.+++..
T Consensus 356 g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 356 GDSTFWQLSNGRIH 369 (1062)
T ss_pred chhHHHhhhcCCcC
Confidence 88899999876544
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.09 E-value=1.5e-08 Score=98.31 Aligned_cols=153 Identities=14% Similarity=0.189 Sum_probs=123.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCeeeE
Q 046871 220 VYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK--TIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLG-QQRCIH 295 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~-~~~~~~ 295 (764)
..++.|++.+..++++..+|.+.+-+...... ++.++.|.-.+....|+. +.+.+++|+.|+.+..||++ .++++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778889899999999999999766655543 447899999999999986 34688999999999999998 445554
Q ss_pred E-EeeecCceEEEEEcC-CCCEEEEecCCCcEEEEeCC-CCeEEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeC
Q 046871 296 S-YAVHTDSVWALASTP-TFSHVYSGGRDLSLYLTDLA-TRESLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPA 369 (764)
Q Consensus 296 ~-l~~h~~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~ 369 (764)
. .+.|+..|.+|..+| ...+|++|+.|-.|++||.+ -++++..-...+.|+.+..+|.. ++.++.-+..+|-+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 4 567999999999875 67899999999999999999 57777777778899999999986 566666666777766
Q ss_pred CCC
Q 046871 370 EGR 372 (764)
Q Consensus 370 ~~~ 372 (764)
..+
T Consensus 284 ~~~ 286 (339)
T KOG0280|consen 284 SDK 286 (339)
T ss_pred ccc
Confidence 554
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1e-09 Score=117.80 Aligned_cols=243 Identities=17% Similarity=0.251 Sum_probs=163.2
Q ss_pred CCCCCCCCccceeeEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccc-ccc
Q 046871 8 GNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESH-VDW 86 (764)
Q Consensus 8 g~~~~~~~p~~~~~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h-~~~ 86 (764)
.+..++..|.-.+.++... .++++++.+ +|.|+-++.+++-|. .+-|+... ....+-+..- .-.
T Consensus 5 i~~gpyns~tf~kslsl~v--------~~~~~a~si-----~p~grdi~lAsr~gl-~i~dld~p-~~ppr~l~h~tpw~ 69 (1081)
T KOG0309|consen 5 INEGPYNSPTFGKSLSLKV--------DGGFNAVSI-----NPSGRDIVLASRQGL-YIIDLDDP-FTPPRWLHHITPWQ 69 (1081)
T ss_pred cccCCCCCCccCceeEEEe--------cCcccceee-----ccccchhhhhhhcCe-EEEeccCC-CCCceeeeccCcch
Confidence 3445556666666666643 357888888 688999999988764 45677653 2222222211 224
Q ss_pred eeEEEEeCCC---eEEEEeCCCcEEEecCCCC--CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 87 VNDAVLVGDN---TLVSCSSDTTLKTWNCSSD--GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 87 V~~v~~s~d~---~l~s~s~Dg~V~vWd~~~~--~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
|-++.|++.. +-++..+...-.+|++... ......+.+|...|+.+.|.|.....+++++.|..+..||++....
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 6778888762 4445555556678998543 3344567889999999999998999999999999999999987421
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVV 241 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I 241 (764)
+ ......-......++|+.....+.+.+....|
T Consensus 150 p-----------------------------------------------~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 150 P-----------------------------------------------FYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred c-----------------------------------------------eeeeecccccCceeeecccCcchhhhccCCce
Confidence 1 11112223334567787633344455566789
Q ss_pred EEEeCCCC-ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCee--eEEEeeecCceEEEEEcCCC
Q 046871 242 RVWDPRTG-SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRC--IHSYAVHTDSVWALASTPTF 313 (764)
Q Consensus 242 ~iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~--~~~l~~h~~~V~~l~~spd~ 313 (764)
++||.+.| .++..+++|...|..+.|.. ....+.+++.||+|+.||...... -++. ....+||.-.+.|-|
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFG 257 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccC
Confidence 99999877 67788999999999999876 334688999999999999854321 1111 133456666666643
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=5.9e-08 Score=105.26 Aligned_cols=405 Identities=12% Similarity=0.054 Sum_probs=227.3
Q ss_pred CCCCCCeeEEEeeccc-----ccCC--CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC---C--eEE
Q 046871 32 TKHCAGINCLAVLKSS-----VSNG--VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD---N--TLV 99 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~-----~S~d--~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d---~--~l~ 99 (764)
.-|...|+.+.|.|.- +||. .-+||++...|.|.+||... ...+..++.|.++|.+++|-+. . .|+
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~--~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL--ASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh--hhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 4689999999998753 3433 23677888889999999987 5567778899999999999753 2 566
Q ss_pred EEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 100 SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 100 s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
.-....+|.+|+. .+|+..-..........|+.+.|-+...+..-+..|.+.+-+.-....+......+... .
T Consensus 130 aIh~ss~lvLwnt-dtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~------s 202 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNT-DTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT------S 202 (1062)
T ss_pred EecCCcEEEEEEc-cCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe------c
Confidence 6667789999995 45666666655566788899998888888888888888887765432221111110000 0
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT 259 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 259 (764)
.-..+.-....+..+ +.. .... .... + .-....++|+|.-+.++.......+.++|++-..++....-..
T Consensus 203 d~Sdl~~lere~at~-ns~--ts~~--~sa~--f---ity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier 272 (1062)
T KOG1912|consen 203 DHSDLAHLERETATG-NST--TSTP--ASAY--F---ITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER 272 (1062)
T ss_pred Cccchhhhhhhhhcc-ccc--cCCC--cchh--H---HHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc
Confidence 000000000000000 000 0000 0000 0 0001235667765555555566789999999888888777666
Q ss_pred cCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCC----------------CeeeEEEeee-cCceEEEEEcCC-CCEEEEe
Q 046871 260 DNIRSLLLDSTGR--YCLSGSSDSMIRLWDLGQ----------------QRCIHSYAVH-TDSVWALASTPT-FSHVYSG 319 (764)
Q Consensus 260 ~~V~~l~~spdg~--~l~sgs~Dg~I~iwdl~~----------------~~~~~~l~~h-~~~V~~l~~spd-~~~l~sg 319 (764)
+.+.-+.+-|+++ .|++.-.||.+.+|-.+. +.....+..- +-.+......|. ...++.-
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl 352 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVL 352 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhh
Confidence 7677777777765 588999999999996543 1111111100 011111122222 1111111
Q ss_pred cCCCcEEEEeCCC-------------------------------------------CeEEEEeecCCCeEEEEeeCC---
Q 046871 320 GRDLSLYLTDLAT-------------------------------------------RESLLLCTGEHPILQLALHDD--- 353 (764)
Q Consensus 320 s~Dg~I~iwd~~~-------------------------------------------~~~~~~~~~~~~V~~l~~spd--- 353 (764)
-.+|.+.+|.+++ |............+...-.|.
T Consensus 353 ~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~ 432 (1062)
T KOG1912|consen 353 YSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNT 432 (1062)
T ss_pred hhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCc
Confidence 1223333333221 111111111111111111221
Q ss_pred --c----eEEEeCCCcEEEeeCCCCCCceeeecCCcceec--------ccccccccccc-----CCCCCcccCCCCCCcc
Q 046871 354 --N----IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAG--------NLSFSRARVSL-----EGSTPVSSRFKEPNFT 414 (764)
Q Consensus 354 --~----l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~~s~~~~~~-----~~~~~~~~~~~~~~~~ 414 (764)
+ +++|+..|+|.++|+.++...+.+..|.+.+.. -++|+-..... -+...+-++.......
T Consensus 433 ~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 433 PAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR 512 (1062)
T ss_pred cceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc
Confidence 1 788999999999999998877766655544321 11222111100 0111111121111112
Q ss_pred -----ccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeee
Q 046871 415 -----IPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVED 455 (764)
Q Consensus 415 -----i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~ 455 (764)
-+...+|..+..|.-|+||+..-.|--+.+||+.+..+++.
T Consensus 513 fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~ 558 (1062)
T KOG1912|consen 513 FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRL 558 (1062)
T ss_pred cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHH
Confidence 23356699999999999999999999999999988776654
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=1.2e-07 Score=98.63 Aligned_cols=334 Identities=16% Similarity=0.141 Sum_probs=196.8
Q ss_pred EEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEE
Q 046871 65 KRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVAS 144 (764)
Q Consensus 65 ~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~las 144 (764)
..|+..+ ......+....-++..++|+|.|.++....-..|.+|.-.....+ ..+. | ..|..+.|+ +++++|.+
T Consensus 15 ~f~~~~s--~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l-~~~~-~-~~V~~~~fS-P~~kYL~t 88 (561)
T COG5354 15 VFWNSQS--EVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL-VRFR-H-PDVKYLDFS-PNEKYLVT 88 (561)
T ss_pred EeecCcc--ccccccccccCcchhheeecCcchheehhhccceEEccccchhhe-eeee-c-CCceecccC-cccceeee
Confidence 4555554 233344444566788999999996655555667999995443333 3332 3 468899999 78999988
Q ss_pred EeCCC---------------eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcc
Q 046871 145 GGLGA---------------EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV 209 (764)
Q Consensus 145 g~~dg---------------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 209 (764)
-...+ .+.+||+.++............ ..++........-...+.. ....+.++... ....
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~--~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~ 164 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP--YLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIE 164 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc--ccccceeeeeecchhhhhh-ccCeEEEEecC-Cccc
Confidence 76543 4899999887544222111110 0000000000000000000 12223333311 1111
Q ss_pred ceeccC-CCCcEEEEEEcCCC--CEEEE-----EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe---
Q 046871 210 PIAAKG-HKESVYALAMNDSG--NLLVS-----GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--- 278 (764)
Q Consensus 210 ~~~~~~-~~~~V~~l~~sp~g--~~l~s-----gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs--- 278 (764)
...... ....|....|+|.+ ..|+. ++..+.+++|.+..++.+.+-.-....-..+.|.+.|++|++--
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 111111 13567888888854 33443 45678899999887665554322223334678888888765321
Q ss_pred --------CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe--cCCCcEEEEeCCCCeEEEEeecCCCeEEE
Q 046871 279 --------SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG--GRDLSLYLTDLATRESLLLCTGEHPILQL 348 (764)
Q Consensus 279 --------~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~V~~l 348 (764)
....++|++++... +.....-.++|...+|.|.++.|++. -.+-.+.++|++.. +.....+..=..+
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~ 321 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTI 321 (561)
T ss_pred eecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccc
Confidence 23568888886433 33333567899999999998887744 46788999999876 3333334455678
Q ss_pred EeeCCc--eEEEeCC---CcEEEeeCCCCCCce-eeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCce
Q 046871 349 ALHDDN--IWVATTD---SSVHRWPAEGRNPQK-VFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIV 422 (764)
Q Consensus 349 ~~spd~--l~~~s~d---g~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~ 422 (764)
.|+|.+ +++++-| |.|.+|+..+.-... .+. .....
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~--------------------------------------~~n~s 363 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN--------------------------------------GLNTS 363 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEee--------------------------------------cCCce
Confidence 899988 6666654 789999887643322 111 11234
Q ss_pred EeEEecCCcEEEEeeC------CCcEEEEEccc
Q 046871 423 QHEILNNRRHVLTKDA------AGSVKLWEITR 449 (764)
Q Consensus 423 ~~~~s~dg~~l~t~s~------dG~V~lWdi~t 449 (764)
.+.|+||+.++.+.-+ |..|.|||+..
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5678999999877543 77899999873
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.3e-08 Score=108.82 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=136.3
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG---AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
.|.++|. ++...+.+..+...+...+|+ ++++.|+..+.+ ..|.+||+.++...
T Consensus 180 ~l~~~d~--~g~~~~~l~~~~~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------- 236 (430)
T PRK00178 180 TLQRSDY--DGARAVTLLQSREPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------- 236 (430)
T ss_pred EEEEECC--CCCCceEEecCCCceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEE--------------------
Confidence 3777775 344455565677788999999 677777665533 36889998764211
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCC--eEEEEeCCCCceeEEeccCC
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEK--VVRVWDPRTGSKTIKLRGHT 259 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg--~I~iwd~~~~~~~~~l~~h~ 259 (764)
.+....+.+...+|+|+|+.|+. ...+| .|.+||+.+++.. .+..+.
T Consensus 237 -----------------------------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 237 -----------------------------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred -----------------------------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 01112233446889999998874 44444 6888899887643 455555
Q ss_pred cCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC-C--cEEEEeCCCC
Q 046871 260 DNIRSLLLDSTGRYCLSGSS-DS--MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD-L--SLYLTDLATR 333 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~-Dg--~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D-g--~I~iwd~~~~ 333 (764)
.......|+|||+.|+..+. ++ .|+++|+.+++... +...........|+|++++|+..+.+ + .|.++|+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 56677899999998876654 33 57888887776433 22222234457899999999866543 3 5889999888
Q ss_pred eEEEEeecCCCeEEEEeeCCc--eEEEeC-CC--cEEEeeCCCC
Q 046871 334 ESLLLCTGEHPILQLALHDDN--IWVATT-DS--SVHRWPAEGR 372 (764)
Q Consensus 334 ~~~~~~~~~~~V~~l~~spd~--l~~~s~-dg--~I~iwd~~~~ 372 (764)
+...... ........|+|++ ++.++. ++ .|.++++...
T Consensus 366 ~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 366 SVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 6544332 2223356899998 444443 33 4666676543
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.9e-08 Score=110.55 Aligned_cols=221 Identities=13% Similarity=0.064 Sum_probs=137.6
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcE---EEEEeCCC--eEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNI---VASGGLGA--EVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~---lasg~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
.|.+.|. ++...+.+......+..-+|+ +|++. +++...++ .|.+.++.++...
T Consensus 166 ~l~~~d~--dG~~~~~lt~~~~~~~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~------------------ 224 (428)
T PRK01029 166 ELWSVDY--DGQNLRPLTQEHSLSITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK------------------ 224 (428)
T ss_pred eEEEEcC--CCCCceEcccCCCCcccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCce------------------
Confidence 4666664 444445555555566778999 56543 23444443 5777777654211
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCC---cee
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-----EKVVRVWDPRTG---SKT 252 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-----dg~I~iwd~~~~---~~~ 252 (764)
.+....+.....+|+|||+.|+..+. +-.+.+|++..+ +..
T Consensus 225 -------------------------------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~ 273 (428)
T PRK01029 225 -------------------------------KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPR 273 (428)
T ss_pred -------------------------------EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcce
Confidence 11122334456799999998886543 334555777653 322
Q ss_pred EEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEEE--eCCC-CeeeEEEeeecCceEEEEEcCCCCEEEEecCC---CcE
Q 046871 253 IKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRLW--DLGQ-QRCIHSYAVHTDSVWALASTPTFSHVYSGGRD---LSL 325 (764)
Q Consensus 253 ~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iw--dl~~-~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D---g~I 325 (764)
.....+.......+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|||+.|+..+.+ ..|
T Consensus 274 ~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I 353 (428)
T PRK01029 274 RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQI 353 (428)
T ss_pred EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEE
Confidence 22322333456789999999887665 45654555 4432 33344555555667889999999988865443 469
Q ss_pred EEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe-C--CCcEEEeeCCCCCCceee
Q 046871 326 YLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT-T--DSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s-~--dg~I~iwd~~~~~~~~~~ 378 (764)
++||+.+++..........+....|+||+ |+..+ . ...|.+|++.+++.....
T Consensus 354 ~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 354 CVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred EEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 99999998876655444567789999998 44333 2 356888898877654443
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.1e-08 Score=108.50 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=124.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEec--cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceE
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLR--GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVW 305 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~ 305 (764)
+...++-|...|.|.+|+...|+...++. .|.++|.++.++.+-..|.+++.|+.+..|+....+.+..+......+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 44578889999999999999999888876 6889999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCC-----c---eEEEeCCCcEEEeeCCC
Q 046871 306 ALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDD-----N---IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 306 ~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd-----~---l~~~s~dg~I~iwd~~~ 371 (764)
+++.+||+..+++++ +.|++||+++++.+..+. |.++|.++.|.-+ | |-++..+..|.+|-++.
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999987 579999999999999887 5778999999765 3 33444567788887765
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.06 E-value=6.4e-07 Score=92.27 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=115.6
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGGTEK-VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ 291 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~ 291 (764)
..++.+.|.-..+.-+++-++.|..|| .+-|+|.++++. ..+...-+.|.++..+++|++++++.....|.+.|+.++
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 346777788888888888899999999 899999987764 445556789999999999999999999999999999999
Q ss_pred eeeEEEeeecCceEEEEEcCCCCEEEEecCCC----cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc
Q 046871 292 RCIHSYAVHTDSVWALASTPTFSHVYSGGRDL----SLYLTDLATRESLLLCTGEHPILQLALHDDN 354 (764)
Q Consensus 292 ~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~ 354 (764)
+....=+...+-|+.++|||+++++|-+--+| .|+++|+.+++.........-=.+-+|.||+
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence 86555555567799999999999999776655 6899999998887766655545566788887
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=3e-07 Score=92.55 Aligned_cols=209 Identities=13% Similarity=0.090 Sum_probs=142.8
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEeCC--CCceeE--EeccCCcCeEEEEEcCCCCEEEEEeC-CCcEE
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGGTE---KVVRVWDPR--TGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSS-DSMIR 284 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs~d---g~I~iwd~~--~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~-Dg~I~ 284 (764)
.....+..+-|+|+|+++.|.++..+ |.|..|.+. +|+... .......+-..++++++|++++++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34456778899999999999887554 666666554 354322 22222334478999999999998875 57899
Q ss_pred EEeCCC-CeeeE--EEeeecCc----------eEEEEEcCCCCEEEEecC-CCcEEEEeCCCCeEEE----EeecCCCeE
Q 046871 285 LWDLGQ-QRCIH--SYAVHTDS----------VWALASTPTFSHVYSGGR-DLSLYLTDLATRESLL----LCTGEHPIL 346 (764)
Q Consensus 285 iwdl~~-~~~~~--~l~~h~~~----------V~~l~~spd~~~l~sgs~-Dg~I~iwd~~~~~~~~----~~~~~~~V~ 346 (764)
++-++. |.... .+..|.+. +....+.|++++|++.+- -..|.+|++..|.... .++....-.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 999865 43222 22235555 888999999999998764 2479999999776443 234566789
Q ss_pred EEEeeCCc--eEEEeC-CCcEEEeeCCCC-CCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCce
Q 046871 347 QLALHDDN--IWVATT-DSSVHRWPAEGR-NPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIV 422 (764)
Q Consensus 347 ~l~~spd~--l~~~s~-dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~ 422 (764)
.|.|+|++ .++.++ +++|-+|..+.. .....++. +. .....+.|..+..
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~--------------------------i~-tlP~dF~g~~~~a 247 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT--------------------------ID-TLPEDFTGTNWAA 247 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee--------------------------ec-cCccccCCCCcee
Confidence 99999999 555554 899999999874 22222221 11 1112366777888
Q ss_pred EeEEecCCcEEEEeeC-CCcEEEEEcc
Q 046871 423 QHEILNNRRHVLTKDA-AGSVKLWEIT 448 (764)
Q Consensus 423 ~~~~s~dg~~l~t~s~-dG~V~lWdi~ 448 (764)
.+.+++|||+|.++.. ...|.++.+.
T Consensus 248 aIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 248 AIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999999999977654 3367777765
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.7e-08 Score=111.85 Aligned_cols=213 Identities=12% Similarity=0.057 Sum_probs=129.1
Q ss_pred CCeeEEEeecccccCCCcEEEEEeC-CC--cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEE-EEeCCCc--EE
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSR-DG--TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLV-SCSSDTT--LK 108 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~-Dg--~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~-s~s~Dg~--V~ 108 (764)
..+.+.+| ||||+.|+..+. ++ .|.+||+.+++.+.+..+. .......|+||+ .|+ +.+.++. |.
T Consensus 218 ~~~~~p~w-----SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 218 EPLMSPAW-----SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred CcccCceE-----CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 34556666 899998887653 33 5888898875433333333 334568999997 454 5566675 66
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe-CCC--eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG-LGA--EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~-~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+||+. ++ ....+..+.......+|+ ++++.++..+ .++ .|.++|+.++...
T Consensus 290 ~~dl~-tg-~~~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~----------------------- 343 (448)
T PRK04792 290 VVDIA-TK-ALTRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVS----------------------- 343 (448)
T ss_pred EEECC-CC-CeEECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEE-----------------------
Confidence 77763 23 344455555566778999 5666655443 344 4555666543100
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEeccCCcCe
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE-K--VVRVWDPRTGSKTIKLRGHTDNI 262 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d-g--~I~iwd~~~~~~~~~l~~h~~~V 262 (764)
.+..........+|+|+|++|+..+.+ + .|.++|+.+++.. .+... ...
T Consensus 344 --------------------------~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d 395 (448)
T PRK04792 344 --------------------------RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLD 395 (448)
T ss_pred --------------------------EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCC
Confidence 010111122346899999998876543 3 4666788877643 33322 122
Q ss_pred EEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 263 RSLLLDSTGRYCLSGSSD-S--MIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~D-g--~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
....|+|||++|+..+.+ + .+++++. +++....+..+.+.+...+|+|
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 345799999988765543 3 3777787 5666666766666677778876
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=3.6e-09 Score=102.89 Aligned_cols=250 Identities=16% Similarity=0.292 Sum_probs=166.4
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC---Cccceeecccc------------cceeEEEEeCC-C
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV---GSCSATFESHV------------DWVNDAVLVGD-N 96 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~---~~~~~~l~~h~------------~~V~~v~~s~d-~ 96 (764)
.....|+++.| ...|.||++|...|.|.++.-+... .+....|++|. ..|+.+.|..+ +
T Consensus 24 tead~ItaVef-----d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 24 TEADKITAVEF-----DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred cccceeeEEEe-----ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 34567999999 5778999999999999999876533 23344466663 46888999866 3
Q ss_pred --eEEEEeCCCcEEEecCCCC------------------Cee-----------------------eeec-cccCCceEEE
Q 046871 97 --TLVSCSSDTTLKTWNCSSD------------------GTC-----------------------IRTL-RQHSDYVTCL 132 (764)
Q Consensus 97 --~l~s~s~Dg~V~vWd~~~~------------------~~~-----------------------~~~l-~~h~~~V~~l 132 (764)
.++..+.|.+|++|.+... +.. .+.. ..|..-|.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 6888889999999986322 000 0001 2366667888
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcccee
Q 046871 133 AAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIA 212 (764)
Q Consensus 133 ~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 212 (764)
.|. .+...++++. |=.|.+|+++-.. +...+.+... ..
T Consensus 179 S~N-sD~et~lSaD-dLrINLWnl~i~D-----------------------------------~sFnIVDiKP-----~n 216 (460)
T COG5170 179 SFN-SDKETLLSAD-DLRINLWNLEIID-----------------------------------GSFNIVDIKP-----HN 216 (460)
T ss_pred eec-Cchheeeecc-ceeeeeccccccC-----------------------------------CceEEEeccC-----cc
Confidence 888 6777777764 5679999886420 0111111100 01
Q ss_pred ccCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce------eEE----------eccCCcCeEEEEEcCCCCEEE
Q 046871 213 AKGHKESVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSK------TIK----------LRGHTDNIRSLLLDSTGRYCL 275 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~------~~~----------l~~h~~~V~~l~~spdg~~l~ 275 (764)
+..-..-|++..|+|. .+.+...+..|.|++-|++.... +.. +.+-...|..+.|+++|++++
T Consensus 217 meeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl 296 (460)
T COG5170 217 MEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL 296 (460)
T ss_pred HHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE
Confidence 1112344778888884 45566677889999999984321 111 122335788899999999998
Q ss_pred EEeCCCcEEEEeCCC-CeeeEEEeeec------------Cce---EEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 276 SGSSDSMIRLWDLGQ-QRCIHSYAVHT------------DSV---WALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 276 sgs~Dg~I~iwdl~~-~~~~~~l~~h~------------~~V---~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
+-+ =-+|+|||.+. ..++.++..|. +.| ..+.|+-|.+.+.+|+..+..-+|-.
T Consensus 297 sRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 297 SRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred Eec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 765 46899999976 45788876654 223 34678888889999998887777764
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.02 E-value=4.2e-08 Score=93.93 Aligned_cols=244 Identities=14% Similarity=0.065 Sum_probs=159.9
Q ss_pred eEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCC
Q 046871 39 NCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 39 ~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~ 116 (764)
..|.|.|.+|-....+||.||..|...+|...+.++. ......|...|.-+.-.-+ . .+..++.|.++++.++....
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h-~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH-LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccc-eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 4456666655556679999999999999999875432 3333444443332211112 2 57888999999999874322
Q ss_pred eeeeeccccCC--ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 117 TCIRTLRQHSD--YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 117 ~~~~~l~~h~~--~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
.... .|.. .+..++++ +++.++++.+....|..|.+.......
T Consensus 150 -~~~~--~h~~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~------------------------------- 194 (344)
T KOG4532|consen 150 -NKFA--VHNQNLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYI------------------------------- 194 (344)
T ss_pred -ccce--eeccccceeeeEEc-CCCceEEEecCCCcceEEEeCCcccee-------------------------------
Confidence 1111 1322 37889999 889999999999999999997631110
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----EeccCCcCeEEEEEcC
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI-----KLRGHTDNIRSLLLDS 269 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~sp 269 (764)
.........+.-.+..|+.....+|++..||.+.|||++...... +-..|.+.++.+.|++
T Consensus 195 --------------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 195 --------------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred --------------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence 001122234445678899988999999999999999998764332 2235889999999998
Q ss_pred CCC--EEEEEeCCCcEEEEeCCCCeeeEEEee-------ec-CceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 270 TGR--YCLSGSSDSMIRLWDLGQQRCIHSYAV-------HT-DSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 270 dg~--~l~sgs~Dg~I~iwdl~~~~~~~~l~~-------h~-~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
-|. +|+..-.-+.+.+.|+++++..+.+.. |. ..|..-.|+.++.-+.+.+.+ .+.-|++.+.
T Consensus 261 ~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 261 YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 664 344444567799999999876665542 22 226666677666655555433 3445555443
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.5e-06 Score=91.16 Aligned_cols=263 Identities=12% Similarity=0.057 Sum_probs=158.0
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE-EEEe---------CCCcEEEecCCCCCeeeeecccc-----
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL-VSCS---------SDTTLKTWNCSSDGTCIRTLRQH----- 125 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l-~s~s---------~Dg~V~vWd~~~~~~~~~~l~~h----- 125 (764)
+.|.+.|..+ .+.+.++..-..+- .+ ++||+ .| ++.+ .+..|.+||. .+.+.+..+..-
T Consensus 27 ~~v~ViD~~~--~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCC--CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchh
Confidence 8999999988 66666666433332 24 89997 44 4445 5789999997 556666665431
Q ss_pred --CCceEEEEEecCCCcEEEEEe-C-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccc
Q 046871 126 --SDYVTCLAAAEKNSNIVASGG-L-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201 (764)
Q Consensus 126 --~~~V~~l~~~p~~~~~lasg~-~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 201 (764)
......++++ +++++++... . +..|.+.|+.+..........
T Consensus 102 ~~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--------------------------------- 147 (352)
T TIGR02658 102 LVGTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--------------------------------- 147 (352)
T ss_pred hccCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC---------------------------------
Confidence 2233477888 7888887766 3 689999999875332211000
Q ss_pred ccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEEeccCCcCeEEE-EEcC-CCCEEEEEe
Q 046871 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL-LLDS-TGRYCLSGS 278 (764)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l-~~sp-dg~~l~sgs 278 (764)
.+. ..+.... -..+..+.||..+.. -..+|....=. ...+.+-..++..= .|.+ +|+++++..
T Consensus 148 ----~~~--~vy~t~e--~~~~~~~~Dg~~~~v~~d~~g~~~~~~------~~vf~~~~~~v~~rP~~~~~dg~~~~vs~ 213 (352)
T TIGR02658 148 ----DCY--HIFPTAN--DTFFMHCRDGSLAKVGYGTKGNPKIKP------TEVFHPEDEYLINHPAYSNKSGRLVWPTY 213 (352)
T ss_pred ----CCc--EEEEecC--CccEEEeecCceEEEEecCCCceEEee------eeeecCCccccccCCceEcCCCcEEEEec
Confidence 000 0000000 011122233333221 12222211000 00011100000000 3455 888887776
Q ss_pred CCCcEEEEeCCC-----CeeeEEEee-------ecCceEEEEEcCCCCEEEEec----------CCCcEEEEeCCCCeEE
Q 046871 279 SDSMIRLWDLGQ-----QRCIHSYAV-------HTDSVWALASTPTFSHVYSGG----------RDLSLYLTDLATRESL 336 (764)
Q Consensus 279 ~Dg~I~iwdl~~-----~~~~~~l~~-------h~~~V~~l~~spd~~~l~sgs----------~Dg~I~iwd~~~~~~~ 336 (764)
. |+|.+.|+.. .+....+.. ..+.+.-++++|+++.++... ..+.|.++|..+++.+
T Consensus 214 e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 214 T-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred C-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 6 9999999643 233333221 223345599999999988743 1257999999999999
Q ss_pred EEeecCCCeEEEEeeCCc---eEEEe-CCCcEEEeeCCCCCCceee
Q 046871 337 LLCTGEHPILQLALHDDN---IWVAT-TDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 337 ~~~~~~~~V~~l~~spd~---l~~~s-~dg~I~iwd~~~~~~~~~~ 378 (764)
..+.....+..++++||+ +++.. .++.|.++|..+++.++.+
T Consensus 293 ~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 293 RKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988899999999998 56555 4788999999999888777
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=6.5e-07 Score=93.76 Aligned_cols=267 Identities=11% Similarity=0.039 Sum_probs=160.0
Q ss_pred CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe----------CCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 105 TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG----------LGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 105 g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++|.+.|. ...+.+.++..-..+- .+ ++ ++++.++++. .+..|.+||..+.+.........
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~G~~P~-~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~----- 97 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDGGFLPN-PV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE----- 97 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEccCCCc-ee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-----
Confidence 88999996 4567777665443333 34 78 5666665554 47899999998864332211000
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCcee
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-T-EKVVRVWDPRTGSKT 252 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~-dg~I~iwd~~~~~~~ 252 (764)
.+. .........++++|||++|++.. . +..|.+.|+.+++.+
T Consensus 98 ----------------------------------~p~--~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 98 ----------------------------------GPR--FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred ----------------------------------Cch--hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence 000 00122334788999999998765 3 789999999999998
Q ss_pred EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cee-eEEEe-eec--Cce-EEEEEcC-CCCEEEEecCCCcE
Q 046871 253 IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QRC-IHSYA-VHT--DSV-WALASTP-TFSHVYSGGRDLSL 325 (764)
Q Consensus 253 ~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~~-~~~l~-~h~--~~V-~~l~~sp-d~~~l~sgs~Dg~I 325 (764)
.++.- .+...-...+++..+ +-+.||......+.+ ++. ..+.. .|. .++ ..-.|.+ ++++++.... |+|
T Consensus 142 ~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V 217 (352)
T TIGR02658 142 RMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKI 217 (352)
T ss_pred EEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeE
Confidence 88764 222222222222222 122355544433322 221 11111 011 110 0003445 8888877766 999
Q ss_pred EEEeCCCCe-----EEEEeec--------CCCeEEEEeeCCc--eEEEe----------CCCcEEEeeCCCCCCceeeec
Q 046871 326 YLTDLATRE-----SLLLCTG--------EHPILQLALHDDN--IWVAT----------TDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 326 ~iwd~~~~~-----~~~~~~~--------~~~V~~l~~spd~--l~~~s----------~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.+.|+.... ....+.. ...+.-+++++++ ++++. ..+.|.++|..+++.+..+..
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 999965432 2222211 2234459999998 66643 225799999988877766542
Q ss_pred CCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc-EEEEee-CCCcEEEEEccccEEeeecC
Q 046871 381 GGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR-HVLTKD-AAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 381 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~-~l~t~s-~dG~V~lWdi~tg~~i~~~~ 457 (764)
...+..+++++|++ +|.+.. .++.|.+.|+.+++.+++..
T Consensus 298 -------------------------------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 298 -------------------------------------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -------------------------------------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 22345678899999 777665 68899999999999998873
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.5e-07 Score=97.01 Aligned_cols=302 Identities=14% Similarity=0.082 Sum_probs=188.2
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC-----------CCcEEEecCCCC
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS-----------DTTLKTWNCSSD 115 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~-----------Dg~V~vWd~~~~ 115 (764)
|||-|.||+|--.-| |.+|--.+ ...++.|. |. .|.-+.|||.. +|++-+. ...++|||+ .+
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~--f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI-~t 291 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGES--FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI-AT 291 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCcc--HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc-cc
Confidence 399999999987764 77996554 33444443 33 47889999985 8887653 256999998 45
Q ss_pred Ceeeeecccc--CCce-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 116 GTCIRTLRQH--SDYV-TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 116 ~~~~~~l~~h--~~~V-~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
|...+.+... ...+ .-+.|+ .|+.++|--..+ .|.||+.........
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~~-sisIyEtpsf~lld~---------------------------- 341 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTGN-SISIYETPSFMLLDK---------------------------- 341 (698)
T ss_pred cchhcceeccCCCccccceEEec-cCCceeEEeccc-eEEEEecCceeeecc----------------------------
Confidence 7777666542 2222 245688 788899877765 589998764211100
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEeccCCcCeEEEEE
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE-----KVVRVWDPRTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 267 (764)
..-.-..|....|+|.+++||.-... ..+.+..+.+++.++.-.-|.-.=-.+.|
T Consensus 342 --------------------Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 342 --------------------KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred --------------------cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence 01123457778888988877754332 24666667677666655544433345667
Q ss_pred cCCCCEEEEEeC----------CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC---CCcEEEEeCCC-C
Q 046871 268 DSTGRYCLSGSS----------DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR---DLSLYLTDLAT-R 333 (764)
Q Consensus 268 spdg~~l~sgs~----------Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~---Dg~I~iwd~~~-~ 333 (764)
-.+|.+|+.--. =..+-|+.++.....-..-.-...|...+|-|.|..+++-+. ..++.+|.+.+ .
T Consensus 402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 778888764321 112445555443322222234567889999999988875543 35788888873 2
Q ss_pred eEEEEee--cCCCeEEEEeeCCc--eEEE---eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCccc
Q 046871 334 ESLLLCT--GEHPILQLALHDDN--IWVA---TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSS 406 (764)
Q Consensus 334 ~~~~~~~--~~~~V~~l~~spd~--l~~~---s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 406 (764)
.....+. .....+.+.|+|.| ++++ +..|.+..+|........
T Consensus 482 ~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~------------------------------ 531 (698)
T KOG2314|consen 482 KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD------------------------------ 531 (698)
T ss_pred CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh------------------------------
Confidence 2211111 23457889999999 3333 347888888876421111
Q ss_pred CCCCCCccccCCCCceEeEEecCCcEEEEeeCCCc
Q 046871 407 RFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGS 441 (764)
Q Consensus 407 ~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~ 441 (764)
...+.+...+.+.|.|.|||++|+++-+.
T Consensus 532 ------~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 532 ------TASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred ------ccCccccccccceECCCCCEEEEeeehhh
Confidence 11223455667889999999999987553
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=5.8e-07 Score=108.78 Aligned_cols=252 Identities=12% Similarity=0.112 Sum_probs=157.0
Q ss_pred EEEeecccccC-CCcEEEEEeCCCcEEEEeCCCCCCccceeecc--------------cccceeEEEEeCCC-eEEEE-e
Q 046871 40 CLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLADDVGSCSATFES--------------HVDWVNDAVLVGDN-TLVSC-S 102 (764)
Q Consensus 40 ~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~--------------h~~~V~~v~~s~d~-~l~s~-s 102 (764)
.+++ ++ ++.++++-+.++.|++||... ..+..+.+ +-.....+++.+++ .|+.+ .
T Consensus 572 gvav-----d~~~g~lyVaDs~n~rI~v~d~~G---~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 572 KLAI-----DLLNNRLFISDSNHNRIVVTDLDG---NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred eEEE-----ECCCCeEEEEECCCCeEEEEeCCC---CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence 4566 44 455666667788999999864 22333322 11235778898774 55554 4
Q ss_pred CCCcEEEecCCCCCeeeeecccc-----------------CCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCC
Q 046871 103 SDTTLKTWNCSSDGTCIRTLRQH-----------------SDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKS 165 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~~~~~l~~h-----------------~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~ 165 (764)
..+.|+++|+.. + .+.++.+- -.....++++|.++.++++...++.|++||..++.....
T Consensus 644 ~n~~Ir~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~- 720 (1057)
T PLN02919 644 ENHALREIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF- 720 (1057)
T ss_pred CCceEEEEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE-
Confidence 457799998632 2 33333110 123468899955777888888889999999876421100
Q ss_pred CCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEE
Q 046871 166 GDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL-LVSGGTEKVVRVW 244 (764)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~-l~sgs~dg~I~iw 244 (764)
. ..+...... +.. .....-.....|+++|+++. +++-+.++.|++|
T Consensus 721 ------------~---------------G~G~~~~~~----g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 721 ------------S---------------GDGYERNLN----GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred ------------e---------------cCCccccCC----CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 0 000000000 000 00011234568999999884 4555667899999
Q ss_pred eCCCCceeEEecc-------------C--------CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-----
Q 046871 245 DPRTGSKTIKLRG-------------H--------TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA----- 298 (764)
Q Consensus 245 d~~~~~~~~~l~~-------------h--------~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~----- 298 (764)
|+.++.......+ + -.....++++++|+.+++-+.++.|++||..++.......
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 9987653211100 0 1124588999999988888899999999998776543321
Q ss_pred --------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE
Q 046871 299 --------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 299 --------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
..-.....|+++++|+.+++-+.++.|++||+.+++.
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112467899999999888888899999999988764
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=3.7e-06 Score=99.99 Aligned_cols=279 Identities=15% Similarity=0.110 Sum_probs=178.8
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEE----eCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRW----SLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iW----d~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
..+.|.++.+. ++...|+.+..+|.|.+. +......+.+. .-...|.+++||||+ .|+.+..++++.
T Consensus 74 ~~~~ivs~~yl-----~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYL-----ADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEec-----cCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEE
Confidence 34678888884 677888888899999999 55553333333 346689999999997 777777788776
Q ss_pred EecCCC------------CC----------eeeeeccc------------------------cCCceEEEEEecCCCcEE
Q 046871 109 TWNCSS------------DG----------TCIRTLRQ------------------------HSDYVTCLAAAEKNSNIV 142 (764)
Q Consensus 109 vWd~~~------------~~----------~~~~~l~~------------------------h~~~V~~l~~~p~~~~~l 142 (764)
+-+-.- -+ +....|+| +.+.-..|+|- .|+.+|
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yF 224 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYF 224 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEE
Confidence 643100 00 00001100 23344577887 789999
Q ss_pred EEEeC------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC
Q 046871 143 ASGGL------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216 (764)
Q Consensus 143 asg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 216 (764)
|+.+. -+.|++|+-+... . .....-
T Consensus 225 AVss~~~~~~~~R~iRVy~ReG~L-~------------------------------------------------stSE~v 255 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSREGEL-Q------------------------------------------------STSEPV 255 (928)
T ss_pred EEEEEEcCCCceeEEEEECCCceE-E------------------------------------------------eccccC
Confidence 88765 2578888876310 0 001111
Q ss_pred CCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEec----cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 217 KESVYALAMNDSGNLLVSGGT---EKVVRVWDPRTGSKTIKLR----GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~---dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
.+--.+++|-|.|++||+... ...|.+|. ++|-.-..|. .....|..|.|++|+..|+....|. |.+|-..
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 222347899999999988754 35677777 4554444332 3456899999999999999877655 9999987
Q ss_pred CCe--eeEEEeee-cCceEEEEEcCCC-CEEEEecCCCcEEEEeC----CCC----------------eEE---------
Q 046871 290 QQR--CIHSYAVH-TDSVWALASTPTF-SHVYSGGRDLSLYLTDL----ATR----------------ESL--------- 336 (764)
Q Consensus 290 ~~~--~~~~l~~h-~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~----~~~----------------~~~--------- 336 (764)
+.. ..+.+... ...+..+.|+|.. ..|...+.+|.+..+++ ..+ ..+
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC
Confidence 653 33334322 2334558898843 44556665566654432 111 111
Q ss_pred -------EEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 337 -------LLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 337 -------~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
..+....+|.+++|+++. +++-..||.|.+|.....
T Consensus 414 VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 414 VPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 112235679999999998 999999999999986554
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.8e-08 Score=108.52 Aligned_cols=224 Identities=17% Similarity=0.188 Sum_probs=157.3
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCC--ceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCC
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD--YVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~--~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~ 159 (764)
.+++..+..+|.| -++.++.-| +.+-|+.......+-+. |.. .|-.+.|++. ...+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 4578888888887 566676655 45667656565555443 332 3556677742 2333344444455678887542
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTE 238 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~d 238 (764)
. .......+.+|...|+.+.|+|+ ...+++++.|
T Consensus 102 s---------------------------------------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvd 136 (1081)
T KOG0309|consen 102 S---------------------------------------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD 136 (1081)
T ss_pred C---------------------------------------------ccceEEEEecCccceeccccCCCCCcceeecccc
Confidence 0 01222346789999999999984 5678999999
Q ss_pred CeEEEEeCCCCc-eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeeEEEeeecCceEEEEEcC-CCCE
Q 046871 239 KVVRVWDPRTGS-KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ-RCIHSYAVHTDSVWALASTP-TFSH 315 (764)
Q Consensus 239 g~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~-~~~~~l~~h~~~V~~l~~sp-d~~~ 315 (764)
..+..||+++.. .+..+..-......+.|+-....+++.+....|++||++.| .++..+++|...|+.++|.. ....
T Consensus 137 t~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~ 216 (1081)
T KOG0309|consen 137 TYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE 216 (1081)
T ss_pred ccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh
Confidence 999999999864 45555544556678899886666677778888999999865 57888999999999999864 3456
Q ss_pred EEEecCCCcEEEEeCCCC--eEEEEeecCCCeEEEEeeCCc
Q 046871 316 VYSGGRDLSLYLTDLATR--ESLLLCTGEHPILQLALHDDN 354 (764)
Q Consensus 316 l~sgs~Dg~I~iwd~~~~--~~~~~~~~~~~V~~l~~spd~ 354 (764)
+.+++.||+|+.||.... +.........+|..-.+-|-+
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred hcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 789999999999998643 344555566777777777765
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=1.1e-06 Score=106.52 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=153.9
Q ss_pred eEEEEeCC-C-eEEEEeCCCcEEEecCCCCCeeeeeccc--------------cCCceEEEEEecCCCcEEEEE-eCCCe
Q 046871 88 NDAVLVGD-N-TLVSCSSDTTLKTWNCSSDGTCIRTLRQ--------------HSDYVTCLAAAEKNSNIVASG-GLGAE 150 (764)
Q Consensus 88 ~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~--------------h~~~V~~l~~~p~~~~~lasg-~~dg~ 150 (764)
..+++.+. + .+++-+.++.|++||. .+..+..+.. +-.....+++. ++++.|+++ ...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~--~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL--DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC--CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEEEEeCCCce
Confidence 35777764 5 5666667888999996 3444433322 11235788898 556655544 44578
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SG 229 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g 229 (764)
|+++|+.++........ +.. ........... .. .-..-+.++++| ++
T Consensus 648 Ir~id~~~~~V~tlag~----------------------------G~~-g~~~~gg~~~~--~~-~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 648 LREIDFVNETVRTLAGN----------------------------GTK-GSDYQGGKKGT--SQ-VLNSPWDVCFEPVNE 695 (1057)
T ss_pred EEEEecCCCEEEEEecc----------------------------Ccc-cCCCCCChhhh--Hh-hcCCCeEEEEecCCC
Confidence 99999876421110000 000 00000000000 00 011235789999 56
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEecc---------C------CcCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCee
Q 046871 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRG---------H------TDNIRSLLLDSTGRYCL-SGSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~---------h------~~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl~~~~~ 293 (764)
.++++.+.++.|++||..++... .+.+ + -.....|+++|++++|+ +-+.++.|++||+.++..
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 66777778899999998876542 2211 1 12346799999998554 555678999999987653
Q ss_pred eEEEe-------------ee--------cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC----------
Q 046871 294 IHSYA-------------VH--------TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE---------- 342 (764)
Q Consensus 294 ~~~l~-------------~h--------~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---------- 342 (764)
..... .+ -.....++++++|..+++-..++.|++||..++.........
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 21110 00 112468899999998888889999999999887765443211
Q ss_pred ----CCeEEEEeeCCc-eEEE-eCCCcEEEeeCCCCCC
Q 046871 343 ----HPILQLALHDDN-IWVA-TTDSSVHRWPAEGRNP 374 (764)
Q Consensus 343 ----~~V~~l~~spd~-l~~~-s~dg~I~iwd~~~~~~ 374 (764)
.....+++++++ ++++ +.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 246789999999 5554 5678999999988764
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=2.8e-07 Score=88.43 Aligned_cols=254 Identities=8% Similarity=-0.043 Sum_probs=166.8
Q ss_pred eCCCcEEEEeCCCCCCccceeecccccceeEEEEeC------CCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEE
Q 046871 59 SRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVG------DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCL 132 (764)
Q Consensus 59 s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~------d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l 132 (764)
++...+-+|++.+.....+...+ .+.|.| +++|+.++.-|...+|.+.......+....|...|.-+
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 45566888888764322333332 344544 35899999999999999865555555555555443322
Q ss_pred E-EecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 133 A-AAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 133 ~-~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
. +. ...--+..++.|+++++.+++.....
T Consensus 122 ~r~c-d~~~~~~i~sndht~k~~~~~~~s~~------------------------------------------------- 151 (344)
T KOG4532|consen 122 KRYC-DLKFPLNIASNDHTGKTMVVSGDSNK------------------------------------------------- 151 (344)
T ss_pred hhhc-ccccceeeccCCcceeEEEEecCccc-------------------------------------------------
Confidence 1 11 22445667788999999998753211
Q ss_pred eccCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeE--EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 212 AAKGHK--ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-SKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 212 ~~~~~~--~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
...|. -.+.+++++++++++++.+....|..|.+... +.+. .....++.-.+..|+.....+|+++.||++.||
T Consensus 152 -~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 -FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred -ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 01111 23788999999999999999999999988653 2222 233445566788899999999999999999999
Q ss_pred eCCCCeeeE-----EEeeecCceEEEEEcCCC--CEEEEecCCCcEEEEeCCCCeEEEEeec--------C-CCeEEEEe
Q 046871 287 DLGQQRCIH-----SYAVHTDSVWALASTPTF--SHVYSGGRDLSLYLTDLATRESLLLCTG--------E-HPILQLAL 350 (764)
Q Consensus 287 dl~~~~~~~-----~l~~h~~~V~~l~~spd~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--------~-~~V~~l~~ 350 (764)
|++...... +-..|.+.+..+.|++.| .+|+-.-.-+.+.+.|++++...+.+.- . ..|..-+|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 998754322 223588999999999855 3455555567899999998876554431 1 23666677
Q ss_pred eCCc--eEEEeCCCcEEEeeCCC
Q 046871 351 HDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 351 spd~--l~~~s~dg~I~iwd~~~ 371 (764)
+.++ +.+++++ .+.-|++.+
T Consensus 311 ~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 311 NNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCCCcccccccch-hhheeeccc
Confidence 7666 5555443 344455543
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=1.4e-06 Score=95.27 Aligned_cols=271 Identities=10% Similarity=0.050 Sum_probs=162.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeecccc--c--------ceeE-EEEeCCCeEEEEeCCCcEEEecCCCCCeeee
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHV--D--------WVND-AVLVGDNTLVSCSSDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~--~--------~V~~-v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~ 120 (764)
+..+++++.+|.|..+|..++ +.+-...... . .+.+ +.. .++.++.++.++.+..+|. .+++.+-
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~-~tG~~~W 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTG--KEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNA-EDGEVAW 144 (394)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEEC-CCCCCcc
Confidence 568888888999999999884 3333322111 0 1111 111 2457788888999999996 4566554
Q ss_pred eccccCCceEE-EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccc
Q 046871 121 TLRQHSDYVTC-LAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSIS 199 (764)
Q Consensus 121 ~l~~h~~~V~~-l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 199 (764)
...... .+.+ .... +..++.+..++.+..+|..+++..-.....
T Consensus 145 ~~~~~~-~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------------------- 189 (394)
T PRK11138 145 QTKVAG-EALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLD------------------------------- 189 (394)
T ss_pred cccCCC-ceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCC-------------------------------
Confidence 443322 2221 1222 456667778899999999886433211000
Q ss_pred ccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc-------CeEEEEEcC--C
Q 046871 200 AHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD-------NIRSLLLDS--T 270 (764)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-------~V~~l~~sp--d 270 (764)
. ..........++ .. +..++.++.+|.+..+|..+|+.+.+...... ....+..+| .
T Consensus 190 -------~-~~~~~~~~~sP~----v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 190 -------V-PSLTLRGESAPA----TA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred -------C-CcccccCCCCCE----EE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 0 000001111111 11 23567777889999999999987766532110 011111222 2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec--CCCeEEE
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG--EHPILQL 348 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~~l 348 (764)
+..++.++.+|.+..+|+.+|+.+..... .....+.. .+..++.++.+|.+..+|..+++.+..... .......
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 55677788899999999999987765432 11112222 456788888999999999999987654432 1223333
Q ss_pred EeeCCceEEEeCCCcEEEeeCCCCCCceeee
Q 046871 349 ALHDDNIWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 349 ~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
.+..+.+++++.+|.|++.|..+++.+....
T Consensus 332 ~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 332 VLYNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 4444459999999999999999987655443
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=7e-06 Score=82.83 Aligned_cols=274 Identities=11% Similarity=0.157 Sum_probs=170.2
Q ss_pred CCcEEEEeCCCCCCcc-ceeecccccceeEEEEeCCC-eEEEEeC---CCcEEEecCCCC-Ceeee--eccccCCceEEE
Q 046871 61 DGTLKRWSLADDVGSC-SATFESHVDWVNDAVLVGDN-TLVSCSS---DTTLKTWNCSSD-GTCIR--TLRQHSDYVTCL 132 (764)
Q Consensus 61 Dg~I~iWd~~~~~~~~-~~~l~~h~~~V~~v~~s~d~-~l~s~s~---Dg~V~vWd~~~~-~~~~~--~l~~h~~~V~~l 132 (764)
+.-|.+|++++..++. ...+-.+.+.++-++|++++ .|.++-. +|.|-.|.++.. ++... .......+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4679999998544432 22334567788889999997 6666654 477888877543 43321 111122333778
Q ss_pred EEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 133 AAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 133 ~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
+++ +++++++++.. .|.|.++-++....+...... ......+ ..
T Consensus 95 svd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--------------------------------~~h~g~~--p~ 139 (346)
T COG2706 95 SVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--------------------------------VKHTGSG--PH 139 (346)
T ss_pred EEC-CCCCEEEEEEccCceEEEEEcccCCccccceee--------------------------------eecCCCC--CC
Confidence 888 77888887765 578999988653111110000 0000000 00
Q ss_pred eccCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeE----EeccCCcCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 046871 212 AAKGHKESVYALAMNDSGNLLVSGGT-EKVVRVWDPRTGSKTI----KLRGHTDNIRSLLLDSTGRYCLSGSS-DSMIRL 285 (764)
Q Consensus 212 ~~~~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~~~~~~~----~l~~h~~~V~~l~~spdg~~l~sgs~-Dg~I~i 285 (764)
.......+.+..+.|++++|++.+- --.|.+|++..|+... .+ .....-+.|.|+|++++..+.+. +++|-+
T Consensus 140 -~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 140 -ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred -ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 0111222678889999999988753 2368999999876432 22 23456799999999999876664 899999
Q ss_pred EeCCCC-e---eeEEEee------ecCceEEEEEcCCCCEEEEecC-CCcEEEEeCCCC-eEEEEee----cCCCeEEEE
Q 046871 286 WDLGQQ-R---CIHSYAV------HTDSVWALASTPTFSHVYSGGR-DLSLYLTDLATR-ESLLLCT----GEHPILQLA 349 (764)
Q Consensus 286 wdl~~~-~---~~~~l~~------h~~~V~~l~~spd~~~l~sgs~-Dg~I~iwd~~~~-~~~~~~~----~~~~V~~l~ 349 (764)
|..... . .++++.. ......+|..++||++|+++.+ ...|.++.+... ..+.... +........
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 998763 2 2333221 1234667888999999998865 347888877633 2232222 233467888
Q ss_pred eeCCc--eEEEeC-CCcEEEeeCCC
Q 046871 350 LHDDN--IWVATT-DSSVHRWPAEG 371 (764)
Q Consensus 350 ~spd~--l~~~s~-dg~I~iwd~~~ 371 (764)
+++++ |+++.. +..|.+|.++.
T Consensus 298 i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 298 INPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eCCCCCEEEEEccCCCcEEEEEEcC
Confidence 99988 555555 45788887753
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.90 E-value=3.5e-08 Score=95.81 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=133.0
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--CeEEEEeCCCcEEEecCCCCCeeeee-ccc
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--NTLVSCSSDTTLKTWNCSSDGTCIRT-LRQ 124 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~l~s~s~Dg~V~vWd~~~~~~~~~~-l~~ 124 (764)
|++.+.-++++-.+|.+.+-+......+..+.++.|.-..+-..|+.. +.+.+|+.|+.+..||+...++.+.. .+-
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 577788899999999999666555444556688999999998899854 48899999999999998645555443 677
Q ss_pred cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccC
Q 046871 125 HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQ 204 (764)
Q Consensus 125 h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 204 (764)
|...|.+|.-+|+...++++|+.|-.|++||.+....+..
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~---------------------------------------- 248 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF---------------------------------------- 248 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccc----------------------------------------
Confidence 9999999999999999999999999999999986422211
Q ss_pred CCCccceeccCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC--c---eeEEeccCCcCeEEEEEcCCCCEEEEE
Q 046871 205 SQGYVPIAAKGHKESVYALAMNDS--GNLLVSGGTEKVVRVWDPRTG--S---KTIKLRGHTDNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 205 ~~~~~~~~~~~~~~~V~~l~~sp~--g~~l~sgs~dg~I~iwd~~~~--~---~~~~l~~h~~~V~~l~~spdg~~l~sg 277 (764)
.....+.|+.+..+|. +..|+++-.+| .+|.+...+ + .....+.|.+-+..-.|.....+|+|+
T Consensus 249 --------~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 249 --------KAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred --------cCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 1122477888888883 22344433333 556665543 2 233445565555555554444567776
Q ss_pred e-CCCcEE-EEeC
Q 046871 278 S-SDSMIR-LWDL 288 (764)
Q Consensus 278 s-~Dg~I~-iwdl 288 (764)
+ .|+.++ +|-.
T Consensus 320 sFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 320 SFYDKKIRQLWLH 332 (339)
T ss_pred eccccceeeeeee
Confidence 5 355544 5543
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-07 Score=96.25 Aligned_cols=252 Identities=12% Similarity=0.071 Sum_probs=171.9
Q ss_pred ccccceeEEEEeCCCeEEEEeCCCcEEEecCCC-CC-eeeeeccccCCceEEEEEecCCCcEEEEEeC-CCeEEEEeCCC
Q 046871 82 SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS-DG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIEA 158 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~-~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~ 158 (764)
-|.+.|+.+.-.....+++++.||.++.|.-.. .+ +.+..+..|...|.+++.+ .++.++.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEeec
Confidence 377788887777777999999999999998532 12 3445567788889999988 88889999777 99999999986
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC----CEEEE
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG----NLLVS 234 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g----~~l~s 234 (764)
....... .+....+.+..+ .++ | .+-++
T Consensus 86 ~Dminmi----------------------------------------------KL~~lPg~a~wv-~sk-Gd~~s~IAVs 117 (558)
T KOG0882|consen 86 FDMINMI----------------------------------------------KLVDLPGFAEWV-TSK-GDKISLIAVS 117 (558)
T ss_pred cchhhhc----------------------------------------------ccccCCCceEEe-cCC-CCeeeeEEee
Confidence 3221110 000111111111 111 2 12233
Q ss_pred EeCCCeEEEEeCCCC--ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeeeEEEe--------
Q 046871 235 GGTEKVVRVWDPRTG--SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ------QRCIHSYA-------- 298 (764)
Q Consensus 235 gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~------~~~~~~l~-------- 298 (764)
.-.++.+.++|-... +....-.-|..+|..+.+++-+..+++....|.|.-|.... .+....++
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 346788999997654 33444456999999999999999999999999999998862 11111121
Q ss_pred -eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-----------C-----------------------C
Q 046871 299 -VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-----------E-----------------------H 343 (764)
Q Consensus 299 -~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-----------~-----------------------~ 343 (764)
-......++.|+|++..+.+-+.|..|+++++++|+.++.+.. . .
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 2234578999999999999999999999999999886654331 0 1
Q ss_pred CeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCC
Q 046871 344 PILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 344 ~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
.-+.++|...+ ++.-+.-=.|++.++.++...+.+....
T Consensus 278 ~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDE 317 (558)
T ss_pred ccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccch
Confidence 12455666666 3333333348899999988888776544
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.9e-06 Score=92.87 Aligned_cols=407 Identities=13% Similarity=0.120 Sum_probs=220.8
Q ss_pred CCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
...||++.|.-+.| +.+.+-|-|...+|.|.+|-+-.+..-....-....+-|.+++|..|| .++....||.|.
T Consensus 66 tLeGH~~sV~vvTW-----Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTW-----NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred hhccCcceEEEEEe-----ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 34599999999999 567788989999999999999875443333333456778999999987 788888888887
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC-------c--CCcCccccC
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM-------E--DDCSTGING 179 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~-------~--~~~~~~~~~ 179 (764)
|=.++.+.---+.+++. ....+.|+ +|...++.+-..|.+.++|.............. . ......+..
T Consensus 141 VGsvdGNRIwgKeLkg~--~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQ--LLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEeeccceecchhcchh--eccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 76653221111122221 12367788 677777777778999999987643221111000 0 000000000
Q ss_pred -CC----CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC---------eEEEEe
Q 046871 180 -SG----NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK---------VVRVWD 245 (764)
Q Consensus 180 -~~----~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg---------~I~iwd 245 (764)
.+ ..+.-..+......+...+............- ..-.|....|+++|..|+.++.+. .|.+|.
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 00 01111223333344444443333333222222 235688999999999999987643 566666
Q ss_pred CCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--------eeeEEEeeecCce-------------
Q 046871 246 PRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ--------RCIHSYAVHTDSV------------- 304 (764)
Q Consensus 246 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~--------~~~~~l~~h~~~V------------- 304 (764)
. -|+.+..++.....|++++|-..|-.++.+ .|+.|.+=+++-. ..+..++....+-
T Consensus 296 p-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek 373 (1189)
T KOG2041|consen 296 P-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEK 373 (1189)
T ss_pred c-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChh
Confidence 4 577888888888899999998777666665 4677776555421 1222222222222
Q ss_pred --------EEEEEcCCCCEEEEecCCCcEEEEeC-CCCeEEE---Eeec-----CCC---eEEEEeeCCc--eEEEeCCC
Q 046871 305 --------WALASTPTFSHVYSGGRDLSLYLTDL-ATRESLL---LCTG-----EHP---ILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 305 --------~~l~~spd~~~l~sgs~Dg~I~iwd~-~~~~~~~---~~~~-----~~~---V~~l~~spd~--l~~~s~dg 362 (764)
.+++|..+.-.|+.-..||.|.-++. ++...+. .+.. ... |.-.-..-++ ++.++ ..
T Consensus 374 ~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS-~e 452 (1189)
T KOG2041|consen 374 TVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIAS-EE 452 (1189)
T ss_pred hhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEec-cc
Confidence 33444444444444455555554421 1211111 1111 111 1111111222 34444 45
Q ss_pred cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC-ceEeEEecCCcEEEEeeCCCc
Q 046871 363 SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG-IVQHEILNNRRHVLTKDAAGS 441 (764)
Q Consensus 363 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~-i~~~~~s~dg~~l~t~s~dG~ 441 (764)
.+.+|.....+....+.+....... .|+-+.. .+|.... .......++.|... |..++.+ .++|+.+-..|.
T Consensus 453 ~~~iWhy~~pK~~s~l~~~k~rkeg--r~h~Ddt-p~ga~d~--~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~ 525 (1189)
T KOG2041|consen 453 RYFIWHYVLPKFNSVLAGVKIRKEG--RFHGDDT-PEGAQDR--TLEYSTKTLLGSKDPICALCIS--DKFLMVARESGG 525 (1189)
T ss_pred cEEEEEEeccchhhhhhhhhhcccc--cccCCCC-ccchhhc--eeeccceeeccCCCcceeeeec--ceEEEEEeccCc
Confidence 6889987665544333220000000 0111000 0110000 11112234455443 5455554 478999999999
Q ss_pred EEEEEccccEEeeec
Q 046871 442 VKLWEITRGVVVEDY 456 (764)
Q Consensus 442 V~lWdi~tg~~i~~~ 456 (764)
|.-+.+..+.+.+.|
T Consensus 526 I~rySl~nv~l~n~y 540 (1189)
T KOG2041|consen 526 IYRYSLNNVVLTNSY 540 (1189)
T ss_pred eEEEEecceeeeecc
Confidence 999999998888776
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6e-08 Score=99.17 Aligned_cols=258 Identities=15% Similarity=0.142 Sum_probs=179.0
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC-CCCccceeecccccceeEEEEeCCC-eEEEEeC-CCcEEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD-DVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS-DTTLKT 109 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~-~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~-Dg~V~v 109 (764)
-|++-|+-+.. .-.+++.+++.||.++.|.-.. ...+.+..+..|-..|.+++.+-++ .+.|.+. |..+++
T Consensus 7 mhrd~i~hv~~------tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 7 MHRDVITHVFP------TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred cccceeeeEee------ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 48888988877 3458999999999999997654 2245567778899999999999998 5667677 999999
Q ss_pred ecCCCCCeeeee--ccccCCceEEEEEecCCC--cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 110 WNCSSDGTCIRT--LRQHSDYVTCLAAAEKNS--NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 110 Wd~~~~~~~~~~--l~~h~~~V~~l~~~p~~~--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+|+.. -..+.. +..-.+.+.+ ..++.+. .+-++.-.++.|.++|-....+.
T Consensus 81 fDvEn-~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------------------- 135 (558)
T KOG0882|consen 81 FDVEN-FDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------------------- 135 (558)
T ss_pred EEeec-cchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------------
Confidence 99844 222222 2222222222 2221111 23334445788999987653211
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CceeEEe----
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT------GSKTIKL---- 255 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~------~~~~~~l---- 255 (764)
......-|..+|..+.+++.+..+++....|.|.-|.... .+....+
T Consensus 136 -----------------------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 136 -----------------------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred -----------------------cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 1122456889999999999999999999999999998762 1111222
Q ss_pred -----ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee-------------------------------
Q 046871 256 -----RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV------------------------------- 299 (764)
Q Consensus 256 -----~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~------------------------------- 299 (764)
........++.|+|+|..+.+-+.|..|++++..+++.++.+..
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 22345678999999999999999999999999998877665421
Q ss_pred -ecC-ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCe
Q 046871 300 -HTD-SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI 345 (764)
Q Consensus 300 -h~~-~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V 345 (764)
|.. .-+.+.|...+++|+-|+-=| |++.++.++...+.+.....|
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~i 319 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAI 319 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhh
Confidence 111 234567888888888776543 788888888887777654433
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.80 E-value=1.4e-06 Score=85.32 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=135.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeccCC---cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE
Q 046871 223 LAMNDSGNLLVSGGTEKVVRVWDPRTG--SKTIKLRGHT---DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY 297 (764)
Q Consensus 223 l~~sp~g~~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~---~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l 297 (764)
++.+.+|+.||.- .|..|.|=..++. ..+.+..-+. -.=+.++||||+..|+.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 4566788877765 5667766555433 2223332222 3457899999999999999999999999954 444444
Q ss_pred ee-------ecCceEEEEEcCC------CCEEEEecCCCcEEEEeCCCC-----eEEEEee----cCCCeEEEEeeCCc-
Q 046871 298 AV-------HTDSVWALASTPT------FSHVYSGGRDLSLYLTDLATR-----ESLLLCT----GEHPILQLALHDDN- 354 (764)
Q Consensus 298 ~~-------h~~~V~~l~~spd------~~~l~sgs~Dg~I~iwd~~~~-----~~~~~~~----~~~~V~~l~~spd~- 354 (764)
.. -...|..+.|.+- ...|+.-..+|.++-|-+..+ +....+. ....|.++.++|..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32 1245777777432 224666677888877765322 2222222 25689999999997
Q ss_pred -eEEEeCC-C----------cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCC---ccc--cC
Q 046871 355 -IWVATTD-S----------SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPN---FTI--PG 417 (764)
Q Consensus 355 -l~~~s~d-g----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~i--~g 417 (764)
|++|+.. . .+..|.+-++.+-...-....... .-.+ ....+..... ... ..
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~---~~~~---------~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI---TASS---------KRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc---cccc---------cccceeeccceeeeeccccC
Confidence 5555532 1 356676665554333211100000 0000 0000111111 111 22
Q ss_pred CCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecC
Q 046871 418 IPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 418 ~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~ 457 (764)
...|.++.+||||..|++...+|.|.+|++.+.++.+.+.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 5679999999999999999999999999999999988874
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2.1e-08 Score=99.23 Aligned_cols=128 Identities=22% Similarity=0.262 Sum_probs=106.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-----SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~ 289 (764)
.++.|.++.|...+++++.|+.+|.|..+|++.+ .+...+ -|.+.|+++..-. ++.+|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4677888999888999999999999999999876 334444 3889999988766 78899999999999999999
Q ss_pred CCee---eEEEeeecCceEEEE--EcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCC
Q 046871 290 QQRC---IHSYAVHTDSVWALA--STPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHP 344 (764)
Q Consensus 290 ~~~~---~~~l~~h~~~V~~l~--~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 344 (764)
.-++ +.++.+|...-.-+- .++....+++++.|...+||.++.+..+..++...+
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 8888 899999976544443 467778899999999999999999999888776443
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=1.5e-07 Score=89.98 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=147.6
Q ss_pred eeEEEEeCCCeEEEEeCCCcEEEecCCCCCee------------eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 87 VNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTC------------IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 87 V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~------------~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
|+.+.+..+-.|+++..++.+..... ..+.+ ...+..|.++-.+-+.+ -.++.+++++.||.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~-~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s-~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGK-GRGRCISLWERDDGIDPFKVLAKNSEIDPNDACT-MTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhhheeecccchhheeeecc-ceEEEechhhcccCcCceeeeeccCCCCCccccc-ccCCceEecCCCceEEEE
Confidence 55666666557777777766655543 11222 22222333322222222 236678999999999999
Q ss_pred eCCCCCCCCC-CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEE
Q 046871 155 DIEAALAPSK-SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLL 232 (764)
Q Consensus 155 dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l 232 (764)
+.+....... ............+...+..+..........-+....+..+.........+... .|.+++-+| +.+++
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD-AVTALCSHPAQQHLV 195 (319)
T ss_pred echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc-cchhhhCCcccccEE
Confidence 9876322211 11111111122222223333333333444445555555554444433333333 399999999 45677
Q ss_pred EEEeCCCeEEEEeCCCCcee-EEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEc
Q 046871 233 VSGGTEKVVRVWDPRTGSKT-IKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST 310 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~-~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~s 310 (764)
++|+.||.+-+||.++.... ..++.|..+|..+-|+| ++..|++++.||.+..||..+ +.+ ..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l-------------~i~ 261 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFL-------------SIS 261 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceE-------------Eec
Confidence 88999999999999988543 35678999999999999 667899999999999999854 111 122
Q ss_pred CCCC---EEEEecCCC-cEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEee
Q 046871 311 PTFS---HVYSGGRDL-SLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 311 pd~~---~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd 368 (764)
++.. .-++|..-+ .|.+-.+... ....|+.+.+..+.+++|+.-+.|++++
T Consensus 262 ~~~s~~s~WLsgD~v~s~i~i~~ll~~-------~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 262 NQASVISSWLSGDPVKSRIEITSLLPS-------RSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CccccccccccCCcccceEeeeccccc-------cceeeeeeeccCceEEeccccceEEEec
Confidence 2110 011111111 1222222111 1335677777777788888888888764
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.75 E-value=3.4e-06 Score=87.12 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=150.5
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCcccee-ec-----------ccccceeEEEEeCCCeEEEEeCCCcEEEecCCCC
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSAT-FE-----------SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~-l~-----------~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~ 115 (764)
.+.||+.++-. .-|.|.++|-++...+.+.. +. ....-..+.+..+.++++..|. |...|.+. ..
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~-~~ 350 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP-WD 350 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC-CC
Confidence 46788877653 45889999988754221110 00 0011111222223346666665 66666663 22
Q ss_pred CeeeeeccccCCceEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 116 GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA-EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 116 ~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
+-.++ -+|...|.-..+. .+.+-++.|..|| .+-++|.++++.
T Consensus 351 ~~~iq--v~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~--------------------------------- 394 (668)
T COG4946 351 GYSIQ--VGKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEV--------------------------------- 394 (668)
T ss_pred CeeEE--cCCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceE---------------------------------
Confidence 33332 2467778888887 6677889999999 899999987521
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEE
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 274 (764)
......-+.|.++..+++|+.++.+.....|.+.|+.++.....-+...+-|+.+.|+|+++++
T Consensus 395 ----------------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 395 ----------------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred ----------------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeE
Confidence 2234456789999999999999999999999999999998776666677889999999999999
Q ss_pred EEEeCCC----cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec
Q 046871 275 LSGSSDS----MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 275 ~sgs~Dg----~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs 320 (764)
+-+--+| .|+++|+..++....-+ .++.=.+-+|.|++++|+--+
T Consensus 459 AYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 9887765 59999998877544332 333335678999999988544
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.1e-06 Score=90.35 Aligned_cols=274 Identities=16% Similarity=0.145 Sum_probs=158.5
Q ss_pred CeeEEEeecccccCCCcEEEEEeCC-----------CcEEEEeCCCCCCccceeecc--ccccee-EEEEeCCCeEEEEe
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRD-----------GTLKRWSLADDVGSCSATFES--HVDWVN-DAVLVGDNTLVSCS 102 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~D-----------g~I~iWd~~~~~~~~~~~l~~--h~~~V~-~v~~s~d~~l~s~s 102 (764)
+|.-+.| ||..+||+|-+.. -.++|||+.+ +...+.|.. ....++ -..||.|+.+++.-
T Consensus 251 ~Vq~idf-----SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 251 GVQFIDF-----SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred Cceeeec-----CCccceEEEecCCccccCcccCCCceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEe
Confidence 4555555 8999999996531 4689999999 555666654 222233 35788887555554
Q ss_pred CCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 103 SDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG-----AEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
.-.+|.|++..+ -.++..-.-.-..|....|+ |.+++||--... ..+.+..+.++.......-.....|...+
T Consensus 324 ~~~sisIyEtps-f~lld~Kslki~gIr~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 324 TGNSISIYETPS-FMLLDKKSLKISGIRDFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred ccceEEEEecCc-eeeecccccCCccccCcccC-CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence 457799998522 22222222234568888899 556666643221 23445555444333222222222333333
Q ss_pred cCCCCCCcccceeecCCC-----CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCC
Q 046871 178 NGSGNSLPVTSLRTIGSS-----NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT---EKVVRVWDPRTG 249 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~---dg~I~iwd~~~~ 249 (764)
..++..+.+..-...... .++.++........+ ....-...|...+|-|.|+.+++-+. ..++.+|-+.+.
T Consensus 402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc-eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC
Confidence 344444443332222221 122222222222111 12234667889999999998776543 347888887732
Q ss_pred ----ceeEEeccCCcCeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC
Q 046871 250 ----SKTIKLRGHTDNIRSLLLDSTGRYCLSG---SSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD 322 (764)
Q Consensus 250 ----~~~~~l~~h~~~V~~l~~spdg~~l~sg---s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D 322 (764)
+.+..+. ....+.+.|+|.|++++.+ |..|.+..+|+....+..+-....-..+.+.|.|.|+|+++++.-
T Consensus 481 ~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 481 IKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred CCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 2333343 2456789999999998765 457889999987534333322222346788999999999998764
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.72 E-value=9.3e-06 Score=79.62 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=136.4
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccccc---ceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccc
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD---WVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQ 124 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~---~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~ 124 (764)
+.+|+.||.- .|..|.|-...++-...+...+...+ .=..++|+||+ .|+.+.+.|+|+++|+. +..+..+..
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~I~p 82 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFVIPP 82 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEEcCc
Confidence 6889888876 56788888776643333344433332 23568999998 78888999999999973 333333332
Q ss_pred -------cCCceEEEEEecCC-----CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 125 -------HSDYVTCLAAAEKN-----SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 125 -------h~~~V~~l~~~p~~-----~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
-...|..+.|.+.. ...|++-..+|.++-|-+..+....-
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y---------------------------- 134 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY---------------------------- 134 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc----------------------------
Confidence 23567777776432 23455666677777666532110000
Q ss_pred CCCCcccccccCCCCccceec-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 193 GSSNSISAHTSQSQGYVPIAA-KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
.......+ ..+...|.++.++|..++|++|+.... +.+. -++....+++-.+-.+.
T Consensus 135 -------------~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 135 -------------QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDS 191 (282)
T ss_pred -------------eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCC
Confidence 00001112 234678999999999888888765432 1100 01112233332222222
Q ss_pred CE--EEEEeCCCc------EEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee
Q 046871 272 RY--CLSGSSDSM------IRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 272 ~~--l~sgs~Dg~------I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 340 (764)
.+ .++...|+. -.+|.+-+.+.........+.|..|..+|||..|++...+|.|.+|++.+-.+.....
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11 112222221 1233333222222112245679999999999999999999999999998766655443
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.1e-08 Score=111.85 Aligned_cols=223 Identities=19% Similarity=0.251 Sum_probs=158.4
Q ss_pred CCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCC
Q 046871 28 NSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDT 105 (764)
Q Consensus 28 ~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg 105 (764)
...+..|....+|++| |-+.+.|+.|+..|.|+++++.+ +.......+|...|+.+.-+.+| .|.++++..
T Consensus 1094 w~~frd~~~~fTc~af-----s~~~~hL~vG~~~Geik~~nv~s--G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAF-----SGGTNHLAVGSHAGEIKIFNVSS--GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred chhhhccccceeeEEe-----ecCCceEEeeeccceEEEEEccC--ccccccccccccccccccccCCcceeeeeccccC
Confidence 4556678999999999 78889999999999999999999 56677788999999999888887 344444444
Q ss_pred -cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 106 -TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 106 -~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
-..+|++...+...+++.. -.++.|+ .....-+.|.......+||+.++........
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~e----d~~vkFs-n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----------------- 1224 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE----DKAVKFS-NSLQFRALGTEADDALLYDVQTCSPLQTYLT----------------- 1224 (1516)
T ss_pred chHHHhccccccCccccccc----cceeehh-hhHHHHHhcccccceEEEecccCcHHHHhcC-----------------
Confidence 5789998666666666643 3578888 4444445555556799999998633221100
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEE
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 264 (764)
...+....-.+..|+|+..+++ .|| .+||.+..+.++.|...+..+..
T Consensus 1225 ---------------------------~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G 1272 (1516)
T KOG1832|consen 1225 ---------------------------DTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGG 1272 (1516)
T ss_pred ---------------------------cchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccc
Confidence 0011122225778999887776 455 58999999888888766544433
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
.|+|.|..++.-+ -|||+++.+.+++...-. -..+.|+..|..++..
T Consensus 1273 -~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1273 -GFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -cccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 5999999998877 499999988776654222 2467787777766643
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=8e-06 Score=89.42 Aligned_cols=188 Identities=11% Similarity=0.081 Sum_probs=120.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCe-----EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC-
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNI-----RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD- 302 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V-----~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~- 302 (764)
+..++.++.++.|..+|.++|+.+.++......+ .+-.. .+..++.++.+|.+..+|..+|+.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 4567778889999999999999988876321111 11111 134577788899999999999887665432110
Q ss_pred ------ceEEEEEcC--CCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCC
Q 046871 303 ------SVWALASTP--TFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 303 ------~V~~l~~sp--d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~ 374 (764)
....+..+| .+..++.++.+|.+..+|..+|+.+....... ...+....+.+++++.++.+..+|..+++.
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFAVDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcEEECCEEEEEcCCCeEEEEECCCCcE
Confidence 011111222 34577788889999999999998876554322 223444555589999999999999988754
Q ss_pred ceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEee
Q 046871 375 QKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVE 454 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~ 454 (764)
+-....... .......+ .+.+|+.++.||.|.+.|..+|+.+.
T Consensus 317 ~W~~~~~~~-----------------------------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 317 LWSQSDLLH-----------------------------------RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEcccccCC-----------------------------------CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 211110000 00000011 23467778999999999999999987
Q ss_pred ec
Q 046871 455 DY 456 (764)
Q Consensus 455 ~~ 456 (764)
.+
T Consensus 360 ~~ 361 (394)
T PRK11138 360 QQ 361 (394)
T ss_pred EE
Confidence 76
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.70 E-value=1.4e-07 Score=95.72 Aligned_cols=158 Identities=13% Similarity=0.158 Sum_probs=114.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCcCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 046871 220 VYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK----TIKLRGHTDNIRSLLLDSTGRYCLSGSSD---SMIRLWDLGQQR 292 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~sgs~D---g~I~iwdl~~~~ 292 (764)
...+..+++++++|++..+....+++.+.... +.... -...-+++.|..+......+..- ..+.+|....++
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455678899999998888877777665433 11111 22233455555555555554444 445555555554
Q ss_pred eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE--eecCCCeEEEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 293 CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL--CTGEHPILQLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 293 ~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
+. .+-+|-..++.++++||.++|+++++|..|++-.....-.+.. +.|..-|..++.-++. |++++.|++|++||+
T Consensus 144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 44 3447999999999999999999999999999988766554443 3477789999999999 899999999999999
Q ss_pred CCCCCceeee
Q 046871 370 EGRNPQKVFQ 379 (764)
Q Consensus 370 ~~~~~~~~~~ 379 (764)
.+++...++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999886654
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=6.3e-06 Score=90.07 Aligned_cols=151 Identities=7% Similarity=-0.040 Sum_probs=98.8
Q ss_pred cEEEEEEcCCCCE-EEEEeC---CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE-eCC--CcEEEEeCCCC
Q 046871 219 SVYALAMNDSGNL-LVSGGT---EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG-SSD--SMIRLWDLGQQ 291 (764)
Q Consensus 219 ~V~~l~~sp~g~~-l~sgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg-s~D--g~I~iwdl~~~ 291 (764)
.+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+.|+.. +.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999985 554433 3579999998886544333 45556678899999877643 333 46888898777
Q ss_pred eeeEEEeeecCceEEEEEcCCCCEEEEec-CCC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCC-----
Q 046871 292 RCIHSYAVHTDSVWALASTPTFSHVYSGG-RDL--SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTD----- 361 (764)
Q Consensus 292 ~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~d----- 361 (764)
+. ..+..+........|+|||+.|+-.+ ..+ .|++.|+.+++.......... ...|+||+ ++..+..
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 64 34444443344568999998777444 333 688889988877554433222 24899999 4444332
Q ss_pred ----CcEEEeeCCCCC
Q 046871 362 ----SSVHRWPAEGRN 373 (764)
Q Consensus 362 ----g~I~iwd~~~~~ 373 (764)
..|.+.|+.++.
T Consensus 345 ~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 345 GKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCCcEEEEEECCCCC
Confidence 256666666554
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=2.9e-07 Score=87.94 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=99.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCC------CcEEEecCCCCCeeeeeccc
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSD------TTLKTWNCSSDGTCIRTLRQ 124 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~D------g~V~vWd~~~~~~~~~~l~~ 124 (764)
-++.+++++.||.+.+.+.+.. .........-...--+.++...+.++.+..- +..+.|++......+....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~- 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK- 177 (319)
T ss_pred cCCceEecCCCceEEEEechHH-HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-
Confidence 4678999999999999998762 2222222221111222333333433333332 3456676533222222222
Q ss_pred cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccC
Q 046871 125 HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQ 204 (764)
Q Consensus 125 h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 204 (764)
..+.|.+++-+|...+++++|+.||.+.+||.+...
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------------------------------------- 213 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------------------------------------- 213 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEccccc--------------------------------------------
Confidence 234499999998788899999999999999998741
Q ss_pred CCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 046871 205 SQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRT 248 (764)
Q Consensus 205 ~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~ 248 (764)
.....+..|+..|..+.|+| ++..|+++++||.+.-||..+
T Consensus 214 ---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 ---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 12234788999999999999 788999999999999999754
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=7.2e-07 Score=90.63 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=116.9
Q ss_pred eeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC--CccceeecccccceeEEEEeCCC-eE---EEEeCCCcEEEec
Q 046871 38 INCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV--GSCSATFESHVDWVNDAVLVGDN-TL---VSCSSDTTLKTWN 111 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~--~~~~~~l~~h~~~V~~v~~s~d~-~l---~s~s~Dg~V~vWd 111 (764)
+.|++......++++++||.+..+....++++.... .++...+.. ...-+.+.|..+. .. ..++....+.+|.
T Consensus 60 ~~~~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 60 ILSLAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred hhhccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 667777666778999999999888887777775432 222222222 2223344554432 22 2344556677777
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
... .+...+-+|-..+..++++ +|+++++++..|..|++-........
T Consensus 139 ~~~--~~~~~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~I----------------------------- 186 (390)
T KOG3914|consen 139 ADS--GRCEPILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVI----------------------------- 186 (390)
T ss_pred ccc--cCcchhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccch-----------------------------
Confidence 532 4445566899999999999 78899999999999999776542111
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR 256 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~ 256 (764)
.....+|+.-|..++..++ ..|++|+.|++|++||+++|+.+..+.
T Consensus 187 ------------------esfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 187 ------------------ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ------------------hhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 1124679999999998764 568999999999999999999886654
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=1.8e-05 Score=80.03 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=133.6
Q ss_pred CCcEEEEeCCCCCCccceeeccc--ccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCC
Q 046871 61 DGTLKRWSLADDVGSCSATFESH--VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN 138 (764)
Q Consensus 61 Dg~I~iWd~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~ 138 (764)
+|+|..||..+ ++.+-...-- .....+.....++.+++++.++.|..||. .+++.+-.+............ .
T Consensus 2 ~g~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~-~tG~~~W~~~~~~~~~~~~~~---~ 75 (238)
T PF13360_consen 2 DGTLSALDPRT--GKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDA-KTGKVLWRFDLPGPISGAPVV---D 75 (238)
T ss_dssp TSEEEEEETTT--TEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEET-TTSEEEEEEECSSCGGSGEEE---E
T ss_pred CCEEEEEECCC--CCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEEC-CCCCEEEEeeccccccceeee---c
Confidence 68888999877 4444444321 11122113335678888899999999996 557766554431111111222 3
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCC
Q 046871 139 SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKE 218 (764)
Q Consensus 139 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 218 (764)
+..++.++.++.|..+|..++...-.. ..... . .. ...
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~-------------------------------------~~~~~-~---~~-~~~ 113 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSI-------------------------------------YLTSS-P---PA-GVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEE-------------------------------------EE-SS-C---TC-STB
T ss_pred ccccccccceeeeEecccCCcceeeee-------------------------------------ccccc-c---cc-ccc
Confidence 556666668889999998876332110 00000 0 00 000
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcC----------eEEEEEcCCCCEEEEEeCCCc-EEEEe
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN----------IRSLLLDSTGRYCLSGSSDSM-IRLWD 287 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~----------V~~l~~spdg~~l~sgs~Dg~-I~iwd 287 (764)
......+. ++.++++..++.|..+|+++|+.+......... +..-.+..++ .++.++.++. +.+ |
T Consensus 114 ~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d 189 (238)
T PF13360_consen 114 SSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D 189 (238)
T ss_dssp --SEEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred cccCceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence 11122222 778888988999999999999998887654422 1222222344 7777777885 555 9
Q ss_pred CCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE
Q 046871 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 288 l~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~ 337 (764)
+.+++.+.... ...+..+ ...++..++.++.++.|..||+++|+.+.
T Consensus 190 ~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 190 LATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 99999664333 2222221 34677788888899999999999998764
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=2e-06 Score=84.22 Aligned_cols=281 Identities=13% Similarity=0.203 Sum_probs=167.5
Q ss_pred ccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCee----eeeccccC------------CceEEEEEecC-CCcEEEEE
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTC----IRTLRQHS------------DYVTCLAAAEK-NSNIVASG 145 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~----~~~l~~h~------------~~V~~l~~~p~-~~~~lasg 145 (764)
.+.|+++.|...| +|++|...|.|.++.-.....| ...++.|. ..|..+.|..+ +...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4668899998876 8888888899999974332222 22345554 24777888732 34566777
Q ss_pred eCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEE
Q 046871 146 GLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM 225 (764)
Q Consensus 146 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~ 225 (764)
+.|++|++|.+..............+.......+.-.......+...+....+... .....-...|.--|.++.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-----~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-----KPCRVYANAHPYHINSISF 180 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-----ccceeccccceeEeeeeee
Confidence 78999999999764332221111111111111100000000000001111111100 0011113568888999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce---eEEeccCC-----cCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCee---
Q 046871 226 NDSGNLLVSGGTEKVVRVWDPRTGSK---TIKLRGHT-----DNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRC--- 293 (764)
Q Consensus 226 sp~g~~l~sgs~dg~I~iwd~~~~~~---~~~l~~h~-----~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~~--- 293 (764)
+.|...++++ .|=.|.+|++.-... +..++.|. .-|++..|+|.. ..+.-.++.|+|++-|+++...
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9998888776 567899998864432 33344443 357888899854 4566677899999999984321
Q ss_pred ---eEE----------EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-eEEEEee-------------cCCCe-
Q 046871 294 ---IHS----------YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-ESLLLCT-------------GEHPI- 345 (764)
Q Consensus 294 ---~~~----------l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~-------------~~~~V- 345 (764)
+.. +..-...|..+.|+++|+++++-+. -+|++||.... .++.++. ....|
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcccee
Confidence 111 1122356888999999999987654 58999999754 3444442 12333
Q ss_pred --EEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 346 --LQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 346 --~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
..+.|+.|. +++|+..+..-+|.+.+
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eeEEEEecCCcccccccccccceeeecccc
Confidence 356778776 88888888888887543
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.62 E-value=1.9e-05 Score=79.91 Aligned_cols=216 Identities=15% Similarity=0.120 Sum_probs=133.0
Q ss_pred CCcEEEecCCCCCeeeeecccc--CCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQH--SDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h--~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
+|+|..||. .+++.+-....- .....+..+. ++..+++++.++.|..||..+++..-.
T Consensus 2 ~g~l~~~d~-~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~----------------- 61 (238)
T PF13360_consen 2 DGTLSALDP-RTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWR----------------- 61 (238)
T ss_dssp TSEEEEEET-TTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEE-----------------
T ss_pred CCEEEEEEC-CCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEE-----------------
Confidence 678888886 456665544321 1222222332 366777778999999999987532210
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ccCCc
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-RGHTD 260 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~ 260 (764)
.. ........ .. ..+..+++++.++.|+.+|..+|+.+.+. .....
T Consensus 62 ---------------------~~--------~~~~~~~~--~~--~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 62 ---------------------FD--------LPGPISGA--PV--VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ---------------------EE--------CSSCGGSG--EE--EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred ---------------------ee--------ccccccce--ee--ecccccccccceeeeEecccCCcceeeeecccccc
Confidence 00 00000000 11 12556777778889999999999998884 32211
Q ss_pred ---CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc----------eEEEEEcCCCCEEEEecCCCcEEE
Q 046871 261 ---NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS----------VWALASTPTFSHVYSGGRDLSLYL 327 (764)
Q Consensus 261 ---~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~----------V~~l~~spd~~~l~sgs~Dg~I~i 327 (764)
.........++..++.+..++.|..+|+++|+.+......... +..-....++ .++.++.++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 1122223334888899988999999999999998888764422 1122222344 7777777776444
Q ss_pred EeCCCCeEEEEeecCCCeEE-EEeeCCceEEEeCCCcEEEeeCCCCCC
Q 046871 328 TDLATRESLLLCTGEHPILQ-LALHDDNIWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 328 wd~~~~~~~~~~~~~~~V~~-l~~spd~l~~~s~dg~I~iwd~~~~~~ 374 (764)
+|+.+++.+.... ...+.. .....+.+++++.++.|..||+.+++.
T Consensus 188 ~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 188 VDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred EECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 4999999775333 344444 333333388888999999999999864
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.57 E-value=0.00011 Score=74.83 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=135.1
Q ss_pred cC-CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEe-CCCeEEEEeCCCcEEEecCCCCCeeeeeccc--
Q 046871 49 SN-GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLV-GDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQ-- 124 (764)
Q Consensus 49 S~-d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s-~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~-- 124 (764)
.+ ++.++++--..+.|..|+..++. ...+.... ...+++. +++.|+.+..++. .++|+ ..++.......
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~-~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDP-DTGKVTVLADLPD 80 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTE---EEEEESSS--EEEEEEECTTSEEEEEETTCE-EEEET-TTTEEEEEEEEET
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCe---EEEEecCC--CceEEEEccCCEEEEEEcCce-EEEec-CCCcEEEEeeccC
Confidence 45 66777777678999999998732 22222222 6667777 7788888877554 55586 33433222221
Q ss_pred ---cCCceEEEEEecCCCcEEEEEeCC--------CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 125 ---HSDYVTCLAAAEKNSNIVASGGLG--------AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 125 ---h~~~V~~l~~~p~~~~~lasg~~d--------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
.....+.+++. +++++.++.... |.|..++.. +
T Consensus 81 ~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---------------------------------- 124 (246)
T PF08450_consen 81 GGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---------------------------------- 124 (246)
T ss_dssp TCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-S----------------------------------
T ss_pred CCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-C----------------------------------
Confidence 34567889999 677766665543 335555544 1
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce-------eEEeccCCcCeEEE
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPRTGSK-------TIKLRGHTDNIRSL 265 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~~~~-------~~~l~~h~~~V~~l 265 (764)
.. ......-.....|+|+|+++.|+ +-+..+.|..+++..... ...+....+..-.+
T Consensus 125 --------------~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 125 --------------KV-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp --------------EE-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE
T ss_pred --------------eE-EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcc
Confidence 00 11111234467999999998775 566788899999853221 12223222347889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEE-cCCCCEEEE
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS-TPTFSHVYS 318 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~-spd~~~l~s 318 (764)
++..+|+..++....+.|.++|.+ |+.+..+......+++++| -++.+.|+.
T Consensus 190 ~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 190 AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 999999988888889999999987 9988888877678999999 467666653
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=1.1e-06 Score=97.56 Aligned_cols=182 Identities=19% Similarity=0.206 Sum_probs=140.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEE
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL 307 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l 307 (764)
++..++.|+....+..+|+++.+..+...-..+.|.-+.. +++++.+|...|+|.+-|.++.+.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3556888888888889999988877766544545655554 58999999999999999999999999999999998776
Q ss_pred EEcCCCCEEEEecC---------CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCC-CC
Q 046871 308 ASTPTFSHVYSGGR---------DLSLYLTDLATRESLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPAEGR-NP 374 (764)
Q Consensus 308 ~~spd~~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~-~~ 374 (764)
.. .|+.|+++|. |.-|+|||++.-+.+..++....-.-+.|+|.. +++++..|...+-|..+. ++
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 55 6789998875 556899999988877766655555667888876 888898998888774321 11
Q ss_pred ceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 375 QKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
.. ......+-.+.+....++++|..|+.++.+|.|.+|-
T Consensus 302 ~~---------------------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PA---------------------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cc---------------------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 00 0011223355688999999999999999999999997
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.54 E-value=0.00016 Score=73.53 Aligned_cols=216 Identities=14% Similarity=0.078 Sum_probs=135.6
Q ss_pred EEEEeC-CC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 046871 89 DAVLVG-DN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSG 166 (764)
Q Consensus 89 ~v~~s~-d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~ 166 (764)
+++|.+ ++ .+++--..+.|..|+... +. ...+.... ...+++..++ ..++.+..++ +.++|+.++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-~~-~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~---- 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-GE-VEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVT---- 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-TE-EEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEE----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-Ce-EEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEE----
Confidence 567887 56 455555688899999633 32 22222222 6677777344 5555555555 566688764111
Q ss_pred CCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceec--cC-CCCcEEEEEEcCCCCEEEEEeCC-----
Q 046871 167 DAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA--KG-HKESVYALAMNDSGNLLVSGGTE----- 238 (764)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~-~~~~V~~l~~sp~g~~l~sgs~d----- 238 (764)
..... .. .......+++.++|++.++....
T Consensus 74 ------------------------------------------~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~ 111 (246)
T PF08450_consen 74 ------------------------------------------VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG 111 (246)
T ss_dssp ------------------------------------------EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC
T ss_pred ------------------------------------------EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc
Confidence 00011 11 34567899999999977765543
Q ss_pred ---CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCee----eEEE---eeecCceEEE
Q 046871 239 ---KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLWDLGQQRC----IHSY---AVHTDSVWAL 307 (764)
Q Consensus 239 ---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl~~~~~----~~~l---~~h~~~V~~l 307 (764)
|.|..++.. ++...... .-...+.|+|+||++.|+ +-+..+.|..+++..... ...+ ....+..-.+
T Consensus 112 ~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 112 IDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp GGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE
T ss_pred ccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcc
Confidence 568888877 55433333 345678999999999776 556778899999853211 1222 2122247789
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC-CCeEEEEee-CCc--eEEEe
Q 046871 308 ASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE-HPILQLALH-DDN--IWVAT 359 (764)
Q Consensus 308 ~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~V~~l~~s-pd~--l~~~s 359 (764)
+++.+|++.++.-..+.|.+++.+ |+.+..+... ..+++++|. ++. |++.+
T Consensus 190 ~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 190 AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 999999988887788999999988 8777766654 689999995 443 55544
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.9e-06 Score=82.68 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=150.4
Q ss_pred EEEEeCCCCCCccceeecccccceeEEEEeCC--CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcE
Q 046871 64 LKRWSLADDVGSCSATFESHVDWVNDAVLVGD--NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNI 141 (764)
Q Consensus 64 I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~ 141 (764)
++..+..+ .+...-+..|...|.+++|+|. |.+..++.+..|+|.|+ ....+...+..+ ..+++++|...+.++
T Consensus 175 v~~l~~~~--fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHD--FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCC--cchhhcccccchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheecc-CCceeeeeccCCcce
Confidence 44444443 4555667788899999999987 47889999999999998 446667777767 789999999778899
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEE
Q 046871 142 VASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVY 221 (764)
Q Consensus 142 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~ 221 (764)
++.|...|.|.+||++.......... ......+|.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~---------------------------------------------a~~t~~pv~ 285 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELV---------------------------------------------ANVTINPVH 285 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhh---------------------------------------------hhhccCcce
Confidence 99999999999999987432211000 000011222
Q ss_pred EE------EEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCc------EE
Q 046871 222 AL------AMNDSGNLLVSGGTEKVVRVWDPRTG----SKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSM------IR 284 (764)
Q Consensus 222 ~l------~~sp~g~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~------I~ 284 (764)
.+ ...+.|.+++....+ +..|.+.-. -++..+. ..+...++.+.+-.+.++... .+.+ |-
T Consensus 286 ~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il 362 (463)
T KOG1645|consen 286 KIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFIL 362 (463)
T ss_pred eecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeecCccceEEEEecCCCCCccceeee
Confidence 22 223345555544432 455554321 1222221 234455555555444433322 2110 10
Q ss_pred E-EeCCCCeeeEEEe-eecCc-------eEEEEEcCCCCEEE-EecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc
Q 046871 285 L-WDLGQQRCIHSYA-VHTDS-------VWALASTPTFSHVY-SGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN 354 (764)
Q Consensus 285 i-wdl~~~~~~~~l~-~h~~~-------V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~ 354 (764)
. -|-.+|.++..-+ .+.+. -..+.-.++.++++ .++..+.+.+||..+.+.++.+....+|..++...-.
T Consensus 363 ~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n 442 (463)
T KOG1645|consen 363 GRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTN 442 (463)
T ss_pred eeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcceeecceeecC
Confidence 0 1112222221111 11000 01222245556666 5666789999999999999999998999988775442
Q ss_pred ---eEEEeCCCcEEEeeCC
Q 046871 355 ---IWVATTDSSVHRWPAE 370 (764)
Q Consensus 355 ---l~~~s~dg~I~iwd~~ 370 (764)
++..-.|..++||..+
T Consensus 443 ~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 443 GSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred CcchhhheecceEEEEecC
Confidence 6666677788888654
No 309
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=5.5e-05 Score=82.76 Aligned_cols=195 Identities=10% Similarity=0.010 Sum_probs=116.8
Q ss_pred ceeEEEEeCCC-e-EEEEeCC---CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEE-EEEeCC--CeEEEEeCC
Q 046871 86 WVNDAVLVGDN-T-LVSCSSD---TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIV-ASGGLG--AEVFIWDIE 157 (764)
Q Consensus 86 ~V~~v~~s~d~-~-l~s~s~D---g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~l-asg~~d--g~I~iwdl~ 157 (764)
.+....|+||+ . ++..+.+ ..|.++|+. +++... +....+......|+ +|+..+ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~-lt~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEK-IASSQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEE-EecCCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC
Confidence 67788999997 3 5544443 458888873 343332 22345556677899 566544 444444 467777776
Q ss_pred CCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC
Q 046871 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT 237 (764)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~ 237 (764)
++.. ..+..+........|+|||+.|+..+.
T Consensus 266 ~g~~-------------------------------------------------~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 266 TKTL-------------------------------------------------TQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred CCcE-------------------------------------------------EEcccCCCccCccEECCCCCEEEEEEC
Confidence 5311 111112222234579999998877654
Q ss_pred C-C--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeeeEEEeeecCceE
Q 046871 238 E-K--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD---------SMIRLWDLGQQRCIHSYAVHTDSVW 305 (764)
Q Consensus 238 d-g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D---------g~I~iwdl~~~~~~~~l~~h~~~V~ 305 (764)
. + .|.++|+.+++....... ... ...|+|||++|+..+.. ..|.+.|+.++.. ..+... ....
T Consensus 297 r~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~ 371 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQ 371 (419)
T ss_pred CCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcC
Confidence 2 2 688889887765333221 111 24899999998766543 2688889877754 334332 2333
Q ss_pred EEEEcCCCCEEEEecCC-C--cEEEEeCCCCeEEE
Q 046871 306 ALASTPTFSHVYSGGRD-L--SLYLTDLATRESLL 337 (764)
Q Consensus 306 ~l~~spd~~~l~sgs~D-g--~I~iwd~~~~~~~~ 337 (764)
...|+|||+.|+..+.+ + .+.+.++.......
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 58899999988754432 2 36677776544443
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.9e-06 Score=91.59 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=116.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS 296 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~ 296 (764)
.+.++|++++ ++.|+-|+.+|.|++++.. +.. .+...|... ..+|.++++||.||+|.|-.+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567777777 7899999999999999975 333 333345443 66899999999999999999988887777
Q ss_pred EeeecCceEEEEEcCC-----CCEEEEecCCCcEEEEeC---CCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEee
Q 046871 297 YAVHTDSVWALASTPT-----FSHVYSGGRDLSLYLTDL---ATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 297 l~~h~~~V~~l~~spd-----~~~l~sgs~Dg~I~iwd~---~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd 368 (764)
+.. ..++.+++++|+ .+.+++||.-| +.++.- .....+......++|.++.|..+-|+-+..+ .|++||
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~-Gv~vyd 185 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDD-GVKVYD 185 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCC-CcEEEe
Confidence 763 458999999998 57899999988 777653 2334444555689999999998876666655 489999
Q ss_pred CCCCCCceeeecC
Q 046871 369 AEGRNPQKVFQRG 381 (764)
Q Consensus 369 ~~~~~~~~~~~~~ 381 (764)
+..++.+..++..
T Consensus 186 ~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 186 TPTRQRLTNIPPP 198 (846)
T ss_pred ccccceeeccCCC
Confidence 9988777666543
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=9e-07 Score=87.92 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=121.7
Q ss_pred CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
++-++.+.+..|-+-|+.. ...+.+. ....|.++.|. ..++++..|...|.|..+|++......
T Consensus 225 gyhfs~G~sqqv~L~nvet--g~~qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~------------ 288 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVET--GHQQSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGN------------ 288 (425)
T ss_pred eeeecccccceeEEEEeec--ccccccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCC------------
Confidence 3345666667777777532 2233443 56678899998 778999999999999999998641110
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce---
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSK--- 251 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~--- 251 (764)
+ ......-|.++|+++..-. ++++|++.+.+|.|.+||.+--++
T Consensus 289 -------------------------------~-~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~ 336 (425)
T KOG2695|consen 289 -------------------------------G-WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS 336 (425)
T ss_pred -------------------------------C-cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc
Confidence 1 1122345888999998777 788999999999999999987766
Q ss_pred eEEeccCCcCeEE--EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec----CceEEEEEc
Q 046871 252 TIKLRGHTDNIRS--LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT----DSVWALAST 310 (764)
Q Consensus 252 ~~~l~~h~~~V~~--l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~----~~V~~l~~s 310 (764)
+.++.||...-.- +.+.+....+++++.|-..|||.++.+..+.++.... ..+++++|.
T Consensus 337 V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 337 VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 8889998664333 3345666788999999999999999999988876432 235555553
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.38 E-value=0.00049 Score=77.36 Aligned_cols=288 Identities=13% Similarity=0.122 Sum_probs=162.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeeccccc------c-ee-EEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeecc
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD------W-VN-DAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLR 123 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~------~-V~-~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~ 123 (764)
+..++.++.++.|...|..++ +.+-++..... . +. .+....++.++.++.++.|.-+|. .+++.+-.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~-~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDA-ETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEEC-CCCCEeeeec
Confidence 456778888999999999884 44443332211 1 11 112222267888889999999996 4566554433
Q ss_pred ccCCc-----e-EEEEEecCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 124 QHSDY-----V-TCLAAAEKNSNIVASGG---------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 124 ~h~~~-----V-~~l~~~p~~~~~lasg~---------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
..... + ....+. +.+++.++ .++.+..+|..+++..-+......... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~---------~----- 200 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN---------A----- 200 (488)
T ss_pred CCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC---------C-----
Confidence 22210 1 112222 24444443 367788888887654422111000000 0
Q ss_pred eeecCCCCcccccccCCCCccceeccCCC-CcE-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCC
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHK-ESV-YALAMNDSGNLLVSGGTEK------------------VVRVWDPRT 248 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~V-~~l~~sp~g~~l~sgs~dg------------------~I~iwd~~~ 248 (764)
...+ ..... ...+. ..+ .+.++.+.+..++.++.++ .|.-+|..+
T Consensus 201 ---------~~~~-----~~~~~-~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 201 ---------FPTW-----GPDRQ-MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ---------CCCC-----CCCcc-eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 0000 00000 00000 111 1234555566777776554 799999999
Q ss_pred CceeEEeccCCcCe------EEEEEc----CCCC---EEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCE
Q 046871 249 GSKTIKLRGHTDNI------RSLLLD----STGR---YCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSH 315 (764)
Q Consensus 249 ~~~~~~l~~h~~~V------~~l~~s----pdg~---~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~ 315 (764)
|+.+.+++.-.... ....+. -+|. .++.++.+|.+...|.++|+.+....... ..++.+| ..
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~ 340 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GL 340 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ce
Confidence 99988865211111 111111 2343 57888899999999999999887765321 1233444 33
Q ss_pred EEEe------------------cCCCcEEEEeCCCCeEEEEeecC---------CCe--EEEEeeCCceEEEeCCCcEEE
Q 046871 316 VYSG------------------GRDLSLYLTDLATRESLLLCTGE---------HPI--LQLALHDDNIWVATTDSSVHR 366 (764)
Q Consensus 316 l~sg------------------s~Dg~I~iwd~~~~~~~~~~~~~---------~~V--~~l~~spd~l~~~s~dg~I~i 366 (764)
++.+ ..+|.+.-.|..+|+.+...... .+. ..+....+.+++++.||.|+.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 3332 24678999999999988766543 122 133444445889999999999
Q ss_pred eeCCCCCCceeee
Q 046871 367 WPAEGRNPQKVFQ 379 (764)
Q Consensus 367 wd~~~~~~~~~~~ 379 (764)
+|.++++.+-.++
T Consensus 421 ld~~tG~~lW~~~ 433 (488)
T cd00216 421 FDATTGKELWKFR 433 (488)
T ss_pred EECCCCceeeEEE
Confidence 9999998776655
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=5.3e-06 Score=92.26 Aligned_cols=145 Identities=15% Similarity=0.270 Sum_probs=114.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC---------CCcEEEEeCC
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS---------DSMIRLWDLG 289 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~---------Dg~I~iwdl~ 289 (764)
.|+-++.+ ++.+.+|...|+|.+-|.++.+.++++..|++.|.++... |+.|++++. |.-|+|||++
T Consensus 179 ~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhh
Confidence 35555544 8899999999999999999999999999999999887665 889998874 5668999999
Q ss_pred CCeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEe---CCCCe-EEE-EeecCCCeEEEEeeCCc--eEEEeCC
Q 046871 290 QQRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTD---LATRE-SLL-LCTGEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 290 ~~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd---~~~~~-~~~-~~~~~~~V~~l~~spd~--l~~~s~d 361 (764)
+.+.+..+..+-++ .-+.|+|.- ..++.++..|...+-| +.+.. .+. .......+.++++++.+ ++.+..+
T Consensus 255 mmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 98888877777665 456778854 4677788889999998 43332 122 22234459999999998 8899999
Q ss_pred CcEEEee
Q 046871 362 SSVHRWP 368 (764)
Q Consensus 362 g~I~iwd 368 (764)
|.|.+|.
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999998
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1e-06 Score=60.92 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=37.2
Q ss_pred CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEe
Q 046871 291 QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTD 329 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd 329 (764)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.36 E-value=0.00054 Score=69.53 Aligned_cols=202 Identities=17% Similarity=0.101 Sum_probs=136.6
Q ss_pred eEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 129 VTCLAAAEKNSNIVASGGLGA-EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
...++.+|.....++.+-.-| ...+||..++........
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------------------------------------- 46 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------------------------------------- 46 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----------------------------------------
Confidence 345677755677777776655 467889887643321100
Q ss_pred ccceeccCCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEeCC-CCceeEEeccCCcCeEEEEEcCCCCEEEEEe---
Q 046871 208 YVPIAAKGHKESVYALAMNDSGNLLVSGG-----TEKVVRVWDPR-TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--- 278 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-----~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs--- 278 (764)
..-..+.+| -+|++||++|++.- ..|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+++.
T Consensus 47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 001124444 46999999999864 35789999998 6688888988877788899999998887763
Q ss_pred ---------------CCCcEEEEeCCCCeeeEE--E--eeecCceEEEEEcCCCCEEEEecCCCc-------EEEEeCCC
Q 046871 279 ---------------SDSMIRLWDLGQQRCIHS--Y--AVHTDSVWALASTPTFSHVYSGGRDLS-------LYLTDLAT 332 (764)
Q Consensus 279 ---------------~Dg~I~iwdl~~~~~~~~--l--~~h~~~V~~l~~spd~~~l~sgs~Dg~-------I~iwd~~~ 332 (764)
.+-.+...|..+|+.+.. + ..|..+|..|++.++|..++..-..|. |.+++-
T Consensus 121 ~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-- 198 (305)
T PF07433_consen 121 ETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-- 198 (305)
T ss_pred ccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--
Confidence 233455667788887776 4 347789999999999887766544332 333333
Q ss_pred CeEEEEee--------cCCCeEEEEeeCCc--eEEEe-CCCcEEEeeCCCCCCceee
Q 046871 333 RESLLLCT--------GEHPILQLALHDDN--IWVAT-TDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 333 ~~~~~~~~--------~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~~~~~~~~~ 378 (764)
++.+..+. ..+-+-+|++++++ +++.+ ..+.+.+||..+++.+...
T Consensus 199 g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 199 GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 33233222 24568999999998 33333 4789999999998766544
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1e-05 Score=89.17 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=136.8
Q ss_pred CCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCC
Q 046871 126 SDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQS 205 (764)
Q Consensus 126 ~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 205 (764)
.+.+.|++++ ..+|+-|+.+|.|++.+.....
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--------------------------------------------- 70 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--------------------------------------------- 70 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcc---------------------------------------------
Confidence 4678888888 8899999999999999986421
Q ss_pred CCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC-----CCEEEEEeCC
Q 046871 206 QGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST-----GRYCLSGSSD 280 (764)
Q Consensus 206 ~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~~l~sgs~D 280 (764)
.....|... .-+|.++++|+.||.|.|-.+-+.+...++. ...++.+++++|| .+++++|+.-
T Consensus 71 -----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~a 138 (846)
T KOG2066|consen 71 -----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMA 138 (846)
T ss_pred -----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcc
Confidence 112223222 4579999999999999999998888877766 4578999999998 5689999988
Q ss_pred CcEEEEeCCC-Cee-eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCC-------CeEEEEee
Q 046871 281 SMIRLWDLGQ-QRC-IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEH-------PILQLALH 351 (764)
Q Consensus 281 g~I~iwdl~~-~~~-~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------~V~~l~~s 351 (764)
| +.++.-+- ++. -..+....++|.++.|. |.++|-++.+| |++||+.+++.+..++... --..+.|.
T Consensus 139 g-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 139 G-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred e-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 8 77776432 111 11355567899999996 56788777665 8999999988877665322 24578899
Q ss_pred CCceEEEeCCCcEEEeeCC
Q 046871 352 DDNIWVATTDSSVHRWPAE 370 (764)
Q Consensus 352 pd~l~~~s~dg~I~iwd~~ 370 (764)
++..++-+...+|+|..+.
T Consensus 215 ~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 215 DEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CCCeEEEecCCeEEEEEEe
Confidence 9997777788889999887
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.33 E-value=0.0003 Score=79.01 Aligned_cols=285 Identities=14% Similarity=0.153 Sum_probs=158.0
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCC------ce--EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD------YV--TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSG 166 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~------~V--~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~ 166 (764)
++.++.++.++.|.-.|. .+++.+-.+..... .+ ..+++. ++..++.++.++.|.-+|.++++..-+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 567778888899988886 44554433322211 00 011222 23678888889999999998865432211
Q ss_pred CCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE---------eC
Q 046871 167 DAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG---------GT 237 (764)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg---------s~ 237 (764)
..... ..... ... +..+. +..++.+ +.
T Consensus 138 ~~~~~--------------------------------------~~~~~-i~s---sP~v~--~~~v~vg~~~~~~~~~~~ 173 (488)
T cd00216 138 NNDQV--------------------------------------PPGYT-MTG---APTIV--KKLVIIGSSGAEFFACGV 173 (488)
T ss_pred CCCCc--------------------------------------CcceE-ecC---CCEEE--CCEEEEeccccccccCCC
Confidence 00000 00000 000 00111 1334443 34
Q ss_pred CCeEEEEeCCCCceeEEeccCCcC--------------------e-EEEEEcCCCCEEEEEeCCC---------------
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHTDN--------------------I-RSLLLDSTGRYCLSGSSDS--------------- 281 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~~~--------------------V-~~l~~spdg~~l~sgs~Dg--------------- 281 (764)
++.|..+|..+|+.+.++...... + .+.++++.+..++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 688999999999988876542110 1 1244555567788887665
Q ss_pred ---cEEEEeCCCCeeeEEEeeecCceEE------EEEc----CCCC---EEEEecCCCcEEEEeCCCCeEEEEeecCCCe
Q 046871 282 ---MIRLWDLGQQRCIHSYAVHTDSVWA------LAST----PTFS---HVYSGGRDLSLYLTDLATRESLLLCTGEHPI 345 (764)
Q Consensus 282 ---~I~iwdl~~~~~~~~l~~h~~~V~~------l~~s----pd~~---~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V 345 (764)
.|.-+|+.+|+.+..++.-....+. ..+. -++. .++.++.+|.+...|.++|+.+...... .
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~ 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--E 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--c
Confidence 7999999999998877532111111 1111 1333 6788899999999999999988765432 1
Q ss_pred EEEEeeCCceEEEe------------------CCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccC
Q 046871 346 LQLALHDDNIWVAT------------------TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 346 ~~l~~spd~l~~~s------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
..++.+|+.+++++ .+|.+.-.|+.+++.+=......... .
T Consensus 332 ~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~---------------------~ 390 (488)
T cd00216 332 QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD---------------------S 390 (488)
T ss_pred cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc---------------------c
Confidence 12334443344432 24566666766665432222100000 0
Q ss_pred CCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
. ..|.. .......-.+..|+.++.||.|+.+|..+|+.+-++
T Consensus 391 ~------~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 391 W------NIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred c------ccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 0 00000 000011125568888899999999999999999877
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00013 Score=81.16 Aligned_cols=210 Identities=18% Similarity=0.176 Sum_probs=136.5
Q ss_pred EeCC-CeEEEEeCCCcEEEecCCCCCeeeeeccccCCc-eEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCC
Q 046871 92 LVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY-VTCLAAAEKNSNIVASGGLGA-----EVFIWDIEAALAPSK 164 (764)
Q Consensus 92 ~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~-V~~l~~~p~~~~~lasg~~dg-----~I~iwdl~~~~~~~~ 164 (764)
|++. +.++.|+.+|.|.+.+ ..-+.++.++.+... |..+... .+.++|++-+.|+ .+++||++.......
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4444 5899999999998888 445566778877776 4444433 4557888877765 489999985311100
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iw 244 (764)
. ...... .+ ..........++.+++.+.+-+.+|+|-.+|.|.++
T Consensus 108 P------------------~c~~~~---------ri--------~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 108 P------------------QCLYEH---------RI--------FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY 152 (933)
T ss_pred c------------------ceeeee---------ee--------eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence 0 000000 00 000112246678899999998999999999999998
Q ss_pred eCC----CCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 245 DPR----TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-CIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 245 d~~----~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
.-+ .+....-......+|+.+++..+++.++-+..-..|.+|.+.... ....+..|.....|..+++....|+++
T Consensus 153 ~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 153 KGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 532 122222222345799999999999873333345678999997433 255577788889999998766546555
Q ss_pred cCCCcEEEEeCCCCeEEEEee
Q 046871 320 GRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~ 340 (764)
+ +..+.+|+.....+...+.
T Consensus 233 ~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 233 G-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred c-CceEEEEcCCCcceeeeec
Confidence 5 3468999988666655555
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=1.5e-06 Score=60.09 Aligned_cols=39 Identities=41% Similarity=0.756 Sum_probs=36.8
Q ss_pred CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 046871 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 249 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 287 (764)
++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1e-05 Score=82.32 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=80.0
Q ss_pred EEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC-CCEEEE
Q 046871 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT-FSHVYS 318 (764)
Q Consensus 241 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd-~~~l~s 318 (764)
+++.+..+.+...-+.+|...|+.++|+|..+ ++..++.+.+|+|.|+++..++..+..+ ..+|+++|+-| ..+|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66777666666666778888999999999877 7889999999999999999999999988 78999999754 567889
Q ss_pred ecCCCcEEEEeCCCCe
Q 046871 319 GGRDLSLYLTDLATRE 334 (764)
Q Consensus 319 gs~Dg~I~iwd~~~~~ 334 (764)
|...|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 9999999999998654
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.29 E-value=0.00024 Score=82.16 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=137.9
Q ss_pred cccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 83 HVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 83 h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
..+.|.++.|..+. .++.+..+|.|.+-|.. ...+.....-.+.|.+++|+ +|..+++..+.++++.+.+-.=...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~e--t~~~eivg~vd~GI~aaswS-~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPE--TLELEIVGNVDNGISAASWS-PDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccc--ccceeeeeeccCceEEEeec-CCCcEEEEEeCCcEEEEEeccccch
Confidence 34689999998775 78888889999998853 23344445567889999999 8899999998888887755321100
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-----e
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-----G 236 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-----s 236 (764)
..+.... .......+..-+..-..+ ..-++.+................. ...+.=+++.|-.||+++++. .
T Consensus 144 ~E~~L~~-d~~~~sk~v~VGwGrkeT--qfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLDA-DDERKSKFVNVGWGRKET--QFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hcccccc-ccccccccceecccccce--eeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccC
Confidence 0000000 000000000000000000 000001111000000000000000 011223468999999999873 2
Q ss_pred CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE---eCCCcEEEEeCCC---CeeeEEEeeecCceEEEEEc
Q 046871 237 TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG---SSDSMIRLWDLGQ---QRCIHSYAVHTDSVWALAST 310 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg---s~Dg~I~iwdl~~---~~~~~~l~~h~~~V~~l~~s 310 (764)
..+.|++||.+ |..-..-....+.-.+++|-|.|..+++- ++|+.|.+|.-.. +.....+......|..++|+
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 23789999976 54433333333445689999999988875 3466798987532 22222233334458999999
Q ss_pred CCCCEEEE---ecCCCcEEEEeCCCCe
Q 046871 311 PTFSHVYS---GGRDLSLYLTDLATRE 334 (764)
Q Consensus 311 pd~~~l~s---gs~Dg~I~iwd~~~~~ 334 (764)
.++..|+. ......|++|-+.+-.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCeE
Confidence 99999886 4445569999987653
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00014 Score=81.12 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=136.8
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccc-eeEEEEeCC-CeEEEEeCCCc-----EEEecCCCC-----C
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDW-VNDAVLVGD-NTLVSCSSDTT-----LKTWNCSSD-----G 116 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~-V~~v~~s~d-~~l~s~s~Dg~-----V~vWd~~~~-----~ 116 (764)
++.+..++.|+.+|.|.+.+-. .+.++.|+.+... |..+....+ +.|++.+.|+. |+||++... .
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred cCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4778899999999999888765 4556778888777 554444444 37888877754 899998543 2
Q ss_pred eeee--eccc-----cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 117 TCIR--TLRQ-----HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 117 ~~~~--~l~~-----h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
.++. .+.. ...++.+++.+ .+-..+|.|-.+|.|..+.-+-.+.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RD---------------------------- 159 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRD---------------------------- 159 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhc----------------------------
Confidence 2331 1112 24568889999 7788999999999998875431100
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeccCCcCeEEEEEc
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK-TIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~s 268 (764)
.+.........+.+|+++++..++..++....-..|.+|.+....+ ...+..|...+.|..++
T Consensus 160 ----------------rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~ 223 (933)
T KOG2114|consen 160 ----------------RGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS 223 (933)
T ss_pred ----------------cccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecC
Confidence 0111112233468899999998887733333345789999874442 44477778899999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-eecC
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYA-VHTD 302 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-~h~~ 302 (764)
+....+++++ +..+.+||.....+-.+|. +|..
T Consensus 224 ~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 224 DGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 7665566665 4568999987655555565 5543
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=0.0015 Score=63.20 Aligned_cols=303 Identities=14% Similarity=0.083 Sum_probs=145.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEE
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTC 131 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~ 131 (764)
..+++.|+..+.+..-|..++...-...+ ...|.+-+.--.+.++.|...|.+++.+. +++.....+.. .+.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdfVV~GCy~g~lYfl~~-~tGs~~w~f~~-~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDFVVLGCYSGGLYFLCV-KTGSQIWNFVI-LETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEEECCEEEEEEccCcEEEEEe-cchhheeeeee-hhhhcc
Confidence 45778888888888888887543222222 22333333323347889999999999997 45644444332 233444
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 132 LAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 132 l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
-+....++.++..|+.|++.+..|..+.....+..-.........+..... .+......+.+.............
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~-----sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG-----SLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc-----eEEEEeccceEEEEccCCCCccee
Confidence 333336799999999999999999988655543222111111111111111 111111111111111110000000
Q ss_pred eccCCCCcEEE--EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEE-EEEc-CCCCEEEEEeCCCc-----
Q 046871 212 AAKGHKESVYA--LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS-LLLD-STGRYCLSGSSDSM----- 282 (764)
Q Consensus 212 ~~~~~~~~V~~--l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~s-pdg~~l~sgs~Dg~----- 282 (764)
-.....++|.+ ++. +..+..+.-||.+.-+| ..|+.+.++. ..++|.. -+-+ |..+.|..+..+-.
T Consensus 173 w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p 247 (354)
T KOG4649|consen 173 WAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLP 247 (354)
T ss_pred hhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEecc
Confidence 00111122221 111 34566666778777777 5666666554 2233221 0111 22233333333322
Q ss_pred ---EEEEeCCCCeeeEEEeeecCceEEEEEc-CC---CCEEEEecCCCcEEEEeCC---------CCeEEEEe--ecCCC
Q 046871 283 ---IRLWDLGQQRCIHSYAVHTDSVWALAST-PT---FSHVYSGGRDLSLYLTDLA---------TRESLLLC--TGEHP 344 (764)
Q Consensus 283 ---I~iwdl~~~~~~~~l~~h~~~V~~l~~s-pd---~~~l~sgs~Dg~I~iwd~~---------~~~~~~~~--~~~~~ 344 (764)
-.+|..++|...+.+-. +-...+++ |. .+++..++.||++.|.-.+ .++..... .....
T Consensus 248 ~~ghL~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~e 324 (354)
T KOG4649|consen 248 IAGHLLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNE 324 (354)
T ss_pred ccceEEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcc
Confidence 23555555533322211 10112221 21 2456677889998887332 23322211 11222
Q ss_pred eEEEEeeCCc-eEEEeCCCcEEEeeCCCC
Q 046871 345 ILQLALHDDN-IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 345 V~~l~~spd~-l~~~s~dg~I~iwd~~~~ 372 (764)
|.+--.--++ |++|+.|..++.||+++.
T Consensus 325 IFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 325 IFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cccCCeEEccEEEEEEccCeEEEEecccc
Confidence 2111111124 999999999999999864
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.19 E-value=0.0021 Score=65.40 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=143.6
Q ss_pred EEEEeCCC--eEEEEeCCCc-EEEecCCCCCeeeeeccccCCce--EEEEEecCCCcEEEEEeC-----CCeEEEEeCCC
Q 046871 89 DAVLVGDN--TLVSCSSDTT-LKTWNCSSDGTCIRTLRQHSDYV--TCLAAAEKNSNIVASGGL-----GAEVFIWDIEA 158 (764)
Q Consensus 89 ~v~~s~d~--~l~s~s~Dg~-V~vWd~~~~~~~~~~l~~h~~~V--~~l~~~p~~~~~lasg~~-----dg~I~iwdl~~ 158 (764)
.++.+|+. .++.+-.-|+ ..+||+ .+++....+....+.- =--.|+ +++++|++.-. .|.|-|||...
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~-~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDC-RTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEc-CCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45666643 4556666555 567786 4455554443322211 124688 78888888743 57899999984
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe--
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-- 236 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-- 236 (764)
.. ..+..+..+.-.-..+.+.|||+.|+++-
T Consensus 87 ~~-----------------------------------------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 87 GY-----------------------------------------------RRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred Cc-----------------------------------------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 21 11122333444445666778886666552
Q ss_pred ----------------CCCeEEEEeCCCCceeEE--e--ccCCcCeEEEEEcCCCCEEEEEeCCCc-------EEEEeCC
Q 046871 237 ----------------TEKVVRVWDPRTGSKTIK--L--RGHTDNIRSLLLDSTGRYCLSGSSDSM-------IRLWDLG 289 (764)
Q Consensus 237 ----------------~dg~I~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~~l~sgs~Dg~-------I~iwdl~ 289 (764)
.+..+.+.|..+|+.+.+ + .-|...|+.+++.++|..++..-..|. |.+++.
T Consensus 120 I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~- 198 (305)
T PF07433_consen 120 IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR- 198 (305)
T ss_pred CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-
Confidence 233566778888988776 4 337789999999999987666544432 334433
Q ss_pred CCeeeEEEee-------ecCceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCC
Q 046871 290 QQRCIHSYAV-------HTDSVWALASTPTFSHVY-SGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTD 361 (764)
Q Consensus 290 ~~~~~~~l~~-------h~~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~d 361 (764)
++.+..+.. -.+-+-+|++++++.+++ |+=..+.+.+||..+++.+...... .+..++..++++++.+..
T Consensus 199 -g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 199 -GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred -CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCceEEeCCC
Confidence 222333322 235688999999998775 5667889999999999987665543 356777777776666666
Q ss_pred CcEEEee
Q 046871 362 SSVHRWP 368 (764)
Q Consensus 362 g~I~iwd 368 (764)
|.+...+
T Consensus 277 G~~~~~~ 283 (305)
T PF07433_consen 277 GQLIRLS 283 (305)
T ss_pred ccEEEcc
Confidence 6654443
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.00033 Score=75.70 Aligned_cols=111 Identities=11% Similarity=-0.007 Sum_probs=78.6
Q ss_pred EEEEEcC-CCCEEEEE----eCCCe----EEEEeCCCCceeE---EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 221 YALAMND-SGNLLVSG----GTEKV----VRVWDPRTGSKTI---KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 221 ~~l~~sp-~g~~l~sg----s~dg~----I~iwd~~~~~~~~---~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
.++.|+- +...+.+- +.+|. -.+|+....+... +--.....|.+.+++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 4566655 33444432 22332 3456665443211 11246778999999999999999999999999998
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
..+. ..+....-..+.++|+|+|..|++|+..|.+.+||+.-.
T Consensus 289 ~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 7653 333334556789999999999999999999999998644
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=7.9e-07 Score=97.87 Aligned_cols=219 Identities=16% Similarity=0.183 Sum_probs=154.1
Q ss_pred ccceeecccccceeEEEEeCC-CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe-CCC-eE
Q 046871 75 SCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG-LGA-EV 151 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~-~dg-~I 151 (764)
+..++|..|....+|++|+.+ +.|+.|+..|.|+++++ ..|.......+|...|+-+.-+ .++..+++.+ ... -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEc-cCcccccccccccccccccccc-CCcceeeeeccccCchH
Confidence 446677889999999999976 59999999999999997 5688888899999999999887 5565555443 333 46
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 231 (764)
.+|++...... ... -..-.++.|+.....
T Consensus 1170 aLW~~~s~~~~-----------------------------------------------~Hs----f~ed~~vkFsn~~q~ 1198 (1516)
T KOG1832|consen 1170 ALWDASSTGGP-----------------------------------------------RHS----FDEDKAVKFSNSLQF 1198 (1516)
T ss_pred HHhccccccCc-----------------------------------------------ccc----ccccceeehhhhHHH
Confidence 78888652111 011 122346777765555
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEec-c---CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEE
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIKLR-G---HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL 307 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~l~-~---h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l 307 (764)
-+.|+......+||+.++..+.++- + ..-.-++..|+|+.++++ .|| .+||++..+.++.|...+..+ .-
T Consensus 1199 r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G 1272 (1516)
T KOG1832|consen 1199 RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GG 1272 (1516)
T ss_pred HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cc
Confidence 5666666788999999998776632 1 122336788999998876 466 589999888888776544222 33
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEE
Q 046871 308 ASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVA 358 (764)
Q Consensus 308 ~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~ 358 (764)
.|+|+|..++.-+ -|||+++.+.+.....-. -..+.|+..| +.-|
T Consensus 1273 ~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld-qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD-QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred cccCCCceEEeec-----hhhhhHHHHHHhcCcccc-ceEEEeccCccchhh
Confidence 5899999888766 399999988776554322 2456777777 4433
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00035 Score=76.50 Aligned_cols=271 Identities=14% Similarity=0.110 Sum_probs=152.2
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeee-----c
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRT-----L 122 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~-----l 122 (764)
+..+++|+.|+.-|.+.+++-..+.. ......+....+..++.+++. +++.|+..|.|.++-+......... -
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 46789999999999999999887432 233333444445555666666 6677777888888876442211111 1
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
..|...|+|++|+ .++..+++|...|+|.+-.++.. ...
T Consensus 121 ~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~-~~~--------------------------------------- 159 (726)
T KOG3621|consen 121 KSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSR-QAF--------------------------------------- 159 (726)
T ss_pred ccCCceEEEEEec-ccccEEeecCCCceEEEEEechh-hhh---------------------------------------
Confidence 2378899999999 89999999999999999888751 000
Q ss_pred cCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeccCCc-CeEEEEEcCC----CCEEE
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTD-NIRSLLLDST----GRYCL 275 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~-~V~~l~~spd----g~~l~ 275 (764)
......+....+.|.-+.+.. +.+|++..... .+++++.++ ++.+-. ..+ .-...+|-|. .+-.+
T Consensus 160 ----~~~~q~il~~ds~IVQlD~~q-~~LLVStl~r~--~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~I 231 (726)
T KOG3621|consen 160 ----LSKSQEILSEDSEIVQLDYLQ-SYLLVSTLTRC--ILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQI 231 (726)
T ss_pred ----ccccceeeccCcceEEeeccc-ceehHhhhhhh--heeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceE
Confidence 000111223355666666542 33444433322 344443322 111111 111 0122334332 22233
Q ss_pred EEeCCCcEEEEeCC-CCeeeEEEee-------------ecC----------------ceEEEEEcCCCCEEEEecCCCcE
Q 046871 276 SGSSDSMIRLWDLG-QQRCIHSYAV-------------HTD----------------SVWALASTPTFSHVYSGGRDLSL 325 (764)
Q Consensus 276 sgs~Dg~I~iwdl~-~~~~~~~l~~-------------h~~----------------~V~~l~~spd~~~l~sgs~Dg~I 325 (764)
.++.-| .|+|... .|+.+++... +.. ....+.+-.+ ..+.+-+.-| |
T Consensus 232 ycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~-~~vLa~te~G-i 308 (726)
T KOG3621|consen 232 YCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHS-DRVLAWTEVG-I 308 (726)
T ss_pred EEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeec-ceEEEeecce-E
Confidence 333333 4777653 3444444321 000 0011111111 1233333333 8
Q ss_pred EEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCC
Q 046871 326 YLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~ 372 (764)
+|+|..+.+.+......+.|..+..+.+.|++-..|+.+++..+.+.
T Consensus 309 yv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 309 YVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EEEEeccceEEEeecCCCceeEEeecCceEEEEecCCceeEEEeehh
Confidence 88888887777666667778888888777888888887777776553
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.0026 Score=61.62 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=94.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEE
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALA 308 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~ 308 (764)
|++++.|+..|.+++.+..+|.+...+.....--......+++..+..|+.|++.+..|.++..++...+...+...+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 78899999999999999999988888764433223345678899999999999999999999999988775544444455
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCe--EEEEeecCCCeEEE-EeeCCceEEEeCCCcEEEee
Q 046871 309 STPTFSHVYSGGRDLSLYLTDLATRE--SLLLCTGEHPILQL-ALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~~~~V~~l-~~spd~l~~~s~dg~I~iwd 368 (764)
..|-...|+.+...|.+.-....+.. .+.......||.+- .+-...+..++-||.+.-++
T Consensus 143 i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD 205 (354)
T ss_pred ecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc
Confidence 56634456666666666665555542 22222334454332 11222255555666666666
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.01 E-value=0.0023 Score=68.89 Aligned_cols=249 Identities=16% Similarity=0.124 Sum_probs=132.7
Q ss_pred cCCCcEEEEE---------eCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeee
Q 046871 49 SNGVDYLFTG---------SRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCI 119 (764)
Q Consensus 49 S~d~~~L~sg---------s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~ 119 (764)
|||+++++.. +..+.+.|+|+++++ ...+......+....|+|++..++--.++.|.+++... +...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~-~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLAT-GQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTT-SEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEecCceEEEECCC-CCeE
Confidence 5788887763 234678999999843 33333336778899999998444444578899998643 3322
Q ss_pred e-ecccc----------------CCceEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 120 R-TLRQH----------------SDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 120 ~-~l~~h----------------~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
+ +..+- -+.-..+-|+ +++++||.... +..|..+.+...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~~~---------------------- 133 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLPDY---------------------- 133 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEEEE----------------------
T ss_pred EeccccceeEEcCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEeecc----------------------
Confidence 2 22220 1123567788 67777765543 344444443211
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCC---CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-Ee--
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH---KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI-KL-- 255 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~-~l-- 255 (764)
... .-.+..+.+-.-|.-... -.+.++|+.+++... ..
T Consensus 134 --------------------------------~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 134 --------------------------------SPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp --------------------------------SSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---H
T ss_pred --------------------------------CCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeecc
Confidence 000 112334443222222111 146778888876532 11
Q ss_pred --ccCCcCeEEEEEcCCCCEEEEE--eCCC---cEEEEeCCCCeeeEEEeeec-Cce---EEEEEc-CCCC-EEEEecCC
Q 046871 256 --RGHTDNIRSLLLDSTGRYCLSG--SSDS---MIRLWDLGQQRCIHSYAVHT-DSV---WALAST-PTFS-HVYSGGRD 322 (764)
Q Consensus 256 --~~h~~~V~~l~~spdg~~l~sg--s~Dg---~I~iwdl~~~~~~~~l~~h~-~~V---~~l~~s-pd~~-~l~sgs~D 322 (764)
......+..+.|.++++.|+.. +.+. .+.++|..++++...+.... ..| ....|. +++. ++.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 2334578899999999844433 3333 37777887776654444322 222 345554 5554 44455577
Q ss_pred Cc--EEEEeCCCCeEEEEeecCCCeEE-EEeeCCc---eEEEeC
Q 046871 323 LS--LYLTDLATRESLLLCTGEHPILQ-LALHDDN---IWVATT 360 (764)
Q Consensus 323 g~--I~iwd~~~~~~~~~~~~~~~V~~-l~~spd~---l~~~s~ 360 (764)
|. |++++..++....+..+.-.|.. +.+++++ .++|..
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC
Confidence 74 56667777776655556667755 5667776 445555
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.92 E-value=0.00076 Score=74.72 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=90.2
Q ss_pred EcCCCCEEEE-EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-------------------------
Q 046871 225 MNDSGNLLVS-GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS------------------------- 278 (764)
Q Consensus 225 ~sp~g~~l~s-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs------------------------- 278 (764)
+.+||+.+.. .-..+.+.+.|..+.+...++.- .+....+.++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3445554432 22334566666666555555432 12334555666666655543
Q ss_pred ---------------CCCcEEEEeCCC----C-eeeEEEeeecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCeE--
Q 046871 279 ---------------SDSMIRLWDLGQ----Q-RCIHSYAVHTDSVWALASTPTFSHVYSG-GRDLSLYLTDLATRES-- 335 (764)
Q Consensus 279 ---------------~Dg~I~iwdl~~----~-~~~~~l~~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~~~~~-- 335 (764)
.++.|.+.|.++ + +.+..+. -....+.+.++|||++++++ ..+.+|.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 235577788776 2 3333333 34567899999999998855 4589999999987552
Q ss_pred ----------EEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 336 ----------LLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 336 ----------~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
.......-.-...+|.++| ..+-.-|+.|-.||+..
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2333334455678899998 44455699999999875
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00083 Score=73.64 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=95.1
Q ss_pred CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCC
Q 046871 127 DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQ 206 (764)
Q Consensus 127 ~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 206 (764)
..|.--++. ....+++.|+.-|.+++|+-..+....
T Consensus 34 ~~v~lTc~d-st~~~l~~GsS~G~lyl~~R~~~~~~~------------------------------------------- 69 (726)
T KOG3621|consen 34 ARVKLTCVD-ATEEYLAMGSSAGSVYLYNRHTGEMRK------------------------------------------- 69 (726)
T ss_pred ceEEEEEee-cCCceEEEecccceEEEEecCchhhhc-------------------------------------------
Confidence 334444444 568999999999999999987643221
Q ss_pred CccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----Ee-ccCCcCeEEEEEcCCCCEEEEEeCC
Q 046871 207 GYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI-----KL-RGHTDNIRSLLLDSTGRYCLSGSSD 280 (764)
Q Consensus 207 ~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~-----~l-~~h~~~V~~l~~spdg~~l~sgs~D 280 (764)
....+..+.+..+..+++..++|.|+..|.|.++-+..+.+.. .+ +.|...|++++|++|+..+++|...
T Consensus 70 ----~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 70 ----LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred ----ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence 1112234566777888888899999999999999877643211 11 2377899999999999999999999
Q ss_pred CcEEEEeCCCC----eeeEEEeeecCceEEEEEc
Q 046871 281 SMIRLWDLGQQ----RCIHSYAVHTDSVWALAST 310 (764)
Q Consensus 281 g~I~iwdl~~~----~~~~~l~~h~~~V~~l~~s 310 (764)
|+|.+-.+.+. -..+.+..-.+.|..|...
T Consensus 146 Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 146 GKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 99998888662 1122333344566666655
No 332
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.92 E-value=0.014 Score=63.87 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=112.0
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
.|+||+. .|+.+..+.-..+.+.++.|. . ...|+.-..||.++++|+.... ....
T Consensus 62 ~I~iys~--sG~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~G~~-~fsl-------------------- 116 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLFGEF-QFSL-------------------- 116 (410)
T ss_pred EEEEECC--CCCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCCCce-eech--------------------
Confidence 4888884 466666665545899999998 4 4556666789999999987432 0000
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---c-----
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS-KTIKL---R----- 256 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~-~~~~l---~----- 256 (764)
+.......-....+....+..+| ++.-..++.+.+.+-.... ....+ .
T Consensus 117 ---------------------~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~ 173 (410)
T PF04841_consen 117 ---------------------GEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTK 173 (410)
T ss_pred ---------------------hhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccc
Confidence 00000011111222222333234 2222233333333211111 11111 1
Q ss_pred --cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 257 --GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 257 --~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
.+........++.+....+....++.+.+.+-...+. +. ..+++..|+.||++++++.-..+|.+.+.+.+-.+
T Consensus 174 ~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 174 FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred cccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 0111100123444555555555556666444322111 21 24689999999999999999999999999876666
Q ss_pred EEEEeecC--CCeEEEEeeCCceEEEeCCCcEEEee
Q 046871 335 SLLLCTGE--HPILQLALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 335 ~~~~~~~~--~~V~~l~~spd~l~~~s~dg~I~iwd 368 (764)
.+..+... .....+.|..+.-++......|.+..
T Consensus 250 ~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 250 KLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred eeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 65555543 56778888877622222244455543
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.0097 Score=59.64 Aligned_cols=198 Identities=11% Similarity=0.128 Sum_probs=116.2
Q ss_pred eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccc
Q 046871 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISA 200 (764)
Q Consensus 121 ~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 200 (764)
.+.+-...+..++|.|.++.++++....+.|...+.+.. ...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-vlr------------------------------------- 57 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-VLR------------------------------------- 57 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE-------------------------------------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-EEE-------------------------------------
Confidence 455555679999999666778888888999888887531 110
Q ss_pred cccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eeEEec-----cCCcCeEEEEEcC
Q 046871 201 HTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS------KTIKLR-----GHTDNIRSLLLDS 269 (764)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~------~~~~l~-----~h~~~V~~l~~sp 269 (764)
...+.+ .+..-.|++..++.++++--.++.+.++++.... ....+. .+...+..++|++
T Consensus 58 ---------~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~ 127 (248)
T PF06977_consen 58 ---------RIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP 127 (248)
T ss_dssp ---------EEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET
T ss_pred ---------EEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC
Confidence 011222 3456788888777777766668999988873321 111121 2445689999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC---CeeeEEEe--------eecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCeEEE
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQ---QRCIHSYA--------VHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~---~~~~~~l~--------~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~~~~ 337 (764)
.++.|+.+-...-.++|.+.. ...+.... .....+.+++++|.. .+++....+..|..+| .+|+.+.
T Consensus 128 ~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~ 206 (248)
T PF06977_consen 128 KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS 206 (248)
T ss_dssp TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE
T ss_pred CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE
Confidence 988888887776667776643 22222111 123447889999864 5556777788899999 5666665
Q ss_pred EeecC----------CCeEEEEeeCCc-eEEEeCCCcEEEe
Q 046871 338 LCTGE----------HPILQLALHDDN-IWVATTDSSVHRW 367 (764)
Q Consensus 338 ~~~~~----------~~V~~l~~spd~-l~~~s~dg~I~iw 367 (764)
.+.-. ...-.|+|.++| |++.++-+..++|
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 55432 246789999999 9999987766665
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.84 E-value=0.0032 Score=73.20 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=124.7
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC--
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC-- 112 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~-- 112 (764)
+.|.++.|. .+..-++.+..+|.|.+-|.++...+.+ ..-...|.+++|+||+ .++..+.++++.+-+-
T Consensus 69 ~~i~s~~fl-----~d~~~i~v~~~~G~iilvd~et~~~eiv---g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFL-----ADTNSICVITALGDIILVDPETLELEIV---GNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEEEEEe-----cccceEEEEecCCcEEEEcccccceeee---eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 678899884 6777888888899999998887543333 3346789999999997 6777777677665331
Q ss_pred --CCC------------------Ceeeeecccc---------------------CCceEEEEEecCCCcEEEEE-----e
Q 046871 113 --SSD------------------GTCIRTLRQH---------------------SDYVTCLAAAEKNSNIVASG-----G 146 (764)
Q Consensus 113 --~~~------------------~~~~~~l~~h---------------------~~~V~~l~~~p~~~~~lasg-----~ 146 (764)
-.. |+....+++. .+.=..|.|- .|+.++|+. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEEEEEeccC
Confidence 000 0000111110 1112357887 788898883 2
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc
Q 046871 147 LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226 (764)
Q Consensus 147 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s 226 (764)
..+.|++||-+...... -....+.-.+++|-
T Consensus 220 ~~RkirV~drEg~Lns~-------------------------------------------------se~~~~l~~~LsWk 250 (1265)
T KOG1920|consen 220 GTRKIRVYDREGALNST-------------------------------------------------SEPVEGLQHSLSWK 250 (1265)
T ss_pred CceeEEEecccchhhcc-------------------------------------------------cCcccccccceeec
Confidence 33789999987321000 01112223578999
Q ss_pred CCCCEEEEE---eCCCeEEEEeCCCCce----eEEeccCCcCeEEEEEcCCCCEEEE---EeCCCcEEEEeCCCC
Q 046871 227 DSGNLLVSG---GTEKVVRVWDPRTGSK----TIKLRGHTDNIRSLLLDSTGRYCLS---GSSDSMIRLWDLGQQ 291 (764)
Q Consensus 227 p~g~~l~sg---s~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s---gs~Dg~I~iwdl~~~ 291 (764)
|.|..+++- +.|+.|.++.- +|-. ...+......+..++|+.++..|++ ......|++|-+.+.
T Consensus 251 Psgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 251 PSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 999988875 34567888874 4432 2223333345899999999999887 444455999988764
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.0019 Score=69.95 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 046871 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR 292 (764)
Q Consensus 214 ~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~ 292 (764)
...+..|.+++++|+...++.|+.||.|.+||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 356788999999999999999999999999998766332 33345567899999999999999999999999986443
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.79 E-value=0.04 Score=62.33 Aligned_cols=305 Identities=13% Similarity=0.150 Sum_probs=159.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeecccc-ccee----------EEEEeCCCeEEEEeCCCcEEEecCCCCCeeee
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHV-DWVN----------DAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~----------~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~ 120 (764)
+..|+.++.++.|.-.|..+ ++.+-++.... ..+. .+++. +++++.++.|+.|.-.|. .+++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~T--Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa-~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKT--GKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDA-KTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCC--CceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEEC-CCCCEEe
Confidence 56788888888999999888 44444332110 0111 12222 356778888999999996 4566554
Q ss_pred eccc--cCC--ceEE-EEEecCCCcEEEEEe------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 121 TLRQ--HSD--YVTC-LAAAEKNSNIVASGG------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 121 ~l~~--h~~--~V~~-l~~~p~~~~~lasg~------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
.... +.. .+.+ -... ++ .++.+. .+|.|.-+|.++++..-+........... .......
T Consensus 145 ~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~--~~~~~~~----- 214 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL--DKADKPV----- 214 (527)
T ss_pred ecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc--ccccccc-----
Confidence 3321 111 1111 1111 33 444443 36889999999886653322111100000 0000000
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEE-EEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcee
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVY-ALAMNDSGNLLVSGGTE----------------KVVRVWDPRTGSKT 252 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~-~l~~sp~g~~l~sgs~d----------------g~I~iwd~~~~~~~ 252 (764)
........|.. . ....-...+. .+++.+...+++.+..+ ..|.-.|+++|+..
T Consensus 215 ---~~~~~~~tw~~----~---~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~ 284 (527)
T TIGR03075 215 ---GGEPGAKTWPG----D---AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK 284 (527)
T ss_pred ---ccccccCCCCC----C---ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE
Confidence 00000000000 0 0000111121 23444544444444311 15777899999988
Q ss_pred EEeccCCcC---------eEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCeeeEE--------E----eeecC-ce---
Q 046871 253 IKLRGHTDN---------IRSLLLDSTGR---YCLSGSSDSMIRLWDLGQQRCIHS--------Y----AVHTD-SV--- 304 (764)
Q Consensus 253 ~~l~~h~~~---------V~~l~~spdg~---~l~sgs~Dg~I~iwdl~~~~~~~~--------l----~~h~~-~V--- 304 (764)
..++..... ..-+.+..+|+ .++.+..+|.+++.|..+|+.+.. + ...+. ++
T Consensus 285 W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~ 364 (527)
T TIGR03075 285 WHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVP 364 (527)
T ss_pred EeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccCh
Confidence 877642221 11222334676 678999999999999999988622 1 00000 00
Q ss_pred -------------------------EEEEEcCCCCEEEEecCC---------------------------------CcEE
Q 046871 305 -------------------------WALASTPTFSHVYSGGRD---------------------------------LSLY 326 (764)
Q Consensus 305 -------------------------~~l~~spd~~~l~sgs~D---------------------------------g~I~ 326 (764)
..++++|+..+++....+ |.|.
T Consensus 365 ~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~ 444 (527)
T TIGR03075 365 EARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLI 444 (527)
T ss_pred hhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEE
Confidence 125667766666543332 4577
Q ss_pred EEeCCCCeEEEEeecCCCe-EEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 327 LTDLATRESLLLCTGEHPI-LQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 327 iwd~~~~~~~~~~~~~~~V-~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
-+|+.+++.+.......+. ........+ +++++.+|.++.+|.++++.+-.+.-
T Consensus 445 AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 445 AWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred EEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 8888888887766654432 222223334 66777799999999999998776654
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=9.2e-06 Score=87.20 Aligned_cols=198 Identities=20% Similarity=0.260 Sum_probs=130.1
Q ss_pred eeEEEEeCC--C-eEEEEeCCCcEEEecCCCCCee-eeeccccCCceEEEEEecCCCcEEEEEe----CCCeEEEEeCCC
Q 046871 87 VNDAVLVGD--N-TLVSCSSDTTLKTWNCSSDGTC-IRTLRQHSDYVTCLAAAEKNSNIVASGG----LGAEVFIWDIEA 158 (764)
Q Consensus 87 V~~v~~s~d--~-~l~s~s~Dg~V~vWd~~~~~~~-~~~l~~h~~~V~~l~~~p~~~~~lasg~----~dg~I~iwdl~~ 158 (764)
+.|+++.-+ . .++.|..+|.|-+-.+..+... .....+|..+.++++|.+-|.++||.|- .|..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 455555433 2 6788888999988876443322 4456678899999999988888888873 355799999987
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc-CCCCcEEEEEEcCCCCEEEEEeC
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK-GHKESVYALAMNDSGNLLVSGGT 237 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~V~~l~~sp~g~~l~sgs~ 237 (764)
.....+... .+. +......+++|..+.+++.+|..
T Consensus 139 ~ltvPke~~--------------------------------------------~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 139 LLTVPKESP--------------------------------------------LFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ccCCCcccc--------------------------------------------ccccccccCccccccccCcchhhcccc
Confidence 532111000 000 12233447888888889999999
Q ss_pred CCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeC-CC-CeeeEEEeeec----CceEEEEE
Q 046871 238 EKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDL-GQ-QRCIHSYAVHT----DSVWALAS 309 (764)
Q Consensus 238 dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl-~~-~~~~~~l~~h~----~~V~~l~~ 309 (764)
...+.++|++.. .....+ .+..+..+.++| .+.++++-. ||.|.+||. +. ..++..+.... ..+..++|
T Consensus 175 sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred cchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 999999999843 222222 344667788888 778877665 999999993 32 22233332222 24889999
Q ss_pred cCCC-CEEEEecC-CCcEEEEeCC
Q 046871 310 TPTF-SHVYSGGR-DLSLYLTDLA 331 (764)
Q Consensus 310 spd~-~~l~sgs~-Dg~I~iwd~~ 331 (764)
.|.. ..+++..+ .++|+.+|+.
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccc
Confidence 9854 34455554 4789999985
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.74 E-value=0.0024 Score=69.83 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=121.9
Q ss_pred ccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE-eCCCCC
Q 046871 82 SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW-DIEAAL 160 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw-dl~~~~ 160 (764)
...-....+.++|+++++..+.||...|+.. ...+... .+.-...+|. . .+.+|+-...+.|.++ ++...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~-~~~r~k~-----~G~g~~~vw~-~-~n~yAv~~~~~~I~I~kn~~~~- 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTA-LAWRNKA-----FGSGLSFVWS-S-RNRYAVLESSSTIKIYKNFKNE- 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEET-TTTEEEE-----EEE-SEEEE--T-SSEEEEE-TTS-EEEEETTEE--
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEc-cCCcccc-----cCceeEEEEe-c-CccEEEEECCCeEEEEEcCccc-
Confidence 3444578899999997666688888888883 2222211 2334567888 4 5567777778889996 33221
Q ss_pred CCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 046871 161 APSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKV 240 (764)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~ 240 (764)
.. ..+. ....+..|-. |.+|...+.+ .
T Consensus 101 ~~------------------------------------------------k~i~-~~~~~~~If~---G~LL~~~~~~-~ 127 (443)
T PF04053_consen 101 VV------------------------------------------------KSIK-LPFSVEKIFG---GNLLGVKSSD-F 127 (443)
T ss_dssp TT------------------------------------------------------SS-EEEEE----SSSEEEEETT-E
T ss_pred cc------------------------------------------------eEEc-CCcccceEEc---CcEEEEECCC-C
Confidence 00 0000 0112333322 7777776554 8
Q ss_pred EEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------eeeEEEeeecCceEEEEE
Q 046871 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ-----------RCIHSYAVHTDSVWALAS 309 (764)
Q Consensus 241 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~-----------~~~~~l~~h~~~V~~l~~ 309 (764)
|.+||..+++.+.++... +|..+.|+++|.+++..+.+ ++.+++.... .....+..-...|.+.+|
T Consensus 128 i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W 204 (443)
T PF04053_consen 128 ICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCW 204 (443)
T ss_dssp EEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEE
T ss_pred EEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEE
Confidence 999999999999998733 48999999999999988755 6777765322 133344333678889999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeC--CceEEEeCCCcEEEeeCCC
Q 046871 310 TPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHD--DNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 310 spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~sp--d~l~~~s~dg~I~iwd~~~ 371 (764)
..+ -+++|... .|+. +-.|+.........++.=+...+ +.++....|+.|..+.++.
T Consensus 205 ~~d-~fiYtT~~--~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 205 VED-CFIYTTSN--HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ETT-EEEEE-TT--EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcC-EEEEEcCC--eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 876 45555543 5655 55566555555567777788888 4488888888888887753
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00066 Score=75.33 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=78.5
Q ss_pred ccCCCcEEEEEe----CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeec
Q 046871 48 VSNGVDYLFTGS----RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTL 122 (764)
Q Consensus 48 ~S~d~~~L~sgs----~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l 122 (764)
|+|...++|+++ +.|+|.|+- ++++...-.+..-| +++++|+|.. .|+.+-.-|.+.+|.. .+.+.....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~-~~~e~htv~ 97 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKT-NTTETHTVV 97 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEec-CCceeeeec
Confidence 467788888876 458898884 34333322233333 5669999987 6778888899999995 334444455
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCC
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEA 158 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~ 158 (764)
..|..+|..+.|+ +++..++++..-|.+.+|....
T Consensus 98 ~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cCCCCCceeEEec-CCCCeEEEcCCCceeEEEEeee
Confidence 6799999999999 8899999999999999998863
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.71 E-value=1.2e-05 Score=86.44 Aligned_cols=197 Identities=18% Similarity=0.252 Sum_probs=132.6
Q ss_pred CceEEEEEec-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCC
Q 046871 127 DYVTCLAAAE-KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQS 205 (764)
Q Consensus 127 ~~V~~l~~~p-~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 205 (764)
.++.|+++.- .+..+++.|..+|.|.+-..+...-.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------- 93 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------- 93 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------------------------
Confidence 4567777652 23468889999999999887653110
Q ss_pred CCccceeccCCCCcEEEEEEcC-CCCEEEEEe----CCCeEEEEeCCCC--ce--eEEecc-CCcCeEEEEEcCCCCEEE
Q 046871 206 QGYVPIAAKGHKESVYALAMND-SGNLLVSGG----TEKVVRVWDPRTG--SK--TIKLRG-HTDNIRSLLLDSTGRYCL 275 (764)
Q Consensus 206 ~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs----~dg~I~iwd~~~~--~~--~~~l~~-h~~~V~~l~~spdg~~l~ 275 (764)
......++....++++|++ |.++||+|- .|..+.|||+.++ .+ ...|.+ -.....+++|..+.+.++
T Consensus 94 ---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvl 170 (783)
T KOG1008|consen 94 ---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVL 170 (783)
T ss_pred ---cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhh
Confidence 0122456678899999998 677888874 3567999999876 22 122222 334566899998999999
Q ss_pred EEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC-CCCEEEEecCCCcEEEEe-CCCCe-EEEEeec-----CCCeEE
Q 046871 276 SGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP-TFSHVYSGGRDLSLYLTD-LATRE-SLLLCTG-----EHPILQ 347 (764)
Q Consensus 276 sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd-~~~~~-~~~~~~~-----~~~V~~ 347 (764)
+|.....+.++|++... .......+..+..+..+| .+.++++-. ||.|.+|| .+.-+ ++..+.+ ...+..
T Consensus 171 aGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 171 AGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred cccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 99999999999997321 111222344566778888 667777665 99999999 33322 2233332 224899
Q ss_pred EEeeCCc---eEEEeCC-CcEEEeeCCC
Q 046871 348 LALHDDN---IWVATTD-SSVHRWPAEG 371 (764)
Q Consensus 348 l~~spd~---l~~~s~d-g~I~iwd~~~ 371 (764)
++|.|.. +++.+.| ++|+++++..
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEecccc
Confidence 9999976 6666664 6899999853
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.67 E-value=0.0081 Score=62.17 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=96.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE---------
Q 046871 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY--------- 297 (764)
Q Consensus 227 p~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l--------- 297 (764)
..++.|+.|+.+| |.+++........... +...|..+...++-+.|++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999988 8999983333333322 233499999999888777665 599999998764433311
Q ss_pred -----eeecCceEEEE--EcCCCCEEEEecCCCcEEEEeCCCC-----eEEEEeecCCCeEEEEeeCCceEEEeCCCcEE
Q 046871 298 -----AVHTDSVWALA--STPTFSHVYSGGRDLSLYLTDLATR-----ESLLLCTGEHPILQLALHDDNIWVATTDSSVH 365 (764)
Q Consensus 298 -----~~h~~~V~~l~--~spd~~~l~sgs~Dg~I~iwd~~~~-----~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~ 365 (764)
......+...+ -...+...+......+|.+|..... .....+.....+..++|.++.+++|..++ ..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FY 160 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eE
Confidence 11222344444 1233333344444558888877542 45566667889999999988888887554 77
Q ss_pred EeeCCCCCCceee
Q 046871 366 RWPAEGRNPQKVF 378 (764)
Q Consensus 366 iwd~~~~~~~~~~ 378 (764)
+.|+.++.....+
T Consensus 161 ~idl~~~~~~~l~ 173 (275)
T PF00780_consen 161 LIDLNTGSPSELL 173 (275)
T ss_pred EEecCCCCceEEe
Confidence 8888877665554
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.64 E-value=0.0065 Score=65.55 Aligned_cols=236 Identities=14% Similarity=0.105 Sum_probs=125.2
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-----------------------------------------c
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-----------------------------------------S 75 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-----------------------------------------~ 75 (764)
.|+++.| +++..-|++|...|.|.||.....+. .
T Consensus 3 ~v~~vs~-----a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSF-----APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEE-----ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEe-----cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence 4778887 67778899999999999987543110 0
Q ss_pred cceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeee--ccc------cCCceEEEEEec----CCC---c
Q 046871 76 CSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRT--LRQ------HSDYVTCLAAAE----KNS---N 140 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~--l~~------h~~~V~~l~~~p----~~~---~ 140 (764)
...-++...+.|++++.++=|+++.|..+|.+.|.|+ .....+.. +.. ....|+++.|.- .|+ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~-RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDL-RGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEET-TTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCcEEEEEecCCcEEEEEC-CCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 0111233468899999987799999999999999998 43443332 222 345788888862 222 4
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcE
Q 046871 141 IVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESV 220 (764)
Q Consensus 141 ~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V 220 (764)
.+++|...|.+.+|.+.-.... .+...... . ...+.++|
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g------------------~f~v~~~~--~---------------------~~~~~~~i 195 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNG------------------RFSVQFAG--A---------------------TTNHDSPI 195 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-------------------EEEEEEE--E---------------------E--SS---
T ss_pred EEEEEeCCCCEEEEEEecCCCC------------------ceEEEEee--c---------------------cccCCCce
Confidence 7889999999999988421000 00000000 0 01112222
Q ss_pred EEEE-EcC--------------------CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc-----CCCCEE
Q 046871 221 YALA-MND--------------------SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD-----STGRYC 274 (764)
Q Consensus 221 ~~l~-~sp--------------------~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s-----pdg~~l 274 (764)
..+. ++. .-+.++....+..++++..-+.+...+.....-....+++- ..+..|
T Consensus 196 ~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~L 275 (395)
T PF08596_consen 196 LSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCL 275 (395)
T ss_dssp -EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEE
T ss_pred EEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEE
Confidence 2221 100 01123444456789999998887776655332233344442 346678
Q ss_pred EEEeCCCcEEEEeCCCCeeeEEEeeec----CceEEEEEcCCCCEEEEe
Q 046871 275 LSGSSDSMIRLWDLGQQRCIHSYAVHT----DSVWALASTPTFSHVYSG 319 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~~~~~~l~~h~----~~V~~l~~spd~~~l~sg 319 (764)
++-..+|.|++|.+-.-+.+..+..+. ..+....++++|..++-.
T Consensus 276 v~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 276 VCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp EEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred EEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEe
Confidence 888999999999999988888776532 123344456666555433
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.053 Score=61.32 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=65.8
Q ss_pred CCeEEEEeCCCCceeEEeccCCc-------------------------------Ce-EEEEEcCCCCEEEEEeCC-----
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHTD-------------------------------NI-RSLLLDSTGRYCLSGSSD----- 280 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~~-------------------------------~V-~~l~~spdg~~l~sgs~D----- 280 (764)
+|.|..+|.++|+.+.++..-.. .+ ..+++.+...+++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 68899999999988776532110 11 134667766666665522
Q ss_pred C-----------cEEEEeCCCCeeeEEEeeecCceEE---------EEEcCCCC---EEEEecCCCcEEEEeCCCCeEE
Q 046871 281 S-----------MIRLWDLGQQRCIHSYAVHTDSVWA---------LASTPTFS---HVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 281 g-----------~I~iwdl~~~~~~~~l~~h~~~V~~---------l~~spd~~---~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
+ .|.-.|+++|+..-.++.....+|. +....+|+ .++.+..+|.+++.|-.+|+.+
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 5667788999988777643322222 22224665 7789999999999999999876
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.098 Score=57.25 Aligned_cols=213 Identities=9% Similarity=0.052 Sum_probs=112.9
Q ss_pred cCCCcEEEEEeCC----------C-cEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe
Q 046871 49 SNGVDYLFTGSRD----------G-TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT 117 (764)
Q Consensus 49 S~d~~~L~sgs~D----------g-~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~ 117 (764)
+|.|..+|....+ . .|+||+.. ++.+.++.--.+.|.++.|+.+..|+....||.++++|+. +.
T Consensus 37 a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s---G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~--G~ 111 (410)
T PF04841_consen 37 APYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS---GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF--GE 111 (410)
T ss_pred cCCCceEEEEecCcccccccCCCCcEEEEECCC---CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC--Cc
Confidence 4556666665333 1 48888877 4455555433488999999998889999999999999973 33
Q ss_pred eeeecc-------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEe-CCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 118 CIRTLR-------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD-IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 118 ~~~~l~-------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwd-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
....+. -....+....+. .+|-.+.+ .++.+.+-. ..............
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~-~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p-------------------- 168 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFY-KNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIP-------------------- 168 (410)
T ss_pred eeechhhhccccCcccccccccccC-CCCEEEEC--CCCeEEEEeCccccchhhccccCC--------------------
Confidence 311111 111122222332 23433333 334343332 11110000000000
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
. .......+........++.+....+....++.+.+.+-...+. +. ..+++..|++||
T Consensus 169 -----------------~-~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp 226 (410)
T PF04841_consen 169 -----------------G-LWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP 226 (410)
T ss_pred -----------------C-cccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC
Confidence 0 0000000000000023344455555555666676555333222 22 346899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-cCceEEEEEcC
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-TDSVWALASTP 311 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-~~~V~~l~~sp 311 (764)
+|++++.-..+|.+.+.+..-.+.+..+... ......+.|.-
T Consensus 227 ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 227 NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 9999999999999999987666666666544 23445566643
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.60 E-value=0.024 Score=58.54 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCCEEEEEeC---CC-------cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC-EEEEe-cCCCcEEEE
Q 046871 261 NIRSLLLDSTGRYCLSGSS---DS-------MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS-HVYSG-GRDLSLYLT 328 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~---Dg-------~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~-~l~sg-s~Dg~I~iw 328 (764)
.-.-+++++..+.|++--. ++ .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++. ..++.+.+|
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 3445777776666554321 11 488999999999999874 23577999987665 66654 457999999
Q ss_pred eCCCCeEEEEeecCC
Q 046871 329 DLATRESLLLCTGEH 343 (764)
Q Consensus 329 d~~~~~~~~~~~~~~ 343 (764)
|..+|+.+..+..-+
T Consensus 318 D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 318 DAATGKLVRSIEQLG 332 (342)
T ss_dssp ETTT--EEEEE---S
T ss_pred eCcCCcEEeehhccC
Confidence 999999988877533
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.59 E-value=0.041 Score=59.49 Aligned_cols=237 Identities=12% Similarity=0.099 Sum_probs=121.8
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC-CCCCCCcCCcCccccCCCCCCcccceeecCCCCcc-cccccC-
Q 046871 128 YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS-KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSI-SAHTSQ- 204 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i-~~~~~~- 204 (764)
.|..+.|. .+..-|++|...|.|.+|......... +......+. ....+........+ .+.+..
T Consensus 3 ~v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~di~~r~~ 69 (395)
T PF08596_consen 3 SVTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDY------------NFRRFSLNNSPGKLTDISDRAP 69 (395)
T ss_dssp -EEEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------------------S--GGGSS-SEEE-GGG--
T ss_pred eEEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCc------------ccccccccCCCcceEEehhhCC
Confidence 47889999 677888899999999998876532221 100000000 00000000000110 011100
Q ss_pred ---CCCc-cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--cc------CCcCeEEEEEcC---
Q 046871 205 ---SQGY-VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL--RG------HTDNIRSLLLDS--- 269 (764)
Q Consensus 205 ---~~~~-~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l--~~------h~~~V~~l~~sp--- 269 (764)
..+. ....+....++|++++.+. =.+++.|..+|.+.|.|+|....+..- .. ....|+++.|+-
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred cccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 1111 2223445589999999984 458999999999999999887776652 22 234678888762
Q ss_pred --CC---CEEEEEeCCCcEEEEeCC---CCeeeEEE----eeecCceEEEE-EcCC-C-------------------CEE
Q 046871 270 --TG---RYCLSGSSDSMIRLWDLG---QQRCIHSY----AVHTDSVWALA-STPT-F-------------------SHV 316 (764)
Q Consensus 270 --dg---~~l~sgs~Dg~I~iwdl~---~~~~~~~l----~~h~~~V~~l~-~spd-~-------------------~~l 316 (764)
|+ -.|++|+..|.+.+|.+- .++....+ ..+.++|..|. ++.+ | ..+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 33 368899999999999874 12222222 23556666665 3222 1 123
Q ss_pred EEecCCCcEEEEeCCCCeEEEEeecCCC--eEEEEee-----CCc--eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 317 YSGGRDLSLYLTDLATRESLLLCTGEHP--ILQLALH-----DDN--IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 317 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--V~~l~~s-----pd~--l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
+....+..++++...+.+...... ..+ ...+++- ..+ |++-..+|.|++|.+..-+.+..+.
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred EEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 344447789999998777655444 332 2233442 233 8888899999999998877766554
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.59 E-value=0.14 Score=54.13 Aligned_cols=297 Identities=12% Similarity=0.091 Sum_probs=122.8
Q ss_pred EEeecccccCCCcEEEE-EeCCCc--EEEEeCCCCCCccceeecccc-cceeEEEEeCCC-eEEEEeCCCcEEEecCCCC
Q 046871 41 LAVLKSSVSNGVDYLFT-GSRDGT--LKRWSLADDVGSCSATFESHV-DWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 41 l~~~~~~~S~d~~~L~s-gs~Dg~--I~iWd~~~~~~~~~~~l~~h~-~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~ 115 (764)
+-|...+|.+||+.|+- +..||. +.+-|+.+++ +.+|..+. .......+++++ .++-......|+--|+..
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T- 111 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT- 111 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-
Confidence 66777888999976555 444655 5555777633 44444332 223345566665 555455556777777633
Q ss_pred CeeeeeccccCCceEEEEEe-cCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 116 GTCIRTLRQHSDYVTCLAAA-EKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 116 ~~~~~~l~~h~~~V~~l~~~-p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
.+....+....+.+-...|. ..++..++-.-..+. |... .. ....+........
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~----d~~~---l~------------------~~~~f~e~~~a~p 166 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE----DWKP---LT------------------KWKGFREFYEARP 166 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG----G--------------------------SHHHHHHHHHC--
T ss_pred CcEEEEEECCcccccccceeeCCCccEEEEEEEeeh----hccC---cc------------------ccHHHHHHHhhCC
Confidence 43333444445555445554 233444332211000 0000 00 0000000000000
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeC---CC-eEEEEeCC-CCceeEEeccCCc--CeEEEE
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGT---EK-VVRVWDPR-TGSKTIKLRGHTD--NIRSLL 266 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~---dg-~I~iwd~~-~~~~~~~l~~h~~--~V~~l~ 266 (764)
...+...+.. .+. ...+......+.-+.|+|. ..+|+.|-+ +. .-|||-++ .+.....+..+.. .+..=-
T Consensus 167 ~~~i~~idl~-tG~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 167 HCRIFTIDLK-TGE-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp -EEEEEEETT-T---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred CceEEEEECC-CCc-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 0001111111 111 1222234556677889984 444444432 22 12555433 2344444443332 344456
Q ss_pred EcCCCCEEEEE-----eCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC----------------cE
Q 046871 267 LDSTGRYCLSG-----SSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL----------------SL 325 (764)
Q Consensus 267 ~spdg~~l~sg-----s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg----------------~I 325 (764)
|.|||..|.-- +.+..|.-+|+.+++...... ......+..++|+++++-=+.|. .|
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence 89999876542 224467778888876543332 22445566689999887433331 46
Q ss_pred EEEeCCCCeEEEEeecCC-----------CeEEEEeeCCc---eEEEeCCCcEEEeeCC
Q 046871 326 YLTDLATRESLLLCTGEH-----------PILQLALHDDN---IWVATTDSSVHRWPAE 370 (764)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~-----------~V~~l~~spd~---l~~~s~dg~I~iwd~~ 370 (764)
+++++..+.......|.. .=....|+||+ |+.+...|...||-++
T Consensus 323 ~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 323 YLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 678888777655544421 12467899999 7777778887777543
No 348
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.07 Score=55.13 Aligned_cols=239 Identities=12% Similarity=0.065 Sum_probs=130.5
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++.|+.|..+| +.++++.......... +...|..+... ++-+.+++-+ |+.+.++++................
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~-- 79 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK-- 79 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEe-cccCEEEEEc-CCccEEEEchhhccccccccccccc--
Confidence 34788898888 8999872223333332 22339999998 4445544443 4999999998643222110000000
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEE--EcCCCCEEEEEeCCCeEEEEeCCCC---
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALA--MNDSGNLLVSGGTEKVVRVWDPRTG--- 249 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~--~sp~g~~l~sgs~dg~I~iwd~~~~--- 249 (764)
.............+...+ -...+...++....+.|.+|.....
T Consensus 80 --------------------------------~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~ 127 (275)
T PF00780_consen 80 --------------------------------SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS 127 (275)
T ss_pred --------------------------------cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc
Confidence 000000011122233333 1123333344444558888876543
Q ss_pred --ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec------------CceEEEEEcCCCCE
Q 046871 250 --SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT------------DSVWALASTPTFSH 315 (764)
Q Consensus 250 --~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~------------~~V~~l~~spd~~~ 315 (764)
+...++. -.+.+.+++|. ++.++.|..++ ..+.|+.++.....+.... .++..+.. +++.+
T Consensus 128 f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 202 (275)
T PF00780_consen 128 FSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEF 202 (275)
T ss_pred ccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceE
Confidence 3445554 45788999998 66777776544 7788998766544432111 12333333 34566
Q ss_pred EEEecCCCcEEEEeCCCCeEEE--EeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecC
Q 046871 316 VYSGGRDLSLYLTDLATRESLL--LCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 316 l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~ 381 (764)
|++- |..-.+.|. .|+... .+.-......+++....+++.+. +.|.||++.+++.++.+...
T Consensus 203 Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 203 LLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEEECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 6653 333333344 333322 33334566777776666555554 55999999999998888743
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.53 E-value=0.012 Score=64.57 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=92.0
Q ss_pred ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccccc
Q 046871 124 QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTS 203 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 203 (764)
...-....+.++ |+++.++.++ ||...++.....
T Consensus 30 ~~~~~p~~ls~n-pngr~v~V~g-~geY~iyt~~~~-------------------------------------------- 63 (443)
T PF04053_consen 30 SCEIYPQSLSHN-PNGRFVLVCG-DGEYEIYTALAW-------------------------------------------- 63 (443)
T ss_dssp E-SS--SEEEE--TTSSEEEEEE-TTEEEEEETTTT--------------------------------------------
T ss_pred CCCcCCeeEEEC-CCCCEEEEEc-CCEEEEEEccCC--------------------------------------------
Confidence 344567889999 6788888854 667777763221
Q ss_pred CCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcE
Q 046871 204 QSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMI 283 (764)
Q Consensus 204 ~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I 283 (764)
.....+.-...+|.+++ .+|+-...+.|.++.--..+....++. ...+..|.. |..|+..+.+ .|
T Consensus 64 ---------r~k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i 128 (443)
T PF04053_consen 64 ---------RNKAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FI 128 (443)
T ss_dssp ---------EEEEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EE
T ss_pred ---------cccccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CE
Confidence 01113445577888854 466666688899963223333233332 223555533 7777777544 89
Q ss_pred EEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-----------eEEEEeec-CCCeEEEEee
Q 046871 284 RLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-----------ESLLLCTG-EHPILQLALH 351 (764)
Q Consensus 284 ~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-----------~~~~~~~~-~~~V~~l~~s 351 (764)
.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+.+++.... ........ ...|.+.+|.
T Consensus 129 ~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~ 205 (443)
T PF04053_consen 129 CFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV 205 (443)
T ss_dssp EEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE
T ss_pred EEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEE
Confidence 99999999999998743 48999999999999988755 6777765433 13333333 6678888887
Q ss_pred CCc
Q 046871 352 DDN 354 (764)
Q Consensus 352 pd~ 354 (764)
.+-
T Consensus 206 ~d~ 208 (443)
T PF04053_consen 206 EDC 208 (443)
T ss_dssp TTE
T ss_pred cCE
Confidence 774
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.14 Score=55.67 Aligned_cols=242 Identities=15% Similarity=0.140 Sum_probs=153.2
Q ss_pred ceeEEEEeCCC-eE-EEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 86 WVNDAVLVGDN-TL-VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 86 ~V~~v~~s~d~-~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
....+.+.+++ .+ ++-.....+.+-+.. ..........-......+++++...+..+....++.|.+.|..+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 44556777775 32 222222255555532 1211111111113445777774445566666667889999965421110
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC---CCe
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT---EKV 240 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~---dg~ 240 (764)
....+ .....++++++++.+..+.. ++.
T Consensus 111 -----------------------------------------------~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~ 141 (381)
T COG3391 111 -----------------------------------------------SIPVG--LGPVGLAVDPDGKYVYVANAGNGNNT 141 (381)
T ss_pred -----------------------------------------------Eeeec--cCCceEEECCCCCEEEEEecccCCce
Confidence 00111 14568899999987777655 689
Q ss_pred EEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeeE-E----EeeecCceEEEEEcCCCC
Q 046871 241 VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRLWDLGQQRCIH-S----YAVHTDSVWALASTPTFS 314 (764)
Q Consensus 241 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwdl~~~~~~~-~----l~~h~~~V~~l~~spd~~ 314 (764)
+.+.|..+++.+.....-..+ ..++++|+|+.++.+. .++.|.+.|.......+ . .. -...-..+.++|++.
T Consensus 142 vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~ 219 (381)
T COG3391 142 VSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGN 219 (381)
T ss_pred EEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCC
Confidence 999999999888875543345 8899999999766655 78899999976655443 1 11 122346789999999
Q ss_pred EEEEecCC---CcEEEEeCCCCeEEEE-eecCC-CeEEEEeeCCc--eEEEeC-CCcEEEeeCCCCCCceeee
Q 046871 315 HVYSGGRD---LSLYLTDLATRESLLL-CTGEH-PILQLALHDDN--IWVATT-DSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 315 ~l~sgs~D---g~I~iwd~~~~~~~~~-~~~~~-~V~~l~~spd~--l~~~s~-dg~I~iwd~~~~~~~~~~~ 379 (764)
+++..... +.+.+.|..++..... ..... ....+.++|++ +++... .+.+.+.|..+......+.
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 77755443 5899999998877665 22222 46678899999 555533 4788888887766555544
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.48 E-value=0.032 Score=56.02 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=111.1
Q ss_pred eecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCCeeeeecccc-CCceEEEEEecCCCcEEEEEeCCCeEEEEe
Q 046871 79 TFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDGTCIRTLRQH-SDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155 (764)
Q Consensus 79 ~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h-~~~V~~l~~~p~~~~~lasg~~dg~I~iwd 155 (764)
.+.+-...+..++|.|+ + .+++....+.|...+. .++.++.+.-. .+..-.|++. .++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEE
Confidence 34455556999999997 5 4555566677777774 57777765433 3567889998 6677777666789999999
Q ss_pred CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE
Q 046871 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235 (764)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 235 (764)
+......... ... ..........++..+-.++|++.++.|+.+
T Consensus 93 ~~~~~~~~~~---------------------~~~----------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~ 135 (248)
T PF06977_consen 93 IDDDTTSLDR---------------------ADV----------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVA 135 (248)
T ss_dssp E----TT--E---------------------EEE----------------EEEE---S---SS--EEEEEETTTTEEEEE
T ss_pred Eeccccccch---------------------hhc----------------eEEecccccCCCcceEEEEEcCCCCEEEEE
Confidence 8542111000 000 000000112345668999999988888888
Q ss_pred eCCCeEEEEeCCC---CceeE--Ee------ccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeeEEEeeec--
Q 046871 236 GTEKVVRVWDPRT---GSKTI--KL------RGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-- 301 (764)
Q Consensus 236 s~dg~I~iwd~~~---~~~~~--~l------~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-- 301 (764)
-...-..+|.++. ...+. .. ......+.+++++|.. .+++....+..|..+| .+|+.+..+.-..
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~ 214 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF 214 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG
T ss_pred eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc
Confidence 7776666666543 11111 11 1233467899999964 5566666778899999 5787777665332
Q ss_pred -------CceEEEEEcCCCCEEEEecCCCcEEEE
Q 046871 302 -------DSVWALASTPTFSHVYSGGRDLSLYLT 328 (764)
Q Consensus 302 -------~~V~~l~~spd~~~l~sgs~Dg~I~iw 328 (764)
...-.|+|.++|++. ..+.-+..+++
T Consensus 215 ~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 215 HGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp GG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred cCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 246789999998644 44455555544
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.47 E-value=0.13 Score=53.17 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=94.5
Q ss_pred CEEEEEeCCCeEEEEeCC-CCceeEE----eccCCcCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--eEEEeee-
Q 046871 230 NLLVSGGTEKVVRVWDPR-TGSKTIK----LRGHTDNI-RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC--IHSYAVH- 300 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~-~~~~~~~----l~~h~~~V-~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~--~~~l~~h- 300 (764)
+-+.+-|.||.+.-..+. .|+...+ |..-.+++ ..-.+...+..++--+.+|.|+--|+..... ...+..-
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 457788888888887776 4554322 11112222 2333444555555577899999888865432 2222211
Q ss_pred ---------cCceEEEEEcCCCCEEEEecC---CC-------cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc---eEEE
Q 046871 301 ---------TDSVWALASTPTFSHVYSGGR---DL-------SLYLTDLATRESLLLCTGEHPILQLALHDDN---IWVA 358 (764)
Q Consensus 301 ---------~~~V~~l~~spd~~~l~sgs~---Dg-------~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~---l~~~ 358 (764)
.+.-.-+++++..+.|+..-. ++ .|.++|+.+++.+..+....++.+|.++.+. |++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence 122345778876666664322 21 5889999999999999988889999999988 5444
Q ss_pred e-CCCcEEEeeCCCCCCceeeec
Q 046871 359 T-TDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 359 s-~dg~I~iwd~~~~~~~~~~~~ 380 (764)
+ .++.+.+||..+++.++.+..
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCeEEEEeCcCCcEEeehhc
Confidence 4 478999999999998888763
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0062 Score=67.97 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=63.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 35679999988889999899999999988877766777899999999999999999999999999999875
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.36 E-value=0.04 Score=61.49 Aligned_cols=196 Identities=9% Similarity=-0.046 Sum_probs=118.4
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceeEEec---------------cCCcCeE-----EEEEcCCCCEEEEEe-CCCcEEE
Q 046871 228 SGNLLVSGGT-EKVVRVWDPRTGSKTIKLR---------------GHTDNIR-----SLLLDSTGRYCLSGS-SDSMIRL 285 (764)
Q Consensus 228 ~g~~l~sgs~-dg~I~iwd~~~~~~~~~l~---------------~h~~~V~-----~l~~spdg~~l~sgs-~Dg~I~i 285 (764)
||++|+.-.. +..|-..+++..++-..+. .++..|. .+=+++||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6788887654 5566666666554322221 1111221 123455676553332 3456778
Q ss_pred EeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec----------------------------------------CCCcE
Q 046871 286 WDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG----------------------------------------RDLSL 325 (764)
Q Consensus 286 wdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs----------------------------------------~Dg~I 325 (764)
.|..+.+...++.... ....++++|+++++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 8888777766655322 345667888888877664 12457
Q ss_pred EEEeCCC-----CeEEEEeecCCCeEEEEeeCCc--eEEE-eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccc
Q 046871 326 YLTDLAT-----RESLLLCTGEHPILQLALHDDN--IWVA-TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVS 397 (764)
Q Consensus 326 ~iwd~~~-----~~~~~~~~~~~~V~~l~~spd~--l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 397 (764)
.+.|..+ ...+..+........+.++||+ ++++ ..+.+|.|.|+...+.. +... +.+
T Consensus 299 ~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~--~~~~-------~~~------ 363 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL--FDGK-------IKP------ 363 (635)
T ss_pred EEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh--hhcc-------CCc------
Confidence 7888777 4566667777788899999999 4444 44889999999765421 1100 000
Q ss_pred cCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 398 LEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
...-...++=..+....+|.++|....|-.-|..|..||+.+
T Consensus 364 ----------~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 ----------RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ----------cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 000000011133445678888998888889999999999986
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.02 Score=62.51 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=102.1
Q ss_pred CccceeccCCCCcEEEEEEcCCCCEEEEE---eCC-CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEE-EeCCC
Q 046871 207 GYVPIAAKGHKESVYALAMNDSGNLLVSG---GTE-KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS-GSSDS 281 (764)
Q Consensus 207 ~~~~~~~~~~~~~V~~l~~sp~g~~l~sg---s~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s-gs~Dg 281 (764)
+.....+......+..-+|+|++..++.- ... ..+.++|+.+++....+. ..+.-..-.|+|||++|+. ...||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 33444445556667778899988876543 222 469999999887655544 3344456789999998764 44566
Q ss_pred c--EEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEE-EecCCC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--
Q 046871 282 M--IRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVY-SGGRDL--SLYLTDLATRESLLLCTGEHPILQLALHDDN-- 354 (764)
Q Consensus 282 ~--I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-- 354 (764)
. |.+.|+..+. +..+..-.+.-+.=.|+|||+.++ +.++.| .|.+.+...+...........-..-.|+|||
T Consensus 261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCE
Confidence 5 6667876665 333543333334567899999987 445555 4666777776654444433333377899999
Q ss_pred eEEEeC-CCc--EEEeeCCCCC
Q 046871 355 IWVATT-DSS--VHRWPAEGRN 373 (764)
Q Consensus 355 l~~~s~-dg~--I~iwd~~~~~ 373 (764)
++..+. +|. |.+.++.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeccCCceeeEEeccCCCC
Confidence 444443 344 5555554443
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.061 Score=58.38 Aligned_cols=201 Identities=16% Similarity=0.179 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeeE
Q 046871 220 VYALAMNDSGNL-LVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS---DSMIRLWDLGQQRCIH 295 (764)
Q Consensus 220 V~~l~~sp~g~~-l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~---Dg~I~iwdl~~~~~~~ 295 (764)
-..+++++.+.. .+....+..|.+.|..+.+......--. ....++++++++.+..+.. ++++.+.|..+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 356778887774 4455556899999988777766654322 5678999999988877766 6889999999998888
Q ss_pred EEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCCCeEEE-----EeecCCCeEEEEeeCCc--eEEEeCC---CcE
Q 046871 296 SYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLATRESLL-----LCTGEHPILQLALHDDN--IWVATTD---SSV 364 (764)
Q Consensus 296 ~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~~~~~-----~~~~~~~V~~l~~spd~--l~~~s~d---g~I 364 (764)
+...-..+ ..++++|++..++... .++.|.+.|........ .......-..+.+++++ +++.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 85544344 8999999999777554 78899999977665553 12223345678888888 4444433 467
Q ss_pred EEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeC-CCcEE
Q 046871 365 HRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA-AGSVK 443 (764)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~-dG~V~ 443 (764)
.+.|..++....... ..... ......+.|+|+.+-+... .+.|.
T Consensus 234 ~~id~~~~~v~~~~~----------------------------------~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 234 LKIDTATGNVTATDL----------------------------------PVGSG-APRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred EEEeCCCceEEEecc----------------------------------ccccC-CCCceeECCCCCEEEEEecCCCeEE
Confidence 777776654332210 00011 2334567789988877644 48999
Q ss_pred EEEccccEEeeecC
Q 046871 444 LWEITRGVVVEDYG 457 (764)
Q Consensus 444 lWdi~tg~~i~~~~ 457 (764)
+-|..+.+....+.
T Consensus 279 vid~~~~~v~~~~~ 292 (381)
T COG3391 279 VIDGATDRVVKTGP 292 (381)
T ss_pred EEeCCCCceeeeec
Confidence 99999988887764
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0014 Score=71.17 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=79.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeE
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIR-SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~ 295 (764)
...|.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++.-|..+++ +++|.|||+.|+.|-.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568899999999999999999999999987 888999987777787 99999999999999999999999999988776
Q ss_pred EEe-eecCceEEEEEc
Q 046871 296 SYA-VHTDSVWALAST 310 (764)
Q Consensus 296 ~l~-~h~~~V~~l~~s 310 (764)
.+. .-...|.++.|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 632 133456677665
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.18 E-value=0.066 Score=56.77 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=90.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEec-cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-C
Q 046871 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS-KTIKLR-GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-Q 291 (764)
Q Consensus 215 ~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~ 291 (764)
...++|++++-. ++ .|+++. ++.|.+|++...+ ....-. .....+.++... +++++.|.....+.++..+. .
T Consensus 86 ~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 86 EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT
T ss_pred eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC
Confidence 447889999877 34 444443 4789999998777 333222 122355666555 66999999888888875433 3
Q ss_pred eeeEEEeee--cCceEEEEEcCCCCEEEEecCCCcEEEEeCCC-------Ce----EEEEeecCCCeEEE---EeeC---
Q 046871 292 RCIHSYAVH--TDSVWALASTPTFSHVYSGGRDLSLYLTDLAT-------RE----SLLLCTGEHPILQL---ALHD--- 352 (764)
Q Consensus 292 ~~~~~l~~h--~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~-------~~----~~~~~~~~~~V~~l---~~sp--- 352 (764)
+.+..+... ...++++.|-++++.++.++.+|.+.++.... +. ....+.....|+++ .+.|
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~ 240 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSG 240 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SS
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCC
Confidence 333333322 34578888876667999999999999988752 22 22344457778888 5444
Q ss_pred --C-----ceEEEeCCCcEEEe
Q 046871 353 --D-----NIWVATTDSSVHRW 367 (764)
Q Consensus 353 --d-----~l~~~s~dg~I~iw 367 (764)
+ .++.++.+|.|...
T Consensus 241 ~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 241 SSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-TTEEEEEEEEETTS-EEEE
T ss_pred CCcccccceEEEEecCCEEEEE
Confidence 1 17888899998843
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.15 E-value=0.028 Score=47.95 Aligned_cols=100 Identities=22% Similarity=0.234 Sum_probs=71.5
Q ss_pred CeEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE
Q 046871 261 NIRSLLLDS---TG-RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 261 ~V~~l~~sp---dg-~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
.|++|++.. || +.|++||.|..||+|+- ...+..+. -++.|.+++-... ..|+.+-.+|+|-+|+- ...+
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 367777765 33 57999999999999974 46666666 3557888877666 56888888999999975 4445
Q ss_pred EEeecCCCeEEEEeeC---Cc---eEEEeCCCcEEE
Q 046871 337 LLCTGEHPILQLALHD---DN---IWVATTDSSVHR 366 (764)
Q Consensus 337 ~~~~~~~~V~~l~~sp---d~---l~~~s~dg~I~i 366 (764)
...+....+.++++.. || |++|-.+|.|-+
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5555566677776543 33 888888887743
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.17 Score=52.75 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=75.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC--C----ce-eEEeccCCcCeEEEEEcCCCCEEEEEeCCC-cE
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGGT-EKVVRVWDPRT--G----SK-TIKLRGHTDNIRSLLLDSTGRYCLSGSSDS-MI 283 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~~--~----~~-~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg-~I 283 (764)
...+-..-..|+||||++.|+.... .+.|.-|++.. + +. ...+....+..-.++...+|.+.+++-.+| .|
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 3444445578999999988777755 47788887652 2 11 222223445666788888998876555554 89
Q ss_pred EEEeCCCCeeeEEEeeecCceEEEEE-cCCCCEEEEec
Q 046871 284 RLWDLGQQRCIHSYAVHTDSVWALAS-TPTFSHVYSGG 320 (764)
Q Consensus 284 ~iwdl~~~~~~~~l~~h~~~V~~l~~-spd~~~l~sgs 320 (764)
.+|+.. ++.+..+......+++++| .|+.+.|+..+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 999997 9999999888788888988 56666665433
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.08 E-value=0.031 Score=47.66 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=70.7
Q ss_pred eeEEEeecccccCCC-cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCC
Q 046871 38 INCLAVLKSSVSNGV-DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 38 V~~l~~~~~~~S~d~-~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~ 116 (764)
|++|++.. |..|| +-|++|+.|..||+|+-+. .+..+.. .+.|++++-...++++.+..+|+|-+|+- ..
T Consensus 2 V~al~~~d--~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFD--FDGDGENELLVGSDDFEIRVFKGDE----IVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEe--cCCCCcceEEEecCCcEEEEEeCCc----EEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cc
Confidence 77888743 23332 5899999999999998654 3444433 56688888888789999999999999983 23
Q ss_pred eeeeeccccCCceEEEEEecCC---CcEEEEEeCCCeEE
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKN---SNIVASGGLGAEVF 152 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~---~~~lasg~~dg~I~ 152 (764)
+.-+.-. ...+.++++...+ ..-|++|-.+|.|-
T Consensus 73 RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333222 2336777776322 23688888888764
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.01 E-value=0.0022 Score=42.62 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=35.0
Q ss_pred CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEe
Q 046871 291 QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTD 329 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd 329 (764)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.03 Score=61.18 Aligned_cols=178 Identities=15% Similarity=0.094 Sum_probs=101.6
Q ss_pred ccCCCcEEEEE---eCC-CcEEEEeCCCCCCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeee
Q 046871 48 VSNGVDYLFTG---SRD-GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRT 121 (764)
Q Consensus 48 ~S~d~~~L~sg---s~D-g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~ 121 (764)
|+|+++.++-- ... ..+.++|++++....+..+.++.. .-.|+||| .+++...||...||-++..++....
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 57888866543 222 469999999977766777666654 35799997 4556667776554433223333333
Q ss_pred ccccCCceEEEEEecCCCcE-EEEEeCCCe--EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcc
Q 046871 122 LRQHSDYVTCLAAAEKNSNI-VASGGLGAE--VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSI 198 (764)
Q Consensus 122 l~~h~~~V~~l~~~p~~~~~-lasg~~dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 198 (764)
+....+.-..=.|+ +++.. +++.+..|. |.++|++....
T Consensus 277 Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~------------------------------------- 318 (425)
T COG0823 277 LTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQV------------------------------------- 318 (425)
T ss_pred cccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCce-------------------------------------
Confidence 44333333355677 45554 455555664 44445543211
Q ss_pred cccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC-Ce--EEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE
Q 046871 199 SAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE-KV--VRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275 (764)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d-g~--I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 275 (764)
..+....+.-..-.|+|||++|+..+.. |. |.+.|+.++.....+. +......-.+.++++.++
T Consensus 319 ------------~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 319 ------------TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred ------------eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 0011111111156789999998877643 43 6777777666444443 344445567788888766
Q ss_pred EEeC
Q 046871 276 SGSS 279 (764)
Q Consensus 276 sgs~ 279 (764)
..+.
T Consensus 386 ~~s~ 389 (425)
T COG0823 386 FSSG 389 (425)
T ss_pred Eecc
Confidence 5543
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0039 Score=67.73 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=80.6
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceE-EEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVW-ALASTPTFSHVYSGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~-~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~ 337 (764)
...+.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.|+.|=.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999987 778888887887777 99999999999999999999999999998877
Q ss_pred E--eecCCCeEEEEeeCC
Q 046871 338 L--CTGEHPILQLALHDD 353 (764)
Q Consensus 338 ~--~~~~~~V~~l~~spd 353 (764)
. +.....|.++-|.+.
T Consensus 99 ~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDRI 116 (665)
T ss_pred ccccccccchheeecccc
Confidence 6 444667777777643
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.32 Score=50.71 Aligned_cols=138 Identities=10% Similarity=0.034 Sum_probs=88.1
Q ss_pred EEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC-CcEEEEeC
Q 046871 221 YALAMNDSGNLLVSGGT-----------EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD-SMIRLWDL 288 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~-----------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-g~I~iwdl 288 (764)
..+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+... +.|.-|++
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 34455566664443222 134555555 466666666656667889999999888777654 77888877
Q ss_pred CC--C----e-eeEEEeeecCceEEEEEcCCCCEEEEecCCC-cEEEEeCCCCeEEEEeecC-CCeEEEEeeCCc---eE
Q 046871 289 GQ--Q----R-CIHSYAVHTDSVWALASTPTFSHVYSGGRDL-SLYLTDLATRESLLLCTGE-HPILQLALHDDN---IW 356 (764)
Q Consensus 289 ~~--~----~-~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~-~~V~~l~~spd~---l~ 356 (764)
.. + + ....+..+.+..-.++...+|.+.+++-.+| .|.+|+.. ++.+..+... ..+++++|-... |+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEE
Confidence 52 1 1 1122223345566777888888776555554 89999998 8888877765 678888886532 54
Q ss_pred EEeC
Q 046871 357 VATT 360 (764)
Q Consensus 357 ~~s~ 360 (764)
+.+.
T Consensus 272 iTs~ 275 (307)
T COG3386 272 ITSA 275 (307)
T ss_pred EEec
Confidence 4443
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.87 E-value=0.0028 Score=42.15 Aligned_cols=39 Identities=38% Similarity=0.726 Sum_probs=34.2
Q ss_pred CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 046871 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 249 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 287 (764)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.83 E-value=0.2 Score=53.15 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=108.9
Q ss_pred CeEEEEeCCCCceeEEeccCC-cCeEE---EEEcCC----CCEEEEEeC----------CCcEEEEeCCCC----eeeEE
Q 046871 239 KVVRVWDPRTGSKTIKLRGHT-DNIRS---LLLDST----GRYCLSGSS----------DSMIRLWDLGQQ----RCIHS 296 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~~h~-~~V~~---l~~spd----g~~l~sgs~----------Dg~I~iwdl~~~----~~~~~ 296 (764)
+.|++.|..+.+.+..+.-.. ..+.+ +.+..+ ..+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899988888776554222 23343 334432 467777653 288999999874 22222
Q ss_pred E--eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-EEEEee--cCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 297 Y--AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCT--GEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 297 l--~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~--~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
+ ....++|++++-- ++.++++. ++.|++|++...+ ...... ....+.++....+.+++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2 2357889999876 44444433 4789999998777 444333 3457888888888899999988888885543
Q ss_pred CC-CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 372 RN-PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 372 ~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
.. ....+... + ....++++.+..|+..++.++.+|.|.++...
T Consensus 159 ~~~~l~~va~d---------~-------------------------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNKLILVARD---------Y-------------------------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE-EEEEEEE---------S-------------------------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCCEEEEEEec---------C-------------------------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 11 11111110 0 02236788888666799999999999999875
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.79 E-value=0.025 Score=65.41 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=98.3
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCeeeEEEeeecCc-eEEEEEcC-----CCCEEEEecCCCcEEEEeCCCCe--EEE---
Q 046871 270 TGRYCLSG-SSDSMIRLWDLGQQRCIHSYAVHTDS-VWALASTP-----TFSHVYSGGRDLSLYLTDLATRE--SLL--- 337 (764)
Q Consensus 270 dg~~l~sg-s~Dg~I~iwdl~~~~~~~~l~~h~~~-V~~l~~sp-----d~~~l~sgs~Dg~I~iwd~~~~~--~~~--- 337 (764)
+.++|+.- .....|+-.|+..|+.+..+..|... |..++-.. .....+.|-.+..++.||.+-.. .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44454443 34678999999999999999988754 55554321 12345677778899999988532 221
Q ss_pred -EeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccc
Q 046871 338 -LCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTI 415 (764)
Q Consensus 338 -~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i 415 (764)
.+.......|++-+.+| |++|+.+|.||+||-...+ ....+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-------------------------------------AKT~l 614 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-------------------------------------AKTAL 614 (794)
T ss_pred cccccCCCceEEEecCCceEEEEeCCCcEEeecccchh-------------------------------------hhhcC
Confidence 22235568899999999 9999999999999832211 01123
Q ss_pred cC-CCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 416 PG-IPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 416 ~g-~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
+| +.+|+.+.++.||+||+... +..+.|++..
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 33 56799999999999988666 4467788764
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.78 E-value=0.077 Score=60.56 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=88.8
Q ss_pred CcEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC---------
Q 046871 218 ESVYALAMNDSGNLLVSGG------TEK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD--------- 280 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs------~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D--------- 280 (764)
..+.+.+++|+|+.++..- .|. .|.+++. .+.......+ ...+.-.|+|||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577889999999887655 233 5666665 2332222232 237788999999887776532
Q ss_pred ---CcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEE---EeCCCCeEEE-----Eee-cCCCeEEE
Q 046871 281 ---SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYL---TDLATRESLL-----LCT-GEHPILQL 348 (764)
Q Consensus 281 ---g~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~i---wd~~~~~~~~-----~~~-~~~~V~~l 348 (764)
+.+.+.++..+.... ...+.|..+.|+|||..++... +|.|++ -....|.... ... ....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443333222 2345799999999999988655 477877 4444554111 111 23346889
Q ss_pred EeeCCc-eEEEeCCCcEEEeeC
Q 046871 349 ALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 349 ~~spd~-l~~~s~dg~I~iwd~ 369 (764)
.|.+++ |+++..++...+|.+
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred eEecCCEEEEEecCCCCceEEE
Confidence 999999 777776555445543
No 370
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.004 Score=59.55 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=87.5
Q ss_pred eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
.+..-+.|+.|.-+++.......+.-..|. +..-.+.-+..++.|+.+|.|.+|..+......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~------------- 94 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS------------- 94 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhh----cceeecccCceEEeecccceEEEecCCccchHH-------------
Confidence 355667788888877632221122222222 221122446788999999999999887310000
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESV-YALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V-~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
.....-...| ..+....++.+..+++.+|.||.|++.-++.+...
T Consensus 95 ----------------------------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 95 ----------------------------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred ----------------------------------HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 0001111122 22333345668889999999999999988888877
Q ss_pred ccCC-cCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 046871 256 RGHT-DNIRSLLLDSTGRYCLSG--SSDSMIRLWDLGQ 290 (764)
Q Consensus 256 ~~h~-~~V~~l~~spdg~~l~sg--s~Dg~I~iwdl~~ 290 (764)
-.|. .++..+..+..++++..+ |.|..++.|++..
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 7777 566666666666677766 7777777777753
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.64 E-value=0.27 Score=53.17 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=63.5
Q ss_pred eccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEE-EEEcCC-----------------CC-
Q 046871 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS-LLLDST-----------------GR- 272 (764)
Q Consensus 212 ~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spd-----------------g~- 272 (764)
.+......+.+++.+|++++.++...=|.|.++|+.++..++.++|-.+.=-. +..... ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34556677899999999999999888899999999999988888876552111 111111 01
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEEee
Q 046871 273 YCLSGSSDSMIRLWDLGQQRCIHSYAV 299 (764)
Q Consensus 273 ~l~sgs~Dg~I~iwdl~~~~~~~~l~~ 299 (764)
+++-+-.-|.|.||++++|..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 233456688999999999888877764
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.64 E-value=0.15 Score=58.13 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=81.5
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEE--
Q 046871 220 VYALAMNDSGNLLVSGGTE------------KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRL-- 285 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~d------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~i-- 285 (764)
...-.|+|+|+.|++.... +.+.+.+++.+.... .....|..+.|||||.+++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 5667788888777666432 233333444333222 2345799999999999988765 577776
Q ss_pred -EeCCCCe-ee---EEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEe--CCCCeEEEEeec---CCCeEEEEeeCCc
Q 046871 286 -WDLGQQR-CI---HSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTD--LATRESLLLCTG---EHPILQLALHDDN 354 (764)
Q Consensus 286 -wdl~~~~-~~---~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd--~~~~~~~~~~~~---~~~V~~l~~spd~ 354 (764)
-....|. .+ ..+.. -.+.+.++.|..++.++ .+..++...+|. +...... .+.. ..++..++-++..
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~~ 552 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPST 552 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCce
Confidence 4434443 11 11222 22346889999988855 444444444454 4432222 2222 4567788877766
Q ss_pred eEEEeCCCcEE
Q 046871 355 IWVATTDSSVH 365 (764)
Q Consensus 355 l~~~s~dg~I~ 365 (764)
+++...++.+.
T Consensus 553 iyv~~~~g~~~ 563 (591)
T PRK13616 553 VYVTDARAVLQ 563 (591)
T ss_pred EEEEcCCceEE
Confidence 77777776443
No 373
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.57 E-value=0.17 Score=57.66 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=117.3
Q ss_pred CCcEEEEEeCCC------cEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCC-C-----cEEEecCCCCCe-
Q 046871 51 GVDYLFTGSRDG------TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSD-T-----TLKTWNCSSDGT- 117 (764)
Q Consensus 51 d~~~L~sgs~Dg------~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~D-g-----~V~vWd~~~~~~- 117 (764)
.+.+++.||.++ .+..+|..++.......+.. ...-.+++..++..+++|+.| | ++..||...+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 355667777663 57788888764444444442 223445666666678888888 2 466777643221
Q ss_pred eeeeccccCCceEEEEEecCCCcEEEEEeCCCe-----EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 118 CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE-----VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 118 ~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~-----I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
.+..+....... .++. -++.+.|+||.||. |-.||..+..-.
T Consensus 363 ~~a~M~~~R~~~-~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~------------------------------ 409 (571)
T KOG4441|consen 363 PVAPMNTKRSDF-GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT------------------------------ 409 (571)
T ss_pred ccCCccCccccc-eeEE--ECCEEEEEeccccccccccEEEecCCCCccc------------------------------
Confidence 112222222222 2222 35889999999864 555665542100
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEeCCCCceeE--EeccCCcCeEE
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK------VVRVWDPRTGSKTI--KLRGHTDNIRS 264 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg------~I~iwd~~~~~~~~--~l~~h~~~V~~ 264 (764)
....+.......-.+.+ +|.+.++||.++ .+..||..+++-.. .+..-......
T Consensus 410 ----------------~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~ 471 (571)
T KOG4441|consen 410 ----------------PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV 471 (571)
T ss_pred ----------------ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceE
Confidence 00001111112222222 477788887554 57889988764322 22211112222
Q ss_pred EEEcCCCCEEEEEeCCCc-----EEEEeCCCCee--eEEEeeecCceEEEEEcCCCCEEEEecCCC-----cEEEEeCCC
Q 046871 265 LLLDSTGRYCLSGSSDSM-----IRLWDLGQQRC--IHSYAVHTDSVWALASTPTFSHVYSGGRDL-----SLYLTDLAT 332 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~-----I~iwdl~~~~~--~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg-----~I~iwd~~~ 332 (764)
.. -++...+.|+.|+. |..||..+.+- +..+......+..... ++...+.|+.|| +|..||..+
T Consensus 472 a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 472 AV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 22 24777788887763 67788765443 2222222222222222 456667777765 355565544
Q ss_pred C
Q 046871 333 R 333 (764)
Q Consensus 333 ~ 333 (764)
.
T Consensus 548 d 548 (571)
T KOG4441|consen 548 D 548 (571)
T ss_pred C
Confidence 3
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.55 E-value=0.042 Score=63.64 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=98.0
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCceeEEeccCCcC-eEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCe-eeEEEee-
Q 046871 229 GNLLVSG-GTEKVVRVWDPRTGSKTIKLRGHTDN-IRSLLLDS-----TGRYCLSGSSDSMIRLWDLGQQR-CIHSYAV- 299 (764)
Q Consensus 229 g~~l~sg-s~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~sp-----dg~~l~sgs~Dg~I~iwdl~~~~-~~~~l~~- 299 (764)
.++|+.- .....|+-.|+..|+.+..+..|.+. |..++-.. +....+.|-.+..+..||.+-.. .+..-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 34678999999999999999887764 65554321 13345677788999999998532 2211111
Q ss_pred ---ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCC
Q 046871 300 ---HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAE 370 (764)
Q Consensus 300 ---h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~ 370 (764)
......|++-+.+| +||.|+.+|.||+||--.......++ ...||.+|..+.|| -++|+.+..+.+++..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 23457788777665 79999999999999943322223333 37899999999999 7778888888888864
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.55 E-value=2.4 Score=49.46 Aligned_cols=319 Identities=12% Similarity=0.101 Sum_probs=164.7
Q ss_pred cCCCcEEEEEeCCCcEEEEeCC-CCCCc----cceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCC---e---
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLA-DDVGS----CSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDG---T--- 117 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~-~~~~~----~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~---~--- 117 (764)
+.++.+.+.|..+|.+...-+. +++.. .....-+..+-..|+.+.++|.+++||.-|.=++-.+.... .
T Consensus 266 ~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ 345 (1096)
T KOG1897|consen 266 DLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVV 345 (1096)
T ss_pred cCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhh
Confidence 5677888888889988766554 32111 11222355666778888899999999987765655542211 1
Q ss_pred eeeeccccCCceEEEEEecC---CCcEEEEEe---CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 118 CIRTLRQHSDYVTCLAAAEK---NSNIVASGG---LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 118 ~~~~l~~h~~~V~~l~~~p~---~~~~lasg~---~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
.+.++. .-++|..++.... ....+++++ .||.+++..-.-+. ..+
T Consensus 346 ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I--------------------------~e~-- 396 (1096)
T KOG1897|consen 346 ILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI--------------------------DEL-- 396 (1096)
T ss_pred hhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc--------------------------cee--
Confidence 112222 3357888877632 234566654 47888887543210 000
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEE--EcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEE
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALA--MND--SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~--~sp--~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 267 (764)
....+.+ -..++.+. +.+ +. +|+.+-.+- -++..+...-......+.......+..
T Consensus 397 -----------------A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~ 456 (1096)
T KOG1897|consen 397 -----------------ASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFC 456 (1096)
T ss_pred -----------------eEeecCC-ccceeEeeccccccCCc-EEEEEeccc-eEEEEEccceEEeccccccccCceEEE
Confidence 0011222 23344554 322 22 444443322 233333221111122233334444444
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee--cCCC
Q 046871 268 DS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT--GEHP 344 (764)
Q Consensus 268 sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~ 344 (764)
|. .|+.|+=.. ...||+++-. ..+..+.. .+.++....+.+...++.++.++.+...++..+......+ .+..
T Consensus 457 S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~e 532 (1096)
T KOG1897|consen 457 STINGNQLVQVT-SNSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYE 532 (1096)
T ss_pred EccCCceEEEEe-cccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecce
Confidence 43 344444333 3457777653 22333332 2333444444455577777778888888887666333332 3678
Q ss_pred eEEEEeeCCc--------eEEEeCCCcEEEeeC-CCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccc
Q 046871 345 ILQLALHDDN--------IWVATTDSSVHRWPA-EGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTI 415 (764)
Q Consensus 345 V~~l~~spd~--------l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i 415 (764)
|.|+.++|-+ +++|..+..+.+.-. .....+..... .+. .+
T Consensus 533 vaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l------------------~~~------------~i 582 (1096)
T KOG1897|consen 533 VACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL------------------SGE------------II 582 (1096)
T ss_pred eEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc------------------CCC------------cc
Confidence 9999998763 677766655443322 11111110000 000 00
Q ss_pred cCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc--ccEE
Q 046871 416 PGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT--RGVV 452 (764)
Q Consensus 416 ~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~--tg~~ 452 (764)
...|.-..+-.|+.+|+++..||.+.-+.+. +|++
T Consensus 583 --PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 583 --PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred --chheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 1224455565678999999999998776554 4443
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.33 Score=48.22 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=96.1
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeC------------------
Q 046871 224 AMNDSGNLLVSGGT-----EKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSS------------------ 279 (764)
Q Consensus 224 ~~sp~g~~l~sgs~-----dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~------------------ 279 (764)
.|+|||.+|...-. .|.|-|||.+.+ +.+.++..|.-.-..+.+.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 48999999987643 368999999865 567788888888889999999999887642
Q ss_pred CCcEEEEeCCCCeeeEEE--e--eecCceEEEEEcCCCCEEEEecCCC-----cEEEEeCCCCeEEEEeec--------C
Q 046871 280 DSMIRLWDLGQQRCIHSY--A--VHTDSVWALASTPTFSHVYSGGRDL-----SLYLTDLATRESLLLCTG--------E 342 (764)
Q Consensus 280 Dg~I~iwdl~~~~~~~~l--~--~h~~~V~~l~~spd~~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~--------~ 342 (764)
.-.+.+.|..+|..+... . .+.-+|..++..+||..++.+-..| --.+=-...++.+..+.. .
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 112333443444443322 1 2445678888888887666543322 111222234444443332 2
Q ss_pred CCeEEEEeeCCc-eE--EEeCCCcEEEeeCCCCCCce
Q 046871 343 HPILQLALHDDN-IW--VATTDSSVHRWPAEGRNPQK 376 (764)
Q Consensus 343 ~~V~~l~~spd~-l~--~~s~dg~I~iwd~~~~~~~~ 376 (764)
.-|-+++.+.+. ++ ++-..+...+||..++..+.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 346778887554 33 33346678899999987553
No 377
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.50 E-value=0.53 Score=55.34 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=76.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcC--------eEEEEEc----------------CCCCEEEEEeCCCcEE
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN--------IRSLLLD----------------STGRYCLSGSSDSMIR 284 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------pdg~~l~sgs~Dg~I~ 284 (764)
+..++.++.++.|.-.|.++|+.+.++...... .+.+++- .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888999999999999998887643211 1223332 1345888899999999
Q ss_pred EEeCCCCeeeEEEeeecCce-------------EEEEEcC--CCCEEEEecC----------CCcEEEEeCCCCeEEEEe
Q 046871 285 LWDLGQQRCIHSYAVHTDSV-------------WALASTP--TFSHVYSGGR----------DLSLYLTDLATRESLLLC 339 (764)
Q Consensus 285 iwdl~~~~~~~~l~~h~~~V-------------~~l~~sp--d~~~l~sgs~----------Dg~I~iwd~~~~~~~~~~ 339 (764)
-.|.++|+.+..+.. .+.| ..+...| .+..++.|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 1111 1112222 1335555542 688999999999998876
Q ss_pred ec
Q 046871 340 TG 341 (764)
Q Consensus 340 ~~ 341 (764)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.39 E-value=0.58 Score=49.51 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=84.5
Q ss_pred EEcCCCCEEEEEeC-C--CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee
Q 046871 224 AMNDSGNLLVSGGT-E--KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH 300 (764)
Q Consensus 224 ~~sp~g~~l~sgs~-d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h 300 (764)
+|.++|+.|+.++. | ..+.+.|+.+++..+--.+.........++++++.++-......|+-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46778877666554 4 46778899888755543332233335677898888876666678999999998877677766
Q ss_pred cCceEEEEE--cCCCCEEEEec---C-------------------CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--
Q 046871 301 TDSVWALAS--TPTFSHVYSGG---R-------------------DLSLYLTDLATRESLLLCTGEHPILQLALHDDN-- 354 (764)
Q Consensus 301 ~~~V~~l~~--spd~~~l~sgs---~-------------------Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-- 354 (764)
.+.+-...| +.++..++-.- . ...|.--|+.+|+...++.....+..+.|+|..
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 666655555 34566554221 1 234677788999988888888899999999987
Q ss_pred eEEEeCC----C-cEEEeeCC
Q 046871 355 IWVATTD----S-SVHRWPAE 370 (764)
Q Consensus 355 l~~~s~d----g-~I~iwd~~ 370 (764)
+++-|-. . .-|||-++
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEE
T ss_pred EEEEeccCCcceeceEEEEEE
Confidence 4444332 2 13666554
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.38 E-value=1 Score=45.24 Aligned_cols=194 Identities=11% Similarity=-0.014 Sum_probs=118.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeeEEEeeecC-ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE
Q 046871 261 NIRSLLLDSTGRYCLSGSSDS--MIRLWDLGQQRCIHSYAVHTD-SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg--~I~iwdl~~~~~~~~l~~h~~-~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~ 337 (764)
-...+.|..+|.++-+.+.-| .|+.+|+.+++.......... ---.++...| +...-.=.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 345678877888878877766 699999999987766542221 1122333322 223333457899999999999988
Q ss_pred EeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccC
Q 046871 338 LCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPG 417 (764)
Q Consensus 338 ~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g 417 (764)
.+.....=+.++...+.|+.......|+.+|..+.+..+.+........
T Consensus 125 ~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p------------------------------- 173 (264)
T PF05096_consen 125 TFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP------------------------------- 173 (264)
T ss_dssp EEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-------------------------------
T ss_pred EEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEE-------------------------------
Confidence 8887666777875555588888889999999988776666542110000
Q ss_pred CCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhhh------cccccccceEEeeCceeEEEE
Q 046871 418 IPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEELF------EMVSIPAWFTVDTRLGSLSVH 490 (764)
Q Consensus 418 ~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~~------~~~~~~~w~~vd~~~g~l~v~ 490 (764)
...+..+.+- +|...|=.=....|...|..+|+++..+ +++...++.. ....+.+.-..|.+++.+.|+
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~i---Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWI---DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEE---E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE---EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 1123444444 6666665556668999999999999887 4444443321 113456666667777776665
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.30 E-value=2.3 Score=46.75 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=117.9
Q ss_pred cCCCcEEEEE-eCC----CcEEEEeCCCCCCccce-eecccccceeEEEEeCCC-eEEEEeCC-----------CcEEEe
Q 046871 49 SNGVDYLFTG-SRD----GTLKRWSLADDVGSCSA-TFESHVDWVNDAVLVGDN-TLVSCSSD-----------TTLKTW 110 (764)
Q Consensus 49 S~d~~~L~sg-s~D----g~I~iWd~~~~~~~~~~-~l~~h~~~V~~v~~s~d~-~l~s~s~D-----------g~V~vW 110 (764)
||++++||-+ +.. ..|++.|++++ +.+. .+.. .....+.|.+++ .|+....+ ..|+.|
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 8999988865 333 44999999984 3322 1221 112238999995 44433322 237888
Q ss_pred cCCCCCee-eeeccccCCc--eEEEEEecCCCcEEEEEeC-C---CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 111 NCSSDGTC-IRTLRQHSDY--VTCLAAAEKNSNIVASGGL-G---AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 111 d~~~~~~~-~~~l~~h~~~--V~~l~~~p~~~~~lasg~~-d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
++...... ...+...... ...+..+ .++++++.... . ..+.+.|+.......
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-------------------- 266 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD-------------------- 266 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--------------------
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc--------------------
Confidence 87433222 2333333332 4567777 67777654332 2 346777776521000
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCce---eEEecc
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG---GTEKVVRVWDPRTGSK---TIKLRG 257 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg---s~dg~I~iwd~~~~~~---~~~l~~ 257 (764)
...........+..+.+... .+.+++.. ..++.|...++..... ...+..
T Consensus 267 -----------------------~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 267 -----------------------AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp ------------------------SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred -----------------------CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 00111112222333334333 33333333 2346777778877653 224555
Q ss_pred CCcC--eEEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCeeeEEEee-ecCceEEEEEcCCCCEEE-Eec---CCCcEEE
Q 046871 258 HTDN--IRSLLLDSTGRYCLS-GSSDS--MIRLWDLGQQRCIHSYAV-HTDSVWALASTPTFSHVY-SGG---RDLSLYL 327 (764)
Q Consensus 258 h~~~--V~~l~~spdg~~l~s-gs~Dg--~I~iwdl~~~~~~~~l~~-h~~~V~~l~~spd~~~l~-sgs---~Dg~I~i 327 (764)
+... +..+.. .+.+|+. ...++ .|+++++..+.....+.. -.+.|..+...++++.+. +.+ .-++++.
T Consensus 323 ~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 323 EDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYR 400 (414)
T ss_dssp -SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred CCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 6553 444444 3555554 44444 488999983444444432 334456665555555443 222 2367888
Q ss_pred EeCCCCeEEE
Q 046871 328 TDLATRESLL 337 (764)
Q Consensus 328 wd~~~~~~~~ 337 (764)
||+.+++...
T Consensus 401 ~d~~t~~~~~ 410 (414)
T PF02897_consen 401 YDLATGELTL 410 (414)
T ss_dssp EETTTTCEEE
T ss_pred EECCCCCEEE
Confidence 8998887654
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.25 E-value=1.1 Score=48.66 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=56.7
Q ss_pred cCCCcEEEEEeCCCcEEE---EeCCC-C--CCccceeecc---cc--cceeEEEEeC-----------CC-eEEEEeCCC
Q 046871 49 SNGVDYLFTGSRDGTLKR---WSLAD-D--VGSCSATFES---HV--DWVNDAVLVG-----------DN-TLVSCSSDT 105 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~i---Wd~~~-~--~~~~~~~l~~---h~--~~V~~v~~s~-----------d~-~l~s~s~Dg 105 (764)
+|++++|+.+..+..+.+ |+... + .........+ +. ..|+++.+.| |. .++.|..+|
T Consensus 10 s~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG 89 (415)
T PF14655_consen 10 SPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTSSG 89 (415)
T ss_pred cCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEeccc
Confidence 799999999987766665 64422 1 1222222221 11 4677666543 22 688999999
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEe
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAA 135 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~ 135 (764)
.|++|.- .+..+..-.-|.++|..+.+.
T Consensus 90 ~vrfyte--~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 90 YVRFYTE--NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEEEec--cchHHHHHhcCccceEEEEec
Confidence 9999993 577776666789999999875
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.016 Score=66.85 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=76.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEE
Q 046871 229 GNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWAL 307 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l 307 (764)
+..++.|+..|.|...|.... .....-..-.++|++++|+.+|++++.|-.+|.|.+||+..++.++.+..|..+.+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 567899999999999987653 1112222345799999999999999999999999999999999999999888776655
Q ss_pred EE---cCCCCEEEEecCCCcE
Q 046871 308 AS---TPTFSHVYSGGRDLSL 325 (764)
Q Consensus 308 ~~---spd~~~l~sgs~Dg~I 325 (764)
-+ ..++..++++...|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCce
Confidence 44 4466678888888873
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.21 E-value=3.6 Score=48.01 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=99.4
Q ss_pred cEEEEEEcCC-CCEEEEEe----------CCCeEEEEeCCCCceeEEecc--CCcCeEEEEEcCCCCEEEEEeCCCcEEE
Q 046871 219 SVYALAMNDS-GNLLVSGG----------TEKVVRVWDPRTGSKTIKLRG--HTDNIRSLLLDSTGRYCLSGSSDSMIRL 285 (764)
Q Consensus 219 ~V~~l~~sp~-g~~l~sgs----------~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~sgs~Dg~I~i 285 (764)
+|.++.|..| +.++++|. ..|.|.++....+..+..... -.+.+.++..- +|+++|. -...|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEE
Confidence 3445557766 67777775 257788887766433333322 23445554432 4665554 4678999
Q ss_pred EeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC--CCeEEEEee--cCCCeEEEEeeCCc-eEEEeC
Q 046871 286 WDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA--TRESLLLCT--GEHPILQLALHDDN-IWVATT 360 (764)
Q Consensus 286 wdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~--~~~~~~~~~--~~~~V~~l~~spd~-l~~~s~ 360 (764)
|++.+.+.++.-..|..++..+...-.+..++.|+.-+.+.+-..+ .|....... +....+++.+-.+. ++.+..
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 9999887777777788899999998899999999987776665444 433443333 46677888887777 666666
Q ss_pred CCcEEEeeCC
Q 046871 361 DSSVHRWPAE 370 (764)
Q Consensus 361 dg~I~iwd~~ 370 (764)
+|.+.+-..+
T Consensus 933 ~gNlf~v~~d 942 (1096)
T KOG1897|consen 933 SGNLFTVRKD 942 (1096)
T ss_pred cccEEEEEec
Confidence 7888776555
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.94 Score=45.17 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=86.7
Q ss_pred EEEEEcCC-CCEEEEEeCCC-eEEEEeCCCCceeEEeccCCc--CeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 046871 221 YALAMNDS-GNLLVSGGTEK-VVRVWDPRTGSKTIKLRGHTD--NIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQ 291 (764)
Q Consensus 221 ~~l~~sp~-g~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~ 291 (764)
..++++|. ..-++.+-.-| ...++|....+....+...++ -.-.=+|||||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 34566663 33344444434 457889888877666543222 11224699999999876443 67999998753
Q ss_pred -eeeEEEeeecCceEEEEEcCCCCEEEEecCC-------C-----------cEEEEeCCCCeEEEEee-----cCCCeEE
Q 046871 292 -RCIHSYAVHTDSVWALASTPTFSHVYSGGRD-------L-----------SLYLTDLATRESLLLCT-----GEHPILQ 347 (764)
Q Consensus 292 -~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D-------g-----------~I~iwd~~~~~~~~~~~-----~~~~V~~ 347 (764)
..+..+..|.-....+.+.+||+.++.+... | .+.+.|-.+|+.+.... ..-.|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 4566677777777889999999999876421 1 12333333444332221 2346788
Q ss_pred EEeeCCc-eEEEeC
Q 046871 348 LALHDDN-IWVATT 360 (764)
Q Consensus 348 l~~spd~-l~~~s~ 360 (764)
++..+|+ +|.++.
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 8888888 777763
No 385
>PRK13684 Ycf48-like protein; Provisional
Probab=96.17 E-value=2.3 Score=45.26 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=86.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCceeE-EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeee
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRV-WDPRTGSKTI-KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~i-wd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~ 294 (764)
...++++.+.+++.+++++ ..|.+.. +|- .++.-. ....-...++++.+.++++.++++ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4578899999988766555 4454443 221 222111 122334578999999999877665 5676653233334322
Q ss_pred EEEeee----cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee----cCCCeEEEEeeCCc-eEEEeCCCcEE
Q 046871 295 HSYAVH----TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT----GEHPILQLALHDDN-IWVATTDSSVH 365 (764)
Q Consensus 295 ~~l~~h----~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~~~~V~~l~~spd~-l~~~s~dg~I~ 365 (764)
.....+ ...+.++.+.+++..++ ++.+|.|.. ....++.-.... .....+.+.+..+. .++.+..|.|-
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 221111 23477889998876554 555676653 444444333222 12357777776655 88888889887
Q ss_pred EeeC
Q 046871 366 RWPA 369 (764)
Q Consensus 366 iwd~ 369 (764)
.|+-
T Consensus 327 ~~~~ 330 (334)
T PRK13684 327 RYVG 330 (334)
T ss_pred EecC
Confidence 7753
No 386
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.39 Score=54.89 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=44.9
Q ss_pred eEEEEeCCCCcee--EEeccCCcCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCC-C--eeeEEEeeecCceEEEE
Q 046871 240 VVRVWDPRTGSKT--IKLRGHTDNIRSLLLDSTGRYCLSGSSD------SMIRLWDLGQ-Q--RCIHSYAVHTDSVWALA 308 (764)
Q Consensus 240 ~I~iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~D------g~I~iwdl~~-~--~~~~~l~~h~~~V~~l~ 308 (764)
.+..||+.+.+-. ..+.........++ -+++..+.|+.+ ..+..||..+ . ..+..+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 4778888766432 22211111111222 246666666654 2366788765 2 33333332222222222
Q ss_pred EcCCCCEEEEecCCC--cEEEEeCCCCe
Q 046871 309 STPTFSHVYSGGRDL--SLYLTDLATRE 334 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg--~I~iwd~~~~~ 334 (764)
+ +++..+.||.|| .+..||..+.+
T Consensus 511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 H--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E--CCEEEEEeeecceeehhhcCccccc
Confidence 2 566777787777 55566655543
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.08 E-value=2.2 Score=44.29 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=62.6
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC-CCCe
Q 046871 256 RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL-ATRE 334 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~-~~~~ 334 (764)
..-.+.+..+..++||+++++++.-....-||-....-...-+.....|.+|.|.|++.+.+.+ +.|.|++-+. ...+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445778899999999999888766666678764322222222345789999999998776654 8899998882 2222
Q ss_pred EEEE--e---ecCCCeEEEEeeCCc-eEEEeCCCcEEE
Q 046871 335 SLLL--C---TGEHPILQLALHDDN-IWVATTDSSVHR 366 (764)
Q Consensus 335 ~~~~--~---~~~~~V~~l~~spd~-l~~~s~dg~I~i 366 (764)
.-.. . .....+..+++.++. +++++..|.+.+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 2111 1 123458899999888 888888886643
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.088 Score=56.47 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=98.7
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCC-e-eeEEE
Q 046871 228 SGNLLV-SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRY-------CLSGSSDSMIRLWDLGQQ-R-CIHSY 297 (764)
Q Consensus 228 ~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-------l~sgs~Dg~I~iwdl~~~-~-~~~~l 297 (764)
+.++|+ ++.....++-.|+..|+.+..++-|.+ |.-+.+.|+.+. -+.|-+|..|.-||.+-. . .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 555667788899999999999987766 777778776542 245667888999998732 2 22233
Q ss_pred eeec----CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCC
Q 046871 298 AVHT----DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAE 370 (764)
Q Consensus 298 ~~h~----~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~ 370 (764)
+.|. ....|.+-..+ .+|+.||.+|.|++||--.......++ ...+|..+..+.+| .+.|+.+..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 3332 23456665555 479999999999999973333233333 47899999999999 7778888888887764
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.02 E-value=2.3 Score=44.07 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=80.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeee
Q 046871 215 GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294 (764)
Q Consensus 215 ~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~ 294 (764)
...+.+..+..+++|++++++.......-||.-...-...-+.-...|.+|.|+|++...+.+ ..|.|+.=+... ..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~ 218 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DG 218 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cc
Confidence 345778899999999999998777777788854322222223346789999999998776655 788888776211 11
Q ss_pred EEEee-------ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec----CCCeEEEEeeCC-ceEEEeCCC
Q 046871 295 HSYAV-------HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG----EHPILQLALHDD-NIWVATTDS 362 (764)
Q Consensus 295 ~~l~~-------h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~----~~~V~~l~~spd-~l~~~s~dg 362 (764)
.++.. ..-.+..++|.++....++|+. |.+ +...+.|+.=..... ...++.+.|.++ .-++.+.+|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 22221 1223789999988887776664 433 344555554333322 445778888655 477777888
Q ss_pred cEEEe
Q 046871 363 SVHRW 367 (764)
Q Consensus 363 ~I~iw 367 (764)
.|-.|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87666
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.86 E-value=0.68 Score=52.93 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=75.5
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCceeEE--eccCCcCeEEEEEcCCCCEEEEEeCCC------cEEEEeCCCCeee
Q 046871 228 SGNLLVSGGTEK-----VVRVWDPRTGSKTIK--LRGHTDNIRSLLLDSTGRYCLSGSSDS------MIRLWDLGQQRCI 294 (764)
Q Consensus 228 ~g~~l~sgs~dg-----~I~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~sgs~Dg------~I~iwdl~~~~~~ 294 (764)
+|.+.++||.|| .|-.||..+.+-... +.......-... -+|...++|+.++ ++..||..+.+-.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 377888898886 477888876543222 211111222222 2577778887654 4677887665432
Q ss_pred --EEEeeecCceEEEEEcCCCCEEEEecCCCc-----EEEEeCCCCeEEEEe--ecCCCeEEEEeeCCc-eEEEeCCC--
Q 046871 295 --HSYAVHTDSVWALASTPTFSHVYSGGRDLS-----LYLTDLATRESLLLC--TGEHPILQLALHDDN-IWVATTDS-- 362 (764)
Q Consensus 295 --~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~-----I~iwd~~~~~~~~~~--~~~~~V~~l~~spd~-l~~~s~dg-- 362 (764)
..+..-.... .++. -++...+.||.|+. |..||..+.+-.... .....-..++...+. .++|+.|+
T Consensus 458 ~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 458 LIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred ecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 2222111111 1222 25667778887763 777888776544432 223333344555555 56666554
Q ss_pred ---cEEEeeCCCC
Q 046871 363 ---SVHRWPAEGR 372 (764)
Q Consensus 363 ---~I~iwd~~~~ 372 (764)
+|..||..+.
T Consensus 536 ~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 536 NLNTVECYDPETD 548 (571)
T ss_pred ccceeEEcCCCCC
Confidence 4566655543
No 391
>PHA02713 hypothetical protein; Provisional
Probab=95.77 E-value=0.51 Score=54.02 Aligned_cols=150 Identities=8% Similarity=0.036 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCcee--EEeccCCcCeEEEEEcCCCCEEEEEeCCC-------------------
Q 046871 228 SGNLLVSGGTEK-----VVRVWDPRTGSKT--IKLRGHTDNIRSLLLDSTGRYCLSGSSDS------------------- 281 (764)
Q Consensus 228 ~g~~l~sgs~dg-----~I~iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~Dg------------------- 281 (764)
+|.+.+.||.++ .+..||+.+.+-. ..+.........+++ +|+..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 467777777654 4888998765322 122211111222222 577777776542
Q ss_pred ----cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC------CcEEEEeCCC-Ce--EEEEeecCCCeEEE
Q 046871 282 ----MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD------LSLYLTDLAT-RE--SLLLCTGEHPILQL 348 (764)
Q Consensus 282 ----~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D------g~I~iwd~~~-~~--~~~~~~~~~~V~~l 348 (764)
.+..||..+.+-...-.........-+..-+++..+.||.+ ..+..||..+ .+ .+..+.......++
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 47778876643221111111111111122245666667654 2467888886 33 22333333334455
Q ss_pred EeeCCc-eEEEeCCC--cEEEeeCCCCCCceeee
Q 046871 349 ALHDDN-IWVATTDS--SVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 349 ~~spd~-l~~~s~dg--~I~iwd~~~~~~~~~~~ 379 (764)
+...+. .++|+.++ ++..||..+.+-....+
T Consensus 509 ~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 509 ILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred EEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 555555 56667677 67788887766544333
No 392
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.76 E-value=3.6 Score=44.21 Aligned_cols=256 Identities=14% Similarity=0.095 Sum_probs=130.5
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc-------cc---------cceeEEEEeCCC-eE
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES-------HV---------DWVNDAVLVGDN-TL 98 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~-------h~---------~~V~~v~~s~d~-~l 98 (764)
..+....| ||+|++++-.. ++.|.+++..++.. ...+..+ -. +.-..+.|+||+ +|
T Consensus 43 ~~~~~~~~-----sP~g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l 115 (353)
T PF00930_consen 43 PKLQDAKW-----SPDGKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL 115 (353)
T ss_dssp TTBSEEEE------SSSTEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred ccccccee-----ecCCCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEE
Confidence 45666666 89999998875 57899999876421 1112222 11 123467899997 55
Q ss_pred EEEeC-CCcEEEecCCCCCeeeeeccccC---CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 99 VSCSS-DTTLKTWNCSSDGTCIRTLRQHS---DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 99 ~s~s~-Dg~V~vWd~~~~~~~~~~l~~h~---~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
+.... +..|+.+.+.. ..... -.+..+.+..+ |.--... .+.++|+.++.....
T Consensus 116 a~~~~d~~~v~~~~~~~-------~~~~~~~yp~~~~~~YPk~-G~~np~v----~l~v~~~~~~~~~~~---------- 173 (353)
T PF00930_consen 116 AFLRFDEREVPEYPLPD-------YSPPDSQYPEVESIRYPKA-GDPNPRV----SLFVVDLASGKTTEL---------- 173 (353)
T ss_dssp EEEEEE-TTS-EEEEEE-------ESSSTESS-EEEEEE--BT-TS---EE----EEEEEESSSTCCCEE----------
T ss_pred EEEEECCcCCceEEeec-------cCCccccCCcccccccCCC-CCcCCce----EEEEEECCCCcEEEe----------
Confidence 54443 44455444311 11111 13445555322 2211111 367788876422100
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe--CC---CeEEEEeCCCC
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG--TE---KVVRVWDPRTG 249 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs--~d---g~I~iwd~~~~ 249 (764)
...........-+..+.|.++++.|+..- .+ ..+.++|..++
T Consensus 174 ---------------------------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 174 ---------------------------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG 220 (353)
T ss_dssp ------------------------------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred ---------------------------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence 00001123355688999999888444332 22 25777888877
Q ss_pred ceeEEeccC-Cc---CeEEEEEc-CCCCE-EEEEeCCCc--EEEEeCCCCeeeEEEeeecCceEE-EEEcCCCCEEE-Ee
Q 046871 250 SKTIKLRGH-TD---NIRSLLLD-STGRY-CLSGSSDSM--IRLWDLGQQRCIHSYAVHTDSVWA-LASTPTFSHVY-SG 319 (764)
Q Consensus 250 ~~~~~l~~h-~~---~V~~l~~s-pdg~~-l~sgs~Dg~--I~iwdl~~~~~~~~l~~h~~~V~~-l~~spd~~~l~-sg 319 (764)
+....+... .. .-....+. +++.. +.....||- |.+++...+. ...+....-.|.. +.++++++.|+ ++
T Consensus 221 ~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 221 ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEe
Confidence 654433221 12 22345554 65554 445556775 5555665555 4455555556755 56788877665 66
Q ss_pred cCC----CcEEEEeCC-CCeEEEEeecCCCeEEEEeeCCc
Q 046871 320 GRD----LSLYLTDLA-TRESLLLCTGEHPILQLALHDDN 354 (764)
Q Consensus 320 s~D----g~I~iwd~~-~~~~~~~~~~~~~V~~l~~spd~ 354 (764)
..+ ..|+.-++. .+....+......-..+.|+|++
T Consensus 300 ~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 300 NGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp SSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred cCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 543 357777777 55554444333333699999998
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.054 Score=62.71 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=57.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEE---cCCCCEEEEEeCCCcEEEEeC
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL---DSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---spdg~~l~sgs~Dg~I~iwdl 288 (764)
..++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.+-+ ..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3678999999999999999999999999999999999888877766655543 445667888877775 5654
No 394
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=2.9 Score=42.10 Aligned_cols=197 Identities=11% Similarity=0.066 Sum_probs=114.6
Q ss_pred cccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 83 HVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 83 h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
-.+-+.++.++.+ +...+..+.-++|.|+.....+...-. ...+.-.++..+ +++...+..|.-+.+.|+.+...
T Consensus 85 ~~~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs---Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEeccc-EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec---CCEEEEeeccCcEEEEECCCCCC
Confidence 3455667777654 455566677799999865444433221 223566677666 88998888776688899987533
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVV 241 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I 241 (764)
+... -........-..++.+ |++-..+..|+-+
T Consensus 161 P~la---------------------------------------------grya~~~~d~~~v~IS--Gn~AYvA~~d~GL 193 (370)
T COG5276 161 PQLA---------------------------------------------GRYALPGGDTHDVAIS--GNYAYVAWRDGGL 193 (370)
T ss_pred ceee---------------------------------------------eeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence 2110 0111122223556666 7888888889999
Q ss_pred EEEeCCCCcee---EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-cCceEEE-EEcCCCCEE
Q 046871 242 RVWDPRTGSKT---IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-TDSVWAL-ASTPTFSHV 316 (764)
Q Consensus 242 ~iwd~~~~~~~---~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-~~~V~~l-~~spd~~~l 316 (764)
.+.|+...... .... ....+.++..+++-.+++.. +.-+.+-|....+....+..- +..+.++ .+.-.+++.
T Consensus 194 ~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA 270 (370)
T ss_pred EEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence 99998765332 2221 12267888888766555544 334667777655543333211 1222222 233345666
Q ss_pred EEecCCCcEEEEeCCCC
Q 046871 317 YSGGRDLSLYLTDLATR 333 (764)
Q Consensus 317 ~sgs~Dg~I~iwd~~~~ 333 (764)
+....+.-+.+-|+++.
T Consensus 271 Yvadga~gl~~idisnp 287 (370)
T COG5276 271 YVADGAKGLPIIDISNP 287 (370)
T ss_pred eeeccccCceeEeccCC
Confidence 66666666666676544
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=0.047 Score=52.47 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeE-EeccCCcCeEE-EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec-CceE
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTI-KLRGHTDNIRS-LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-DSVW 305 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~-l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-~~V~ 305 (764)
+..+++|+.+|.|.+|.....-... .+..-...|.+ |..-.++.+..+++.||.||.|++.-.+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 5679999999999999876221111 11111222322 2233456688899999999999998888777777676 3343
Q ss_pred EEEEcCCCCEEEEe--cCCCcEEEEeC
Q 046871 306 ALASTPTFSHVYSG--GRDLSLYLTDL 330 (764)
Q Consensus 306 ~l~~spd~~~l~sg--s~Dg~I~iwd~ 330 (764)
.+..+-.+++++.+ |.|..++.|++
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcch
Confidence 33333334444444 44444444444
No 396
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.52 E-value=5 Score=44.16 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCEEEEEeC---C-CeEEEEeCCCC----ceeEEeccCCcCeEEEEEcCCCCEEEEEe---CCCcEEEEeC
Q 046871 220 VYALAMNDSGNLLVSGGT---E-KVVRVWDPRTG----SKTIKLRGHTDNIRSLLLDSTGRYCLSGS---SDSMIRLWDL 288 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~---d-g~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~sgs---~Dg~I~iwdl 288 (764)
...+..++++++|+.... + ..+.+.|+..+ .....+......+....-...+.+++... ..+.|...++
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l 308 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDL 308 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEET
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecc
Confidence 567888999998775432 2 45888888875 23333433444443333222344444332 2356777777
Q ss_pred CCCee---eEEEeeecCc--eEEEEEcCCCCEEE-EecCCC--cEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc---e
Q 046871 289 GQQRC---IHSYAVHTDS--VWALASTPTFSHVY-SGGRDL--SLYLTDLATRESLLLCT--GEHPILQLALHDDN---I 355 (764)
Q Consensus 289 ~~~~~---~~~l~~h~~~--V~~l~~spd~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~---l 355 (764)
..... ...+-.|... +..+.. .+.+|+ ..-.++ .|+++++..+....... ..+.|..+...++. .
T Consensus 309 ~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 309 ADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp TSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred cccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 76542 3355556553 444444 344554 444444 68899998333333333 23445566555555 2
Q ss_pred EE-EeC--CCcEEEeeCCCCCCc
Q 046871 356 WV-ATT--DSSVHRWPAEGRNPQ 375 (764)
Q Consensus 356 ~~-~s~--dg~I~iwd~~~~~~~ 375 (764)
+. .+- -+++..||+.+++..
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEeCCCCCCEEEEEECCCCCEE
Confidence 22 222 367888888887643
No 397
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=1.1 Score=50.62 Aligned_cols=187 Identities=11% Similarity=0.031 Sum_probs=92.6
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeee--c--cccCCceEEEEEecC
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRT--L--RQHSDYVTCLAAAEK 137 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~--l--~~h~~~V~~l~~~p~ 137 (764)
-.|+|++... ..+..+.-....+-.+.|+.+..|+....||+++||++. +..+.. . ......|..+.|. .
T Consensus 64 ~~I~If~~sG---~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~svg~e~~~~~I~ec~~f-~ 137 (829)
T KOG2280|consen 64 PYIRIFNISG---QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSVGFESQMSDIVECRFF-H 137 (829)
T ss_pred eeEEEEeccc---cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc--hhhhcccccccccccCceeEEEEe-c
Confidence 4588888873 444444333337778999999899999999999999973 333322 1 1222345555555 3
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCCCCC-CCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC
Q 046871 138 NSNIVASGGLGAEVFIWDIEAALAPSKSGD-AMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH 216 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 216 (764)
+|-.+.+. .+..+.+-+...... .+..+ .........+...........+..+.......+............+...
T Consensus 138 ~GVavlt~-~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NGVAVLTV-SGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred CceEEEec-CCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 33333332 222333333333111 11111 1000000111100000000011111000000111111111111222233
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR 256 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~ 256 (764)
.+.+..+.++|+.++|+--...|.|.+-+....+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4678889999999999999999999999888777766665
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=3.7 Score=41.48 Aligned_cols=146 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-------ec--cC-CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046871 221 YALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK-------LR--GH-TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~-------l~--~h-~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~ 290 (764)
-.+.+..+|++.++--.++.+.++.+.....+.. +. .+ +.....++|+|....|+.+-.-.-+.||.+..
T Consensus 132 E~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 132 ETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred hHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 3556666666666666677777776554422211 11 12 45678899999999999888877777777653
Q ss_pred Cee---eEEEeeec-------CceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCeEEEEe---ecCC-------CeEEEE
Q 046871 291 QRC---IHSYAVHT-------DSVWALASTP-TFSHVYSGGRDLSLYLTDLATRESLLLC---TGEH-------PILQLA 349 (764)
Q Consensus 291 ~~~---~~~l~~h~-------~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~~~~~~~~~~---~~~~-------~V~~l~ 349 (764)
... ++....++ ..|.++.|++ .+..++-+..++.+.-.|....- +..+ .+.+ ..-.++
T Consensus 212 ~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGia 290 (316)
T COG3204 212 SPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIA 290 (316)
T ss_pred CCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeE
Confidence 321 11111121 2367788876 45666677778888888876442 2222 2211 245677
Q ss_pred eeCCc-eEEEeCCCcEEEe
Q 046871 350 LHDDN-IWVATTDSSVHRW 367 (764)
Q Consensus 350 ~spd~-l~~~s~dg~I~iw 367 (764)
..+++ |++.++-+-.+.+
T Consensus 291 mDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 291 MDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred ECCCCCEEEEecCCcceec
Confidence 88887 8888876655554
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.20 E-value=1.1 Score=43.37 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=97.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccceeecc-----cccceeEEEEeCCCeEEEEeC----------CCcEEEecCCCCCee
Q 046871 54 YLFTGSRDGTLKRWSLADDVGSCSATFES-----HVDWVNDAVLVGDNTLVSCSS----------DTTLKTWNCSSDGTC 118 (764)
Q Consensus 54 ~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~-----h~~~V~~v~~s~d~~l~s~s~----------Dg~V~vWd~~~~~~~ 118 (764)
+.+.++..-.|.-||.........+++.. .....++-..+|+|++..|.. .|.++.|-. +..
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~---~h~ 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA---GHQ 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc---CCC
Confidence 34444444445567743322333333211 134566667778886655543 244555553 222
Q ss_pred eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEe--CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 119 IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD--IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 119 ~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwd--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
+..+...-+--+.++|......+.++-+.+-.|.-|| ..++.....
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-------------------------------- 197 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-------------------------------- 197 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCc--------------------------------
Confidence 2222223334467888833344556667788888888 444322111
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
-.+++..... ...+ -.--.+++..+|++.++.-..++|...|+.+|+.+.+++-.+..|++++|--
T Consensus 198 -~~i~dlrk~~-----~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 198 -KVIFDLRKSQ-----PFES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred -ceeEEeccCC-----CcCC-CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 0011111000 0000 0112344566899999988999999999999999999998899999999974
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=3.2 Score=41.91 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=84.7
Q ss_pred eccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 255 LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-TDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 255 l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
+.+-...+.++.|+|+.+.|++......-.|+=...|..+.++.-. -...-.|.+.-++.++++--+++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455667999999999999999888887777777788888876521 122346777778888888888999999887655
Q ss_pred eEEEE-----e-----ec-CCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 334 ESLLL-----C-----TG-EHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 334 ~~~~~-----~-----~~-~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
..+.. + .. +...-.++|.|.. ++++-+-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 32211 1 12 4567889999987 8888887777777665
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.28 Score=52.77 Aligned_cols=140 Identities=14% Similarity=0.265 Sum_probs=92.9
Q ss_pred cEEE-EEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC---e-----EEEEeCCCcEEEecCCCCCe-eeeec
Q 046871 53 DYLF-TGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN---T-----LVSCSSDTTLKTWNCSSDGT-CIRTL 122 (764)
Q Consensus 53 ~~L~-sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~---~-----l~s~s~Dg~V~vWd~~~~~~-~~~~l 122 (764)
++|+ ++.....++-.|++. ++.+....-|.+ |+-+.+.|+. . -+.|-+|..|.-||+...+. .+..-
T Consensus 346 nlil~~~~~~~~l~klDIE~--GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIER--GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ceEeeCCCCcCcceeeeccc--ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3443 444455666677777 777888877776 7777788763 2 24566788899999865544 22222
Q ss_pred cccC----CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcc
Q 046871 123 RQHS----DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSI 198 (764)
Q Consensus 123 ~~h~----~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 198 (764)
+.|. ....|.+-. ...++++|+.+|.|++||--..
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~--------------------------------------- 461 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGR--------------------------------------- 461 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhh---------------------------------------
Confidence 3332 234555554 5678999999999999997321
Q ss_pred cccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 046871 199 SAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDP 246 (764)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~ 246 (764)
.....+.+...+|..+..+.+|++|++.+. ..+.+.++
T Consensus 462 ---------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 462 ---------RAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ---------hhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 111225666888999999999998887654 56666665
No 402
>PRK10115 protease 2; Provisional
Probab=94.98 E-value=7.8 Score=45.60 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred CcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC------CcEEEE
Q 046871 218 ESVYALAMNDSGNLLVSGGT-----EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD------SMIRLW 286 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D------g~I~iw 286 (764)
-.+..+.++|+|++|+.+.. ...|++.|+.+++.+........ ..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999998886533 23688999988864432221211 469999999877655442 358888
Q ss_pred eCCCC--eeeEEEeeecCceE-EEEEcCCCCEEEEec---CCCcEEEEeC
Q 046871 287 DLGQQ--RCIHSYAVHTDSVW-ALASTPTFSHVYSGG---RDLSLYLTDL 330 (764)
Q Consensus 287 dl~~~--~~~~~l~~h~~~V~-~l~~spd~~~l~sgs---~Dg~I~iwd~ 330 (764)
++.++ +-...+.......+ .+..+.++++++..+ .++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33334443333333 333355777766333 3457888884
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.88 E-value=0.014 Score=65.94 Aligned_cols=189 Identities=12% Similarity=0.095 Sum_probs=108.1
Q ss_pred CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
.+.+++-+.......-..+++..+.|-.++|...+...+. -.-|.+.+||+.--. .....
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~--G~iq~---------------- 169 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQ--GEIQP---------------- 169 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhc--ccccc----------------
Confidence 4567777753322222456677888888888744444443 344678999986410 00000
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEE---cCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM---NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD 260 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~---sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 260 (764)
...+.........+.-+.| -++..++..+-.++.|++........ ..+.+|..
T Consensus 170 -----------------------~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~ 225 (1283)
T KOG1916|consen 170 -----------------------QLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQ 225 (1283)
T ss_pred -----------------------ceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCC
Confidence 0011111111222233333 33566777888888888876654322 33445665
Q ss_pred CeEEE-----------EEcCCCCEEEEEeCCCcEEEEeC-----CCCeeeEEEeeecC-ceEEEEEcCCC---------C
Q 046871 261 NIRSL-----------LLDSTGRYCLSGSSDSMIRLWDL-----GQQRCIHSYAVHTD-SVWALASTPTF---------S 314 (764)
Q Consensus 261 ~V~~l-----------~~spdg~~l~sgs~Dg~I~iwdl-----~~~~~~~~l~~h~~-~V~~l~~spd~---------~ 314 (764)
.+..+ .+||||+.++.++.||.++.|.+ ...+|++.++.|++ +-.|.-|+.+- .
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~ 305 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWV 305 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeE
Confidence 44443 36899999999999999888865 34577888888873 33333344322 2
Q ss_pred EEEEec-CCCcEEEEeCCCCeEE
Q 046871 315 HVYSGG-RDLSLYLTDLATRESL 336 (764)
Q Consensus 315 ~l~sgs-~Dg~I~iwd~~~~~~~ 336 (764)
++++++ .+..+++|.....+++
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 344443 3556888877665554
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.86 E-value=5.5 Score=47.09 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=39.2
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCC--------ceEEEEEec---------------CCCcEEEEEeCCCeE
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD--------YVTCLAAAE---------------KNSNIVASGGLGAEV 151 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~--------~V~~l~~~p---------------~~~~~lasg~~dg~I 151 (764)
++.++.++.++.|.-.|. .+++.+-.+..... ....+++.. .....++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 456777777777777775 44554433322111 112233321 123477788889999
Q ss_pred EEEeCCCCCCC
Q 046871 152 FIWDIEAALAP 162 (764)
Q Consensus 152 ~iwdl~~~~~~ 162 (764)
.-.|.++++..
T Consensus 273 iALDA~TGk~~ 283 (764)
T TIGR03074 273 IALDADTGKLC 283 (764)
T ss_pred EEEECCCCCEE
Confidence 99998887543
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.78 E-value=0.93 Score=49.00 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=80.7
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cc--eeEEeccCCcCeEEEEEcCCCCEEEEEeCCC
Q 046871 218 ESVYALAMNDSGNLLVSGG-----------TEK-VVRVWDPRT--GS--KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS 281 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs-----------~dg-~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg 281 (764)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-...+.|++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4456889999999777642 223 777776543 32 223443334456889999888 44444444
Q ss_pred cEEEEeCCC-C----e--ee-EEEee----ecCceEEEEEcCCCCEEEEecCC-------------------CcEEEEeC
Q 046871 282 MIRLWDLGQ-Q----R--CI-HSYAV----HTDSVWALASTPTFSHVYSGGRD-------------------LSLYLTDL 330 (764)
Q Consensus 282 ~I~iwdl~~-~----~--~~-~~l~~----h~~~V~~l~~spd~~~l~sgs~D-------------------g~I~iwd~ 330 (764)
..++.|... + + .+ ..+.. +......++|.|||.+.++-+.. |.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 334445421 1 1 11 12322 12347789999999876654421 44566666
Q ss_pred CCCeEEEEeecCCCeEEEEeeCCc-eEEEeC
Q 046871 331 ATRESLLLCTGEHPILQLALHDDN-IWVATT 360 (764)
Q Consensus 331 ~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~ 360 (764)
.+++.............++|++++ ++++..
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 555443333333445789999988 665544
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.74 E-value=2.5 Score=45.36 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=94.6
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCC----ceeEEecc---CC----cCeEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 046871 228 SGNLLVSGG-TEKVVRVWDPRTG----SKTIKLRG---HT----DNIRSLLLDSTGRYCLSGSS------DSMIRLWDLG 289 (764)
Q Consensus 228 ~g~~l~sgs-~dg~I~iwd~~~~----~~~~~l~~---h~----~~V~~l~~spdg~~l~sgs~------Dg~I~iwdl~ 289 (764)
+.++|+..+ ..+.|.|.|+.+. +....+.. +. ..-..+..-|+|+.++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 356677666 6788999998743 23333321 11 12234445588988887532 2458888888
Q ss_pred CCeeeEEEeeecC---ceEEEEEcCCCCEEEEecC--------------------CCcEEEEeCCCCeEEEEeecC---C
Q 046871 290 QQRCIHSYAVHTD---SVWALASTPTFSHVYSGGR--------------------DLSLYLTDLATRESLLLCTGE---H 343 (764)
Q Consensus 290 ~~~~~~~l~~h~~---~V~~l~~spd~~~l~sgs~--------------------Dg~I~iwd~~~~~~~~~~~~~---~ 343 (764)
+.+.........+ --+.+-+.|..+.++|... ...+.+||+.+.+.++.+... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8887777764332 2456677888888887652 357999999999999988853 2
Q ss_pred CeEEEEeeCC--c---eEEEeCCCcEEEeeC-CCCCCc--eeeecCCcceeccccccccccccCCCCCcccCCCCCCc--
Q 046871 344 PILQLALHDD--N---IWVATTDSSVHRWPA-EGRNPQ--KVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNF-- 413 (764)
Q Consensus 344 ~V~~l~~spd--~---l~~~s~dg~I~iwd~-~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-- 413 (764)
-...+.|..+ . ++.+.-.++|..|-- +.++-. +++...... .++ +..|..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~-------------v~~-------~~lp~ml~ 305 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK-------------VEG-------WILPEMLK 305 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE---------------S-------S---GGGG
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc-------------cCc-------cccccccc
Confidence 3556666443 3 555555566655543 332211 111100000 000 000000
Q ss_pred cccCCC-CceEeEEecCCcEE-EEeeCCCcEEEEEccc
Q 046871 414 TIPGIP-GIVQHEILNNRRHV-LTKDAAGSVKLWEITR 449 (764)
Q Consensus 414 ~i~g~~-~i~~~~~s~dg~~l-~t~s~dG~V~lWdi~t 449 (764)
.+.... =|+.+.+|-|.|+| +++=.+|.|+.||+..
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 000011 26788999999988 4556699999999974
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=1.2 Score=50.20 Aligned_cols=177 Identities=11% Similarity=0.071 Sum_probs=103.3
Q ss_pred CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE-e---ecCCCeEEEEeeCCc
Q 046871 279 SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL-C---TGEHPILQLALHDDN 354 (764)
Q Consensus 279 ~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~-~---~~~~~V~~l~~spd~ 354 (764)
.--.|+||++ +|+.+..+....+.+-.+.|+.+. -|++...+|++++|++........ . .....|..+.+..+|
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 3456888887 677777766556688899999764 577778999999999864322210 1 112335555555588
Q ss_pred eEEEeCCCcEEEeeCCCCCCceeeec-CCccee-ccc-cccccccc---cCCC--C-----CcccCCCCCCccccCCCCc
Q 046871 355 IWVATTDSSVHRWPAEGRNPQKVFQR-GGSFIA-GNL-SFSRARVS---LEGS--T-----PVSSRFKEPNFTIPGIPGI 421 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~-~~~-~~s~~~~~---~~~~--~-----~~~~~~~~~~~~i~g~~~i 421 (764)
+++-+.+|.+.+-+-.+.......+. +..... .+. .+.+.+.+ ++-. + .+.....+..........+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 88888887776554433322222221 111000 000 01111110 0000 0 0000111122223335678
Q ss_pred eEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecC
Q 046871 422 VQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 422 ~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~ 457 (764)
.++.+|+++++|+--.++|.|.+-++...+++.+|.
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 999999999999999999999999998888888874
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.52 E-value=8.3 Score=41.53 Aligned_cols=152 Identities=9% Similarity=0.106 Sum_probs=79.4
Q ss_pred EEEcCCCCEEEEE--eC----CCeEEEEeCCCCceeEEeccCC---cCeEEEEEcCCCCEEEEEeC--------------
Q 046871 223 LAMNDSGNLLVSG--GT----EKVVRVWDPRTGSKTIKLRGHT---DNIRSLLLDSTGRYCLSGSS-------------- 279 (764)
Q Consensus 223 l~~sp~g~~l~sg--s~----dg~I~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l~sgs~-------------- 279 (764)
+..-|+|++++++ .. -|.+.++|-++.+......... ..-..+-+.|..+.++|...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 3344788888874 22 3468888988877777665422 23456778888888887642
Q ss_pred ------CCcEEEEeCCCCeeeEEEeeecC--ceEEEEE--cCCCCEEEE-ecCCCcEEEEeC-CCCe----EEEEeec--
Q 046871 280 ------DSMIRLWDLGQQRCIHSYAVHTD--SVWALAS--TPTFSHVYS-GGRDLSLYLTDL-ATRE----SLLLCTG-- 341 (764)
Q Consensus 280 ------Dg~I~iwdl~~~~~~~~l~~h~~--~V~~l~~--spd~~~l~s-gs~Dg~I~iwd~-~~~~----~~~~~~~-- 341 (764)
-.++.+||+.+.+.++++....+ ....|.| .|+..+=++ +.-..+|..|-- +.++ .+..+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 35799999999999999985543 3556777 455555333 334445555433 3332 1111111
Q ss_pred ----------------CCCeEEEEeeCCc--eEEEeC-CCcEEEeeCCCCCC
Q 046871 342 ----------------EHPILQLALHDDN--IWVATT-DSSVHRWPAEGRNP 374 (764)
Q Consensus 342 ----------------~~~V~~l~~spd~--l~~~s~-dg~I~iwd~~~~~~ 374 (764)
..-|+.|.+|.|. |++++. .|.|+.||+.....
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 1237889999888 777775 89999999987543
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.51 E-value=0.12 Score=36.88 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=31.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT 252 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~ 252 (764)
....|.+++|+|..++||.|+.+|.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3556999999999999999999999999998 66554
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.42 E-value=6.2 Score=39.70 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeccC-CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE
Q 046871 220 VYALAMNDSGNLLVSGGTEK--VVRVWDPRTGSKTIKLRGH-TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS 296 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~dg--~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~ 296 (764)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-. .---..++... ++.....=.++...+||..+.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 45778867787777877766 7999999999876654322 12223444443 23333444688999999999999998
Q ss_pred EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec---CC---CeEEEEeeCCceEEEeC-CCcEEEeeC
Q 046871 297 YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG---EH---PILQLALHDDNIWVATT-DSSVHRWPA 369 (764)
Q Consensus 297 l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~---~V~~l~~spd~l~~~s~-dg~I~iwd~ 369 (764)
+.. .+.=|.++. |++.|+..+....++++|..+.+....+.. .. .++.+.+....+++--. ...|.+.|.
T Consensus 126 ~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 126 FPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp EE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred Eec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 874 356688884 566777777778999999988776655442 22 35667777444555433 556777788
Q ss_pred CCCCCceeee
Q 046871 370 EGRNPQKVFQ 379 (764)
Q Consensus 370 ~~~~~~~~~~ 379 (764)
.+++....+.
T Consensus 203 ~tG~V~~~iD 212 (264)
T PF05096_consen 203 ETGKVVGWID 212 (264)
T ss_dssp TT-BEEEEEE
T ss_pred CCCeEEEEEE
Confidence 8777665543
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=94.39 E-value=8.3 Score=41.00 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=62.6
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCeeeEEEe-eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRL-WDLGQQRCIHSYA-VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~i-wdl~~~~~~~~l~-~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
...+.++.+.+++.+++++ ..|.+.. +|- .++.-.... .-...++++.+.++++.++.+ ..|.+++-+...+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4578899999988766655 4565443 221 222222222 233568899999998876665 4676654334444332
Q ss_pred EEee-----cCCCeEEEEeeCCc-eEEEeCCCcEE
Q 046871 337 LLCT-----GEHPILQLALHDDN-IWVATTDSSVH 365 (764)
Q Consensus 337 ~~~~-----~~~~V~~l~~spd~-l~~~s~dg~I~ 365 (764)
.... ....+..+.+.+++ +++++.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence 2111 12357888898887 88888888665
No 412
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=94.28 E-value=0.25 Score=40.63 Aligned_cols=83 Identities=16% Similarity=0.301 Sum_probs=67.6
Q ss_pred ceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q 046871 637 KCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLK 716 (764)
Q Consensus 637 k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (764)
||...|+|--+ +|.+++.|.-.+.=+.+-.++.++..||.+.
T Consensus 1 kv~i~~~~~g~--~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~------------------------------------ 42 (87)
T cd01612 1 KVTIRFKPIGS--APILKQKVFKISATQSFQAVIDFLRKRLKLK------------------------------------ 42 (87)
T ss_pred CeEEEEEECCC--CccccccEEEeCCCCCHHHHHHHHHHHhCCC------------------------------------
Confidence 78888998764 5788888999999999999999999999431
Q ss_pred cccCCCCcEEEEeCCEecC-CCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 717 SWQKLRPSIEILCNNQVLS-PDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 717 ~~~~~~~~~el~c~~~~~~-~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+++.|=|+||+..+| |+.+++.+=..+ +..|.|.++|..-+
T Consensus 43 ----~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys~~~ 84 (87)
T cd01612 43 ----ASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYCKTV 84 (87)
T ss_pred ----ccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEeCcc
Confidence 245678999997555 568999998888 88999999997644
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.23 E-value=2.2 Score=47.09 Aligned_cols=144 Identities=15% Similarity=0.051 Sum_probs=87.6
Q ss_pred CCCcEEEEEEcCC----CCEEEEEeCCCeEEEEeCC-----CCceeEEeccC---Cc--CeEEEEEcCCCCEEEEEeCCC
Q 046871 216 HKESVYALAMNDS----GNLLVSGGTEKVVRVWDPR-----TGSKTIKLRGH---TD--NIRSLLLDSTGRYCLSGSSDS 281 (764)
Q Consensus 216 ~~~~V~~l~~sp~----g~~l~sgs~dg~I~iwd~~-----~~~~~~~l~~h---~~--~V~~l~~spdg~~l~sgs~Dg 281 (764)
.-..|++++|.|- ...+++.-..+.|.+|-+. .++.+..-..+ .- --....|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3456899999884 2245555667899999874 22222221111 11 123467999888777655544
Q ss_pred cEEEEeCCCC--eeeEEEeeecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCe-----EEEEeecCCCeEEEEeeCC
Q 046871 282 MIRLWDLGQQ--RCIHSYAVHTDSVWALASTPTFSHVYSG-GRDLSLYLTDLATRE-----SLLLCTGEHPILQLALHDD 353 (764)
Q Consensus 282 ~I~iwdl~~~--~~~~~l~~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~~~~-----~~~~~~~~~~V~~l~~spd 353 (764)
.-.+++++.. +....+ ...+.|.|.+|.+||+.|+.+ +..=.-++||-.... ....+...+.|.++.-.-|
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 4445665432 222233 356789999999999887744 444456899865432 1224445667888877777
Q ss_pred c-eEEEeC
Q 046871 354 N-IWVATT 360 (764)
Q Consensus 354 ~-l~~~s~ 360 (764)
. ++++++
T Consensus 214 sqVAvaTE 221 (671)
T PF15390_consen 214 SQVAVATE 221 (671)
T ss_pred ceEEEEec
Confidence 6 777765
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.16 E-value=1.2 Score=50.63 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=77.5
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-eecCceEEEEE--cCCCCEEEEecCCCcEEEEeCC-----
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA-VHTDSVWALAS--TPTFSHVYSGGRDLSLYLTDLA----- 331 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-~h~~~V~~l~~--spd~~~l~sgs~Dg~I~iwd~~----- 331 (764)
....-+.-+.-++..++-+...++.|||.+.+.....-. ...+.|..+.| .|+++.+++.|....|.++.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 345555555556655555556679999998887544433 34678999998 5899999999999999998531
Q ss_pred C----CeEEEEee----cCCCeEEEEeeCCceEEEeCCCcEEEeeCC
Q 046871 332 T----RESLLLCT----GEHPILQLALHDDNIWVATTDSSVHRWPAE 370 (764)
Q Consensus 332 ~----~~~~~~~~----~~~~V~~l~~spd~l~~~s~dg~I~iwd~~ 370 (764)
. ...+..+. ..++|....|.++|.++.+.++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 1 12222222 247899999999996666667788888754
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.78 E-value=7.1 Score=38.04 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=69.3
Q ss_pred EEEEEcCCCCEEE-EEeCCCeEEEEe--CCCC-----ceeEEeccC----CcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 221 YALAMNDSGNLLV-SGGTEKVVRVWD--PRTG-----SKTIKLRGH----TDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 221 ~~l~~sp~g~~l~-sgs~dg~I~iwd--~~~~-----~~~~~l~~h----~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
..++|+.+.+.+. +-+.+-.|.-|| ..+| +.+..++.. .-.--.+++..+|++.+++-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 4677877666554 445667787787 5554 334444321 112234566778999899989999999999
Q ss_pred CCCeeeEEEeeecCceEEEEE-cCCCCEEEE
Q 046871 289 GQQRCIHSYAVHTDSVWALAS-TPTFSHVYS 318 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~-spd~~~l~s 318 (764)
.+|+.+.++...+..|++++| -++-..+++
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 999999999999999999999 455555553
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.64 E-value=9.2 Score=38.82 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=65.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCcee-EEec--cCCcCeEEEEEcCCCCEEEEEe---CCCcEEEEeCC--
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWD-PRTGSKT-IKLR--GHTDNIRSLLLDSTGRYCLSGS---SDSMIRLWDLG-- 289 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd-~~~~~~~-~~l~--~h~~~V~~l~~spdg~~l~sgs---~Dg~I~iwdl~-- 289 (764)
.+..-.|++++...+....+...+++. ..+++.. ..+. .-...|+++.+||||..++... .++.|.+--+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 567778889877777766666666663 3333322 1221 1122899999999999887665 34667666542
Q ss_pred -CC------eeeEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 290 -QQ------RCIHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 290 -~~------~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
.+ ..+.........+..+.|.+++.+++.+...+
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 22 11111222345789999999988877665443
No 417
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.55 E-value=0.073 Score=53.80 Aligned_cols=40 Identities=35% Similarity=0.671 Sum_probs=33.9
Q ss_pred cEEEEeCCEecCCCCCHH-HHhhcccc-CCCcEEEEEEEeeC
Q 046871 724 SIEILCNNQVLSPDMSLA-TVRAYVWK-KPEDLVLNYRVVQG 763 (764)
Q Consensus 724 ~~el~c~~~~~~~~~~l~-tv~~~~wk-~~~d~~l~y~~~~~ 763 (764)
.|+|+|+|++|.-.+||. ..+..=|+ +.+-|+|+||+++.
T Consensus 195 ~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p~ 236 (331)
T KOG2660|consen 195 EIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKPK 236 (331)
T ss_pred hheeecCCccccchhhhhhhhhhhcccccCCcceeEeccccc
Confidence 389999999999999999 55565688 78889999997763
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.47 E-value=0.25 Score=35.28 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=29.8
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~ 293 (764)
...|.+++|+|...+|+.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5443
No 419
>PHA03098 kelch-like protein; Provisional
Probab=93.29 E-value=3.2 Score=47.42 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCC------cEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCC-----CcEEEecCCCCCe-e
Q 046871 51 GVDYLFTGSRDG------TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSD-----TTLKTWNCSSDGT-C 118 (764)
Q Consensus 51 d~~~L~sgs~Dg------~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~D-----g~V~vWd~~~~~~-~ 118 (764)
++.+++.||.++ .+..||..+........+....... +++...+..++.|+.+ ..+..||...... .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 456667776542 5677887765443333222122222 2223333456667655 3467788643221 1
Q ss_pred eeeccccCCceEEEEEecCCCcEEEEEeCC------CeEEEEeCCC
Q 046871 119 IRTLRQHSDYVTCLAAAEKNSNIVASGGLG------AEVFIWDIEA 158 (764)
Q Consensus 119 ~~~l~~h~~~V~~l~~~p~~~~~lasg~~d------g~I~iwdl~~ 158 (764)
...+. +...-.+++.. ++.+.+.||.+ ..+..||+.+
T Consensus 373 ~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 373 EPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 11111 11111222332 46677777632 3466777654
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.21 E-value=17 Score=42.77 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.4
Q ss_pred chhhhhhhhhcccccccceEEeeCceeEE--EEeCCC
Q 046871 460 SFEEKKEELFEMVSIPAWFTVDTRLGSLS--VHLDTP 494 (764)
Q Consensus 460 ~f~~~~~~~~~~~~~~~w~~vd~~~g~l~--v~l~~~ 494 (764)
++..+...+.....+|.-..+.+.+|.+. |-|+..
T Consensus 282 nyg~d~c~i~~l~~~p~~~via~~~G~l~h~i~l~~~ 318 (717)
T PF10168_consen 282 NYGLDACSILCLPSLPPVLVIATSNGKLYHCILLEAE 318 (717)
T ss_pred cCCCceeeEEEecCCCCEEEEEecCCeEEEEEEeccc
Confidence 45555566666677888889999999997 666543
No 421
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.08 E-value=2.3 Score=45.17 Aligned_cols=166 Identities=18% Similarity=0.144 Sum_probs=103.2
Q ss_pred eeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeccC-Cc----CeE-EEEEcCCCCEEEEEeCCCcE
Q 046871 211 IAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT-IKLRGH-TD----NIR-SLLLDSTGRYCLSGSSDSMI 283 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~-~~l~~h-~~----~V~-~l~~spdg~~l~sgs~Dg~I 283 (764)
..+......+..+-..|||+.+..-+. ..+.++++.+.... .++... .+ .|+ ++..-..|.-+++++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 334555667788889999998877654 67888887654321 122111 11 111 12222346678889999999
Q ss_pred EEE-eCCCC-e----eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eE
Q 046871 284 RLW-DLGQQ-R----CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IW 356 (764)
Q Consensus 284 ~iw-dl~~~-~----~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~ 356 (764)
.-| |.+.+ . .++.++-...++..+.-..+.+-+++-+..|++.++.....+.+.....-..+.-+++||.+ -+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence 887 44322 1 22223322344444444445667888899999998876665555444444467788999998 44
Q ss_pred EEeCCCcEEEeeCCCCCCcee
Q 046871 357 VATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 357 ~~s~dg~I~iwd~~~~~~~~~ 377 (764)
..-..|.|+++.+++..+.-+
T Consensus 373 l~e~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 373 LSEDQGKIRLAQLENRNPEIS 393 (733)
T ss_pred eeecCCceEEEEecCCCCCcc
Confidence 455568899999988766543
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.07 E-value=6.7 Score=39.79 Aligned_cols=106 Identities=12% Similarity=0.006 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEe-CCCCeE-
Q 046871 261 NIRSLLLDSTGRYCLSGS---SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTD-LATRES- 335 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs---~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd-~~~~~~- 335 (764)
.+.+.++++|++.++... ....++++... .....+. ....+..-.|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 23345555543 3222221 223677888999977776666666666663 333322
Q ss_pred -EEEee-c-CCCeEEEEeeCCc--eEEEe---CCCcEEEeeC
Q 046871 336 -LLLCT-G-EHPILQLALHDDN--IWVAT---TDSSVHRWPA 369 (764)
Q Consensus 336 -~~~~~-~-~~~V~~l~~spd~--l~~~s---~dg~I~iwd~ 369 (764)
+..-. . ...|..+.++||| +++.. .++.|.+=-+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 21111 1 2289999999999 43333 3456665443
No 423
>PHA03098 kelch-like protein; Provisional
Probab=92.88 E-value=5.6 Score=45.44 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=49.4
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCC
Q 046871 228 SGNLLVSGGTE------KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD--------SMIRLWDLGQQ 291 (764)
Q Consensus 228 ~g~~l~sgs~d------g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D--------g~I~iwdl~~~ 291 (764)
++.+.+.||.+ ..+..||+.+.+-.. .+....... +++ .-+++..+.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 46666777632 458889987653221 111111111 222 2345666666543 23788888765
Q ss_pred eeeE--EEeeecCceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCe
Q 046871 292 RCIH--SYAVHTDSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRE 334 (764)
Q Consensus 292 ~~~~--~l~~h~~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~ 334 (764)
+-.. .+.........+.+ +++.++.|+.+ ..|.+||..+.+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 4322 11111111111222 55666666654 356777766553
No 424
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=92.37 E-value=0.84 Score=39.52 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 046871 634 ENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRS 713 (764)
Q Consensus 634 ~~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
=+.+|+=++..++.+.+|.+.+.|.-.+.=+.|-.++..|..||.+.
T Consensus 21 yp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~--------------------------------- 67 (112)
T cd01611 21 YPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLR--------------------------------- 67 (112)
T ss_pred CCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCC---------------------------------
Confidence 35789999999998888999999999999999999999999998431
Q ss_pred CcccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 714 GLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 714 ~~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+++.|=|+||+.+.+++.+++.+=.-+=-.-|-|.|+|...+
T Consensus 68 -------~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~ 109 (112)
T cd01611 68 -------PEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSSEE 109 (112)
T ss_pred -------ccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEeccc
Confidence 245578999997666777777766544223566999997644
No 425
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=91.98 E-value=1.3 Score=37.65 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=66.2
Q ss_pred CcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 046871 635 NTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSG 714 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (764)
+.||+=++.+++.+.++.+.+.|.=.|+=+.|--.+..|..||.+.
T Consensus 14 P~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~---------------------------------- 59 (104)
T PF02991_consen 14 PDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLS---------------------------------- 59 (104)
T ss_dssp TTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT------------------------------------
T ss_pred CCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCC----------------------------------
Confidence 5789999999999988888888888899999999999999999532
Q ss_pred cccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEE
Q 046871 715 LKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRV 760 (764)
Q Consensus 715 ~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~ 760 (764)
++..|=|+||+.+++.++|++.|-.-+=..-|-|-+.|..
T Consensus 60 ------~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys~ 99 (104)
T PF02991_consen 60 ------PEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYSS 99 (104)
T ss_dssp ------TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEES
T ss_pred ------CCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEecc
Confidence 2345779999999999999999988765555668888864
No 426
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.88 E-value=13 Score=40.19 Aligned_cols=144 Identities=18% Similarity=0.162 Sum_probs=85.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeccCC--cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec-CceEE
Q 046871 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHT--DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-DSVWA 306 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-~~V~~ 306 (764)
..+..+..+|.|.-.|..+++.+.....-. ..+..-.+..+|+ ++.++.++.++.+|..+|+.+....... -.+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 345556788889999999888765443221 2222222333665 7788889999999998999888877655 11111
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCC----eEEEEeeCCc-eEEEeC--CCcEEEeeCCCCCCc
Q 046871 307 LASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHP----ILQLALHDDN-IWVATT--DSSVHRWPAEGRNPQ 375 (764)
Q Consensus 307 l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~----V~~l~~spd~-l~~~s~--dg~I~iwd~~~~~~~ 375 (764)
-..-.+ ..++.++.++.+...+-.+++.........+ +..-....++ ++.+.. ++.+.-.|..++...
T Consensus 148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 112223 3444555788999999888888766554321 1111112233 555555 455666666666544
No 427
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=5.7 Score=38.03 Aligned_cols=155 Identities=19% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEE-ecCCCcEEEEeCCCCeEEEEeecCCCeE
Q 046871 270 TGRYCLSGSSD--SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYS-GGRDLSLYLTDLATRESLLLCTGEHPIL 346 (764)
Q Consensus 270 dg~~l~sgs~D--g~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~V~ 346 (764)
+|.++.+.+.- ..|++||+.+++.+..-.-....+..=-...-+.+++. .=.+|.-.++|.++.+.+..+.-++.=+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45556665543 46999999988876654322111111111111233332 2247888899999888887777677677
Q ss_pred EEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEE
Q 046871 347 QLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEI 426 (764)
Q Consensus 347 ~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~ 426 (764)
.++-..+.++.+....+++.-|.++-.....++.... |. ++ ..+..+.+
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~----------------g~-pv--------------~~LNELE~ 183 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDD----------------GV-PV--------------SKLNELEW 183 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEEC----------------Ce-ec--------------ccccceee
Confidence 7777777788888888888877776555444431100 00 00 00111111
Q ss_pred ecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 427 LNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 427 s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
- ||...|-.=.+..|..-|..+|+.+.-+
T Consensus 184 V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 184 V-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred e-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 1 5666665555667888888888888776
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.18 E-value=23 Score=37.58 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=42.0
Q ss_pred cCeEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeeeEEE----eeecCceEEEEEcCCCCEEEEecCCCcEE
Q 046871 260 DNIRSLLLDS-------TGRYCLSGSSDSMIRLWDLGQQRCIHSY----AVHTDSVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 260 ~~V~~l~~sp-------dg~~l~sgs~Dg~I~iwdl~~~~~~~~l----~~h~~~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
..+..+.|-. .|.++++.-..+.|....+.....+... ......+..+++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4566666653 4456666666677887777654333222 22334789999999999888888888875
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.11 E-value=7.4 Score=42.03 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----c--eeE-Eecc----CCcCeEEEEEcCCCCEEEEEeCC------
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-----S--KTI-KLRG----HTDNIRSLLLDSTGRYCLSGSSD------ 280 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-----~--~~~-~l~~----h~~~V~~l~~spdg~~l~sgs~D------ 280 (764)
....+++.++| |++++.....++.|.... + .+. .+.. +......++|.|||.+.++-+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 45778888888 444444444445455321 1 121 1222 13447789999999876654421
Q ss_pred -------------CcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec
Q 046871 281 -------------SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 281 -------------g~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs 320 (764)
|.|.-+|...++. ..+...-...+.++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555544432 22222223457889998888776543
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=91.07 E-value=7.5 Score=43.67 Aligned_cols=137 Identities=8% Similarity=-0.005 Sum_probs=64.3
Q ss_pred CCEEEEEeCCC-----eEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeee--EEE
Q 046871 229 GNLLVSGGTEK-----VVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD--SMIRLWDLGQQRCI--HSY 297 (764)
Q Consensus 229 g~~l~sgs~dg-----~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D--g~I~iwdl~~~~~~--~~l 297 (764)
+.++++|+.++ .+..||..+++-.. .+.........+ .-++...+.|+.+ ..+..||..+++-. ..+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 45667777543 57788988764322 121111112222 2356666777754 35778887654322 122
Q ss_pred eeecCceEEEEEcCCCCEEEEecCCC---cEEEEeCCCCeEEEEee--cCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 298 AVHTDSVWALASTPTFSHVYSGGRDL---SLYLTDLATRESLLLCT--GEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 298 ~~h~~~V~~l~~spd~~~l~sgs~Dg---~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
....... +++ .-+++..+.||.++ .+..||.++.+=..... ....-.+++...+.|++.+ |.+.+||..+
T Consensus 350 ~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS 424 (480)
T ss_pred CCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence 1111111 112 22566667777553 46678876654322111 1111123333334455544 3455666544
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=3.9 Score=48.46 Aligned_cols=136 Identities=11% Similarity=-0.017 Sum_probs=86.3
Q ss_pred CcEEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCcee-----EEecc------CCcCeEEEEEcCCCC-EEEEEeCCCcE
Q 046871 218 ESVYALAMNDSGNLLVS--GGTEKVVRVWDPRTGSKT-----IKLRG------HTDNIRSLLLDSTGR-YCLSGSSDSMI 283 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~s--gs~dg~I~iwd~~~~~~~-----~~l~~------h~~~V~~l~~spdg~-~l~sgs~Dg~I 283 (764)
..|..+...+|+...++ .+.+-.|..||+++-..- .-|.. ......++.|+|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555666667655443 334447889998754221 11111 223456677887543 35677789999
Q ss_pred EEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-----cCCCeEEEEeeCCc
Q 046871 284 RLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-----GEHPILQLALHDDN 354 (764)
Q Consensus 284 ~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~~l~~spd~ 354 (764)
++..+.......+--......++++|+|.|+.++.|-..|++.-|...-. ....+. ....|.+|+|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecce
Confidence 99877543322221124556899999999999999999999998875432 112111 25789999998877
No 432
>PRK10115 protease 2; Provisional
Probab=90.85 E-value=40 Score=39.78 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=57.0
Q ss_pred CeeEEEeecccccCCCcEEEEEe-----CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE-EEEeCC-----
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGS-----RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL-VSCSSD----- 104 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs-----~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l-~s~s~D----- 104 (764)
.+..+.+ |||+++|+-+. ....|++-|+.++.. ....+.+ .. ..++|.+|+ .| ++...+
T Consensus 128 ~l~~~~~-----Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAI-----TPDNTIMALAEDFLSRRQYGIRFRNLETGNW-YPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEE-----CCCCCEEEEEecCCCcEEEEEEEEECCCCCC-CCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCC
Confidence 3445555 89999888653 234588889887421 1122222 11 458999886 34 443322
Q ss_pred CcEEEecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeC---CCeEEEEeCC
Q 046871 105 TTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGL---GAEVFIWDIE 157 (764)
Q Consensus 105 g~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~---dg~I~iwdl~ 157 (764)
..|+.+++.... +....+........-..+.+.++.+++..+. ++.+.+++..
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 357777774331 2222333222223322233246665544433 3467787754
No 433
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.73 E-value=29 Score=37.90 Aligned_cols=281 Identities=10% Similarity=0.055 Sum_probs=139.4
Q ss_pred eeEEEeecccc-cCCCcEEEEEeCCCcEEEEeCCCCCCccceee-c-ccccceeEEEEe---CC--CeEEEEeCCCcEEE
Q 046871 38 INCLAVLKSSV-SNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-E-SHVDWVNDAVLV---GD--NTLVSCSSDTTLKT 109 (764)
Q Consensus 38 V~~l~~~~~~~-S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~-~h~~~V~~v~~s---~d--~~l~s~s~Dg~V~v 109 (764)
..|+++.+..- ..+...|++||..|.++|++......+....+ + .-..+|..+..- +. ...++.-.-..+.|
T Consensus 22 ~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 22 QGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 35666544321 23456899999999999999865432221111 1 124567766543 21 23333345566777
Q ss_pred ecCCCC-C-------eeeeeccccCC--ceEEEEEec----CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 110 WNCSSD-G-------TCIRTLRQHSD--YVTCLAAAE----KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 110 Wd~~~~-~-------~~~~~l~~h~~--~V~~l~~~p----~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
|.+... + -.+..+..|.- ....+++-| .+.+++.+-+.||.+.+++-+...-....
T Consensus 102 Y~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l---------- 171 (418)
T PF14727_consen 102 YSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL---------- 171 (418)
T ss_pred EEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc----------
Confidence 775221 1 12222333331 222333322 22578899999999999997752100000
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT------- 248 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~------- 248 (764)
...-..+ .++|.+.-+.|++++.+..|..|....
T Consensus 172 ------------------------------------p~~llPg---Pl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~ 212 (418)
T PF14727_consen 172 ------------------------------------PDFLLPG---PLCYCPRTDSFVTASSSWTLECYKYQDLASASEA 212 (418)
T ss_pred ------------------------------------CCCCCCc---CeEEeecCCEEEEecCceeEEEecHHHhhhcccc
Confidence 0011122 355666667788887777777775421
Q ss_pred -------------Cce---eEEeccCCcCeEEE---EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEE-
Q 046871 249 -------------GSK---TIKLRGHTDNIRSL---LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALA- 308 (764)
Q Consensus 249 -------------~~~---~~~l~~h~~~V~~l---~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~- 308 (764)
++. ..++. -...+..| .++.....+++-+ ..++.+.+. +|......+ ......+++
T Consensus 213 ~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~ 288 (418)
T PF14727_consen 213 SSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKR-LDYNPSCFCP 288 (418)
T ss_pred ccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEe-cCCceeeEEE
Confidence 000 01111 01122233 2322222333332 344555554 343333322 222222222
Q ss_pred E------cCCC-CEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeC----Cc-eEEEeCCCcEEEeeCCCCC
Q 046871 309 S------TPTF-SHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHD----DN-IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 309 ~------spd~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~sp----d~-l~~~s~dg~I~iwd~~~~~ 373 (764)
| .++. ..++.++.++++.||.- .+.+...+......++.... +| |++-+.+|.+.+-=+-+..
T Consensus 289 Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 289 YRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 1 1221 24778888999998863 33344333333333444432 44 7778889998887665543
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=90.56 E-value=12 Score=41.93 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=49.3
Q ss_pred CCcEEEEEeCCC-----cEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCC--CcEEEecCCCCC-eeeeec
Q 046871 51 GVDYLFTGSRDG-----TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSD--TTLKTWNCSSDG-TCIRTL 122 (764)
Q Consensus 51 d~~~L~sgs~Dg-----~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~D--g~V~vWd~~~~~-~~~~~l 122 (764)
++.+++.||.++ .+..||..++....+..+....... +++...+...+.|+.+ .++..||...+. ..+..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455667777543 4667887764433333333222222 2222333355666653 357778853321 122222
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCC---eEEEEeCCC
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGA---EVFIWDIEA 158 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg---~I~iwdl~~ 158 (764)
...... .+++.. ++.+.+.||.++ .+..||..+
T Consensus 350 ~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 350 LKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 211111 222332 477777877653 355666554
No 435
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.32 E-value=8.1 Score=42.83 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=87.0
Q ss_pred CCcEEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC----CEEEEEeCCCcEEEEeCC
Q 046871 217 KESVYALAMNDSGNLLV-SGG--TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG----RYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~-sgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg----~~l~sgs~Dg~I~iwdl~ 289 (764)
-.++..++|. ||+.++ +.- .+|.+++=| .+.+.+|. .|..+.|.|-+ ..+++......|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3568899997 455444 321 233333322 23344443 48899999843 356666778899999874
Q ss_pred -----CCeeeEEEeeec-Cc----eEEEEEcCCCCEEEEecCCCcEEEEeCC--CCeEEEEeecCCCeEEEEeeCCc--e
Q 046871 290 -----QQRCIHSYAVHT-DS----VWALASTPTFSHVYSGGRDLSLYLTDLA--TRESLLLCTGEHPILQLALHDDN--I 355 (764)
Q Consensus 290 -----~~~~~~~l~~h~-~~----V~~l~~spd~~~l~sgs~Dg~I~iwd~~--~~~~~~~~~~~~~V~~l~~spd~--l 355 (764)
..+.+..-..+- .+ -....|+|....|+.-.....=.++++. +.+...-+...+-|.|.+|..|| |
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 223322222111 11 2456799998888765544443455554 33444456678889999999999 4
Q ss_pred EEEeC-CCcEEEeeCCC
Q 046871 356 WVATT-DSSVHRWPAEG 371 (764)
Q Consensus 356 ~~~s~-dg~I~iwd~~~ 371 (764)
++|-. .=.-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 44433 33467888654
No 436
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.06 E-value=32 Score=37.41 Aligned_cols=107 Identities=9% Similarity=-0.016 Sum_probs=63.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEecc--CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS-----KTIKLRG--HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~-----~~~~l~~--h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
...++++.+.+++.+++++ ..|.+. +....++ ....... ....+.++.|.+++..+++| ..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 4568899999998877766 556543 3334443 2222221 12358889998887765555 677666553 3
Q ss_pred CCeeeEEEe---eecCceEEEEEcCCCCEEEEecCCCcEEEE
Q 046871 290 QQRCIHSYA---VHTDSVWALASTPTFSHVYSGGRDLSLYLT 328 (764)
Q Consensus 290 ~~~~~~~l~---~h~~~V~~l~~spd~~~l~sgs~Dg~I~iw 328 (764)
.++.-.... .-....+.+.|.++++-+++| .+|.|..|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 343322222 223567899987776655554 57776654
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.47 E-value=32 Score=36.51 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=38.5
Q ss_pred CceEEEEEcC-------CCCEEEEecCCCcEEEEeCCCCeEEEE----eec-CCCeEEEEeeCCc-eEEEeC-CCcEE
Q 046871 302 DSVWALASTP-------TFSHVYSGGRDLSLYLTDLATRESLLL----CTG-EHPILQLALHDDN-IWVATT-DSSVH 365 (764)
Q Consensus 302 ~~V~~l~~sp-------d~~~l~sgs~Dg~I~iwd~~~~~~~~~----~~~-~~~V~~l~~spd~-l~~~s~-dg~I~ 365 (764)
..+..+.|-. .+.+|++.-..+.|....+..+..+.. +.. ..++..+++.||| |++++. +|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4566677643 445666666667888888765533221 112 3379999999999 776655 67664
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.38 E-value=28 Score=35.72 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=125.6
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCC-----CCccceeecc-----cccceeEEEEeCC-------------CeEEEEeCCC
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADD-----VGSCSATFES-----HVDWVNDAVLVGD-------------NTLVSCSSDT 105 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~-----~~~~~~~l~~-----h~~~V~~v~~s~d-------------~~l~s~s~Dg 105 (764)
+|.+.+-++...-+...+||.+.. ...++.++.. .....+.+.|+.. ..++.+++||
T Consensus 31 ~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdG 110 (336)
T TIGR03118 31 RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDG 110 (336)
T ss_pred cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCc
Confidence 788877777777889999998721 1222333331 1235666777632 1468899999
Q ss_pred cEEEecCCCCCe----eeeecccc-CCce-EEEEEec-CCCcEEEEE-eCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 106 TLKTWNCSSDGT----CIRTLRQH-SDYV-TCLAAAE-KNSNIVASG-GLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 106 ~V~vWd~~~~~~----~~~~l~~h-~~~V-~~l~~~p-~~~~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
+|.-|....... ....+... ...| +.+++.. ..+++|+.+ -..++|.++|-.-..... .....+.
T Consensus 111 TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g~F~DP----- 183 (336)
T TIGR03118 111 TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PGSFIDP----- 183 (336)
T ss_pred eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CCCccCC-----
Confidence 999999532222 11122111 1222 3444442 234555544 356889998865321110 0000000
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceecc--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK--GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
.++. +..+.... +..--|+-..-.++++.=+.|..-|.|-+||+ .|+.++++
T Consensus 184 -----~iPa--------------------gyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~ 237 (336)
T TIGR03118 184 -----ALPA--------------------GYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRV 237 (336)
T ss_pred -----CCCC--------------------CCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEe
Confidence 0000 00000000 01111222222334444455556689999997 57777777
Q ss_pred c--cCCcCeEEEEEcC------CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec------CceEEEEEcC
Q 046871 256 R--GHTDNIRSLLLDS------TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT------DSVWALASTP 311 (764)
Q Consensus 256 ~--~h~~~V~~l~~sp------dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~------~~V~~l~~sp 311 (764)
. +.-..-..|+..| .|.+|+---.||+|..||..+++.+..+.... +..|.|+|..
T Consensus 238 as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 238 ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4 2223445666655 46677766779999999999999888877544 3468888854
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=65 Score=39.64 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=43.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~ 293 (764)
+...+.+..+..... ++.+...+.+-+|+.........+.. .....++++..++++..||.+..||...++.
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCC-cceeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 334444554443333 33444556677776544433333321 1111288899999999999999999988755
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.12 E-value=8.4 Score=34.28 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=72.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--------eeeEEEeeecCceEEEEEcC-----CCCEEEEecCCCcEEEEeCC
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQ--------RCIHSYAVHTDSVWALASTP-----TFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~--------~~~~~l~~h~~~V~~l~~sp-----d~~~l~sgs~Dg~I~iwd~~ 331 (764)
-.|......|++++.-|.|.|++.... ..+..+. -...|++|+-.+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345555567888888899999987532 2334444 455677776533 345566665 5679999998
Q ss_pred CCeEEEEeecCCCeEEEEeeC-----CceEEEeCCCcEEEeeCCCCC
Q 046871 332 TRESLLLCTGEHPILQLALHD-----DNIWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 332 ~~~~~~~~~~~~~V~~l~~sp-----d~l~~~s~dg~I~iwd~~~~~ 373 (764)
....+......+.|.++.+-. ..++..+.+.+|.-||.+..+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 877766666677788887732 227778888888888876543
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.84 E-value=8 Score=44.18 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=72.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCcCeEEEEEc--CCCCEEEEEeCCCcEEEEeCC---------C
Q 046871 223 LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR-GHTDNIRSLLLD--STGRYCLSGSSDSMIRLWDLG---------Q 290 (764)
Q Consensus 223 l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~l~sgs~Dg~I~iwdl~---------~ 290 (764)
+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |||+.+++.+..+.|.+|.-. +
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3333345555555556789999999887544322 357889999885 688998888899999998531 1
Q ss_pred CeeeEEE--eeec-CceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 291 QRCIHSY--AVHT-DSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 291 ~~~~~~l--~~h~-~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
...+..+ ..|+ .+|.+..|.++|.+++.+| +.+.|+|-
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2233333 3344 5789999999998776554 56788764
No 442
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=5.9 Score=47.06 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=100.6
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCC--------CCCc------cceeeccc-ccceeEEEEeCCC---eEEEEeCCCcEEEe
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLAD--------DVGS------CSATFESH-VDWVNDAVLVGDN---TLVSCSSDTTLKTW 110 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~--------~~~~------~~~~l~~h-~~~V~~v~~s~d~---~l~s~s~Dg~V~vW 110 (764)
++.-..++.++..+.+.++-..+ +... ...++.-| .-.+..+...+|. .++..+.+-.|..+
T Consensus 50 sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~f 129 (1405)
T KOG3630|consen 50 SNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSF 129 (1405)
T ss_pred ccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceEEEE
Confidence 45555666666666555554322 1000 11233333 2345555555664 33444455568889
Q ss_pred cCCCCCe----eeeecc------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 111 NCSSDGT----CIRTLR------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 111 d~~~~~~----~~~~l~------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
|+..-.. ...-+. .......++.|.|.-....+.+..|+.|++..+......
T Consensus 130 D~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~------------------ 191 (1405)
T KOG3630|consen 130 DLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN------------------ 191 (1405)
T ss_pred ehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhh------------------
Confidence 9732110 111111 122345677787544455666777777777766431100
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc---
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG--- 257 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~--- 257 (764)
..........++++|+|.|.+++.|-..|++.-|-.. ++....+.+
T Consensus 192 ------------------------------v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 192 ------------------------------VTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV 240 (1405)
T ss_pred ------------------------------hcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc
Confidence 0011235568999999999999999999999988764 333333221
Q ss_pred -CCcCeEEEEEcCCCCEEEE
Q 046871 258 -HTDNIRSLLLDSTGRYCLS 276 (764)
Q Consensus 258 -h~~~V~~l~~spdg~~l~s 276 (764)
....|.+|+|-....++++
T Consensus 241 ~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCCcceeEEEEecceeEEEE
Confidence 1367899999876666654
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=18 Score=34.83 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeeEEEeeecCce
Q 046871 228 SGNLLVSGGT--EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLWDLGQQRCIHSYAVHTDSV 304 (764)
Q Consensus 228 ~g~~l~sgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V 304 (764)
+|.++.+.+. ...|++||+.+++.+..-.-..+.+..=-...-|.++. ..-.+|.-..+|.++.+++..+.. .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4556666554 34799999999988776543222221111111133332 233588889999999888887763 4455
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE---eecCCCe---EEEEeeCCceEEE-eCCCcEEEeeCCCCCCcee
Q 046871 305 WALASTPTFSHVYSGGRDLSLYLTDLATRESLLL---CTGEHPI---LQLALHDDNIWVA-TTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 305 ~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~V---~~l~~spd~l~~~-s~dg~I~iwd~~~~~~~~~ 377 (764)
|.++.. +..|+.++...+++.-|.++...... .....|| +.+.|-...+++- =.+..|-..+.++++....
T Consensus 134 WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 134 WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 777654 44466666566777777655433322 2223333 3344443333322 1234455555566655544
Q ss_pred ee
Q 046871 378 FQ 379 (764)
Q Consensus 378 ~~ 379 (764)
+.
T Consensus 212 id 213 (262)
T COG3823 212 ID 213 (262)
T ss_pred EE
Confidence 43
No 444
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.55 E-value=14 Score=40.78 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCeeeEEE-eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLG-------QQRCIHSY-AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg~I~iwdl~-------~~~~~~~l-~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
..+..+...|.-+++ .|..+.||+.. .+.....+ .++...+.++ ++.....|.|+.|+--..
T Consensus 29 ~~~gi~~e~g~Aw~~--~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~ 98 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIV--VDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISH 98 (422)
T ss_dssp -EEEEE-TTSEEEEE--ETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-
T ss_pred eEEEEEcccCEEEEE--ECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchh
Confidence 344444444433333 47889999983 33333334 3333333333 334455677888864221
Q ss_pred e-E------EE--------EeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccccccccc
Q 046871 334 E-S------LL--------LCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSL 398 (764)
Q Consensus 334 ~-~------~~--------~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 398 (764)
. . +. ....+..+.-....+.++++++..|.|.....+.......+....... .+-.+......+
T Consensus 99 ~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~-~~~~i~~~~~~~ 177 (422)
T PF08801_consen 99 LLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSG-RCSKINHTSSSI 177 (422)
T ss_dssp TT--EEEE------------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT----------------
T ss_pred hhhcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcC-CccccccccCce
Confidence 1 1 10 111222223334566667778888887777666533332222100000 000000000000
Q ss_pred CCCCCcccCCCCCCccccC-CCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 399 EGSTPVSSRFKEPNFTIPG-IPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~g-~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
-+. + .+. ... ..+|.+++..+.++.|.+.+.+|.|.+||+..
T Consensus 178 ~~~-----~--~p~--~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 178 FSS-----L--LPS--FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -----------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ecc-----c--cCC--cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 000 0 000 111 33499999999999999999999999999974
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.99 E-value=0.13 Score=58.56 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=64.5
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc-----cccceeEEEEeC---CC-eEEEEeC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES-----HVDWVNDAVLVG---DN-TLVSCSS 103 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~-----h~~~V~~v~~s~---d~-~l~s~s~ 103 (764)
|..++|-.|+|-... +|.+. -.-|.+.+||++--+++..-.+.. -...+.-+.|+| +. ++..+-.
T Consensus 130 gf~G~v~dl~fah~~-~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTK-CPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred cCCCCcccccccccC-ChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 445677777773211 12222 223778899987544444333332 234456667765 33 6667777
Q ss_pred CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEA 158 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~ 158 (764)
+++|++.++.. .....+..|...+..++|...+-..++.-+-||++..|-+..
T Consensus 204 ~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 204 GGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred CCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 88888877632 233566678888777776532223333344444444444443
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.84 E-value=20 Score=42.15 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec--------------------cCCcCeEEEEEcCC---CCE
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR--------------------GHTDNIRSLLLDST---GRY 273 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~--------------------~h~~~V~~l~~spd---g~~ 273 (764)
.-.|..+.++++|.+++..|..|.+.+.=.+..-.-..+. .+...|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4578999999999999998887754443222110001111 22335556666653 355
Q ss_pred EEEEeCCCcEEEEeC
Q 046871 274 CLSGSSDSMIRLWDL 288 (764)
Q Consensus 274 l~sgs~Dg~I~iwdl 288 (764)
|++-++|+++|+||+
T Consensus 164 l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDI 178 (717)
T ss_pred EEEEecCCEEEEEec
Confidence 555556666666665
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.78 E-value=34 Score=34.78 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=102.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc--CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG--HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-- 292 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-- 292 (764)
.+.+..+.++ +++...+..+.-++|.|+.+......+.. -.+--.++..+ |++..++..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCc
Confidence 3445566676 66788888888899999987654333221 11334555555 8898888867667788986543
Q ss_pred -eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee---cCCCeEEEEeeCCceEEEeCCCcEEEee
Q 046871 293 -CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT---GEHPILQLALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 293 -~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~---~~~~V~~l~~spd~l~~~s~dg~I~iwd 368 (764)
....+......-+.++.+ |++-+.+..|+-+.+-|+........+. ....+.++..+++..+..-.+-.+.+-|
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd 239 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVD 239 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEe
Confidence 333344344444666665 6678888899999999998765444333 3447889999999855555555666777
Q ss_pred CCCCCCceee
Q 046871 369 AEGRNPQKVF 378 (764)
Q Consensus 369 ~~~~~~~~~~ 378 (764)
..+.+....+
T Consensus 240 ~s~~ssp~~~ 249 (370)
T COG5276 240 VSGPSSPTVF 249 (370)
T ss_pred cCCCCCceEe
Confidence 7665544444
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.68 E-value=1.7 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.7
Q ss_pred CceEEEEEecCCC--cEEEEEeCCCeEEEEeCCC
Q 046871 127 DYVTCLAAAEKNS--NIVASGGLGAEVFIWDIEA 158 (764)
Q Consensus 127 ~~V~~l~~~p~~~--~~lasg~~dg~I~iwdl~~ 158 (764)
+.|.++.|+|..+ ++|+.+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999997666 7999998899999999985
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.65 E-value=2.5 Score=41.74 Aligned_cols=67 Identities=12% Similarity=0.008 Sum_probs=49.7
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCeEEEEe---------------ecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCC
Q 046871 309 STPTFSHVYSGGRDLSLYLTDLATRESLLLC---------------TGEHPILQLALHDDN-IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~---------------~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~ 372 (764)
+..++.++++.+.+|.+++||+.+++.+... .....|..+.++.+| .++.-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 3446788999999999999999988765432 234568888899888 445556788899988765
Q ss_pred CCc
Q 046871 373 NPQ 375 (764)
Q Consensus 373 ~~~ 375 (764)
.-.
T Consensus 98 ~W~ 100 (219)
T PF07569_consen 98 CWI 100 (219)
T ss_pred eeE
Confidence 443
No 450
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.56 E-value=3.6 Score=49.60 Aligned_cols=159 Identities=15% Similarity=0.210 Sum_probs=90.5
Q ss_pred eCCCcEEEEeCCCCeeeEEEeeecCceEEEEE--------cCCCCEEEEecCCCcEEEEeCC----CCeEE-----EEe-
Q 046871 278 SSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS--------TPTFSHVYSGGRDLSLYLTDLA----TRESL-----LLC- 339 (764)
Q Consensus 278 s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~--------spd~~~l~sgs~Dg~I~iwd~~----~~~~~-----~~~- 339 (764)
+.|+.+.+|+..++.....+.+-...|..+.. -|.=+++...+.--.|.++-+. ++..- ..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35889999999998777778777767766653 2233444444444556665432 22111 111
Q ss_pred ecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCC
Q 046871 340 TGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGI 418 (764)
Q Consensus 340 ~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~ 418 (764)
..+..|.|+....+| ++.++.|| .+|.+.-.....-+..-.. .+..+. ...+..++++..-+ ....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~----Kiclt~----s~ls~lvPs~~~~~---~~~~ 242 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCR----KICLTK----SVLSSLVPSLLSVP---GSSK 242 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccc----cccCch----hHHHHhhhhhhcCC---CCCC
Confidence 125568899978888 99999999 5554421111000000000 000000 00001111111111 2234
Q ss_pred CCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 419 PGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 419 ~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
.+|.++.+.+.+..|.+-++.|+|++||+..
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5799999999999999999999999999986
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.86 E-value=49 Score=35.68 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-C
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK----TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG-Q 290 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~-~ 290 (764)
..++|.++.|++|.+.||+--.+..|.+++....+. ..+.+..+..|...+|+.. .-++..+..| +-+|-.. .
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 466899999999999999999999999998743322 2223344557889999865 4566555444 5666543 2
Q ss_pred CeeeEEEeeecCceEEEEEcCCCCEEEEec--CCCcEEEEeCCCCe
Q 046871 291 QRCIHSYAVHTDSVWALASTPTFSHVYSGG--RDLSLYLTDLATRE 334 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~l~~spd~~~l~sgs--~Dg~I~iwd~~~~~ 334 (764)
.+.++..+.|.-.|.--.|.++-+.+.-++ ..+++.=+.++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 334455566777787788888776654333 33344434444443
No 452
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.69 E-value=83 Score=38.65 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=25.6
Q ss_pred CCCCCCCCeeEEEeecccccCCCc-EE----EEEeCCCcEEEEeCCC
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVD-YL----FTGSRDGTLKRWSLAD 71 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~-~L----~sgs~Dg~I~iWd~~~ 71 (764)
...||+..|.|..+...+ ++. +| ++.+-||++.|=|.+-
T Consensus 342 mgdG~qR~veC~~C~G~a---~~~~L~aPvala~a~DGSl~VGDfNy 385 (1899)
T KOG4659|consen 342 MGDGHQRDVECPKCEGKA---DSISLFAPVALAYAPDGSLIVGDFNY 385 (1899)
T ss_pred ccCcccccccCCCCCCcc---ccceeeceeeEEEcCCCcEEEccchh
Confidence 345999999998875432 222 22 2456799999887653
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.67 E-value=14 Score=40.06 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=89.1
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-------EEEEEeCCCcEEEEeCCC-CeeeEEE
Q 046871 227 DSGNLLV-SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-------YCLSGSSDSMIRLWDLGQ-QRCIHSY 297 (764)
Q Consensus 227 p~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-------~l~sgs~Dg~I~iwdl~~-~~~~~~l 297 (764)
.+.++|+ .|+....++-.|+..|+.+..+..|.+. -+.|.|+.+ .-++|-++..|.-.|.+. |..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444444 4666677888899999999999877765 467777532 223455566665566543 3333222
Q ss_pred eeecCceEEEEEc----CCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCC
Q 046871 298 AVHTDSVWALAST----PTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAE 370 (764)
Q Consensus 298 ~~h~~~V~~l~~s----pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~ 370 (764)
. ..+-++.-.|+ ....+++.+|..|.|++||--.......++ ....|-.+..+.+| .+.++....+-+-|+.
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2 11112222222 244689999999999999954433333333 46678899999999 6777777888888775
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.66 E-value=28 Score=40.40 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=72.6
Q ss_pred CcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCC-------C-------------ceeEEeccCCcCeEEEEEc--CCCCE
Q 046871 218 ESVYALAMND--SGNLLVSGGTEKVVRVWDPRT-------G-------------SKTIKLRGHTDNIRSLLLD--STGRY 273 (764)
Q Consensus 218 ~~V~~l~~sp--~g~~l~sgs~dg~I~iwd~~~-------~-------------~~~~~l~~h~~~V~~l~~s--pdg~~ 273 (764)
..|..|.... +...|+.+..||.|.+|.+++ . ++-..+. -...+..+++. ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 3455554433 556899999999999996521 0 0112222 23467888888 77788
Q ss_pred EEEEeCCCcEEEEeCCC--CeeeE-EEeeecCceEEEEEcCCC---C---EEEEecCCCcEEEEeC
Q 046871 274 CLSGSSDSMIRLWDLGQ--QRCIH-SYAVHTDSVWALASTPTF---S---HVYSGGRDLSLYLTDL 330 (764)
Q Consensus 274 l~sgs~Dg~I~iwdl~~--~~~~~-~l~~h~~~V~~l~~spd~---~---~l~sgs~Dg~I~iwd~ 330 (764)
||+++....|.||-... .+... .-..|...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888875533 11111 111255678899986532 2 7888999999999888
No 455
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.35 E-value=43 Score=34.43 Aligned_cols=113 Identities=10% Similarity=0.096 Sum_probs=69.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCC------CC-ceeEEecc-----CCcCeEEEEEcCCCC------------EE
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPR------TG-SKTIKLRG-----HTDNIRSLLLDSTGR------------YC 274 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~spdg~------------~l 274 (764)
.-+.|+++|.+.+-++...-+...+||.. .. ..+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999988888887778899999986 12 22333331 123567777764322 36
Q ss_pred EEEeCCCcEEEEeCCCCee-----eEEEeee-cCce-EEEEEc--CCCCEEEEec-CCCcEEEEeCC
Q 046871 275 LSGSSDSMIRLWDLGQQRC-----IHSYAVH-TDSV-WALAST--PTFSHVYSGG-RDLSLYLTDLA 331 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~~~-----~~~l~~h-~~~V-~~l~~s--pd~~~l~sgs-~Dg~I~iwd~~ 331 (764)
+.+++||+|.-|...-... ...+... .+.| ..+++. ..+.+|+.+. ..++|.++|-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 7788999999998533222 1222211 2333 344543 3466777655 46889998854
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.17 E-value=3.3 Score=28.77 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.6
Q ss_pred CcEEEEEEcCC-C--CEEEEEeCCCeEEEEeCCCC
Q 046871 218 ESVYALAMNDS-G--NLLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 218 ~~V~~l~~sp~-g--~~l~sgs~dg~I~iwd~~~~ 249 (764)
+.|.++.|+|+ + ++|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999984 4 58888888999999999953
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.06 E-value=22 Score=41.18 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeE------Eec----------------cCCcCeEEEEEcC--CCCEEEEEeCCCcEE
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTI------KLR----------------GHTDNIRSLLLDS--TGRYCLSGSSDSMIR 284 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~------~l~----------------~h~~~V~~l~~sp--dg~~l~sgs~Dg~I~ 284 (764)
.++++++. .+.|.||+++...... .+. .....|+.|.+.. +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56677665 6889999986432211 110 0112355554443 345788999999999
Q ss_pred EEeCCC-------C-------------eeeEEEeeecCceEEEEEc--CCCCEEEEecCCCcEEEEeCCCC--eEE--EE
Q 046871 285 LWDLGQ-------Q-------------RCIHSYAVHTDSVWALAST--PTFSHVYSGGRDLSLYLTDLATR--ESL--LL 338 (764)
Q Consensus 285 iwdl~~-------~-------------~~~~~l~~h~~~V~~l~~s--pd~~~l~sgs~Dg~I~iwd~~~~--~~~--~~ 338 (764)
+|.+++ . ++...+. -..++|+++++ ...++||.++....|.||-+... +.. ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997521 1 0112222 23579999998 88888998888888887765432 111 12
Q ss_pred eecCCCeEEEEeeCCc--------eEEEeCCCcEEEeeC
Q 046871 339 CTGEHPILQLALHDDN--------IWVATTDSSVHRWPA 369 (764)
Q Consensus 339 ~~~~~~V~~l~~spd~--------l~~~s~dg~I~iwd~ 369 (764)
..+.+.|-+|+|-++. +++++-.|.+-+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3356778889886543 445666899888877
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.02 E-value=10 Score=41.28 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwd 287 (764)
.|..+..++.|..++.++.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 467788899999999888999776654
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.89 E-value=36 Score=36.65 Aligned_cols=102 Identities=8% Similarity=0.096 Sum_probs=73.5
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCcc--ceeecccccceeEEEEeCCCeEEEEeCCCcEEEec
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSC--SATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~--~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd 111 (764)
-+++|.+|.| |+|.+.||+--.|.+|.+.+...++.+. ..+.+..+..|...+|+.+..++..+..| +-+|.
T Consensus 65 d~G~I~SIkF-----SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 65 DKGEIKSIKF-----SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQ 138 (657)
T ss_pred CCCceeEEEe-----ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEE
Confidence 3459999999 8999999999999999999985433322 33334456678889998776555555444 67776
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEE
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIV 142 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~l 142 (764)
+....+.++..+.|.-.|+-..|+ ++.+.+
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc-~et~v~ 168 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYC-PETAVI 168 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEc-cccceE
Confidence 655566677778888888888888 444433
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.50 E-value=4.3 Score=40.12 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=43.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE-------e-------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 267 LDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY-------A-------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 267 ~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l-------~-------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
+..++.+|++.+.+|.+++||+.+++++..- . .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456889999999999999999988765432 1 1334566666666666555544 3566666654
No 461
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=85.25 E-value=3.5 Score=33.74 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=55.8
Q ss_pred ceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCcc
Q 046871 637 KCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLK 716 (764)
Q Consensus 637 k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (764)
||...|+|--+ .|.+++.+..-+.-=++..|+.|+..+|..+
T Consensus 1 KV~v~fk~iG~--aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~------------------------------------ 42 (87)
T PF04110_consen 1 KVTVRFKAIGS--APILKQKKFKISASQTFATVIAFLRKKLKLK------------------------------------ 42 (87)
T ss_dssp EEEEEEEEETT------S--EEEEETTSBTHHHHHHHHHHCT--------------------------------------
T ss_pred CEEEEEEecCC--CccccCcEEEECCCCchHHHHHHHHHHhCCc------------------------------------
Confidence 67788888764 5677777766555568999999999999532
Q ss_pred cccCCCCcEEEEeCCEecC-CCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 717 SWQKLRPSIEILCNNQVLS-PDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 717 ~~~~~~~~~el~c~~~~~~-~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
..+.|=||||..-.| ||-+++.+=..+ +.++.|+++|-.-+
T Consensus 43 ----~~~slFlYin~sFaPspDe~vg~L~~~f-~~~~~Liv~Ys~t~ 84 (87)
T PF04110_consen 43 ----PSDSLFLYINNSFAPSPDETVGDLYRCF-GTNGELIVSYSKTP 84 (87)
T ss_dssp ------SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS
T ss_pred ----cCCeEEEEEcCccCCCchhHHHHHHHHh-CCCCEEEEEEeccc
Confidence 134577999998876 899999987644 59999999997654
No 462
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.12 E-value=45 Score=37.13 Aligned_cols=259 Identities=14% Similarity=0.078 Sum_probs=123.7
Q ss_pred ccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccc-cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 046871 84 VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQ-HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAP 162 (764)
Q Consensus 84 ~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~-h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~ 162 (764)
...|..+.+.-+|.+..|+.||- ..+|. ..++.++.-.. ....|..+... -...+..|+.+| |++.+.+.....
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL-~~fd~-~~gkalql~s~~~dk~I~al~~d--~qg~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGL-SYFDA-GRGKALQLASPPLDKAINALIAD--VQGRLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccCcEEEecCCcc-eEEcc-ccceEEEcCCCcchhhHHHHHHH--hcCcEEEEeccc-eEEEchhhcccc
Confidence 44677788877788888888885 44553 33444433222 22455555444 244566777777 777776652111
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc----------cceeccC--CCCcEEEEEEcCCCC
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY----------VPIAAKG--HKESVYALAMNDSGN 230 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~----------~~~~~~~--~~~~V~~l~~sp~g~ 230 (764)
..+...+...+.....+..-.+|.....+. .....+. .-+.|.++....+|+
T Consensus 239 ----------------n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs 302 (671)
T COG3292 239 ----------------NWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS 302 (671)
T ss_pred ----------------ccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC
Confidence 112222222233333333333333222211 1111111 123455666666665
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCc-CeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-cCceEE
Q 046871 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTD-NIRSLLLDS--TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-TDSVWA 306 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~sp--dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-~~~V~~ 306 (764)
|-+++.++.+++-+.. ......+....+ .+...+.+| .+..+--..+-|.+.+-+-.++..+.+...- ...|+.
T Consensus 303 -LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~ 380 (671)
T COG3292 303 -LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITT 380 (671)
T ss_pred -EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccch
Confidence 5666666666654432 222111111111 111111111 1222222222334444444455554443221 234666
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCC-CeEEEEee--cCCCeEEEEeeCCc-eEEEeCCCcEEE
Q 046871 307 LASTPTFSHVYSGGRDLSLYLTDLAT-RESLLLCT--GEHPILQLALHDDN-IWVATTDSSVHR 366 (764)
Q Consensus 307 l~~spd~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~--~~~~V~~l~~spd~-l~~~s~dg~I~i 366 (764)
+++..++ .+-.|+...-+..|+..+ +..+.... ...+|..+.-.|++ ++.++.+|.+++
T Consensus 381 ~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 381 TLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred hhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 6666644 344555554455566555 32222222 24578888888888 999999987654
No 463
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.05 E-value=64 Score=35.28 Aligned_cols=151 Identities=10% Similarity=0.079 Sum_probs=86.2
Q ss_pred eEEEEeCCCcEEEecCCCCCee---eeeccccCCceEEEEEec---C-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTC---IRTLRQHSDYVTCLAAAE---K-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 169 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~---~~~l~~h~~~V~~l~~~p---~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~ 169 (764)
.++.||..|.++||+....+.. +..-..-..+|..+..-. . +...||+ =.-+.+.+|.+........
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~----- 112 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE----- 112 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc-----
Confidence 8999999999999997443311 111122346787776542 1 2334444 3456788888732100000
Q ss_pred cCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC--CCcEEEEEEcC----C-CCEEEEEeCCCeEE
Q 046871 170 EDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH--KESVYALAMND----S-GNLLVSGGTEKVVR 242 (764)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~V~~l~~sp----~-g~~l~sgs~dg~I~ 242 (764)
.+. ...+.....| ....+.+++-| . ..+|.+-+.||.+.
T Consensus 113 ----------~g~------------------------~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~ 158 (418)
T PF14727_consen 113 ----------HGN------------------------QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLS 158 (418)
T ss_pred ----------cCc------------------------EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEE
Confidence 000 0011111122 23344455433 1 35788889999999
Q ss_pred EEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046871 243 VWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 243 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl 288 (764)
+|+-+.......+.. ---...++|.+.-..|++++.+..+..|..
T Consensus 159 ~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 159 FFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 999765443344432 222345778888888999998888888864
No 464
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.80 E-value=47 Score=33.51 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE---E
Q 046871 221 YALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS---Y 297 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~---l 297 (764)
+.++-.|||..-+++...+.|--.|.++|+....--+....-..|...|||..-++-+.. -|.-.|-++.+...- .
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc
Q ss_pred eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCc
Q 046871 298 AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 298 ~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~ 375 (764)
+.-........|++.|.+-+++...-.=++=-.+.--.+........-+.|+..|+| -++.-.++.|-..|...+ ..
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~-~a 222 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG-HA 222 (353)
T ss_pred ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC-Cc
Q ss_pred eeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 376 KVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 376 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
..+...... +.+...+-.++.|+.-+|....|.+..+|
T Consensus 223 ev~p~P~~~---------------------------------~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 223 EVVPQPNAL---------------------------------KAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred ceecCCCcc---------------------------------cccccccccCccCcEEEeccCCceeeEeC
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.42 E-value=30 Score=30.93 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=67.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCc--------eeEEeccCCcCeEEEEEcC-----CCCEEEEEeCCCcEEEEeCCC
Q 046871 224 AMNDSGNLLVSGGTEKVVRVWDPRTGS--------KTIKLRGHTDNIRSLLLDS-----TGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 224 ~~sp~g~~l~sgs~dg~I~iwd~~~~~--------~~~~l~~h~~~V~~l~~sp-----dg~~l~sgs~Dg~I~iwdl~~ 290 (764)
.|......|++++.-|.|.|++..... .+..|. -...|++|+-.+ +...|+.|+ ...|..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 455555678888889999999876432 333333 456778876544 234566665 56788999977
Q ss_pred CeeeEEEeeecCceEEEEEc---C-CCCEEEEecCCCcEEEEeCCCCeEEEE
Q 046871 291 QRCIHSYAVHTDSVWALAST---P-TFSHVYSGGRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~l~~s---p-d~~~l~sgs~Dg~I~iwd~~~~~~~~~ 338 (764)
..-+..-. -.+.|+++.+- . +..+++.| .+..|.-+|....+....
T Consensus 83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred Cchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 65544333 33567777762 2 23444444 466777777665555443
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.40 E-value=63 Score=34.68 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=109.5
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEe----CCC---eEEEEeC-C---CcEEEecCCCCCe
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLV----GDN---TLVSCSS-D---TTLKTWNCSSDGT 117 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s----~d~---~l~s~s~-D---g~V~vWd~~~~~~ 117 (764)
+|...+++....++-+.+||++. +.++.+.. +.++.+..- -++ -|+.++. + .+|++|.+.....
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~G---k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDG---KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS----EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred CcccceEEEEeCCCCEEEEcCCC---cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 46777888888999999999984 45565542 233333221 122 2444443 2 4699998753322
Q ss_pred eeeecccc-------CCceEEEEE--ecCCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 118 CIRTLRQH-------SDYVTCLAA--AEKNS-NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 118 ~~~~l~~h-------~~~V~~l~~--~p~~~-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
.+..+... ...+..+++ ++.++ -+++..+.+|.+..|.+......
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g------------------------- 194 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG------------------------- 194 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-------------------------
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-------------------------
Confidence 33333211 123455555 33334 46677888999988887531100
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEEecc--CCc
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-----SKTIKLRG--HTD 260 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-----~~~~~l~~--h~~ 260 (764)
.+ ....++.+. -.+.+-.|........|+.|-++.-|+-|+.+-. +.+....+ ...
T Consensus 195 ---------~v-------~~~lVR~f~-~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~a 257 (381)
T PF02333_consen 195 ---------KV-------SATLVREFK-VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVA 257 (381)
T ss_dssp ---------SE-------EEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S
T ss_pred ---------cE-------eeEEEEEec-CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccccc
Confidence 00 011122222 2447888999988889999999998998887622 22322222 345
Q ss_pred CeEEEEEc--CCCC-EEEEEe-CCCcEEEEeCCC-CeeeEEE
Q 046871 261 NIRSLLLD--STGR-YCLSGS-SDSMIRLWDLGQ-QRCIHSY 297 (764)
Q Consensus 261 ~V~~l~~s--pdg~-~l~sgs-~Dg~I~iwdl~~-~~~~~~l 297 (764)
.|..|++- .+++ ||++.+ .+++..+|+.+. ...+..|
T Consensus 258 DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 258 DVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp -EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 77777774 3443 555444 477899999864 3444444
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.24 E-value=0.11 Score=55.22 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=100.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeeEEEe
Q 046871 220 VYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLWDLGQQRCIHSYA 298 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl~~~~~~~~l~ 298 (764)
.....|-+.+.-++.++.+..+..||- .++.+.... .++....++|+.++..++ .+-..+.+.+||+.+... +++.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 335567776666888888999999994 455554444 455667788888887644 455678899999965321 2221
Q ss_pred ---eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEE
Q 046871 299 ---VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHR 366 (764)
Q Consensus 299 ---~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~i 366 (764)
.|... -+.|++....++.+-..|.+.+++..+.+...... |..+++++++.+.+ .+.++.|..+.+
T Consensus 114 ~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 114 SGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred ccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 12222 26788888889999899999999998877766666 78899999999988 555655554433
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.05 E-value=0.52 Score=50.38 Aligned_cols=235 Identities=11% Similarity=0.084 Sum_probs=133.1
Q ss_pred EEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC
Q 046871 90 AVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168 (764)
Q Consensus 90 v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~ 168 (764)
..|-+.+ .++.++.+..+..||- .++....+. ..+....++|.......++.+-..+.+.+||+.+......
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~--agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL---- 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDK--AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL---- 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhh--hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH----
Confidence 4555654 6888888899999993 344443332 2344557778743333455566778999999986311100
Q ss_pred CcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 046871 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT 248 (764)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~ 248 (764)
..-..+..+. +.|++.+..++.|...|.+.|++..+
T Consensus 113 ------------------------------------------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 113 ------------------------------------------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred ------------------------------------------hccCcchHHH--HhhccCCccccccccccceEEEeccc
Confidence 0000111111 66788888888888999999999988
Q ss_pred CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe--eecCce--EEE---EEcCCCCEEEEecC
Q 046871 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA--VHTDSV--WAL---ASTPTFSHVYSGGR 321 (764)
Q Consensus 249 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~--~h~~~V--~~l---~~spd~~~l~sgs~ 321 (764)
.+.+...-.|...++++++.+.+. .+.++.|..+.+-... ++.....+ +..+.. ..+ .|..-+..+.+.-.
T Consensus 149 sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs 226 (615)
T KOG2247|consen 149 SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS 226 (615)
T ss_pred hhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhhc-cceeeeeeccCccchhhhheeeeeccccccceeeeeee
Confidence 877776666999999999998764 5556666655443321 11111111 100000 011 12222333332211
Q ss_pred CCcEEEE----eCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCcee
Q 046871 322 DLSLYLT----DLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 322 Dg~I~iw----d~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~ 377 (764)
......| ..+....+..-...+-+.|+.|--|| |..+-.-+.|..-.+.+.+....
T Consensus 227 gKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 227 GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred cHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHH
Confidence 1111000 11122222222245678899999997 88787778888777777665543
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.80 E-value=67 Score=34.50 Aligned_cols=141 Identities=15% Similarity=0.211 Sum_probs=84.8
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc----CCCCE--EEEEeC-C---CcEEEEeCC--CCeee
Q 046871 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD----STGRY--CLSGSS-D---SMIRLWDLG--QQRCI 294 (764)
Q Consensus 227 p~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~--l~sgs~-D---g~I~iwdl~--~~~~~ 294 (764)
|...+++....++-+.+||+. |+.+..+.. +.++.+.+- -+|+. |+.++. + .+|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 456688888889999999985 666666642 233333221 13443 445543 2 469999774 333 3
Q ss_pred EEEee-------ecCceEEEEE--cC-CCC-EEEEecCCCcEEEEeCC---CC----eEEEEeecCCCeEEEEeeCCc--
Q 046871 295 HSYAV-------HTDSVWALAS--TP-TFS-HVYSGGRDLSLYLTDLA---TR----ESLLLCTGEHPILQLALHDDN-- 354 (764)
Q Consensus 295 ~~l~~-------h~~~V~~l~~--sp-d~~-~l~sgs~Dg~I~iwd~~---~~----~~~~~~~~~~~V~~l~~spd~-- 354 (764)
..+.. ....++.+|+ ++ ++. +++..+.+|.+..|.+. .+ +.++.+.....+..|+.....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 33321 1123667776 44 454 55577788988888774 23 456677777788888888876
Q ss_pred eEEEeCCCcEEEeeCCC
Q 046871 355 IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~~ 371 (764)
|+++-++--|..|+.+-
T Consensus 222 LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEETTTEEEEEESSC
T ss_pred EEEecCccEEEEEecCC
Confidence 99999998888887763
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.54 E-value=46 Score=32.42 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=62.4
Q ss_pred CEEEEEeCCCeEEEEeCC--CCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC------CcEEEE---eCC--CCeeeE-
Q 046871 230 NLLVSGGTEKVVRVWDPR--TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD------SMIRLW---DLG--QQRCIH- 295 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D------g~I~iw---dl~--~~~~~~- 295 (764)
+.|+.+.....|.+|++. ..+.+..|.. -+.|..+.++..|++|+|-=.+ ..+|+| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999988 3355666664 4889999999999999985332 256665 221 111111
Q ss_pred EEee---------------------ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 296 SYAV---------------------HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 296 ~l~~---------------------h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
.+-+ -..++.+++..|-..-|+.|+ ++++.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1112 123567788777444444444 457888887543
No 471
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.87 E-value=90 Score=35.31 Aligned_cols=253 Identities=14% Similarity=0.119 Sum_probs=119.9
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccc-ccceeEEEEeCCC--eEEEEeCCCcEEEecCC-CCCeeeeeccc
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESH-VDWVNDAVLVGDN--TLVSCSSDTTLKTWNCS-SDGTCIRTLRQ 124 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h-~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~-~~~~~~~~l~~ 124 (764)
..++..++-+..+|.+..-.+...........-+. .....++++..++ .|+.||.-|.=.++.+. ..-..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 46677888899999999887765322111222222 5566788888888 99999876554444432 1223333333
Q ss_pred cCCceEEEEEecC---CCc------EEEEE-e--CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 125 HSDYVTCLAAAEK---NSN------IVASG-G--LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 125 h~~~V~~l~~~p~---~~~------~lasg-~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
.-++|..+++.+. ... .++++ | .+|.+++..-.-. ...
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~--~~~---------------------------- 347 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIG--IEG---------------------------- 347 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBE--EE-----------------------------
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCC--cee----------------------------
Confidence 4468888888521 111 44444 3 4567777643210 000
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC---CCceeEEec--cC---CcCeE
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPR---TGSKTIKLR--GH---TDNIR 263 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~---~~~~~~~l~--~h---~~~V~ 263 (764)
.......+.+ -..++.+.... +..+|+....+.+ +++.+. ..+.+..+. +. ...+.
T Consensus 348 -------------~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~ 412 (504)
T PF10433_consen 348 -------------LELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLA 412 (504)
T ss_dssp --------------EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEE
T ss_pred -------------eeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeE
Confidence 0000001111 23344444332 2456666655443 344432 233332221 11 11222
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC-ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee--
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD-SVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-- 340 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~-~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-- 340 (764)
+-.+. +..++=.+ ...|++.+...++....+....+ .|.+.+.. +.+++.+-.++.+..+.+..........
T Consensus 413 ~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 487 (504)
T PF10433_consen 413 AGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDE 487 (504)
T ss_dssp EEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred EEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecc
Confidence 22222 34444443 34488888877777766654333 34444443 3466666668888888887665543222
Q ss_pred ----cCCCeEEEEeeC
Q 046871 341 ----GEHPILQLALHD 352 (764)
Q Consensus 341 ----~~~~V~~l~~sp 352 (764)
....|.|+...|
T Consensus 488 ~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 488 TILELDNEISCLSIEP 503 (504)
T ss_dssp --EE-SS-EEEEE---
T ss_pred ccccCCCceEEEEeCC
Confidence 466788887766
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.81 E-value=67 Score=33.97 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=61.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCc------EEEEeCCC--C--eeeE-----EEeeecC--------ceEEEEEcCCCCEE
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSM------IRLWDLGQ--Q--RCIH-----SYAVHTD--------SVWALASTPTFSHV 316 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~------I~iwdl~~--~--~~~~-----~l~~h~~--------~V~~l~~spd~~~l 316 (764)
+.+..|.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ -.-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 46777888866666677777777 55555433 1 1111 1111111 23377887888888
Q ss_pred EEecCC------CcEEEEeCCCCeEEEEe----------------ecCCCeEEEEeeCCc--eEEEeCC
Q 046871 317 YSGGRD------LSLYLTDLATRESLLLC----------------TGEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 317 ~sgs~D------g~I~iwd~~~~~~~~~~----------------~~~~~V~~l~~spd~--l~~~s~d 361 (764)
++.-.+ ..|+.++.. |.....+ ..+...-+|+++|++ |+++.+.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 877777 788888876 4443222 124568899999997 6776653
No 473
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.66 E-value=76 Score=34.31 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=11.2
Q ss_pred CCcEEEEEe-CCCcEEEEeCCC
Q 046871 51 GVDYLFTGS-RDGTLKRWSLAD 71 (764)
Q Consensus 51 d~~~L~sgs-~Dg~I~iWd~~~ 71 (764)
++++.+.|+ .+..+.++|+..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 344444444 345567777753
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=18 Score=39.58 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS 296 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~ 296 (764)
.-.|+.+..++.|..++-.+.+|.+.++=.+..-.-..++.....|+|=.++-+. .|++.+..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~---------------- 165 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTS---------------- 165 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCc----------------
Confidence 4568889999999999999999977665443333333343333345554443322 23332211
Q ss_pred EeeecCceEEEEEcCCC---CEEEEecCCCcEEEEeCCCCeEEEE
Q 046871 297 YAVHTDSVWALASTPTF---SHVYSGGRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 297 l~~h~~~V~~l~~spd~---~~l~sgs~Dg~I~iwd~~~~~~~~~ 338 (764)
-.+..++|+|+. .+|..-+.|..|++||+.....+..
T Consensus 166 -----ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 166 -----LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred -----eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 123355677764 5677777899999999887665543
No 475
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.61 E-value=1e+02 Score=36.96 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCcccee-------ec--ccccceeEEEEeCCCeEEEEeCCCcEEEecC
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVGSCSAT-------FE--SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNC 112 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~-------l~--~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~ 112 (764)
-|+.|+.|++||.+.+|.+.......... +. -+..+|+.+..++.-.++-.-.|+.|.++++
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l 95 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKL 95 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeec
Confidence 47899999999999999987642111111 11 1256777777666543444455677777776
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.55 E-value=17 Score=44.54 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=27.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~ 249 (764)
......++|+|...+++.|+..|.|.+|-...-
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccce
Confidence 345567899999999999999999999975433
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=79.72 E-value=71 Score=35.83 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=62.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc---CeEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 046871 223 LAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD---NIRSLLLDSTGRYCLSGSS-------------DSMIRLW 286 (764)
Q Consensus 223 l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~sgs~-------------Dg~I~iw 286 (764)
+...++|.+++... ..++.+|+. |+.+........ .-..+...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55667888776555 788888974 666555432221 1346778899999887771 1225556
Q ss_pred eCCCCeeeEEEee--ec-------------------------CceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCeEEEE
Q 046871 287 DLGQQRCIHSYAV--HT-------------------------DSVWALASTP-TFSHVYSGGRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 287 dl~~~~~~~~l~~--h~-------------------------~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~~~~~~~~~ 338 (764)
| .+|+.+..+.. |- -.++++.+.+ ++.+++|+-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 66766665431 10 1278899988 555555555556888899888888776
Q ss_pred eec
Q 046871 339 CTG 341 (764)
Q Consensus 339 ~~~ 341 (764)
+..
T Consensus 309 lg~ 311 (477)
T PF05935_consen 309 LGP 311 (477)
T ss_dssp ES-
T ss_pred eCC
Confidence 654
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.40 E-value=1.5e+02 Score=35.61 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=47.2
Q ss_pred ccccceeEEEEe---C--C--CeEEEEeCCCcEEEecCC------CC--------Ceeeeeccc---cCCceEEEEEecC
Q 046871 82 SHVDWVNDAVLV---G--D--NTLVSCSSDTTLKTWNCS------SD--------GTCIRTLRQ---HSDYVTCLAAAEK 137 (764)
Q Consensus 82 ~h~~~V~~v~~s---~--d--~~l~s~s~Dg~V~vWd~~------~~--------~~~~~~l~~---h~~~V~~l~~~p~ 137 (764)
.-..+|..|+|. . + ..++..-....+.|.... .. ..++..+.. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 346678888887 2 1 135555555666666621 10 022223321 1235678889887
Q ss_pred CCcEEEEEeCCCeEEEEeC
Q 046871 138 NSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl 156 (764)
+...||.....|.-.|||+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEEEeccCcEEEEEe
Confidence 8889999999999999998
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.30 E-value=9.6 Score=43.72 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=46.4
Q ss_pred CCCCEEEEEeCCCeEEEEeCCC----CceeEEe-----------cc-----------CCcCeEEEEEcC----CCCEEEE
Q 046871 227 DSGNLLVSGGTEKVVRVWDPRT----GSKTIKL-----------RG-----------HTDNIRSLLLDS----TGRYCLS 276 (764)
Q Consensus 227 p~g~~l~sgs~dg~I~iwd~~~----~~~~~~l-----------~~-----------h~~~V~~l~~sp----dg~~l~s 276 (764)
++...++.+..||.+....... +...... .+ ....+.+++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566788888888887776543 2111110 00 123455566666 6789999
Q ss_pred EeCCCcEEEEeCCCCeeeEEEeee
Q 046871 277 GSSDSMIRLWDLGQQRCIHSYAVH 300 (764)
Q Consensus 277 gs~Dg~I~iwdl~~~~~~~~l~~h 300 (764)
.+.|+++|+||+.+++++.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999998887654
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.07 E-value=1.1e+02 Score=33.33 Aligned_cols=144 Identities=12% Similarity=0.134 Sum_probs=87.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---
Q 046871 218 ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK--TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR--- 292 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~--- 292 (764)
+....+..+++|.+++.|.....++-||- +.. ...-......+.++.+.+++..++++ .+|.+ +|....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 44566777888888887765544455553 322 11112234568899999999887766 56665 34444443
Q ss_pred --eeEEEeee--cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee----cCCCeEEEEeeCCc-eEEEeCCCc
Q 046871 293 --CIHSYAVH--TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT----GEHPILQLALHDDN-IWVATTDSS 363 (764)
Q Consensus 293 --~~~~l~~h--~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~~~~V~~l~~spd~-l~~~s~dg~ 363 (764)
........ ...+.++.|.+++..+++ +..|.+.... ..|+.-.... -....+.+.|.+++ .++.+.+|.
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 22222221 134888999888765555 4567666653 4444322222 24568899987766 888888998
Q ss_pred EEEe
Q 046871 364 VHRW 367 (764)
Q Consensus 364 I~iw 367 (764)
|-.|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 8765
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.96 E-value=32 Score=34.49 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=27.2
Q ss_pred EeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCC
Q 046871 423 QHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGK 458 (764)
Q Consensus 423 ~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~ 458 (764)
.+.++|||+.++.+..+. .|||..+.+.+++|..
T Consensus 174 ~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 174 FVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred eEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 456789999999888764 5679999988888854
No 482
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.91 E-value=1.2e+02 Score=33.63 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEec-----cCCcCeEEEEEcCCC------CEEEEEe-----
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK--TIKLR-----GHTDNIRSLLLDSTG------RYCLSGS----- 278 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~--~~~l~-----~h~~~V~~l~~spdg------~~l~sgs----- 278 (764)
-...+.|+|.|+|++|++--..|.|++++..++.. +..+. ...+....|+++|+- .+|+...
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 44568999999998777665569999998665432 21111 135678899999874 3444432
Q ss_pred -----CCCcEEEEeCCCC--e---eeEEEe------eecCceEEEEEcCCCCEEEEecCC
Q 046871 279 -----SDSMIRLWDLGQQ--R---CIHSYA------VHTDSVWALASTPTFSHVYSGGRD 322 (764)
Q Consensus 279 -----~Dg~I~iwdl~~~--~---~~~~l~------~h~~~V~~l~~spd~~~l~sgs~D 322 (764)
....|.-|.+... . ....+. .|. -..|+|.|||.+.++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1233444544311 1 111121 233 3467899999877755543
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.78 E-value=1e+02 Score=32.78 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=7.8
Q ss_pred CCcEEEEEeCC
Q 046871 138 NSNIVASGGLG 148 (764)
Q Consensus 138 ~~~~lasg~~d 148 (764)
++.+.+.|+.+
T Consensus 118 ~g~IYviGG~~ 128 (346)
T TIGR03547 118 NGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEcCcC
Confidence 57777777765
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.33 E-value=90 Score=35.01 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc---eEEEEEcCCC
Q 046871 237 TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS---VWALASTPTF 313 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~---V~~l~~spd~ 313 (764)
..+...++|. .|.....+.........+...++|.+++... ..++.+|+ .|+.+..+....+. -..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCC
Confidence 3445666664 3555444432222221266778898877655 78888888 57766665433221 2456778899
Q ss_pred CEEEEecC-------------CCcEEEEeCCCCeEEEEeec--------C--------------------CCeEEEEeeC
Q 046871 314 SHVYSGGR-------------DLSLYLTDLATRESLLLCTG--------E--------------------HPILQLALHD 352 (764)
Q Consensus 314 ~~l~sgs~-------------Dg~I~iwd~~~~~~~~~~~~--------~--------------------~~V~~l~~sp 352 (764)
++|+.+.. .-.|...| .+|+.+..+.. . --+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 98887761 12355566 66666554321 0 1278899988
Q ss_pred -Cc-eEEEeCC-CcEEEeeCCCCCCceeeecC
Q 046871 353 -DN-IWVATTD-SSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 353 -d~-l~~~s~d-g~I~iwd~~~~~~~~~~~~~ 381 (764)
++ |++.+.. +.|...|..+++..-.+..+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 44 7777765 47888887777766555543
No 485
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.26 E-value=35 Score=37.26 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=46.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
...++++||..|.|++||--.-+....+.+-...|..+..+.+|+++++.+. ..+.+.|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 3458999999999999996444444455666778999999999999887664 466677754
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.26 E-value=1e+02 Score=32.56 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=42.4
Q ss_pred cEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEec---------------cCCcCeEEEEEcCCCCEEEEE
Q 046871 219 SVYALAMNDSGNLLVSGGTE------KVVRVWDPRTGSKTIKLR---------------GHTDNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~d------g~I~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~l~sg 277 (764)
..-+|++.++|.++++.-.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34467777788888877667 789999976 66544431 134478899999999977766
Q ss_pred eC
Q 046871 278 SS 279 (764)
Q Consensus 278 s~ 279 (764)
..
T Consensus 165 ~E 166 (326)
T PF13449_consen 165 ME 166 (326)
T ss_pred EC
Confidence 43
No 487
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=76.67 E-value=4 Score=48.04 Aligned_cols=38 Identities=32% Similarity=0.610 Sum_probs=35.3
Q ss_pred cEEEEeCCEecCCCCCHHHHhhcccc---CCCcEEEEEEEe
Q 046871 724 SIEILCNNQVLSPDMSLATVRAYVWK---KPEDLVLNYRVV 761 (764)
Q Consensus 724 ~~el~c~~~~~~~~~~l~tv~~~~wk---~~~d~~l~y~~~ 761 (764)
-+||+|+|+++..+..++-|-..+|+ ++.-|++.||..
T Consensus 39 gmELlV~~~IisldL~v~~Vy~~vW~~~~~~~pM~v~YR~~ 79 (802)
T PF13764_consen 39 GMELLVNNKIISLDLPVRDVYEKVWKPNNQNPPMRVVYRMR 79 (802)
T ss_pred ccceeecCeeecCCCcHHHHHHHHhcccCCCCCeEEEEeec
Confidence 39999999999999999999999999 777899999974
No 488
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=76.60 E-value=1.7e+02 Score=34.91 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=51.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe----c---------------cCCcCeEEEEEcCCCCEEEE
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL----R---------------GHTDNIRSLLLDSTGRYCLS 276 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l----~---------------~h~~~V~~l~~spdg~~l~s 276 (764)
....|.+++...-+..++....||.|.++|..+.+.+... . .+-.++..++|||.+.-++.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3566888888777889999999999999998887655443 1 01113445789998888888
Q ss_pred EeCCCcEE
Q 046871 277 GSSDSMIR 284 (764)
Q Consensus 277 gs~Dg~I~ 284 (764)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888765
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.55 E-value=72 Score=35.26 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=61.3
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--eEEEe-----eecCceEEEEEcCCC------CEEEEec-----
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC--IHSYA-----VHTDSVWALASTPTF------SHVYSGG----- 320 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~--~~~l~-----~h~~~V~~l~~spd~------~~l~sgs----- 320 (764)
-.....|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+++|+. .+|+..-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34568899999998777665469999998655432 22111 124668899999986 3444331
Q ss_pred -----CCCcEEEEeCCCC-----eEEEEee-----cCCCeEEEEeeCCc-eEEEeCCC
Q 046871 321 -----RDLSLYLTDLATR-----ESLLLCT-----GEHPILQLALHDDN-IWVATTDS 362 (764)
Q Consensus 321 -----~Dg~I~iwd~~~~-----~~~~~~~-----~~~~V~~l~~spd~-l~~~s~dg 362 (764)
....|.-|.+... ....++. ..+.-..|.|.||+ |+++..|+
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554321 0111221 12334578899998 77777665
No 490
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.53 E-value=1.3e+02 Score=33.20 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 302 DSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 302 ~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899988889999999999999999974
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.41 E-value=4.9 Score=45.26 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 302 DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 302 ~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
..++++..+|.+..++++..||.|++|+.........+....|-..+.|...|++++++|..+--|.-+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccC
Confidence 4577888899999999999999999999988777667777777888999999999999999888886543
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.05 E-value=13 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeeeEEEeeecCceEEEEE
Q 046871 269 STGRYCLSGS-SDSMIRLWDLGQQRCIHSYAVHTDSVWALAS 309 (764)
Q Consensus 269 pdg~~l~sgs-~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~ 309 (764)
|++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777766655 5789999999998888877653 23334444
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.68 E-value=1.1e+02 Score=32.15 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=14.9
Q ss_pred CCCEEEEEeCCC----eEEEEeCCCCc
Q 046871 228 SGNLLVSGGTEK----VVRVWDPRTGS 250 (764)
Q Consensus 228 ~g~~l~sgs~dg----~I~iwd~~~~~ 250 (764)
++++.+.|+.++ .+.+||+.+.+
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCe
Confidence 466777777653 35688887654
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.40 E-value=35 Score=41.73 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=82.4
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCcCeEEEEE--------cCCCCEEEEEeCCCcEEEEeCCC----Cee---eEEEe--
Q 046871 236 GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL--------DSTGRYCLSGSSDSMIRLWDLGQ----QRC---IHSYA-- 298 (764)
Q Consensus 236 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~l~sgs~Dg~I~iwdl~~----~~~---~~~l~-- 298 (764)
+-|..+.+|+..++.....+.+-...|..+.+ -|.=++++.-+.--.|.++-+.- +.. ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998777777776666666543 22334544444455566664421 111 11122
Q ss_pred eecCceEEEEEcCCCCEEEEecCCCcEEEEeC----CCC---e-E-----------------EEEe-ecCCCeEEEEeeC
Q 046871 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDL----ATR---E-S-----------------LLLC-TGEHPILQLALHD 352 (764)
Q Consensus 299 ~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~----~~~---~-~-----------------~~~~-~~~~~V~~l~~sp 352 (764)
...-.|.++....+|+.|++|- ||. +|.+ ..+ + + +... .+..+|..+.+..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2234588898888888777665 554 4432 111 1 1 0111 2356899999988
Q ss_pred Cc--eEEEeCCCcEEEeeCCC
Q 046871 353 DN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 353 d~--l~~~s~dg~I~iwd~~~ 371 (764)
.. +++-++.++|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 77 88999999999999976
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.20 E-value=48 Score=34.13 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=57.5
Q ss_pred CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeeeEEEee-----ecCceEEE
Q 046871 239 KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS------SDSMIRLWDLGQQRCIHSYAV-----HTDSVWAL 307 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs------~Dg~I~iwdl~~~~~~~~l~~-----h~~~V~~l 307 (764)
..|++||..+.+-..--.+-.+.|++|.|..+.+.++.|. ....+..||+.+..- ..+.. -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3589999877655544445667899999986666666664 355688999876542 23332 23678888
Q ss_pred EEc-CCCCEEE-Eec-CC--CcEEEEeCCCC
Q 046871 308 AST-PTFSHVY-SGG-RD--LSLYLTDLATR 333 (764)
Q Consensus 308 ~~s-pd~~~l~-sgs-~D--g~I~iwd~~~~ 333 (764)
.+. .|+..++ .|. .+ ..|..||-...
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 773 3444344 333 23 34566654433
No 496
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.79 E-value=13 Score=25.17 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCCCEEEEec-CCCcEEEEeCCCCeEEEEeecCCCeEEEEe
Q 046871 311 PTFSHVYSGG-RDLSLYLTDLATRESLLLCTGEHPILQLAL 350 (764)
Q Consensus 311 pd~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~ 350 (764)
|++++|+.+. .++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677776554 578999999988887776665443444444
No 497
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=74.51 E-value=1.5e+02 Score=33.20 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=75.4
Q ss_pred eEEEEeCCCCceeEEe-ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeeeEEEee-ecCceEEEEEcCCCCEE
Q 046871 240 VVRVWDPRTGSKTIKL-RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QRCIHSYAV-HTDSVWALASTPTFSHV 316 (764)
Q Consensus 240 ~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~-h~~~V~~l~~spd~~~l 316 (764)
.+.+-+..+|..+... ......|+.+++..+|+ +-.|+...-+..|+.++ +.......+ ..++|..|.-.|+++ |
T Consensus 355 ~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-L 432 (671)
T COG3292 355 ELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-L 432 (671)
T ss_pred eEEEecCCCCcEEEEeeeccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-E
Confidence 3444444555544432 22235677777877554 55566664466677665 322222222 345688888889988 7
Q ss_pred EEecCCCcEEEEeCCCCeEEEEee------cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCC
Q 046871 317 YSGGRDLSLYLTDLATRESLLLCT------GEHPILQLALHDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 317 ~sgs~Dg~I~iwd~~~~~~~~~~~------~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~ 371 (764)
..|+.+|.++. +.+.++....+. ..+.+..+.+.+++ ++.|..+|. ..|+...
T Consensus 433 WIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~gv-a~~~sq~ 492 (671)
T COG3292 433 WIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGSGV-AAWESQR 492 (671)
T ss_pred EEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEeccee-eeecccc
Confidence 77887876553 334433333222 23447788899999 888887764 6776554
No 498
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.29 E-value=1.1e+02 Score=29.83 Aligned_cols=106 Identities=9% Similarity=0.041 Sum_probs=63.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeeEEEeeecCceEEEEEcCCCCEEEEecCCC------cEEEE---eCC
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQ--QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL------SLYLT---DLA 331 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~~--~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg------~I~iw---d~~ 331 (764)
..++-++. ..|+.+.....|.+|++.+ .+.+.+|.. -+.|..+.++..|++|+|--.+. .+|+| +..
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 34444432 3444446677899999983 344555653 37899999999999999864432 45554 322
Q ss_pred --CCeEEE-----------------------EeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 332 --TRESLL-----------------------LCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 332 --~~~~~~-----------------------~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
...++. .++...++.+++..|-. |++|+ ++.+.+|.+..
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 111111 12223456777777765 66665 55788887654
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=70.12 E-value=25 Score=33.27 Aligned_cols=31 Identities=16% Similarity=-0.043 Sum_probs=24.2
Q ss_pred CceEEEEEcCCC------CEEEEecCCCcEEEEeCCC
Q 046871 302 DSVWALASTPTF------SHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 302 ~~V~~l~~spd~------~~l~sgs~Dg~I~iwd~~~ 332 (764)
..|.+++|||.| .+|++.+.++.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4677888889999887653
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.98 E-value=16 Score=39.13 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCCEEEEEeCCCeEEEE-eCCCCc-----eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec
Q 046871 228 SGNLLVSGGTEKVVRVW-DPRTGS-----KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT 301 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iw-d~~~~~-----~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~ 301 (764)
.|.-+.+++.||.|.-| |.+.+. .++.++-....+..+.-..+.+-+++-+.+|++.++.....+.+- +..--
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAY 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhh
Confidence 35567888888888766 554432 122233223344444333344557788888888888764444332 22222
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE
Q 046871 302 DSVWALASTPTFSHVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 302 ~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
..+.-++++|.+.++++-. .|.|+++.+++..+
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 3566789999999888754 56788888776543
Done!