Query 046871
Match_columns 764
No_of_seqs 978 out of 3859
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.5E-45 8.4E-50 425.0 47.3 364 32-451 56-569 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 7.4E-43 2.5E-47 401.4 47.7 406 32-456 13-463 (577)
3 1nr0_A Actin interacting prote 100.0 1.4E-42 4.9E-47 401.8 46.6 365 29-452 12-482 (611)
4 1vyh_C Platelet-activating fac 100.0 2.2E-42 7.7E-47 380.1 41.4 281 32-369 105-409 (410)
5 2ymu_A WD-40 repeat protein; u 100.0 7.2E-42 2.5E-46 393.2 46.8 350 33-446 219-577 (577)
6 3ow8_A WD repeat-containing pr 100.0 4.8E-42 1.6E-46 364.3 39.3 289 31-370 28-320 (321)
7 1got_B GT-beta; complex (GTP-b 100.0 2.5E-40 8.6E-45 354.2 44.1 279 33-368 53-340 (340)
8 2ynn_A Coatomer subunit beta'; 100.0 2.5E-40 8.7E-45 348.3 41.7 283 33-371 11-302 (304)
9 1vyh_C Platelet-activating fac 100.0 1.5E-40 5.3E-45 365.4 41.5 286 76-447 100-409 (410)
10 1got_B GT-beta; complex (GTP-b 100.0 4.2E-40 1.4E-44 352.5 41.6 290 74-446 45-340 (340)
11 3frx_A Guanine nucleotide-bind 100.0 5E-40 1.7E-44 348.6 40.1 299 74-450 7-318 (319)
12 4gqb_B Methylosome protein 50; 100.0 2.3E-40 7.8E-45 354.5 37.7 289 29-373 24-333 (344)
13 3ow8_A WD repeat-containing pr 100.0 3.9E-40 1.3E-44 349.6 38.8 287 77-448 25-320 (321)
14 3sfz_A APAF-1, apoptotic pepti 100.0 8.1E-40 2.8E-44 410.3 46.7 414 32-456 654-1165(1249)
15 3iz6_a 40S ribosomal protein R 100.0 1.7E-40 5.9E-45 361.3 35.0 292 32-373 63-377 (380)
16 4g56_B MGC81050 protein; prote 100.0 5.2E-40 1.8E-44 354.2 37.0 292 27-373 34-345 (357)
17 2pbi_B Guanine nucleotide-bind 100.0 3.7E-39 1.3E-43 347.1 43.2 280 33-368 62-354 (354)
18 3frx_A Guanine nucleotide-bind 100.0 4.2E-39 1.4E-43 341.5 41.5 283 32-372 14-318 (319)
19 2pbi_B Guanine nucleotide-bind 100.0 4.8E-39 1.7E-43 346.2 41.6 292 75-446 55-354 (354)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-39 9.6E-44 346.8 38.0 294 32-376 12-340 (345)
21 3iz6_a 40S ribosomal protein R 100.0 6.4E-40 2.2E-44 356.8 32.7 313 62-451 46-377 (380)
22 2pm9_A Protein WEB1, protein t 100.0 3.4E-40 1.2E-44 362.4 30.8 370 34-450 11-415 (416)
23 4aow_A Guanine nucleotide-bind 100.0 1.3E-38 4.3E-43 339.7 41.1 319 57-451 9-339 (340)
24 1r5m_A SIR4-interacting protei 100.0 4.7E-39 1.6E-43 353.6 37.7 355 33-448 43-424 (425)
25 2xzm_R RACK1; ribosome, transl 100.0 2.4E-38 8.1E-43 339.3 41.2 303 75-451 12-342 (343)
26 4ery_A WD repeat-containing pr 100.0 8.9E-38 3E-42 329.9 44.4 289 20-370 13-311 (312)
27 2hes_X YDR267CP; beta-propelle 100.0 2.9E-38 9.8E-43 336.7 40.0 286 33-371 12-328 (330)
28 1gxr_A ESG1, transducin-like e 100.0 2.9E-38 1E-42 336.0 39.7 322 34-448 8-336 (337)
29 2xzm_R RACK1; ribosome, transl 100.0 5.4E-38 1.9E-42 336.5 40.3 289 33-372 19-341 (343)
30 2ynn_A Coatomer subunit beta'; 100.0 6.6E-38 2.3E-42 329.8 40.1 289 74-449 3-302 (304)
31 2hes_X YDR267CP; beta-propelle 100.0 3.5E-38 1.2E-42 336.0 38.0 300 74-450 4-329 (330)
32 3vl1_A 26S proteasome regulato 100.0 3E-38 1E-42 347.8 38.4 332 33-449 54-419 (420)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-38 1E-42 338.8 36.4 307 74-456 5-342 (345)
34 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5E-37 1.7E-41 341.3 45.4 318 33-449 116-442 (445)
35 1erj_A Transcriptional repress 100.0 1.5E-37 5.1E-42 339.6 40.2 281 33-372 62-390 (393)
36 1pgu_A Actin interacting prote 100.0 1.1E-37 3.8E-42 360.6 41.1 400 32-449 60-614 (615)
37 2oaj_A Protein SNI1; WD40 repe 100.0 5.2E-38 1.8E-42 377.5 39.2 372 33-454 15-610 (902)
38 3v7d_B Cell division control p 100.0 7.2E-37 2.5E-41 341.7 45.8 339 33-446 119-460 (464)
39 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-37 4.9E-42 389.9 44.9 367 32-456 612-1081(1249)
40 4gqb_B Methylosome protein 50; 100.0 9.5E-38 3.2E-42 334.2 36.0 300 64-452 16-334 (344)
41 1pgu_A Actin interacting prote 100.0 5.5E-37 1.9E-41 354.7 44.6 292 30-381 13-338 (615)
42 4g56_B MGC81050 protein; prote 100.0 8E-38 2.7E-42 337.0 34.9 308 54-451 18-345 (357)
43 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-37 9.1E-42 370.1 42.4 291 33-379 11-310 (814)
44 4aow_A Guanine nucleotide-bind 100.0 1.7E-36 5.8E-41 323.2 43.5 292 21-373 29-339 (340)
45 4ery_A WD repeat-containing pr 100.0 3.5E-36 1.2E-40 317.6 42.3 289 74-448 13-311 (312)
46 3dm0_A Maltose-binding peripla 100.0 1.2E-36 4.3E-41 357.7 40.1 307 77-449 375-693 (694)
47 1erj_A Transcriptional repress 100.0 3.8E-36 1.3E-40 328.5 39.8 306 63-450 41-390 (393)
48 2oaj_A Protein SNI1; WD40 repe 100.0 4.4E-37 1.5E-41 369.4 35.3 383 33-457 56-672 (902)
49 2j04_B YDR362CP, TAU91; beta p 100.0 8.2E-38 2.8E-42 352.0 25.9 308 53-448 174-516 (524)
50 1gxr_A ESG1, transducin-like e 100.0 3.2E-35 1.1E-39 312.4 43.7 280 33-369 49-335 (337)
51 3zwl_B Eukaryotic translation 100.0 5.2E-35 1.8E-39 314.8 43.8 294 33-374 30-349 (369)
52 3odt_A Protein DOA1; ubiquitin 100.0 2.7E-35 9.1E-40 309.8 40.0 288 20-377 8-302 (313)
53 3dm0_A Maltose-binding peripla 100.0 1.4E-35 4.7E-40 348.8 41.1 284 33-370 380-692 (694)
54 3zwl_B Eukaryotic translation 100.0 2.9E-35 1E-39 316.8 39.8 296 74-456 22-353 (369)
55 1sq9_A Antiviral protein SKI8; 100.0 9.2E-36 3.1E-40 325.1 35.9 297 31-372 12-396 (397)
56 3ei3_B DNA damage-binding prot 100.0 2.2E-35 7.4E-40 321.0 36.8 279 32-371 70-382 (383)
57 1sq9_A Antiviral protein SKI8; 100.0 2.4E-35 8.4E-40 321.7 34.2 314 76-451 8-397 (397)
58 3ei3_B DNA damage-binding prot 100.0 2.8E-35 9.6E-40 320.1 34.3 291 74-449 63-382 (383)
59 4e54_B DNA damage-binding prot 100.0 8.9E-36 3E-40 330.2 30.8 287 33-375 117-434 (435)
60 3k26_A Polycomb protein EED; W 100.0 2.5E-35 8.5E-40 317.2 33.0 280 33-370 16-365 (366)
61 2pm7_B Protein transport prote 100.0 5.9E-35 2E-39 306.2 34.5 249 32-331 6-284 (297)
62 3mkq_A Coatomer beta'-subunit; 100.0 3.3E-35 1.1E-39 352.0 36.7 358 33-457 53-468 (814)
63 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-35 1.6E-39 316.2 34.2 288 33-372 6-362 (372)
64 3i2n_A WD repeat-containing pr 100.0 7.3E-35 2.5E-39 312.6 34.4 287 33-373 16-355 (357)
65 3gre_A Serine/threonine-protei 100.0 1.1E-35 3.6E-40 329.6 28.4 362 33-446 15-437 (437)
66 1r5m_A SIR4-interacting protei 100.0 1.5E-34 5E-39 317.7 36.9 278 33-370 106-424 (425)
67 2pm9_A Protein WEB1, protein t 100.0 1.4E-35 4.9E-40 325.6 28.6 294 32-372 64-415 (416)
68 3dwl_C Actin-related protein 2 100.0 3.5E-36 1.2E-40 326.3 22.8 284 33-369 9-377 (377)
69 3odt_A Protein DOA1; ubiquitin 100.0 9.6E-34 3.3E-38 297.9 39.9 291 74-456 8-303 (313)
70 3gre_A Serine/threonine-protei 100.0 4.4E-35 1.5E-39 324.6 29.3 282 32-368 60-437 (437)
71 4aez_A CDC20, WD repeat-contai 100.0 4.4E-34 1.5E-38 313.0 36.4 285 33-378 89-387 (401)
72 1k8k_C P40, ARP2/3 complex 41 100.0 3.8E-34 1.3E-38 309.1 33.4 320 80-452 4-364 (372)
73 4e54_B DNA damage-binding prot 100.0 8.7E-35 3E-39 322.3 28.1 295 76-453 111-434 (435)
74 3v7d_B Cell division control p 100.0 5.2E-33 1.8E-37 310.4 41.9 289 76-456 113-428 (464)
75 3i2n_A WD repeat-containing pr 100.0 6.5E-34 2.2E-38 305.2 33.3 310 77-453 11-357 (357)
76 3dwl_C Actin-related protein 2 100.0 6.4E-35 2.2E-39 316.4 25.5 321 79-447 6-377 (377)
77 3k26_A Polycomb protein EED; W 100.0 2.5E-34 8.6E-39 309.3 29.7 287 79-449 13-366 (366)
78 4gga_A P55CDC, cell division c 100.0 6.2E-33 2.1E-37 305.8 41.2 284 37-379 107-403 (420)
79 4a11_B DNA excision repair pro 100.0 3.3E-33 1.1E-37 305.3 38.2 292 32-378 40-372 (408)
80 3bg1_A Protein SEC13 homolog; 100.0 2.1E-34 7.1E-39 304.9 26.5 250 32-331 10-292 (316)
81 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-33 7.6E-38 310.9 36.0 279 32-375 130-418 (435)
82 2pm7_B Protein transport prote 100.0 2.9E-33 9.9E-38 293.3 34.5 249 77-371 2-285 (297)
83 4a11_B DNA excision repair pro 100.0 8.1E-34 2.8E-38 310.2 31.3 308 61-456 22-372 (408)
84 3dw8_B Serine/threonine-protei 100.0 1.2E-33 3.9E-38 313.7 32.7 290 32-370 25-445 (447)
85 4aez_A CDC20, WD repeat-contai 100.0 5.3E-33 1.8E-37 304.4 36.7 290 80-456 87-387 (401)
86 2j04_A TAU60, YPL007P, hypothe 100.0 6.4E-34 2.2E-38 312.3 27.3 309 34-438 14-350 (588)
87 3vl1_A 26S proteasome regulato 100.0 5.8E-33 2E-37 305.5 34.4 302 37-371 98-419 (420)
88 4ggc_A P55CDC, cell division c 100.0 4.7E-32 1.6E-36 285.8 39.8 277 38-373 28-317 (318)
89 4gga_A P55CDC, cell division c 100.0 4E-32 1.4E-36 299.4 38.3 282 86-456 107-402 (420)
90 4h5i_A Guanine nucleotide-exch 100.0 1.5E-32 5.1E-37 296.7 33.4 280 36-372 15-344 (365)
91 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-31 6.3E-36 296.3 42.7 289 74-456 108-398 (445)
92 2j04_B YDR362CP, TAU91; beta p 100.0 9.2E-34 3.1E-38 319.0 24.1 287 33-372 205-518 (524)
93 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-32 8.6E-37 290.7 33.9 266 32-338 8-343 (351)
94 3bg1_A Protein SEC13 homolog; 100.0 2.9E-33 9.8E-38 296.1 23.5 248 78-371 7-293 (316)
95 3dw8_B Serine/threonine-protei 100.0 3.7E-32 1.3E-36 301.5 33.0 349 82-447 26-444 (447)
96 4ggc_A P55CDC, cell division c 100.0 3.4E-31 1.2E-35 279.2 38.2 275 87-450 28-316 (318)
97 1yfq_A Cell cycle arrest prote 100.0 1.6E-31 5.4E-36 285.1 35.3 285 32-369 8-322 (342)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 3.8E-32 1.3E-36 297.7 30.3 285 37-374 36-345 (402)
99 3jrp_A Fusion protein of prote 100.0 7.1E-32 2.4E-36 291.6 31.8 251 32-335 8-290 (379)
100 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-31 6.3E-36 295.5 34.7 289 78-455 127-420 (435)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 7.4E-32 2.5E-36 295.3 30.5 289 87-452 37-345 (402)
102 3f3f_A Nucleoporin SEH1; struc 100.0 9.7E-32 3.3E-36 286.1 29.1 305 77-456 4-344 (351)
103 3mmy_A MRNA export factor; mRN 100.0 9.6E-31 3.3E-35 281.3 36.2 282 32-372 36-347 (368)
104 4h5i_A Guanine nucleotide-exch 100.0 2E-31 6.9E-36 287.8 30.8 287 84-449 14-343 (365)
105 3jrp_A Fusion protein of prote 100.0 8.3E-31 2.8E-35 283.2 31.3 253 75-373 2-289 (379)
106 1yfq_A Cell cycle arrest prote 100.0 1.9E-30 6.6E-35 276.7 31.9 277 79-446 6-321 (342)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-30 1.7E-34 285.4 36.1 285 35-371 4-391 (450)
108 1l0q_A Surface layer protein; 100.0 1E-28 3.5E-33 268.8 41.7 273 53-382 3-286 (391)
109 3bws_A Protein LP49; two-domai 100.0 1.5E-28 5.1E-33 271.4 41.0 319 35-448 60-431 (433)
110 3mmy_A MRNA export factor; mRN 100.0 1.1E-29 3.6E-34 273.1 30.8 286 74-448 29-345 (368)
111 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-30 8.7E-35 276.8 25.3 264 48-369 44-331 (343)
112 2xyi_A Probable histone-bindin 100.0 1.1E-29 3.9E-34 280.7 31.3 251 33-333 126-411 (430)
113 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-29 5.1E-34 272.1 31.4 273 32-373 16-338 (355)
114 3jro_A Fusion protein of prote 100.0 1.8E-30 6.1E-35 307.4 25.7 250 32-334 6-287 (753)
115 2xyi_A Probable histone-bindin 100.0 6.2E-29 2.1E-33 274.7 33.6 253 78-371 122-410 (430)
116 3vu4_A KMHSV2; beta-propeller 100.0 4.3E-29 1.5E-33 268.5 31.5 307 66-451 3-338 (355)
117 3jro_A Fusion protein of prote 100.0 4.8E-30 1.6E-34 303.7 25.0 251 77-373 2-287 (753)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-28 4.2E-33 274.1 34.0 280 84-448 4-390 (450)
119 3bws_A Protein LP49; two-domai 100.0 8.9E-28 3.1E-32 265.2 35.9 276 36-371 123-432 (433)
120 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-29 1.9E-33 273.3 24.7 260 81-448 12-296 (588)
121 4gq1_A NUP37; propeller, trans 100.0 2.6E-29 9E-34 274.2 21.0 257 49-330 98-387 (393)
122 1l0q_A Surface layer protein; 100.0 5.1E-27 1.7E-31 255.4 38.7 270 97-457 4-283 (391)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-28 4.6E-33 263.3 24.0 267 96-448 49-332 (343)
124 2w18_A PALB2, fancn, partner a 100.0 3.8E-27 1.3E-31 243.4 32.8 280 36-447 40-355 (356)
125 4gq1_A NUP37; propeller, trans 100.0 4.5E-28 1.6E-32 264.4 22.5 224 97-370 103-388 (393)
126 1nir_A Nitrite reductase; hemo 100.0 3.1E-26 1.1E-30 259.6 36.1 336 49-457 146-522 (543)
127 2w18_A PALB2, fancn, partner a 100.0 2E-26 6.9E-31 237.9 27.2 187 94-330 143-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-24 3.5E-29 239.4 30.9 298 34-393 61-407 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 5.4E-24 1.8E-28 252.0 35.4 340 35-456 36-465 (741)
130 1nir_A Nitrite reductase; hemo 99.9 4.7E-24 1.6E-28 241.7 32.7 286 38-380 181-523 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.3E-24 1.8E-28 233.8 25.6 282 84-456 62-393 (415)
132 1k32_A Tricorn protease; prote 99.9 4.3E-23 1.5E-27 253.3 32.4 277 32-371 200-502 (1045)
133 1k32_A Tricorn protease; prote 99.9 6.6E-23 2.2E-27 251.7 32.7 360 32-451 49-504 (1045)
134 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-22 8.1E-27 237.2 31.0 346 37-456 18-450 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.9 5E-22 1.7E-26 233.8 31.4 326 38-451 28-437 (706)
136 3vgz_A Uncharacterized protein 99.9 1.5E-20 5E-25 200.9 34.9 268 35-362 40-335 (353)
137 3u4y_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 201.8 31.2 284 91-452 4-307 (331)
138 1pby_B Quinohemoprotein amine 99.9 3.1E-21 1.1E-25 204.4 28.4 270 53-380 2-319 (337)
139 1ri6_A Putative isomerase YBHE 99.9 5.6E-21 1.9E-25 203.0 29.6 269 53-370 5-307 (343)
140 2ojh_A Uncharacterized protein 99.9 1.8E-21 6.2E-26 201.6 23.8 250 57-361 17-292 (297)
141 3u4y_A Uncharacterized protein 99.9 2.7E-20 9.2E-25 197.2 32.8 271 48-373 5-306 (331)
142 2ecf_A Dipeptidyl peptidase IV 99.9 5.1E-21 1.7E-25 226.5 28.1 285 84-456 36-421 (741)
143 3vgz_A Uncharacterized protein 99.9 8.4E-20 2.9E-24 195.0 33.4 278 83-440 39-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 2.3E-20 7.9E-25 197.7 28.2 269 97-456 3-317 (337)
145 1z68_A Fibroblast activation p 99.9 5.6E-21 1.9E-25 225.3 24.0 326 49-456 24-450 (719)
146 2z3z_A Dipeptidyl aminopeptida 99.9 3.9E-20 1.3E-24 217.6 30.1 279 36-373 82-437 (706)
147 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.6E-24 193.1 29.5 268 33-353 35-333 (343)
148 1xfd_A DIP, dipeptidyl aminope 99.9 1E-20 3.5E-25 223.1 23.1 279 86-449 18-393 (723)
149 3o4h_A Acylamino-acid-releasin 99.9 1.1E-20 3.8E-25 217.0 22.8 270 34-371 20-315 (582)
150 2ojh_A Uncharacterized protein 99.8 7.6E-20 2.6E-24 189.3 23.6 234 33-323 39-293 (297)
151 3hfq_A Uncharacterized protein 99.8 3.1E-18 1.1E-22 182.8 33.3 284 54-375 4-323 (347)
152 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-18 4E-23 185.6 29.5 278 48-380 7-334 (349)
153 3scy_A Hypothetical bacterial 99.8 4.1E-18 1.4E-22 183.0 33.2 286 50-374 11-342 (361)
154 3o4h_A Acylamino-acid-releasin 99.8 3.9E-19 1.3E-23 204.1 23.7 267 83-449 20-315 (582)
155 3hfq_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 182.7 29.1 253 34-337 38-324 (347)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.7E-23 189.3 29.1 223 62-333 23-279 (434)
157 3scy_A Hypothetical bacterial 99.8 2.3E-17 7.7E-22 177.2 33.1 275 34-351 48-360 (361)
158 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-18 9.7E-23 182.6 25.0 233 132-456 5-332 (349)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 1.8E-18 6.3E-23 190.4 24.2 224 105-372 23-279 (434)
160 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.7E-22 197.6 28.9 338 35-456 16-456 (740)
161 1z68_A Fibroblast activation p 99.8 1.6E-18 5.6E-23 204.2 21.6 271 89-449 20-391 (719)
162 3pe7_A Oligogalacturonate lyas 99.8 1.7E-17 5.7E-22 179.8 24.8 284 33-370 28-381 (388)
163 3pe7_A Oligogalacturonate lyas 99.8 1.1E-16 3.6E-21 173.5 27.1 302 67-448 15-381 (388)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-16 3.8E-21 172.2 26.6 273 54-372 4-342 (365)
165 3azo_A Aminopeptidase; POP fam 99.8 2.9E-16 1E-20 183.0 32.0 291 33-375 21-373 (662)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.9E-16 6.6E-21 170.3 24.6 243 35-333 39-342 (365)
167 1q7f_A NHL, brain tumor CG1071 99.7 1.4E-14 4.9E-19 149.8 34.9 242 31-333 25-281 (286)
168 3fvz_A Peptidyl-glycine alpha- 99.7 3.3E-15 1.1E-19 158.2 29.5 251 36-332 24-322 (329)
169 1q7f_A NHL, brain tumor CG1071 99.7 1.9E-14 6.4E-19 148.8 34.0 240 82-374 27-283 (286)
170 3c5m_A Oligogalacturonate lyas 99.7 1.2E-15 4E-20 165.5 23.0 271 68-375 16-333 (396)
171 3azo_A Aminopeptidase; POP fam 99.7 4.5E-15 1.5E-19 173.0 29.5 241 77-369 16-321 (662)
172 2oiz_A Aromatic amine dehydrog 99.7 1.2E-14 4E-19 156.0 29.3 271 50-378 13-343 (361)
173 3c5m_A Oligogalacturonate lyas 99.7 5.4E-16 1.8E-20 168.1 18.6 272 35-369 35-380 (396)
174 3fvz_A Peptidyl-glycine alpha- 99.7 2.7E-14 9.4E-19 151.1 30.1 248 84-372 23-323 (329)
175 4a5s_A Dipeptidyl peptidase 4 99.7 6.7E-15 2.3E-19 173.7 27.5 237 86-375 18-357 (740)
176 2z2n_A Virginiamycin B lyase; 99.7 9.2E-13 3.1E-17 136.5 39.7 278 33-372 12-296 (299)
177 2oiz_A Aromatic amine dehydrog 99.7 2.6E-14 9E-19 153.2 28.6 260 40-354 54-359 (361)
178 1qks_A Cytochrome CD1 nitrite 99.7 5.5E-13 1.9E-17 150.6 40.0 337 49-457 164-546 (567)
179 2gop_A Trilobed protease; beta 99.6 2.9E-14 9.9E-19 151.7 24.2 253 37-370 16-330 (347)
180 2dg1_A DRP35, lactonase; beta 99.6 1E-13 3.6E-18 146.6 28.2 266 37-362 7-301 (333)
181 2dg1_A DRP35, lactonase; beta 99.6 3.8E-13 1.3E-17 142.2 29.1 232 85-370 6-262 (333)
182 2xdw_A Prolyl endopeptidase; a 99.6 2.4E-13 8.3E-18 159.6 30.0 251 33-334 122-416 (710)
183 2z2n_A Virginiamycin B lyase; 99.6 1.1E-11 3.8E-16 128.2 37.9 278 82-451 12-297 (299)
184 1qks_A Cytochrome CD1 nitrite 99.6 2.4E-12 8.3E-17 145.3 35.1 288 37-379 198-546 (567)
185 1rwi_B Serine/threonine-protei 99.6 5.7E-13 1.9E-17 136.2 27.2 241 37-335 25-267 (270)
186 3dsm_A Uncharacterized protein 99.6 2E-12 6.9E-17 136.6 31.8 261 104-456 16-308 (328)
187 3dsm_A Uncharacterized protein 99.6 1E-12 3.5E-17 138.9 29.1 267 60-380 15-310 (328)
188 2gop_A Trilobed protease; beta 99.6 6.9E-13 2.4E-17 141.0 27.4 240 104-451 42-332 (347)
189 2xdw_A Prolyl endopeptidase; a 99.6 1.2E-12 4.1E-17 153.7 31.9 276 50-373 81-416 (710)
190 3e5z_A Putative gluconolactona 99.5 1.2E-12 4.2E-17 135.9 26.7 236 34-335 26-289 (296)
191 2qc5_A Streptogramin B lactona 99.5 3.7E-11 1.3E-15 124.4 37.8 275 33-369 17-298 (300)
192 3e5z_A Putative gluconolactona 99.5 1.7E-12 5.9E-17 134.8 27.4 244 77-374 20-289 (296)
193 2bkl_A Prolyl endopeptidase; m 99.5 4.4E-13 1.5E-17 157.0 25.0 246 32-338 117-403 (695)
194 3no2_A Uncharacterized protein 99.5 2.1E-12 7.2E-17 132.7 27.1 240 50-340 3-260 (276)
195 1rwi_B Serine/threonine-protei 99.5 2.4E-12 8.2E-17 131.5 27.1 237 86-373 25-266 (270)
196 2bkl_A Prolyl endopeptidase; m 99.5 7.5E-13 2.6E-17 155.0 24.6 243 124-452 118-400 (695)
197 3no2_A Uncharacterized protein 99.5 5.3E-12 1.8E-16 129.6 25.6 212 93-360 3-231 (276)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.7E-11 1.3E-15 125.5 28.6 237 35-332 17-299 (314)
199 2qc5_A Streptogramin B lactona 99.4 8.5E-10 2.9E-14 114.0 38.2 234 83-370 18-259 (300)
200 1yr2_A Prolyl oligopeptidase; 99.4 9.1E-12 3.1E-16 146.9 24.9 275 49-373 115-443 (741)
201 2mad_H Methylamine dehydrogena 99.4 6.5E-10 2.2E-14 119.2 35.7 271 49-378 29-357 (373)
202 1yr2_A Prolyl oligopeptidase; 99.4 1.5E-11 5.2E-16 145.0 25.0 247 33-336 160-445 (741)
203 2mad_H Methylamine dehydrogena 99.4 9.2E-10 3.1E-14 118.0 35.1 263 106-456 48-357 (373)
204 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2E-09 6.8E-14 115.7 37.2 273 52-379 53-345 (376)
205 3sjl_D Methylamine dehydrogena 99.4 1.7E-10 5.9E-15 122.3 27.4 274 49-380 41-372 (386)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 6.8E-10 2.3E-14 115.8 29.0 241 82-371 15-299 (314)
207 3sjl_D Methylamine dehydrogena 99.3 4.5E-10 1.5E-14 119.1 25.8 256 41-353 83-384 (386)
208 3hrp_A Uncharacterized protein 99.3 1.1E-09 3.8E-14 119.0 28.9 237 36-330 131-408 (409)
209 1kb0_A Quinohemoprotein alcoho 99.3 8.8E-10 3E-14 127.7 28.9 307 52-381 77-517 (677)
210 1xip_A Nucleoporin NUP159; bet 99.3 9.3E-11 3.2E-15 124.9 18.5 175 128-354 39-225 (388)
211 3hrp_A Uncharacterized protein 99.3 2.7E-09 9.1E-14 116.0 30.4 234 85-369 131-408 (409)
212 1xip_A Nucleoporin NUP159; bet 99.3 3.7E-11 1.2E-15 128.0 15.0 179 219-435 39-230 (388)
213 3iuj_A Prolyl endopeptidase; h 99.3 5.5E-10 1.9E-14 130.4 26.2 244 32-338 125-411 (693)
214 3hxj_A Pyrrolo-quinoline quino 99.3 3.8E-10 1.3E-14 118.6 22.5 256 52-375 30-287 (330)
215 1yiq_A Quinohemoprotein alcoho 99.2 1.1E-09 3.7E-14 127.3 27.1 308 52-381 70-515 (689)
216 3g4e_A Regucalcin; six bladed 99.2 3E-09 1E-13 110.4 27.7 226 35-320 12-260 (297)
217 3c75_H MADH, methylamine dehyd 99.2 8.8E-10 3E-14 119.0 23.7 266 105-456 99-409 (426)
218 3g4e_A Regucalcin; six bladed 99.2 9E-09 3.1E-13 106.7 30.4 228 82-361 10-262 (297)
219 3c75_H MADH, methylamine dehyd 99.2 1.5E-09 5E-14 117.2 24.3 271 50-378 82-409 (426)
220 3dr2_A Exported gluconolactona 99.2 3.9E-09 1.3E-13 109.9 26.0 230 77-362 37-298 (305)
221 2hz6_A Endoplasmic reticulum t 99.2 3.9E-13 1.3E-17 144.5 -5.4 255 51-370 8-278 (369)
222 3dr2_A Exported gluconolactona 99.2 4.6E-09 1.6E-13 109.3 25.9 231 118-441 36-299 (305)
223 2qe8_A Uncharacterized protein 99.2 1.2E-09 4.1E-14 115.9 21.7 254 36-360 17-309 (343)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.2E-08 7.4E-13 107.6 31.4 268 95-456 53-344 (376)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 1.9E-08 6.5E-13 105.8 29.0 219 38-320 51-290 (326)
226 3iuj_A Prolyl endopeptidase; h 99.1 4.1E-09 1.4E-13 123.0 23.1 241 82-374 126-408 (693)
227 1yiq_A Quinohemoprotein alcoho 99.1 1.1E-08 3.9E-13 118.7 26.5 196 95-338 70-344 (689)
228 1kb0_A Quinohemoprotein alcoho 99.1 1.3E-08 4.6E-13 117.8 26.7 198 95-340 77-354 (677)
229 2ghs_A AGR_C_1268P; regucalcin 99.1 1.6E-07 5.4E-12 98.7 31.3 222 87-362 51-293 (326)
230 1mda_H Methylamine dehydrogena 99.0 1.6E-08 5.5E-13 107.3 21.9 268 63-353 47-367 (368)
231 2hz6_A Endoplasmic reticulum t 99.0 7.2E-11 2.5E-15 126.7 3.7 188 228-456 8-199 (369)
232 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-08 5.1E-13 106.3 21.4 263 37-372 61-325 (330)
233 4a2l_A BT_4663, two-component 99.0 3.3E-06 1.1E-10 100.1 43.2 364 38-453 175-575 (795)
234 1kv9_A Type II quinohemoprotei 99.0 9.3E-08 3.2E-12 110.6 26.5 305 52-380 66-497 (668)
235 1npe_A Nidogen, entactin; glyc 99.0 2.4E-06 8.3E-11 86.6 33.8 249 53-354 2-262 (267)
236 1mda_H Methylamine dehydrogena 98.9 2.5E-08 8.6E-13 105.8 19.2 267 97-457 34-354 (368)
237 4a2l_A BT_4663, two-component 98.9 1.2E-05 4.3E-10 95.1 43.6 363 35-456 214-620 (795)
238 2qe8_A Uncharacterized protein 98.9 3.7E-08 1.3E-12 104.4 18.8 226 32-328 63-317 (343)
239 1npe_A Nidogen, entactin; glyc 98.9 2.9E-06 1E-10 86.0 30.9 226 105-379 10-246 (267)
240 2ad6_A Methanol dehydrogenase 98.8 1.4E-06 4.7E-11 98.6 29.7 309 52-379 62-502 (571)
241 2ece_A 462AA long hypothetical 98.8 1.1E-06 3.7E-11 93.8 26.6 153 219-372 139-353 (462)
242 1w6s_A Methanol dehydrogenase 98.8 3.4E-06 1.2E-10 95.5 29.9 310 52-379 62-511 (599)
243 3v9f_A Two-component system se 98.8 6.2E-05 2.1E-09 88.9 41.7 335 36-453 163-528 (781)
244 1kv9_A Type II quinohemoprotei 98.8 1.8E-06 6.1E-11 99.9 27.6 196 95-339 66-340 (668)
245 3v9f_A Two-component system se 98.8 8.2E-05 2.8E-09 87.8 42.5 279 36-373 258-570 (781)
246 1flg_A Protein (quinoprotein e 98.7 1.4E-05 4.9E-10 90.4 33.6 315 52-380 68-525 (582)
247 2ece_A 462AA long hypothetical 98.7 4.3E-06 1.5E-10 89.2 27.1 223 50-320 93-399 (462)
248 2ad6_A Methanol dehydrogenase 98.6 1.3E-05 4.3E-10 90.8 29.3 110 230-340 161-343 (571)
249 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.9E-10 80.8 24.0 201 118-372 11-238 (266)
250 2iwa_A Glutamine cyclotransfer 98.6 9.3E-06 3.2E-10 81.4 23.0 203 220-450 23-238 (266)
251 1fwx_A Nitrous oxide reductase 98.6 2.4E-06 8.3E-11 94.3 20.4 152 218-371 134-361 (595)
252 1w6s_A Methanol dehydrogenase 98.5 3E-05 1E-09 87.7 28.3 103 237-340 180-350 (599)
253 1flg_A Protein (quinoprotein e 98.5 4E-05 1.4E-09 86.8 28.5 103 238-341 183-364 (582)
254 3nol_A Glutamine cyclotransfer 98.5 1.7E-05 5.7E-10 78.6 21.9 190 220-438 45-244 (262)
255 2fp8_A Strictosidine synthase; 98.5 3.9E-05 1.3E-09 80.0 26.0 234 37-333 20-314 (322)
256 2fp8_A Strictosidine synthase; 98.5 8.7E-05 3E-09 77.3 28.7 192 219-448 81-312 (322)
257 1fwx_A Nitrous oxide reductase 98.4 5.1E-06 1.7E-10 91.8 18.1 196 228-449 100-361 (595)
258 3nok_A Glutaminyl cyclase; bet 98.4 4.2E-05 1.4E-09 75.7 22.2 186 118-359 45-253 (268)
259 3v64_C Agrin; beta propeller, 98.4 0.0005 1.7E-08 72.5 32.3 241 88-380 37-284 (349)
260 3v65_B Low-density lipoprotein 98.4 0.00039 1.3E-08 74.5 31.6 242 88-380 80-327 (386)
261 3mbr_X Glutamine cyclotransfer 98.4 0.0001 3.4E-09 72.3 24.0 156 218-379 21-187 (243)
262 2xbg_A YCF48-like protein; pho 98.4 0.0011 3.7E-08 69.2 33.6 268 36-369 36-320 (327)
263 3nol_A Glutamine cyclotransfer 98.4 4.6E-05 1.6E-09 75.4 21.2 204 251-490 33-242 (262)
264 3sov_A LRP-6, low-density lipo 98.4 0.00038 1.3E-08 72.3 29.6 229 104-380 12-247 (318)
265 3p5b_L Low density lipoprotein 98.3 0.0013 4.3E-08 70.7 34.0 237 97-380 85-329 (400)
266 1ijq_A LDL receptor, low-densi 98.3 0.0012 4E-08 68.5 32.7 229 104-379 9-246 (316)
267 3nok_A Glutaminyl cyclase; bet 98.3 4.8E-05 1.6E-09 75.3 20.0 190 261-490 56-252 (268)
268 3v64_C Agrin; beta propeller, 98.2 0.0015 5.1E-08 68.8 31.0 244 35-339 33-282 (349)
269 3mbr_X Glutamine cyclotransfer 98.2 0.00031 1.1E-08 68.8 23.2 204 251-490 11-221 (243)
270 3v65_B Low-density lipoprotein 98.2 0.0019 6.5E-08 69.0 31.2 244 37-340 78-326 (386)
271 2xbg_A YCF48-like protein; pho 98.2 0.004 1.4E-07 64.8 33.0 148 218-372 122-279 (327)
272 3qqz_A Putative uncharacterize 98.2 0.0008 2.7E-08 66.8 25.9 200 121-369 21-251 (255)
273 1ijq_A LDL receptor, low-densi 98.1 0.0066 2.3E-07 62.8 33.6 231 54-339 3-245 (316)
274 1k3i_A Galactose oxidase precu 98.1 0.00031 1.1E-08 81.0 25.7 272 50-359 195-529 (656)
275 2p4o_A Hypothetical protein; p 98.1 0.0014 4.8E-08 67.5 28.3 223 85-362 32-279 (306)
276 2p4o_A Hypothetical protein; p 98.1 0.00093 3.2E-08 68.9 26.6 234 36-322 32-278 (306)
277 1k3i_A Galactose oxidase precu 98.1 0.00014 4.9E-09 83.8 21.5 235 89-371 190-497 (656)
278 3p5b_L Low density lipoprotein 98.1 0.013 4.3E-07 62.9 34.8 235 53-340 84-328 (400)
279 3sov_A LRP-6, low-density lipo 98.0 0.0064 2.2E-07 62.9 29.5 235 54-339 6-245 (318)
280 3tc9_A Hypothetical hydrolase; 98.0 0.0025 8.7E-08 69.1 27.2 233 86-370 138-429 (430)
281 3qqz_A Putative uncharacterize 98.0 0.005 1.7E-07 61.1 26.7 159 213-372 22-205 (255)
282 3m0c_C LDL receptor, low-densi 98.0 0.0089 3.1E-07 69.6 33.1 232 102-379 401-640 (791)
283 4a0p_A LRP6, LRP-6, low-densit 97.9 0.016 5.5E-07 65.9 33.6 234 96-380 7-246 (628)
284 2xe4_A Oligopeptidase B; hydro 97.9 0.001 3.5E-08 77.9 24.4 149 221-369 224-398 (751)
285 2xe4_A Oligopeptidase B; hydro 97.9 0.00036 1.2E-08 81.7 20.5 150 219-371 175-354 (751)
286 3tc9_A Hypothetical hydrolase; 97.9 0.0031 1.1E-07 68.4 26.0 235 37-331 138-429 (430)
287 4hw6_A Hypothetical protein, I 97.9 0.0042 1.4E-07 67.3 27.0 238 37-331 140-432 (433)
288 4hw6_A Hypothetical protein, I 97.9 0.0066 2.3E-07 65.8 28.0 233 86-370 140-432 (433)
289 3ei3_A DNA damage-binding prot 97.9 0.057 1.9E-06 65.7 38.8 370 35-449 553-999 (1158)
290 3amr_A 3-phytase; beta-propell 97.8 0.0034 1.2E-07 64.8 22.6 195 228-456 39-271 (355)
291 3ott_A Two-component system se 97.7 0.14 4.8E-06 59.7 38.8 269 35-368 21-304 (758)
292 3s94_A LRP-6, low-density lipo 97.6 0.018 6.1E-07 65.4 28.1 229 103-379 16-251 (619)
293 3kya_A Putative phosphatase; s 97.6 0.014 4.7E-07 63.7 25.6 252 38-336 141-479 (496)
294 3m0c_C LDL receptor, low-densi 97.6 0.058 2E-06 62.8 32.1 233 54-339 397-639 (791)
295 2xzh_A Clathrin heavy chain 1; 97.6 0.082 2.8E-06 53.5 28.2 229 49-332 75-332 (365)
296 3amr_A 3-phytase; beta-propell 97.6 0.016 5.3E-07 59.8 23.6 203 49-298 37-272 (355)
297 2p9w_A MAL S 1 allergenic prot 97.6 0.011 3.8E-07 60.4 22.1 151 220-370 15-214 (334)
298 2ism_A Putative oxidoreductase 97.5 0.01 3.5E-07 62.4 22.7 233 85-360 31-333 (352)
299 1n7d_A LDL receptor, low-densi 97.5 0.00047 1.6E-08 79.7 13.4 158 221-379 456-622 (699)
300 3s94_A LRP-6, low-density lipo 97.5 0.21 7.3E-06 56.5 42.3 155 218-373 349-512 (619)
301 3kya_A Putative phosphatase; s 97.5 0.066 2.3E-06 58.3 28.9 222 218-456 186-482 (496)
302 3ott_A Two-component system se 97.4 0.31 1.1E-05 56.7 41.4 271 35-371 62-352 (758)
303 2p9w_A MAL S 1 allergenic prot 97.4 0.021 7E-07 58.4 22.3 168 124-333 10-216 (334)
304 4a0p_A LRP6, LRP-6, low-densit 97.3 0.34 1.2E-05 54.9 44.9 323 37-372 124-509 (628)
305 1bpo_A Protein (clathrin); cla 97.3 0.22 7.7E-06 52.4 29.7 222 49-325 74-324 (494)
306 3a9g_A Putative uncharacterize 97.2 0.14 4.9E-06 53.5 27.3 233 85-360 29-330 (354)
307 1n7d_A LDL receptor, low-densi 97.2 0.0026 8.9E-08 73.5 14.7 205 218-457 406-622 (699)
308 2xzh_A Clathrin heavy chain 1; 97.2 0.24 8.1E-06 50.2 26.3 269 53-375 37-336 (365)
309 2ism_A Putative oxidoreductase 97.0 0.089 3.1E-06 55.1 22.8 101 37-146 32-153 (352)
310 2vpj_A Kelch-like protein 12; 97.0 0.041 1.4E-06 56.0 19.4 103 228-334 159-280 (301)
311 2g8s_A Glucose/sorbosone dehyd 96.8 0.39 1.3E-05 50.1 25.7 243 85-368 18-349 (353)
312 2xn4_A Kelch-like protein 2; s 96.8 0.065 2.2E-06 54.6 19.3 104 228-334 155-278 (302)
313 3ei3_A DNA damage-binding prot 96.7 0.62 2.1E-05 56.6 29.5 313 50-370 284-635 (1158)
314 3pbp_A Nucleoporin NUP82; beta 96.6 0.09 3.1E-06 55.3 18.6 140 225-367 28-208 (452)
315 3a9g_A Putative uncharacterize 96.5 0.51 1.7E-05 49.2 24.0 61 260-320 259-330 (354)
316 3ii7_A Kelch-like protein 7; p 96.5 0.15 5E-06 52.0 19.5 103 228-334 149-274 (306)
317 2vpj_A Kelch-like protein 12; 96.4 0.15 5E-06 51.8 18.9 141 228-372 62-232 (301)
318 3sre_A PON1, serum paraoxonase 96.4 1.1 3.8E-05 46.5 30.0 110 218-331 165-297 (355)
319 1bpo_A Protein (clathrin); cla 96.4 1.3 4.5E-05 46.7 29.9 270 52-375 35-335 (494)
320 3sre_A PON1, serum paraoxonase 96.3 0.64 2.2E-05 48.3 23.1 149 219-370 113-297 (355)
321 2g8s_A Glucose/sorbosone dehyd 96.3 1.2 4E-05 46.4 25.3 66 260-325 271-347 (353)
322 1zgk_A Kelch-like ECH-associat 96.1 0.26 9E-06 50.2 18.9 103 228-334 168-289 (308)
323 2xn4_A Kelch-like protein 2; s 96.1 0.26 8.8E-06 50.0 18.4 141 228-372 61-230 (302)
324 4asc_A Kelch repeat and BTB do 95.9 0.39 1.3E-05 49.0 18.8 63 228-292 148-223 (315)
325 2be1_A Serine/threonine-protei 95.9 0.027 9.3E-07 58.2 9.7 140 229-368 10-181 (339)
326 3ii7_A Kelch-like protein 7; p 95.8 0.67 2.3E-05 46.9 20.3 141 228-372 55-226 (306)
327 1xi4_A Clathrin heavy chain; a 95.6 0.44 1.5E-05 57.7 19.5 235 48-333 73-332 (1630)
328 1cru_A Protein (soluble quinop 95.5 0.86 2.9E-05 49.3 20.5 104 217-320 26-162 (454)
329 4asc_A Kelch repeat and BTB do 95.5 0.55 1.9E-05 47.9 18.1 142 228-373 98-279 (315)
330 3pbp_A Nucleoporin NUP82; beta 95.4 0.63 2.2E-05 49.0 17.8 104 266-371 27-158 (452)
331 2woz_A Kelch repeat and BTB do 95.4 0.49 1.7E-05 48.3 17.4 63 228-292 158-233 (318)
332 3s25_A Hypothetical 7-bladed b 95.3 2.9 9.9E-05 42.3 24.6 137 224-371 151-293 (302)
333 1tl2_A L10, protein (tachylect 95.3 0.061 2.1E-06 51.3 8.8 138 219-364 42-203 (236)
334 3das_A Putative oxidoreductase 95.1 1.3 4.3E-05 45.9 19.2 143 217-360 31-220 (347)
335 2woz_A Kelch repeat and BTB do 95.0 1.9 6.6E-05 43.7 20.5 143 227-372 55-232 (318)
336 1zgk_A Kelch-like ECH-associat 95.0 0.59 2E-05 47.5 16.4 141 228-372 70-241 (308)
337 2be1_A Serine/threonine-protei 94.9 0.14 4.8E-06 52.8 11.3 114 229-345 111-245 (339)
338 3das_A Putative oxidoreductase 94.8 4.4 0.00015 41.8 26.0 105 37-147 33-159 (347)
339 2r2q_A Gamma-aminobutyric acid 94.7 0.11 3.8E-06 43.7 8.1 86 634-759 24-109 (110)
340 1xi4_A Clathrin heavy chain; a 94.7 2.9 9.9E-05 50.8 22.8 262 60-375 46-335 (1630)
341 1tl2_A L10, protein (tachylect 94.5 2 6.8E-05 40.9 17.0 181 51-283 3-203 (236)
342 2uvk_A YJHT; unknown function, 94.2 1.4 4.6E-05 45.7 17.5 56 282-339 286-349 (357)
343 1eo6_A GATE-16, golgi-associat 94.2 0.19 6.6E-06 42.7 8.6 88 635-762 26-113 (117)
344 3h9d_A ATG8, microtubule-assoc 94.1 0.27 9.2E-06 41.8 9.2 88 635-762 29-116 (119)
345 3qhy_B Beta-lactamase inhibito 94.1 5.2 0.00018 39.9 24.6 243 37-356 25-267 (282)
346 3m95_A Autophagy related prote 93.8 0.29 9.8E-06 41.9 8.8 87 635-761 34-120 (125)
347 3rui_B Autophagy-related prote 93.8 0.39 1.3E-05 40.8 9.5 88 635-762 28-115 (118)
348 2zjd_A Microtubule-associated 93.2 0.4 1.4E-05 41.4 8.8 87 635-761 33-121 (130)
349 1cru_A Protein (soluble quinop 93.1 11 0.00037 40.5 26.9 105 37-147 28-163 (454)
350 2uvk_A YJHT; unknown function, 93.0 3.2 0.00011 42.9 17.6 140 239-379 168-350 (357)
351 3qhy_B Beta-lactamase inhibito 92.9 8.1 0.00028 38.5 22.2 142 219-371 64-207 (282)
352 3s25_A Hypothetical 7-bladed b 92.8 8.2 0.00028 38.9 19.8 61 224-289 190-254 (302)
353 2zwa_A Leucine carboxyl methyl 92.5 2.9 0.0001 47.9 17.7 106 51-159 397-523 (695)
354 4gdk_A Ubiquitin-like protein 92.3 0.53 1.8E-05 37.9 7.7 85 635-762 3-88 (91)
355 1wz3_A Autophagy 12B, ATG12B, 91.1 0.7 2.4E-05 37.6 7.4 86 631-762 7-93 (96)
356 1zi0_A DNA gyrase subunit A; b 87.0 27 0.00092 35.1 26.6 197 50-289 1-225 (307)
357 2zwa_A Leucine carboxyl methyl 86.6 16 0.00055 41.6 17.6 146 227-373 396-579 (695)
358 3b7f_A Glycosyl hydrolase, BNR 86.4 34 0.0012 35.6 27.6 99 218-319 177-296 (394)
359 3b7f_A Glycosyl hydrolase, BNR 84.3 42 0.0014 34.8 27.9 130 219-351 233-391 (394)
360 3w1s_C Ubiquitin-like protein 83.3 3.7 0.00013 32.9 7.0 83 634-762 5-88 (91)
361 1suu_A DNA gyrase subunit A; t 82.5 43 0.0015 33.7 25.5 195 50-289 6-230 (312)
362 3uc1_A DNA gyrase subunit A; D 77.3 65 0.0022 32.6 27.2 236 52-331 3-278 (327)
363 3no0_A DNA gyrase subunit A; D 74.1 70 0.0024 31.4 18.8 153 217-371 67-246 (276)
364 3kci_A Probable E3 ubiquitin-p 72.8 92 0.0031 32.2 30.8 150 219-370 106-292 (389)
365 3sbq_A Nitrous-oxide reductase 72.3 13 0.00044 40.5 9.4 90 282-371 299-408 (638)
366 3sbq_A Nitrous-oxide reductase 70.5 20 0.00068 39.1 10.3 91 241-332 300-408 (638)
367 4hvt_A Ritya.17583.B, post-pro 69.4 1.6E+02 0.0053 33.4 24.6 97 237-335 318-432 (711)
368 4gq2_M Nucleoporin NUP120; bet 67.5 20 0.00068 42.5 10.8 37 420-456 237-273 (950)
369 2wg3_C Hedgehog-interacting pr 64.2 1.5E+02 0.0053 31.5 28.2 30 127-157 14-44 (463)
370 4gq2_M Nucleoporin NUP120; bet 61.5 54 0.0018 38.8 13.0 38 261-298 237-274 (950)
371 1sqj_A OXG-RCBH, oligoxylogluc 60.3 2.4E+02 0.0081 32.4 24.4 111 35-149 14-143 (789)
372 3gs2_A E3 ubiquitin-protein li 59.7 8.9 0.0003 31.1 3.8 29 733-761 82-110 (111)
373 3uc1_A DNA gyrase subunit A; D 59.4 1.5E+02 0.0052 29.8 22.3 153 217-371 94-279 (327)
374 4fhn_B Nucleoporin NUP120; pro 58.3 17 0.00057 44.2 8.0 37 420-456 239-275 (1139)
375 3f7f_A Nucleoporin NUP120; nuc 58.2 39 0.0013 38.1 10.2 96 342-457 161-258 (729)
376 1sqj_A OXG-RCBH, oligoxylogluc 57.1 2.7E+02 0.0091 31.9 25.8 61 84-146 14-83 (789)
377 3l6v_A GYRA, DNA gyrase subuni 51.0 2.2E+02 0.0076 29.2 29.7 108 50-158 5-132 (370)
378 1wp5_A Topoisomerase IV; broke 50.2 2.1E+02 0.0072 28.7 25.2 198 50-289 3-224 (323)
379 2inc_C TOUB protein; DIIRON, 4 50.1 9.7 0.00033 29.4 2.5 20 724-743 48-69 (83)
380 4fhn_B Nucleoporin NUP120; pro 49.6 34 0.0012 41.5 8.8 38 261-298 239-276 (1139)
381 1zvt_A Topoisomerase IV subuni 46.2 2.1E+02 0.0072 27.5 12.4 144 228-371 1-163 (256)
382 3kci_A Probable E3 ubiquitin-p 46.1 2.6E+02 0.0089 28.6 30.3 234 96-371 63-345 (389)
383 4d9s_A UVB-resistance protein 42.8 3E+02 0.01 28.4 35.5 147 219-371 174-357 (406)
384 3zwu_A Alkaline phosphatase PH 41.9 71 0.0024 35.3 9.0 59 219-277 477-548 (592)
385 1zi0_A DNA gyrase subunit A; b 40.0 2.9E+02 0.0098 27.3 26.7 152 218-371 95-277 (307)
386 4a9v_A PHOX; hydrolase, beta-p 37.4 1.3E+02 0.0044 33.0 9.8 61 218-278 476-549 (592)
387 3zwu_A Alkaline phosphatase PH 37.0 98 0.0033 34.2 9.1 59 261-319 477-548 (592)
388 3q6k_A 43.2 kDa salivary prote 35.6 3.8E+02 0.013 27.5 20.2 140 218-359 152-341 (381)
389 3f7f_A Nucleoporin NUP120; nuc 34.5 54 0.0019 37.0 6.5 37 261-299 223-259 (729)
390 1suu_A DNA gyrase subunit A; t 33.1 3.7E+02 0.013 26.6 28.4 102 228-331 113-230 (312)
391 3no0_A DNA gyrase subunit A; D 32.7 3.5E+02 0.012 26.2 23.6 199 84-330 23-244 (276)
392 4a9v_A PHOX; hydrolase, beta-p 29.7 2E+02 0.0067 31.5 9.7 59 261-319 477-548 (592)
393 2wg3_C Hedgehog-interacting pr 26.5 5.9E+02 0.02 26.8 29.2 106 38-149 16-160 (463)
394 4hvt_A Ritya.17583.B, post-pro 25.2 7.6E+02 0.026 27.7 21.7 91 279-370 318-429 (711)
395 3mez_B Mannose-specific lectin 24.6 2.9E+02 0.0098 22.5 10.4 22 347-369 60-82 (113)
396 3mvd_K Regulator of chromosome 22.0 6.5E+02 0.022 25.7 32.1 149 218-371 179-374 (423)
397 3pst_A Protein DOA1; protein d 21.8 7 0.00024 41.0 -3.3 88 429-516 47-141 (425)
398 4b19_A PEPA1; toxin, toxin apo 21.7 45 0.0015 20.2 1.6 13 524-536 16-28 (30)
399 1a12_A RCC1, regulator of chro 20.6 6.9E+02 0.024 25.5 27.9 148 218-371 164-365 (413)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-45 Score=425.05 Aligned_cols=364 Identities=16% Similarity=0.180 Sum_probs=297.5
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC----Cc
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD----TT 106 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D----g~ 106 (764)
.||...|++++| ||+|++||+|+.||+|+|||+.+++......+.+|...|.+++|+|++ .|++++.+ +.
T Consensus 56 ~~h~~~v~~~~~-----spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 56 TEHSHQTTVAKT-----SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CCCSSCEEEEEE-----CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred cCCCCceEEEEE-----CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 599999999999 899999999999999999999765555667889999999999999997 77777765 47
Q ss_pred EEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 107 LKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 107 V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
|++||. +.....+.+|...|.+++|+|.....|++|+.|++|++||..+.
T Consensus 131 v~~wd~---~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--------------------------- 180 (611)
T 1nr0_A 131 VFLFDT---GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--------------------------- 180 (611)
T ss_dssp EEETTT---CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---------------------------
T ss_pred EEEeeC---CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---------------------------
Confidence 999984 55677889999999999999544457999999999999997652
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec-------cCC
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR-------GHT 259 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-------~h~ 259 (764)
.....+.+|...|++++|+|+|++|++|+.|+.|++||+.+++.+..+. +|.
T Consensus 181 ---------------------~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 181 ---------------------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred ---------------------eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 2234577899999999999999999999999999999999999888884 799
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE-------------------------------------------
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS------------------------------------------- 296 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~------------------------------------------- 296 (764)
+.|.+++|+|+|++|++++.|++|++||+.+++++.+
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 9999999999999999999999999999988776543
Q ss_pred EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe-------------------------------------
Q 046871 297 YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC------------------------------------- 339 (764)
Q Consensus 297 l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~------------------------------------- 339 (764)
+.+|...|++++|+|++++|++++.|+.|++||+.+++....+
T Consensus 320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 3468899999999999999999999999999999876543221
Q ss_pred ----------------------------------------------ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 340 ----------------------------------------------TGEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 340 ----------------------------------------------~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
.+...+.+++|+|++ +++|+.|+.|++||+.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 112346789999999 89999999999999987
Q ss_pred CCCceeeecCCcceeccccccccccc-----cCCCCCcccCCCCC--Cc--ccc-CCCCceEeEEecCCcEEEEeeCCCc
Q 046871 372 RNPQKVFQRGGSFIAGNLSFSRARVS-----LEGSTPVSSRFKEP--NF--TIP-GIPGIVQHEILNNRRHVLTKDAAGS 441 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~~--~~--~i~-g~~~i~~~~~s~dg~~l~t~s~dG~ 441 (764)
+.........+...+.+++|+|+... .++...+|+..... .. ... +...|.+++|+|||++|+|++.||+
T Consensus 480 ~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 480 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc
Confidence 64322111233444568899986543 35555555443211 11 122 4556999999999999999999999
Q ss_pred EEEEEccccE
Q 046871 442 VKLWEITRGV 451 (764)
Q Consensus 442 V~lWdi~tg~ 451 (764)
|++||+.++.
T Consensus 560 v~lW~~~~~~ 569 (611)
T 1nr0_A 560 VIVWNMNKPS 569 (611)
T ss_dssp EEEEETTCTT
T ss_pred EEEEECCCcc
Confidence 9999998764
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.4e-43 Score=401.38 Aligned_cols=406 Identities=21% Similarity=0.334 Sum_probs=324.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||++.|+||+| ||||++||+|+.|++|+|||.. ++++.++.+|...|++++|+|++ +|++++.|++|+||
T Consensus 13 ~GH~~~V~~~a~-----spdg~~las~~~d~~v~iWd~~---~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 13 EAHSSSVRGVAF-----SPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEEE-----CCCCCEEEEEeCCCEEEEEECC---CCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 399999999999 8999999999999999999964 56789999999999999999997 89999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC-----------
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING----------- 179 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~----------- 179 (764)
|+ +++++..+.+|...|.+++|+ +++.+|++++.|+.+++|+................ ....+..
T Consensus 85 d~--~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 85 NR--NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV-WGVAFSPDGQTIASASDD 160 (577)
T ss_dssp ET--TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCE-EEEEECTTSSCEEEEETT
T ss_pred EC--CCCEEEEEECCCCCEEEEEEC-CCCCEEEEEcCCCceeecccccceeeeccCCCCce-eeeeeecCCccceecccc
Confidence 95 477889999999999999999 78999999999999999997653221110000000 0000000
Q ss_pred -------------------------CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 180 -------------------------SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 180 -------------------------~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
.........+...+.++.+.+|+. .+.....+.+|...|.+++|+|++++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC--CCcEEEEEecCCCCEEEEEECCCCCEEEE
Confidence 000011112334445566777764 34556677889999999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC
Q 046871 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314 (764)
Q Consensus 235 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~ 314 (764)
++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|+++
T Consensus 239 ~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 239 ASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp EETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSS
T ss_pred EeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCC
Confidence 999999999995 57888899999999999999999999999999999999996 5778889999999999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccc
Q 046871 315 HVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFS 392 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s 392 (764)
+|++++.|+.|++||+..........+...+.+++|+|++ +++++.|+.|++|+.. ++....+..+... +.+++|+
T Consensus 317 ~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~-v~~~~~s 394 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS-VRGVAFS 394 (577)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSC-EEEEEEC
T ss_pred EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCC-eEEEEEC
Confidence 9999999999999999877666666678899999999998 8899999999999964 5666666655443 4578888
Q ss_pred ccccc-----cCCCCCcccCCCCCCccccCC-CCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 393 RARVS-----LEGSTPVSSRFKEPNFTIPGI-PGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 393 ~~~~~-----~~~~~~~~~~~~~~~~~i~g~-~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
++... .++...+++........+.++ ..|..++|+||+++|++++.||.|++||. +++++..+
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~ 463 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTL 463 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE
Confidence 76432 345555554333333344444 45889999999999999999999999996 46666665
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-42 Score=401.84 Aligned_cols=365 Identities=14% Similarity=0.163 Sum_probs=296.2
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
.....+++.+.+++| ||||++|++++ ++.|++|++.+ +.....+.+|.+.|++++|+|++ +|++|+.|++|
T Consensus 12 ~~~~~~~g~~~~~~~-----spdg~~l~~~~-~~~v~l~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v 83 (611)
T 1nr0_A 12 SLPRTARGTAVVLGN-----TPAGDKIQYCN-GTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 83 (611)
T ss_dssp CCCCCCTTCCCCCEE-----CTTSSEEEEEE-TTEEEEEETTC--SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCcccCceeEEee-----CCCCCEEEeCC-CCEEEEecCCC--cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCE
Confidence 344567889999999 89999999998 56999999987 66788899999999999999998 89999999999
Q ss_pred EEecCCC-CCeeeeeccccCCceEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC
Q 046871 108 KTWNCSS-DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG----AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 108 ~vWd~~~-~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
+|||+.. .......+.+|.+.|.+++|+ +++.+|++++.+ +.|++||....
T Consensus 84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd~~~~----------------------- 139 (611)
T 1nr0_A 84 RIWDTTQTTHILKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTS----------------------- 139 (611)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCB-----------------------
T ss_pred EEeECCCCcceeeEeecccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEeeCCCC-----------------------
Confidence 9999743 233456788899999999999 788899888765 47888875321
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeccCCcC
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN 261 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 261 (764)
...+.+|...|++++|+|++. .|++|+.|+.|++||..+++.+..+.+|.+.
T Consensus 140 ---------------------------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~ 192 (611)
T 1nr0_A 140 ---------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 192 (611)
T ss_dssp ---------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred ---------------------------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCc
Confidence 123578999999999999986 6999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA-------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
|.+++|+|||++|++|+.|++|++||+.+++++..+. +|.+.|++++|+|++++|++++.|++|++||+.+++
T Consensus 193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 9999999999999999999999999999999998884 799999999999999999999999999999999876
Q ss_pred EEEEe--------------------------------------------ecCCCeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 335 SLLLC--------------------------------------------TGEHPILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 335 ~~~~~--------------------------------------------~~~~~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
.+..+ .|...|++++|+|++ |++++.|+.|++||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 55332 256689999999999 99999999999999
Q ss_pred CCCCCCceeeecCCcceeccccccccccc----cCCCCCcccCCCC----------------------------------
Q 046871 369 AEGRNPQKVFQRGGSFIAGNLSFSRARVS----LEGSTPVSSRFKE---------------------------------- 410 (764)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~---------------------------------- 410 (764)
+.+++....+...+...+.++.|++.... .++...++.....
T Consensus 353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence 99887766553333444445555543211 1111111111000
Q ss_pred --------CCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEE
Q 046871 411 --------PNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 411 --------~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~ 452 (764)
....++....+.+++|+|||++|++++.||+|++||+.++.+
T Consensus 433 ~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred eEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce
Confidence 001112234577899999999999999999999999987654
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-42 Score=380.08 Aligned_cols=281 Identities=25% Similarity=0.443 Sum_probs=261.5
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||.++|+|++| +|++.+|++|+.||+|+|||+.+ ++...++.+|.+.|.+++|++++ +|++|+.|++|++|
T Consensus 105 ~gh~~~V~~~~~-----~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 105 SGHRSPVTRVIF-----HPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp ECCSSCEEEEEE-----CSSSSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred cccCCcEEEEEE-----cCCCCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 389999999999 79999999999999999999998 67788999999999999999987 89999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
|+ ....++..+.+|...|.+++|+ +++++|++|+.|+.|++||+.++
T Consensus 178 d~-~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~------------------------------- 224 (410)
T 1vyh_C 178 DF-QGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTG------------------------------- 224 (410)
T ss_dssp ET-TSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTC-------------------------------
T ss_pred eC-CCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCC-------------------------------
Confidence 97 5578899999999999999999 78999999999999999999863
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
.....+.+|...|.++++++++.+|++|+.|+.|++||+++++....+.+|...|.+++|+|+
T Consensus 225 -----------------~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 225 -----------------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287 (410)
T ss_dssp -----------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred -----------------cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence 223446789999999999999999999999999999999999999999999999999999996
Q ss_pred --------------------CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 271 --------------------GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 271 --------------------g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
+.+|++|+.|++|++||+++++++.++.+|...|++++|+|++++|++|+.||.|++||+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 331 ATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 331 ~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
.+++.+..+. |...|++++|+|++ +++|+.|+.|++|++
T Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9988777665 67899999999998 999999999999986
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.2e-42 Score=393.18 Aligned_cols=350 Identities=23% Similarity=0.371 Sum_probs=306.1
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|...|.+++| +|++++|++++.||.|++||.. .+.+..+.+|...|++++|+|++ .+++++.|++|++|+
T Consensus 219 ~~~~~v~~~~~-----s~dg~~l~~~~~d~~i~~w~~~---~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 219 GHSSSVRGVAF-----SPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp CCSSCEEEEEE-----CTTSSCEEEEETTSCEEEECTT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCEEEEEE-----CCCCCEEEEEeCCCEEEEEeCC---CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 79999999999 7999999999999999999975 46688899999999999999997 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
. .++....+.+|...|.+++|+ +++.++++++.|+.|++||+...
T Consensus 291 ~--~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~-------------------------------- 335 (577)
T 2ymu_A 291 R--NGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQ-------------------------------- 335 (577)
T ss_dssp T--TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSC--------------------------------
T ss_pred C--CCcEEEEEecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCC--------------------------------
Confidence 5 467788899999999999999 78999999999999999998642
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
....+.+|...|.+++|+|++++|++|+.|+.|++||. +++.+..+.+|...|++++|+||+
T Consensus 336 -----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 336 -----------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp -----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS
T ss_pred -----------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC
Confidence 12335678899999999999999999999999999995 678888999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEee
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALH 351 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~s 351 (764)
++|++++.|+.|++||. +++.+.++..|...|++++|+|++++|++++.|+.|++||...........+..+|.+++|+
T Consensus 398 ~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEEC
T ss_pred CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEc
Confidence 99999999999999996 67888999999999999999999999999999999999997654444455578899999999
Q ss_pred CCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccc-----cCCCCCcccCCCCCCccccCCC-CceE
Q 046871 352 DDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVS-----LEGSTPVSSRFKEPNFTIPGIP-GIVQ 423 (764)
Q Consensus 352 pd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~~~~~i~g~~-~i~~ 423 (764)
|++ |++++.|+.|++|+. +++..+.+..|... +.+++|+|+... .++.+.+|+........+.|+. .|..
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 554 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC-EEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC-EEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEE
Confidence 999 889999999999995 56777777776554 457889886542 3566777765444445566654 5889
Q ss_pred eEEecCCcEEEEeeCCCcEEEEE
Q 046871 424 HEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 424 ~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
++|+|||++|+|++.||+|++||
T Consensus 555 ~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 555 VAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999997
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=364.35 Aligned_cols=289 Identities=21% Similarity=0.291 Sum_probs=258.8
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
..+|.+.|.+++|.+.. .+++.+|+||+.|++|+|||+..........+.+|...|.++.|++++ .+++++.|++|++
T Consensus 28 ~~~H~~~V~~v~~~~~~-~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNK-KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp TTSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cccCCCcEEEEEEecCC-CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 35899999999994211 124679999999999999999875445566789999999999999987 8999999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
||+ ..++++..+..|...+.+++|+ +++++|++++.|+.|++||++++.
T Consensus 107 Wd~-~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~----------------------------- 155 (321)
T 3ow8_A 107 WDL-ENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGK----------------------------- 155 (321)
T ss_dssp EET-TTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCS-----------------------------
T ss_pred EEC-CCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCc-----------------------------
Confidence 998 5678888888999999999999 789999999999999999998631
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
....+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|++++|+|
T Consensus 156 -------------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 216 (321)
T 3ow8_A 156 -------------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216 (321)
T ss_dssp -------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT
T ss_pred -------------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC
Confidence 2233556778899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEE
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQL 348 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l 348 (764)
++++|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|++++.|+.|++||+.+++++..+. +...|.++
T Consensus 217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296 (321)
T ss_dssp TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765 67899999
Q ss_pred EeeCCc--eEEEeCCCcEEEeeCC
Q 046871 349 ALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
+|+|++ |++++.|+.|++||..
T Consensus 297 ~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 297 KYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECTTSSEEEEEETTCCEEEEECC
T ss_pred EECCCCCEEEEEeCCCeEEEEeCC
Confidence 999998 9999999999999963
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-40 Score=354.21 Aligned_cols=279 Identities=20% Similarity=0.338 Sum_probs=252.4
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
||.+.|++++| +|++++|++|+.||+|++||+.+ ...+..+..|...|.+++|+|++ +|++++.|+.|++|+
T Consensus 53 gH~~~v~~~~~-----s~d~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 53 GHLAKIYAMHW-----GTDSRLLLSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CCSSCEEEEEE-----CTTSSEEEEEETTTEEEEEETTT--CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CCCCceEEEEE-----CCCCCEEEEEeCCCcEEEEECCC--CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999 79999999999999999999988 66788899999999999999997 899999999999999
Q ss_pred CCCCC---eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 112 CSSDG---TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 112 ~~~~~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+.... .....+.+|.+.|.++.|+ +++ .+++++.|+.|++||+.++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~~~----------------------------- 174 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFL-DDN-QIVTSSGDTTCALWDIETG----------------------------- 174 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEE-ETT-EEEEEETTSCEEEEETTTT-----------------------------
T ss_pred CccCCCcceeEEEecCCCccEEEEEEC-CCC-cEEEEECCCcEEEEECCCC-----------------------------
Confidence 85432 4556788999999999998 444 5889999999999999863
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
.....+.+|.+.|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus 175 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~ 235 (340)
T 1got_B 175 -------------------QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235 (340)
T ss_dssp -------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred -------------------cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence 2334567899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee--cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCe
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH--TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPI 345 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h--~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V 345 (764)
|++++|++|+.||+|++||+++++.+..+..+ ...|.+++|+|++++|++|+.||.|++||+.+++.+..+. |..+|
T Consensus 236 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v 315 (340)
T 1got_B 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence 99999999999999999999999888877632 3479999999999999999999999999999988877665 68899
Q ss_pred EEEEeeCCc--eEEEeCCCcEEEee
Q 046871 346 LQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 346 ~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
.+++|+|++ |++|+.|+.|++||
T Consensus 316 ~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 316 SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999998 99999999999996
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-40 Score=348.31 Aligned_cols=283 Identities=18% Similarity=0.288 Sum_probs=253.5
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|.+.|++++| +|++++|++|+.||+|++||+.+ +..+..+..|...|.++.|++++ .|++++.|++|++||
T Consensus 11 ~h~~~V~~~~f-----sp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 11 NRSDRVKGIDF-----HPTEPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp EECSCEEEEEE-----CSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEE-----CCCCCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 89999999999 89999999999999999999998 67788999999999999999986 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ ..++++..+.+|.+.|.+++|+ +++.+|++|+.|++|++||++++
T Consensus 84 ~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~-------------------------------- 129 (304)
T 2ynn_A 84 Y-NTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENN-------------------------------- 129 (304)
T ss_dssp T-TTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGT--------------------------------
T ss_pred C-CCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCC--------------------------------
Confidence 7 5678888999999999999999 78899999999999999999753
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCcCeEEEEEcC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLR-GHTDNIRSLLLDS 269 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp 269 (764)
......+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.....+. +|...+..+.|+|
T Consensus 130 ---------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 130 ---------------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp ---------------TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred ---------------cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE
Confidence 112234678999999999999 67899999999999999999887766654 5667899999987
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeE
Q 046871 270 --TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPIL 346 (764)
Q Consensus 270 --dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~ 346 (764)
++.+|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+. +...+.
T Consensus 195 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~ 274 (304)
T 2ynn_A 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274 (304)
T ss_dssp STTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEE
T ss_pred cCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999888776 467899
Q ss_pred EEEeeCCc---eEEEeCCCcEEEeeCCC
Q 046871 347 QLALHDDN---IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 347 ~l~~spd~---l~~~s~dg~I~iwd~~~ 371 (764)
+++++|++ +++++.++.+.+|++..
T Consensus 275 ~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 275 CIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEEECCCCCceEEEEecCCceEEEEecc
Confidence 99999986 46666677788888764
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-40 Score=365.42 Aligned_cols=286 Identities=21% Similarity=0.371 Sum_probs=259.5
Q ss_pred cceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 76 CSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
....+.+|.+.|++++|+|++ .|++|+.|++|++||+ ..+.....+.+|.+.|.+++|+ +++.+|++|+.|++|++|
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLW 177 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSCCCEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEc-CCCCEEEEEeCCCeEEEE
Confidence 356788999999999999996 8999999999999997 5578888999999999999999 789999999999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
|+.+. .....+.+|...|.+++|+|++++|++
T Consensus 178 d~~~~------------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~~l~s 209 (410)
T 1vyh_C 178 DFQGF------------------------------------------------ECIRTMHGHDHNVSSVSIMPNGDHIVS 209 (410)
T ss_dssp ETTSS------------------------------------------------CEEECCCCCSSCEEEEEECSSSSEEEE
T ss_pred eCCCC------------------------------------------------ceeEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 99763 223446789999999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC--
Q 046871 235 GGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT-- 312 (764)
Q Consensus 235 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd-- 312 (764)
|+.|+.|++||+++++++..+.+|...|.++.+++++++|++|+.|++|++||+.++++...+..|...|.+++|+|+
T Consensus 210 ~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289 (410)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCG
T ss_pred EeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ------------------CCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 313 ------------------FSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 313 ------------------~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
+.+|++|+.|+.|++||++++.++..+. |...|.+++|+|++ +++++.|+.|++||+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 6789999999999999999999887765 67889999999998 99999999999999988
Q ss_pred CCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEc
Q 046871 372 RNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi 447 (764)
+++...+..| ...|.+++|+|++.+|+|++.||+|++||+
T Consensus 370 ~~~~~~~~~h------------------------------------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 370 KRCMKTLNAH------------------------------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCCCEEEECC------------------------------------SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CceEEEEcCC------------------------------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8776665433 224678899999999999999999999986
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-40 Score=352.51 Aligned_cols=290 Identities=21% Similarity=0.332 Sum_probs=257.6
Q ss_pred CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.....++.+|.+.|.+++|+|++ +|++++.|++|++||+ ..+..+..+..|...|.+++|+ +++++|++|+.|+.|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEEC-TTSSEEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEEC-CCCCEEEEEeCCCeEE
Confidence 44577899999999999999997 8999999999999997 5577888889999999999999 7899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||+.+.... ......+.+|.+.|.++.|++++. +
T Consensus 123 iw~~~~~~~~--------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~-l 157 (340)
T 1got_B 123 IYNLKTREGN--------------------------------------------VRVSRELAGHTGYLSCCRFLDDNQ-I 157 (340)
T ss_dssp EEETTTCSBS--------------------------------------------CEEEEEEECCSSCEEEEEEEETTE-E
T ss_pred EEECccCCCc--------------------------------------------ceeEEEecCCCccEEEEEECCCCc-E
Confidence 9999753100 112234678999999999998764 8
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++++.++.+|...|++++|+|+
T Consensus 158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEeecC---CCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceec
Q 046871 313 FSHVYSGGRDLSLYLTDLATRESLLLCTGE---HPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAG 387 (764)
Q Consensus 313 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 387 (764)
+++|++|+.||.|++||+++++.+..+.+. ..|.+++|+|++ +++|+.|+.|++||+.+++....+.+|
T Consensus 238 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h------ 311 (340)
T 1got_B 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH------ 311 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC------
Confidence 999999999999999999999888777654 379999999999 889999999999999887765555432
Q ss_pred cccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 388 NLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 388 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
...|.+++|+|||++|+|++.||+|++||
T Consensus 312 ------------------------------~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 ------------------------------DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------------------------------SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------------------------------CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23467889999999999999999999997
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5e-40 Score=348.58 Aligned_cols=299 Identities=19% Similarity=0.375 Sum_probs=256.5
Q ss_pred CccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCC----CeeeeeccccCCceEEEEEecCCCcEEEEEeC
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSD----GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGL 147 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~----~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~ 147 (764)
..+..++.+|.++|++++|++++ +|++++.|++|++|++... +.++..+.+|...|.+++|+ +++.+|++|+.
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~ 85 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASW 85 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEET
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC-CCCCEEEEEeC
Confidence 34566789999999999999863 8999999999999997422 24567889999999999999 78999999999
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC
Q 046871 148 GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND 227 (764)
Q Consensus 148 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp 227 (764)
|++|++||+.++ .....+.+|...|.+++|+|
T Consensus 86 D~~v~~wd~~~~------------------------------------------------~~~~~~~~h~~~v~~~~~~~ 117 (319)
T 3frx_A 86 DKTLRLWDVATG------------------------------------------------ETYQRFVGHKSDVMSVDIDK 117 (319)
T ss_dssp TSEEEEEETTTT------------------------------------------------EEEEEEECCSSCEEEEEECT
T ss_pred CCEEEEEECCCC------------------------------------------------CeeEEEccCCCcEEEEEEcC
Confidence 999999999863 23345778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCeeeEEEeeec
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST------GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT 301 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd------g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~ 301 (764)
++.+|++|+.|+.|++||++ ++.+..+.+|...|.++.++|. +.+|++++.|++|++||++++++...+.+|.
T Consensus 118 ~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~ 196 (319)
T 3frx_A 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196 (319)
T ss_dssp TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC
T ss_pred CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC
Confidence 99999999999999999986 5678888999999999999985 4589999999999999999999999999999
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 302 DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 302 ~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
..|++++|+|++++|++|+.||.|++||+.+++.+..+.....|.+++|+|++ +++++.++.+++|+++.......+..
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCc
Confidence 99999999999999999999999999999999999998888999999999999 55555677799999986544333321
Q ss_pred CCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 381 GGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 381 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
... .....+...+..++|+|||++|++++.||.|++||+.++
T Consensus 277 ~~~----------------------------~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 277 EFA----------------------------GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCT----------------------------TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccc----------------------------ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 100 001122345788999999999999999999999999875
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=354.54 Aligned_cols=289 Identities=16% Similarity=0.178 Sum_probs=241.6
Q ss_pred CCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC---------CCCccceeecccccceeEEEEeCCCeEE
Q 046871 29 SDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD---------DVGSCSATFESHVDWVNDAVLVGDNTLV 99 (764)
Q Consensus 29 ~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~---------~~~~~~~~l~~h~~~V~~v~~s~d~~l~ 99 (764)
.....|...|++++| ||||++|++++ |+++++||... ...........|...|.+++|++++.|+
T Consensus 24 ~~~~~~~~~v~~~~f-----s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~ 97 (344)
T 4gqb_B 24 NAPACMERQLEAARY-----RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGIL 97 (344)
T ss_dssp CSCSSCCSEEEEEEE-----CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEE
T ss_pred CCcccccCCEEEEEE-----CCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEE
Confidence 344578888999999 89999999887 77888887321 0011122233467789999999999999
Q ss_pred EEeCCCcEEEecCCCCCeeee----eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 100 SCSSDTTLKTWNCSSDGTCIR----TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 100 s~s~Dg~V~vWd~~~~~~~~~----~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
+++.||+|+|||+.. ++.+. .+.+|.+.|.+++|+ +++++|++|+.|+.|++||+.++
T Consensus 98 ~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~---------------- 159 (344)
T 4gqb_B 98 VASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQ---------------- 159 (344)
T ss_dssp EEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTT----------------
T ss_pred EEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCC----------------
Confidence 999999999999854 44332 345899999999999 78999999999999999999863
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTIK 254 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~ 254 (764)
.....+.+|...|++++|++++ .+|++|+.|+.|++||+++++....
T Consensus 160 --------------------------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 207 (344)
T 4gqb_B 160 --------------------------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ 207 (344)
T ss_dssp --------------------------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE
T ss_pred --------------------------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee
Confidence 3345578899999999999987 4789999999999999999998887
Q ss_pred ec--cCCcCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeC
Q 046871 255 LR--GHTDNIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 255 l~--~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~ 330 (764)
+. .|...+.+++|+|+ +++|++|+.||+|++||+++++++.++.+|...|++++|+|++ ++|++|+.|++|++||+
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 74 45567999999995 5688999999999999999999999999999999999999998 57999999999999999
Q ss_pred CCCeEEEEeecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCC
Q 046871 331 ATRESLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 331 ~~~~~~~~~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~ 373 (764)
.+++.+....|...|++++|+|++ +++++.|++|++|++.+..
T Consensus 288 ~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999988887889999999999987 5678999999999998653
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=349.64 Aligned_cols=287 Identities=18% Similarity=0.269 Sum_probs=252.7
Q ss_pred ceeecccccceeEEEEeCC----C-eEEEEeCCCcEEEecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCe
Q 046871 77 SATFESHVDWVNDAVLVGD----N-TLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE 150 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d----~-~l~s~s~Dg~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~ 150 (764)
...+++|.+.|++++|+++ + .|++|+.|++|+||++.... .....+.+|...|.+++|+ +++.++++++.|+.
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~-~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDAH 103 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-SSSSEEEEEETTSE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC-CCCCEEEEEeCCCc
Confidence 4556789999999999874 2 79999999999999974322 2345788999999999999 78899999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|++||+.++ .....+..+...+.+++|+|+++
T Consensus 104 i~lWd~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~spdg~ 135 (321)
T 3ow8_A 104 IRLWDLENG------------------------------------------------KQIKSIDAGPVDAWTLAFSPDSQ 135 (321)
T ss_dssp EEEEETTTT------------------------------------------------EEEEEEECCTTCCCCEEECTTSS
T ss_pred EEEEECCCC------------------------------------------------CEEEEEeCCCccEEEEEECCCCC
Confidence 999999863 22234556777889999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEc
Q 046871 231 LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST 310 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~s 310 (764)
+|++|+.|+.|++||+++++....+..|...|.+++|+|++++|++|+.|+.|++||+++++++.++.+|...|.+++|+
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215 (321)
T ss_dssp EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC
T ss_pred EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceec
Q 046871 311 PTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAG 387 (764)
Q Consensus 311 pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 387 (764)
|++++|++|+.|+.|++||+++++....+. |...|.+++|+|++ |++++.|+.|++||+.+++++..+..+
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h------ 289 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH------ 289 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------
T ss_pred CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC------
Confidence 999999999999999999999988877665 67789999999998 999999999999999987766555322
Q ss_pred cccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 388 NLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 388 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
...|..++|++|+++|++++.||+|++||..
T Consensus 290 ------------------------------~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 290 ------------------------------QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ------------------------------SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ------------------------------CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 2347788999999999999999999999963
No 14
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.1e-40 Score=410.31 Aligned_cols=414 Identities=19% Similarity=0.280 Sum_probs=338.6
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V~ 108 (764)
.+|...|++++| +|++++|++|+.||.|++||+.+ ++.+..+.+|...|.+++|+++ + .+++++.|+.|+
T Consensus 654 ~~h~~~v~~~~~-----s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 654 KAHEDEVLCCAF-----SSDDSYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp CCCSSCEEEEEE-----CTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred ccCCCCEEEEEE-----ecCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 489999999999 89999999999999999999998 6788999999999999999985 3 789999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC--------cCCcCccccCC
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM--------EDDCSTGINGS 180 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~--------~~~~~~~~~~~ 180 (764)
+||+ ..+.+...+.+|.+.|.+++|+ +++.++++++.||.|++||+.++.......... .......+...
T Consensus 727 vwd~-~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 727 LWDL-NQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEET-TSSSEEEEECCCSSCEEEEEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEC-CCcchhheecCCCCCEEEEEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 9998 5678888999999999999999 789999999999999999998754321110000 00000001111
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD 260 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 260 (764)
...... .....+..+.+.+|+............+|...|.+++|+|++.++++++.|+.|++||+.+++.+..+.+|.+
T Consensus 805 ~~s~dg-~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 805 SWSADG-DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp CBCTTS-SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred EECCCC-CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 111111 1222334567777777666555555668999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCC---------------------------------------------------
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLG--------------------------------------------------- 289 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~--------------------------------------------------- 289 (764)
.|.+++|+|+|++|++++.||+|++||+.
T Consensus 884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 99999999999999999999999888742
Q ss_pred ----------------------------CCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec
Q 046871 290 ----------------------------QQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG 341 (764)
Q Consensus 290 ----------------------------~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 341 (764)
+++.+..+.+|...|++++|+|++++|++++.||.|++||+.+++......+
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence 2334455567889999999999999999999999999999999998888888
Q ss_pred CCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccccccc-----ccCCCCCcccCCC-CCCcc
Q 046871 342 EHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARV-----SLEGSTPVSSRFK-EPNFT 414 (764)
Q Consensus 342 ~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~~~~~~-~~~~~ 414 (764)
...|.+++|++++ +++++.|+.|++||+.+++....+..+... +.+++|+++.. +.++...+|+... .+...
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT-VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC-CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc-EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 9999999999999 999999999999999999999888876654 45788888643 3456677765543 33445
Q ss_pred ccCCC-CceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 415 IPGIP-GIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 415 i~g~~-~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
+.++. .|.+++|+|||++|++++.||.|++||+.+|+++..+
T Consensus 1123 l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 55544 5899999999999999999999999999999988776
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-40 Score=361.27 Aligned_cols=292 Identities=22% Similarity=0.363 Sum_probs=254.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.||.+.|+|++| +|++++|+||+.||+|+|||+.+ .+....+..|...|.+++|+|++ +|++++.|+.|++|
T Consensus 63 ~gH~~~V~~~~~-----sp~~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 63 QGHSGKVYSLDW-----TPEKNWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CCCSSCEEEEEE-----CTTSSCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred cccccEEEEEEE-----cCCCCEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 399999999999 89999999999999999999988 67788999999999999999997 89999999999999
Q ss_pred cCCCC------CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 111 NCSSD------GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 111 d~~~~------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
++... ......+.+|.+.|.++.|.|.++..|++|+.|++|++||+.++......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~------------------- 196 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF------------------- 196 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE-------------------
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe-------------------
Confidence 97432 12345678999999999999666788999999999999999874221100
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCceeEEeccCCcCe
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPR-TGSKTIKLRGHTDNI 262 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~-~~~~~~~l~~h~~~V 262 (764)
......+|...|.+++|++ ++++|++|+.|+.|++||++ .++.+..+.+|.+.|
T Consensus 197 ------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v 252 (380)
T 3iz6_a 197 ------------------------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI 252 (380)
T ss_dssp ------------------------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC
T ss_pred ------------------------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe
Confidence 0011257889999999987 88999999999999999998 457788999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecC-------ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTD-------SVWALASTPTFSHVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~-------~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
.+++|+|++++|++|+.|++|++||+++++++..+..+.. .|++++|+|++++|++|+.||.|++||+..++.
T Consensus 253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence 9999999999999999999999999999999988876533 489999999999999999999999999999887
Q ss_pred EEEe-----ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 336 LLLC-----TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 336 ~~~~-----~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
+..+ .|...|.+++|+|++ |++|+.|+.|++|++...+
T Consensus 333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 7665 367889999999999 9999999999999997654
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-40 Score=354.18 Aligned_cols=292 Identities=15% Similarity=0.182 Sum_probs=243.0
Q ss_pred eCCCCCCCCCCeeEEEeecccccCCCcEEEEEeC------CCcEEEEeCCCCCC--ccceeecccccceeEEEEeCCCeE
Q 046871 27 NNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSR------DGTLKRWSLADDVG--SCSATFESHVDWVNDAVLVGDNTL 98 (764)
Q Consensus 27 ~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~------Dg~I~iWd~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~l 98 (764)
+.....+|...|++++| ||||++|++|+. ||.|++|+..++.. .......+|...|.+++|+|++.+
T Consensus 34 p~~~p~~H~~~V~~v~f-----SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~ 108 (357)
T 4g56_B 34 PVTAPACMEVQIGAVRY-----RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI 108 (357)
T ss_dssp ------CCCSEEEEEEE-----CSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE
T ss_pred CCCCcccccCCEEEEEE-----CCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE
Confidence 33344589999999999 899999999997 78899999876432 233445678999999999999999
Q ss_pred EEEeCCCcEEEecCCCCCeee----eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 99 VSCSSDTTLKTWNCSSDGTCI----RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~~~~~~----~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++++.||+|+|||+.. ++.. ....+|.+.|.+++|+ +++++|++|+.|+.|++||++++
T Consensus 109 l~~s~dg~v~lWd~~~-~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~--------------- 171 (357)
T 4g56_B 109 LVASDSGAVELWEILE-KESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQK--------------- 171 (357)
T ss_dssp EEEETTSCEEEC---------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTT---------------
T ss_pred EEEECCCEEEEeeccc-cceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCC---------------
Confidence 9999999999999844 3332 2344799999999999 78999999999999999999863
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
.....+.+|...|++++|++++. ++++++.|+.|++||+++++...
T Consensus 172 ---------------------------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 172 ---------------------------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp ---------------------------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred ---------------------------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 23345678999999999999874 78999999999999999988766
Q ss_pred Ee--ccCCcCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEe
Q 046871 254 KL--RGHTDNIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTD 329 (764)
Q Consensus 254 ~l--~~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd 329 (764)
.+ ..|...+.+++|+|+ +.+|++|+.|+.|++||+++++++.++.+|...|++++|+|++ ++|++|+.|++|++||
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 54 456778999999997 4688999999999999999999999999999999999999987 5789999999999999
Q ss_pred CCCCeEEEEeecCCCeEEEEeeC-Cc--eEEEeCCCcEEEeeCCCCC
Q 046871 330 LATRESLLLCTGEHPILQLALHD-DN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~V~~l~~sp-d~--l~~~s~dg~I~iwd~~~~~ 373 (764)
+++++.+..+.|...|++++|+| ++ |++++.|++|++|++....
T Consensus 299 ~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 299 ADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99999999888999999999998 55 8899999999999997643
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-39 Score=347.12 Aligned_cols=280 Identities=19% Similarity=0.337 Sum_probs=251.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
||.+.|+|++| +|++++|+||+.||+|++||..+ ......+..|..+|.+++|+|++ .+++++.|+.+++|+
T Consensus 62 gH~~~V~~~~~-----s~d~~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 62 GHGNKVLCMDW-----CKDKRRIVSSSQDGKVIVWDSFT--TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CCSSCEEEEEE-----CTTSSEEEEEETTSEEEEEETTT--CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred CCCCeEEEEEE-----CCCCCEEEEEeCCCeEEEEECCC--CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 99999999999 79999999999999999999987 56677888899999999999997 899999999999999
Q ss_pred CCCC-----CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 112 CSSD-----GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 112 ~~~~-----~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+... ......+..|.+.|.+++|+ +++..|++++.|++|++||++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~--------------------------- 186 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESG--------------------------- 186 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTC---------------------------
T ss_pred EeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCC---------------------------
Confidence 7432 13455677899999999999 77889999999999999999863
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND--SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRS 264 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp--~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 264 (764)
.....+.+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+.+|...|++
T Consensus 187 ---------------------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~ 245 (354)
T 2pbi_B 187 ---------------------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245 (354)
T ss_dssp ---------------------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred ---------------------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEE
Confidence 23345678999999999987 5789999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec--CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-c
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT--DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-G 341 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~--~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~ 341 (764)
++|+|++++|++|+.|++|++||++.++.+..+..+. ..+.+++|+|++.+|++|+.|+.|++||+.+++.+..+. |
T Consensus 246 v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h 325 (354)
T 2pbi_B 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC
Confidence 9999999999999999999999999998887776443 468999999999999999999999999999888776654 7
Q ss_pred CCCeEEEEeeCCc--eEEEeCCCcEEEee
Q 046871 342 EHPILQLALHDDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 342 ~~~V~~l~~spd~--l~~~s~dg~I~iwd 368 (764)
...|++++|+|++ |++++.|+.|++|+
T Consensus 326 ~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 8899999999999 99999999999996
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-39 Score=341.50 Aligned_cols=283 Identities=24% Similarity=0.405 Sum_probs=250.0
Q ss_pred CCCCCCeeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCCCC---CccceeecccccceeEEEEeCCC-eEEEEeCCCc
Q 046871 32 TKHCAGINCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLADDV---GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTT 106 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~ 106 (764)
.||.+.|++++| +|+ +++|++|+.|++|++||+.... +..+..+.+|...|.+++|++++ +|++++.|++
T Consensus 14 ~gH~~~V~~l~~-----~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 14 EGHNGWVTSLAT-----SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp CCCSSCEEEEEE-----CSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccceEEEEEc-----cCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 499999999999 665 4899999999999999986432 23467889999999999999997 8999999999
Q ss_pred EEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 107 LKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 107 V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
|++||+ ..++++..+.+|...|.+++|+ +++.+|++|+.|+.|++||++..
T Consensus 89 v~~wd~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~~--------------------------- 139 (319)
T 3frx_A 89 LRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQ--------------------------- 139 (319)
T ss_dssp EEEEET-TTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTSC---------------------------
T ss_pred EEEEEC-CCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCC---------------------------
Confidence 999998 5688889999999999999999 78999999999999999998641
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCceeEEeccCCc
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS------GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD 260 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~------g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 260 (764)
....+.+|...|.+++++|. +..|++++.|+.|++||+++++....+.+|..
T Consensus 140 ----------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~ 197 (319)
T 3frx_A 140 ----------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197 (319)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS
T ss_pred ----------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC
Confidence 22346788999999999984 45899999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 340 (764)
.|.+++|+|++++|++|+.||+|++||+.+++++.++.. ...|.+++|+|++.+|++++.+ .+++|++..+..+..+.
T Consensus 198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccC
Confidence 999999999999999999999999999999999999875 4689999999999999988755 59999999877665543
Q ss_pred ---------cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 341 ---------GEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 341 ---------~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
+...+.+++|+|++ |++|+.|+.|++|++.++
T Consensus 276 ~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 24568999999999 899999999999998653
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-39 Score=346.20 Aligned_cols=292 Identities=16% Similarity=0.271 Sum_probs=255.9
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFI 153 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~i 153 (764)
....++.+|...|++++|+|++ +|++++.|++|++||. ..+.....+..|...|.+++|+ +++.++++|+.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~s-p~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYA-PSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEEC-TTSSEEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEEC-CCCCEEEEeeCCCCEEE
Confidence 4577889999999999999997 8999999999999997 4567777888899999999999 78999999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
|++....... .......+..|...|.+++|+|++..|+
T Consensus 133 ~~~~~~~~~~------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 170 (354)
T 2pbi_B 133 YPLTFDKNEN------------------------------------------MAAKKKSVAMHTNYLSACSFTNSDMQIL 170 (354)
T ss_dssp EECCCCTTCC------------------------------------------SGGGCEEEEECSSCEEEEEECSSSSEEE
T ss_pred EEEecccccc------------------------------------------ccccceeeeccCCcEEEEEEeCCCCEEE
Confidence 9986531100 0111234567899999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS--TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
+++.|+.|++||+++++.+..+.+|...|.++.|+| ++++|++|+.||+|++||+++++++..+..|...|++++|+|
T Consensus 171 t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 999999999999999999999999999999999987 578999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeecC---CCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCccee
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTGE---HPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIA 386 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 386 (764)
++.+|++|+.|++|++||++.++.+..+... ..+.+++|+|++ +++++.|+.|++||+.+++....+.+|
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h----- 325 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH----- 325 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-----
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-----
Confidence 9999999999999999999998877766543 478999999999 888999999999999887655444322
Q ss_pred ccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 387 GNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 387 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
...|..++|+|||++|++++.||+|++|+
T Consensus 326 -------------------------------~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 -------------------------------ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------------------------------SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------------------------------CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 23477889999999999999999999996
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=346.82 Aligned_cols=294 Identities=20% Similarity=0.285 Sum_probs=244.8
Q ss_pred CCCCC-CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCcccee-ecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 32 TKHCA-GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSAT-FESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~-~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~-l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
.+|.. .|.+++| +|+|++||+|+.||+|+|||+.++...+... ..+|...|.+++|+|++ +|++++.|++|+
T Consensus 12 ~~h~~~~v~~l~~-----sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 12 PAHPDSRCWFLAW-----NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp CCSTTSCEEEEEE-----CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCCCcEEEEEE-----CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 38988 9999999 8999999999999999999998743222232 36899999999999997 899999999999
Q ss_pred EecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 109 TWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 109 vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
+|++.... .++..+.+|.+.|.+++|+ +++++|++|+.|+.|++||+.....
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~-------------------------- 139 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDE-------------------------- 139 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSC--------------------------
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCC--------------------------
Confidence 99974432 4677899999999999999 7899999999999999999975310
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeccCCcCeEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSL 265 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l 265 (764)
......+.+|...|.+++|+|++++|++|+.|+.|++||.++++ ....+.+|...|.++
T Consensus 140 -------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l 200 (345)
T 3fm0_A 140 -------------------YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200 (345)
T ss_dssp -------------------EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred -------------------eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE
Confidence 11223467889999999999999999999999999999998875 456889999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCC---------------CeeeEEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEe
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQ---------------QRCIHSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTD 329 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~---------------~~~~~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd 329 (764)
+|+|+|++|++|+.|++|++||... .+++.++.+ |...|++++|+|++..|++++.|+.|++|+
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999632 244556655 888999999999999999999999999999
Q ss_pred CCCCeE--------EE-E-eecCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCce
Q 046871 330 LATRES--------LL-L-CTGEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQK 376 (764)
Q Consensus 330 ~~~~~~--------~~-~-~~~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~ 376 (764)
...+.. .. . ..|...|++++|+|++ |++++.||.|++|++.+++...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 875421 11 1 1367889999999985 8889999999999998876543
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.4e-40 Score=356.76 Aligned_cols=313 Identities=21% Similarity=0.295 Sum_probs=264.5
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCc
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSN 140 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~ 140 (764)
..+..|+... ..+..++.+|.+.|++++|+|++ +|++|+.|++|+|||+ ..+.....+..|...|.+++|+ ++++
T Consensus 46 ~~~~~~~~~~--~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s-~~g~ 121 (380)
T 3iz6_a 46 RTAVSFNPTD--LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFA-PNGQ 121 (380)
T ss_dssp GGCCCCCCCC--CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEEC-TTSS
T ss_pred ccccccccce--eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEEC-CCCC
Confidence 3445566665 67788999999999999999997 8999999999999997 5678888999999999999999 7899
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcE
Q 046871 141 IVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESV 220 (764)
Q Consensus 141 ~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V 220 (764)
+|++|+.|+.|++||+.+...... .......+.+|.+.|
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~-----------------------------------------~~~~~~~~~gh~~~v 160 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDG-----------------------------------------NMPVSRVLTGHKGYA 160 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCC-----------------------------------------SSTTCCBCCCCSSCC
T ss_pred EEEEeeCCCcEEEEECCCCccccC-----------------------------------------CccceeeccCCCcce
Confidence 999999999999999975321100 011123467899999
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEe-----ccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCe
Q 046871 221 YALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKL-----RGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLG-QQR 292 (764)
Q Consensus 221 ~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~-~~~ 292 (764)
.+++|.|+ +..|++|+.|+.|++||+++++.+..+ .+|...|.+++|++ ++++|++|+.|++|++||++ .++
T Consensus 161 ~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 99999996 457999999999999999999988877 67999999999987 88999999999999999998 567
Q ss_pred eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC--------CCeEEEEeeCCc--eEEEeCCC
Q 046871 293 CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE--------HPILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 293 ~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--------~~V~~l~~spd~--l~~~s~dg 362 (764)
++.++.+|.+.|++++|+|++++|++|+.||+|++||++++..+..+... ..|++++|+|++ +++|+.|+
T Consensus 241 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 88999999999999999999999999999999999999999988776532 248999999999 88899999
Q ss_pred cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcE
Q 046871 363 SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSV 442 (764)
Q Consensus 363 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V 442 (764)
.|++||+..++....+... ...+...|.+++|+|||++|+||+.||+|
T Consensus 321 ~i~vwd~~~~~~~~~~~~~--------------------------------~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLNLGTL--------------------------------QNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CEEEEETTTCCEEEEECCS--------------------------------CSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred CEEEEECCCCceEEEEecc--------------------------------cCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 9999999877654433210 00123458899999999999999999999
Q ss_pred EEEEccccE
Q 046871 443 KLWEITRGV 451 (764)
Q Consensus 443 ~lWdi~tg~ 451 (764)
++|++..++
T Consensus 369 ~iW~~~~~~ 377 (380)
T 3iz6_a 369 KIWAFSGHR 377 (380)
T ss_dssp EEEECCSSS
T ss_pred EEEecCCCc
Confidence 999998654
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-40 Score=362.45 Aligned_cols=370 Identities=17% Similarity=0.188 Sum_probs=282.4
Q ss_pred CCCCeeEEEeecccccCCCc-EEEEE----------eCCCcEEEEeCCCCCCc-cceeecccccceeEEEEeCCC-eEEE
Q 046871 34 HCAGINCLAVLKSSVSNGVD-YLFTG----------SRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVLVGDN-TLVS 100 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~-~L~sg----------s~Dg~I~iWd~~~~~~~-~~~~l~~h~~~V~~v~~s~d~-~l~s 100 (764)
|...|.+++| +|+++ +|++| +.||.|++||+.++... .+.. ..|...|.+++|+|++ +|++
T Consensus 11 ~~~~v~~~~~-----sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 11 EFSRTATFAW-----SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp EEEESCBCCB-----CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEE
T ss_pred hhhhcceEee-----CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEE
Confidence 4457888888 89987 99999 89999999999874322 3333 3588999999999997 8999
Q ss_pred EeCCCcEEEecCCC---CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 101 CSSDTTLKTWNCSS---DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 101 ~s~Dg~V~vWd~~~---~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
++.|+.|++|++.. .......+.+|...|.+++|+|.++.+|++++.|+.|++||+.+.........
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------- 154 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT---------- 154 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC----------
T ss_pred EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc----------
Confidence 99999999999854 23578888999999999999954489999999999999999987531100000
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEec
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKLR 256 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l~ 256 (764)
.........|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.
T Consensus 155 -----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 155 -----------------------------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp -----------------------------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred -----------------------------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence 0011124568889999999998 7899999999999999999999998888
Q ss_pred cC------CcCeEEEEEcCCC-CEEEEEeCCC---cEEEEeCCCC-eeeEEEe-eecCceEEEEEcC-CCCEEEEecCCC
Q 046871 257 GH------TDNIRSLLLDSTG-RYCLSGSSDS---MIRLWDLGQQ-RCIHSYA-VHTDSVWALASTP-TFSHVYSGGRDL 323 (764)
Q Consensus 257 ~h------~~~V~~l~~spdg-~~l~sgs~Dg---~I~iwdl~~~-~~~~~l~-~h~~~V~~l~~sp-d~~~l~sgs~Dg 323 (764)
.| ...|.+++|+|++ .++++++.|+ .|++||++++ .++..+. +|...|++++|+| ++.+|++++.||
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 76 7899999999997 6899999998 9999999986 6778888 8999999999999 999999999999
Q ss_pred cEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeeec-CCcceecccccccccccc
Q 046871 324 SLYLTDLATRESLLLCT-GEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQR-GGSFIAGNLSFSRARVSL 398 (764)
Q Consensus 324 ~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~ 398 (764)
.|++||+.+++.+..+. +...|.+++|+|++ +++++.|+.|++|++........... ..........+.+.....
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSRE 365 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccc
Confidence 99999999998887776 57889999999986 88888999999999988765443321 000000000111100000
Q ss_pred CCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 399 EGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
....... .... ....-....+..++|++||++|++++.||.|+|||+.+.
T Consensus 366 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 366 ESKEKPS-VFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -CCSCCC-SSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccc-cccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0000000 0011 011112344668999999999999999999999999864
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-38 Score=339.68 Aligned_cols=319 Identities=21% Similarity=0.345 Sum_probs=258.0
Q ss_pred EEeCCCc--EEEEeCCCCCCccceeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCC----eeeeeccccCCc
Q 046871 57 TGSRDGT--LKRWSLADDVGSCSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDG----TCIRTLRQHSDY 128 (764)
Q Consensus 57 sgs~Dg~--I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~----~~~~~l~~h~~~ 128 (764)
+|...|+ +.++...+.+..+..+|++|.+.|++|+|+|+ + +|+||+.|++|+|||+.... .+...+.+|...
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC
Confidence 3433454 34444444446667789999999999999997 4 89999999999999985432 356778899999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
|.+++|+ +++.+|++++.|+.|++|+.... .
T Consensus 89 V~~~~~s-~dg~~l~s~~~d~~i~~~~~~~~------------------------------------------------~ 119 (340)
T 4aow_A 89 VSDVVIS-SDGQFALSGSWDGTLRLWDLTTG------------------------------------------------T 119 (340)
T ss_dssp EEEEEEC-TTSSEEEEEETTSEEEEEETTTT------------------------------------------------E
T ss_pred EEEEEEC-CCCCEEEEEcccccceEEeeccc------------------------------------------------c
Confidence 9999999 78999999999999999998763 1
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeccCCcCeEEEEEcCCC--CEEEEEeCCCcEEE
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK-TIKLRGHTDNIRSLLLDSTG--RYCLSGSSDSMIRL 285 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~sgs~Dg~I~i 285 (764)
.......+...+..+.+++++++|++|+.|+.+++||...... ...+.+|...+..++|++++ .++++++.|+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 2233455677888999999999999999999999999976644 44567899999999999865 57889999999999
Q ss_pred EeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcE
Q 046871 286 WDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSV 364 (764)
Q Consensus 286 wdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I 364 (764)
||+++++++..+.+|.+.|++++|+|++++|++|+.||.|++||+.+.+.+..+.+...|.+++|+|++ +++++.|+.|
T Consensus 200 ~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i 279 (340)
T 4aow_A 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI 279 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEE
T ss_pred EECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8889999999
Q ss_pred EEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEE
Q 046871 365 HRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKL 444 (764)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~l 444 (764)
++||++++.....+...... .....+...|.+++|+|||++|+|++.||.|+|
T Consensus 280 ~iwd~~~~~~~~~~~~~~~~---------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 280 KIWDLEGKIIVDELKQEVIS---------------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp EEEETTTTEEEEEECCC----------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCCCeEEEecccccee---------------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 99999887655544321100 001123456899999999999999999999999
Q ss_pred EEccccE
Q 046871 445 WEITRGV 451 (764)
Q Consensus 445 Wdi~tg~ 451 (764)
||+.+|.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9999986
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-39 Score=353.58 Aligned_cols=355 Identities=16% Similarity=0.144 Sum_probs=275.6
Q ss_pred CCCCCeeEEEeecccccCCCc-EEEEEeCCCcEEEEeC----CCCCC----ccceeecc----------cccceeEEEEe
Q 046871 33 KHCAGINCLAVLKSSVSNGVD-YLFTGSRDGTLKRWSL----ADDVG----SCSATFES----------HVDWVNDAVLV 93 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~-~L~sgs~Dg~I~iWd~----~~~~~----~~~~~l~~----------h~~~V~~v~~s 93 (764)
.|.+.|+|++| +|+++ +|++|+.||.|++||+ .++.. .....+.. |...|.+++|+
T Consensus 43 ~~~~~v~~~~~-----s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 43 VKLDNIVSSTW-----NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EECSCCSEEEE-----CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eccCceEEEEE-----CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 46799999999 79999 9999999999999999 76321 02333333 68899999999
Q ss_pred CCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCC
Q 046871 94 GDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDD 172 (764)
Q Consensus 94 ~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~ 172 (764)
|++ +|++++.|+.|++|| ..+..+..+..|...|.+++|+ +++.+|++++.|+.|++||+.++............
T Consensus 118 ~~~~~l~~~~~dg~i~i~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~- 193 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFELKETG- 193 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE--TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCCCEEEEEeCCCeEEEEe--CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC-
Confidence 997 899999999999999 4577888899999999999999 78999999999999999999864322110000000
Q ss_pred cCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 046871 173 CSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT 252 (764)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~ 252 (764)
...............+.+++|++++ .+++++.++.|++||+++++.+
T Consensus 194 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~ 240 (425)
T 1r5m_A 194 --------------------------------GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPT 240 (425)
T ss_dssp --------------------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCS
T ss_pred --------------------------------ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCcee
Confidence 0000000111223338889999874 6889999999999999999999
Q ss_pred EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 253 IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 253 ~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
..+..|...|.+++|+|++++|++++.|+.|++||+.+++++..+..|...|.+++|+|++ ++++++.|+.|++||+.+
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCce-eeecCCcceeccccccccccccCCCCCcccCC
Q 046871 333 RESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQK-VFQRGGSFIAGNLSFSRARVSLEGSTPVSSRF 408 (764)
Q Consensus 333 ~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 408 (764)
++.+..+. +..+|.+++|+|++ +++++.|+.|++|++.++.... .+........ .+ ..
T Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~ 381 (425)
T 1r5m_A 320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL-----NP-------------LP 381 (425)
T ss_dssp TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------------C-------------EE
T ss_pred CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccccc-----Cc-------------cc
Confidence 99887776 47899999999998 8889999999999997654211 1111000000 00 00
Q ss_pred CCCCccccCC--C-CceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 409 KEPNFTIPGI--P-GIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 409 ~~~~~~i~g~--~-~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
......+.++ . .|..++|++|+++|++++.||.|++||+.
T Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 382 IPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred chhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 1112233333 3 79999999999999999999999999985
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-38 Score=339.32 Aligned_cols=303 Identities=18% Similarity=0.278 Sum_probs=248.1
Q ss_pred ccceeecccccceeEEEE-----eC-CC-eEEEEeCCCcEEEecCCCC------CeeeeeccccCCceEEEEEecCCCcE
Q 046871 75 SCSATFESHVDWVNDAVL-----VG-DN-TLVSCSSDTTLKTWNCSSD------GTCIRTLRQHSDYVTCLAAAEKNSNI 141 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~-----s~-d~-~l~s~s~Dg~V~vWd~~~~------~~~~~~l~~h~~~V~~l~~~p~~~~~ 141 (764)
.+...+.+|.+.|++++| ++ ++ +|++|+.|++|++||+... +.+...+.+|...|.+++|+ +++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~-~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS-QENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC-SSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC-CCCCE
Confidence 446788999999999999 65 65 8999999999999997432 24567788999999999999 78999
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEE
Q 046871 142 VASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVY 221 (764)
Q Consensus 142 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~ 221 (764)
+++|+.|++|++||++++ .....+.+|...|+
T Consensus 91 l~s~s~D~~v~lwd~~~~------------------------------------------------~~~~~~~~h~~~v~ 122 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTG------------------------------------------------TTYKRFVGHQSEVY 122 (343)
T ss_dssp EEEEETTSEEEEEETTSS------------------------------------------------CEEEEEECCCSCEE
T ss_pred EEEEcCCCcEEEEECCCC------------------------------------------------cEEEEEcCCCCcEE
Confidence 999999999999999863 22344678999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec---cCCcCeEEEEEcCCC----------CEEEEEeCCCcEEEEeC
Q 046871 222 ALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR---GHTDNIRSLLLDSTG----------RYCLSGSSDSMIRLWDL 288 (764)
Q Consensus 222 ~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg----------~~l~sgs~Dg~I~iwdl 288 (764)
+++|+|++++|++|+.|+.|++||+.. .....+. +|...|.+++|+|++ .+|++++.|++|++||
T Consensus 123 ~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd- 200 (343)
T 2xzm_R 123 SVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN- 200 (343)
T ss_dssp EEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-
T ss_pred EEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-
Confidence 999999999999999999999999974 3333333 788999999999987 7899999999999999
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC-CCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEE
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA-TRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHR 366 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~i 366 (764)
...+....+..|...|.+++|+|++++|++|+.||.|++||+. .......+.+...|.+++|+|++ +++++.|+.|++
T Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~i 280 (343)
T 2xzm_R 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKI 280 (343)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEE
T ss_pred CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEE
Confidence 4677888899999999999999999999999999999999994 44455556667789999999999 777788999999
Q ss_pred eeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEE
Q 046871 367 WPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWd 446 (764)
|++.+++......... .+ .. .......+...+..++|+|+|++|++|+.||.|++||
T Consensus 281 w~~~~~~~~~~~~~~~---------~~-------------~~-~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 281 FNLMTQSKAPVCTIEA---------EP-------------IT-KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EESSSCCSCSEEECCC---------CS-------------GG-GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred EEeCCCCCCceEEeec---------Cc-------------ch-hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 9998766543211000 00 00 0000011234588999999999999999999999999
Q ss_pred ccccE
Q 046871 447 ITRGV 451 (764)
Q Consensus 447 i~tg~ 451 (764)
+.+|+
T Consensus 338 ~~~g~ 342 (343)
T 2xzm_R 338 FETSA 342 (343)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 98875
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.9e-38 Score=329.86 Aligned_cols=289 Identities=27% Similarity=0.510 Sum_probs=254.8
Q ss_pred eeEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE
Q 046871 20 KRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL 98 (764)
Q Consensus 20 ~~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l 98 (764)
..+.+.+. ||...|++++| +|++++|++|+.||.|++|++.+ ++....+.+|...|.+++|+|++ +|
T Consensus 13 ~~~~~~~~-----gh~~~v~~~~~-----s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 13 YALKFTLA-----GHTKAVSSVKF-----SPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp CEEEEEEC-----CCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ceeEEEEc-----ccCCcEEEEEE-----CCCCCEEEEeeCCCeEEEEeCCC--cccchhhccCCCceEEEEEcCCCCEE
Confidence 34555555 99999999999 79999999999999999999987 66788899999999999999997 89
Q ss_pred EEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 99 VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
++++.|+.|++||+ ..++++..+.+|...|.+++|+ +++++|++|+.|+.|++||++++
T Consensus 81 ~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~------------------- 139 (312)
T 4ery_A 81 VSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTG------------------- 139 (312)
T ss_dssp EEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTC-------------------
T ss_pred EEECCCCEEEEEEC-CCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCC-------------------
Confidence 99999999999998 5578888999999999999999 78999999999999999999863
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec-c
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR-G 257 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-~ 257 (764)
.....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .
T Consensus 140 -----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 140 -----------------------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp -----------------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred -----------------------------EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 2223466788999999999999999999999999999999998887764 4
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEE---EEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWA---LASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 258 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~---l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
+...+..++|+|++++|++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|++|+.||.|++||+.+++
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 5678999999999999999999999999999999999999988765432 3335788999999999999999999999
Q ss_pred EEEEee-cCCCeEEEEeeCCc--eEEEe--CCCcEEEeeCC
Q 046871 335 SLLLCT-GEHPILQLALHDDN--IWVAT--TDSSVHRWPAE 370 (764)
Q Consensus 335 ~~~~~~-~~~~V~~l~~spd~--l~~~s--~dg~I~iwd~~ 370 (764)
.+..+. |...|.+++|+|++ +++++ .|+.|++|+.+
T Consensus 271 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 887776 67889999999998 66666 59999999864
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=336.74 Aligned_cols=286 Identities=21% Similarity=0.230 Sum_probs=233.7
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceee-cc-cccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-ES-HVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~-h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
||.+.|.+++| +++ +|++|+.||+|++||+..+.......+ .+ |...|.+++|+|++ +|++++.|++|++
T Consensus 12 ~h~~~v~~~~~-----s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 12 LYKEKIWSFDF-----SQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp CCSSCEEEEEE-----ETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCCceeeecc-----CCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 89999999999 565 999999999999999987544555556 44 99999999999997 8999999999999
Q ss_pred ecCCC------CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 110 WNCSS------DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 110 Wd~~~------~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
|++.. ...++..+.+|.+.|.+++|+ +++++|++|+.|+.|++||++....
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~---------------------- 141 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGE---------------------- 141 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCC----------------------
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCC----------------------
Confidence 99732 235667888999999999999 7899999999999999999953210
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeccCCcC
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG--SKTIKLRGHTDN 261 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~~ 261 (764)
.......+.+|...|.+++|+|++.+|++|+.|+.|++||..++ +++..+.+|.+.
T Consensus 142 ----------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 142 ----------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199 (330)
T ss_dssp ----------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred ----------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence 01223446789999999999999999999999999999998876 678889999999
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--------eeeEEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 262 IRSLLLDST--GRYCLSGSSDSMIRLWDLGQQ--------RCIHSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 262 V~~l~~spd--g~~l~sgs~Dg~I~iwdl~~~--------~~~~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
|.+++|+|+ +.+|++|+.|++|++||+..+ .+...+.. |...|++++|++++ +|++++.||.|++||.
T Consensus 200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence 999999998 778999999999999998654 45555654 89999999999765 8999999999999999
Q ss_pred CCCe--EEEEe--ecCC-CeEEEEeeC--Cc--eEEEeCCCcEEEeeCCC
Q 046871 331 ATRE--SLLLC--TGEH-PILQLALHD--DN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 331 ~~~~--~~~~~--~~~~-~V~~l~~sp--d~--l~~~s~dg~I~iwd~~~ 371 (764)
.+++ ..... .|.. .|.+++|+| ++ |++++.|+.|++|+++.
T Consensus 279 ~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 279 VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 8774 22222 2444 899999999 45 89999999999999864
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-38 Score=335.96 Aligned_cols=322 Identities=16% Similarity=0.240 Sum_probs=275.5
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecC
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNC 112 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~ 112 (764)
|.++|.+++| ||||++++++..++.+.+|+... ........+|...|.+++|+|++ ++++++ |+.|++|++
T Consensus 8 ~~~~v~~~~~-----s~dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~ 79 (337)
T 1gxr_A 8 GSKPAYSFHV-----TADGQMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79 (337)
T ss_dssp EEEECCEEEE-----CSSSCEEECCCCTTSSSSTTCCS--EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEET
T ss_pred cCCceeEEEE-----CCCCCEEEeecCCCcEeccccCC--ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEEC
Confidence 5678999999 89999999998888877776654 33344445899999999999998 667776 999999998
Q ss_pred CCCCe--eeeecc--ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 113 SSDGT--CIRTLR--QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 113 ~~~~~--~~~~l~--~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
..... ....+. .|...|.+++|+ +++++|++++.|+.|++||+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~---------------------------- 130 (337)
T 1gxr_A 80 SHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPT---------------------------- 130 (337)
T ss_dssp TSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC-----------------------------
T ss_pred CCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCC----------------------------
Confidence 54321 222222 789999999999 789999999999999999998631
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
......+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+
T Consensus 131 ------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 131 ------------------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp -------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ------------------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence 11223456788899999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEE
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQL 348 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l 348 (764)
|++++|++++.|+.|++||+++++.+..+. |...+.+++|+|++++|++++.|+.|++||+.+++......+..+|.++
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~ 271 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEE
Confidence 999999999999999999999999888875 7889999999999999999999999999999999888777788999999
Q ss_pred EeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEE
Q 046871 349 ALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEI 426 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~ 426 (764)
+|+|++ +++++.|+.|++|++.+++..... .+...+..++|
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-------------------------------------~~~~~v~~~~~ 314 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------------------------------------KESSSVLSCDI 314 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------------------------------------ECSSCEEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEEe-------------------------------------cCCCcEEEEEE
Confidence 999998 889999999999999887654221 12345778899
Q ss_pred ecCCcEEEEeeCCCcEEEEEcc
Q 046871 427 LNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 427 s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
++|+++|++++.||.|++||+.
T Consensus 315 s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 315 SVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CTTSCEEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999999999974
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-38 Score=336.51 Aligned_cols=289 Identities=21% Similarity=0.327 Sum_probs=240.7
Q ss_pred CCCCCeeEEEeecccccC-CCcEEEEEeCCCcEEEEeCCCCC-----CccceeecccccceeEEEEeCCC-eEEEEeCCC
Q 046871 33 KHCAGINCLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLADDV-----GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT 105 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~~~-----~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg 105 (764)
||.+.|++++|.....++ ++++|+||+.|++|++||+.... +.....+.+|...|.+++|+|++ ++++++.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 999999999984322234 89999999999999999997532 23467789999999999999997 899999999
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+|++||+ ..++++..+.+|...|.+++|+ +++.+|++++.|+.|++||+......
T Consensus 99 ~v~lwd~-~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~~----------------------- 153 (343)
T 2xzm_R 99 TLRLWDL-RTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKF----------------------- 153 (343)
T ss_dssp EEEEEET-TSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEEE-----------------------
T ss_pred cEEEEEC-CCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCcee-----------------------
Confidence 9999998 5578888999999999999999 78999999999999999998632100
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG----------NLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g----------~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
.......|...|.+++|+|++ .+|++++.|+.|++|| ...+....+
T Consensus 154 -----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~ 209 (343)
T 2xzm_R 154 -----------------------SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTF 209 (343)
T ss_dssp -----------------------ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEE
T ss_pred -----------------------eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEE
Confidence 001124678889999999986 7999999999999999 456777888
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 256 RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
.+|...|.+++|+|+|++|++|+.|++|++||+.. ......+ .+...|.+++|+|++.+++++ .|+.|++||+.+++
T Consensus 210 ~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 99999999999999999999999999999999954 4444444 356679999999999877654 58889999998766
Q ss_pred EEE--Ee------------ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 335 SLL--LC------------TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 335 ~~~--~~------------~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
... .+ .+...|.+++|+|++ |++|+.||.|++|+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 433 22 245679999999998 999999999999998653
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.6e-38 Score=329.84 Aligned_cols=289 Identities=13% Similarity=0.203 Sum_probs=249.2
Q ss_pred CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
....++|.+|.+.|.+++|+|++ +|++++.||+|++||+ ..+..+..+..|...|.+++|+ +++++|++|+.|+.|+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFI-ARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEE-GGGTEEEEEETTSEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEe-CCCCEEEEECCCCEEE
Confidence 34577899999999999999997 8999999999999997 5678888999999999999999 7899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||+.++ .....+.+|...|.+++|+|++++|
T Consensus 81 vwd~~~~------------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l 112 (304)
T 2ynn_A 81 VFNYNTG------------------------------------------------EKVVDFEAHPDYIRSIAVHPTKPYV 112 (304)
T ss_dssp EEETTTC------------------------------------------------CEEEEEECCSSCEEEEEECSSSSEE
T ss_pred EEECCCC------------------------------------------------cEEEEEeCCCCcEEEEEEcCCCCEE
Confidence 9999863 2334577899999999999999999
Q ss_pred EEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEe-eecCceEEEEE
Q 046871 233 VSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYA-VHTDSVWALAS 309 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-~h~~~V~~l~~ 309 (764)
++|+.|+.|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++|++||++++.+...+. .|...+..+.|
T Consensus 113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (304)
T ss_dssp EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE
T ss_pred EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEE
Confidence 99999999999999887 45567889999999999999 67899999999999999998887766665 45678999999
Q ss_pred cC--CCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcc
Q 046871 310 TP--TFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 310 sp--d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
+| ++.+|++|+.|+.|++||+++++++..+. |...|.+++|+|++ |++++.|+.|++||+.+++..+.+..+.
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-- 270 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-- 270 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--
Confidence 76 77899999999999999999999888776 67899999999998 9999999999999999888766654322
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc--EEEEeeCCCcEEEEEccc
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR--HVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~--~l~t~s~dG~V~lWdi~t 449 (764)
..+..++++|+++ ++++++.|| +.+|++.+
T Consensus 271 ----------------------------------~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 271 ----------------------------------ERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp ----------------------------------SSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred ----------------------------------ccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 2355677777765 577777554 77888764
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=336.04 Aligned_cols=300 Identities=16% Similarity=0.239 Sum_probs=235.6
Q ss_pred CccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCC-Ceeeeec-cc-cCCceEEEEEecCCCcEEEEEeCCCe
Q 046871 74 GSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSD-GTCIRTL-RQ-HSDYVTCLAAAEKNSNIVASGGLGAE 150 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~-~~~~~~l-~~-h~~~V~~l~~~p~~~~~lasg~~dg~ 150 (764)
.+++.++.+|.+.|.++.|+++ +|++++.|++|++||+... ......+ .. |...|.+++|+ +++.+|++|+.|+.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCCCc
Confidence 4567889999999999999998 9999999999999998442 2445555 34 99999999999 78999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|++||+....... ........+.+|...|++++|+|+++
T Consensus 82 v~iw~~~~~~~~~-----------------------------------------~~~~~~~~~~~h~~~V~~v~~sp~g~ 120 (330)
T 2hes_X 82 VSIWAKEESADRT-----------------------------------------FEMDLLAIIEGHENEVKGVAWSNDGY 120 (330)
T ss_dssp EEEEEC------------------------------------------------CCCEEEEEEC----CEEEEEECTTSC
T ss_pred EEEEEcccCcCcc-----------------------------------------ccceeEEEEcCCCCcEEEEEECCCCC
Confidence 9999986421000 00122345678999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCC----ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeeEEEeeecCce
Q 046871 231 LLVSGGTEKVVRVWDPRTG----SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ--RCIHSYAVHTDSV 304 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~--~~~~~l~~h~~~V 304 (764)
+|++|+.|+.|++||++.. +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ +++.++.+|.+.|
T Consensus 121 ~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v 200 (330)
T 2hes_X 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200 (330)
T ss_dssp EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE
Confidence 9999999999999999532 456788999999999999999999999999999999998766 6889999999999
Q ss_pred EEEEEcCC--CCEEEEecCCCcEEEEeCCCC--------eEEEEee--cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCC
Q 046871 305 WALASTPT--FSHVYSGGRDLSLYLTDLATR--------ESLLLCT--GEHPILQLALHDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 305 ~~l~~spd--~~~l~sgs~Dg~I~iwd~~~~--------~~~~~~~--~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~ 371 (764)
++++|+|+ +.+|++|+.|++|++||+..+ .....+. |...|.+++|++++ +++++.|+.|++|+..+
T Consensus 201 ~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 201 WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 99999998 678999999999999998754 2333332 67789999999888 99999999999999865
Q ss_pred CCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCC-C-CceEeEEec--CCcEEEEeeCCCcEEEEEc
Q 046871 372 RNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGI-P-GIVQHEILN--NRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~-~-~i~~~~~s~--dg~~l~t~s~dG~V~lWdi 447 (764)
++...... ...++ . .|..++|+| |+++|+|++.||+|++||+
T Consensus 281 ~~~~~~~~----------------------------------~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 281 GEWKVFAK----------------------------------RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TEEEEEEE----------------------------------ESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred CceEEEec----------------------------------cccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 42110000 00111 2 577889998 7899999999999999998
Q ss_pred ccc
Q 046871 448 TRG 450 (764)
Q Consensus 448 ~tg 450 (764)
.+.
T Consensus 327 ~~~ 329 (330)
T 2hes_X 327 EKA 329 (330)
T ss_dssp ---
T ss_pred ccC
Confidence 753
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-38 Score=347.76 Aligned_cols=332 Identities=15% Similarity=0.191 Sum_probs=269.7
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
.....+++++| +|++++|++|+.||.|++||+.+ ......+..| ..+....|++++ +|++++.|+.|++||
T Consensus 54 ~~~~~~~~~~~-----s~~g~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 54 RGVDAGKGNTF-----EKVGSHLYKARLDGHDFLFNTII--RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp TCCBCCTTCEE-----EEEETTEEEEEETTEEEEEECCS--EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred cccccccceee-----eecCCeEEEEEcCCcEEEEEecc--cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 34445667888 79999999999999999999987 4555556666 445555678886 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ ..+.....+..|.+.|.+++|+ +++++|++++.|+.|++||+.++.
T Consensus 126 ~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~------------------------------- 172 (420)
T 3vl1_A 126 S-NFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGS------------------------------- 172 (420)
T ss_dssp T-TSCEEEEETTSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCC-------------------------------
T ss_pred C-CCcceeeecccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCc-------------------------------
Confidence 7 4677888888999999999999 688999999999999999998631
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc---CCcCeEEE---
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG---HTDNIRSL--- 265 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l--- 265 (764)
....+.+|...|++++|+|++++|++++.|+.|++||+++++.+..+.. |...|.++
T Consensus 173 -----------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 173 -----------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp -----------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred -----------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence 2234678999999999999999999999999999999999999888875 33444444
Q ss_pred ------------------EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-eecCceEEEEEcCCCC-EEEEecCCCcE
Q 046871 266 ------------------LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA-VHTDSVWALASTPTFS-HVYSGGRDLSL 325 (764)
Q Consensus 266 ------------------~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-~h~~~V~~l~~spd~~-~l~sgs~Dg~I 325 (764)
+|+|++++|++|+.||.|++||+++++.+..+. .|...|++++|+|++. +|++|+.||.|
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 457899999999999999999999998877775 4788999999999999 99999999999
Q ss_pred EEEeCCCCeE-EEEee--cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCC
Q 046871 326 YLTDLATRES-LLLCT--GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGS 401 (764)
Q Consensus 326 ~iwd~~~~~~-~~~~~--~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 401 (764)
++||+++++. +..+. +..+|.++.+.+.. +++++.|+.|++|++........+..
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--------------------- 374 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE--------------------- 374 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC---------------------
T ss_pred EEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee---------------------
Confidence 9999998753 44443 56788899777655 88999999999999987433222210
Q ss_pred CCcccCCCCCCccccCCCCceEeEEecCCc---EEEEeeCCCcEEEEEccc
Q 046871 402 TPVSSRFKEPNFTIPGIPGIVQHEILNNRR---HVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 402 ~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~---~l~t~s~dG~V~lWdi~t 449 (764)
...+.........+..++|+||++ .|++.+.+|.+.+|+++.
T Consensus 375 ------~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 ------FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ------TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ------ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 111112233455688999999999 888888899999999864
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=338.78 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=245.2
Q ss_pred Cccceeeccccc-ceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCee--e-eeccccCCceEEEEEecCCCcEEEEEeCC
Q 046871 74 GSCSATFESHVD-WVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTC--I-RTLRQHSDYVTCLAAAEKNSNIVASGGLG 148 (764)
Q Consensus 74 ~~~~~~l~~h~~-~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~--~-~~l~~h~~~V~~l~~~p~~~~~lasg~~d 148 (764)
..++.++.+|.. .|.+++|+|++ +|++|+.|++|+|||+.. +.. . ....+|...|.+++|+ +++++|++|+.|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEEC-CCCCEEEEEECC
Confidence 456788899988 99999999997 899999999999999743 332 2 2346899999999999 789999999999
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC
Q 046871 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228 (764)
Q Consensus 149 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 228 (764)
+.|++||+.... ......+.+|...|.+++|+|+
T Consensus 83 ~~v~iw~~~~~~----------------------------------------------~~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 83 ATTCIWKKNQDD----------------------------------------------FECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp SCEEEEEECCC-----------------------------------------------EEEEEEECCCSSCEEEEEECTT
T ss_pred CcEEEEEccCCC----------------------------------------------eEEEEEccCCCCCceEEEEeCC
Confidence 999999987521 1123457789999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc---eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eeEEEeeecCc
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGS---KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR--CIHSYAVHTDS 303 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~--~~~~l~~h~~~ 303 (764)
+++|++|+.|+.|++||++++. .+..+.+|...|.+++|+|++++|++|+.|++|++||++.++ +..++.+|...
T Consensus 117 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~ 196 (345)
T 3fm0_A 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST 196 (345)
T ss_dssp SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCc
Confidence 9999999999999999998764 456788999999999999999999999999999999998775 56788999999
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCC---------------eEEEEee--cCCCeEEEEeeCCc--eEEEeCCCcE
Q 046871 304 VWALASTPTFSHVYSGGRDLSLYLTDLATR---------------ESLLLCT--GEHPILQLALHDDN--IWVATTDSSV 364 (764)
Q Consensus 304 V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~---------------~~~~~~~--~~~~V~~l~~spd~--l~~~s~dg~I 364 (764)
|++++|+|++++|++++.|++|++||.... .++..+. +...|.+++|++++ +++++.|+.|
T Consensus 197 v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 197 VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 999999999999999999999999996321 1222222 56789999999998 9999999999
Q ss_pred EEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccc-cCCCCceEeEEecCC-cEEEEeeCCCcE
Q 046871 365 HRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTI-PGIPGIVQHEILNNR-RHVLTKDAAGSV 442 (764)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-~g~~~i~~~~~s~dg-~~l~t~s~dG~V 442 (764)
++|+........... +. ...... .+...|.+++|+|++ .+|++++.||+|
T Consensus 277 ~vw~~~~~~~~~~~~-----------~~-----------------~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 277 RVFQEDPNSDPQQPT-----------FS-----------------LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp EEEEECTTSCTTSCC-----------EE-----------------EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEeCCCCCcceee-----------EE-----------------EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence 999987543211000 00 000001 123468999999998 599999999999
Q ss_pred EEEEccccEEeeec
Q 046871 443 KLWEITRGVVVEDY 456 (764)
Q Consensus 443 ~lWdi~tg~~i~~~ 456 (764)
++|++.+++....+
T Consensus 329 ~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 329 AFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEECC-------
T ss_pred EEEEecCCCCcccc
Confidence 99999998876655
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5e-37 Score=341.26 Aligned_cols=318 Identities=27% Similarity=0.428 Sum_probs=279.6
Q ss_pred CCCCCe-eEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEec
Q 046871 33 KHCAGI-NCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V-~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd 111 (764)
||.+.| +|+++ ++++|++|+.||.|++||+.+ ++.+..+.+|...|.++.|+ ++.+++++.|++|++||
T Consensus 116 ~h~~~v~~~~~~-------~g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 116 GHDDHVITCLQF-------CGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CSTTSCEEEEEE-------ETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred ccCCCcEEEEEE-------cCCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEE
Confidence 899875 66655 589999999999999999998 67889999999999999998 45899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ ..++++..+.+|...|.+++|+ ++.+++|+.|+.|++||+.++
T Consensus 186 ~-~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~-------------------------------- 229 (445)
T 2ovr_B 186 A-ETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETG-------------------------------- 229 (445)
T ss_dssp T-TTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSC--------------------------------
T ss_pred C-CcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCC--------------------------------
Confidence 7 5678889999999999999997 578999999999999999863
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
.....+.+|...|.++++ +++++++|+.||.|++||+++++.+..+.+|...|.++.| ++
T Consensus 230 ----------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~ 289 (445)
T 2ovr_B 230 ----------------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG 289 (445)
T ss_dssp ----------------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS
T ss_pred ----------------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC
Confidence 223446678999999999 6889999999999999999999999999999999999999 78
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee----cCCCeEE
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT----GEHPILQ 347 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~~~~V~~ 347 (764)
.++++++.|+.|++||+++++++.++..|...+.++.++ ++++++|+.||.|++||+.+++.+..+. +..+|.+
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEE
Confidence 999999999999999999999999999999999998885 5699999999999999999999888776 5678999
Q ss_pred EEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEe
Q 046871 348 LALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEIL 427 (764)
Q Consensus 348 l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s 427 (764)
++|+++.+++++.||.|++||+.+++....+..... -.....|..++|+
T Consensus 368 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------------------------------~~~~~~v~~~~~s 416 (445)
T 2ovr_B 368 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES-------------------------------GGSGGVVWRIRAS 416 (445)
T ss_dssp EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT-------------------------------GGGTCEEEEEEEC
T ss_pred EEECCCEEEEEeCCCeEEEEECCCCceeeeeecccc-------------------------------CCCCceEEEEEec
Confidence 999877799999999999999999887666531100 0113447889999
Q ss_pred cCCcEEEEeeCCCc----EEEEEccc
Q 046871 428 NNRRHVLTKDAAGS----VKLWEITR 449 (764)
Q Consensus 428 ~dg~~l~t~s~dG~----V~lWdi~t 449 (764)
|++.+|++++.||+ |.+||+..
T Consensus 417 ~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 417 NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999998 99999874
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-37 Score=339.65 Aligned_cols=281 Identities=23% Similarity=0.450 Sum_probs=243.6
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccc------------------cceeEEEEeC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHV------------------DWVNDAVLVG 94 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~------------------~~V~~v~~s~ 94 (764)
+|.+.|+|++| ||||++||+|+ ++.+++|++.+ +..+..+..|. ..|.+++|+|
T Consensus 62 ~h~~~V~~v~f-----spdg~~la~g~-~~~v~i~~~~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKF-----SNDGEYLATGC-NKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCEEEE-----CTTSSEEEEEC-BSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEEEEE-----CCCCCEEEEEc-CCcEEEEEecC--CCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 59999999999 89999999987 68999999988 55566665543 2499999999
Q ss_pred CC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 95 DN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 95 d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
++ +|++++.|++|++||+ ..++.+..+.+|...|.+++|+ +++.+|++++.|+.|++||++++..
T Consensus 134 dg~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~------------ 199 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQC------------ 199 (393)
T ss_dssp TSSEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE------------
T ss_pred CCCEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCee------------
Confidence 97 8999999999999997 5578888999999999999999 7889999999999999999986411
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKT 252 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~ 252 (764)
.. ...+...+.+++|+| ++++|++|+.|+.|++||+++++.+
T Consensus 200 ------------------------------------~~-~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 200 ------------------------------------SL-TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242 (393)
T ss_dssp ------------------------------------EE-EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred ------------------------------------EE-EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 11 112456799999999 8999999999999999999999887
Q ss_pred EEe-------ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------CeeeEEEeeecCceEEEEEcCCC
Q 046871 253 IKL-------RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ------------QRCIHSYAVHTDSVWALASTPTF 313 (764)
Q Consensus 253 ~~l-------~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~------------~~~~~~l~~h~~~V~~l~~spd~ 313 (764)
..+ .+|...|.+++|+|++++|++|+.|++|++||+++ +.+..++.+|...|.+++|+|++
T Consensus 243 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 322 (393)
T 1erj_A 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 322 (393)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred EeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC
Confidence 776 57999999999999999999999999999999975 34667888999999999999999
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeC------Cc--eEEEeCCCcEEEeeCCCC
Q 046871 314 SHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHD------DN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 314 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~sp------d~--l~~~s~dg~I~iwd~~~~ 372 (764)
.+|++|+.|+.|++||+.+++.+..+. |...|.+++|++ ++ +++|+.|+.|++|++...
T Consensus 323 ~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 323 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999999999887766 678899999986 44 899999999999998643
No 36
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-37 Score=360.60 Aligned_cols=400 Identities=15% Similarity=0.164 Sum_probs=307.5
Q ss_pred CCCCCC-eeEEEeecccccC--CCcEEEEEeCCCcEEEEeCCCC------CCccceeecccccceeEEEEeCCC-eEEEE
Q 046871 32 TKHCAG-INCLAVLKSSVSN--GVDYLFTGSRDGTLKRWSLADD------VGSCSATFESHVDWVNDAVLVGDN-TLVSC 101 (764)
Q Consensus 32 ~gH~~~-V~~l~~~~~~~S~--d~~~L~sgs~Dg~I~iWd~~~~------~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~ 101 (764)
.+|... |++++| +| ++++|++|+.||.|++||+.++ .......+..|...|.+++|+|++ +|+++
T Consensus 60 ~~h~~~~v~~~~~-----sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 134 (615)
T 1pgu_A 60 TGHGSSVVTTVKF-----SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134 (615)
T ss_dssp CTTTTSCEEEEEE-----CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ecCCCceEEEEEE-----CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence 489999 999999 79 9999999999999999999754 356778888999999999999997 88888
Q ss_pred eCC----CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCc---CCcC
Q 046871 102 SSD----TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME---DDCS 174 (764)
Q Consensus 102 s~D----g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~---~~~~ 174 (764)
+.+ +.|++||. +..+..+.+|...|.+++|+|.+..++++++.|+.|++||+.+............ ....
T Consensus 135 ~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 211 (615)
T 1pgu_A 135 GEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211 (615)
T ss_dssp ECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred ccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence 887 78999993 5678889999999999999944334899999999999999887654332221111 1111
Q ss_pred ccccCCCCCCc-ccceeecCCCCcccccccCCCCccceec-c---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 046871 175 TGINGSGNSLP-VTSLRTIGSSNSISAHTSQSQGYVPIAA-K---GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 175 ~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~ 249 (764)
..+ ... ...+...+.++.+.+|+..... ....+ . .|...|.+++|+ ++++|++++.|+.|++||++++
T Consensus 212 ~~~-----~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 212 VEF-----SPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp EEE-----CSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EEE-----CCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 111 112 2345556667888888865433 33444 5 899999999999 9999999999999999999999
Q ss_pred ceeEEeccC----CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC-------------
Q 046871 250 SKTIKLRGH----TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT------------- 312 (764)
Q Consensus 250 ~~~~~l~~h----~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd------------- 312 (764)
+.+..+..+ ...+.++.|+ +++++++++.|+.|++||+.+++++..+..|...|.+++| |+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w 362 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEW 362 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEET
T ss_pred cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEE
Confidence 999888876 4678888886 8999999999999999999988888888777666666655 33
Q ss_pred --------------------CCE---------------------------------------------------------
Q 046871 313 --------------------FSH--------------------------------------------------------- 315 (764)
Q Consensus 313 --------------------~~~--------------------------------------------------------- 315 (764)
+..
T Consensus 363 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (615)
T 1pgu_A 363 SSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 442 (615)
T ss_dssp TTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeee
Confidence 333
Q ss_pred ----------------EEEecC-CCcEEEEeCCCCeEE--EEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCC
Q 046871 316 ----------------VYSGGR-DLSLYLTDLATRESL--LLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 316 ----------------l~sgs~-Dg~I~iwd~~~~~~~--~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~ 374 (764)
|++++. |+.|++||+.+++.. ....+...|.+++|+|++ |++++.|+.|++|++.+++.
T Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 443 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp EECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred cccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc
Confidence 444444 555555555544432 122356789999999998 88999999999999999988
Q ss_pred ceeeecCCcceeccccccc----------ccc-----ccCCCCCcccCCCC--CCccccCC-CCceEeEEecCCcEEEEe
Q 046871 375 QKVFQRGGSFIAGNLSFSR----------ARV-----SLEGSTPVSSRFKE--PNFTIPGI-PGIVQHEILNNRRHVLTK 436 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~s~----------~~~-----~~~~~~~~~~~~~~--~~~~i~g~-~~i~~~~~s~dg~~l~t~ 436 (764)
...+...+...+.+++|+| +.. ..++.+.+|++... ....+.++ ..|..++|++|++ |+++
T Consensus 523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~ 601 (615)
T 1pgu_A 523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 601 (615)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence 8887763455566889988 443 24667777765542 33345544 5699999999999 9999
Q ss_pred eCCCcEEEEEccc
Q 046871 437 DAAGSVKLWEITR 449 (764)
Q Consensus 437 s~dG~V~lWdi~t 449 (764)
+.||.|++||+.+
T Consensus 602 ~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 602 GADACIKRWNVVL 614 (615)
T ss_dssp ETTSCEEEEEEC-
T ss_pred cCCceEEEEeeec
Confidence 9999999999875
No 37
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-38 Score=377.48 Aligned_cols=372 Identities=11% Similarity=0.068 Sum_probs=275.2
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNC 112 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~ 112 (764)
||...|+|++| +|++++||+|+.||+|+||+..+ .+....+ .|...|.+++|+|+.+|++++.|++|++||+
T Consensus 15 gh~~~V~~laf-----spdg~~lAsgs~Dg~I~lw~~~~--~~~~~~~-~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 15 GMSSKPIAAAF-----DFTQNLLAIATVTGEVHIYGQQQ--VEVVIKL-EDRSAIKEMRFVKGIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp ECSSCEEEEEE-----ETTTTEEEEEETTSEEEEECSTT--CEEEEEC-SSCCCEEEEEEETTTEEEEEETTCEEEEEET
T ss_pred CCCCCcEEEEE-----CCCCCEEEEEeCCCEEEEEeCCC--cEEEEEc-CCCCCEEEEEEcCCCEEEEEECcCeEEEEEC
Confidence 89999999999 79999999999999999999876 4444443 4788999999999447999999999999998
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
..++++..+. |.+.|.+++|+ ++++++++|+.||.|++||+.+...... . +
T Consensus 87 -~~~~~~~~~~-~~~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~-------------------------~-i 137 (902)
T 2oaj_A 87 -YSQKVLTTVF-VPGKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSF-------------------------K-L 137 (902)
T ss_dssp -TTCSEEEEEE-CSSCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEE-------------------------E-E
T ss_pred -CCCcEEEEEc-CCCCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccc-------------------------e-e
Confidence 4567777775 77899999999 7899999999999999999986421000 0 0
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeccC-------------
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKLRGH------------- 258 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h------------- 258 (764)
. ..+. ......+|.+.|++++|+|+ +..|++|+.||.| +||+++++.+..+..|
T Consensus 138 ---~--~~~~------~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 138 ---D--NLQK------SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp ---C--CHHH------HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCC
T ss_pred ---c--cccc------cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccc
Confidence 0 0000 00124678899999999995 5789999999999 9999999988888765
Q ss_pred -----CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE--Ee---e-------------ecCceEEEEEc----C
Q 046871 259 -----TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS--YA---V-------------HTDSVWALAST----P 311 (764)
Q Consensus 259 -----~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~--l~---~-------------h~~~V~~l~~s----p 311 (764)
...|.+++|+|+|++|++|+.||+|++||+++++++.. +. . |...|++++|+ |
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~p 285 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNP 285 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSST
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCC
Confidence 57799999999999999999999999999999888764 21 1 34578999994 4
Q ss_pred CC-CEEEEecCC-----CcEEEE---------------------------------------------------------
Q 046871 312 TF-SHVYSGGRD-----LSLYLT--------------------------------------------------------- 328 (764)
Q Consensus 312 d~-~~l~sgs~D-----g~I~iw--------------------------------------------------------- 328 (764)
++ .+|++|+.| ..+.+|
T Consensus 286 d~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~ 365 (902)
T 2oaj_A 286 EYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPG 365 (902)
T ss_dssp TEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCS
T ss_pred CCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCce
Confidence 43 345555443 144444
Q ss_pred --------------eCCCCeEEEE--------eecCCCeEE----------------------------------EEeeC
Q 046871 329 --------------DLATRESLLL--------CTGEHPILQ----------------------------------LALHD 352 (764)
Q Consensus 329 --------------d~~~~~~~~~--------~~~~~~V~~----------------------------------l~~sp 352 (764)
|+.++..... ..+...|++ ++|+|
T Consensus 366 ~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp 445 (902)
T 2oaj_A 366 LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE 445 (902)
T ss_dssp EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS
T ss_pred eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc
Confidence 4433321110 001123443 34567
Q ss_pred Cc--eEEEeCCCcEEEeeCCCCCCc--eeee--------cCCcceecccccccccc-----ccCCCCCcccCCCC-----
Q 046871 353 DN--IWVATTDSSVHRWPAEGRNPQ--KVFQ--------RGGSFIAGNLSFSRARV-----SLEGSTPVSSRFKE----- 410 (764)
Q Consensus 353 d~--l~~~s~dg~I~iwd~~~~~~~--~~~~--------~~~~~~~~~~~~s~~~~-----~~~~~~~~~~~~~~----- 410 (764)
++ +++|+.|++|++||+.++... ..+. ..+...+.+++|+|+.. ..++.+.+|++...
T Consensus 446 dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 446 YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 77 999999999999999987543 1121 13444567899998654 34666666644322
Q ss_pred -----------------------------------------CCcccc-CCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 411 -----------------------------------------PNFTIP-GIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 411 -----------------------------------------~~~~i~-g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
+..++. +...|.+++|+||| +||+|+.||+|+|||+.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 122344 34569999999999 99999999999999999
Q ss_pred ccEEee
Q 046871 449 RGVVVE 454 (764)
Q Consensus 449 tg~~i~ 454 (764)
++.++.
T Consensus 605 ~~~~~~ 610 (902)
T 2oaj_A 605 GPAIIY 610 (902)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 888764
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.2e-37 Score=341.72 Aligned_cols=339 Identities=22% Similarity=0.321 Sum_probs=276.8
Q ss_pred CCCCCe-eEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEec
Q 046871 33 KHCAGI-NCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V-~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd 111 (764)
||...| +|+++ ++++|++|+.||+|++||+.+ ++.+..+.+|.+.|.+++|++++.+++++.||+|++||
T Consensus 119 ~h~~~v~~~~~~-------~~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 119 GHMTSVITCLQF-------EDNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189 (464)
T ss_dssp CCSSSCEEEEEE-------ETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEE
T ss_pred CCCCCcEEEEEE-------CCCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEE
Confidence 898885 67766 467999999999999999988 67889999999999999999999999999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEec-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAE-KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p-~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
+ ..++++..+.+|...|.+++|++ +++.++++|+.|+.|++||+.+............
T Consensus 190 ~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-------------------- 248 (464)
T 3v7d_B 190 I-KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-------------------- 248 (464)
T ss_dssp T-TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC--------------------
T ss_pred C-CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC--------------------
Confidence 8 56888999999999999999985 4678999999999999999987543321111000
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST 270 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 270 (764)
...................+|...|.++. ++++++++|+.|+.|++||+++++.+..+.+|...|.+++|+|+
T Consensus 249 -----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 249 -----YPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -----SSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred -----cceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 00001111111223445778889998874 56899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEe
Q 046871 271 GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLAL 350 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~ 350 (764)
+++|++|+.||+|++||+++++++.++.+|...|.+++|+ +.+|++++.||.|++||+.++.......+...+..++|
T Consensus 322 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 399 (464)
T 3v7d_B 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 399 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEE
Confidence 9999999999999999999999999999999999999997 57999999999999999999988888888888999999
Q ss_pred eCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecC
Q 046871 351 HDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNN 429 (764)
Q Consensus 351 spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~d 429 (764)
++++ +++++.|+.|++||+.+++.+..+.. .+...|..++|+ +
T Consensus 400 ~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~-----------------------------------~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 400 YVSDNILVSGSENQFNIYNLRSGKLVHANIL-----------------------------------KDADQIWSVNFK-G 443 (464)
T ss_dssp EECSSEEEEEETTEEEEEETTTCCEEESCTT-----------------------------------TTCSEEEEEEEE-T
T ss_pred EeCCCEEEEecCCeEEEEECCCCcEEehhhc-----------------------------------cCCCcEEEEEec-C
Confidence 9998 44444499999999998876543211 123446777886 4
Q ss_pred CcEEEEeeCCCcEEEEE
Q 046871 430 RRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 430 g~~l~t~s~dG~V~lWd 446 (764)
+..+++++.||.+.+|-
T Consensus 444 ~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 444 KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEeCCeEEEEE
Confidence 55666677777666554
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-37 Score=389.87 Aligned_cols=367 Identities=17% Similarity=0.262 Sum_probs=300.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.+|.+.|+|++| ||++++|++|+.||+|++||+.+ ++.+.++.+|...|.+++|+|++ +|++++.|++|++|
T Consensus 612 ~~h~~~v~~~~~-----s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 612 RPHTDAVYHACF-----SQDGQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CCCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ecccccEEEEEE-----CCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 389999999999 89999999999999999999998 67788999999999999999997 89999999999999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
|+ .+++++..+.+|...|.+++|+|. +..++++|+.|+.|++||+.++.
T Consensus 685 d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~----------------------------- 734 (1249)
T 3sfz_A 685 DS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE----------------------------- 734 (1249)
T ss_dssp ET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----------------------------
T ss_pred EC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----------------------------
Confidence 98 568889999999999999999953 56789999999999999998642
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--------------
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-------------- 255 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l-------------- 255 (764)
....+.+|...|.+++|+|++++|++|+.||.|++||+++++....+
T Consensus 735 -------------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1249)
T 3sfz_A 735 -------------------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795 (1249)
T ss_dssp -------------------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------
T ss_pred -------------------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccc
Confidence 22345678888888888888888888888888888887665433222
Q ss_pred -----------------------------------------ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeee
Q 046871 256 -----------------------------------------RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI 294 (764)
Q Consensus 256 -----------------------------------------~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~ 294 (764)
.+|...|.+++|+|+++++++++.||.|++||+.++.++
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE
T ss_pred cccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 267889999999999999999999999999999999999
Q ss_pred EEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE-----------------------------E---------
Q 046871 295 HSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES-----------------------------L--------- 336 (764)
Q Consensus 295 ~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~-----------------------------~--------- 336 (764)
..+.+|.+.|++++|+|++++|++++.||.|++|++.+... .
T Consensus 876 ~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 876 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence 99999999999999999999999999999999999653100 0
Q ss_pred EEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccccccc-----ccCCCCCcccCCC
Q 046871 337 LLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARV-----SLEGSTPVSSRFK 409 (764)
Q Consensus 337 ~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~~~~~~ 409 (764)
........+.+++|+|++ +++++.+|.|++|++.+++....+..|... +.+++|+++.. ..++...+|+...
T Consensus 956 ~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA-VRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp EEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC-CCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred EEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc-eEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 011124579999999999 899999999999999999887777655443 45777877543 2345555554433
Q ss_pred CCCcc-ccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 410 EPNFT-IPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 410 ~~~~~-i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
..... ..+...+..+++++++ .+++++.||.|++||+.+++++..+
T Consensus 1035 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A 1035 GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp TEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEE
T ss_pred CceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEE
Confidence 22222 2344568888888865 4677888999999999988877766
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.5e-38 Score=334.19 Aligned_cols=300 Identities=15% Similarity=0.132 Sum_probs=230.3
Q ss_pred EEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCC----------CCeeeeeccccCCceEEEE
Q 046871 64 LKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS----------DGTCIRTLRQHSDYVTCLA 133 (764)
Q Consensus 64 I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~----------~~~~~~~l~~h~~~V~~l~ 133 (764)
.+.|++.... ...|...|.+++|+|||.++.+++|+++++||... ..........|...|.+++
T Consensus 16 ~r~w~~~~~~------~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 89 (344)
T 4gqb_B 16 AREWNLPPNA------PACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLT 89 (344)
T ss_dssp -------CCS------CSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEE
T ss_pred ccccCCCCCC------cccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEE
Confidence 4678876422 23467779999999999554455588889987310 0111112234667899999
Q ss_pred EecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceec
Q 046871 134 AAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA 213 (764)
Q Consensus 134 ~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 213 (764)
|+ ++ ..|++|+.||.|++||+.++.... ......
T Consensus 90 ~s-~d-~~l~~~s~dg~v~lWd~~~~~~~~--------------------------------------------~~~~~~ 123 (344)
T 4gqb_B 90 WV-GE-RGILVASDSGAVELWELDENETLI--------------------------------------------VSKFCK 123 (344)
T ss_dssp EE-TT-TEEEEEETTSEEEEEEECTTSSCE--------------------------------------------EEEEEE
T ss_pred Ee-CC-CeEEEEECCCEEEEEeccCCCcee--------------------------------------------Eeeccc
Confidence 99 44 578899999999999998742210 111235
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe
Q 046871 214 KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQR 292 (764)
Q Consensus 214 ~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~ 292 (764)
.+|.+.|++++|+|+|++|++|+.|+.|++||+++++.+..+.+|.+.|.+++|++++. +|++++.|++|++||+++++
T Consensus 124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999885 78999999999999999999
Q ss_pred eeEEEe--eecCceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc---eEEEeCCCcEE
Q 046871 293 CIHSYA--VHTDSVWALASTPT-FSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN---IWVATTDSSVH 365 (764)
Q Consensus 293 ~~~~l~--~h~~~V~~l~~spd-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~---l~~~s~dg~I~ 365 (764)
+...+. .|...+.+++|+|+ +.+|++|+.||.|++||+++++++..+. |...|++++|+|++ |++++.|++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence 888875 45567999999985 5688999999999999999998887766 67899999999987 78899999999
Q ss_pred EeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc-EEEEeeCCCcEEE
Q 046871 366 RWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR-HVLTKDAAGSVKL 444 (764)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~-~l~t~s~dG~V~l 444 (764)
+||+.+++... +.+ +...|..++|+|+++ +|+|++.||+|++
T Consensus 284 vwd~~~~~~~~-~~~------------------------------------H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 284 VLDSSLSELFR-SQA------------------------------------HRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EECTTCCEEEE-ECC------------------------------------CSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEECCCCcEEE-EcC------------------------------------CCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 99998764321 111 233578899999986 5679999999999
Q ss_pred EEccccEE
Q 046871 445 WEITRGVV 452 (764)
Q Consensus 445 Wdi~tg~~ 452 (764)
|++.+..+
T Consensus 327 w~v~~~~~ 334 (344)
T 4gqb_B 327 HVVPTEPL 334 (344)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99986543
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-37 Score=354.72 Aligned_cols=292 Identities=13% Similarity=0.132 Sum_probs=256.1
Q ss_pred CCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC----ccceeecccccc-eeEEEEeC--CC-eEEEE
Q 046871 30 DDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG----SCSATFESHVDW-VNDAVLVG--DN-TLVSC 101 (764)
Q Consensus 30 ~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~----~~~~~l~~h~~~-V~~v~~s~--d~-~l~s~ 101 (764)
....|.+.|++++| ||++++|++++ ++.|++||+.+ + +....+.+|... |++++|+| ++ +|+++
T Consensus 13 ~~~~~~~~v~~~~~-----spdg~~l~~~~-~~~v~v~~~~~--~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 13 QPSTQRNFTTHLSY-----DPTTNAIAYPC-GKSAFVRCLDD--GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCCCTTCCCCCEE-----ETTTTEEEEEE-TTEEEEEECCS--SCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CCCCccCceeEEEE-----CCCCCEEEEec-CCeEEEEECCC--CCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 34589999999999 79999999998 78999999997 5 678899999999 99999999 87 89999
Q ss_pred eCCCcEEEecCCC-------CCeeeeeccccCCceEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCCCCCCCc
Q 046871 102 SSDTTLKTWNCSS-------DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG----AEVFIWDIEAALAPSKSGDAME 170 (764)
Q Consensus 102 s~Dg~V~vWd~~~-------~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d----g~I~iwdl~~~~~~~~~~~~~~ 170 (764)
+.||+|++||+.. .......+..|...|.+++|+ +++.+|++++.+ +.|++||...
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d~~~------------ 151 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWDSGN------------ 151 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETTTCC------------
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEECCC------------
Confidence 9999999999732 236677888899999999999 789999999987 6888988321
Q ss_pred CCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q 046871 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~ 249 (764)
....+.+|...|.+++|+|+++ ++++++.|+.|++||+.++
T Consensus 152 --------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 152 --------------------------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp --------------------------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred --------------------------------------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence 2234678899999999999998 8999999999999999999
Q ss_pred ceeEEeccCCc---CeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeeEEE-e---eecCceEEEEEcCCCCEEEEecC
Q 046871 250 SKTIKLRGHTD---NIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQRCIHSY-A---VHTDSVWALASTPTFSHVYSGGR 321 (764)
Q Consensus 250 ~~~~~l~~h~~---~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~~~~~l-~---~h~~~V~~l~~spd~~~l~sgs~ 321 (764)
+.+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 272 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA 272 (615)
T ss_dssp EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET
T ss_pred ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC
Confidence 99999999999 9999999999 999999999999999999999999999 6 899999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEEEeecC-----CCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecC
Q 046871 322 DLSLYLTDLATRESLLLCTGE-----HPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 322 Dg~I~iwd~~~~~~~~~~~~~-----~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~ 381 (764)
||.|++||+.+++.+..+... ..+.++.+.... +++++.|+.|++||+.++++...+..+
T Consensus 273 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~ 338 (615)
T 1pgu_A 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH 338 (615)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence 999999999999888777654 567788886433 888888999999998876665555443
No 42
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8e-38 Score=337.04 Aligned_cols=308 Identities=15% Similarity=0.126 Sum_probs=231.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC------CCcEEEecCCCCCee----eeec
Q 046871 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS------DTTLKTWNCSSDGTC----IRTL 122 (764)
Q Consensus 54 ~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~------Dg~V~vWd~~~~~~~----~~~l 122 (764)
+++.++.+.....|++... ....|...|++++|+||| +|++++. |++|++|+... +.. ....
T Consensus 18 ~~~~~~g~~~~~~w~~p~~------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~-~~~~~~~~~~~ 90 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVT------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE-GAPNESLCTAG 90 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEE
T ss_pred eEEecCCCccccccCCCCC------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC-CCcceeEeccc
Confidence 3444555678899998642 235799999999999998 8889987 67899998633 322 2334
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
.+|...|.+++|+ +++. +++++.||.|++||+.++....
T Consensus 91 ~~~~~~V~~~~~s-~d~~-~l~~s~dg~v~lWd~~~~~~~~--------------------------------------- 129 (357)
T 4g56_B 91 VQTEAGVTDVAWV-SEKG-ILVASDSGAVELWEILEKESLL--------------------------------------- 129 (357)
T ss_dssp EECSSCEEEEEEE-TTTE-EEEEETTSCEEEC--------C---------------------------------------
T ss_pred CCCCCCEEEEEEc-CCCC-EEEEECCCEEEEeeccccceeE---------------------------------------
Confidence 5688999999999 5554 5567889999999998742211
Q ss_pred cCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCC
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDS 281 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg 281 (764)
.......+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.+|...|++++|++++. ++++++.|+
T Consensus 130 -----~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 130 -----VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp -----CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred -----EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC
Confidence 01123457899999999999999999999999999999999999999999999999999999875 789999999
Q ss_pred cEEEEeCCCCeeeEEEe--eecCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc---
Q 046871 282 MIRLWDLGQQRCIHSYA--VHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--- 354 (764)
Q Consensus 282 ~I~iwdl~~~~~~~~l~--~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--- 354 (764)
+|++||+++++++..+. .|...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+. +...|++++|+|++
T Consensus 205 ~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 205 RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCC
T ss_pred ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCE
Confidence 99999999988776654 466789999999974 678899999999999999998877765 57889999999986
Q ss_pred eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEec-CCcEE
Q 046871 355 IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILN-NRRHV 433 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~-dg~~l 433 (764)
|++++.|++|++||++++++...+ .+...|..++|+| |+++|
T Consensus 285 lasgs~D~~i~iwd~~~~~~~~~~-------------------------------------~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 285 LASISEDCTVAVLDADFSEVFRDL-------------------------------------SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EEEEETTSCEEEECTTSCEEEEEC-------------------------------------CCSSCEEEEEECSSSTTEE
T ss_pred EEEEeCCCEEEEEECCCCcEeEEC-------------------------------------CCCCCEEEEEEeCCCCCEE
Confidence 778999999999999876543322 1234578889998 89999
Q ss_pred EEeeCCCcEEEEEccccE
Q 046871 434 LTKDAAGSVKLWEITRGV 451 (764)
Q Consensus 434 ~t~s~dG~V~lWdi~tg~ 451 (764)
+|++.||+|++||+.+..
T Consensus 328 ~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEETTSCEEEEECC---
T ss_pred EEEcCCCeEEEEECCCCC
Confidence 999999999999997643
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-37 Score=370.14 Aligned_cols=291 Identities=17% Similarity=0.278 Sum_probs=262.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|.+.|+|++| ||++++|++|+.||.|+|||+.+ +..+..+.+|...|.+++|+|++ .|++++.||.|++||
T Consensus 11 ~h~~~v~~i~~-----sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 11 NRSDRVKGIDF-----HPTEPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EECSCEEEEEE-----CSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cCCCceEEEEE-----CCCCCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 89999999999 89999999999999999999988 67788999999999999999997 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ .+++.+..+.+|.+.|.+++|+ +++.+|++++.||.|++||+.++
T Consensus 84 ~-~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~-------------------------------- 129 (814)
T 3mkq_A 84 Y-NTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENN-------------------------------- 129 (814)
T ss_dssp T-TTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGT--------------------------------
T ss_pred C-CCCcEEEEEecCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCC--------------------------------
Confidence 7 5678888899999999999999 78999999999999999999753
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-cCeEEEEEcC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDS 269 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp 269 (764)
......+.+|...|.+++|+| +++.|++++.||.|++||+.+++....+..+. ..+.+++|+|
T Consensus 130 ---------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (814)
T 3mkq_A 130 ---------------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (814)
T ss_dssp ---------------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred ---------------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence 122344678899999999999 88999999999999999999988888777655 8999999999
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeE
Q 046871 270 --TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPIL 346 (764)
Q Consensus 270 --dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~ 346 (764)
++.+|++++.||.|++||+.+++++.++..|...|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.
T Consensus 195 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 274 (814)
T 3mkq_A 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274 (814)
T ss_dssp STTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998887766 467899
Q ss_pred EEEeeCCc---eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 347 QLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 347 ~l~~spd~---l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
+++|+|++ +++++.++.+.+|++....+...+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (814)
T 3mkq_A 275 CIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310 (814)
T ss_dssp EEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEEC
T ss_pred EEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEEC
Confidence 99999998 4777888999999988766554443
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-36 Score=323.18 Aligned_cols=292 Identities=24% Similarity=0.367 Sum_probs=250.1
Q ss_pred eEEEEEeCCCCCCCCCCeeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCCCC---CccceeecccccceeEEEEeCCC
Q 046871 21 RLTYVLNNSDDTKHCAGINCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLADDV---GSCSATFESHVDWVNDAVLVGDN 96 (764)
Q Consensus 21 ~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~V~~v~~s~d~ 96 (764)
.+...|+ ||++.|+||+| +|+ +++|+|||.||+|+|||+.+.. ..+...+.+|...|.+++|+|++
T Consensus 29 ~l~~tL~-----GH~~~V~~v~~-----sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 29 TLRGTLK-----GHNGWVTQIAT-----TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp EEEEEEC-----CCSSCEEEEEE-----CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEEEC-----CccCCEEEEEE-----eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC
Confidence 4444555 99999999999 676 6899999999999999997643 23467789999999999999997
Q ss_pred -eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 97 -TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 97 -~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
+|++++.|+.|++|+. ...........+...+..+.++ +++.+|++++.|+.+++||+....
T Consensus 99 ~~l~s~~~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~--------------- 161 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC--------------- 161 (340)
T ss_dssp SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCE---------------
T ss_pred CEEEEEcccccceEEee-cccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCc---------------
Confidence 8999999999999997 4566677777788888999998 788999999999999999987531
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG--NLLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g--~~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
.......+|...+..++|++++ .++++++.|+.|++||+++++.+.
T Consensus 162 --------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~ 209 (340)
T 4aow_A 162 --------------------------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209 (340)
T ss_dssp --------------------------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred --------------------------------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence 1123356788899999998754 578899999999999999999999
Q ss_pred EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 254 KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 254 ~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
.+.+|.+.|++++|+|++++|++|+.|++|++||+++.+++..+.. ...|.+++|+|++. +++++.|+.|++||++++
T Consensus 210 ~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTT
T ss_pred EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999998874 46899999999875 556667999999999988
Q ss_pred eEEEEee----------cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 334 ESLLLCT----------GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 334 ~~~~~~~----------~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
..+..+. +...|++++|+|++ |++|+.||.|++||+.+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 288 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 7765543 46689999999998 8999999999999998874
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.5e-36 Score=317.63 Aligned_cols=289 Identities=22% Similarity=0.358 Sum_probs=249.7
Q ss_pred CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.....++.+|...|++++|+|++ +|++++.|+.|++|++ ..++....+.+|...|.+++|+ +++++|++++.|+.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEc-CCCCEEEEECCCCEEE
Confidence 45577889999999999999997 8999999999999997 5577888899999999999999 7899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||+.++ .....+.+|...|.+++|+|++++|
T Consensus 91 vwd~~~~------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l 122 (312)
T 4ery_A 91 IWDVSSG------------------------------------------------KCLKTLKGHSNYVFCCNFNPQSNLI 122 (312)
T ss_dssp EEETTTC------------------------------------------------CEEEEEECCSSCEEEEEECSSSSEE
T ss_pred EEECCCC------------------------------------------------cEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 9999863 2234467889999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-eecCceEEEEEcC
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA-VHTDSVWALASTP 311 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-~h~~~V~~l~~sp 311 (764)
++|+.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++++..+. .+...+..++|+|
T Consensus 123 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999999888765 4566899999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeEEEEeec-CCCe--EEEEee-CCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcce
Q 046871 312 TFSHVYSGGRDLSLYLTDLATRESLLLCTG-EHPI--LQLALH-DDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFI 385 (764)
Q Consensus 312 d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~V--~~l~~s-pd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 385 (764)
++++|++++.||.|++||+.+++.+..+.. ...+ ....++ +++ +++++.|+.|++||+.+++....+.+|.
T Consensus 203 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--- 279 (312)
T 4ery_A 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--- 279 (312)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS---
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC---
Confidence 999999999999999999999998877653 2222 223343 444 8889999999999999887666554332
Q ss_pred eccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee--CCCcEEEEEcc
Q 046871 386 AGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD--AAGSVKLWEIT 448 (764)
Q Consensus 386 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s--~dG~V~lWdi~ 448 (764)
..|..++|+|++++|++++ .||+|++|+..
T Consensus 280 ---------------------------------~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 280 ---------------------------------DVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---------------------------------SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---------------------------------CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2366888999999999986 69999999864
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-36 Score=357.71 Aligned_cols=307 Identities=22% Similarity=0.340 Sum_probs=252.7
Q ss_pred ceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCC----CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCe
Q 046871 77 SATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSD----GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE 150 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~----~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~ 150 (764)
...+++|.+.|++++|++++ .|++|+.|++|++|++... +.....+.+|...|.+++|+ +++++|++|+.|+.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCEEEEEeCCCc
Confidence 35688999999999999874 8999999999999998543 23456788999999999999 78999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|++||+.++ .....+.+|...|.+++|+|+++
T Consensus 454 v~vwd~~~~------------------------------------------------~~~~~~~~h~~~v~~~~~s~~~~ 485 (694)
T 3dm0_A 454 LRLWDLAAG------------------------------------------------VSTRRFVGHTKDVLSVAFSLDNR 485 (694)
T ss_dssp EEEEETTTT------------------------------------------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEEECCCC------------------------------------------------cceeEEeCCCCCEEEEEEeCCCC
Confidence 999999863 22345678999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEe---ccCCcCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceE
Q 046871 231 LLVSGGTEKVVRVWDPRTGSKTIKL---RGHTDNIRSLLLDSTG--RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVW 305 (764)
Q Consensus 231 ~l~sgs~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg--~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~ 305 (764)
+|++|+.|+.|++||.......... .+|...|.+++|+|++ ..|++++.|++|++||++++++..++.+|.+.|+
T Consensus 486 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~ 565 (694)
T 3dm0_A 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565 (694)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 9999999999999998655333322 4688999999999987 5899999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcc
Q 046871 306 ALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 306 ~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
+++|+|++++|++|+.||.|++||+.+++.+..+.+...|.+++|+|++ +++++.++.|++||+.++..+..+..+...
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 645 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKA 645 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccc
Confidence 9999999999999999999999999999999888888899999999999 777777888999999998777666532211
Q ss_pred eeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 385 IAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 385 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
..... ....+.....+...+.+++|+|||++|++++.||.|++||+.+
T Consensus 646 ~~~~~-----------------~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 646 EAEKA-----------------DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccccc-----------------cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 10000 0000001111122367899999999999999999999999853
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-36 Score=328.54 Aligned_cols=306 Identities=23% Similarity=0.356 Sum_probs=243.1
Q ss_pred cEEEEeCCCCCCc--cceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccC-------------
Q 046871 63 TLKRWSLADDVGS--CSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHS------------- 126 (764)
Q Consensus 63 ~I~iWd~~~~~~~--~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~------------- 126 (764)
...+|+....... .+....+|...|.+++|+|++ +|+++ .++++++|++ .++..+..+..|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g-~~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~ 118 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSS 118 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE-CBSCEEEEET-TTCCEEEEECC---------------
T ss_pred eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEE-cCCcEEEEEe-cCCCEEEEecCccccccccccccccc
Confidence 4457765542111 112223699999999999998 56665 5789999997 4566666665443
Q ss_pred -----CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccc
Q 046871 127 -----DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201 (764)
Q Consensus 127 -----~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 201 (764)
..|.+++|+ +++++|++|+.|+.|++||+.++
T Consensus 119 ~~~~~~~v~~v~~s-~dg~~l~s~~~d~~i~iwd~~~~------------------------------------------ 155 (393)
T 1erj_A 119 SPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENR------------------------------------------ 155 (393)
T ss_dssp --CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTT------------------------------------------
T ss_pred cCCCceeEEEEEEC-CCCCEEEEEcCCCeEEEEECCCC------------------------------------------
Confidence 249999999 78999999999999999999763
Q ss_pred ccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCCEEEEEeCC
Q 046871 202 TSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSD 280 (764)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D 280 (764)
.....+.+|...|++++|+|++++|++|+.|+.|++||+++++....+. +...+.+++|+| ++++|++|+.|
T Consensus 156 ------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d 228 (393)
T 1erj_A 156 ------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLD 228 (393)
T ss_dssp ------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETT
T ss_pred ------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCC
Confidence 2334577899999999999999999999999999999999998887776 667899999999 89999999999
Q ss_pred CcEEEEeCCCCeeeEEE-------eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe------------EE-EEee
Q 046871 281 SMIRLWDLGQQRCIHSY-------AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE------------SL-LLCT 340 (764)
Q Consensus 281 g~I~iwdl~~~~~~~~l-------~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~------------~~-~~~~ 340 (764)
++|++||+++++++..+ .+|...|++++|+|++++|++|+.|+.|++||+++.. +. ....
T Consensus 229 ~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T 1erj_A 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308 (393)
T ss_dssp SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC
T ss_pred CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec
Confidence 99999999999888777 5789999999999999999999999999999997642 22 2334
Q ss_pred cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCC
Q 046871 341 GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGI 418 (764)
Q Consensus 341 ~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~ 418 (764)
|...|.+++|++++ +++++.|+.|++||+.++++...+.+|...+. +++|++.
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~-~v~~~~~------------------------ 363 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI-SVAVANG------------------------ 363 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSS------------------------
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE-EEEecCC------------------------
Confidence 67789999999998 89999999999999999888777765543322 2333220
Q ss_pred CCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 419 PGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 419 ~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
..++|++++|+|++.||+|++||+.+.
T Consensus 364 -----~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 364 -----SSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp -----CTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred -----cCcCCCCCEEEEECCCCcEEECccccc
Confidence 012347899999999999999998753
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-37 Score=369.44 Aligned_cols=383 Identities=9% Similarity=0.018 Sum_probs=274.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|...|++++| +| +++|++++.|++|++||+.+ ++++..+. |...|++++|+|++ +|++|+.||+|++||
T Consensus 56 ~~~~~V~~l~f-----sp-g~~L~S~s~D~~v~lWd~~~--~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd 126 (902)
T 2oaj_A 56 EDRSAIKEMRF-----VK-GIYLVVINAKDTVYVLSLYS--QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYD 126 (902)
T ss_dssp SSCCCEEEEEE-----ET-TTEEEEEETTCEEEEEETTT--CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEE-----cC-CCEEEEEECcCeEEEEECCC--CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 47889999999 68 78999999999999999998 56677775 67899999999997 899999999999999
Q ss_pred CCCCCeee-----------eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 112 CSSDGTCI-----------RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 112 ~~~~~~~~-----------~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
+. .+.+. ..+.+|.+.|.+++|+|.+...+++|+.|+.| +||+++.............
T Consensus 127 ~~-~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~--------- 195 (902)
T 2oaj_A 127 ID-RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP--------- 195 (902)
T ss_dssp TT-TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT---------
T ss_pred CC-CCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC---------
Confidence 84 34432 34567999999999996567899999999999 9999875332111000000
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--e---
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK--L--- 255 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~--l--- 255 (764)
+.. ... . .......|...|++++|+|+|++|++|+.||.|++||+++++.+.. +
T Consensus 196 g~~---------~~~-----------~-~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 196 FAP---------GGD-----------F-SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp TCC---------CST-----------T-CCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred cCC---------Ccc-----------c-ccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 000 000 0 0012345678899999999999999999999999999999887653 2
Q ss_pred cc-------------CCcCeEEEEEc----CCC-CEEEEEeC--------------------------------------
Q 046871 256 RG-------------HTDNIRSLLLD----STG-RYCLSGSS-------------------------------------- 279 (764)
Q Consensus 256 ~~-------------h~~~V~~l~~s----pdg-~~l~sgs~-------------------------------------- 279 (764)
.. |...|.+++|+ |++ .+|++|+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 11 34468888884 333 34444433
Q ss_pred --------------------------------------CCcEEEEeCCCCeeeEE-------------------------
Q 046871 280 --------------------------------------DSMIRLWDLGQQRCIHS------------------------- 296 (764)
Q Consensus 280 --------------------------------------Dg~I~iwdl~~~~~~~~------------------------- 296 (764)
|++|++||+.++.....
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~ 414 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN 414 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH
T ss_pred EEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH
Confidence 34455555544322111
Q ss_pred ----------------EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE----EE--e------ecCCCeEEE
Q 046871 297 ----------------YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL----LL--C------TGEHPILQL 348 (764)
Q Consensus 297 ----------------l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~----~~--~------~~~~~V~~l 348 (764)
+.+|...+.+++|+|++++|++|+.|++|++||+.++... .. + .|...|.++
T Consensus 415 ~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 415 KLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEE
T ss_pred HHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEE
Confidence 1223333444556789999999999999999999877421 11 1 456789999
Q ss_pred EeeCCc--eEEEeCCCcEEEeeCCCCC---------------------------------------------CceeeecC
Q 046871 349 ALHDDN--IWVATTDSSVHRWPAEGRN---------------------------------------------PQKVFQRG 381 (764)
Q Consensus 349 ~~spd~--l~~~s~dg~I~iwd~~~~~---------------------------------------------~~~~~~~~ 381 (764)
+|+|++ |++|+.|++|++|++.+++ +...+..|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999 9999999999999998663 13444454
Q ss_pred Ccceecccccccccc----ccCCCCCcccCCCCCC------cccc-C-CCCceEeEEe-----cCC---cEEEEeeCCCc
Q 046871 382 GSFIAGNLSFSRARV----SLEGSTPVSSRFKEPN------FTIP-G-IPGIVQHEIL-----NNR---RHVLTKDAAGS 441 (764)
Q Consensus 382 ~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~------~~i~-g-~~~i~~~~~s-----~dg---~~l~t~s~dG~ 441 (764)
.. .+.+++|+|+.. +.++.+.+|++..... ..+. | ...|.+++|+ ||| ++|++++.||+
T Consensus 575 ~~-~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KG-KTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SC-SEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CC-cEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 44 456888999762 2355666775433211 1222 4 3459999999 885 89999999999
Q ss_pred EEEEEc---cccEEeeecC
Q 046871 442 VKLWEI---TRGVVVEDYG 457 (764)
Q Consensus 442 V~lWdi---~tg~~i~~~~ 457 (764)
|++||+ .+|+++..|.
T Consensus 654 v~~wd~~p~~~g~~~~~~~ 672 (902)
T 2oaj_A 654 VITYKILPASGGKFDVQLM 672 (902)
T ss_dssp EEEEEEEECGGGCEEEEEE
T ss_pred EEEEEEecCCCCcEEEEec
Confidence 999999 8898887763
No 49
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-38 Score=351.98 Aligned_cols=308 Identities=13% Similarity=0.103 Sum_probs=231.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCcc--ceeecccccceeEEEEeCC-------CeEEEEeCCCcEEEecCCCCCe------
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSC--SATFESHVDWVNDAVLVGD-------NTLVSCSSDTTLKTWNCSSDGT------ 117 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~--~~~l~~h~~~V~~v~~s~d-------~~l~s~s~Dg~V~vWd~~~~~~------ 117 (764)
++|++++.||+|+|||+.++.... ..++.+|.+.|.+++|+|+ ++|++++.||+|++||+.....
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 344456688999999998743221 2456778899999999986 3899999999999999853321
Q ss_pred ----eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 118 ----CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 118 ----~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
....+.+|...|.+++|++ + ..|++|+.||+|++||++++.
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~--------------------------------- 298 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPE--------------------------------- 298 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCS---------------------------------
T ss_pred eecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCC---------------------------------
Confidence 1236778999999999994 3 589999999999999998631
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEE--EEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeccCCc--CeEEEEEc
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYAL--AMNDSG-NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD--NIRSLLLD 268 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l--~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~s 268 (764)
.....+.+|...|+++ +|++++ .+|++|+.|++|+|||+++++.+..+.+|.. .|.+++|+
T Consensus 299 --------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs 364 (524)
T 2j04_B 299 --------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC 364 (524)
T ss_dssp --------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE
T ss_pred --------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC
Confidence 1123367899999999 578887 8999999999999999999888777777764 58899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee------cC
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT------GE 342 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~------~~ 342 (764)
|+++.+++++.|++|++||++++.++.++.+|.+.|++++|+|++++|++|+.||+|++||+..+ .+.... ..
T Consensus 365 p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~ 443 (524)
T 2j04_B 365 PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKS 443 (524)
T ss_dssp TTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCC
T ss_pred CCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999998654 221111 11
Q ss_pred CCeEEEEeeCCc-eEEEeCCCcEEEeeCC-CCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCC
Q 046871 343 HPILQLALHDDN-IWVATTDSSVHRWPAE-GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPG 420 (764)
Q Consensus 343 ~~V~~l~~spd~-l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 420 (764)
..+.+++|+|++ ++.... .+.+|+.. ++.....+. .+...
T Consensus 444 ~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~------------------------------------gh~~~ 485 (524)
T 2j04_B 444 LRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID------------------------------------AHGIN 485 (524)
T ss_dssp CEEEECBCCSSSCEEEECC--CCCCCC-------------------------------------------------CCCS
T ss_pred eEEEEeccCCCCCeEEccC--CceecccccCCcceeeec------------------------------------CCCce
Confidence 246788999987 443222 22233221 111111111 12345
Q ss_pred ceEeEEecCC---cEEEEeeCCCcEEEEEcc
Q 046871 421 IVQHEILNNR---RHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 421 i~~~~~s~dg---~~l~t~s~dG~V~lWdi~ 448 (764)
|.+++|+|++ .+|++|+.||.|+||++.
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 7888999995 499999999999999986
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.2e-35 Score=312.43 Aligned_cols=280 Identities=20% Similarity=0.314 Sum_probs=248.4
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-ccceeec--ccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-SCSATFE--SHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-~~~~~l~--~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
+|...|++++| +|++++|++++ ||.|++||+.++.. .....+. .|...|.+++|+|++ .|++++.|+.|+
T Consensus 49 ~h~~~v~~~~~-----~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 49 NHGEVVCAVTI-----SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp CCSSCCCEEEE-----CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred cCCCceEEEEE-----ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 79999999999 79999999999 99999999987432 2233333 799999999999997 899999999999
Q ss_pred EecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 109 TWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 109 vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
+||+.... .....+..|...|.+++|+ ++++++++++.|+.|++||++++
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~---------------------------- 173 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQ---------------------------- 173 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTT----------------------------
T ss_pred EEECCCCCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCC----------------------------
Confidence 99984432 2566778899999999999 68999999999999999999863
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 267 (764)
.....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. |...+.+++|
T Consensus 174 --------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~ 232 (337)
T 1gxr_A 174 --------------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGY 232 (337)
T ss_dssp --------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred --------------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEE
Confidence 2233456788999999999999999999999999999999998888775 7889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEE
Q 046871 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQ 347 (764)
Q Consensus 268 spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~ 347 (764)
+|++++|++++.|+.|++||+.+++. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+....+...|.+
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~ 311 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 311 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEE
Confidence 99999999999999999999988775 46778999999999999999999999999999999999999888888999999
Q ss_pred EEeeCCc--eEEEeCCCcEEEeeC
Q 046871 348 LALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 348 l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
++|+|++ +++++.|+.|++|++
T Consensus 312 ~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 312 CDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEE
Confidence 9999998 889999999999986
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=314.84 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=258.0
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
||.+.|++++| +|++++|++|+.||.|++||+.+ ++.+..+.+|...|.+++|+|++ +|++++.|+.|++||
T Consensus 30 ~h~~~v~~~~~-----s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 30 GHERPLTQVKY-----NKEGDLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp CCSSCEEEEEE-----CTTSCEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EeeceEEEEEE-----cCCCCEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 89999999999 79999999999999999999988 67788999999999999999987 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG-----AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+ ..++++..+. |...|.+++|+ +++.++++++.+ +.|++||+...........
T Consensus 103 ~-~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------------- 160 (369)
T 3zwl_B 103 V-SNGQCVATWK-SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------------------- 160 (369)
T ss_dssp T-TTCCEEEEEE-CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE-------------------
T ss_pred C-CCCcEEEEee-cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecc-------------------
Confidence 8 4567777776 88999999999 789999999998 9999999986432211000
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeccCCcCeE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKE--SVYALAMNDSGNLLVSGGTEKVVRVWDPRT-GSKTIKLRGHTDNIR 263 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~ 263 (764)
...........|.. .+.+++|+|++++|++++.||.|++||+++ ++.+..+..|...|.
T Consensus 161 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 161 ------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp ------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred ------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 00111223444555 899999999999999999999999999998 788889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC--------------cEEEEe
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL--------------SLYLTD 329 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg--------------~I~iwd 329 (764)
+++|+|++++|++++.|+.|++||+++++++..+. +...+.+++|+|+++++++++.++ .+++||
T Consensus 223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred EEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 99999999999999999999999999999999888 788999999999999999999888 899999
Q ss_pred CCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCC
Q 046871 330 LATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 330 ~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~ 374 (764)
+.+++.+..+. +...|.+++|+|++ |++++.|+.|++|+++.+..
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 99999887776 67899999999998 89999999999999986543
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=309.82 Aligned_cols=288 Identities=20% Similarity=0.279 Sum_probs=252.8
Q ss_pred eeEEEEEeCCCCCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE
Q 046871 20 KRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL 98 (764)
Q Consensus 20 ~~~~~~~~~~~~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l 98 (764)
.++...+. ||.+.|++++| +++++|++|+.||.|++||+.+ ......+..|...|.+++|+|++ .|
T Consensus 8 ~~~~~~l~-----~h~~~v~~~~~------~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 8 YQLSATLK-----GHDQDVRDVVA------VDDSKVASVSRDGTVRLWSKDD--QWLGTVVYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp CEEEEEEC-----CCSSCEEEEEE------EETTEEEEEETTSEEEEEEESS--SEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred HHHHHHhh-----CCCCCcEEEEe------cCCCEEEEEEcCCcEEEEECCC--CEEEEEeecCCccEEEEEECCCCCEE
Confidence 34444554 99999999999 6789999999999999999987 66788889999999999999997 89
Q ss_pred EEEeCCCcEEEecCCCC--CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 99 VSCSSDTTLKTWNCSSD--GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~~--~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
++++.|+.|++|++... ......+..|...|.+++|. ++++++++.|+.|++||..
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~------------------- 132 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEG------------------- 132 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETT-------------------
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCC-------------------
Confidence 99999999999997543 35677888999999999995 6799999999999999922
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
.....+..|...+.++++.| +++++++++.|+.|++|| ..+....+
T Consensus 133 -------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~ 179 (313)
T 3odt_A 133 -------------------------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF 179 (313)
T ss_dssp -------------------------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred -------------------------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence 22344667899999999988 899999999999999999 55667777
Q ss_pred cc-CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 256 RG-HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 256 ~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
.. |...+.+++|+|++. +++++.||.|++||+++++++..+..|...|++++|+|++ .|++++.||.|++||+.+++
T Consensus 180 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 77 899999999999998 9999999999999999999999999999999999999999 68999999999999999999
Q ss_pred EEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCcee
Q 046871 335 SLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 335 ~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~ 377 (764)
.+..+. +..+|.+++|+|++ +++++.|+.|++|++.+++....
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 258 LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC-
T ss_pred eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeeh
Confidence 887776 45689999999999 89999999999999988765544
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=348.83 Aligned_cols=284 Identities=21% Similarity=0.378 Sum_probs=245.0
Q ss_pred CCCCCeeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCCCC---CccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 33 KHCAGINCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLADDV---GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~~~---~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
+|.+.|+||++ +++ +++|+||+.||+|++||+.+.. ......+.+|...|.+++|++++ +|++|+.|++|
T Consensus 380 ~H~~~V~~v~~-----~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 380 AHTDMVTAIAT-----PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp CCSSCEEEEEC-----CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceeEEEEe-----cCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999 555 5799999999999999997642 23456789999999999999997 89999999999
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
+|||+ ..+.+...+.+|...|.+++|+ +++.+|++|+.|++|++||+......
T Consensus 455 ~vwd~-~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~------------------------- 507 (694)
T 3dm0_A 455 RLWDL-AAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKY------------------------- 507 (694)
T ss_dssp EEEET-TTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEE-------------------------
T ss_pred EEEEC-CCCcceeEEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcce-------------------------
Confidence 99998 5678888999999999999999 78999999999999999997542100
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG--NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g--~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
.......+|...|.+++|+|++ ..|++|+.|+.|++||+++++....+.+|.+.|+++
T Consensus 508 --------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 508 --------------------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567 (694)
T ss_dssp --------------------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred --------------------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 0001135688899999999986 689999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC---
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE--- 342 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--- 342 (764)
+|+|++++|++|+.||+|++||+.+++++..+.. ...|.+++|+|++.++++++ |+.|++||++++..+..+...
T Consensus 568 ~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~ 645 (694)
T 3dm0_A 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKA 645 (694)
T ss_dssp EECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccc
Confidence 9999999999999999999999999999888864 56799999999998887765 566999999999877655321
Q ss_pred -----------------CCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 343 -----------------HPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 343 -----------------~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
..+++++|+|++ |++|+.||.|++|++.
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 137889999999 9999999999999985
No 54
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=316.76 Aligned_cols=296 Identities=15% Similarity=0.224 Sum_probs=258.1
Q ss_pred CccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
......+.+|...|++++|+|++ +|++++.|+.|++||+ ..++.+..+.+|...|.+++|+ +++++|++++.|+.|+
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVD-CFTKYCVTGSADYSIK 99 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTTEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEc-CCCCEEEEEeCCCeEE
Confidence 34456689999999999999997 8999999999999997 5678888999999999999999 6899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||+.++. ....+. +...|.+++|+|+++++
T Consensus 100 iwd~~~~~------------------------------------------------~~~~~~-~~~~v~~~~~~~~~~~l 130 (369)
T 3zwl_B 100 LWDVSNGQ------------------------------------------------CVATWK-SPVPVKRVEFSPCGNYF 130 (369)
T ss_dssp EEETTTCC------------------------------------------------EEEEEE-CSSCEEEEEECTTSSEE
T ss_pred EEECCCCc------------------------------------------------EEEEee-cCCCeEEEEEccCCCEE
Confidence 99998641 112222 67889999999999999
Q ss_pred EEEeCC-----CeEEEEeCCCCc-----------eeEEeccCCc--CeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cee
Q 046871 233 VSGGTE-----KVVRVWDPRTGS-----------KTIKLRGHTD--NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QRC 293 (764)
Q Consensus 233 ~sgs~d-----g~I~iwd~~~~~-----------~~~~l~~h~~--~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~~ 293 (764)
++++.+ +.|++||+..+. .+..+..|.. .+.+++|+|++++|++++.||.|++||+++ ++.
T Consensus 131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY 210 (369)
T ss_dssp EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE
T ss_pred EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe
Confidence 999999 999999987653 3445556666 999999999999999999999999999998 789
Q ss_pred eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCC---------
Q 046871 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDS--------- 362 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg--------- 362 (764)
+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+..++.+++|+|++ +++++.++
T Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999 88888887
Q ss_pred -----cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee
Q 046871 363 -----SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD 437 (764)
Q Consensus 363 -----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s 437 (764)
.+++||..++++...+..+ ...|..++|+||+++|++++
T Consensus 291 ~~~~~~i~~~d~~~~~~~~~~~~~------------------------------------~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEEEIGRVQGH------------------------------------FGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp ----CEEEEEETTTCCEEEEEECC------------------------------------SSCEEEEEECTTSSEEEEEE
T ss_pred CCCcceeEEEecCCCcchhheecc------------------------------------cCcEEEEEECCCCCEEEEEc
Confidence 7888888777665554322 23477889999999999999
Q ss_pred CCCcEEEEEccccEEeeec
Q 046871 438 AAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 438 ~dG~V~lWdi~tg~~i~~~ 456 (764)
.||.|++||+.++.....+
T Consensus 335 ~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 335 EDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp TTSEEEEEEECHHHHTCCC
T ss_pred CCCeEEEEECccccchhHH
Confidence 9999999999988766555
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.2e-36 Score=325.12 Aligned_cols=297 Identities=16% Similarity=0.183 Sum_probs=250.6
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC----CccceeecccccceeEEEEeCC----C----eE
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV----GSCSATFESHVDWVNDAVLVGD----N----TL 98 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~----~~~~~~l~~h~~~V~~v~~s~d----~----~l 98 (764)
..+|.+.|++++| +| ++|++|+.||.|++||+.+.. ......+.+|...|.+++|+++ + +|
T Consensus 12 ~~~h~~~i~~~~~-----~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 12 GKAHDADIFSVSA-----CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp SSCSSSCEEEEEE-----CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhcCeEEEEe-----cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 4599999999999 56 899999999999999998843 2368888999999999999998 5 78
Q ss_pred EEEeCCCcEEEecCCCCCee-----eeecccc-----CCceEEEEEec---CCCcE-EEEEeCCCeEEEEeCCC------
Q 046871 99 VSCSSDTTLKTWNCSSDGTC-----IRTLRQH-----SDYVTCLAAAE---KNSNI-VASGGLGAEVFIWDIEA------ 158 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~~~~~-----~~~l~~h-----~~~V~~l~~~p---~~~~~-lasg~~dg~I~iwdl~~------ 158 (764)
++++.|+.|++|++. .+.. ...+..| ...|.+++|++ +++.+ |++++.|+.|++||+..
T Consensus 85 ~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRIT-REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEE-ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEcc-CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 999999999999974 3444 6777888 58999999992 35677 99999999999999986
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE 238 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d 238 (764)
........ ...+ .........|...|.+++|+|++ +|++|+.|
T Consensus 164 ~~~~~~~~-------------------~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 206 (397)
T 1sq9_A 164 SLTLNWSP-------------------TLEL-----------------QGTVESPMTPSQFATSVDISERG-LIATGFNN 206 (397)
T ss_dssp HTTTCCCC-------------------EEEE-----------------EEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred cceeeccC-------------------ccee-----------------eeeeccccCCCCCceEEEECCCc-eEEEEeCC
Confidence 21110000 0000 00000114578889999999999 99999999
Q ss_pred CeEEEEeCCCCceeEEecc---C---CcCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeeEEEee----------
Q 046871 239 KVVRVWDPRTGSKTIKLRG---H---TDNIRSLLLDSTGRYCLSGSSD---SMIRLWDLGQQRCIHSYAV---------- 299 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~~---h---~~~V~~l~~spdg~~l~sgs~D---g~I~iwdl~~~~~~~~l~~---------- 299 (764)
+.|++||+++++.+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++++..+..
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence 9999999999999999998 9 9999999999999999999999 9999999999999999998
Q ss_pred ---ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-------c---------------CCCeEEEEeeCC-
Q 046871 300 ---HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-------G---------------EHPILQLALHDD- 353 (764)
Q Consensus 300 ---h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-------~---------------~~~V~~l~~spd- 353 (764)
|...|.+++|+|++++|++++.||.|++||+.+++.+..+. + ..+|.+++|+|+
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 99999999999999999999999999999999999888777 3 788999999999
Q ss_pred ----------c-eEEEeCCCcEEEeeCCCC
Q 046871 354 ----------N-IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 354 ----------~-l~~~s~dg~I~iwd~~~~ 372 (764)
. +++++.|+.|++|++.++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCC
Confidence 3 889999999999999765
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.2e-35 Score=321.03 Aligned_cols=279 Identities=13% Similarity=0.163 Sum_probs=235.5
Q ss_pred CCCCCCeeEEEeecccccCCC-cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeC-CC-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGV-DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVG-DN-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~-~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~-d~-~l~s~s~Dg~V~ 108 (764)
.+|...|+|++| +|++ ++|++|+.||.|++||+.+........+.+|...|.+++|+| ++ .|++++.|+.|+
T Consensus 70 ~~h~~~v~~~~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 70 SPFDRRVTSLEW-----HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp CCCSSCEEEEEE-----CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred cCCCCCEEEEEE-----CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 489999999999 7888 899999999999999999844433333457999999999999 44 899999999999
Q ss_pred EecCCCCCeeeeeccc---cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 109 TWNCSSDGTCIRTLRQ---HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~---h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+||+. +.....+.. |...|.+++|+ +++.+|++++.|+.|++||++.
T Consensus 145 iwd~~--~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~--------------------------- 194 (383)
T 3ei3_B 145 LRDFS--GSVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGLDG--------------------------- 194 (383)
T ss_dssp EEETT--SCEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEETTS---------------------------
T ss_pred EEECC--CCceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEECCC---------------------------
Confidence 99984 345555543 44889999999 7899999999999999999852
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC----CceeEEeccCCc
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRT----GSKTIKLRGHTD 260 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~----~~~~~~l~~h~~ 260 (764)
.....+..|...|.+++|+|+++ +|++|+.|+.|++||+++ +..+..+ +|..
T Consensus 195 ----------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~ 251 (383)
T 3ei3_B 195 ----------------------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK 251 (383)
T ss_dssp ----------------------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS
T ss_pred ----------------------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC
Confidence 12344678899999999999998 999999999999999988 5566666 6999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec-----------------CceEEEEEcCCCCEEEEecCC
Q 046871 261 NIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-----------------DSVWALASTPTFSHVYSGGRD 322 (764)
Q Consensus 261 ~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-----------------~~V~~l~~spd~~~l~sgs~D 322 (764)
.|.+++|+| ++++|++++.|+.|++||+++++++..+..|. +.+..++|+|++++ +++.|
T Consensus 252 ~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 999999999 99999999999999999999988888877664 34455777777776 88899
Q ss_pred CcEEEEeCCCCeEEEEee---cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 323 LSLYLTDLATRESLLLCT---GEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 323 g~I~iwd~~~~~~~~~~~---~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
|.|++||+.+++.+..+. +...+.+++|+|++ |++++ |+.|++||+++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999999999888876 35567788999999 66665 99999999874
No 57
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-35 Score=321.75 Aligned_cols=314 Identities=13% Similarity=0.139 Sum_probs=253.1
Q ss_pred cceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe------eeeeccccCCceEEEEEecCC----C---cEE
Q 046871 76 CSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT------CIRTLRQHSDYVTCLAAAEKN----S---NIV 142 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~------~~~~l~~h~~~V~~l~~~p~~----~---~~l 142 (764)
....+.+|.+.|++++|+| ++|++++.||+|++|++.. +. ....+..|...|.+++|+ ++ + .+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVL-QAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEE-EEEETTTEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEe-cccccCCccccEE
Confidence 4566789999999999999 8999999999999999844 44 677888999999999999 56 8 899
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC-----C
Q 046871 143 ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH-----K 217 (764)
Q Consensus 143 asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~ 217 (764)
++++.|+.|++||+.+..... ......+..| .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~ 121 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETK-------------------------------------------KVIFEKLDLLDSDMKK 121 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTC-------------------------------------------CEEEEEECCSCTTGGG
T ss_pred EEEcCCCCEEEEEccCCcccc-------------------------------------------cccceeecccccccCC
Confidence 999999999999998642100 0112334556 5
Q ss_pred CcEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CceeE-----Ee-------ccCCcCeEEEEEcCCCCEE
Q 046871 218 ESVYALAMN----DSGNL-LVSGGTEKVVRVWDPRT------GSKTI-----KL-------RGHTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 218 ~~V~~l~~s----p~g~~-l~sgs~dg~I~iwd~~~------~~~~~-----~l-------~~h~~~V~~l~~spdg~~l 274 (764)
..|.+++|+ |++++ |++++.||.|++||+++ ++.+. .+ ..|...|.+++|+|++ +|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence 899999999 99999 99999999999999998 66666 67 4488999999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCeeeEEEee---e---cCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCeEEEEee-----
Q 046871 275 LSGSSDSMIRLWDLGQQRCIHSYAV---H---TDSVWALASTPTFSHVYSGGRD---LSLYLTDLATRESLLLCT----- 340 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~~~~~~l~~---h---~~~V~~l~~spd~~~l~sgs~D---g~I~iwd~~~~~~~~~~~----- 340 (764)
++++.|+.|++||+++++++..+.. | ...|.+++|+|++++|++++.| |.|++||+.+++.+..+.
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 9999999999999999999999998 9 9999999999999999999999 999999999998887766
Q ss_pred ---------cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCC
Q 046871 341 ---------GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFK 409 (764)
Q Consensus 341 ---------~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 409 (764)
+...|.+++|+|++ |++++.|+.|++||+.++++...+..+..... ... .. ...
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~--~~---------~~g 345 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE----IEE--DI---------LAV 345 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS----SGG--GC---------CCB
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc----chh--hh---------hcc
Confidence 67889999999998 89999999999999999887776652100000 000 00 000
Q ss_pred CCCccccCCCCceEeEEecCC----------cEEEEeeCCCcEEEEEccccE
Q 046871 410 EPNFTIPGIPGIVQHEILNNR----------RHVLTKDAAGSVKLWEITRGV 451 (764)
Q Consensus 410 ~~~~~i~g~~~i~~~~~s~dg----------~~l~t~s~dG~V~lWdi~tg~ 451 (764)
.....-.+...|..++|++|+ ++|++++.||.|++||+.+|+
T Consensus 346 ~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 346 DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 000011124568999999998 799999999999999999874
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.8e-35 Score=320.14 Aligned_cols=291 Identities=11% Similarity=0.102 Sum_probs=239.1
Q ss_pred CccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeeec--cccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 74 GSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRTL--RQHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~l--~~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
......+.+|...|++++|+|++ +|++++.|+.|++||+. .+.....+ .+|...|.+++|+|.++++|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 45567788999999999999986 89999999999999984 34444444 469999999999954789999999999
Q ss_pred eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC
Q 046871 150 EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG 229 (764)
Q Consensus 150 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 229 (764)
.|++||+.+... ........|...|.+++|+|++
T Consensus 142 ~i~iwd~~~~~~----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 142 ATTLRDFSGSVI----------------------------------------------QVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp EEEEEETTSCEE----------------------------------------------EEEECCCCSSCCEEEEEEETTT
T ss_pred EEEEEECCCCce----------------------------------------------EEEeccCCCCCCeEEEEECCCC
Confidence 999999974210 0011123456889999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC----CeeeEEEeeecCce
Q 046871 230 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQ----QRCIHSYAVHTDSV 304 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~----~~~~~~l~~h~~~V 304 (764)
++|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++.|++|++||+++ +.++..+ .|...|
T Consensus 176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v 253 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPV 253 (383)
T ss_dssp TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCE
T ss_pred CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCce
Confidence 99999999999999999 5788899999999999999999999 999999999999999987 6677777 699999
Q ss_pred EEEEEcC-CCCEEEEecCCCcEEEEeCCCCeEEEEee-c-----------------CCCeEEEEeeCCc-eEEEeCCCcE
Q 046871 305 WALASTP-TFSHVYSGGRDLSLYLTDLATRESLLLCT-G-----------------EHPILQLALHDDN-IWVATTDSSV 364 (764)
Q Consensus 305 ~~l~~sp-d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~-----------------~~~V~~l~~spd~-l~~~s~dg~I 364 (764)
++++|+| ++.+|++++.|+.|++||+++++....+. + ...+..++++|++ + +++.|+.|
T Consensus 254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i 332 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTI 332 (383)
T ss_dssp EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCE
T ss_pred EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeE
Confidence 9999999 99999999999999999999876544433 1 1345567777777 6 77789999
Q ss_pred EEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEE
Q 046871 365 HRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKL 444 (764)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~l 444 (764)
++||+.+++....+..+.. ...+..++|++|+++|++++ ||.|++
T Consensus 333 ~iwd~~~~~~~~~l~~~~~----------------------------------~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 333 DIYDANSGGLVHQLRDPNA----------------------------------AGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEEETTTCCEEEEECBTTB----------------------------------CSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEEecCCCceeeeecCCCC----------------------------------CceEEEEEEecCccEEEEec-CCcEEE
Confidence 9999998887666543210 11234458999999999997 999999
Q ss_pred EEccc
Q 046871 445 WEITR 449 (764)
Q Consensus 445 Wdi~t 449 (764)
||+.+
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99874
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.9e-36 Score=330.25 Aligned_cols=287 Identities=14% Similarity=0.163 Sum_probs=229.7
Q ss_pred CCCCCeeEEEeecccccC-CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeC-CC-eEEEEeCCCcEEE
Q 046871 33 KHCAGINCLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVG-DN-TLVSCSSDTTLKT 109 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~-d~-~l~s~s~Dg~V~v 109 (764)
+|...|+||+| +| ++++||+|+.||.|+|||+.++.......+.+|.+.|++++|+| ++ +|++++.|++|++
T Consensus 117 ~~~~~V~~l~~-----~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 117 PFDRRATSLAW-----HPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp ECSSCEEEEEE-----CSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCCCEEEEEE-----eCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 68899999999 56 56799999999999999998866666777889999999999997 44 8999999999999
Q ss_pred ecCCCCCeeeeec--cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 110 WNCSSDGTCIRTL--RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 110 Wd~~~~~~~~~~l--~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
||+. .+...... ..+...+.+++|+ +++.+|++|+.||.|++||++..
T Consensus 192 wd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~~~---------------------------- 241 (435)
T 4e54_B 192 QDFK-GNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMDGK---------------------------- 241 (435)
T ss_dssp EETT-SCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESSSC----------------------------
T ss_pred eecc-CCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccCcc----------------------------
Confidence 9983 23222222 2334567899999 78999999999999999998642
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEE---eccCCcCeE
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTIK---LRGHTDNIR 263 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~~---l~~h~~~V~ 263 (764)
....+.+|...|++++|+|++. +|++|+.|+.|++||+++.+.... ..+|...|+
T Consensus 242 ---------------------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 300 (435)
T 4e54_B 242 ---------------------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300 (435)
T ss_dssp ---------------------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred ---------------------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence 1123567899999999999875 788999999999999988765433 357999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc------eEEEEEcCCCCEEEEec------------CCCcE
Q 046871 264 SLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS------VWALASTPTFSHVYSGG------------RDLSL 325 (764)
Q Consensus 264 ~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~------V~~l~~spd~~~l~sgs------------~Dg~I 325 (764)
+++|+|+|++|++++.||+|++||+.++.+...+..|... +....|+|++.++++++ .++.|
T Consensus 301 ~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp ECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred ceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 9999999999999999999999999999888887766532 33456777776666554 34579
Q ss_pred EEEeCCCCeEEEEee--cCCCeEEE-EeeCCc-eEEEeCCCcEEEeeCCCCCCc
Q 046871 326 YLTDLATRESLLLCT--GEHPILQL-ALHDDN-IWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 326 ~iwd~~~~~~~~~~~--~~~~V~~l-~~spd~-l~~~s~dg~I~iwd~~~~~~~ 375 (764)
++||..+++.+..+. +...|.++ +|+|++ +++++.|+.|++|+++++++.
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 999999999887664 56678877 699999 555566899999999987653
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-35 Score=317.18 Aligned_cols=280 Identities=16% Similarity=0.253 Sum_probs=238.1
Q ss_pred CCCCCeeEEEeecccccC----CCcEEEEEeCCCcEEEEeCCCCCCccceeecc-----cccceeEEEEeCC----C-eE
Q 046871 33 KHCAGINCLAVLKSSVSN----GVDYLFTGSRDGTLKRWSLADDVGSCSATFES-----HVDWVNDAVLVGD----N-TL 98 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~----d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~-----h~~~V~~v~~s~d----~-~l 98 (764)
||.+.|++++| +| ....+++++.++.|++||+.+ ...+..+.. |...|.+++|+++ + +|
T Consensus 16 ~h~~~v~~i~~-----~p~~~~~~~~~~~~~~~~~v~vw~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 16 DHNQPLFGVQF-----NWHSKEGDPLVFATVGSNRVTLYECHS--QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TTCSCEEEEEE-----CTTCCTTSCEEEEEEETTEEEEEEECG--GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCCceEEEEE-----ecccCCCCceEEEECCCCEEEEEEcCC--CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 89999999999 55 245666666777999999987 444555543 5578999999998 4 79
Q ss_pred EEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 99 VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 99 ~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
++++.|+.|++||+ ..++.+..+.+|...|.+++|+|.++.+|++++.||.|++||++++.
T Consensus 89 ~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------ 149 (366)
T 3k26_A 89 AVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------------------ 149 (366)
T ss_dssp EEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------------------
T ss_pred EEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------------------
Confidence 99999999999997 45788888999999999999995489999999999999999998632
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCcccee---ccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIA---AKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
.... ...|...|.+++|+|++++|++++.||.|++||+++++....+
T Consensus 150 ------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 150 ------------------------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp ------------------------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred ------------------------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 1122 2578999999999999999999999999999999987655444
Q ss_pred c----------------------------cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--------------
Q 046871 256 R----------------------------GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC-------------- 293 (764)
Q Consensus 256 ~----------------------------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~-------------- 293 (764)
. +|...|.+++|+ +++|++++.|+.|++||+.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 277 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhe
Confidence 3 399999999999 77999999999999999987643
Q ss_pred eEEEeeecCceEEEEEcCC--CCEEEEecCCCcEEEEeCCCCeEE----EEee-c--CCCeEEEEeeCCc--eEEEeCCC
Q 046871 294 IHSYAVHTDSVWALASTPT--FSHVYSGGRDLSLYLTDLATRESL----LLCT-G--EHPILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~spd--~~~l~sgs~Dg~I~iwd~~~~~~~----~~~~-~--~~~V~~l~~spd~--l~~~s~dg 362 (764)
+..+..|...|++++|+|+ +++|++|+.||.|++||+.+++.. ..+. + ..+|.+++|+|++ |++++.||
T Consensus 278 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 7888899999999999999 999999999999999999987532 2343 3 5899999999998 89999999
Q ss_pred cEEEeeCC
Q 046871 363 SVHRWPAE 370 (764)
Q Consensus 363 ~I~iwd~~ 370 (764)
.|++||+.
T Consensus 358 ~i~iwd~~ 365 (366)
T 3k26_A 358 SIWRWDRL 365 (366)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEec
Confidence 99999985
No 61
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.9e-35 Score=306.17 Aligned_cols=249 Identities=19% Similarity=0.229 Sum_probs=213.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V~ 108 (764)
.||.+.|++++| +|+|++||+|+.||+|+|||+.....+++.++.+|.+.|.+++|+++ + +|++++.|++|+
T Consensus 6 ~~h~~~V~~~~~-----s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 6 NAHNEMIHDAVM-----DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CSCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred cCCcCceEEEEE-----CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 489999999999 89999999999999999999986556778999999999999999863 4 899999999999
Q ss_pred EecCCCCC-eeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 109 TWNCSSDG-TCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 109 vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+||+.... ..+..+..|...|.+++|+|. .+.+|++++.|+.|++||+++...
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------------------------- 135 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------------------------- 135 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-------------------------
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-------------------------
Confidence 99984322 355677889999999999943 278999999999999999975310
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-------------CCEEEEEeCCCeEEEEeCCCCc---
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-------------GNLLVSGGTEKVVRVWDPRTGS--- 250 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-------------g~~l~sgs~dg~I~iwd~~~~~--- 250 (764)
.....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++
T Consensus 136 ---------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~ 194 (297)
T 2pm7_B 136 ---------------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (297)
T ss_dssp ---------------------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE
T ss_pred ---------------------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE
Confidence 011235678999999999996 5799999999999999998876
Q ss_pred -eeEEeccCCcCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCe---eeEEE--eeecCceEEEEEcCCCCEEEEecC
Q 046871 251 -KTIKLRGHTDNIRSLLLDSTG---RYCLSGSSDSMIRLWDLGQQR---CIHSY--AVHTDSVWALASTPTFSHVYSGGR 321 (764)
Q Consensus 251 -~~~~l~~h~~~V~~l~~spdg---~~l~sgs~Dg~I~iwdl~~~~---~~~~l--~~h~~~V~~l~~spd~~~l~sgs~ 321 (764)
....+.+|.+.|.+++|+|++ .+|++++.|++|++||++... ....+ ..|...|++++|+|++++|++++.
T Consensus 195 ~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 195 VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 566789999999999999985 899999999999999997642 22233 467889999999999999999999
Q ss_pred CCcEEEEeCC
Q 046871 322 DLSLYLTDLA 331 (764)
Q Consensus 322 Dg~I~iwd~~ 331 (764)
||.|++|+..
T Consensus 275 D~~v~lw~~~ 284 (297)
T 2pm7_B 275 DNKVTLWKEN 284 (297)
T ss_dssp TSCEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 9999999976
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.3e-35 Score=352.03 Aligned_cols=358 Identities=19% Similarity=0.273 Sum_probs=289.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|...|++++| +|++++|++|+.||.|++||+.+ ++.+..+.+|.+.|.+++|+|++ .|++++.||+|++||
T Consensus 53 ~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 53 VTETPVRAGKF-----IARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp CCSSCEEEEEE-----EGGGTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEE-----eCCCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 79999999999 78999999999999999999998 67788899999999999999997 899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+.........+.+|...|.+++|+|.++..+++++.||.|++||+.+....
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~----------------------------- 176 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----------------------------- 176 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-----------------------------
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-----------------------------
Confidence 865557788889999999999999548899999999999999999763111
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND--SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp--~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
......+...+.+++|+| ++.+|++|+.||.|++||+++++.+..+.+|...|.+++|+|
T Consensus 177 ------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 177 ------------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp ------------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred ------------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 111233457899999999 999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCE-EEEecCCCcEEEEeCCCCeEEEEe---------
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSH-VYSGGRDLSLYLTDLATRESLLLC--------- 339 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~-l~sgs~Dg~I~iwd~~~~~~~~~~--------- 339 (764)
++++|++++.||.|++||+.+++.+..+..|...+++++|+|++.. +++++.++.+.+|++........+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence 9999999999999999999999999999999999999999999874 244455777888887643211111
Q ss_pred -----------------------------------ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCC
Q 046871 340 -----------------------------------TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 340 -----------------------------------~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
.+...+.+++|+|++ +++++ ++.+.+|++.......
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~------ 391 (814)
T 3mkq_A 319 GGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA------ 391 (814)
T ss_dssp CCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE------
T ss_pred CcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC------
Confidence 112357899999999 55555 9999999976432211
Q ss_pred cceeccccccccccc-----cCCCCCcccCCCCCCccccCCCCceEeEEecCC---cEEEEeeCCCcEEEEEccccEEee
Q 046871 383 SFIAGNLSFSRARVS-----LEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNR---RHVLTKDAAGSVKLWEITRGVVVE 454 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg---~~l~t~s~dG~V~lWdi~tg~~i~ 454 (764)
......++|+|+... .++...++. ....+...+..+.|++|+ ++|++++.||.|++||+.+|+++.
T Consensus 392 ~~~i~~~~~spdg~~la~~~~~g~v~l~~------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~ 465 (814)
T 3mkq_A 392 FGKCQDFVWGPDSNSYALIDETGQIKYYK------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR 465 (814)
T ss_dssp EEECSEEEECTTSSCEEEECTTCCEEEEE------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEE
T ss_pred CCceEEEEEeCCCCeEEEEeCCCcEEEEE------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEE
Confidence 122346677765432 233333331 111223457888999998 689999999999999999999998
Q ss_pred ecC
Q 046871 455 DYG 457 (764)
Q Consensus 455 ~~~ 457 (764)
.+.
T Consensus 466 ~~~ 468 (814)
T 3mkq_A 466 RID 468 (814)
T ss_dssp EES
T ss_pred EEe
Confidence 874
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-35 Score=316.16 Aligned_cols=288 Identities=15% Similarity=0.155 Sum_probs=247.8
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
.|..+|++++| +|++++|++|+.||.|++||+.++..+....+.+|...|.+++|+|++ +|++++.|+.|++||
T Consensus 6 ~~~~~i~~~~~-----s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 6 FLVEPISCHAW-----NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp SCSSCCCEEEE-----CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCCeEEEEE-----CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 58999999999 799999999999999999999884333788899999999999999987 899999999999999
Q ss_pred CCCCCee--eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 112 CSSDGTC--IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 112 ~~~~~~~--~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
+. .++. ...+..|...|.+++|+ +++++|++++.|+.|++||++.....
T Consensus 81 ~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~--------------------------- 131 (372)
T 1k8k_C 81 LK-GRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDW--------------------------- 131 (372)
T ss_dssp EE-TTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTE---------------------------
T ss_pred CC-CCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcc---------------------------
Confidence 84 3443 33456799999999999 78999999999999999999763110
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC------------------CCCce
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDP------------------RTGSK 251 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~------------------~~~~~ 251 (764)
.........|...|.+++|+|++++|++|+.||.|++||+ ..++.
T Consensus 132 -----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 132 -----------------WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp -----------------EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred -----------------eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 0011223567889999999999999999999999999995 46788
Q ss_pred eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 252 TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 252 ~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
+..+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+..|...|.+++|+|++.+|++| .|+.|++|++.
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 88999999999999999999999999999999999999999999999999999999999999988888 89999999998
Q ss_pred C--CeE---------------------------------------EEE-eecCCCeEEEEee-CC----c-eEEEeCCCc
Q 046871 332 T--RES---------------------------------------LLL-CTGEHPILQLALH-DD----N-IWVATTDSS 363 (764)
Q Consensus 332 ~--~~~---------------------------------------~~~-~~~~~~V~~l~~s-pd----~-l~~~s~dg~ 363 (764)
+ +.. ... ..|..+|++++|+ ++ . +++++.||.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence 7 421 111 2467899999966 65 4 999999999
Q ss_pred EEEeeCCCC
Q 046871 364 VHRWPAEGR 372 (764)
Q Consensus 364 I~iwd~~~~ 372 (764)
|++|++.++
T Consensus 354 i~~W~~~~~ 362 (372)
T 1k8k_C 354 MSIWDVRSL 362 (372)
T ss_dssp EEEEEHHHH
T ss_pred eEEEEecCh
Confidence 999998754
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=312.59 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=233.9
Q ss_pred CCCCCeeEEEeecccccCCCcEE-EEEeC---CCcEEEEeCCCCCCccceeecccccceeEEEEeCC----CeEEEEeCC
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYL-FTGSR---DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD----NTLVSCSSD 104 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L-~sgs~---Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d----~~l~s~s~D 104 (764)
+|...|++++| +|++..| ++|+. ||.|++||+.++.... ....+|...|.+++|+|+ ..|++++.|
T Consensus 16 ~h~~~v~~~~~-----~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 16 GFNYTVFDCKW-----VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp ECSSCEEEEEE-----CTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCCCceEEEEE-----cCCCceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 79999999999 7888654 56665 9999999999843222 223378999999999998 489999999
Q ss_pred CcEEEecCCCCCeeeeeccccCCceEEEEEec-----CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 105 TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAE-----KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 105 g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p-----~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
+.|++||+......+..+.+|...|.+++|.+ +++++|++++.|+.|++||+.+....
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~----------------- 152 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP----------------- 152 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-----------------
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-----------------
Confidence 99999998554437888999999999997642 67889999999999999999874211
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCC----CCcEEEEE----EcCCCCEEEEEeCCCeEEEEeCCCCce
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH----KESVYALA----MNDSGNLLVSGGTEKVVRVWDPRTGSK 251 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~V~~l~----~sp~g~~l~sgs~dg~I~iwd~~~~~~ 251 (764)
...+..| ...+.+++ |+|++++|++++.||.|++||+++++.
T Consensus 153 ------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 153 ------------------------------VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp ------------------------------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred ------------------------------ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence 1112222 34788888 788999999999999999999999887
Q ss_pred eEEeccCCcCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeeeEEEe-----eecCceEEEEEcCCCC-EEEEecCC
Q 046871 252 TIKLRGHTDNIRSLLLDS---TGRYCLSGSSDSMIRLWDLGQQRCIHSYA-----VHTDSVWALASTPTFS-HVYSGGRD 322 (764)
Q Consensus 252 ~~~l~~h~~~V~~l~~sp---dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-----~h~~~V~~l~~spd~~-~l~sgs~D 322 (764)
... ..|...|.+++|+| ++.+|++++.||.|++||+++++++..+. .|...|++++|+|+++ +|++++.|
T Consensus 203 ~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 203 RWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp EEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred eee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 544 56889999999999 99999999999999999998877665554 8999999999999998 89999999
Q ss_pred CcEEEEeCCCCe-------------------EEEEe-ecCCCeEEEEeeCCc--eE-EEeCCCcEEEeeCCCCC
Q 046871 323 LSLYLTDLATRE-------------------SLLLC-TGEHPILQLALHDDN--IW-VATTDSSVHRWPAEGRN 373 (764)
Q Consensus 323 g~I~iwd~~~~~-------------------~~~~~-~~~~~V~~l~~spd~--l~-~~s~dg~I~iwd~~~~~ 373 (764)
|.|++||++.+. .+..+ .+..+|.+++|+|++ ++ +++.|+.|++|++.+.+
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999997542 23333 367899999999998 66 78999999999998654
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=329.56 Aligned_cols=362 Identities=14% Similarity=0.147 Sum_probs=267.6
Q ss_pred CCCCCeeEEEeecc-----cccCCCcEEEEEeCCCcEEEEeCCCCCCccceee-cccccceeEEEEeC-CC-eEEEEeCC
Q 046871 33 KHCAGINCLAVLKS-----SVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVG-DN-TLVSCSSD 104 (764)
Q Consensus 33 gH~~~V~~l~~~~~-----~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~-~l~s~s~D 104 (764)
.|..-+..+.+.|. .|+|+++.+++++ .|+.. ++.+..+ .+|.+.|++++|+| ++ +|++|+.|
T Consensus 15 ~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~~~---g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d 85 (437)
T 3gre_A 15 SIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGNLR---GKLIATLMENEPNSITSSAVSPGETPYLITGSDQ 85 (437)
T ss_dssp CCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGGCC---CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT
T ss_pred HHHHHhccCCCCCChhchhhcCCccccccccc------ccccc---ceEEeeeccCCCCceEEEEECCCCCCEEEEecCC
Confidence 45555555555543 3688998888765 48754 5678888 89999999999999 76 89999999
Q ss_pred CcEEEecCCCC--Ce---eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCC---CCCCCCCCCCCcCCcCcc
Q 046871 105 TTLKTWNCSSD--GT---CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEA---ALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 105 g~V~vWd~~~~--~~---~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~---~~~~~~~~~~~~~~~~~~ 176 (764)
++|++||+... +. ....+ .|...|.+++|+ +++.+|++++.||.|++||+.. +.....
T Consensus 86 g~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~------------ 151 (437)
T 3gre_A 86 GVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKF------------ 151 (437)
T ss_dssp SEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEE------------
T ss_pred ceEEEeECcccccCcccceeeec-cCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeec------------
Confidence 99999997330 21 12222 589999999999 7899999999999999999952 110000
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccC--CCCcEEEEE--EcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG--HKESVYALA--MNDSGNLLVSGGTEKVVRVWDPRTGSKT 252 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~V~~l~--~sp~g~~l~sgs~dg~I~iwd~~~~~~~ 252 (764)
.... ......+.. +...+.++. +++++.+|++|+.|+.|++||+++++.+
T Consensus 152 ------------------------~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 152 ------------------------LNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205 (437)
T ss_dssp ------------------------EEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred ------------------------cccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence 0000 000011111 566788888 6689999999999999999999999999
Q ss_pred EEecc--CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe-eecCceEEEEEc----CCCCEEEEecCCCcE
Q 046871 253 IKLRG--HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA-VHTDSVWALAST----PTFSHVYSGGRDLSL 325 (764)
Q Consensus 253 ~~l~~--h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~-~h~~~V~~l~~s----pd~~~l~sgs~Dg~I 325 (764)
..+.+ |.+.|++++|+|++++|++|+.||+|++||+++++++.++. .|...|.+++|+ |++.+|++|+.||.|
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 99988 89999999999999999999999999999999999999987 788899999665 467799999999999
Q ss_pred EEEeCCCCeEEEEee---------------------------cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCcee
Q 046871 326 YLTDLATRESLLLCT---------------------------GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 326 ~iwd~~~~~~~~~~~---------------------------~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~ 377 (764)
++||+++++.+..+. +...|++++|+++. +++++.|+.|++||+.+++....
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceE
Confidence 999999998777665 34458999999554 89999999999999999998888
Q ss_pred eecCCcce--eccccccccccc-cCCCCCcccCCCCCCc-cccCCCCceEeEEecC--CcEEEEeeCCCcEEEEE
Q 046871 378 FQRGGSFI--AGNLSFSRARVS-LEGSTPVSSRFKEPNF-TIPGIPGIVQHEILNN--RRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 378 ~~~~~~~~--~~~~~~s~~~~~-~~~~~~~~~~~~~~~~-~i~g~~~i~~~~~s~d--g~~l~t~s~dG~V~lWd 446 (764)
+..+.... .....+++.... ... .......... ...+...|.+++++++ +.+|++++.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRK---MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEE---CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEe---cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 87653221 111111111000 000 0000011111 1224567999999998 88999999999999995
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=317.69 Aligned_cols=278 Identities=19% Similarity=0.252 Sum_probs=247.5
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
+|.+.|++++| +|++++|++|+.||.|++||.. +.....+..|...|.+++|+|++ .|++++.|+.|++||
T Consensus 106 ~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 106 KTTNQVTCLAW-----SHDGNSIVTGVENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177 (425)
T ss_dssp --CBCEEEEEE-----CTTSSEEEEEETTSCEEEEETT---SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCceEEEEE-----cCCCCEEEEEeCCCeEEEEeCC---CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence 47889999999 7999999999999999999933 66788899999999999999997 899999999999999
Q ss_pred CCCCCeeeeeccccCCc---------------eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 112 CSSDGTCIRTLRQHSDY---------------VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~---------------V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
+ ..+..+..+..+... +.+++|+ ++ ..+++++.++.|++||+.+.
T Consensus 178 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~i~~~d~~~~----------------- 237 (425)
T 1r5m_A 178 V-ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGAIFVYQITEK----------------- 237 (425)
T ss_dssp T-TTTEEEEEECCC---------------CCCBSCCEEE-ET-TEEEEECGGGCEEEEETTCS-----------------
T ss_pred C-CCCcEEEEeeccccCccceeeccccCCcceeeEEEEc-CC-CEEEEEcCCCeEEEEEcCCC-----------------
Confidence 8 557778888777776 8999999 43 56889999999999999863
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR 256 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~ 256 (764)
.....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 238 -------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 286 (425)
T 1r5m_A 238 -------------------------------TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286 (425)
T ss_dssp -------------------------------SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC
T ss_pred -------------------------------ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec
Confidence 1223356788999999999999999999999999999999999999999
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe--
Q 046871 257 GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-- 334 (764)
Q Consensus 257 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-- 334 (764)
+|...|.+++|+|++ ++++++.|+.|++||+.+++++..+..|...|.+++|+|++++|++++.||.|++||+.++.
T Consensus 287 ~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~ 365 (425)
T 1r5m_A 287 GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSK 365 (425)
T ss_dssp CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-
T ss_pred CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccc
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999877
Q ss_pred ------------------EEEEeecC--C-CeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 335 ------------------SLLLCTGE--H-PILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 335 ------------------~~~~~~~~--~-~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
.+..+... . .|.+++|+|++ |++++.|+.|++|+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 66666643 3 99999999998 8899999999999986
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=325.58 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=245.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC--CCccceeecccccceeEEEEeCC-C-eEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD--VGSCSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~--~~~~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V 107 (764)
.+|...|++++| +|++++|++|+.||.|++||+.+. .......+.+|...|.+++|+|+ + +|++++.|+.|
T Consensus 64 ~~~~~~v~~~~~-----s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 64 LQVDSKFNDLDW-----SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp CCCSSCEEEEEE-----CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred EecCCceEEEEE-----CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 469999999999 799999999999999999999862 23467888999999999999997 5 89999999999
Q ss_pred EEecCCCCC------ee--eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 108 KTWNCSSDG------TC--IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 108 ~vWd~~~~~------~~--~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
++||+.... .. ...+..|...|.+++|+|.++.+|++++.|+.|++||++++.......
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------------- 205 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS------------- 205 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-------------
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-------------
Confidence 999985433 11 223467999999999995448999999999999999998642111000
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCC---eEEEEeCCCC-ceeEE
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEK---VVRVWDPRTG-SKTIK 254 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg---~I~iwd~~~~-~~~~~ 254 (764)
......+|...|.+++|+|++ .++++++.|+ .|++||++++ +.+..
T Consensus 206 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 206 -----------------------------YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp -----------------------------CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred -----------------------------ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 000012347889999999987 6899999998 9999999987 66777
Q ss_pred ec-cCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCC-CEEEEecCCCcEEEEeCC
Q 046871 255 LR-GHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTF-SHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 255 l~-~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~-~~l~sgs~Dg~I~iwd~~ 331 (764)
+. +|...|.+++|+| ++++|++++.|++|++||+++++++.++..|...|++++|+|++ .+|++++.||.|++||+.
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 87 8999999999999 99999999999999999999999999999999999999999999 899999999999999998
Q ss_pred CCeEEEEe---------------e---------------------cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 332 TRESLLLC---------------T---------------------GEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 332 ~~~~~~~~---------------~---------------------~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
++...... . +..++.+++|+|++ +++++.|+.|++|++.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 337 NLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 76532211 0 34567899999999 777888999999998764
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-36 Score=326.29 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=231.6
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd 111 (764)
.|.++|+|++| +|++++|++|+.||.|++||+.++..+....+.+|...|.+++|+|++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~-----s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAF-----NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEE-----CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEE-----CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 36679999999 899999999999999999999874336788899999999999999997 899999999999999
Q ss_pred CCCCC--eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 112 CSSDG--TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 112 ~~~~~--~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
+.... .....+..|...|.+++|+ +++++|++++.|+.|++||+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~--------------------------- 135 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDW--------------------------- 135 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----C---------------------------
T ss_pred cCCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccc---------------------------
Confidence 84422 2566778899999999999 68999999999999999999864210
Q ss_pred eecCCCCcccccccCCCCccceeccC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC------------------CCc
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKG-HKESVYALAMNDSGNLLVSGGTEKVVRVWDPR------------------TGS 250 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~------------------~~~ 250 (764)
.....+.. |...|++++|+|++++|++|+.|+.|++||++ .++
T Consensus 136 ------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3dwl_C 136 ------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT 197 (377)
T ss_dssp ------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred ------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhh
Confidence 01123444 89999999999999999999999999999985 345
Q ss_pred eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee----eEEEeeecCceEEEEEcCCCCEEEEecCCCcEE
Q 046871 251 KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC----IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 251 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~----~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
.+..+ +|...|.+++|+|++++|++++.|++|++||+.++++ +..+..|...|.+++|+|++++|++++.++.+
T Consensus 198 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~- 275 (377)
T 3dwl_C 198 VCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI- 275 (377)
T ss_dssp EEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-
T ss_pred hhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-
Confidence 56666 8999999999999999999999999999999999887 88899999999999999999999999866666
Q ss_pred EEeCCCCe--------------------------E-E---------EE-----------------eecCCCeEEEEeeCC
Q 046871 327 LTDLATRE--------------------------S-L---------LL-----------------CTGEHPILQLALHDD 353 (764)
Q Consensus 327 iwd~~~~~--------------------------~-~---------~~-----------------~~~~~~V~~l~~spd 353 (764)
+|+..... . . .. ..|...|+++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~ 355 (377)
T 3dwl_C 276 LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG 355 (377)
T ss_dssp EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEE
T ss_pred EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCC
Confidence 66654211 0 0 00 016778999997665
Q ss_pred c------eEEEeCCCcEEEeeC
Q 046871 354 N------IWVATTDSSVHRWPA 369 (764)
Q Consensus 354 ~------l~~~s~dg~I~iwd~ 369 (764)
. +++++.||.|++||+
T Consensus 356 ~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 356 TPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ETTEEEEEEEEETTSEEEEECC
T ss_pred CCCceEEEEeecCCCcEEEecC
Confidence 4 899999999999985
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-34 Score=297.88 Aligned_cols=291 Identities=21% Similarity=0.286 Sum_probs=252.3
Q ss_pred CccceeecccccceeEEEEeCC-CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 74 GSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.+....+.+|.+.|++++| ++ ++|++++.||.|++||+ ..+.....+..|...|.+++|+ +++.++++++.|+.|+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYD-SEKELLLFGGKDTMIN 84 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEE-TTTTEEEEEETTSCEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEEC-CCCCEEEEecCCCeEE
Confidence 4667889999999999999 55 59999999999999998 5677888888999999999999 7899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+|++..... ......+..|...|.+++| +++++
T Consensus 85 ~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~i~~~~~--~~~~l 117 (313)
T 3odt_A 85 GVPLFATSG---------------------------------------------EDPLYTLIGHQGNVCSLSF--QDGVV 117 (313)
T ss_dssp EEETTCCTT---------------------------------------------SCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred EEEeeecCC---------------------------------------------CCcccchhhcccCEEEEEe--cCCEE
Confidence 999976311 1122346778999999999 47899
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeeEEEee-ecCceEEEEEc
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSMIRLWDLGQQRCIHSYAV-HTDSVWALAST 310 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~-h~~~V~~l~~s 310 (764)
++++.|+.|++|| .++.+..+..|...+.++.|.| +++++++++.|+.|++|| ..+....+.. |...|.+++|+
T Consensus 118 ~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~ 193 (313)
T 3odt_A 118 ISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV 193 (313)
T ss_dssp EEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE
T ss_pred EEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEc
Confidence 9999999999999 6788888999999999999988 999999999999999999 5677777877 89999999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceecc
Q 046871 311 PTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGN 388 (764)
Q Consensus 311 pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 388 (764)
|++. +++++.||.|++||+++++.+..+. +..+|.+++|+|++ +++++.|+.|++||+.++++...+..+
T Consensus 194 ~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------- 265 (313)
T 3odt_A 194 DDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLP------- 265 (313)
T ss_dssp ETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECS-------
T ss_pred CCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEecc-------
Confidence 9988 9999999999999999999888776 67899999999998 999999999999999988766655432
Q ss_pred ccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 389 LSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 389 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
...+..++|++|++ +++++.||.|++||+.+++.+...
T Consensus 266 -----------------------------~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 266 -----------------------------AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp -----------------------------SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred -----------------------------CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 22477889999998 667999999999999998876554
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=324.60 Aligned_cols=282 Identities=16% Similarity=0.248 Sum_probs=231.9
Q ss_pred CCCCCCeeEEEeecccccC-CCcEEEEEeCCCcEEEEeCCC---CC-CccceeecccccceeEEEEeCCC-eEEEEeCCC
Q 046871 32 TKHCAGINCLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLAD---DV-GSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT 105 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~---~~-~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg 105 (764)
.+|.+.|+|++| +| ++++|++|+.||+|++||+.+ +. ......+ .|...|.+++|++++ .|++++.|+
T Consensus 60 ~~h~~~V~~~~~-----s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 60 ENEPNSITSSAV-----SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp TTTTSCEEEEEE-----ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCCceEEEEE-----CCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 389999999999 78 999999999999999999865 32 1123333 599999999999986 899999999
Q ss_pred cEEEecCC--CCCeeeeeccc------------cCCceEEEEEec-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCc
Q 046871 106 TLKTWNCS--SDGTCIRTLRQ------------HSDYVTCLAAAE-KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAME 170 (764)
Q Consensus 106 ~V~vWd~~--~~~~~~~~l~~------------h~~~V~~l~~~p-~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~ 170 (764)
+|++||+. ..++....+.. +...+.++.+.. +++.+|++++.|+.|++||++++.
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------- 203 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE---------- 203 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC----------
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe----------
Confidence 99999973 12333333222 455666666321 678999999999999999998631
Q ss_pred CCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 046871 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG--HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT 248 (764)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~ 248 (764)
....+.. |...|++++|+|++++|++|+.||.|++||+++
T Consensus 204 --------------------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 204 --------------------------------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp --------------------------------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred --------------------------------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 2233444 788999999999999999999999999999999
Q ss_pred CceeEEec-cCCcCeEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCeeeEEEee------------------------
Q 046871 249 GSKTIKLR-GHTDNIRSLLLD----STGRYCLSGSSDSMIRLWDLGQQRCIHSYAV------------------------ 299 (764)
Q Consensus 249 ~~~~~~l~-~h~~~V~~l~~s----pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~------------------------ 299 (764)
++.+..+. .|...|.+++|+ +++.+|++|+.||+|++||+++++++..+..
T Consensus 246 ~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 246 NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 99998886 788899999665 4678999999999999999999999888874
Q ss_pred --ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-------------------------------------
Q 046871 300 --HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT------------------------------------- 340 (764)
Q Consensus 300 --h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~------------------------------------- 340 (764)
|...|++++|+ ++++|++|+.||.|++||+.+++....+.
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 44568889999 77899999999999999999887655443
Q ss_pred -cCCCeEEEEeeCC--c--eEEEeCCCcEEEee
Q 046871 341 -GEHPILQLALHDD--N--IWVATTDSSVHRWP 368 (764)
Q Consensus 341 -~~~~V~~l~~spd--~--l~~~s~dg~I~iwd 368 (764)
|...|++++|+++ + |++|+.||.|++|+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6778999999988 4 99999999999995
No 71
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-34 Score=313.03 Aligned_cols=285 Identities=20% Similarity=0.278 Sum_probs=239.5
Q ss_pred CCCCCe--eEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc-cccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 33 KHCAGI--NCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES-HVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V--~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~-h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
+|...+ +++++ + +..+++++.||.|++||+.+ +.....+.. |...|.+++|+|++ +|++++.||.|+
T Consensus 89 ~~~~~~~~~~~~~-----s--~~~l~~~~~d~~v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 89 GIIDDYYLNLLDW-----S--NLNVVAVALERNVYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp TCCCCTTCBCEEE-----C--TTSEEEEEETTEEEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCcCCceEEEEee-----c--CCCEEEEECCCeEEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 666554 44555 3 45688888999999999998 445555554 89999999999997 899999999999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+||+ ..++.+..+.+|...|.+++|. ++++++++.|+.|++||++..
T Consensus 160 iwd~-~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~----------------------------- 206 (401)
T 4aez_A 160 IYDV-ESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIA----------------------------- 206 (401)
T ss_dssp EEET-TTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS-----------------------------
T ss_pred EEEC-cCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccC-----------------------------
Confidence 9997 5577888899999999999996 579999999999999999742
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLD 268 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 268 (764)
......+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+
T Consensus 207 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 207 ------------------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268 (401)
T ss_dssp ------------------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred ------------------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence 12234467899999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-EEEEEe--CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEE--ecCCCcEEEEeCCCCeEEEEe---e
Q 046871 269 STGR-YCLSGS--SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYS--GGRDLSLYLTDLATRESLLLC---T 340 (764)
Q Consensus 269 pdg~-~l~sgs--~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~s--gs~Dg~I~iwd~~~~~~~~~~---~ 340 (764)
|++. ++++++ .|+.|++||+.+++++..+. |...|.+++|+|+++++++ |+.||.|++||+.++...... .
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 9775 555654 79999999999999999886 6778999999999999998 558999999999987655443 3
Q ss_pred cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceee
Q 046871 341 GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 341 ~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~ 378 (764)
+...|.+++|+|++ +++++.|+.|++|++.+++.....
T Consensus 348 h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 67899999999999 889999999999999988766543
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.8e-34 Score=309.06 Aligned_cols=320 Identities=12% Similarity=0.135 Sum_probs=246.6
Q ss_pred ecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCe--eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 046871 80 FESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGT--CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 80 l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~--~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl 156 (764)
+..|...|.+++|+|++ +|++++.|+.|++||+ ..++ .+..+.+|...|.+++|+ +++++|++++.|+.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEE-ETTEEEEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCcEEeeeeecCCCCcccEEEEe-CCCCEEEEEcCCCeEEEEEC
Confidence 45589999999999997 8889999999999997 4455 788888999999999999 68999999999999999999
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG 236 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs 236 (764)
.++.. ........|...|.+++|+|++++|++++
T Consensus 82 ~~~~~----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 115 (372)
T 1k8k_C 82 KGRTW----------------------------------------------KPTLVILRINRAARCVRWAPNEKKFAVGS 115 (372)
T ss_dssp ETTEE----------------------------------------------EEEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCee----------------------------------------------eeeEEeecCCCceeEEEECCCCCEEEEEe
Confidence 75310 11122456888999999999999999999
Q ss_pred CCCeEEEEeCCCCce----eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC------------------CCCeee
Q 046871 237 TEKVVRVWDPRTGSK----TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL------------------GQQRCI 294 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl------------------~~~~~~ 294 (764)
.|+.|++||++.++. .....+|...|.+++|+|++++|++++.||.|++||+ ..++++
T Consensus 116 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (372)
T 1k8k_C 116 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM 195 (372)
T ss_dssp TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhhe
Confidence 999999999988763 2334678999999999999999999999999999995 467889
Q ss_pred EEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCC-
Q 046871 295 HSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVATTDSSVHRWPAEG- 371 (764)
Q Consensus 295 ~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~- 371 (764)
..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +..+|.+++|+|++ +++++.|+.|++|++..
T Consensus 196 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~ 275 (372)
T 1k8k_C 196 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 275 (372)
T ss_dssp EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETT
T ss_pred EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCc
Confidence 9999999999999999999999999999999999999998887776 46689999999999 66666999999999987
Q ss_pred -CC--CceeeecCCcceecc----ccccccccccCCCCCcccCCCCC-Ccc-ccCCCCceEeEEe-cCC---cEEEEeeC
Q 046871 372 -RN--PQKVFQRGGSFIAGN----LSFSRARVSLEGSTPVSSRFKEP-NFT-IPGIPGIVQHEIL-NNR---RHVLTKDA 438 (764)
Q Consensus 372 -~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~-~~~-i~g~~~i~~~~~s-~dg---~~l~t~s~ 438 (764)
++ ....+..+....... -.|.. ....+... -...+ ... ..+...|..++|+ ++| ++|+|++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 276 AGKLSFGGRLDVPKQSSQRGLTARERFQN--LDKKASSE---GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 350 (372)
T ss_dssp TTEEEECCCCCCC--------CHHHHHHH--CCCCC------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred CceEEEeeccCccccchhhhcchhhhhhh--cccccccc---cCccccccccccccCCcceeEEecCCCcceeeEEEecC
Confidence 42 111111110000000 00000 00000000 00000 111 1334568888866 677 99999999
Q ss_pred CCcEEEEEccccEE
Q 046871 439 AGSVKLWEITRGVV 452 (764)
Q Consensus 439 dG~V~lWdi~tg~~ 452 (764)
||.|++||+.+++.
T Consensus 351 Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 351 DGGMSIWDVRSLES 364 (372)
T ss_dssp TSEEEEEEHHHHHH
T ss_pred CCceEEEEecChhH
Confidence 99999999987653
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.7e-35 Score=322.27 Aligned_cols=295 Identities=14% Similarity=0.127 Sum_probs=226.1
Q ss_pred cceeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 76 CSATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 76 ~~~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.......|...|++++|+|. + .|++|+.||+|+|||+.... .....+.+|.+.|.+++|+|.++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34556778999999999985 3 89999999999999985432 345567789999999999976899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||+++.... .......+...+.+++|+|++++|
T Consensus 191 iwd~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l 224 (435)
T 4e54_B 191 LQDFKGNILR----------------------------------------------VFASSDTINIWFCSLDVSASSRMV 224 (435)
T ss_dssp EEETTSCEEE----------------------------------------------EEECCSSCSCCCCCEEEETTTTEE
T ss_pred EeeccCCcee----------------------------------------------EEeccCCCCccEEEEEECCCCCEE
Confidence 9999753100 001122334567889999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeeEE---EeeecCceEEEE
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQQRCIHS---YAVHTDSVWALA 308 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~~~~~~~---l~~h~~~V~~l~ 308 (764)
++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|++|++||+++.+.... ..+|...|++++
T Consensus 225 ~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 225 VTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303 (435)
T ss_dssp EEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC
T ss_pred EEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccccee
Confidence 999999999999986 567778899999999999999886 688999999999999988765443 357999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cC------CCeEEEEeeCCc--eEEEe------------CCCcEEEe
Q 046871 309 STPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GE------HPILQLALHDDN--IWVAT------------TDSSVHRW 367 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~------~~V~~l~~spd~--l~~~s------------~dg~I~iw 367 (764)
|+|++.+|++++.||.|++||+.++.....+. +. ..+....|+|++ ++++. .++.|++|
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF 383 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred ECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence 99999999999999999999999887655433 11 123344566655 33332 34579999
Q ss_pred eCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEe-EEecCCcEEEEeeCCCcEEEEE
Q 046871 368 PAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQH-EILNNRRHVLTKDAAGSVKLWE 446 (764)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~-~~s~dg~~l~t~s~dG~V~lWd 446 (764)
|..+++....+..++ ...|.++ +|+|||++|++|+ |+.|+|||
T Consensus 384 d~~~g~~~~~l~~~~-----------------------------------~~~v~s~~~fspdg~~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 384 DGNSGKMMCQLYDPE-----------------------------------SSGISSLNEFNPMGDTLASAM-GYHILIWS 427 (435)
T ss_dssp CSSSCCEEEEECCSS-----------------------------------CCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred ECCCCcEEEEEeCCC-----------------------------------CCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence 988877655543221 2234444 6899999999876 88999999
Q ss_pred ccccEEe
Q 046871 447 ITRGVVV 453 (764)
Q Consensus 447 i~tg~~i 453 (764)
+.+|+..
T Consensus 428 ~~~gk~r 434 (435)
T 4e54_B 428 QQEARTR 434 (435)
T ss_dssp CC-----
T ss_pred CCcCeee
Confidence 9998764
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.2e-33 Score=310.42 Aligned_cols=289 Identities=20% Similarity=0.343 Sum_probs=249.1
Q ss_pred cceeecccccce-eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 76 CSATFESHVDWV-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 76 ~~~~l~~h~~~V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
....+.+|...| .++.+. +++|++|+.||+|++||+ .+++.+..+.+|.+.|.+++|+ +++ ++++|+.||.|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~-~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~-~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE-DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYA-HGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE-TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEC-STT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEEC-CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEc-CCC-EEEEEeCCCCEEEE
Confidence 456788998885 666664 359999999999999997 5688899999999999999999 444 99999999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc--CCCCEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN--DSGNLL 232 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s--p~g~~l 232 (764)
|++++ .....+.+|...|.+++|+ +++.++
T Consensus 189 d~~~~------------------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 189 DIKKG------------------------------------------------CCTHVFEGHNSTVRCLDIVEYKNIKYI 220 (464)
T ss_dssp ETTTT------------------------------------------------EEEEEECCCSSCEEEEEEEESSSCEEE
T ss_pred ECCCC------------------------------------------------cEEEEECCCCCccEEEEEecCCCCCEE
Confidence 99863 2334567899999999998 578899
Q ss_pred EEEeCCCeEEEEeCCCCce-----------------------eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 233 VSGGTEKVVRVWDPRTGSK-----------------------TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~-----------------------~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
++|+.|+.|++||+++++. +..+.+|...|.++ +++++++++|+.|+.|++||+.
T Consensus 221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETT
T ss_pred EEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999999987753 45677888888887 5679999999999999999999
Q ss_pred CCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCceEEEeCCCcEEEee
Q 046871 290 QQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDNIWVATTDSSVHRWP 368 (764)
Q Consensus 290 ~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~l~~~s~dg~I~iwd 368 (764)
+++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+. +...|.++++++..+++++.|+.|++||
T Consensus 299 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999888775 6788999999977799999999999999
Q ss_pred CCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 369 AEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
+.+........ ....+..++|++++++|++++ ||.|++||+.
T Consensus 379 ~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 379 ANDYSRKFSYH-------------------------------------HTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp TTTCCEEEEEE-------------------------------------CTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred CCCCceeeeec-------------------------------------CCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence 98765332221 122345678899999999999 9999999999
Q ss_pred ccEEeeec
Q 046871 449 RGVVVEDY 456 (764)
Q Consensus 449 tg~~i~~~ 456 (764)
+|++++.+
T Consensus 421 ~g~~~~~~ 428 (464)
T 3v7d_B 421 SGKLVHAN 428 (464)
T ss_dssp TCCEEESC
T ss_pred CCcEEehh
Confidence 99999875
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=305.16 Aligned_cols=310 Identities=16% Similarity=0.224 Sum_probs=238.3
Q ss_pred ceeecccccceeEEEEeCCC-eE-EEEeC---CCcEEEecCCCCCeee-eeccccCCceEEEEEecCC--CcEEEEEeCC
Q 046871 77 SATFESHVDWVNDAVLVGDN-TL-VSCSS---DTTLKTWNCSSDGTCI-RTLRQHSDYVTCLAAAEKN--SNIVASGGLG 148 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l-~s~s~---Dg~V~vWd~~~~~~~~-~~l~~h~~~V~~l~~~p~~--~~~lasg~~d 148 (764)
...+.+|...|.+++|+|++ .+ ++++. |+.|++||+.. ++.. ....+|...|.+++|+|.. +.+|++++.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 44567899999999999987 55 45555 89999999854 4433 3334799999999999432 6999999999
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEE----
Q 046871 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALA---- 224 (764)
Q Consensus 149 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~---- 224 (764)
+.|++||+.+.. .....+.+|...|.+++
T Consensus 90 g~i~iwd~~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~~~~ 122 (357)
T 3i2n_A 90 GNLHIWNLEAPE-----------------------------------------------MPVYSVKGHKEIINAIDGIGG 122 (357)
T ss_dssp SCEEEECTTSCS-----------------------------------------------SCSEEECCCSSCEEEEEEESG
T ss_pred CeEEEEeCCCCC-----------------------------------------------ccEEEEEecccceEEEeeccc
Confidence 999999998642 12234678999999995
Q ss_pred --EcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeccCCc----CeEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCee
Q 046871 225 --MNDSGNLLVSGGTEKVVRVWDPRTGS-KTIKLRGHTD----NIRSLL----LDSTGRYCLSGSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 225 --~sp~g~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~----~V~~l~----~spdg~~l~sgs~Dg~I~iwdl~~~~~ 293 (764)
|+|++++|++|+.||.|++||+++++ .+..+..|.+ .+.+++ |+|++++|++++.||.|++||++++++
T Consensus 123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence 57899999999999999999999987 6777776655 899998 788999999999999999999999887
Q ss_pred eEEEeeecCceEEEEEcC---CCCEEEEecCCCcEEEEeCCCCeEEEEe------ecCCCeEEEEeeCCc---eEEEeCC
Q 046871 294 IHSYAVHTDSVWALASTP---TFSHVYSGGRDLSLYLTDLATRESLLLC------TGEHPILQLALHDDN---IWVATTD 361 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~sp---d~~~l~sgs~Dg~I~iwd~~~~~~~~~~------~~~~~V~~l~~spd~---l~~~s~d 361 (764)
... ..|...|.+++|+| ++.+|++++.||.|++||+++++....+ .+...|.+++|+|++ +++++.|
T Consensus 203 ~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 203 RWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp EEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred eee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 554 56889999999999 9999999999999999999877654333 478899999999997 8889999
Q ss_pred CcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCcccc-CCCCceEeEEecCCcEEE-EeeCC
Q 046871 362 SSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIP-GIPGIVQHEILNNRRHVL-TKDAA 439 (764)
Q Consensus 362 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~-g~~~i~~~~~s~dg~~l~-t~s~d 439 (764)
+.|++||+..+.............. ..+. ......+. +...|..++|+|++++|+ +++.|
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~-----------~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMG-----------VAGS-------VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD 343 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCC-----------CCCE-------EEEEEEEECCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CcEEEeecCCCcccccccCCCCccc-----------cccc-------cceeeccccCCCCeeEEEEcCCCCeEEEEecCC
Confidence 9999999987654433221110000 0000 00111222 344689999999999998 89999
Q ss_pred CcEEEEEccccEEe
Q 046871 440 GSVKLWEITRGVVV 453 (764)
Q Consensus 440 G~V~lWdi~tg~~i 453 (764)
|.|++||+.+.++|
T Consensus 344 ~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 344 QTVRVLIVTKLNKI 357 (357)
T ss_dssp SEEEEEEECC----
T ss_pred CcEEEEECCCcccC
Confidence 99999999887653
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-35 Score=316.36 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=228.8
Q ss_pred eecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC--eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEe
Q 046871 79 TFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG--TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWD 155 (764)
Q Consensus 79 ~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~--~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwd 155 (764)
.+..|.+.|++++|+|++ +|++++.|+.|++||+. .+ .+...+.+|...|.+++|+ +++++|++++.|+.|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE-TTEEEECCCBCCCSSCEEEEEEC-TTTCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc-CCceEEEEEEecCCceEEEEEEe-CCCCEEEEEeCCCeEEEEE
Confidence 345567899999999997 88999999999999984 44 7788899999999999999 7789999999999999999
Q ss_pred CCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE
Q 046871 156 IEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG 235 (764)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 235 (764)
+.++.. ......+..|...|.+++|+|++++|++|
T Consensus 84 ~~~~~~---------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 118 (377)
T 3dwl_C 84 KRPDGT---------------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVG 118 (377)
T ss_dssp -----C---------------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCEEE
T ss_pred cCCCCc---------------------------------------------eeeeeEecccCCceEEEEECCCCCEEEEE
Confidence 986420 01123456789999999999999999999
Q ss_pred eCCCeEEEEeCCCCc---eeEEecc-CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC------------------CCee
Q 046871 236 GTEKVVRVWDPRTGS---KTIKLRG-HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG------------------QQRC 293 (764)
Q Consensus 236 s~dg~I~iwd~~~~~---~~~~l~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~------------------~~~~ 293 (764)
+.|+.|++||+++++ ....+.+ |...|.+++|+|++++|++++.|++|++||+. .+++
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 198 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV 198 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhh
Confidence 999999999999887 4777877 99999999999999999999999999999985 3567
Q ss_pred eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE----EEEe-ecCCCeEEEEeeCCc-eEEEeCCCcEEEe
Q 046871 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES----LLLC-TGEHPILQLALHDDN-IWVATTDSSVHRW 367 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~----~~~~-~~~~~V~~l~~spd~-l~~~s~dg~I~iw 367 (764)
+..+ .|...|.+++|+|++++|++++.||.|++||+.+++. +..+ .+..+|.+++|+|++ +++++.++.+.+|
T Consensus 199 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 199 CAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp EECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred hhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 7777 8999999999999999999999999999999998876 4444 367789999999999 4455556566677
Q ss_pred eCCCCC--CceeeecCCcce--------------eccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCC-
Q 046871 368 PAEGRN--PQKVFQRGGSFI--------------AGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNR- 430 (764)
Q Consensus 368 d~~~~~--~~~~~~~~~~~~--------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg- 430 (764)
+..... ....+....... ...+.|+............-...........+...|.++++.++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 776322 111111110000 001111110000000000000001111222355678888866543
Q ss_pred c---EEEEeeCCCcEEEEEc
Q 046871 431 R---HVLTKDAAGSVKLWEI 447 (764)
Q Consensus 431 ~---~l~t~s~dG~V~lWdi 447 (764)
. .|+|++.||.|++||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3 6999999999999985
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-34 Score=309.32 Aligned_cols=287 Identities=17% Similarity=0.203 Sum_probs=235.9
Q ss_pred eecccccceeEEEEeCC-----CeEEEEeCCCcEEEecCCCCCeeeeeccc-----cCCceEEEEEecCC---CcEEEEE
Q 046871 79 TFESHVDWVNDAVLVGD-----NTLVSCSSDTTLKTWNCSSDGTCIRTLRQ-----HSDYVTCLAAAEKN---SNIVASG 145 (764)
Q Consensus 79 ~l~~h~~~V~~v~~s~d-----~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~-----h~~~V~~l~~~p~~---~~~lasg 145 (764)
...+|...|.+++|+|+ ..+++++.++.|++||+. .+..+..+.. |...|.+++|+|.. +.+|++|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcC-CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 34589999999999983 367777778899999974 3555555543 55789999999432 5799999
Q ss_pred eCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEE
Q 046871 146 GLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM 225 (764)
Q Consensus 146 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~ 225 (764)
+.||.|++||+.++ .....+.+|...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~------------------------------------------------~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 92 GSRGIIRIINPITM------------------------------------------------QCIKHYVGHGNAINELKF 123 (366)
T ss_dssp ETTCEEEEECTTTC------------------------------------------------CEEEEEESCCSCEEEEEE
T ss_pred cCCCEEEEEEchhc------------------------------------------------eEeeeecCCCCcEEEEEE
Confidence 99999999999863 223446689999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEeCCCCceeEEe---ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe---
Q 046871 226 ND-SGNLLVSGGTEKVVRVWDPRTGSKTIKL---RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA--- 298 (764)
Q Consensus 226 sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~--- 298 (764)
+| ++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 203 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY 203 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE
Confidence 99 9999999999999999999999998888 7899999999999999999999999999999998876554443
Q ss_pred -------------------------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE--------------EEEe
Q 046871 299 -------------------------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES--------------LLLC 339 (764)
Q Consensus 299 -------------------------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~--------------~~~~ 339 (764)
.|...|.+++|+ +++|++++.||.|++||+.++.. +..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 281 (366)
T 3k26_A 204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 281 (366)
T ss_dssp TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE
T ss_pred EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc
Confidence 399999999998 67999999999999999987643 3333
Q ss_pred e-cCCCeEEEEeeCC--c--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCcc
Q 046871 340 T-GEHPILQLALHDD--N--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFT 414 (764)
Q Consensus 340 ~-~~~~V~~l~~spd--~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 414 (764)
. +...|.+++|+|+ + +++++.|+.|++||+.++++..... ..
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------------------~~ 328 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC---------------------------------TT 328 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE---------------------------------EE
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc---------------------------------eE
Confidence 3 5678999999999 7 8889999999999998876543111 01
Q ss_pred ccC---CCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 415 IPG---IPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 415 i~g---~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
+.+ ...|..++|++|+++|++++.||.|++||+.+
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 111 35688999999999999999999999999864
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.2e-33 Score=305.85 Aligned_cols=284 Identities=20% Similarity=0.346 Sum_probs=239.8
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~ 115 (764)
-.++|+| |++ ++||+|. |++|+|||+.+++......+.+|...|++++|+|++ +|++|+.|++|++||+ ..
T Consensus 107 y~~~l~w-----S~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~-~~ 178 (420)
T 4gga_A 107 YLNLVDW-----SSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQ 178 (420)
T ss_dssp TCBCEEE-----CTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET-TT
T ss_pred cceeEEE-----CCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc-CC
Confidence 4677888 654 6888775 899999999984433344456788899999999997 8999999999999997 56
Q ss_pred CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCC
Q 046871 116 GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195 (764)
Q Consensus 116 ~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (764)
++++..+.+|...+.++++. +.++++|+.|+.+++||....
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~------------------------------------ 219 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVA------------------------------------ 219 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS------------------------------------
T ss_pred CcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeeccc------------------------------------
Confidence 88999999999999999887 689999999999999998753
Q ss_pred CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeccCCcCeEEEEEcCCC
Q 046871 196 NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS----KTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg 271 (764)
......+.+|...+..+.++|+++++++++.|+.|++||..+++ .+.....|...|.+++|+|++
T Consensus 220 -----------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~ 288 (420)
T 4gga_A 220 -----------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288 (420)
T ss_dssp -----------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC
T ss_pred -----------ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc
Confidence 12234567899999999999999999999999999999998775 356677899999999999976
Q ss_pred C-EEEE--EeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec--CCCcEEEEeCCCCeEEEEee-cCCCe
Q 046871 272 R-YCLS--GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG--RDLSLYLTDLATRESLLLCT-GEHPI 345 (764)
Q Consensus 272 ~-~l~s--gs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~-~~~~V 345 (764)
. .+++ |+.|++|++||+.+++++..+..| ..+.++.|+|+++.+++++ .|+.|++||+.+++++..+. |..+|
T Consensus 289 ~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V 367 (420)
T 4gga_A 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 367 (420)
T ss_dssp TTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred ccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5 4444 457999999999999999988755 5788999999999988654 79999999999999988776 68899
Q ss_pred EEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 346 LQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 346 ~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
++++|+|++ |++|+.|++|++||+....+.+..+
T Consensus 368 ~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 368 LSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 999999999 9999999999999998776655544
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=305.31 Aligned_cols=292 Identities=18% Similarity=0.267 Sum_probs=234.6
Q ss_pred CCCCCCeeEEEeecccccC-CCcEEEEEeCCCcEEEEeCCCCCCccceee-----------cccccceeEEEEeC-CC-e
Q 046871 32 TKHCAGINCLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLADDVGSCSATF-----------ESHVDWVNDAVLVG-DN-T 97 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-----------~~h~~~V~~v~~s~-d~-~ 97 (764)
.+|.+.|+|++| +| ++++|++|+.||.|++||+.+......... .+|...|.+++|+| ++ .
T Consensus 40 ~~h~~~v~~~~~-----s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 40 RIHGGGINTLDI-----EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp CCCSSCEEEEEE-----CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred eccCCcEEEEEE-----ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 489999999999 78 999999999999999999998543322221 25999999999999 44 8
Q ss_pred EEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 98 LVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK--NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 98 l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~--~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
|++++.|+.|++||+ ..+.....+. +...+.++.+++. ++.++++++.|+.|++||+.++
T Consensus 115 l~s~~~d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---------------- 176 (408)
T 4a11_B 115 FTSSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---------------- 176 (408)
T ss_dssp EEEEETTSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------------
T ss_pred EEEEeCCCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------------
Confidence 999999999999998 4566666665 7788999999853 4559999999999999999863
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-eeE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGS-KTI 253 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~-~~~ 253 (764)
.....+..|...|.+++|+|++. +|++|+.||.|++||++++. .+.
T Consensus 177 --------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~ 224 (408)
T 4a11_B 177 --------------------------------SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224 (408)
T ss_dssp --------------------------------CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSE
T ss_pred --------------------------------ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccc
Confidence 12234667899999999999988 58999999999999998775 344
Q ss_pred Ee---------------ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec-----CceEEEEEcCCC
Q 046871 254 KL---------------RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT-----DSVWALASTPTF 313 (764)
Q Consensus 254 ~l---------------~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-----~~V~~l~~spd~ 313 (764)
.+ ..|...|.+++|+|++++|++++.||.|++||+.+++....+..+. ..+.........
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS 304 (408)
T ss_dssp ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS
T ss_pred cccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCC
Confidence 43 5788999999999999999999999999999999887765544321 122222223445
Q ss_pred CEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceee
Q 046871 314 SHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 314 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~ 378 (764)
..+++++.|+.|++||+.+++.+..+. +...|.+++|+|++ |++++.||.|++|++.+.++....
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred ceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 667777889999999999999888877 67899999999998 999999999999999988765443
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-34 Score=304.89 Aligned_cols=250 Identities=18% Similarity=0.195 Sum_probs=206.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V~ 108 (764)
.||.+.|++++| +|+|++||+|+.|++|+|||+.++...++..+.+|.+.|.+++|+++ + +|++|+.|++|+
T Consensus 10 ~~H~~~V~~v~~-----s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 10 TSHEDMIHDAQM-----DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp ----CCEEEEEE-----CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred ccccCeEEEeeE-----cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 489999999999 79999999999999999999987544467889999999999999853 4 899999999999
Q ss_pred EecCCCCC-eeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 109 TWNCSSDG-TCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 109 vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+||+.... .....+.+|...|.+++|+|. ++.+|++|+.|+.|++||+......
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~------------------------ 140 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW------------------------ 140 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE------------------------
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc------------------------
Confidence 99984321 456678899999999999953 2789999999999999999753100
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-----------------CCEEEEEeCCCeEEEEeCCCC
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-----------------GNLLVSGGTEKVVRVWDPRTG 249 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-----------------g~~l~sgs~dg~I~iwd~~~~ 249 (764)
.....+.+|...|.+++|+|+ +++|++|+.|+.|++||++..
T Consensus 141 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 141 ---------------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp ---------------------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred ---------------------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 001224567777888888876 478999999999999999765
Q ss_pred ---ceeEEeccCCcCeEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC---e-eeEEEeeecCceEEEEEcCCCCEEEE
Q 046871 250 ---SKTIKLRGHTDNIRSLLLDSTG----RYCLSGSSDSMIRLWDLGQQ---R-CIHSYAVHTDSVWALASTPTFSHVYS 318 (764)
Q Consensus 250 ---~~~~~l~~h~~~V~~l~~spdg----~~l~sgs~Dg~I~iwdl~~~---~-~~~~l~~h~~~V~~l~~spd~~~l~s 318 (764)
+.+..+.+|.+.|++++|+|++ ++|++++.|++|++||+.+. + ....+..|.+.|++++|+|++++|++
T Consensus 200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV 279 (316)
T ss_dssp SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence 4667789999999999999986 88999999999999998762 1 23456778999999999999999999
Q ss_pred ecCCCcEEEEeCC
Q 046871 319 GGRDLSLYLTDLA 331 (764)
Q Consensus 319 gs~Dg~I~iwd~~ 331 (764)
++.|+.|++|+..
T Consensus 280 ~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 280 SGGDNKVTLWKES 292 (316)
T ss_dssp EESSSCEEEEEEC
T ss_pred EcCCCeEEEEEEC
Confidence 9999999999976
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-33 Score=310.92 Aligned_cols=279 Identities=22% Similarity=0.404 Sum_probs=240.7
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEec
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWN 111 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd 111 (764)
.+|..+|.|+++ ++++|++|+.||.|++||+.+ ++....+.+|...|.+++| .++.|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~-------d~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 130 SETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp CSSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEE
T ss_pred cCCCCcEEEEEE-------CCCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEE
Confidence 468889999987 689999999999999999988 6788899999999999999 335899999999999999
Q ss_pred CCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 112 CSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 112 ~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+ ..++++..+.+|...|.+++|+ ++++++|+.||.|++||+.+....
T Consensus 200 ~-~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~----------------------------- 246 (435)
T 1p22_A 200 V-NTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDI----------------------------- 246 (435)
T ss_dssp S-SSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCC-----------------------------
T ss_pred C-CCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCc-----------------------------
Confidence 8 5578888999999999999997 469999999999999999864211
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
.......+|...|.++++ +++++++|+.||.|++||+++++.+..+.+|...|.++.++ +
T Consensus 247 ----------------~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~ 306 (435)
T 1p22_A 247 ----------------TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--D 306 (435)
T ss_dssp ----------------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--T
T ss_pred ----------------eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--C
Confidence 111346788999999999 58899999999999999999999999999999999999995 7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe---------EEEEe-ec
Q 046871 272 RYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE---------SLLLC-TG 341 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~---------~~~~~-~~ 341 (764)
+++++|+.||+|++||+++++++.++.+|...|.+++| ++.+|++|+.||.|++||+.++. .+..+ .|
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h 384 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence 89999999999999999999999999999999999999 78899999999999999997654 45444 46
Q ss_pred CCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCc
Q 046871 342 EHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 342 ~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~ 375 (764)
..+|.+++|++..+++++.||.|++||+.+....
T Consensus 385 ~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 385 SGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SSCCCCEEECSSCEEECCSSSEEEEEC-------
T ss_pred CCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 7899999995555999999999999999876544
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.9e-33 Score=293.31 Aligned_cols=249 Identities=20% Similarity=0.256 Sum_probs=212.1
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC-CCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEE
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS-DGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFI 153 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~-~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~i 153 (764)
+..+.+|.+.|++++|++++ +|++|+.|++|+|||+.. ..+++.++.+|.+.|.+++|+++ ++++|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 35678999999999999997 899999999999999853 24677889999999999999843 4889999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--CCE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--GNL 231 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g~~ 231 (764)
||++++.. .....+..|...|.+++|+|+ +.+
T Consensus 82 Wd~~~~~~----------------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~ 115 (297)
T 2pm7_B 82 WKEENGRW----------------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPM 115 (297)
T ss_dssp EEBSSSCB----------------------------------------------CCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred EEcCCCce----------------------------------------------EEEEEeecCCCceeEEEeCcCCCCcE
Confidence 99975310 112335678899999999997 899
Q ss_pred EEEEeCCCeEEEEeCCCCc--eeEEeccCCcCeEEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCe----
Q 046871 232 LVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSLLLDST-------------GRYCLSGSSDSMIRLWDLGQQR---- 292 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~spd-------------g~~l~sgs~Dg~I~iwdl~~~~---- 292 (764)
|++|+.|+.|++||++++. ....+.+|...|.+++|+|+ +++|++|+.|++|++||+++++
T Consensus 116 l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~ 195 (297)
T 2pm7_B 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (297)
T ss_dssp EEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred EEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE
Confidence 9999999999999998763 24667889999999999997 5799999999999999998765
Q ss_pred eeEEEeeecCceEEEEEcCCC---CEEEEecCCCcEEEEeCCCCe---EEEEe---ecCCCeEEEEeeCCc--eEEEeCC
Q 046871 293 CIHSYAVHTDSVWALASTPTF---SHVYSGGRDLSLYLTDLATRE---SLLLC---TGEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 293 ~~~~l~~h~~~V~~l~~spd~---~~l~sgs~Dg~I~iwd~~~~~---~~~~~---~~~~~V~~l~~spd~--l~~~s~d 361 (764)
+..++.+|.+.|.+++|+|++ .+|++++.|++|++||+++.. ....+ .+...|.+++|+|++ |++++.|
T Consensus 196 ~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 677889999999999999985 899999999999999998643 12222 356789999999999 8899999
Q ss_pred CcEEEeeCCC
Q 046871 362 SSVHRWPAEG 371 (764)
Q Consensus 362 g~I~iwd~~~ 371 (764)
+.|++|+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999763
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=310.18 Aligned_cols=308 Identities=16% Similarity=0.194 Sum_probs=245.9
Q ss_pred CCcEEEEeCCCCCCccceeecccccceeEEEEeC-CC-eEEEEeCCCcEEEecCCCCCeeeeec-------------ccc
Q 046871 61 DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVG-DN-TLVSCSSDTTLKTWNCSSDGTCIRTL-------------RQH 125 (764)
Q Consensus 61 Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~-d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l-------------~~h 125 (764)
++.+++|+++. ......+.+|.+.|++++|+| ++ +|++++.||.|++||+.. +.....+ .+|
T Consensus 22 ~~~~~v~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 22 ESTRRVLGLEL--NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHTEEE--CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCC
T ss_pred cCcceeecccc--CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccC
Confidence 45678888876 556778889999999999999 76 899999999999999844 3333322 259
Q ss_pred CCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCC
Q 046871 126 SDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQS 205 (764)
Q Consensus 126 ~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 205 (764)
...|.+++|+|.++.+|++++.|+.|++||+.++.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------------------------------- 133 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--------------------------------------------- 133 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE---------------------------------------------
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc---------------------------------------------
Confidence 99999999996588899999999999999998631
Q ss_pred CCccceeccCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCC
Q 046871 206 QGYVPIAAKGHKESVYALAMND---SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDS 281 (764)
Q Consensus 206 ~~~~~~~~~~~~~~V~~l~~sp---~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg 281 (764)
... ...+...+.++++++ ++.++++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ .|++++.||
T Consensus 134 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 134 ---TAD-VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp ---EEE-EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred ---cce-eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 111 223567789999988 445999999999999999999999999999999999999999998 588999999
Q ss_pred cEEEEeCCCCe-eeEEE---------------eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec----
Q 046871 282 MIRLWDLGQQR-CIHSY---------------AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG---- 341 (764)
Q Consensus 282 ~I~iwdl~~~~-~~~~l---------------~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---- 341 (764)
.|++||++++. ++..+ ..|...|.+++|+|++++|++++.||.|++||+.+++.......
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 289 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN 289 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc
Confidence 99999998765 45554 57889999999999999999999999999999998876544331
Q ss_pred --CCC-eEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccC
Q 046871 342 --EHP-ILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPG 417 (764)
Q Consensus 342 --~~~-V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g 417 (764)
... .......... +++++.++.|++||+.++++...+..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------------------------------------ 333 (408)
T 4a11_B 290 NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH------------------------------------ 333 (408)
T ss_dssp CCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC------------------------------------
T ss_pred cccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC------------------------------------
Confidence 111 2222223333 888899999999999988766655432
Q ss_pred CCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 418 IPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 418 ~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
...|..++|+||+++|++++.||.|++||+.+++.+...
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 234778899999999999999999999999999888655
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=313.66 Aligned_cols=290 Identities=18% Similarity=0.265 Sum_probs=233.9
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC---------Cccceeecccc------------cceeEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV---------GSCSATFESHV------------DWVNDA 90 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~---------~~~~~~l~~h~------------~~V~~v 90 (764)
..|.+.|+|++| +|++++||+|+.||.|+|||+.+.. .+....+.+|. ..|+++
T Consensus 25 ~~~~~~V~~v~~-----s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 25 VAEADIISTVEF-----NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CCGGGSEEEEEE-----CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccccCcEEEEEE-----CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 568899999999 8999999999999999999998732 12477888998 889999
Q ss_pred EEeCCC---eEEEEeCCCcEEEecCCCCCee---------------------------------------e-eeccccCC
Q 046871 91 VLVGDN---TLVSCSSDTTLKTWNCSSDGTC---------------------------------------I-RTLRQHSD 127 (764)
Q Consensus 91 ~~s~d~---~l~s~s~Dg~V~vWd~~~~~~~---------------------------------------~-~~l~~h~~ 127 (764)
+|+|++ .|++++.|++|++||+.. +.. . ....+|..
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 999984 799999999999999733 211 1 11467999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 128 YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
.|.+++|+ +++++|++| .|+.|++||++...... ....
T Consensus 179 ~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~-----------------------------------~~~~----- 216 (447)
T 3dw8_B 179 HINSISIN-SDYETYLSA-DDLRINLWHLEITDRSF-----------------------------------NIVD----- 216 (447)
T ss_dssp CCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEE-----------------------------------EEEE-----
T ss_pred ceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCcee-----------------------------------eeee-----
Confidence 99999999 689999998 79999999998421000 0000
Q ss_pred ccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce----eEEeccCCc------------CeEEEEEcCC
Q 046871 208 YVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSK----TIKLRGHTD------------NIRSLLLDST 270 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~------------~V~~l~~spd 270 (764)
.....+.+|...|++++|+|++ ++|++|+.||.|++||+++++. +..+.+|.. .|.+++|+|+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 217 IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred cccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence 0011356789999999999998 9999999999999999999887 788888876 8999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCC-CeeeEEEeeecCc---------------eEEEEEcCCCCEEEEecCCCcEEEEeCCCCe
Q 046871 271 GRYCLSGSSDSMIRLWDLGQ-QRCIHSYAVHTDS---------------VWALASTPTFSHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 271 g~~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h~~~---------------V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
|++|++++. +.|++||+++ ++++.++..|... +..++|+|++++|++|+.||.|++||+.+++
T Consensus 297 g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 297 GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred CCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 999999998 9999999997 8899999988642 2349999999999999999999999999988
Q ss_pred EEEEee---------------------------------cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCC
Q 046871 335 SLLLCT---------------------------------GEHPILQLALHDDN-IWVATTDSSVHRWPAE 370 (764)
Q Consensus 335 ~~~~~~---------------------------------~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~ 370 (764)
.+.... ....|..++|+|++ +++.+..+.+++|..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 376 DITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred ceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 765322 23468899999999 4444445568888754
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-33 Score=304.40 Aligned_cols=290 Identities=20% Similarity=0.261 Sum_probs=237.8
Q ss_pred ecccccc--eeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccc-cCCceEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 046871 80 FESHVDW--VNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQ-HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 156 (764)
Q Consensus 80 l~~h~~~--V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~-h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl 156 (764)
..+|... +.++.|+++ .+++++.|+.|++||+ ..+.....+.. |...|.+++|+ +++.+|++|+.||.|++||+
T Consensus 87 ~~~~~~~~~~~~~~~s~~-~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNL-NVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWS-HDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CTTCCCCTTCBCEEECTT-SEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTSCEEEEET
T ss_pred CCCCcCCceEEEEeecCC-CEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEEC-CCCCEEEEECCCCeEEEEEC
Confidence 3455544 555777764 5788889999999998 44666555544 88999999999 68999999999999999999
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG 236 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs 236 (764)
.++ .....+.+|...|.+++|+ +++|++|+
T Consensus 164 ~~~------------------------------------------------~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 193 (401)
T 4aez_A 164 ESQ------------------------------------------------TKLRTMAGHQARVGCLSWN--RHVLSSGS 193 (401)
T ss_dssp TTC------------------------------------------------CEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred cCC------------------------------------------------eEEEEecCCCCceEEEEEC--CCEEEEEc
Confidence 763 2234466899999999995 67999999
Q ss_pred CCCeEEEEeCC-CCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC-
Q 046871 237 TEKVVRVWDPR-TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS- 314 (764)
Q Consensus 237 ~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~- 314 (764)
.||.|++||++ ....+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++.
T Consensus 194 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT
T ss_pred CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC
Confidence 99999999999 5667888999999999999999999999999999999999999999999999999999999999765
Q ss_pred EEEEec--CCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe--CCCcEEEeeCCCCCCceeeecCCcceecc
Q 046871 315 HVYSGG--RDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT--TDSSVHRWPAEGRNPQKVFQRGGSFIAGN 388 (764)
Q Consensus 315 ~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 388 (764)
++++++ .|+.|++||+.+++.+..+.+...|.+++|+|++ +++++ .|+.|++|++.++........
T Consensus 274 ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-------- 345 (401)
T 4aez_A 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-------- 345 (401)
T ss_dssp EEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--------
T ss_pred EEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--------
Confidence 555654 7999999999999999999999999999999999 66643 799999999987543332210
Q ss_pred ccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 389 LSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 389 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
..+...|..++|+||+++|++++.||.|++||+.+++.++..
T Consensus 346 --------------------------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 346 --------------------------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp --------------------------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred --------------------------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 012345778999999999999999999999999999988765
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-34 Score=312.27 Aligned_cols=309 Identities=10% Similarity=-0.011 Sum_probs=243.5
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCC
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~ 113 (764)
-..+|.+++| ||||+++||++.|++|+ |... ...+.+|...|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~-----SpDG~~iASas~D~TV~--d~~~-----~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~- 74 (588)
T 2j04_A 14 FEDWKNNLTW-----ARDGTLYLTTFPDISIG--QPKY-----AKDINCNSKNLFHVKEFPLE------FENKLDFELA- 74 (588)
T ss_dssp CSSSSCCEEE-----CTTSCEEEECSSSEEEE--EECC-----CSCCSSBGGGTEEEEEECCC------CCCTTTTSCC-
T ss_pred hhccEEEEEE-----CCCCCEEEEEcCCceee--cccc-----cceecCCCccEEEEEECCCC------CcceEEEEeC-
Confidence 4578999999 89999999999999999 6444 34558999999999999998 5666666663
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
.+.....+ .|..+|.+++|+ +++.+||+++.||.|++||...
T Consensus 75 -~~~~~~~~-~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~----------------------------------- 116 (588)
T 2j04_A 75 -QQNGLLNS-QPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK----------------------------------- 116 (588)
T ss_dssp -CSSCSSTT-SCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE-----------------------------------
T ss_pred -CCceEeec-CCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc-----------------------------------
Confidence 22233333 458899999999 7999999999999999999542
Q ss_pred CCCcccccccCCCCccceeccCCC-----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEe----cc
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHK-----ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK-------TIKL----RG 257 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~-----~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~-------~~~l----~~ 257 (764)
....+. |. ..|.+++|+|+|++|++|+.||.|++||+.++.. +..+ .+
T Consensus 117 ---------------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g 180 (588)
T 2j04_A 117 ---------------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG 180 (588)
T ss_dssp ---------------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT
T ss_pred ---------------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc
Confidence 111122 33 3599999999999999999999999999998853 5665 67
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee---eEEEe-eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC---IHSYA-VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 258 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~---~~~l~-~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
|.+.|.+++|+||| +++++.|++|++||+..+.. .+++. +|...|.+++|+ ++.|++++ ++.|++||+.++
T Consensus 181 h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 181 SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 88899999999999 88899999999999988773 35674 788999999999 58999887 699999999998
Q ss_pred eE-EEEeecCCCeEEEEe--eCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccc---cCCCCCcc
Q 046871 334 ES-LLLCTGEHPILQLAL--HDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVS---LEGSTPVS 405 (764)
Q Consensus 334 ~~-~~~~~~~~~V~~l~~--spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---~~~~~~~~ 405 (764)
+. .....|...|..++| +|++ ++++..||+ ++|..+. ++++|+... .++...+|
T Consensus 256 ~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-----------------~~~spd~~l~a~~d~~v~lW 317 (588)
T 2j04_A 256 SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-----------------LHVTADNIIAPYLEKKFKKW 317 (588)
T ss_dssp EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-----------------EEEECCCSSHHHHHHHHHHT
T ss_pred eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-----------------EEECCCceEEEEcCCEEEEE
Confidence 88 444478889999999 9998 888888999 9999872 112222211 13333444
Q ss_pred cCCCCCCccccCCCCceEeEEecCCcEEEEeeC
Q 046871 406 SRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA 438 (764)
Q Consensus 406 ~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~ 438 (764)
.........+.+...|..++|+|||+.+|+++.
T Consensus 318 ~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 318 STIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 333334446666566899999999999998763
No 87
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.8e-33 Score=305.48 Aligned_cols=302 Identities=18% Similarity=0.250 Sum_probs=239.9
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~ 115 (764)
.+.++.+ +++++++|++|+.||.|++||+.+ .+....+.+|...|.+++|+|++ +|++++.|++|++||+ ..
T Consensus 98 ~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~-~~ 170 (420)
T 3vl1_A 98 DYTAVDT----AKLQMRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KD 170 (420)
T ss_dssp CEEEEEE----ECSSSCEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET-TT
T ss_pred CceEEEE----EecCCCEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC-CC
Confidence 5555544 279999999999999999999987 66677788999999999999997 8999999999999998 45
Q ss_pred CeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCC
Q 046871 116 GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195 (764)
Q Consensus 116 ~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (764)
++.+..+.+|...|.+++|+ +++.+|++++.|+.|++||++++.......... ........+......
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~ 238 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE-----------NPHDGVNSIALFVGT 238 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEEEECBTT-----------BTTCCEEEEEEEECC
T ss_pred CcCceEEcCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCceeEEeecCC-----------CCCCCccEEEEecCC
Confidence 77888899999999999999 789999999999999999998754332111000 000000000000000
Q ss_pred CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCcCeEEEEEcCCCC-E
Q 046871 196 NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR-GHTDNIRSLLLDSTGR-Y 273 (764)
Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~-~ 273 (764)
.......+...+.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|+++ +
T Consensus 239 -------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 305 (420)
T 3vl1_A 239 -------------DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY 305 (420)
T ss_dssp -------------CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE
T ss_pred -------------cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE
Confidence 000123356778888999999999999999999999999998877765 5788999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCee-eEEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC----------eEEEEeec
Q 046871 274 CLSGSSDSMIRLWDLGQQRC-IHSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR----------ESLLLCTG 341 (764)
Q Consensus 274 l~sgs~Dg~I~iwdl~~~~~-~~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~----------~~~~~~~~ 341 (764)
|++|+.||.|++||+++++. +..+.. |...|+++.+ +++++|++++.||.|++|++... .......+
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 384 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN 384 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC
Confidence 99999999999999998754 778877 5667888855 47789999999999999998763 22334456
Q ss_pred CCCeEEEEeeCCc-----eEEEeCCCcEEEeeCCC
Q 046871 342 EHPILQLALHDDN-----IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 342 ~~~V~~l~~spd~-----l~~~s~dg~I~iwd~~~ 371 (764)
...|.+++|+|++ +++++.+|.+.+|+++.
T Consensus 385 ~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 385 DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 7789999999986 78888999999999864
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=285.81 Aligned_cols=277 Identities=20% Similarity=0.329 Sum_probs=233.9
Q ss_pred eeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC
Q 046871 38 INCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~ 116 (764)
.++|+| |+++ +||+|. |++|+|||+.+++......+.+|...|++++|+|++ +|++|+.|++|++|++ ..+
T Consensus 28 ~~~l~W-----S~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~-~~~ 99 (318)
T 4ggc_A 28 LNLVDW-----SSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQ 99 (318)
T ss_dssp CBCEEE-----CTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEET-TTT
T ss_pred ceEEEE-----CCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeec-CCc
Confidence 588999 7765 777764 899999999984333333445788899999999997 8999999999999997 568
Q ss_pred eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
+++..+.+|...+.++.+. +.++++++.++.+++|+....
T Consensus 100 ~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~------------------------------------- 139 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVA------------------------------------- 139 (318)
T ss_dssp EEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS-------------------------------------
T ss_pred eeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCC-------------------------------------
Confidence 8899999999999887766 679999999999999998763
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCcCeEEEEEcCCCC
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK----TIKLRGHTDNIRSLLLDSTGR 272 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~ 272 (764)
......+.+|...+..+++++++++|++++.|+.|++||+++++. ......|.+.|.++.+++++.
T Consensus 140 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 209 (318)
T 4ggc_A 140 ----------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209 (318)
T ss_dssp ----------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST
T ss_pred ----------ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC
Confidence 122344678999999999999999999999999999999988753 445667888999999999776
Q ss_pred EE---EEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe--cCCCcEEEEeCCCCeEEEEee-cCCCeE
Q 046871 273 YC---LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG--GRDLSLYLTDLATRESLLLCT-GEHPIL 346 (764)
Q Consensus 273 ~l---~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg--s~Dg~I~iwd~~~~~~~~~~~-~~~~V~ 346 (764)
.+ ++++.+++|++||........... +...+..+.|+|++..++++ +.|+.|++||+.+++.+..+. |..+|+
T Consensus 210 ~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 210 NVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp TEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred cEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 43 467789999999998887766554 77789999999999988764 479999999999999988876 688999
Q ss_pred EEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 347 QLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 347 ~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
+++|+|++ |++|+.|++|++||+.+..
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999998 9999999999999997654
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-32 Score=299.38 Aligned_cols=282 Identities=19% Similarity=0.299 Sum_probs=237.0
Q ss_pred ceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeec--cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 86 WVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTL--RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 86 ~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l--~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
.++.|.|++++.|++|. |++|+|||. .++++...+ .+|.+.|++++|+ +++++|++|+.||.|++||+.++
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~---- 179 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQ---- 179 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEET-TTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTT----
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCC----
Confidence 46789999888776665 999999997 557666654 4678899999999 78999999999999999999863
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRV 243 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~i 243 (764)
.....+.+|...+.+++++ +.+|++|+.|+.+++
T Consensus 180 --------------------------------------------~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~ 213 (420)
T 4gga_A 180 --------------------------------------------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHH 213 (420)
T ss_dssp --------------------------------------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred --------------------------------------------cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeE
Confidence 3345577899999998886 679999999999999
Q ss_pred EeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eeEEEeeecCceEEEEEcCCCC-EEE
Q 046871 244 WDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR----CIHSYAVHTDSVWALASTPTFS-HVY 317 (764)
Q Consensus 244 wd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~----~~~~l~~h~~~V~~l~~spd~~-~l~ 317 (764)
||.... ..+..+.+|...+..+.++|+++++++++.|+.|++||..+++ .+.....|...|.+++|+|++. .++
T Consensus 214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 998865 4567789999999999999999999999999999999998764 4567788999999999999665 444
Q ss_pred E--ecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe--CCCcEEEeeCCCCCCceeeecCCcceeccccc
Q 046871 318 S--GGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT--TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSF 391 (764)
Q Consensus 318 s--gs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
+ |+.|+.|++||+.+++....+.....+.++.|++++ +++++ .|+.|++||+.+++++..+.+|.
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--------- 364 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--------- 364 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS---------
T ss_pred EEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC---------
Confidence 3 568999999999999999999999999999999998 66654 68999999999988776665432
Q ss_pred cccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 392 SRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 392 s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
..|..++|+|||++|+|++.||+|+|||+....+.+..
T Consensus 365 ---------------------------~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 365 ---------------------------SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp ---------------------------SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred ---------------------------CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 24678899999999999999999999999876555443
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-32 Score=296.70 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=220.7
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCC-------cEEEEeCCCCCCcc--------ceeecccccceeEEEEeCCCeEEE
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDG-------TLKRWSLADDVGSC--------SATFESHVDWVNDAVLVGDNTLVS 100 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg-------~I~iWd~~~~~~~~--------~~~l~~h~~~V~~v~~s~d~~l~s 100 (764)
-+|.|++| +||+++|++||.|. .|++|++....... ...+..|.+.|.++++.++ .+++
T Consensus 15 ~PV~sv~f-----s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKF-----LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-IILV 88 (365)
T ss_dssp SCEEEEEE-----EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-EEEE
T ss_pred CCEEEEEE-----eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-EEEE
Confidence 37999999 79999999998643 49999997643321 2346788999999988754 3444
Q ss_pred -----------EeCCCcEEEecCCCCCeeeee--------ccccCCceEEEEEecCCCcEEEE--EeCCCeEEEEeCCCC
Q 046871 101 -----------CSSDTTLKTWNCSSDGTCIRT--------LRQHSDYVTCLAAAEKNSNIVAS--GGLGAEVFIWDIEAA 159 (764)
Q Consensus 101 -----------~s~Dg~V~vWd~~~~~~~~~~--------l~~h~~~V~~l~~~p~~~~~las--g~~dg~I~iwdl~~~ 159 (764)
++.|+++++|++......+.. ...+..++.+++|+ +|++++++ ++.|++|++||+.++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCC
Confidence 345788999987443322221 22355679999999 78887764 447899999999864
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
. ....+ .|...|++++|+|+|+++++++.++
T Consensus 168 ~------------------------------------------------~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~ 198 (365)
T 4h5i_A 168 T------------------------------------------------EKFEI-ETRGEVKDLHFSTDGKVVAYITGSS 198 (365)
T ss_dssp E------------------------------------------------EEEEE-ECSSCCCEEEECTTSSEEEEECSSC
T ss_pred c------------------------------------------------EEEEe-CCCCceEEEEEccCCceEEecccee
Confidence 1 11222 3677899999999999999998655
Q ss_pred eEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCee----eEEEeeecCceEEEEE
Q 046871 240 VVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSDS----MIRLWDLGQQRC----IHSYAVHTDSVWALAS 309 (764)
Q Consensus 240 ~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~Dg----~I~iwdl~~~~~----~~~l~~h~~~V~~l~~ 309 (764)
+++|+..+++.+. ...+|...|.+++|+|+++++++++.|+ .+++|++..... ...+..|...|++++|
T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 199 -LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp -EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred -EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 6666666776554 3456888999999999999999999887 688999876643 4567789999999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCCeEEEEe--ecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 310 TPTFSHVYSGGRDLSLYLTDLATRESLLLC--TGEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 310 spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
+|++++|++|+.|++|+|||+++++++..+ .|..+|++++|+||+ |++++.|++|+||++...
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999988765 378899999999999 999999999999999643
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-31 Score=296.34 Aligned_cols=289 Identities=28% Similarity=0.459 Sum_probs=249.8
Q ss_pred Cccceeecccccce-eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEE
Q 046871 74 GSCSATFESHVDWV-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVF 152 (764)
Q Consensus 74 ~~~~~~l~~h~~~V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~ 152 (764)
.+....+.+|.+.| .++.++ .++|++++.||+|++||+ ..++++..+.+|.+.|.+++|+ ++++++|+.||.|+
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~-g~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFC-GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLK 182 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEE-TTEEEEEETTSCEEEEET-TTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEE
T ss_pred cceeEEecccCCCcEEEEEEc-CCEEEEEECCCcEEEEEC-CCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEE
Confidence 34567788998875 555554 348999999999999997 5678889999999999999998 57999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||+.++ .....+.+|...|.+++++ ++.+
T Consensus 183 vwd~~~~------------------------------------------------~~~~~~~~h~~~v~~~~~~--~~~l 212 (445)
T 2ovr_B 183 VWNAETG------------------------------------------------ECIHTLYGHTSTVRCMHLH--EKRV 212 (445)
T ss_dssp EEETTTT------------------------------------------------EEEEEECCCSSCEEEEEEE--TTEE
T ss_pred EEECCcC------------------------------------------------cEEEEECCCCCcEEEEEec--CCEE
Confidence 9999863 2234467899999999996 6789
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
++|+.||.|++||+.+++.+..+.+|...|.++.+ +++++++|+.||.|++||+++++++.++.+|...|.+++| +
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 288 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D 288 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C
Confidence 99999999999999999999999999999999999 6889999999999999999999999999999999999999 7
Q ss_pred CCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccc
Q 046871 313 FSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSF 391 (764)
Q Consensus 313 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
+.++++++.||.|++||+++++.+..+. +...+.++.++++.+++++.|+.|++||+.+++....+..+.
T Consensus 289 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------- 359 (445)
T 2ovr_B 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN--------- 359 (445)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTT---------
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCC---------
Confidence 8899999999999999999999887765 567889999987779999999999999999887666554211
Q ss_pred cccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 392 SRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 392 s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.+...|.++++ ++++|++++.||.|++||+.+|+.++.+
T Consensus 360 ------------------------~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 360 ------------------------KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp ------------------------SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ------------------------CCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeee
Confidence 11234666666 5689999999999999999999999887
No 92
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-34 Score=319.00 Aligned_cols=287 Identities=10% Similarity=0.057 Sum_probs=219.9
Q ss_pred CCCCCeeEEEeecc-cccCCCcEEEEEeCCCcEEEEeCCCCCC---------ccceeecccccceeEEEEeCCCeEEEEe
Q 046871 33 KHCAGINCLAVLKS-SVSNGVDYLFTGSRDGTLKRWSLADDVG---------SCSATFESHVDWVNDAVLVGDNTLVSCS 102 (764)
Q Consensus 33 gH~~~V~~l~~~~~-~~S~d~~~L~sgs~Dg~I~iWd~~~~~~---------~~~~~l~~h~~~V~~v~~s~d~~l~s~s 102 (764)
+|.+.|++++|.|. .+++++.+||+|+.||+|+|||+.++.. .....+.+|...|++++|++++.|++|+
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs 284 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGF 284 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 67889999999543 1223478999999999999999986421 1235788999999999999888999999
Q ss_pred CCCcEEEecCCCCCeeeeeccccCCceEEEE--EecCCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 103 SDTTLKTWNCSSDGTCIRTLRQHSDYVTCLA--AAEKNS-NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~--~~p~~~-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
.||+|++||+.....+...+.+|...|.+++ |+ +++ .+||+|+.|++|++||++++..
T Consensus 285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD~~~~~~------------------ 345 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFNPKDIAT------------------ 345 (524)
T ss_dssp TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEECGGGHHH------------------
T ss_pred CCCEEEEEECCCCCCceEEeecccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEECCCCCc------------------
Confidence 9999999998543345566889999999994 55 666 8999999999999999976311
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK--ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG 257 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 257 (764)
...+.+|. ..|.+++|+|+++.+++++.|+.|++||++++.++..+.+
T Consensus 346 ------------------------------~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 346 ------------------------------TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp ------------------------------HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred ------------------------------ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 11122333 3478999999999999999999999999999999889999
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee-----ecCceEEEEEcCCCCEEEEecCCCcEEEEeCC-
Q 046871 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV-----HTDSVWALASTPTFSHVYSGGRDLSLYLTDLA- 331 (764)
Q Consensus 258 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~-----h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~- 331 (764)
|.+.|.+++|+|+|++|++|+.|++|++||+..+ .+..+.. +...|++++|+|++..+ ....+ +.+|+..
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~--~~~~~~~~ 471 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSS--YEVYPLTV 471 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECCC--CCCCC---
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccCC--ceeccccc
Confidence 9999999999999999999999999999998653 3332221 12257899999999855 33323 3344332
Q ss_pred CCeEE-EEeecCCCeEEEEeeCCc-----eEEEeCCCcEEEeeCCCC
Q 046871 332 TRESL-LLCTGEHPILQLALHDDN-----IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 332 ~~~~~-~~~~~~~~V~~l~~spd~-----l~~~s~dg~I~iwd~~~~ 372 (764)
++..+ ....+..+|.+++|+|++ +++|+.+|.|+||++...
T Consensus 472 ~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 472 NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 34433 344578899999999994 778888999999998653
No 93
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.5e-32 Score=290.68 Aligned_cols=266 Identities=18% Similarity=0.182 Sum_probs=222.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC--ccceeecccccceeEEEEeC--CC-eEEEEeCCCc
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG--SCSATFESHVDWVNDAVLVG--DN-TLVSCSSDTT 106 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~--~~~~~l~~h~~~V~~v~~s~--d~-~l~s~s~Dg~ 106 (764)
.||.+.|+|++| +|++++|++|+.||.|++||+.++.. +....+.+|...|.+++|++ ++ +|++++.|++
T Consensus 8 ~gH~~~v~~~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 8 SGHDDLVHDVVY-----DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCCSSCEEEEEE-----CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccccceeEEEE-----cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 499999999999 79999999999999999999986432 46677889999999999998 44 8999999999
Q ss_pred EEEecCCCCC--------eeeeeccccCCceEEEEEecCC--CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 107 LKTWNCSSDG--------TCIRTLRQHSDYVTCLAAAEKN--SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 107 V~vWd~~~~~--------~~~~~l~~h~~~V~~l~~~p~~--~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
|++||+.... ..+..+..|...|.+++|+ ++ +.+|++++.|+.|++||+++...........
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------- 154 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS------- 154 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE-------
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhccccccc-------
Confidence 9999985432 5577888999999999999 66 8999999999999999998754322110000
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCce--
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRTGSK-- 251 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~---g~~l~sgs~dg~I~iwd~~~~~~-- 251 (764)
...........|...+.+++|+|+ +.++++++.++.+.+|+...++.
T Consensus 155 ----------------------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 155 ----------------------------EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp ----------------------------EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred ----------------------------cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 000001113467788999999997 99999999999999998887765
Q ss_pred eEEeccCCcCeEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC------------------------------------
Q 046871 252 TIKLRGHTDNIRSLLLDSTG----RYCLSGSSDSMIRLWDLGQQ------------------------------------ 291 (764)
Q Consensus 252 ~~~l~~h~~~V~~l~~spdg----~~l~sgs~Dg~I~iwdl~~~------------------------------------ 291 (764)
+..+.+|...|++++|+|++ ++|++|+.||.|++||++.+
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 77788999999999999998 89999999999999999764
Q ss_pred ----------eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE
Q 046871 292 ----------RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 292 ----------~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~ 338 (764)
+++..+.+|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 67778888999999999999999999999999999999998765543
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.9e-33 Score=296.12 Aligned_cols=248 Identities=23% Similarity=0.289 Sum_probs=204.5
Q ss_pred eeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC-eeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEE
Q 046871 78 ATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG-TCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIW 154 (764)
Q Consensus 78 ~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~-~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iw 154 (764)
..+.+|.+.|++++|++++ +|++|+.|++|+|||+.... .++..+.+|.+.|.+++|+++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3457899999999999987 89999999999999984432 356788999999999999843 58899999999999999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--CCEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--GNLL 232 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g~~l 232 (764)
|++++. ......+.+|...|.+++|+|+ +.+|
T Consensus 87 d~~~~~----------------------------------------------~~~~~~~~~h~~~V~~v~~~p~~~g~~l 120 (316)
T 3bg1_A 87 REENGT----------------------------------------------WEKSHEHAGHDSSVNSVCWAPHDYGLIL 120 (316)
T ss_dssp CCSSSC----------------------------------------------CCEEEEECCCSSCCCEEEECCTTTCSCE
T ss_pred ECCCCc----------------------------------------------ceEEEEccCCCCceEEEEECCCCCCcEE
Confidence 997531 0112345678999999999997 7899
Q ss_pred EEEeCCCeEEEEeCCCCce---eEEeccCCcCeEEEEEcCC-----------------CCEEEEEeCCCcEEEEeCCCC-
Q 046871 233 VSGGTEKVVRVWDPRTGSK---TIKLRGHTDNIRSLLLDST-----------------GRYCLSGSSDSMIRLWDLGQQ- 291 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~spd-----------------g~~l~sgs~Dg~I~iwdl~~~- 291 (764)
++|+.|+.|++||++.+.. ...+.+|...|.+++|+|+ +++|++|+.|++|++||++..
T Consensus 121 asgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 200 (316)
T 3bg1_A 121 ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200 (316)
T ss_dssp EEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred EEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence 9999999999999987632 3456789999999999997 478999999999999999755
Q ss_pred --eeeEEEeeecCceEEEEEcCCC----CEEEEecCCCcEEEEeCCCC---e--EEEEeecCCCeEEEEeeCCc--eEEE
Q 046871 292 --RCIHSYAVHTDSVWALASTPTF----SHVYSGGRDLSLYLTDLATR---E--SLLLCTGEHPILQLALHDDN--IWVA 358 (764)
Q Consensus 292 --~~~~~l~~h~~~V~~l~~spd~----~~l~sgs~Dg~I~iwd~~~~---~--~~~~~~~~~~V~~l~~spd~--l~~~ 358 (764)
+++.++.+|.+.|++++|+|++ .+|++++.|++|++|++.+. . ......+...|.+++|+|++ |+++
T Consensus 201 ~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 201 QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 5778889999999999999986 88999999999999998762 1 12233467899999999999 8999
Q ss_pred eCCCcEEEeeCCC
Q 046871 359 TTDSSVHRWPAEG 371 (764)
Q Consensus 359 s~dg~I~iwd~~~ 371 (764)
+.|+.|++|+...
T Consensus 281 ~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 281 GGDNKVTLWKESV 293 (316)
T ss_dssp ESSSCEEEEEECT
T ss_pred cCCCeEEEEEECC
Confidence 9999999999863
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=301.48 Aligned_cols=349 Identities=10% Similarity=0.103 Sum_probs=237.7
Q ss_pred ccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCe----------eeeeccccC------------CceEEEEEecCC
Q 046871 82 SHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGT----------CIRTLRQHS------------DYVTCLAAAEKN 138 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~----------~~~~l~~h~------------~~V~~l~~~p~~ 138 (764)
.|.+.|++++|+|++ +|++|+.||.|+||++..... ....+.+|. ..|.+++|+ ++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~-~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL-PQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC-CC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc-CC
Confidence 468899999999997 899999999999999853221 577888998 889999999 55
Q ss_pred C--cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCc-CCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC
Q 046871 139 S--NIVASGGLGAEVFIWDIEAALAPSKSGDAME-DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG 215 (764)
Q Consensus 139 ~--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 215 (764)
+ .+|++++.|+.|++||+.+............ ....... ..........+... . .. . ..........+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~---~-~~-~---~~~~~~~~~~~ 175 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDP-TTVTTLRVPVFRPM---D-LM-V---EASPRRIFANA 175 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------C-CCCCSCCCCEEEEE---E-EE-E---EEEEEEEECSC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCc-ccccceEeccccch---h-ee-e---eccceEEeccC
Confidence 5 7999999999999999976432100000000 0000000 00000000000000 0 00 0 00001122467
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeE-------EeccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 046871 216 HKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-SKTI-------KLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLW 286 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-~~~~-------~l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iw 286 (764)
|...|++++|+|++++|++| .|+.|++||+++. +.+. .+.+|...|.+++|+|++ ++|++|+.||+|++|
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 99999999999999999999 7999999999844 3333 356899999999999998 999999999999999
Q ss_pred eCCCCee----eEEEeeecC------------ceEEEEEcCCCCEEEEecCCCcEEEEeCCC-CeEEEEeecCCC-----
Q 046871 287 DLGQQRC----IHSYAVHTD------------SVWALASTPTFSHVYSGGRDLSLYLTDLAT-RESLLLCTGEHP----- 344 (764)
Q Consensus 287 dl~~~~~----~~~l~~h~~------------~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~----- 344 (764)
|+++++. +..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++.+..+.....
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence 9999887 788888876 8999999999999999998 9999999997 777766654332
Q ss_pred -----------eEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCC
Q 046871 345 -----------ILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEP 411 (764)
Q Consensus 345 -----------V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 411 (764)
+..++|+|++ |++++.|+.|++||+.+++.. .+..+...........+......+... .....
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 409 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRK---KDEIS 409 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCC---TTCEE
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcc---ccccc
Confidence 3349999998 899999999999999988765 333222111101111110000000000 00001
Q ss_pred CccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEc
Q 046871 412 NFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 412 ~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi 447 (764)
...+.....|..++|+|++.+|++++.++ +++|.-
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 11223345689999999999999998775 888864
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=279.21 Aligned_cols=275 Identities=20% Similarity=0.313 Sum_probs=231.3
Q ss_pred eeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeec--cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCC
Q 046871 87 VNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTL--RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 87 V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l--~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~ 164 (764)
.++|+|++++.|++| .|++|+|||+ .++++++.+ .+|...|.+++|+ +++++|++|+.|+.|++||++++
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~----- 99 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQ----- 99 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT-----
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCc-----
Confidence 578999999866655 5999999997 557776655 4678889999999 78999999999999999999873
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iw 244 (764)
.......+|...+.++.+. +..+++|+.++.+++|
T Consensus 100 -------------------------------------------~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 100 -------------------------------------------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHH 134 (318)
T ss_dssp -------------------------------------------EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred -------------------------------------------eeEEEecCccceEEEeecC--CCEEEEEecCCceEee
Confidence 2334567788888877665 6799999999999999
Q ss_pred eCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee----eEEEeeecCceEEEEEcCCCCEE---
Q 046871 245 DPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC----IHSYAVHTDSVWALASTPTFSHV--- 316 (764)
Q Consensus 245 d~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~----~~~l~~h~~~V~~l~~spd~~~l--- 316 (764)
+.... ..+..+.+|...+..+.+++++++|++++.|++|++||+++++. ......|.+.|.+++++|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence 98876 45677889999999999999999999999999999999987653 45566788899999999876543
Q ss_pred EEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe--CCCcEEEeeCCCCCCceeeecCCcceecccccc
Q 046871 317 YSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT--TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFS 392 (764)
Q Consensus 317 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s 392 (764)
++++.++.|++||...........+...+..+.|++++ +++++ .|+.|++||+.+++++..+.+|
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH----------- 283 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------- 283 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-----------
T ss_pred EecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-----------
Confidence 46788999999999999998888899999999999998 55544 6899999999998877666543
Q ss_pred ccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 393 RARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
...|.+++|+|||++|+|++.||+|+|||+...
T Consensus 284 -------------------------~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 284 -------------------------TSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -------------------------SSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -------------------------CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 234678899999999999999999999998754
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.6e-31 Score=285.09 Aligned_cols=285 Identities=13% Similarity=0.104 Sum_probs=235.7
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCC-CccceeecccccceeEEEEeCCC--eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDV-GSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~-~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~ 108 (764)
.+|.+.|++++| +|++++|++|+.||.|++||+.+.. ......+.+|...|.+++|++++ .|++++.|+.|+
T Consensus 8 ~~h~~~v~~~~~-----s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 8 QAPKDYISDIKI-----IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEE-----EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cCCCCcEEEEEE-----cCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 389999999999 7899999999999999999998743 11345566899999999999885 599999999999
Q ss_pred EecC-CCCCeeeeeccc--cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 109 TWNC-SSDGTCIRTLRQ--HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 109 vWd~-~~~~~~~~~l~~--h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+||+ .. + ....+.. |...|.+++|+ + +.+|++++.|+.|++||+++......
T Consensus 83 ~wd~~~~-~-~~~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------- 137 (342)
T 1yfq_A 83 KVDLIGS-P-SFQALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVI--------------------- 137 (342)
T ss_dssp EECSSSS-S-SEEECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCE---------------------
T ss_pred EEEeccC-C-ceEeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccc---------------------
Confidence 9997 44 3 3467778 99999999999 5 89999999999999999875100000
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cc--eeEEeccCCcCe
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT-GS--KTIKLRGHTDNI 262 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~-~~--~~~~l~~h~~~V 262 (764)
. ........+ .|...|.+++|++++ +++++.|+.|++||+++ +. .......|...|
T Consensus 138 -------------~-----~~~~~~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i 196 (342)
T 1yfq_A 138 -------------A-----VKNLNSNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI 196 (342)
T ss_dssp -------------E-----EEESCSSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE
T ss_pred -------------c-----ccCCeeeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCce
Confidence 0 000001112 277889999999876 99999999999999998 54 334455688899
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCCC------eeeEEEeeecC---------ceEEEEEcCCCCEEEEecCCCcEE
Q 046871 263 RSLLLDS-TGRYCLSGSSDSMIRLWDLGQQ------RCIHSYAVHTD---------SVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 263 ~~l~~sp-dg~~l~sgs~Dg~I~iwdl~~~------~~~~~l~~h~~---------~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
.+++|+| +++++++++.||.|++|++... +....+..|.. .|.+++|+|++++|++++.||.|+
T Consensus 197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 9999999 9999999999999999999887 88888988866 999999999999999999999999
Q ss_pred EEeCCCCeEEEEee-c-CCCeEEEEeeCCc--eEEEeCCCc-EEEeeC
Q 046871 327 LTDLATRESLLLCT-G-EHPILQLALHDDN--IWVATTDSS-VHRWPA 369 (764)
Q Consensus 327 iwd~~~~~~~~~~~-~-~~~V~~l~~spd~--l~~~s~dg~-I~iwd~ 369 (764)
+||+.+++.+..+. + ..+|.+++ |++ +++++.|+. .+.|..
T Consensus 277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99999999888776 4 78899999 776 899999998 666653
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.8e-32 Score=297.68 Aligned_cols=285 Identities=19% Similarity=0.261 Sum_probs=234.0
Q ss_pred CeeEEEeecccccCCCcE-EEEEeCCCcEEEEeCCCCCC--ccceeecccccceeEEEEeC-CC-eEEEEeCCCcEEEec
Q 046871 37 GINCLAVLKSSVSNGVDY-LFTGSRDGTLKRWSLADDVG--SCSATFESHVDWVNDAVLVG-DN-TLVSCSSDTTLKTWN 111 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~-L~sgs~Dg~I~iWd~~~~~~--~~~~~l~~h~~~V~~v~~s~-d~-~l~s~s~Dg~V~vWd 111 (764)
..+++++ +|+... +++++.||.|+||++..... .....+.+|.+.|++++|+| ++ +|++++.||+|++||
T Consensus 36 ~~~~~~~-----~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 36 DSGFCAV-----NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SSCSEEE-----CSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred CCCcEEE-----CCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 4455666 565543 44578999999999965311 34566889999999999999 65 899999999999999
Q ss_pred CCCCC------eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 112 CSSDG------TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 112 ~~~~~------~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
+.... ..+..+.+|...|.+++|+|.+.++|++++.|+.|++||+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------------------------- 164 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------------------------- 164 (402)
T ss_dssp CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------------------
T ss_pred ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------------------
Confidence 85432 5677888999999999999443479999999999999999863
Q ss_pred ccceeecCCCCcccccccCCCCccceec--cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ccCCcC-
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAA--KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKL-RGHTDN- 261 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~- 261 (764)
.....+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+|.+.
T Consensus 165 ----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 165 ----------------------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222 (402)
T ss_dssp ----------------------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred ----------------------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence 122334 678999999999999999999999999999999999999988 788876
Q ss_pred eEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCee-eEEEe-eecCceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCeE
Q 046871 262 IRSLLLDSTGRYCLSG---SSDSMIRLWDLGQQRC-IHSYA-VHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLATRES 335 (764)
Q Consensus 262 V~~l~~spdg~~l~sg---s~Dg~I~iwdl~~~~~-~~~l~-~h~~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~ 335 (764)
+.++.|+|++++|++| +.|+.|++||+++++. +.... .|...+.+++|+|++++|+ +|+.||.|++||+.+++.
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 8999999999999999 7999999999988664 33333 4677899999999999997 566799999999998873
Q ss_pred ----EEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCC
Q 046871 336 ----LLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 336 ----~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~ 374 (764)
+..+.+..+|.+++|+|++.+.++.++.+++|++.++..
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEE
T ss_pred ceEeecccccCCcccceEEecccccceecceeEEEEEcCCCcE
Confidence 233335689999999999944556788999999987643
No 99
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=291.63 Aligned_cols=251 Identities=20% Similarity=0.235 Sum_probs=217.4
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V~ 108 (764)
.||.+.|++++| +|++++|++|+.||.|+|||+..........+.+|...|++++|+++ + +|++++.|+.|+
T Consensus 8 ~~h~~~v~~~~~-----s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 8 NAHNELIHDAVL-----DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp EECCCCEEEEEE-----CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCCcccEEEEEE-----cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 489999999999 79999999999999999999986557778889999999999999865 4 899999999999
Q ss_pred EecCCCCCe--eeeeccccCCceEEEEEecCC--CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 109 TWNCSSDGT--CIRTLRQHSDYVTCLAAAEKN--SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 109 vWd~~~~~~--~~~~l~~h~~~V~~l~~~p~~--~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
+||+. .+. ....+..|...|.+++|+ ++ +.+|++++.|+.|++||+.....
T Consensus 83 iwd~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~----------------------- 137 (379)
T 3jrp_A 83 IWKEE-NGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGT----------------------- 137 (379)
T ss_dssp EEEEE-TTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSC-----------------------
T ss_pred EEEcC-CCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCc-----------------------
Confidence 99984 354 677788899999999999 56 89999999999999999986311
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-------------CCCEEEEEeCCCeEEEEeCCCCc-
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-------------SGNLLVSGGTEKVVRVWDPRTGS- 250 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-------------~g~~l~sgs~dg~I~iwd~~~~~- 250 (764)
.....+..|...|.+++|+| ++.+|++|+.|+.|++||+++++
T Consensus 138 -----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 138 -----------------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp -----------------------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred -----------------------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 11233567889999999999 69999999999999999998765
Q ss_pred ---eeEEeccCCcCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCe---eeEE--EeeecCceEEEEEcCCCCEEEEe
Q 046871 251 ---KTIKLRGHTDNIRSLLLDST---GRYCLSGSSDSMIRLWDLGQQR---CIHS--YAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 251 ---~~~~l~~h~~~V~~l~~spd---g~~l~sgs~Dg~I~iwdl~~~~---~~~~--l~~h~~~V~~l~~spd~~~l~sg 319 (764)
....+.+|...|.+++|+|+ +++|++++.||.|++||+.++. .... ...|...|++++|+|++++|+++
T Consensus 195 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 195 TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 44677889999999999999 8999999999999999998764 2222 23488899999999999999999
Q ss_pred cCCCcEEEEeCCCCeE
Q 046871 320 GRDLSLYLTDLATRES 335 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~ 335 (764)
+.||.|++|++.....
T Consensus 275 ~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 275 GGDNKVTLWKENLEGK 290 (379)
T ss_dssp ESSSSEEEEEEEETTE
T ss_pred cCCCcEEEEeCCCCCc
Confidence 9999999999985543
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-31 Score=295.51 Aligned_cols=289 Identities=18% Similarity=0.306 Sum_probs=232.1
Q ss_pred eeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 046871 78 ATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 157 (764)
Q Consensus 78 ~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~ 157 (764)
....+|...|.++.+ .++.+++|+.||+|++||+ .+++....+.+|.+.|.+++| ++++|++|+.||.|++||+.
T Consensus 127 ~~~~~~~~~v~~~~~-d~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 127 HCRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp ECCCSSCCCEEEEEC-CSSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESS
T ss_pred ecccCCCCcEEEEEE-CCCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECC
Confidence 334467778998887 2348999999999999997 567888899999999999998 47899999999999999998
Q ss_pred CCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC
Q 046871 158 AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT 237 (764)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~ 237 (764)
++ .....+.+|...|.+++|+ ++.+++|+.
T Consensus 202 ~~------------------------------------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~ 231 (435)
T 1p22_A 202 TG------------------------------------------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSK 231 (435)
T ss_dssp SC------------------------------------------------CEEEEECCCCSCEEEEECC--TTEEEEEET
T ss_pred CC------------------------------------------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeC
Confidence 63 2234466789999999997 469999999
Q ss_pred CCeEEEEeCCCCcee---EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC
Q 046871 238 EKVVRVWDPRTGSKT---IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS 314 (764)
Q Consensus 238 dg~I~iwd~~~~~~~---~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~ 314 (764)
||.|++||+++++.. ..+.+|...|.++.| ++++|++|+.||.|++||+++++++.++..|...|.+++++ +.
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~ 307 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR 307 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CC
Confidence 999999999988765 677899999999999 68899999999999999999999999999999999999994 67
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccc
Q 046871 315 HVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSR 393 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~ 393 (764)
++++|+.||.|++||+++++.+..+. +...|.+++|++..+++|+.||.|++||+.++........
T Consensus 308 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~------------- 374 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG------------- 374 (435)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT-------------
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcccccc-------------
Confidence 99999999999999999999887776 6788999999655599999999999999865431110000
Q ss_pred cccccCCCCCcccCCCCCCcccc-CCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeee
Q 046871 394 ARVSLEGSTPVSSRFKEPNFTIP-GIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVED 455 (764)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~-g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~ 455 (764)
......+. +...|.+++| |+++|++++.||+|++||+.++.....
T Consensus 375 ---------------~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 375 ---------------TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp ---------------TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred ---------------chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 00001111 2234667777 889999999999999999998766543
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.4e-32 Score=295.34 Aligned_cols=289 Identities=17% Similarity=0.205 Sum_probs=237.2
Q ss_pred eeEEEEeCCC--eEEEEeCCCcEEEecCCCCCe---eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 87 VNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGT---CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 87 V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~---~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
...++++++. .+++++.||.|+||++...+. ....+.+|.+.|.+++|+|.++++|++|+.||.|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4457888875 445678899999999855443 34567889999999999954899999999999999999987422
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCe
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKV 240 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~ 240 (764)
... .......+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 117 ~~~-----------------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 117 VLP-----------------------------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp SSC-----------------------------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred ccc-----------------------------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 110 012234577899999999999998 69999999999
Q ss_pred EEEEeCCCCceeEEe--ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE-eeecCc-eEEEEEcCCCCEE
Q 046871 241 VRVWDPRTGSKTIKL--RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY-AVHTDS-VWALASTPTFSHV 316 (764)
Q Consensus 241 I~iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l-~~h~~~-V~~l~~spd~~~l 316 (764)
|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++++..+ ..|.+. +.+++|+|++.+|
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 999999999999999 889999999999999999999999999999999999999998 688876 8999999999999
Q ss_pred EEe---cCCCcEEEEeCCCCeE---EEEeecCCCeEEEEeeCCc--eEE-EeCCCcEEEeeCCCCCC-ceeeecCCccee
Q 046871 317 YSG---GRDLSLYLTDLATRES---LLLCTGEHPILQLALHDDN--IWV-ATTDSSVHRWPAEGRNP-QKVFQRGGSFIA 386 (764)
Q Consensus 317 ~sg---s~Dg~I~iwd~~~~~~---~~~~~~~~~V~~l~~spd~--l~~-~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~ 386 (764)
++| +.|+.|++||+++++. .....+...+.+++|+|++ +++ ++.|+.|++|++.++++ ...+..+
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~----- 310 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF----- 310 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-----
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-----
Confidence 999 8999999999988654 3334567789999999998 544 55799999999998764 3333211
Q ss_pred ccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEE
Q 046871 387 GNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 387 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~ 452 (764)
.+...+..++|+||+.++++ .++.+++|++.++++
T Consensus 311 -----------------------------~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 311 -----------------------------SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp -----------------------------CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred -----------------------------ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 12345778999999998875 466999999998765
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.7e-32 Score=286.12 Aligned_cols=305 Identities=14% Similarity=0.129 Sum_probs=221.5
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC---eeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeE
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG---TCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEV 151 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~---~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I 151 (764)
...+.+|.+.|++++|+|++ +|++++.||.|++||+.... .....+.+|...|.+++|+|. ++.+|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 44568999999999999997 89999999999999985432 466778899999999999954 68999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--C
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--G 229 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g 229 (764)
++||++++...... ........+..|...|.+++|+|+ +
T Consensus 84 ~vwd~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 124 (351)
T 3f3f_A 84 KLWEEDPDQEECSG---------------------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLG 124 (351)
T ss_dssp EEEEECTTSCTTSS---------------------------------------CSEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred EEEecCCCcccccc---------------------------------------cCcceeeeecccCCceeEEEEcCCCCC
Confidence 99999874321100 001223456788999999999999 9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEec-------------cCCcCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCee
Q 046871 230 NLLVSGGTEKVVRVWDPRTGSKTIKLR-------------GHTDNIRSLLLDST---GRYCLSGSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~spd---g~~l~sgs~Dg~I~iwdl~~~~~ 293 (764)
++|++++.||.|++||+++++.+..+. .|...+.+++|+|+ +.++++++.|+.+.+|+...++.
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~ 204 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL 204 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence 999999999999999999887654433 67889999999997 89999999999998888877765
Q ss_pred --eEEEeeecCceEEEEEcCCC----CEEEEecCCCcEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc--eEE----EeC
Q 046871 294 --IHSYAVHTDSVWALASTPTF----SHVYSGGRDLSLYLTDLATRESLLLCTG-EHPILQLALHDDN--IWV----ATT 360 (764)
Q Consensus 294 --~~~l~~h~~~V~~l~~spd~----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~--l~~----~s~ 360 (764)
+..+.+|...|++++|+|++ .+|++++.||.|++||++.+........ ...+......+.. ... +..
T Consensus 205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT 284 (351)
T ss_dssp EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence 77788999999999999998 8999999999999999987654433221 2222222233322 111 112
Q ss_pred CCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCC
Q 046871 361 DSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAG 440 (764)
Q Consensus 361 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG 440 (764)
...+.+|+....+....+. .+...|..++|+||+++|++++.||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~------------------------------------~h~~~v~~~~~s~~~~~l~s~~~dg 328 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEHD------------------------------------DHNGEVWSVSWNLTGTILSSAGDDG 328 (351)
T ss_dssp ------CCSEEEEEEEEEC------------------------------------TTSSCEEEEEECSSSCCEEEEETTS
T ss_pred ceeeeecccccccEEEEEe------------------------------------cccccEEEEEEcCCCCEEEEecCCC
Confidence 2233333322221111111 1234588999999999999999999
Q ss_pred cEEEEEccccEEeeec
Q 046871 441 SVKLWEITRGVVVEDY 456 (764)
Q Consensus 441 ~V~lWdi~tg~~i~~~ 456 (764)
.|++||+.+++.++.+
T Consensus 329 ~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 329 KVRLWKATYSNEFKCM 344 (351)
T ss_dssp CEEEEEECTTSCEEEE
T ss_pred cEEEEecCcCcchhhe
Confidence 9999999988655544
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.6e-31 Score=281.29 Aligned_cols=282 Identities=17% Similarity=0.231 Sum_probs=231.0
Q ss_pred CCCCCCeeEEEeecccccCC---CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcE
Q 046871 32 TKHCAGINCLAVLKSSVSNG---VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTL 107 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d---~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V 107 (764)
.+|.+.|+|++| +|+ |++|++|+.||.|++||+.+........+.+|...|.+++|+|++ +|++++.|+.|
T Consensus 36 ~~h~~~v~~~~~-----~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 36 SSPDDSIGCLSF-----SPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp SCCSSCEEEEEE-----CCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCCceEEEEE-----cCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 589999999999 687 699999999999999999874344457889999999999999997 89999999999
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEE--ecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAA--AEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLP 185 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~--~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (764)
++||+. .+.... +..|...|.+++| + +++.+|++++.|+.|++||++++..
T Consensus 111 ~iwd~~-~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~------------------------ 163 (368)
T 3mmy_A 111 KMWDLS-SNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNP------------------------ 163 (368)
T ss_dssp EEEETT-TTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSC------------------------
T ss_pred EEEEcC-CCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcE------------------------
Confidence 999974 455544 5679999999999 6 7788999999999999999986421
Q ss_pred ccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec--cCCcCeE
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR--GHTDNIR 263 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~ 263 (764)
...+..+ ..+.++.+. +..+++++.++.+++||++......... .+...+.
T Consensus 164 ------------------------~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 216 (368)
T 3mmy_A 164 ------------------------MMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216 (368)
T ss_dssp ------------------------SEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEE
T ss_pred ------------------------EEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCc
Confidence 1122222 356666666 4588999999999999998775443322 2345566
Q ss_pred EEEEcCCCCE----EEEEeCCCcEEEEeCCCC---eeeEEEeeecC------------ceEEEEEcCCCCEEEEecCCCc
Q 046871 264 SLLLDSTGRY----CLSGSSDSMIRLWDLGQQ---RCIHSYAVHTD------------SVWALASTPTFSHVYSGGRDLS 324 (764)
Q Consensus 264 ~l~~spdg~~----l~sgs~Dg~I~iwdl~~~---~~~~~l~~h~~------------~V~~l~~spd~~~l~sgs~Dg~ 324 (764)
++.+.++... +++++.||.|++||+... ..+..+..|.. .|++++|+|++++|++++.||.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 296 (368)
T 3mmy_A 217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR 296 (368)
T ss_dssp EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC
T ss_pred eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe
Confidence 6766665544 999999999999999887 66778887776 7999999999999999999999
Q ss_pred EEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC
Q 046871 325 LYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~ 372 (764)
|++||+.+++.+..+. +..+|.+++|+|++ |++++.|+..+.|++...
T Consensus 297 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 297 FSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999999887776 57899999999999 899998887666665443
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-31 Score=287.84 Aligned_cols=287 Identities=11% Similarity=0.110 Sum_probs=216.9
Q ss_pred ccceeEEEEeCCC-eEEEEeCCC-------cEEEecCCCCCe---------eeeeccccCCceEEEEEecCCCcEEEEEe
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSDT-------TLKTWNCSSDGT---------CIRTLRQHSDYVTCLAAAEKNSNIVASGG 146 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~Dg-------~V~vWd~~~~~~---------~~~~l~~h~~~V~~l~~~p~~~~~lasg~ 146 (764)
..+|.+++|+||+ +|++|+.|. .|++|++..... ....+..|.+.|.++++. ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence 4689999999998 677776543 499999754322 112467788899999887 55666654
Q ss_pred -----------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC
Q 046871 147 -----------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG 215 (764)
Q Consensus 147 -----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 215 (764)
.|+.+++|++........ ... .........
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~-----------------------------------~~~----~~~~~~~~~ 131 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLE-----------------------------------FLT----SVDFDASTN 131 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEE-----------------------------------EEE----EECSSCCCC
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEE-----------------------------------Eee----eeceeecCC
Confidence 467788888764311000 000 000011233
Q ss_pred CCCcEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCee
Q 046871 216 HKESVYALAMNDSGNLLVSG--GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 216 ~~~~V~~l~~sp~g~~l~sg--s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~ 293 (764)
+...+.+++|+|||++++++ +.|+.|++||+.+++.+..+. |...|.+++|+|||++|++++.+ .+++|+..+++.
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence 45668999999999998754 478999999999999998886 78899999999999999999855 566777777766
Q ss_pred eEE--EeeecCceEEEEEcCCCCEEEEecCCC----cEEEEeCCCCeEEE-----EeecCCCeEEEEeeCCc--eEEEeC
Q 046871 294 IHS--YAVHTDSVWALASTPTFSHVYSGGRDL----SLYLTDLATRESLL-----LCTGEHPILQLALHDDN--IWVATT 360 (764)
Q Consensus 294 ~~~--l~~h~~~V~~l~~spd~~~l~sgs~Dg----~I~iwd~~~~~~~~-----~~~~~~~V~~l~~spd~--l~~~s~ 360 (764)
+.. ...|...|.+++|+|+++++++++.|+ .+++|++....... ...+..+|++++|+|++ |++|+.
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 543 456888999999999999999999887 68889987665322 23357789999999999 899999
Q ss_pred CCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCC
Q 046871 361 DSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAG 440 (764)
Q Consensus 361 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG 440 (764)
|++|+|||+.+++++..+... +...|.+++|+|||++|+|++.|+
T Consensus 290 D~~V~iwd~~~~~~~~~~~~g-----------------------------------H~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQA-----------------------------------HSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTS-----------------------------------SSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCEEEEEECCCCcEEEEecCc-----------------------------------ccCCEEEEEECCCCCEEEEEeCCC
Confidence 999999999988766554211 123478899999999999999999
Q ss_pred cEEEEEccc
Q 046871 441 SVKLWEITR 449 (764)
Q Consensus 441 ~V~lWdi~t 449 (764)
+|+|||+..
T Consensus 335 tvrvw~ip~ 343 (365)
T 4h5i_A 335 TIHIIKLPL 343 (365)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEcCC
Confidence 999999964
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-31 Score=283.21 Aligned_cols=253 Identities=21% Similarity=0.255 Sum_probs=215.1
Q ss_pred ccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC-CCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeE
Q 046871 75 SCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS-DGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEV 151 (764)
Q Consensus 75 ~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~-~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I 151 (764)
+++..+.+|.+.|++++|+|++ +|++++.|+.|++|++.. .......+.+|...|.+++|+++ ++.+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4567889999999999999997 899999999999999842 35667788999999999999833 28999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--C
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--G 229 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g 229 (764)
++||+.++. .........|...|.+++|+|+ +
T Consensus 82 ~iwd~~~~~----------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 82 LIWKEENGR----------------------------------------------WSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp EEEEEETTE----------------------------------------------EEEEEEECCCSSCEEEEEECCGGGC
T ss_pred EEEEcCCCc----------------------------------------------eeEeeeecCCCcceEEEEeCCCCCC
Confidence 999997631 0123446678999999999999 9
Q ss_pred CEEEEEeCCCeEEEEeCCCCc--eeEEeccCCcCeEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCe--
Q 046871 230 NLLVSGGTEKVVRVWDPRTGS--KTIKLRGHTDNIRSLLLDS-------------TGRYCLSGSSDSMIRLWDLGQQR-- 292 (764)
Q Consensus 230 ~~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp-------------dg~~l~sgs~Dg~I~iwdl~~~~-- 292 (764)
.+|++++.|+.|++||++++. ....+..|...|.+++|+| ++.+|++++.|+.|++||++++.
T Consensus 116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 999999999999999998873 4556778999999999999 69999999999999999997654
Q ss_pred --eeEEEeeecCceEEEEEcCC---CCEEEEecCCCcEEEEeCCCCe---EEEEe---ecCCCeEEEEeeCCc--eEEEe
Q 046871 293 --CIHSYAVHTDSVWALASTPT---FSHVYSGGRDLSLYLTDLATRE---SLLLC---TGEHPILQLALHDDN--IWVAT 359 (764)
Q Consensus 293 --~~~~l~~h~~~V~~l~~spd---~~~l~sgs~Dg~I~iwd~~~~~---~~~~~---~~~~~V~~l~~spd~--l~~~s 359 (764)
++..+..|...|.+++|+|+ +.+|++++.||.|++||+.++. ..... .+...|.+++|+|++ +++++
T Consensus 196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 55678889999999999999 8999999999999999998864 22222 257789999999999 88899
Q ss_pred CCCcEEEeeCCCCC
Q 046871 360 TDSSVHRWPAEGRN 373 (764)
Q Consensus 360 ~dg~I~iwd~~~~~ 373 (764)
.||.|++|++....
T Consensus 276 ~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 276 GDNKVTLWKENLEG 289 (379)
T ss_dssp SSSSEEEEEEEETT
T ss_pred CCCcEEEEeCCCCC
Confidence 99999999998543
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=1.9e-30 Score=276.65 Aligned_cols=277 Identities=12% Similarity=0.151 Sum_probs=228.7
Q ss_pred eecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCC--eeeeeccccCCceEEEEEecCCCc-EEEEEeCCCeEEEE
Q 046871 79 TFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDG--TCIRTLRQHSDYVTCLAAAEKNSN-IVASGGLGAEVFIW 154 (764)
Q Consensus 79 ~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~--~~~~~l~~h~~~V~~l~~~p~~~~-~lasg~~dg~I~iw 154 (764)
...+|.+.|.+++|+|++ +|++++.|+.|++|++.... .....+..|...|.+++|+ +++. +|++|+.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI-DNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE-ESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC-CCCCcEEEEEcCCCeEEEE
Confidence 346899999999999986 89999999999999985433 1345566899999999999 6788 99999999999999
Q ss_pred eC-CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC--CCCcEEEEEEcCCCCE
Q 046871 155 DI-EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG--HKESVYALAMNDSGNL 231 (764)
Q Consensus 155 dl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~V~~l~~sp~g~~ 231 (764)
|+ .++. ...+.+ |...|.+++|+| +++
T Consensus 85 d~~~~~~-------------------------------------------------~~~~~~~~~~~~v~~l~~~~-~~~ 114 (342)
T 1yfq_A 85 DLIGSPS-------------------------------------------------FQALTNNEANLGICRICKYG-DDK 114 (342)
T ss_dssp CSSSSSS-------------------------------------------------EEECBSCCCCSCEEEEEEET-TTE
T ss_pred EeccCCc-------------------------------------------------eEeccccCCCCceEEEEeCC-CCE
Confidence 99 7531 123456 899999999999 999
Q ss_pred EEEEeCCCeEEEEeCCC---------CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cee--eEEEee
Q 046871 232 LVSGGTEKVVRVWDPRT---------GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-QRC--IHSYAV 299 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-~~~--~~~l~~ 299 (764)
|++++.|+.|++||+++ ++.+..+. |...|.+++|++++ +++++.|+.|++||+++ +.. ......
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 191 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG 191 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECS
T ss_pred EEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecC
Confidence 99999999999999988 77777776 89999999999887 99999999999999988 543 334456
Q ss_pred ecCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCC------eEEEEee-cC---------CCeEEEEeeCCc--eEEEeC
Q 046871 300 HTDSVWALASTP-TFSHVYSGGRDLSLYLTDLATR------ESLLLCT-GE---------HPILQLALHDDN--IWVATT 360 (764)
Q Consensus 300 h~~~V~~l~~sp-d~~~l~sgs~Dg~I~iwd~~~~------~~~~~~~-~~---------~~V~~l~~spd~--l~~~s~ 360 (764)
|...|.+++|+| ++++|++++.||.|++|+++.. +....+. +. .+|.+++|+|++ |++++.
T Consensus 192 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 271 (342)
T 1yfq_A 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS 271 (342)
T ss_dssp CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC
Confidence 788999999999 9999999999999999999876 5555544 32 389999999998 999999
Q ss_pred CCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCC
Q 046871 361 DSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAG 440 (764)
Q Consensus 361 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG 440 (764)
|+.|++||+.+++....+..++ ...|..++ +|+++|++++.||
T Consensus 272 dg~i~vwd~~~~~~~~~~~~~h-----------------------------------~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 272 DGIISCWNLQTRKKIKNFAKFN-----------------------------------EDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp TSCEEEEETTTTEEEEECCCCS-----------------------------------SSEEEEEE--ECSSEEEEEEECT
T ss_pred CceEEEEcCccHhHhhhhhccc-----------------------------------CCCceEec--CCCCeEEEEecCC
Confidence 9999999999877655544321 12245555 8999999999999
Q ss_pred c-EEEEE
Q 046871 441 S-VKLWE 446 (764)
Q Consensus 441 ~-V~lWd 446 (764)
. .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 44443
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.9e-30 Score=285.36 Aligned_cols=285 Identities=12% Similarity=0.150 Sum_probs=231.6
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCC-ccceeec--------------------------------
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVG-SCSATFE-------------------------------- 81 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~-~~~~~l~-------------------------------- 81 (764)
..+|+|++| +++|++|+++ .++.|++||+.+++. ..+..+.
T Consensus 4 ~~p~~~v~~-----s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 4 IHPLQNLLT-----SRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp ECCCCEEEE-----CSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred cccEEEEEe-----cCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence 357899998 8999977766 478999999987430 0333333
Q ss_pred ----------------------ccccceeEEEEeCCC-eE-EEEeCCCcEEEecCCC-CCeeeeecc--ccCCceEEEEE
Q 046871 82 ----------------------SHVDWVNDAVLVGDN-TL-VSCSSDTTLKTWNCSS-DGTCIRTLR--QHSDYVTCLAA 134 (764)
Q Consensus 82 ----------------------~h~~~V~~v~~s~d~-~l-~s~s~Dg~V~vWd~~~-~~~~~~~l~--~h~~~V~~l~~ 134 (764)
+|.+.|.+++|+|++ .| ++++.|++|++||+.. .+.++..+. .|...|.+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence 344479999999997 54 8899999999999852 466777765 56789999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc
Q 046871 135 AEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK 214 (764)
Q Consensus 135 ~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 214 (764)
+ +++.+|++|+.++.|++|++.+...... ....+.
T Consensus 158 s-p~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------------------------------------~~~~~~ 192 (450)
T 2vdu_B 158 A-EDDTTVIIADKFGDVYSIDINSIPEEKF--------------------------------------------TQEPIL 192 (450)
T ss_dssp C-TTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------------------CCCCSE
T ss_pred c-CCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------------------cceeee
Confidence 9 7899999999999999999976422110 112356
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCceeEE-eccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046871 215 GHKESVYALAMNDS---GNLLVSGGTEKVVRVWDPRTGSKTIK-LRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 215 ~~~~~V~~l~~sp~---g~~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~ 290 (764)
+|...|++++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.|++|++||+.+
T Consensus 193 ~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 193 GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence 78899999999999 99999999999999999999988877 66899999999999 999999999999999999999
Q ss_pred CeeeEEEeee-------------------------cCceEEEEEcCCCCEEEEec-CCCcEEEEeC--CCC---eEEEEe
Q 046871 291 QRCIHSYAVH-------------------------TDSVWALASTPTFSHVYSGG-RDLSLYLTDL--ATR---ESLLLC 339 (764)
Q Consensus 291 ~~~~~~l~~h-------------------------~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~--~~~---~~~~~~ 339 (764)
++++..+..+ ...|.+++|+|++++|++++ .|+.|++|++ .++ ..+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~ 351 (450)
T 2vdu_B 272 GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII 351 (450)
T ss_dssp CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE
T ss_pred CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe
Confidence 9999888743 35689999999999999988 8999999999 555 566666
Q ss_pred ecCCCeEEEEeeCCceEEEe-C-------CCcEEEeeCCC
Q 046871 340 TGEHPILQLALHDDNIWVAT-T-------DSSVHRWPAEG 371 (764)
Q Consensus 340 ~~~~~V~~l~~spd~l~~~s-~-------dg~I~iwd~~~ 371 (764)
.....|.+++|+|++++++. . +..|.+|.+..
T Consensus 352 ~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 352 TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 66689999999998844443 2 44588887754
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1e-28 Score=268.84 Aligned_cols=273 Identities=14% Similarity=0.118 Sum_probs=225.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE-EEEeCCCcEEEecCCCCCeeeeeccccCCceE
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL-VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVT 130 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~ 130 (764)
.++++++.|+.|++||+.+ ++.+..+..|.. +.+++|+|++ .+ ++++.|++|++||+ ..++.+..+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~-~~~~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS--NKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDT-ATNNVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTT--TEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEET-TTTEEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCC--CeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEEC-CCCeEEEEEECCC-Ccc
Confidence 4688899999999999988 667777777654 8999999997 44 67778999999997 5577777776555 899
Q ss_pred EEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcc
Q 046871 131 CLAAAEKNSNIV-ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV 209 (764)
Q Consensus 131 ~l~~~p~~~~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 209 (764)
+++|+ ++++++ ++++.++.|++||+.++. .
T Consensus 78 ~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~------------------------------------------------~ 108 (391)
T 1l0q_A 78 GVAVS-PDGKQVYVTNMASSTLSVIDTTSNT------------------------------------------------V 108 (391)
T ss_dssp EEEEC-TTSSEEEEEETTTTEEEEEETTTTE------------------------------------------------E
T ss_pred ceEEC-CCCCEEEEEECCCCEEEEEECCCCe------------------------------------------------E
Confidence 99999 566665 555677999999998641 1
Q ss_pred ceeccCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEE-EEEeCCCcEEEEe
Q 046871 210 PIAAKGHKESVYALAMNDSGNLL-VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC-LSGSSDSMIRLWD 287 (764)
Q Consensus 210 ~~~~~~~~~~V~~l~~sp~g~~l-~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l-~sgs~Dg~I~iwd 287 (764)
...+. +...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||
T Consensus 109 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 109 AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 11122 34568999999999977 68888999999999999988888765 567999999999987 5778899999999
Q ss_pred CCCCeeeEEEeeecCceEEEEEcCCCCEEEEec---CCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--e-EEEeCC
Q 046871 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG---RDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--I-WVATTD 361 (764)
Q Consensus 288 l~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l-~~~s~d 361 (764)
+++++++..+. +...+.+++|+|++++|++++ .++.|++||+.+++.+..+.....+.+++|+|++ + ++++.|
T Consensus 187 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 187 TVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp TTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred CCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC
Confidence 99999888776 556889999999999999887 6899999999999988888877788999999998 5 455779
Q ss_pred CcEEEeeCCCCCCceeeecCC
Q 046871 362 SSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 362 g~I~iwd~~~~~~~~~~~~~~ 382 (764)
+.|++||+.+++....+..+.
T Consensus 266 ~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 266 NTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEECCCCcEEEEEECCc
Confidence 999999999988887776543
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.5e-28 Score=271.44 Aligned_cols=319 Identities=11% Similarity=0.103 Sum_probs=249.6
Q ss_pred CCCeeEEE---eecccccCCCcEEEEE--------------eCCCcEEEEeCCC--CCCccceeecccccceeEEEEeCC
Q 046871 35 CAGINCLA---VLKSSVSNGVDYLFTG--------------SRDGTLKRWSLAD--DVGSCSATFESHVDWVNDAVLVGD 95 (764)
Q Consensus 35 ~~~V~~l~---~~~~~~S~d~~~L~sg--------------s~Dg~I~iWd~~~--~~~~~~~~l~~h~~~V~~v~~s~d 95 (764)
..++..++ + +|+++.++.. +.++.+.||.++. +....+..+..+ ..+.+++|+|+
T Consensus 60 ~~g~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~ 133 (433)
T 3bws_A 60 NIALVEMAIPVY-----KDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDN 133 (433)
T ss_dssp TEEEEEEEEECC-----CTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSS
T ss_pred CCccEEEEEeec-----cCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCC
Confidence 44566666 5 5666666543 2334335555433 333555555554 34668999997
Q ss_pred C-eEEEEeCCCcEEEecCCCCCeeee-----eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCC
Q 046871 96 N-TLVSCSSDTTLKTWNCSSDGTCIR-----TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 169 (764)
Q Consensus 96 ~-~l~s~s~Dg~V~vWd~~~~~~~~~-----~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~ 169 (764)
+ .+++++.|+.|++||+ .+++... .+.+|...|.+++|+ +++.++++++.|+.|++||+.++
T Consensus 134 ~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~---------- 201 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDI-NSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTL---------- 201 (433)
T ss_dssp SEEEEEBTTSSSEEEEET-TTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTC----------
T ss_pred CeEEEEeCCCCeEEEEEC-CCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCc----------
Confidence 6 5666777889999997 4465555 455788999999997 78999999999999999999763
Q ss_pred cCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC
Q 046871 170 EDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPRT 248 (764)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~ 248 (764)
.....+..|...+.+++|+|+++.++ +++.++.|++||+++
T Consensus 202 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 202 --------------------------------------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp --------------------------------------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred --------------------------------------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 12233456788899999999999885 555899999999999
Q ss_pred CceeEEeccCCcCeEEEEEcCCCCEEEEEe--------CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEE-EEe
Q 046871 249 GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS--------SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHV-YSG 319 (764)
Q Consensus 249 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs--------~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l-~sg 319 (764)
++.+..+..+ ..+.+++|+|+++++++++ .|+.|++||+.+++.+..+ .|...+.+++|+|+++.+ +++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEe
Confidence 9988888754 5599999999999999888 5889999999999887776 466689999999999755 567
Q ss_pred cCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeC---------------CCcEEEeeCCCCCCceeeecCC
Q 046871 320 GRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATT---------------DSSVHRWPAEGRNPQKVFQRGG 382 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~---------------dg~I~iwd~~~~~~~~~~~~~~ 382 (764)
+.|+.|++||+.+++.+..+.+...+.+++|+|++ +++++. ||.|++||+.+++....+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-- 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-- 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--
T ss_pred cCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--
Confidence 89999999999999998888888899999999998 777766 46999999988765544331
Q ss_pred cceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeC-CCcEEEEEcc
Q 046871 383 SFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA-AGSVKLWEIT 448 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~-dG~V~lWdi~ 448 (764)
...+..++|+|||++|++++. ||.|++|++.
T Consensus 400 -----------------------------------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 400 -----------------------------------GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -----------------------------------SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred -----------------------------------CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 234678899999999988875 9999999986
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=273.14 Aligned_cols=286 Identities=12% Similarity=0.119 Sum_probs=229.4
Q ss_pred CccceeecccccceeEEEEeCC---C-eEEEEeCCCcEEEecCCCCCeee-eeccccCCceEEEEEecCCCcEEEEEeCC
Q 046871 74 GSCSATFESHVDWVNDAVLVGD---N-TLVSCSSDTTLKTWNCSSDGTCI-RTLRQHSDYVTCLAAAEKNSNIVASGGLG 148 (764)
Q Consensus 74 ~~~~~~l~~h~~~V~~v~~s~d---~-~l~s~s~Dg~V~vWd~~~~~~~~-~~l~~h~~~V~~l~~~p~~~~~lasg~~d 148 (764)
.+.+..+.+|.+.|++++|+|+ + +|++++.||.|++||+...+..+ ..+.+|...|.+++|+ +++++|++++.|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d 107 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS-DDGSKVFTASCD 107 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC-TTSSEEEEEETT
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC-cCCCEEEEEcCC
Confidence 5667788999999999999998 4 89999999999999986534444 7888999999999999 689999999999
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEE--c
Q 046871 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM--N 226 (764)
Q Consensus 149 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~--s 226 (764)
|.|++||+.++. ......|...|.+++| +
T Consensus 108 g~v~iwd~~~~~-------------------------------------------------~~~~~~~~~~v~~~~~~~~ 138 (368)
T 3mmy_A 108 KTAKMWDLSSNQ-------------------------------------------------AIQIAQHDAPVKTIHWIKA 138 (368)
T ss_dssp SEEEEEETTTTE-------------------------------------------------EEEEEECSSCEEEEEEEEC
T ss_pred CcEEEEEcCCCC-------------------------------------------------ceeeccccCceEEEEEEeC
Confidence 999999998631 1224568899999999 8
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe--eecCce
Q 046871 227 DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA--VHTDSV 304 (764)
Q Consensus 227 p~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~--~h~~~V 304 (764)
+++++|++++.||.|++||+++++.+..+..+. .+.++.+. +..+++++.++.+++|++.......... .+...+
T Consensus 139 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 215 (368)
T 3mmy_A 139 PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH 215 (368)
T ss_dssp SSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE
T ss_pred CCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCC
Confidence 999999999999999999999999999888664 56666666 4588899999999999998765433222 233456
Q ss_pred EEEEEcCCCCE----EEEecCCCcEEEEeCCCC---eEEEEeecC-C------------CeEEEEeeCCc--eEEEeCCC
Q 046871 305 WALASTPTFSH----VYSGGRDLSLYLTDLATR---ESLLLCTGE-H------------PILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 305 ~~l~~spd~~~----l~sgs~Dg~I~iwd~~~~---~~~~~~~~~-~------------~V~~l~~spd~--l~~~s~dg 362 (764)
.++++.++... +++++.||.|++||+... ..+..+... . +|.+++|+|++ +++++.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 66666555444 999999999999999876 333343322 2 69999999998 99999999
Q ss_pred cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcE
Q 046871 363 SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSV 442 (764)
Q Consensus 363 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V 442 (764)
.|++||+.++++...+..+ ...|..++|+|||++|++++.|+..
T Consensus 296 ~i~iwd~~~~~~~~~~~~~------------------------------------~~~v~~~~~s~~g~~l~~~s~d~~~ 339 (368)
T 3mmy_A 296 RFSFWDKDARTKLKTSEQL------------------------------------DQPISACCFNHNGNIFAYASSYDWS 339 (368)
T ss_dssp CEEEEETTTTEEEEECCCC------------------------------------SSCEEEEEECTTSSCEEEEECCCST
T ss_pred eEEEEECCCCcEEEEecCC------------------------------------CCCceEEEECCCCCeEEEEeccccc
Confidence 9999999987655444321 3357889999999999999999866
Q ss_pred EEEEcc
Q 046871 443 KLWEIT 448 (764)
Q Consensus 443 ~lWdi~ 448 (764)
+.|++-
T Consensus 340 ~~~~~~ 345 (368)
T 3mmy_A 340 KGHEFY 345 (368)
T ss_dssp TCGGGC
T ss_pred cccccc
Confidence 555543
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=276.78 Aligned_cols=264 Identities=10% Similarity=0.057 Sum_probs=208.8
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCC--------CCeee
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS--------DGTCI 119 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~--------~~~~~ 119 (764)
+.+++.+|++|+.||+|++||+.+ ++.+..+. ...|.++.|+|+ +++++.|++|++|+... .+..+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~--~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKD--SKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESS--SSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCC--CcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 457889999999999999999988 55566665 567888889888 99999999999997531 22223
Q ss_pred eec-cccCCceEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 120 RTL-RQHSDYVTCLAAAEK--NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 120 ~~l-~~h~~~V~~l~~~p~--~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
..+ ..|.+.|.+++|+ + +++++++++.|+.|++||++++...
T Consensus 118 ~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~~---------------------------------- 162 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQY---------------------------------- 162 (343)
T ss_dssp EEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCEE----------------------------------
T ss_pred EEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcEE----------------------------------
Confidence 333 3577899999999 6 8899999999999999999864210
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEecc-CCcCeEEEEEcCCCCEE
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT-IKLRG-HTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~-~~l~~-h~~~V~~l~~spdg~~l 274 (764)
......+...|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.+.|++++|+|++.+|
T Consensus 163 -------------~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l 229 (343)
T 3lrv_A 163 -------------IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWM 229 (343)
T ss_dssp -------------EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred -------------EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEE
Confidence 0112335567999999999999999999999999999999988 78888 99999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeEEEee---ecCceE--EEEEcCCCCEEEEecC-CCcEEEEeCCCCeEEEEeecCCCeEEE
Q 046871 275 LSGSSDSMIRLWDLGQQRCIHSYAV---HTDSVW--ALASTPTFSHVYSGGR-DLSLYLTDLATRESLLLCTGEHPILQL 348 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~~~~~~l~~---h~~~V~--~l~~spd~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~V~~l 348 (764)
++++ |++|++||+++++++..+.. |...+. +++|+|++++|++++. |+.|++|++......... .++..+
T Consensus 230 ~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~ 305 (343)
T 3lrv_A 230 VVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESAL 305 (343)
T ss_dssp EEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEEC
T ss_pred EEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeE
Confidence 9999 55999999999877655543 334443 6999999999999888 999999999765433222 567788
Q ss_pred EeeC---Cc--eEEEeCCCcEEEeeC
Q 046871 349 ALHD---DN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 349 ~~sp---d~--l~~~s~dg~I~iwd~ 369 (764)
+|.+ +. +++++.|+.+.++-.
T Consensus 306 ~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 306 CLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp CC----CCCCEEEEEEETTEEEEEEE
T ss_pred ecCccccccceeEEEecCCceEEEEe
Confidence 8887 54 888999999988754
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.1e-29 Score=280.68 Aligned_cols=251 Identities=17% Similarity=0.223 Sum_probs=216.2
Q ss_pred CCCCCeeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCC--------CCCccceeecccccceeEEEEeCCC--eEEEE
Q 046871 33 KHCAGINCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLAD--------DVGSCSATFESHVDWVNDAVLVGDN--TLVSC 101 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~--------~~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~ 101 (764)
+|.+.|++++| +|+ +.+|++++.||.|++||+.+ +.......+.+|...|.+++|+|++ .|+++
T Consensus 126 ~h~~~v~~l~~-----~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 126 NHEGEVNRARY-----MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EESSCCSEEEE-----ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred cCCCcEEEEEE-----CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 69999999999 676 78999999999999999975 2356678889999999999999984 89999
Q ss_pred eCCCcEEEecCCCCCe------eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 102 SSDTTLKTWNCSSDGT------CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 102 s~Dg~V~vWd~~~~~~------~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
+.||+|++|++..... ....+..|...|.+++|+|.++.+|++++.|+.|++||+++...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------- 266 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence 9999999999854221 14566789999999999966889999999999999999986410
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRT-GSKTI 253 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~-~~~~~ 253 (764)
......+..|...|.+++|+|++. +|++|+.||.|++||+++ .+.+.
T Consensus 267 -------------------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~ 315 (430)
T 2xyi_A 267 -------------------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315 (430)
T ss_dssp -------------------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred -------------------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE
Confidence 012233567889999999999887 788999999999999998 56788
Q ss_pred EeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--------------CeeeEEEeeecCceEEEEEcCCCC-EEE
Q 046871 254 KLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQ--------------QRCIHSYAVHTDSVWALASTPTFS-HVY 317 (764)
Q Consensus 254 ~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~--------------~~~~~~l~~h~~~V~~l~~spd~~-~l~ 317 (764)
.+..|...|.+++|+|+++ +|++++.|+.|++||+.. .+.+..+.+|...|++++|+|+++ +|+
T Consensus 316 ~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 8999999999999999985 699999999999999976 367778889999999999999999 899
Q ss_pred EecCCCcEEEEeCCCC
Q 046871 318 SGGRDLSLYLTDLATR 333 (764)
Q Consensus 318 sgs~Dg~I~iwd~~~~ 333 (764)
+++.||.|++|++...
T Consensus 396 s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 396 SVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEETTSEEEEEEECHH
T ss_pred EEECCCCEEEeEcccc
Confidence 9999999999998653
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-29 Score=272.14 Aligned_cols=273 Identities=8% Similarity=0.093 Sum_probs=210.1
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE-EEEeCCCcEEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL-VSCSSDTTLKT 109 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l-~s~s~Dg~V~v 109 (764)
.+|...|+|++| ||||++|++|+.|| ++|||+++ ........ ...+..+.+.+++ .+ ++++.|++|++
T Consensus 16 ~~h~~~V~~v~f-----s~dg~~la~g~~~~-~~iw~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 16 NHVSNPVTDYEF-----NQDQSCLILSTLKS-FEIYNVHP--VAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ---CCCCCEEEE-----CTTSSEEEEECSSE-EEEEEETT--EEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred ccCCCceEEEEE-----CCCCCEEEEEcCCE-EEEEecCC--cceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 479999999999 89999999998775 78999886 33333322 2357778888764 44 67788899999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCC-CCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA-LAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
||+ ..++++..+. |...|.+++++ + +.++++ .|+.|++||+.+. ...
T Consensus 86 Wd~-~~~~~~~~~~-~~~~v~~v~~~-~--~~~~~~-~~~~i~i~d~~~~~~~~-------------------------- 133 (355)
T 3vu4_A 86 WDD-VKKQDVSRIK-VDAPVKDLFLS-R--EFIVVS-YGDVISVFKFGNPWKRI-------------------------- 133 (355)
T ss_dssp EET-TTTEEEEEEE-CSSCEEEEEEC-S--SEEEEE-ETTEEEEEESSTTCCBS--------------------------
T ss_pred EEC-CCCcEEEEEE-CCCceEEEEEc-C--CEEEEE-EcCEEEEEECCCCceee--------------------------
Confidence 997 5577777776 67799999998 3 344444 3788999999864 111
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCc----------------
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS--GGTEKVVRVWDPRTGS---------------- 250 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s--gs~dg~I~iwd~~~~~---------------- 250 (764)
..+.. ....+++++ .++++ |+.||.|++||+++++
T Consensus 134 ----------------------~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p 186 (355)
T 3vu4_A 134 ----------------------TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG 186 (355)
T ss_dssp ----------------------SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred ----------------------EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCc
Confidence 00111 333455666 56665 6889999999999865
Q ss_pred eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeeeEEEe-e-ecCceEEEEEcCCCCEEEEecCCCcEEE
Q 046871 251 KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSM-IRLWDLGQQRCIHSYA-V-HTDSVWALASTPTFSHVYSGGRDLSLYL 327 (764)
Q Consensus 251 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~-I~iwdl~~~~~~~~l~-~-h~~~V~~l~~spd~~~l~sgs~Dg~I~i 327 (764)
.+..+.+|.+.|++++|+|+|++|++|+.|++ |++||+++++++.++. + |...|++++|+|++++|++++.|++|++
T Consensus 187 ~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~i 266 (355)
T 3vu4_A 187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHV 266 (355)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEE
T ss_pred ccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEE
Confidence 27788999999999999999999999999998 9999999999999998 5 9999999999999999999999999999
Q ss_pred EeCCCCeEEE--E--------------------ee--cCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCC
Q 046871 328 TDLATRESLL--L--------------------CT--GEHPILQLALHDDN--IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 328 wd~~~~~~~~--~--------------------~~--~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~ 373 (764)
||+..+.... . +. ...+...++|++++ +++++.||.+++|++..+.
T Consensus 267 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 267 FEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9997653111 0 00 11234678999998 8889999999999987544
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=307.44 Aligned_cols=250 Identities=20% Similarity=0.242 Sum_probs=218.0
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC--C-eEEEEeCCCcEE
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD--N-TLVSCSSDTTLK 108 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d--~-~l~s~s~Dg~V~ 108 (764)
.||.+.|+|++| +|++++|++|+.||.|++||+..+.......+.+|.+.|++++|+++ + .|++++.||+|+
T Consensus 6 ~gH~~~V~~l~~-----s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 6 NAHNELIHDAVL-----DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp --CCCCEEEECC-----CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred ccCcceeEEEEE-----CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 499999999999 79999999999999999999986557788899999999999999876 5 899999999999
Q ss_pred EecCCCCCe--eeeeccccCCceEEEEEecCC--CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 109 TWNCSSDGT--CIRTLRQHSDYVTCLAAAEKN--SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 109 vWd~~~~~~--~~~~l~~h~~~V~~l~~~p~~--~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
+||+.. +. ....+..|...|.+++|+ ++ +.++++|+.||.|++||+.+...
T Consensus 81 vwd~~~-~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~----------------------- 135 (753)
T 3jro_A 81 IWKEEN-GRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGT----------------------- 135 (753)
T ss_dssp EEEEET-TEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSC-----------------------
T ss_pred EEECCC-CcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCC-----------------------
Confidence 999843 44 677788899999999999 56 89999999999999999986421
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-------------CCCEEEEEeCCCeEEEEeCCCC--
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-------------SGNLLVSGGTEKVVRVWDPRTG-- 249 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-------------~g~~l~sgs~dg~I~iwd~~~~-- 249 (764)
.......+|...|.+++|+| ++.++++|+.||.|++||++++
T Consensus 136 -----------------------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 136 -----------------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp -----------------------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred -----------------------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 11223567889999999999 5899999999999999999887
Q ss_pred --ceeEEeccCCcCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCe-----eeEEEeeecCceEEEEEcCCCCEEEEe
Q 046871 250 --SKTIKLRGHTDNIRSLLLDST---GRYCLSGSSDSMIRLWDLGQQR-----CIHSYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 250 --~~~~~l~~h~~~V~~l~~spd---g~~l~sgs~Dg~I~iwdl~~~~-----~~~~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
.....+.+|...|.+++|+|+ +++|++|+.||.|++||+.++. .+.....|...|++++|+|++++|+++
T Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 193 TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 456678899999999999999 8999999999999999998764 333445688899999999999999999
Q ss_pred cCCCcEEEEeCCCCe
Q 046871 320 GRDLSLYLTDLATRE 334 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~ 334 (764)
+.||.|++|++..+.
T Consensus 273 s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 273 GGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSCEECCBCCSSS
T ss_pred cCCCEEEEEecCCCC
Confidence 999999999998654
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6.2e-29 Score=274.75 Aligned_cols=253 Identities=19% Similarity=0.282 Sum_probs=211.8
Q ss_pred eeecccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCC---------CeeeeeccccCCceEEEEEecCCCcEEEEEe
Q 046871 78 ATFESHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSD---------GTCIRTLRQHSDYVTCLAAAEKNSNIVASGG 146 (764)
Q Consensus 78 ~~l~~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~---------~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~ 146 (764)
.....|.+.|++++|+|+ + +|++++.||.|++|++... ......+.+|...|.+++|+|.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 4 7899999999999998531 4567788899999999999954444999999
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc
Q 046871 147 LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226 (764)
Q Consensus 147 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s 226 (764)
.||.|++||+......... ......+..|...|.+++|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~-----------------------------------------~~~~~~~~~h~~~v~~v~~~ 240 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRV-----------------------------------------IDAKNIFTGHTAVVEDVAWH 240 (430)
T ss_dssp TTSCEEEEETTSCCBGGGE-----------------------------------------EECSEEECCCSSCEEEEEEC
T ss_pred CCCeEEEEeCCCCCCCCce-----------------------------------------eccceeecCCCCCEeeeEEe
Confidence 9999999999863110000 00123456889999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCC---ceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC-CeeeEEEeee
Q 046871 227 D-SGNLLVSGGTEKVVRVWDPRTG---SKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQ-QRCIHSYAVH 300 (764)
Q Consensus 227 p-~g~~l~sgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~-~~~~~~l~~h 300 (764)
| ++.+|++++.||.|++||++++ +.+..+..|...|++++|+|++. +|++|+.||+|++||+++ ..++..+..|
T Consensus 241 p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 9 7889999999999999999987 57778889999999999999987 688999999999999988 6778999999
Q ss_pred cCceEEEEEcCCCC-EEEEecCCCcEEEEeCCC--------------CeEEEEee-cCCCeEEEEeeCCc---eEEEeCC
Q 046871 301 TDSVWALASTPTFS-HVYSGGRDLSLYLTDLAT--------------RESLLLCT-GEHPILQLALHDDN---IWVATTD 361 (764)
Q Consensus 301 ~~~V~~l~~spd~~-~l~sgs~Dg~I~iwd~~~--------------~~~~~~~~-~~~~V~~l~~spd~---l~~~s~d 361 (764)
...|++++|+|+++ +|++++.||.|++||+.. .+.+.... +...|.+++|+|++ +++++.|
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence 99999999999985 688999999999999986 23344333 56789999999997 7888899
Q ss_pred CcEEEeeCCC
Q 046871 362 SSVHRWPAEG 371 (764)
Q Consensus 362 g~I~iwd~~~ 371 (764)
+.|++|++..
T Consensus 401 g~i~iw~~~~ 410 (430)
T 2xyi_A 401 NIMQVWQMAE 410 (430)
T ss_dssp SEEEEEEECH
T ss_pred CCEEEeEccc
Confidence 9999999874
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.3e-29 Score=268.54 Aligned_cols=307 Identities=11% Similarity=0.035 Sum_probs=210.7
Q ss_pred EEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEE-E
Q 046871 66 RWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIV-A 143 (764)
Q Consensus 66 iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~l-a 143 (764)
||++.+ ...+..+..|...|++++|+||+ +|++|+.+ .+++|++. ........ +...+..+++. .+++.+ +
T Consensus 3 i~s~~~--~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~-~~~~~~~~--~~~~~~~~~~~-~~~~~~~~ 75 (355)
T 3vu4_A 3 LGSMIT--RNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVH-PVAHIMSQ--EMRHLSKVRML-HRTNYVAF 75 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSS-EEEEEEET-TEEEEEEE--ECSCCCEEEEC-TTSSEEEE
T ss_pred cccccc--cCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecC-Ccceeeee--ecCCeEEEEEc-CCCCEEEE
Confidence 455555 44566778999999999999998 56666555 58999973 34443332 22347778888 445555 6
Q ss_pred EEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEE
Q 046871 144 SGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYAL 223 (764)
Q Consensus 144 sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l 223 (764)
+++.|+.|++||+.++. ....+ .+...|.++
T Consensus 76 ~~~~d~~v~iWd~~~~~------------------------------------------------~~~~~-~~~~~v~~v 106 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQ------------------------------------------------DVSRI-KVDAPVKDL 106 (355)
T ss_dssp ECSSTTEEEEEETTTTE------------------------------------------------EEEEE-ECSSCEEEE
T ss_pred EECCccEEEEEECCCCc------------------------------------------------EEEEE-ECCCceEEE
Confidence 78888999999998642 11222 256689999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCcCeEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCe--------
Q 046871 224 AMNDSGNLLVSGGTEKVVRVWDPRTG-SKTIKLRGHTDNIRSLLLDSTGRYCLS--GSSDSMIRLWDLGQQR-------- 292 (764)
Q Consensus 224 ~~sp~g~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s--gs~Dg~I~iwdl~~~~-------- 292 (764)
+++++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .++++ |+.||.|++||+.+++
T Consensus 107 ~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 107 FLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp EECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------
T ss_pred EEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 998763 4444 4789999999988 77666654 445566777 56665 6889999999998865
Q ss_pred --------eeEEEeeecCceEEEEEcCCCCEEEEecCCCc-EEEEeCCCCeEEEEee---cCCCeEEEEeeCCc--eEEE
Q 046871 293 --------CIHSYAVHTDSVWALASTPTFSHVYSGGRDLS-LYLTDLATRESLLLCT---GEHPILQLALHDDN--IWVA 358 (764)
Q Consensus 293 --------~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~-I~iwd~~~~~~~~~~~---~~~~V~~l~~spd~--l~~~ 358 (764)
++..+.+|.+.|++++|+|++++|++|+.|++ |++||+++++.+..+. |..+|.+++|+|++ |+++
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence 27889999999999999999999999999998 9999999999998887 78899999999998 8999
Q ss_pred eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCcccc--CCCCceEeEEecCCcEEEEe
Q 046871 359 TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIP--GIPGIVQHEILNNRRHVLTK 436 (764)
Q Consensus 359 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~--g~~~i~~~~~s~dg~~l~t~ 436 (764)
+.|++|++||+..........-.. + +.+... .. .+......++ .......++|++|+++|+++
T Consensus 259 s~d~~v~iw~~~~~~~~~~~~~~~------~-~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQDNKRHALKG------W-INMKYF--QS------EWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp ETTCEEEEEESSCCSCCCSEETTT------T-EECCCC--CC------SSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred ECCCEEEEEEccCCCCcccccccc------e-eecccc--cc------ccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence 999999999998754322111000 0 000000 00 0000000111 12234668999999999999
Q ss_pred eCCCcEEEEEccccE
Q 046871 437 DAAGSVKLWEITRGV 451 (764)
Q Consensus 437 s~dG~V~lWdi~tg~ 451 (764)
+.||.+++|++..+.
T Consensus 324 ~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 324 PHTRMIETFKVVFDD 338 (355)
T ss_dssp TTTTEEEEEEEEEET
T ss_pred eCCCeEEEEEEEcCC
Confidence 999999999987654
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=303.72 Aligned_cols=251 Identities=21% Similarity=0.251 Sum_probs=212.3
Q ss_pred ceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC-CCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEE
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS-DGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFI 153 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~-~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~i 153 (764)
+..+.+|.+.|++++|+|++ +|++|+.||+|+|||+.. .......+.+|.+.|.+++|+++ ++++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999999997 899999999999999742 34677788999999999999843 2899999999999999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC--CCE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS--GNL 231 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~--g~~ 231 (764)
||+.++. .........|...|++++|+|+ +++
T Consensus 82 wd~~~~~----------------------------------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~ 115 (753)
T 3jro_A 82 WKEENGR----------------------------------------------WSQIAVHAVHSASVNSVQWAPHEYGPL 115 (753)
T ss_dssp EEEETTE----------------------------------------------EEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred EECCCCc----------------------------------------------ccccccccCCCCCeEEEEECCCCCCCE
Confidence 9987631 0123446778999999999999 999
Q ss_pred EEEEeCCCeEEEEeCCCC--ceeEEeccCCcCeEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCC----e
Q 046871 232 LVSGGTEKVVRVWDPRTG--SKTIKLRGHTDNIRSLLLDS-------------TGRYCLSGSSDSMIRLWDLGQQ----R 292 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~sp-------------dg~~l~sgs~Dg~I~iwdl~~~----~ 292 (764)
+++|+.||.|++||++++ .....+.+|...|.+++|+| ++.+|++|+.||+|++||++++ .
T Consensus 116 l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~ 195 (753)
T 3jro_A 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (753)
T ss_dssp EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE
T ss_pred EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce
Confidence 999999999999999887 34556778999999999999 5899999999999999999876 6
Q ss_pred eeEEEeeecCceEEEEEcCC---CCEEEEecCCCcEEEEeCCCCeE------EEEeecCCCeEEEEeeCCc--eEEEeCC
Q 046871 293 CIHSYAVHTDSVWALASTPT---FSHVYSGGRDLSLYLTDLATRES------LLLCTGEHPILQLALHDDN--IWVATTD 361 (764)
Q Consensus 293 ~~~~l~~h~~~V~~l~~spd---~~~l~sgs~Dg~I~iwd~~~~~~------~~~~~~~~~V~~l~~spd~--l~~~s~d 361 (764)
+..++.+|...|++++|+|+ +.+|++++.||.|++||+.++.. .....+...|++++|+|++ +++++.|
T Consensus 196 ~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 67788899999999999999 89999999999999999988642 1222357789999999999 8899999
Q ss_pred CcEEEeeCCCCC
Q 046871 362 SSVHRWPAEGRN 373 (764)
Q Consensus 362 g~I~iwd~~~~~ 373 (764)
|.|++|++....
T Consensus 276 g~I~vwd~~~~~ 287 (753)
T 3jro_A 276 NKVTLWKENLEG 287 (753)
T ss_dssp SCEECCBCCSSS
T ss_pred CEEEEEecCCCC
Confidence 999999998643
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=274.10 Aligned_cols=280 Identities=11% Similarity=0.105 Sum_probs=221.4
Q ss_pred ccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe---eeeecc-------------------------------------
Q 046871 84 VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT---CIRTLR------------------------------------- 123 (764)
Q Consensus 84 ~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~---~~~~l~------------------------------------- 123 (764)
..++.+++|++++.+++++.++.|++||+. +++ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 357899999999866666678899999974 454 333333
Q ss_pred -----------------ccCCceEEEEEecCCCcEE-EEEeCCCeEEEEeCC--CCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 124 -----------------QHSDYVTCLAAAEKNSNIV-ASGGLGAEVFIWDIE--AALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 124 -----------------~h~~~V~~l~~~p~~~~~l-asg~~dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
.|.+.|.+++|+ +++.+| ++++.|+.|++||+. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~----------------------- 138 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKN----------------------- 138 (450)
T ss_dssp -----------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSS-----------------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCc-----------------------
Confidence 234479999999 677775 899999999999997 421
Q ss_pred CcccceeecCCCCcccccccCCCCccceec--cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----Eecc
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAA--KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI----KLRG 257 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~----~l~~ 257 (764)
....+ ..|...|++++|+|++++|++|+.+|.|++|++.+++... .+.+
T Consensus 139 -------------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 193 (450)
T 2vdu_B 139 -------------------------VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG 193 (450)
T ss_dssp -------------------------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE
T ss_pred -------------------------eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec
Confidence 11112 2567889999999999999999999999999998887554 7788
Q ss_pred CCcCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCeeeEE-EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 258 HTDNIRSLLLDST---GRYCLSGSSDSMIRLWDLGQQRCIHS-YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 258 h~~~V~~l~~spd---g~~l~sgs~Dg~I~iwdl~~~~~~~~-l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
|...|.+++|+|+ +++|++|+.|++|++||+.+++++.. +.+|...|++++|+ ++++|++++.|+.|++||+.++
T Consensus 194 h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 194 HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999 99999999999999999999998887 55899999999999 9999999999999999999999
Q ss_pred eEEEEeec--------------------------CCCeEEEEeeCCc--eEEEe-CCCcEEEeeC--CCCCCceeeecCC
Q 046871 334 ESLLLCTG--------------------------EHPILQLALHDDN--IWVAT-TDSSVHRWPA--EGRNPQKVFQRGG 382 (764)
Q Consensus 334 ~~~~~~~~--------------------------~~~V~~l~~spd~--l~~~s-~dg~I~iwd~--~~~~~~~~~~~~~ 382 (764)
+.+..+.. ...|.+++|+|++ +++++ .++.|++|++ ..+.....+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~--- 349 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ--- 349 (450)
T ss_dssp CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE---
T ss_pred cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeecc---
Confidence 88776642 2468999999998 77777 7999999999 4332111111
Q ss_pred cceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeC------CCcEEEEEcc
Q 046871 383 SFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA------AGSVKLWEIT 448 (764)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~------dG~V~lWdi~ 448 (764)
.+.++..+..++|+|++.++++++. +..|.+|.+.
T Consensus 350 -------------------------------~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 350 -------------------------------IITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp -------------------------------EEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred -------------------------------EeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 1223345788999996544444443 5568888765
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.9e-28 Score=265.23 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=229.1
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccce-----eecccccceeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSA-----TFESHVDWVNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~-----~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
..+.+++| +|++.++++++.|+.|++||+.+ ++... .+.+|...|.+++|++++ .+++++.|+.|++
T Consensus 123 ~~~~~~~~-----s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 123 FQPKSVRF-----IDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp SCBCCCEE-----SSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred CCceEEEE-----eCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 34567787 78788888888899999999988 44444 456889999999999887 7888999999999
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIV-ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
||+ ..++.+..+..|...+.+++|+ +++..+ ++++.|+.|++||+.++..
T Consensus 196 ~d~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~--------------------------- 246 (433)
T 3bws_A 196 FDL-KTLAYKATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLE--------------------------- 246 (433)
T ss_dssp EET-TTCCEEEEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEE---------------------------
T ss_pred EEC-CCceEEEEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcE---------------------------
Confidence 997 4577788888899999999999 566655 5666899999999976421
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe--------CCCeEEEEeCCCCceeEEeccCCc
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG--------TEKVVRVWDPRTGSKTIKLRGHTD 260 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs--------~dg~I~iwd~~~~~~~~~l~~h~~ 260 (764)
...+. ....+.+++|+|+++++++++ .|+.|++||+++++.+..+ .|..
T Consensus 247 ---------------------~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~ 303 (433)
T 3bws_A 247 ---------------------IRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPG 303 (433)
T ss_dssp ---------------------EEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEE
T ss_pred ---------------------EEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCC
Confidence 11122 234589999999999999888 5889999999998877665 4667
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC---------------CCc
Q 046871 261 NIRSLLLDSTGRYC-LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR---------------DLS 324 (764)
Q Consensus 261 ~V~~l~~spdg~~l-~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~---------------Dg~ 324 (764)
.+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+++++++++. ||.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 89999999999765 666899999999999999888876 7778999999999999988776 579
Q ss_pred EEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeC-CCcEEEeeCCC
Q 046871 325 LYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATT-DSSVHRWPAEG 371 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~-dg~I~iwd~~~ 371 (764)
|++||+.+++.+..+.....+.+++|+|++ +++++. |+.|++|+++.
T Consensus 383 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 383 VYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999999999999888888889999999998 666665 99999999864
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-29 Score=273.27 Aligned_cols=260 Identities=9% Similarity=0.065 Sum_probs=204.6
Q ss_pred cccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 046871 81 ESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 81 ~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~ 159 (764)
+.-..+|.+++|+||| ++++++.|++|+ |. +..+.+.+|...|.+++|+ |++ .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~----~~~~~l~gh~~~v~~V~Fs-Pdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QP----KYAKDINCNSKNLFHVKEF-PLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EE----CCCSCCSSBGGGTEEEEEE-CCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cc----cccceecCCCccEEEEEEC-CCC-------CcceEEEEeCCCc
Confidence 3456899999999998 899999999999 63 2234557999999999999 555 3444444443221
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
... ...|...|++++|+|+|.+||+++.||
T Consensus 78 -------------------------------------------------~~~-~~~~~~~V~~vawSPdG~~LAs~s~dg 107 (588)
T 2j04_A 78 -------------------------------------------------GLL-NSQPVCYPRVCKPSPIDDWMAVLSNNG 107 (588)
T ss_dssp -------------------------------------------------CSS-TTSCSCCEEEEEECSSSSCEEEEETTS
T ss_pred -------------------------------------------------eEe-ecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 001 114478899999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCc-----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-------eeEEE----eeecCc
Q 046871 240 VVRVWDPRTGSKTIKLRGHTD-----NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-------CIHSY----AVHTDS 303 (764)
Q Consensus 240 ~I~iwd~~~~~~~~~l~~h~~-----~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-------~~~~l----~~h~~~ 303 (764)
.|++||... ++..+. |.. .|.+++|||||++|++|+.||+|++||+.++. .+.++ .+|.+.
T Consensus 108 ~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~ 184 (588)
T 2j04_A 108 NVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW 184 (588)
T ss_dssp CEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC
T ss_pred cEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccccc
Confidence 999999544 666667 665 49999999999999999999999999998875 36776 567789
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE---EEe--ecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCcee
Q 046871 304 VWALASTPTFSHVYSGGRDLSLYLTDLATRESL---LLC--TGEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKV 377 (764)
Q Consensus 304 V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~---~~~--~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~ 377 (764)
|.+++|+|+| +++++.|+.|++||+.++... ..+ .+...|.+++|+ +. +++++ ++.|++||+.+++....
T Consensus 185 V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 185 VTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSL 260 (588)
T ss_dssp EEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEE
T ss_pred EEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEE
Confidence 9999999999 888899999999999887732 344 356789999999 45 66665 79999999987654222
Q ss_pred eecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEE--ecCCcEEEEeeCCCcEEEEEcc
Q 046871 378 FQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEI--LNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 378 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~--s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
..+ +...+..++| +||+..|+++++||+ ++|...
T Consensus 261 ~~g------------------------------------h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 261 KTG------------------------------------SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECS------------------------------------CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EcC------------------------------------CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 112 1233566788 889999999999999 999987
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.6e-29 Score=274.21 Aligned_cols=257 Identities=14% Similarity=0.072 Sum_probs=178.1
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCC---ccceeecccccceeEEEEeC--------CC-eEEEEeCCCcEEEecCCCCC
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVG---SCSATFESHVDWVNDAVLVG--------DN-TLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~---~~~~~l~~h~~~V~~v~~s~--------d~-~l~s~s~Dg~V~vWd~~~~~ 116 (764)
++++.+|++|+.|++|+|||+.+++. .....+.+|.+.|++++|+| |+ +|++++.|++|+|||+ ..+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~-~~~ 176 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL-TDE 176 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE-ETT
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC-CCC
Confidence 56778999999999999999987432 22345789999999999997 55 8999999999999998 446
Q ss_pred eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
.+...+..|...|.+++|+|.+..+|++++.|++|++||+.++................
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------------- 235 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------------- 235 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC---------------------
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------------
Confidence 66777778999999999996566799999999999999998764432211110000000
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC------
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMN-DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS------ 269 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s-p~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp------ 269 (764)
................+|...+.++.|+ ++++.|++++.|+.+++||+..++....+..|...+..+.+.+
T Consensus 236 --~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 236 --LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp --SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred --EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence 0000000001112245788889999987 7999999999999999999998887777766655554443332
Q ss_pred --------------CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 270 --------------TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 270 --------------dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
++.++++|+.||+|++||+.+++++..+..|..+|++++|+|||++|++++.+| +.+|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 334677888999999999999999999999999999999999999999998766 555554
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.1e-27 Score=255.45 Aligned_cols=270 Identities=13% Similarity=0.125 Sum_probs=222.2
Q ss_pred eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIV-ASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
.+++++.|+.|++||+ ..++++..+..|. .+.+++|+ +++.++ ++++.|+.|++||+.++.
T Consensus 4 l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~--------------- 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNN--------------- 65 (391)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTE---------------
T ss_pred EEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEEC-CCCCEEEEECCCCCeEEEEECCCCe---------------
Confidence 5788899999999997 5578888887665 48999999 566655 778799999999997642
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEKVVRVWDPRTGSKTIK 254 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg~I~iwd~~~~~~~~~ 254 (764)
....+.. ...+.+++|+|++++|++ ++.++.|++||+.+++.+..
T Consensus 66 ---------------------------------~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 66 ---------------------------------VIATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp ---------------------------------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------EEEEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 1122222 338999999999998754 55679999999999998888
Q ss_pred eccCCcCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEE-EEecCCCcEEEEeCCC
Q 046871 255 LRGHTDNIRSLLLDSTGRYC-LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHV-YSGGRDLSLYLTDLAT 332 (764)
Q Consensus 255 l~~h~~~V~~l~~spdg~~l-~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l-~sgs~Dg~I~iwd~~~ 332 (764)
+.. ...+.+++|+|++++| ++++.|+.|++||+.+++.+..+..| ..+.+++|+|+++++ ++++.|+.|++||+++
T Consensus 112 ~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 112 VKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 774 4578999999999987 68888999999999999999888765 456999999999988 5778899999999999
Q ss_pred CeEEEEeecCCCeEEEEeeCCc--eEEEe---CCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccC
Q 046871 333 RESLLLCTGEHPILQLALHDDN--IWVAT---TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 333 ~~~~~~~~~~~~V~~l~~spd~--l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
++....+.+...+.+++|+|++ +++++ .++.|++||+.+++....+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------------------------- 242 (391)
T 1l0q_A 190 NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--------------------------- 242 (391)
T ss_dssp TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---------------------------
T ss_pred CeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---------------------------
Confidence 9998888888889999999998 77776 689999999988765444332
Q ss_pred CCCCCccccCCCCceEeEEecCCcEE-EEeeCCCcEEEEEccccEEeeecC
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHV-LTKDAAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l-~t~s~dG~V~lWdi~tg~~i~~~~ 457 (764)
+..+..++|++|+++| ++++.|+.|++||+.++++++.+.
T Consensus 243 ----------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 243 ----------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ----------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ----------CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 2235678899999987 677889999999999999998873
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=263.32 Aligned_cols=267 Identities=9% Similarity=0.039 Sum_probs=203.0
Q ss_pred CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
..+++|+.||+|++||+ ..++.+..+. ...|.++.|+ ++ +++++.|+.|++|+.....
T Consensus 49 ~~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~-~~---~~s~s~D~~i~~w~~~~~~--------------- 106 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEH-PA---IISRGPCNRLLLLYPGNQI--------------- 106 (343)
T ss_dssp EEEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCC-CS---EEEECSTTEEEEEETTTEE---------------
T ss_pred CEEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeC-Cc---eEEecCCCeEEEEEccCce---------------
Confidence 38999999999999998 4566666655 4567788888 33 9999999999999987421
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND--SGNLLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp--~g~~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
.+++.............|.+.|.+++|+| +++++++|+.||.|++||+++++.+.
T Consensus 107 -----------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 163 (343)
T 3lrv_A 107 -----------------------TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI 163 (343)
T ss_dssp -----------------------EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE
T ss_pred -----------------------EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 11111111111222346778899999999 99999999999999999999998877
Q ss_pred Eec-cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeee-EEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 046871 254 KLR-GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI-HSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 254 ~l~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~-~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
... .|...|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.+.|++++|+|++.+|++++ |+.|++||+
T Consensus 164 ~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 664 35558999999999999999999999999999999988 88888 999999999999999999999 559999999
Q ss_pred CCCeEEEEee----cCCCe--EEEEeeCCc--eEEEeC-CCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCC
Q 046871 331 ATRESLLLCT----GEHPI--LQLALHDDN--IWVATT-DSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGS 401 (764)
Q Consensus 331 ~~~~~~~~~~----~~~~V--~~l~~spd~--l~~~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 401 (764)
++++.+..+. +...+ .+++|+|++ +++++. |+.|++|++.........
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----------------------- 299 (343)
T 3lrv_A 243 RKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----------------------- 299 (343)
T ss_dssp TSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----------------------
T ss_pred CCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----------------------
Confidence 9887654433 12233 469999999 777777 999999999765432211
Q ss_pred CCcccCCCCCCccccCCCCceEeEEec---CCcEEEEeeCCCcEEEEEcc
Q 046871 402 TPVSSRFKEPNFTIPGIPGIVQHEILN---NRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 402 ~~~~~~~~~~~~~i~g~~~i~~~~~s~---dg~~l~t~s~dG~V~lWdi~ 448 (764)
..+..+.|.+ +.+.+++++.||.+.++-..
T Consensus 300 -----------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 300 -----------------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp -----------------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred -----------------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 0122333444 67788888888888887543
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.8e-27 Score=243.37 Aligned_cols=280 Identities=13% Similarity=0.080 Sum_probs=207.0
Q ss_pred CCeeEEEeecccccCCC--cEEEEEeCCCcEEEEeCCCC-CCccceeecccccceeEEEEeCCC--eEEEEeCCCcEEEe
Q 046871 36 AGINCLAVLKSSVSNGV--DYLFTGSRDGTLKRWSLADD-VGSCSATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTW 110 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~--~~L~sgs~Dg~I~iWd~~~~-~~~~~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vW 110 (764)
-.+.++-|-. ++. -.+++++. .+|++|+..+. +.+.+.++..|..+|..+.+.||- .+..+-.
T Consensus 40 ~~~~~~~~~~----~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------- 107 (356)
T 2w18_A 40 VDVSAMFWER----AGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------- 107 (356)
T ss_dssp EEEEEEEEC--------CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------
T ss_pred EEEeeeeecc----CCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------
Confidence 3566666621 222 25677775 59999999873 237899999999999999999983 3332211
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCC----CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKN----SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~----~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
.-+...|+.++|+ ++ +.++++++.+ +.+|++.+
T Consensus 108 ------------~~~~~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~~---------------------------- 144 (356)
T 2w18_A 108 ------------NLEIREIRALFCS-SDDESEKQVLLKSGNI--KAVLGLTK---------------------------- 144 (356)
T ss_dssp ------------SSSEEEEEEECC-------CCEEEEEEEEE--EEEEEETT----------------------------
T ss_pred ------------cccccceEEEEEC-CCccccccEEEeCCCe--EEEEecCC----------------------------
Confidence 1245678999999 67 8889988744 77776532
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeC-CCCceeEEeccCCcCeE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG--TEKVVRVWDP-RTGSKTIKLRGHTDNIR 263 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs--~dg~I~iwd~-~~~~~~~~l~~h~~~V~ 263 (764)
++++.+++ .|+.|++|++ .+++.+..+.+|...++
T Consensus 145 ------------------------------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 145 ------------------------------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET 182 (356)
T ss_dssp ------------------------------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC
T ss_pred ------------------------------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee
Confidence 44444433 5888899988 45788888889999999
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEeCCCCeeeEEEeeec---CceEEEEEcCCCCEE------------EEecCCCcE
Q 046871 264 SLLLDS---TGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT---DSVWALASTPTFSHV------------YSGGRDLSL 325 (764)
Q Consensus 264 ~l~~sp---dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~---~~V~~l~~spd~~~l------------~sgs~Dg~I 325 (764)
.++|++ ++.+|++++.|++|+|||+.++++++++.+|. ..+.+++|+|++.++ ++|+.|++|
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 999999 77999999999999999999999999998654 367888999999886 568889999
Q ss_pred EEEeCCCCeEEEEee------cCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccC
Q 046871 326 YLTDLATRESLLLCT------GEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLE 399 (764)
Q Consensus 326 ~iwd~~~~~~~~~~~------~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 399 (764)
++||..+++.+..+. +...+.+..++..-+++++.|++|+|||+.+++...++.+|....
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v-------------- 328 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH-------------- 328 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CC--------------
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe--------------
Confidence 999999998876542 223344445552237888899999999999999887776443221
Q ss_pred CCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEc
Q 046871 400 GSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEI 447 (764)
Q Consensus 400 ~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi 447 (764)
+..++|+|||++|++|+.|++|+|||+
T Consensus 329 ---------------------vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 ---------------------WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---------------------CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---------------------EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 224688899999999999999999996
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.5e-28 Score=264.40 Aligned_cols=224 Identities=17% Similarity=0.159 Sum_probs=163.6
Q ss_pred eEEEEeCCCcEEEecCCCCCe-----eeeeccccCCceEEEEEec-------CCCcEEEEEeCCCeEEEEeCCCCCCCCC
Q 046871 97 TLVSCSSDTTLKTWNCSSDGT-----CIRTLRQHSDYVTCLAAAE-------KNSNIVASGGLGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~-----~~~~l~~h~~~V~~l~~~p-------~~~~~lasg~~dg~I~iwdl~~~~~~~~ 164 (764)
.|++++.|++|++||... +. .+..+.+|.+.|.+++|+| .++++||+|+.|++|++||+.+.
T Consensus 103 ~las~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----- 176 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE----- 176 (393)
T ss_dssp EEEEEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT-----
T ss_pred EEEEEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC-----
Confidence 689999999999999743 33 3446789999999999984 26889999999999999999753
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRV 243 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~i 243 (764)
........|...|.+++|+|++ .+|++|+.|+.|++
T Consensus 177 -------------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~ 213 (393)
T 4gq1_A 177 -------------------------------------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI 213 (393)
T ss_dssp -------------------------------------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred -------------------------------------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence 2233456788899999999987 47999999999999
Q ss_pred EeCCCCceeEEe-------------------------ccCCcCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeeeEEE
Q 046871 244 WDPRTGSKTIKL-------------------------RGHTDNIRSLLLD-STGRYCLSGSSDSMIRLWDLGQQRCIHSY 297 (764)
Q Consensus 244 wd~~~~~~~~~l-------------------------~~h~~~V~~l~~s-pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l 297 (764)
||+++++..... .+|...+.++.|+ +|++.|++++.|+++++||+..++....+
T Consensus 214 wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 214 FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp EETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred EECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence 999887643322 3577888999987 79999999999999999999988877777
Q ss_pred eeecCceEEEEEcC--------------------CCCEEEEecCCCcEEEEeCCCCeEEEE-eecCCCeEEEEeeCCc--
Q 046871 298 AVHTDSVWALASTP--------------------TFSHVYSGGRDLSLYLTDLATRESLLL-CTGEHPILQLALHDDN-- 354 (764)
Q Consensus 298 ~~h~~~V~~l~~sp--------------------d~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~~~V~~l~~spd~-- 354 (764)
..|...+..+.+.| ++.++++|+.||.|++||+.+++.... ..+..+|.+++|+||+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence 76666555544433 334677889999999999998876554 4578899999999999
Q ss_pred eEEEeCCCcEEEeeCC
Q 046871 355 IWVATTDSSVHRWPAE 370 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~ 370 (764)
|++++.+ .+.+|.+.
T Consensus 374 LA~as~~-Gv~lvrL~ 388 (393)
T 4gq1_A 374 LAIATEG-SVLLTRLM 388 (393)
T ss_dssp EEEEESS-EEEEEEEG
T ss_pred EEEEeCC-CeEEEEEe
Confidence 6666654 56666553
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.1e-26 Score=259.60 Aligned_cols=336 Identities=13% Similarity=0.077 Sum_probs=250.2
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCC-CCCeeeeeccccC
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCS-SDGTCIRTLRQHS 126 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~-~~~~~~~~l~~h~ 126 (764)
+|++.++++++.|++|.+||..+ ++++.++..+.. +..++|+|++ +|++++.|++|.+||+. .+++++..+. +.
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t--~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDS--KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTT--CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred CCCCEEEEEEcCCCeEEEEECCC--ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 78899999999999999999988 677888874333 8899999997 89999999999999973 3467777776 45
Q ss_pred CceEEEEEecC----CCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccc
Q 046871 127 DYVTCLAAAEK----NSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAH 201 (764)
Q Consensus 127 ~~V~~l~~~p~----~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 201 (764)
..+..++|+ + +++++++++ .+++|.+||..+.........
T Consensus 222 ~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~---------------------------------- 266 (543)
T 1nir_A 222 IEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST---------------------------------- 266 (543)
T ss_dssp SEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC----------------------------------
T ss_pred CCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecc----------------------------------
Confidence 567999999 6 888888887 489999999876422110000
Q ss_pred ccCCCCccceeccCC-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEE
Q 046871 202 TSQSQGYVPIAAKGH-KESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 202 ~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sg 277 (764)
.+........| ...+.++.++|++. ++++...++.|.+||..+.+.+. .+. +...+..+.|+|+|++|+++
T Consensus 267 ----~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 267 ----RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp ----CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEE
T ss_pred ----cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEE
Confidence 00000000012 23688999999765 45677788999999998876544 343 56678899999999987655
Q ss_pred e-CCCcEEEEeCCCCeeeEEEee----ecCceEEEEEcCC-CCEEEEec-CCCcEEEEeCCC-------CeEEEEeec-C
Q 046871 278 S-SDSMIRLWDLGQQRCIHSYAV----HTDSVWALASTPT-FSHVYSGG-RDLSLYLTDLAT-------RESLLLCTG-E 342 (764)
Q Consensus 278 s-~Dg~I~iwdl~~~~~~~~l~~----h~~~V~~l~~spd-~~~l~sgs-~Dg~I~iwd~~~-------~~~~~~~~~-~ 342 (764)
+ .+++|.+||+.+++++.++.. |.+....+ ++|+ +..++++. .|++|.+||+.+ .+.+..+.. .
T Consensus 342 ~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred ecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 4 589999999999999998874 65544443 5777 56666765 589999999998 788888875 4
Q ss_pred CCeEEEEeeCCc--eEEEe-------CCCcEEEeeCCCCCCc-eeeecCCcceeccccccccccccCCCCCcccCCCCCC
Q 046871 343 HPILQLALHDDN--IWVAT-------TDSSVHRWPAEGRNPQ-KVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPN 412 (764)
Q Consensus 343 ~~V~~l~~spd~--l~~~s-------~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 412 (764)
..+..+.++|++ |++++ .+++|.+||+.+++.. ..+.-.. ++
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~--------~~-------------------- 472 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--------WA-------------------- 472 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--------HH--------------------
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh--------hc--------------------
Confidence 677899999999 77776 2679999999988765 3322000 00
Q ss_pred ccccCCCCceEeEEecCCcEEEEe-----eCCCcEEEEEccccEEeeecC
Q 046871 413 FTIPGIPGIVQHEILNNRRHVLTK-----DAAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 413 ~~i~g~~~i~~~~~s~dg~~l~t~-----s~dG~V~lWdi~tg~~i~~~~ 457 (764)
..-.+...+...+|++||++|+.+ +.|+.|.|||..|+++++++.
T Consensus 473 ~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 473 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 001234567889999999999865 348999999999999999884
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2e-26 Score=237.94 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=149.1
Q ss_pred CCCeEEEEe---CCCcEEEecCCCCCeeeeeccccCCceEEEEEec--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC
Q 046871 94 GDNTLVSCS---SDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAE--KNSNIVASGGLGAEVFIWDIEAALAPSKSGDA 168 (764)
Q Consensus 94 ~d~~l~s~s---~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p--~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~ 168 (764)
+++.+++++ .|+.|++|++..+++.+..+..|...+..++|++ .++.+|++++.|++|++||+.++.
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-------- 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-------- 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--------
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--------
Confidence 446566554 4999999999777888888889999999989884 267999999999999999998752
Q ss_pred CcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC---CCcEEEEEEcCCCCEE------------E
Q 046871 169 MEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH---KESVYALAMNDSGNLL------------V 233 (764)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~V~~l~~sp~g~~l------------~ 233 (764)
.+..+.+| ...+.+++|+|+|.++ +
T Consensus 215 ----------------------------------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 215 ----------------------------------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp ----------------------------------------EEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ----------------------------------------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 22223332 3467788899998876 5
Q ss_pred EEeCCCeEEEEeCCCCceeEEe-----ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceE-EE
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKL-----RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVW-AL 307 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~-~l 307 (764)
+|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+.++++++++.+|.+.+. ++
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 6888999999999999887665 4676665555554 88999999999999999999999999999988765 58
Q ss_pred EEcCCCCEEEEecCCCcEEEEeC
Q 046871 308 ASTPTFSHVYSGGRDLSLYLTDL 330 (764)
Q Consensus 308 ~~spd~~~l~sgs~Dg~I~iwd~ 330 (764)
+|+|||++|++|+.|++|++||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1e-24 Score=239.41 Aligned_cols=298 Identities=11% Similarity=0.038 Sum_probs=225.6
Q ss_pred CCCCeeEEEeecccccCCC-cEEEEEe----CCC----cEEEEeC--CCCCCccceeecccccceeEEEEeC--------
Q 046871 34 HCAGINCLAVLKSSVSNGV-DYLFTGS----RDG----TLKRWSL--ADDVGSCSATFESHVDWVNDAVLVG-------- 94 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~-~~L~sgs----~Dg----~I~iWd~--~~~~~~~~~~l~~h~~~V~~v~~s~-------- 94 (764)
+...|+..+| ++.| +++++|+ .|| .|++||+ .+++......+.+|...+..+++.+
T Consensus 61 ~~~~~~~~~w-----~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 61 SAQEVQPAAW-----SALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp SGGGCCHHHH-----HTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred cccCcCHHHH-----HhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence 3345666666 4555 4676876 467 8999999 7743222256889988888877764
Q ss_pred -------CCeEEEEeCC------CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCC---eEEEEeCCC
Q 046871 95 -------DNTLVSCSSD------TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA---EVFIWDIEA 158 (764)
Q Consensus 95 -------d~~l~s~s~D------g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg---~I~iwdl~~ 158 (764)
++.++.++.+ ++|++||+. +...+.+..|...+.+++|+ ++++.|++++.++ .|++||+.+
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~--g~~~~~l~~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD--GYNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETT--SCSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTT
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCC--CCCCEEEeCCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCC
Confidence 4566666654 799999973 55677788899999999999 7899999998875 999999986
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeC
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGT 237 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~ 237 (764)
+.. ..+..|...+.+++|+|+|+.|+ +++.
T Consensus 213 g~~-------------------------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~ 243 (415)
T 2hqs_A 213 GAV-------------------------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSK 243 (415)
T ss_dssp CCE-------------------------------------------------EEEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred CcE-------------------------------------------------EEeecCCCcccCEEEcCCCCEEEEEEec
Confidence 411 12445677899999999999888 6666
Q ss_pred CC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 238 EK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS-DS--MIRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 238 dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~-Dg--~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
++ .|++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|++||+.+++. ..+..|...+.+++|+|+
T Consensus 244 ~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 244 TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD 321 (415)
T ss_dssp TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT
T ss_pred CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC
Confidence 55 499999988775 567788899999999999999998876 44 688889987764 455567778999999999
Q ss_pred CCEEEEecCC---CcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCC---cEEEeeCCCCCCceeeecCCcc
Q 046871 313 FSHVYSGGRD---LSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDS---SVHRWPAEGRNPQKVFQRGGSF 384 (764)
Q Consensus 313 ~~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~ 384 (764)
|++|++++.+ ..|++||+.+++......+ ..+.+++|+|++ |++++.++ .|++||+.++ ....+..+...
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~ 399 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQ 399 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSE
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCCCCC
Confidence 9999987764 5899999999887554444 489999999999 77777666 7999998754 34455443332
Q ss_pred eeccccccc
Q 046871 385 IAGNLSFSR 393 (764)
Q Consensus 385 ~~~~~~~s~ 393 (764)
+.+.+|+|
T Consensus 400 -v~~~~~~~ 407 (415)
T 2hqs_A 400 -VKFPAWSP 407 (415)
T ss_dssp -EEEEEECC
T ss_pred -CcCCcccc
Confidence 33555655
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=5.4e-24 Score=252.01 Aligned_cols=340 Identities=11% Similarity=0.058 Sum_probs=238.5
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeC-CC-----cEEEEeCCCCCCccceeecccc------------------------
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSR-DG-----TLKRWSLADDVGSCSATFESHV------------------------ 84 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~-Dg-----~I~iWd~~~~~~~~~~~l~~h~------------------------ 84 (764)
...|++++| ||||++|++++. || .|++||+.++ +....+..+.
T Consensus 36 ~~~~~~~~~-----SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 36 GPTLMKPKV-----APDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCCCEEEEE-----CTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CC
T ss_pred CCCCCCceE-----ecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccc
Confidence 457999999 899999999998 88 8999999884 4444444433
Q ss_pred cceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCe--eeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 046871 85 DWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGT--CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALA 161 (764)
Q Consensus 85 ~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~--~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~ 161 (764)
..|.+++|+||+ +|++++. +.|++||+.. +. ....+..|...+.+++|+ +++++|+.++ ++.|++||+.++..
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~~~~~~~~~~~S-PDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQ-EGKAAVRQLTHGEGFATDAKLS-PKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSS-CSTTSCCBCCCSSSCEEEEEEC-TTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCC-CCcceEEEcccCCcccccccCC-CCCCEEEEEe-CCcEEEEecCCCCE
Confidence 348999999998 6777765 9999999743 31 455677788899999999 7899998887 46899999986432
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC--
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK-- 239 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-- 239 (764)
........ ..+ .. +............+.+++|+|||++|++++.|+
T Consensus 185 ~~~~~~~~--------------------------~~~--~~----g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~ 232 (741)
T 2ecf_A 185 MQLTADGS--------------------------TTI--GN----GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESP 232 (741)
T ss_dssp EECCCCCC--------------------------SSE--EE----SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTT
T ss_pred EEeccCCc--------------------------cce--ec----cccceeeeeccccccceEECCCCCEEEEEEEcCCC
Confidence 11100000 000 00 000000000122357899999999999987765
Q ss_pred -------------------------------eEEEEeCCC-CceeEEec--cCCcCeEEEEEcCCCCEEEEEeC-----C
Q 046871 240 -------------------------------VVRVWDPRT-GSKTIKLR--GHTDNIRSLLLDSTGRYCLSGSS-----D 280 (764)
Q Consensus 240 -------------------------------~I~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~sgs~-----D 280 (764)
.|++||+.+ ++...... .|...+.+++| |||++|++++. +
T Consensus 233 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 233 VPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp SCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSE
T ss_pred CceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCe
Confidence 889999988 77654443 47788999999 99999987654 5
Q ss_pred CcEEEEeCCCCeeeEEEeeecC----ceEEEEEcCCCCEEEEecCCCcEEEEeCC-CCeEEEEeecCCCeEEE-EeeCCc
Q 046871 281 SMIRLWDLGQQRCIHSYAVHTD----SVWALASTPTFSHVYSGGRDLSLYLTDLA-TRESLLLCTGEHPILQL-ALHDDN 354 (764)
Q Consensus 281 g~I~iwdl~~~~~~~~l~~h~~----~V~~l~~spd~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V~~l-~~spd~ 354 (764)
..|++||+.++++...+..+.. .+..++|+|||+++++++.||.+.+|.+. .+.......+...+..+ .|+|++
T Consensus 312 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 312 LDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKA 391 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTT
T ss_pred EEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCC
Confidence 6799999999998888876654 45689999999999999999987777665 33333333456678777 599998
Q ss_pred --eE-EEeCCC--cEEEeeCCC-CCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEec
Q 046871 355 --IW-VATTDS--SVHRWPAEG-RNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILN 428 (764)
Q Consensus 355 --l~-~~s~dg--~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~ 428 (764)
++ +++.++ .+++|++.. +.....+ .+..++..++|+|
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l-------------------------------------~~~~~~~~~~~sp 434 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPLQGGQPQRL-------------------------------------SKAPGMHSASFAR 434 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEETTCCCCEEC-------------------------------------CCSCSEEEEEECT
T ss_pred CEEEEEEeCCCCceEEEEEEEcCCCCeeec-------------------------------------ccCCCceEEEECC
Confidence 54 444455 899998753 2222211 1123456789999
Q ss_pred CCcEEEEeeCC----CcEEEEEccccEEeeec
Q 046871 429 NRRHVLTKDAA----GSVKLWEITRGVVVEDY 456 (764)
Q Consensus 429 dg~~l~t~s~d----G~V~lWdi~tg~~i~~~ 456 (764)
||++|+....+ +.+.+||...+ .++.+
T Consensus 435 dg~~l~~~~~~~~~p~~~~l~~~~~~-~~~~l 465 (741)
T 2ecf_A 435 NASVYVDSWSNNSTPPQIELFRANGE-KIATL 465 (741)
T ss_dssp TSSEEEEEEEETTEEEEEEEEETTSC-EEECS
T ss_pred CCCEEEEEecCCCCCCeEEEEEcCCC-eEEEe
Confidence 99988766443 57899998644 44444
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=4.7e-24 Score=241.67 Aligned_cols=286 Identities=12% Similarity=0.132 Sum_probs=225.4
Q ss_pred eeEEEeecccccCCCcEEEEEeCCCcEEEEeC--CCCCCccceeecccccceeEEEEeC----CC-eEEEEe-CCCcEEE
Q 046871 38 INCLAVLKSSVSNGVDYLFTGSRDGTLKRWSL--ADDVGSCSATFESHVDWVNDAVLVG----DN-TLVSCS-SDTTLKT 109 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~--~~~~~~~~~~l~~h~~~V~~v~~s~----d~-~l~s~s-~Dg~V~v 109 (764)
+.+++| ||||++|++++.|++|++||+ .+ .+++.++.. ...+..++|+| ++ ++++++ .+++|.+
T Consensus 181 ~~~v~~-----spdg~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v 252 (543)
T 1nir_A 181 VHISRM-----SASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 252 (543)
T ss_dssp EEEEEE-----CTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred cceEEE-----CCCCCEEEEECCCCeEEEEECcCCC--CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence 778888 899999999999999999999 55 667777774 55679999999 87 677776 4899999
Q ss_pred ecCCCCCeeeeeccc----------cCC-ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 110 WNCSSDGTCIRTLRQ----------HSD-YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~----------h~~-~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
||. .+.+++..+.. |.. .+..+.++|.+..++++...++.|.+||+.+....
T Consensus 253 ~D~-~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l---------------- 315 (543)
T 1nir_A 253 MDG-ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL---------------- 315 (543)
T ss_dssp EET-TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC----------------
T ss_pred Eec-cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc----------------
Confidence 996 55777776653 333 78899999666778888889999999999763110
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEecc
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPRTGSKTIKLRG 257 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~~~~~~~l~~ 257 (764)
......+...+..++|+|+|++++++ ..++.|.+||+.+++++..+..
T Consensus 316 -------------------------------~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 316 -------------------------------TVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp -------------------------------EEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred -------------------------------eeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 00011234456788999999987655 4688999999999998888764
Q ss_pred ----CCcCeEEEEEcCC-CCEEEEEe-CCCcEEEEeCCC-------CeeeEEEeeecCceEEEEEcCCCCEEEEec----
Q 046871 258 ----HTDNIRSLLLDST-GRYCLSGS-SDSMIRLWDLGQ-------QRCIHSYAVHTDSVWALASTPTFSHVYSGG---- 320 (764)
Q Consensus 258 ----h~~~V~~l~~spd-g~~l~sgs-~Dg~I~iwdl~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~sgs---- 320 (764)
|.+....+ ++|+ +..++++. .|++|.+||+.+ +++++++..|.+.+..++++|++++|++++
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC
Confidence 55444343 5677 55566665 589999999988 899999999998999999999999999987
Q ss_pred ---CCCcEEEEeCCCCeEE-EEe---------ecCCCeEEEEeeCCc--eEEEe-----CCCcEEEeeCCCCCCceeeec
Q 046871 321 ---RDLSLYLTDLATRESL-LLC---------TGEHPILQLALHDDN--IWVAT-----TDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 321 ---~Dg~I~iwd~~~~~~~-~~~---------~~~~~V~~l~~spd~--l~~~s-----~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.+++|.+||+.+++.. ..+ .+...+..+.|+|+| ++++. .++.|.|||..++++.++++.
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 2779999999988766 443 235679999999999 66653 379999999999998887763
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=5.3e-24 Score=233.75 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=214.3
Q ss_pred ccceeEEEEeCCC--eEEEEe----CCC----cEEEecC--CCCCeee--eeccccCCceEEEEEecC------------
Q 046871 84 VDWVNDAVLVGDN--TLVSCS----SDT----TLKTWNC--SSDGTCI--RTLRQHSDYVTCLAAAEK------------ 137 (764)
Q Consensus 84 ~~~V~~v~~s~d~--~l~s~s----~Dg----~V~vWd~--~~~~~~~--~~l~~h~~~V~~l~~~p~------------ 137 (764)
...+....|.+.+ .+++++ .|| +|++||+ .. ++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3467777888776 566776 467 8999997 44 4455 457788888777776531
Q ss_pred -CCcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccc
Q 046871 138 -NSNIVASGGLG------AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVP 210 (764)
Q Consensus 138 -~~~~lasg~~d------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 210 (764)
.+..++.++.+ +.|++||+... ..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------------------------------------------~~ 171 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------------------------------------------NQ 171 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC-------------------------------------------------SC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC-------------------------------------------------CC
Confidence 14455555443 79999998742 11
Q ss_pred eeccCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE-EEeCCCc--EE
Q 046871 211 IAAKGHKESVYALAMNDSGNLLVSGGTEK---VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSM--IR 284 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-sgs~Dg~--I~ 284 (764)
..+..|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.|+. |+
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 33556788999999999999999999875 9999999998775 5667888999999999999887 6666655 99
Q ss_pred EEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecC-CC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe
Q 046871 285 LWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGR-DL--SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT 359 (764)
Q Consensus 285 iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s 359 (764)
+||+.++++ ..+..|...+.+++|+||+++|++++. ++ .|++||+.+++......+...+.+++|+|++ |++++
T Consensus 251 ~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~ 329 (415)
T 2hqs_A 251 VMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS 329 (415)
T ss_dssp EEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEE
Confidence 999988776 567778889999999999999987775 45 6888899988766555566788999999999 66666
Q ss_pred CC---CcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEe
Q 046871 360 TD---SSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTK 436 (764)
Q Consensus 360 ~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~ 436 (764)
.+ ..|++||+.+++... +. ++..+..++|+|||++|+++
T Consensus 330 ~~~g~~~i~~~d~~~~~~~~-l~-------------------------------------~~~~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 330 SNGGQQHIAKQDLATGGVQV-LS-------------------------------------STFLDETPSLAPNGTMVIYS 371 (415)
T ss_dssp ECSSCEEEEEEETTTCCEEE-CC-------------------------------------CSSSCEEEEECTTSSEEEEE
T ss_pred CcCCceEEEEEECCCCCEEE-ec-------------------------------------CCCCcCCeEEcCCCCEEEEE
Confidence 53 589999998765421 11 01145678999999999998
Q ss_pred eCCC---cEEEEEccccEEeeec
Q 046871 437 DAAG---SVKLWEITRGVVVEDY 456 (764)
Q Consensus 437 s~dG---~V~lWdi~tg~~i~~~ 456 (764)
+.++ .|++||+. |..++.+
T Consensus 372 s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp EEETTEEEEEEEETT-SCCEEEC
T ss_pred EcCCCccEEEEEECC-CCcEEEe
Confidence 8877 79999987 4444444
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=4.3e-23 Score=253.31 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=219.7
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEe
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTW 110 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vW 110 (764)
.+|...+.+++| +++ .++++++.||.++||.++.. +.....+..|. .+...+|+||+ .|+.+ .++.|++|
T Consensus 200 ~~~~~~v~~~~~-----s~d-~l~~~~~~dg~~~l~~~~~~-g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~ 270 (1045)
T 1k32_A 200 VDMSTHVSSPVI-----VGH-RIYFITDIDGFGQIYSTDLD-GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIF 270 (1045)
T ss_dssp ECCSSCCEEEEE-----ETT-EEEEEECTTSSCEEEEEETT-SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEE
T ss_pred cCCCCcccceEE-----eCC-EEEEEEeccCceEEEEEeCC-CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEe
Confidence 379999999999 566 67778888999999987642 22345565555 46678999998 56665 58999999
Q ss_pred cCCCCCeeeeeccc-----------cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 111 NCSSDGTCIRTLRQ-----------HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 111 d~~~~~~~~~~l~~-----------h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
++ . ...+..+.. |...+.+++|+|+++.++++++ ++.|.+|++.++.
T Consensus 271 d~-~-~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------------------- 328 (1045)
T 1k32_A 271 NP-D-TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------------------- 328 (1045)
T ss_dssp CT-T-TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------------------
T ss_pred cC-C-ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------------------
Confidence 97 3 333334444 4457899999934677777776 7889999987531
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCC-cEEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeEEecc
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKE-SVYALAMNDSGNLLVSGGTEKVVR-VWDPRTGSKTIKLRG 257 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~V~~l~~sp~g~~l~sgs~dg~I~-iwd~~~~~~~~~l~~ 257 (764)
...+..|.. .+..++|+ +|+.|++++.+..+. +||+.+++.. .+.+
T Consensus 329 ------------------------------~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~ 376 (1045)
T 1k32_A 329 ------------------------------VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEE 376 (1045)
T ss_dssp ------------------------------EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCC
T ss_pred ------------------------------eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecC
Confidence 112344555 78999999 999999998888899 9999877654 4447
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC----------cEEE
Q 046871 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL----------SLYL 327 (764)
Q Consensus 258 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg----------~I~i 327 (764)
|...+..++|+|||++|++++.++.|++||+.+++....+..|.+.+.+++|+|||++|++++.++ .|++
T Consensus 377 ~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 377 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 888999999999999999999999999999999998888878999999999999999998877644 8999
Q ss_pred EeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCC
Q 046871 328 TDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 328 wd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~ 371 (764)
||+.+++......+...+..++|+|++ |++++.++...+|+...
T Consensus 457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999998865555667778999999999 88888888888887653
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=6.6e-23 Score=251.67 Aligned_cols=360 Identities=11% Similarity=0.025 Sum_probs=254.3
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeCC------CcEEEEeCCCCCCccceeecccccce-------eEEEEeCCC-e
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSRD------GTLKRWSLADDVGSCSATFESHVDWV-------NDAVLVGDN-T 97 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~D------g~I~iWd~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~-~ 97 (764)
.+|...|.+++| ||||++||+++.+ ..|++||+.++ + ...+..|...+ .+++|+||+ .
T Consensus 49 t~~~~~v~~~~~-----SPDG~~la~~s~~~~~~~~~~i~~~d~~~g--~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~l 120 (1045)
T 1k32_A 49 VSNLGVINNARF-----FPDGRKIAIRVMRGSSLNTADLYFYNGENG--E-IKRITYFSGKSTGRRMFTDVAGFDPDGNL 120 (1045)
T ss_dssp ECSSSEEEEEEE-----CTTSSEEEEEEEESTTCCEEEEEEEETTTT--E-EEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred eeCCCcccCeEE-----CCCCCEEEEEEeeccCCCCCeEEEEECCCC--C-eEEcccCCCcccccccccccccCCCCCEE
Confidence 368999999999 8999999988643 47999999873 3 67788898888 999999998 5
Q ss_pred EEEEeCC------CcEEEecCCCCCeee-------------------------------------------------eec
Q 046871 98 LVSCSSD------TTLKTWNCSSDGTCI-------------------------------------------------RTL 122 (764)
Q Consensus 98 l~s~s~D------g~V~vWd~~~~~~~~-------------------------------------------------~~l 122 (764)
+++++.+ ..|.+|++. .+... ..+
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~-~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVEND-GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGG-GTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EEEECCcCCCcccceEEEEECC-CCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 5666644 347777752 22211 122
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
.+|...+.++.|+ ++ .++++++.++.+.+|++....................++..+..+ .. ...+.+.+++
T Consensus 200 ~~~~~~v~~~~~s-~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~l-----a~-~~~~~i~~~d 271 (1045)
T 1k32_A 200 VDMSTHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRI-----LF-SKGGSIYIFN 271 (1045)
T ss_dssp ECCSSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCE-----EE-EETTEEEEEC
T ss_pred cCCCCcccceEEe-CC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEE-----EE-EeCCEEEEec
Confidence 3566778888888 44 677788888989999865321111100001111111222222211 11 1234455554
Q ss_pred cCCCCccceeccC-----------CCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc-CeEEEEEcC
Q 046871 203 SQSQGYVPIAAKG-----------HKESVYALAMN-DSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD-NIRSLLLDS 269 (764)
Q Consensus 203 ~~~~~~~~~~~~~-----------~~~~V~~l~~s-p~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~sp 269 (764)
... ..+..+.. |...+.+++|+ |+|++|++++ ++.|.+|+...++.. .+..|.. .+..++|+
T Consensus 272 ~~~--~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 272 PDT--EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp TTT--CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-
T ss_pred CCc--eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-
Confidence 411 11112222 34468899999 9999999887 789999999877644 4666777 89999999
Q ss_pred CCCEEEEEeCCCcEE-EEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe-ecCCCeEE
Q 046871 270 TGRYCLSGSSDSMIR-LWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC-TGEHPILQ 347 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~-iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~V~~ 347 (764)
||+.|++++.++.+. +||+..++.. .+..|...+..++|+|||++|++++.++.|++||+.+++..... .+...+.+
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 999999999888898 9999877654 34478889999999999999999999999999999999887777 56778899
Q ss_pred EEeeCCc--eEEEeCC----------CcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccc
Q 046871 348 LALHDDN--IWVATTD----------SSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTI 415 (764)
Q Consensus 348 l~~spd~--l~~~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i 415 (764)
++|+||+ |++++.+ +.|++||+.+++ ...+..
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~----------------------------------- 469 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT----------------------------------- 469 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC-----------------------------------
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC-----------------------------------
Confidence 9999999 6666554 489999998764 222211
Q ss_pred cCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccE
Q 046871 416 PGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGV 451 (764)
Q Consensus 416 ~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~ 451 (764)
+...+..++|+|||++|++++.++...+|+.....
T Consensus 470 -~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 470 -ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp -SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred -CCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 11224567899999999999999999999876443
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.4e-22 Score=237.17 Aligned_cols=346 Identities=8% Similarity=0.045 Sum_probs=227.7
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccccc---ceeEEEEeCCC-eEEEEeCC--------
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD---WVNDAVLVGDN-TLVSCSSD-------- 104 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~---~V~~v~~s~d~-~l~s~s~D-------- 104 (764)
.+.+++| ||||+++++ +.||+|++||+.+ ++....+..|.. .|.+++|+||+ +|++++.+
T Consensus 18 ~~~~~~~-----spdg~~~~~-~~dg~i~~~d~~~--g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 18 HDPEAKW-----ISDTEFIYR-EQKGTVRLWNVET--NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCCCCB-----SSSSCBCCC-CSSSCEEEBCGGG--CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred cccccEE-----cCCCcEEEE-eCCCCEEEEECCC--CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 3556666 899998877 7899999999988 455666666665 49999999998 78888764
Q ss_pred -CcEEEecCCCCCee--eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 105 -TTLKTWNCSSDGTC--IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 105 -g~V~vWd~~~~~~~--~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
+.|.+||+. +++. +.....|...+..++|+ ++++.|+.++. +.|++||+.++..........
T Consensus 90 ~~~i~~~d~~-~~~~~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~------------ 154 (723)
T 1xfd_A 90 TGYYVLSKIP-HGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK------------ 154 (723)
T ss_dssp CSEEEEEESS-SCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCB------------
T ss_pred eeeEEEEECC-CCceEeccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCC------------
Confidence 778899974 3443 22333455568899999 78888888876 789999998743211000000
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC----------------------
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK---------------------- 239 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg---------------------- 239 (764)
..+ +..... .. .. .....+.+.+++|+|||+.|++++.++
T Consensus 155 --------------~~~-~~~g~~-~~-v~-~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 155 --------------EGV-IYNGLS-DW-LY-EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp --------------TTT-EEEEEC-CH-HH-HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred --------------CCc-eECccc-ce-eE-EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 000 000000 00 00 000012347899999999999887543
Q ss_pred ------------eEEEEeCCCCceeEEeccC------CcCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCeeeEEE
Q 046871 240 ------------VVRVWDPRTGSKTIKLRGH------TDNIRSLLLDSTGRYCLSGSS----DSMIRLWDLGQQRCIHSY 297 (764)
Q Consensus 240 ------------~I~iwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~l~sgs~----Dg~I~iwdl~~~~~~~~l 297 (764)
.|++||+.+++....+..+ ...+.+++|+|||++|++.+. +..|++||+.++++...+
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 7999999988866666654 568899999999998877653 357999999999887776
Q ss_pred eee-cCceE----EEEEcCCCCEEEE--ecCCC------cEEEEe-CCCCe---EEEEeecCCCeEE-EEeeCCc--eEE
Q 046871 298 AVH-TDSVW----ALASTPTFSHVYS--GGRDL------SLYLTD-LATRE---SLLLCTGEHPILQ-LALHDDN--IWV 357 (764)
Q Consensus 298 ~~h-~~~V~----~l~~spd~~~l~s--gs~Dg------~I~iwd-~~~~~---~~~~~~~~~~V~~-l~~spd~--l~~ 357 (764)
..+ ...+. .++|+|||+.|+. +..++ .|++|| ..++. ......+...+.. ++|+|++ |+.
T Consensus 297 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence 554 34443 7899999997774 45667 577788 45554 3333333445554 6999999 655
Q ss_pred EeCC---CcEEEeeCCCCCC--ceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcE
Q 046871 358 ATTD---SSVHRWPAEGRNP--QKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRH 432 (764)
Q Consensus 358 ~s~d---g~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~ 432 (764)
.+.+ +.+++|++..... ...+.. .+.+...+..++|+|||++
T Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~---------------------------------~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTVGNFNRQCLSC---------------------------------DLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSST---------------------------------TSSSSCCCCEEEECTTSSE
T ss_pred EEcCCCCcceEEEEEeCCCCCCcceecc---------------------------------cccCCCCeEEEEECCCCCE
Confidence 5544 7899998864321 111100 0001234667899999998
Q ss_pred EEEee-CCC--cEEEEEccccEEeeec
Q 046871 433 VLTKD-AAG--SVKLWEITRGVVVEDY 456 (764)
Q Consensus 433 l~t~s-~dG--~V~lWdi~tg~~i~~~ 456 (764)
|+... ..+ .+.+++..++..+..+
T Consensus 424 l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 424 FLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp EEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred EEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 87643 332 3456677677665554
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=5e-22 Score=233.76 Aligned_cols=326 Identities=13% Similarity=0.070 Sum_probs=219.3
Q ss_pred eeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccc-eeecccc-----------------cceeEEEEeCCCeEE
Q 046871 38 INCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCS-ATFESHV-----------------DWVNDAVLVGDNTLV 99 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~-~~l~~h~-----------------~~V~~v~~s~d~~l~ 99 (764)
++.+.| + ++.+++++.|| | +||+.+++ .+ ..+..|. ..|.+++|+||+.++
T Consensus 28 ~~~~~w-----~--g~~~~~~~~~~-i-~~d~~tg~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~ 96 (706)
T 2z3z_A 28 VVGLQW-----M--GDNYVFIEGDD-L-VFNKANGK--SAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVV 96 (706)
T ss_dssp CTTCEE-----E--TTEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEE
T ss_pred CCCCcC-----c--CCeEEEEeCCc-E-EEECCCCc--EeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEE
Confidence 555666 4 56677777788 8 99999844 31 3333332 469999999997555
Q ss_pred EEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCC-----CCCCCCCCCCCcCCcC
Q 046871 100 SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEA-----ALAPSKSGDAMEDDCS 174 (764)
Q Consensus 100 s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~-----~~~~~~~~~~~~~~~~ 174 (764)
.+ .+++|++||+ .+++.. .+..+...+.+++|+ ++++.|+++ .++.|++||+.+ +..........
T Consensus 97 ~~-~~~~i~~~d~-~~~~~~-~l~~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~----- 166 (706)
T 2z3z_A 97 LF-TQGGLVGFDM-LARKVT-YLFDTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT----- 166 (706)
T ss_dssp EE-ETTEEEEEET-TTTEEE-EEECCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB-----
T ss_pred EE-ECCEEEEEEC-CCCceE-EccCCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC-----
Confidence 55 4699999997 345443 344566778899999 788888885 679999999976 32211000000
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe------------------
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG------------------ 236 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs------------------ 236 (764)
.. +.. +.. ....+...+.+++|+|||++|++++
T Consensus 167 ---------------------~~--~~~----g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 167 ---------------------ET--LVY----GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp ---------------------TT--EEE----SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred ---------------------CC--eEc----ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence 00 000 000 1112234567899999999999987
Q ss_pred ---------------CCCeEEEEeCCCCceeEEec--cCCcCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeee
Q 046871 237 ---------------TEKVVRVWDPRTGSKTIKLR--GHTDNIRSLLLDSTGRYCLSGSSDS-----MIRLWDLGQQRCI 294 (764)
Q Consensus 237 ---------------~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~sgs~Dg-----~I~iwdl~~~~~~ 294 (764)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.++ .|++||+.+++..
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 44689999999887654432 4667899999999999999988776 8999999998444
Q ss_pred EEEe-eec-C---ceEEEEEcC--CCCEEEEecCCCcEEEEeCC-CCeEEEEee-cCCCeEE-EEeeCCc--eEEEeC-C
Q 046871 295 HSYA-VHT-D---SVWALASTP--TFSHVYSGGRDLSLYLTDLA-TRESLLLCT-GEHPILQ-LALHDDN--IWVATT-D 361 (764)
Q Consensus 295 ~~l~-~h~-~---~V~~l~~sp--d~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~-~~~~V~~-l~~spd~--l~~~s~-d 361 (764)
..+. .+. . .+.+++|+| +++++++++.|+.+++|++. ++..+..+. +...+.. ++|+|++ |++++. +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 4433 222 2 246789999 99999999999999999876 455544443 4556776 7999998 555544 4
Q ss_pred C----cEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee
Q 046871 362 S----SVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD 437 (764)
Q Consensus 362 g----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s 437 (764)
+ .|..|++.+++.. .+ ....++..++|+|||++|+...
T Consensus 378 ~~~~~~l~~~d~~~~~~~-~l-------------------------------------~~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKTK-DL-------------------------------------TPESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp CTTCBEEEEEETTCCCCE-ES-------------------------------------CCSSSEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEEEcCCCCce-ec-------------------------------------cCCCceEEEEECCCCCEEEEEe
Confidence 4 5666666554321 11 1123466789999999887764
Q ss_pred CC----CcEEEEEccccE
Q 046871 438 AA----GSVKLWEITRGV 451 (764)
Q Consensus 438 ~d----G~V~lWdi~tg~ 451 (764)
.+ +.|++||+.+++
T Consensus 420 ~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 420 QSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECSSCSCEEEEEESSSCE
T ss_pred cCCCCCcEEEEEECCCCe
Confidence 43 569999999887
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.5e-20 Score=200.86 Aligned_cols=268 Identities=14% Similarity=0.116 Sum_probs=207.1
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeC-------CCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eE-EEEeCCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSR-------DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TL-VSCSSDT 105 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~-------Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l-~s~s~Dg 105 (764)
...+..+++ +|++++|++++. ++.|.+||..+ ++.+..+.. ...+..++|++++ ++ ++...++
T Consensus 40 ~~~~~~~~~-----s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 40 GKGAYEMAY-----SQQENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp ESSEEEEEE-----ETTTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTT
T ss_pred ccCccceEE-----CCCCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEec-CCCcceEEECCCCCEEEEEecCCC
Confidence 356788888 799999988874 56899999988 555555553 3457889999997 34 5556679
Q ss_pred cEEEecCCCCCeeeeeccccCC---------ceEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSD---------YVTCLAAAEKNSNIVASGG--LGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~---------~V~~l~~~p~~~~~lasg~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
.|.+||+ .+++.+..+..+.. .+.+++|+ ++++++++++ .++.|.+||+.++..
T Consensus 112 ~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~~~------------- 176 (353)
T 3vgz_A 112 AVTAIDA-KTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNIKL------------- 176 (353)
T ss_dssp EEEEEET-TTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTTEE-------------
T ss_pred EEEEEeC-CCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCCce-------------
Confidence 9999997 45666666654432 27889999 6677666555 478999999986421
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK 254 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~ 254 (764)
...+..+...+.+++|+|+|+++++++.++.|.+||+.+++.+..
T Consensus 177 -----------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 177 -----------------------------------KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR 221 (353)
T ss_dssp -----------------------------------EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred -----------------------------------EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence 112222344467889999999999999999999999999988877
Q ss_pred ecc----CCcCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe-cCCCcEEEE
Q 046871 255 LRG----HTDNIRSLLLDSTGRYCLSGSS-DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG-GRDLSLYLT 328 (764)
Q Consensus 255 l~~----h~~~V~~l~~spdg~~l~sgs~-Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iw 328 (764)
+.. +...+..++|+|+|+++++++. ++.|.+||+.+++.+..+..+. ...++|+|++++++.+ ..++.|.+|
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEE
Confidence 654 4557889999999998776665 4899999999999888887544 2579999999976654 478999999
Q ss_pred eCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCC
Q 046871 329 DLATRESLLLCTGEHPILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 329 d~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg 362 (764)
|+.+++.+..+.....+.+++|+|++ ++++..++
T Consensus 300 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 300 DAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 99999998888877788999999998 66666554
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=6.8e-21 Score=201.85 Aligned_cols=284 Identities=11% Similarity=0.108 Sum_probs=197.3
Q ss_pred EEeCC-C-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCC
Q 046871 91 VLVGD-N-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGD 167 (764)
Q Consensus 91 ~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~ 167 (764)
.|.++ + .+++++.++.|.+||+ .+++....+..+...+ +++|+ ++++++++++ .++.|.+||+.++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~------ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPP------ 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSC------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCce------
Confidence 45544 3 5788888999999997 4567766666666667 99999 6676555554 488999999986421
Q ss_pred CCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEE
Q 046871 168 AMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK---VVRVW 244 (764)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg---~I~iw 244 (764)
.......+.....+++|+|+|++++++..++ .|.+|
T Consensus 75 -----------------------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 75 -----------------------------------------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp -----------------------------------------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred -----------------------------------------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 0122333444454599999999999655553 89999
Q ss_pred eCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE-eCCCc-EEEEeCCCCeeeE----EEeeecCceEEEEEcCCCCEEE-
Q 046871 245 DPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG-SSDSM-IRLWDLGQQRCIH----SYAVHTDSVWALASTPTFSHVY- 317 (764)
Q Consensus 245 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg-s~Dg~-I~iwdl~~~~~~~----~l~~h~~~V~~l~~spd~~~l~- 317 (764)
|+.+++.+..+.. .....+++|+|||++++++ ..++. |.+|++.....+. ....+...+..++|+|++++++
T Consensus 114 d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 114 SFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp ETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred ECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 9999988887764 4456899999999866554 55588 9999987543332 1112345689999999999665
Q ss_pred EecCCCcEEEEeCCCCeE---EEEeecCCCeEEEEeeCCc--eEEEe-CCCcEEEeeCCCCCCceeeecCCcceeccccc
Q 046871 318 SGGRDLSLYLTDLATRES---LLLCTGEHPILQLALHDDN--IWVAT-TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSF 391 (764)
Q Consensus 318 sgs~Dg~I~iwd~~~~~~---~~~~~~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
++..++.|++||+.+++. +..+.....+..++|+|++ +++++ .++.|.+||+.+++....-.... .+..
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~ 267 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH-----GLLI 267 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC-----CCCC
T ss_pred EeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc-----cccc
Confidence 555689999999999887 7777777788999999999 55555 46789999998876522111000 0000
Q ss_pred cccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee-CCCcEEEEEccccEE
Q 046871 392 SRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD-AAGSVKLWEITRGVV 452 (764)
Q Consensus 392 s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s-~dG~V~lWdi~tg~~ 452 (764)
. + . .......++|+|||++|++++ .++.|.+||+.+...
T Consensus 268 ~------------------~-~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 268 D------------------P-R---PLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp C------------------C-G---GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred C------------------C-C---CcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 0 0 0 001124578999999886554 467999999986543
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=3.1e-21 Score=204.45 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=205.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccceeecccc-c-ceeEEEEeCCC-eE-EEEeCCCcEEEecCCCCCeeeeeccc-c--
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHV-D-WVNDAVLVGDN-TL-VSCSSDTTLKTWNCSSDGTCIRTLRQ-H-- 125 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~-~V~~v~~s~d~-~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~-h-- 125 (764)
++|++++.++.|++||+.+ ++.+..+.... . .+.+++|+|++ .+ ++++.++.|.+||+ .+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC-CCCCeEeeEEcCCcc
Confidence 5799999999999999987 55566554322 2 48899999997 54 55666889999997 44555554432 1
Q ss_pred --CCceEEEEEecCCCcEEEEEe------------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 126 --SDYVTCLAAAEKNSNIVASGG------------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 126 --~~~V~~l~~~p~~~~~lasg~------------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
...+.+++|+ ++++++++++ .++.|.+||+.++..
T Consensus 79 ~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------------------------------ 127 (337)
T 1pby_B 79 ERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR------------------------------ 127 (337)
T ss_dssp EEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE------------------------------
T ss_pred cccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCcE------------------------------
Confidence 2257789999 7788888775 579999999976311
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG 271 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 271 (764)
...+. ....+.+++|+|+|++|+++ ++.|.+||+.+++.+..+..+.. ...+.|+|++
T Consensus 128 ------------------~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg 185 (337)
T 1pby_B 128 ------------------RKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDV 185 (337)
T ss_dssp ------------------EEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBC
T ss_pred ------------------EEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCc
Confidence 11111 13346788999999988887 68899999999988877765431 1123789999
Q ss_pred CEEEEEeCCC------------------------cEEEEeCCCCeee-EEEeeecCceEEEEEcCCCCEEEEecCCCcEE
Q 046871 272 RYCLSGSSDS------------------------MIRLWDLGQQRCI-HSYAVHTDSVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 272 ~~l~sgs~Dg------------------------~I~iwdl~~~~~~-~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
++++..+.++ .|.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 8776554332 4689999988764 2344566678899999999999988 79999
Q ss_pred EEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 327 LTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 327 iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
+||+.+++.+..+.....+.+++|+|++ +++++.++.|.+||+.+++....+..
T Consensus 264 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999988888777788999999998 88888899999999999988777654
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=5.6e-21 Score=202.98 Aligned_cols=269 Identities=11% Similarity=0.140 Sum_probs=186.9
Q ss_pred cEEEEE-eCCCcEEEEeCCC-CCCccceeecccccceeEEEEeCCC-eEEEEeCC-CcEEEecCCC-CCe--eeeecccc
Q 046871 53 DYLFTG-SRDGTLKRWSLAD-DVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD-TTLKTWNCSS-DGT--CIRTLRQH 125 (764)
Q Consensus 53 ~~L~sg-s~Dg~I~iWd~~~-~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D-g~V~vWd~~~-~~~--~~~~l~~h 125 (764)
++++++ +.|+.|++||++. +....+.. ..|...+.+++|+|++ +|++++.+ +.|++|++.. .+. .+..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 444444 7899999999963 22222333 3577789999999997 67777776 9999999852 222 33344433
Q ss_pred CCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccC
Q 046871 126 SDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQ 204 (764)
Q Consensus 126 ~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 204 (764)
. .+.+++|+ ++++++++++ .++.|.+||+..+..
T Consensus 84 ~-~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~------------------------------------------- 118 (343)
T 1ri6_A 84 G-SLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLP------------------------------------------- 118 (343)
T ss_dssp S-CCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEE-------------------------------------------
T ss_pred C-CCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCcc-------------------------------------------
Confidence 3 78899999 6777665555 588999999842100
Q ss_pred CCCccceeccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CceeE----Eecc-CCcCeEEEEEcCCCCEEEEE
Q 046871 205 SQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-TEKVVRVWDPRT-GSKTI----KLRG-HTDNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 205 ~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iwd~~~-~~~~~----~l~~-h~~~V~~l~~spdg~~l~sg 277 (764)
....... .....+.+++|+|+|+++++++ .++.|++||+.+ ++... .+.. ....+..++|+|++++++++
T Consensus 119 --~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 119 --VGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp --EEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred --ccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE
Confidence 0011111 1233478899999999888877 899999999987 54432 2222 34578899999999977655
Q ss_pred e-CCCcEEEEeCCC--Cee--eEEEee----e--cCceEEEEEcCCCCEEE-EecCCCcEEEEeCC--C--CeEEEEeec
Q 046871 278 S-SDSMIRLWDLGQ--QRC--IHSYAV----H--TDSVWALASTPTFSHVY-SGGRDLSLYLTDLA--T--RESLLLCTG 341 (764)
Q Consensus 278 s-~Dg~I~iwdl~~--~~~--~~~l~~----h--~~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~--~--~~~~~~~~~ 341 (764)
+ .++.|++||+.. ++. ...+.. + ...+..++|+|++++|+ ++..++.|.+||+. + .+.+..+..
T Consensus 196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence 4 789999999953 432 223321 1 23567899999999887 55579999999998 3 344444554
Q ss_pred CCCeEEEEeeCCc--eEEEe-CCCcEEEeeCC
Q 046871 342 EHPILQLALHDDN--IWVAT-TDSSVHRWPAE 370 (764)
Q Consensus 342 ~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~ 370 (764)
...+.+++|+|++ +++++ .++.|.+|+++
T Consensus 276 ~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 276 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 5558899999998 77776 57999999654
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.8e-21 Score=201.57 Aligned_cols=250 Identities=11% Similarity=0.097 Sum_probs=188.2
Q ss_pred EEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeecccc-CCceEEEEE
Q 046871 57 TGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQH-SDYVTCLAA 134 (764)
Q Consensus 57 sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h-~~~V~~l~~ 134 (764)
+++.|+.|++||+.++ + ...+..|...|.+++|+|++ +|++++ ++.|++||+...++.......| ...+.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~--~-~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--K-MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTT--E-EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCC--c-eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 3467899999999873 3 34566789999999999998 566655 8899999984315555555555 467899999
Q ss_pred ecCCCcEEEEEe--CCCeEEEEeCC--CCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccc
Q 046871 135 AEKNSNIVASGG--LGAEVFIWDIE--AALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVP 210 (764)
Q Consensus 135 ~p~~~~~lasg~--~dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 210 (764)
+ +++++|++++ .++.+.+|.++ ++. .
T Consensus 93 s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~-------------------------------------------------~ 122 (297)
T 2ojh_A 93 S-PDGALYAISDKVEFGKSAIYLLPSTGGT-------------------------------------------------P 122 (297)
T ss_dssp C-TTSSEEEEEECTTTSSCEEEEEETTCCC-------------------------------------------------C
T ss_pred C-CCCCEEEEEEeCCCCcceEEEEECCCCc-------------------------------------------------e
Confidence 9 7888998888 33455555543 210 0
Q ss_pred eeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC-CceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 046871 211 IAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPRT-GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRLWD 287 (764)
Q Consensus 211 ~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd 287 (764)
..+.. ...+..++|+|++++|+ +++.++.+++|+++. +.....+..|...+.+++|+|+|++|+.++ .++.+++|+
T Consensus 123 ~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~ 201 (297)
T 2ojh_A 123 RLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR 201 (297)
T ss_dssp EECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence 11222 22488899999999887 778899999998532 334556777888999999999999888766 589999999
Q ss_pred CC-CCeeeEEEeeecCceEEEEEcCCCCEEEEecCC-----------CcEEEEeCCCCeEEEEe---ecCCCeEEEEeeC
Q 046871 288 LG-QQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD-----------LSLYLTDLATRESLLLC---TGEHPILQLALHD 352 (764)
Q Consensus 288 l~-~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D-----------g~I~iwd~~~~~~~~~~---~~~~~V~~l~~sp 352 (764)
+. .+..+..+..|...+.+++|+|++++|++++.+ +.|++||+.+++..... .+...+.+++|+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 202 VRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp EETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT
T ss_pred ECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC
Confidence 86 566677888888889999999999999888765 56999999987654433 4567899999999
Q ss_pred Cc--eEEEeCC
Q 046871 353 DN--IWVATTD 361 (764)
Q Consensus 353 d~--l~~~s~d 361 (764)
++ |++++.+
T Consensus 282 dg~~l~~~~~~ 292 (297)
T 2ojh_A 282 DGDEFAYVRYF 292 (297)
T ss_dssp TSSEEEEEEEC
T ss_pred CCCEEEEEEec
Confidence 99 6666554
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.7e-20 Score=197.22 Aligned_cols=271 Identities=9% Similarity=0.088 Sum_probs=194.5
Q ss_pred ccCCCcE-EEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeC-CCcEEEecCCCCCee-eeecc
Q 046871 48 VSNGVDY-LFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSS-DTTLKTWNCSSDGTC-IRTLR 123 (764)
Q Consensus 48 ~S~d~~~-L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~-Dg~V~vWd~~~~~~~-~~~l~ 123 (764)
|++++++ +++++.++.|++||+.+ ++....+..+...+ +++|+|++ ++++++. ++.|.+||+. .++. ...+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~ 80 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDT--LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ-LEPPKVVAIQ 80 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTT--CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS-SSSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcc--cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC-CCceeEEecc
Confidence 3455555 66778899999999988 55566666666667 99999997 4655555 8899999974 4555 66666
Q ss_pred ccCCceEEEEEecCCCcEEEEEeCCC---eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccc
Q 046871 124 QHSDYVTCLAAAEKNSNIVASGGLGA---EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISA 200 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~lasg~~dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 200 (764)
.+..+..+++|+ +++++++++..++ .|.+||+.++..
T Consensus 81 ~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~--------------------------------------- 120 (331)
T 3u4y_A 81 EGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKF--------------------------------------- 120 (331)
T ss_dssp ECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEE---------------------------------------
T ss_pred cCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCe---------------------------------------
Confidence 676666669999 7888888555553 899999976421
Q ss_pred cccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCCe-EEEEeCCCCceeE----EeccCCcCeEEEEEcCCCCEE
Q 046871 201 HTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEKV-VRVWDPRTGSKTI----KLRGHTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg~-I~iwd~~~~~~~~----~l~~h~~~V~~l~~spdg~~l 274 (764)
...+. ......+++|+|+|+++++ +..++. |.+|++.....+. ...........++|+|||+++
T Consensus 121 ---------~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l 190 (331)
T 3u4y_A 121 ---------ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA 190 (331)
T ss_dssp ---------EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred ---------EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence 11111 2344689999999985554 455577 9999987644331 222344568999999999976
Q ss_pred EEE-eCCCcEEEEeCCCCee---eEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCCCeE--EEEeecC-----
Q 046871 275 LSG-SSDSMIRLWDLGQQRC---IHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLATRES--LLLCTGE----- 342 (764)
Q Consensus 275 ~sg-s~Dg~I~iwdl~~~~~---~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~~~--~~~~~~~----- 342 (764)
+++ ..++.|++||+.+++. +..+.. ...+..++|+|++++++.++ .++.|.+||+.+++. +..+...
T Consensus 191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 191 FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence 554 4689999999999888 777764 45678999999999776554 578899999999877 3322211
Q ss_pred C---CeEEEEeeCCc--eEEEeC-CCcEEEeeCCCCC
Q 046871 343 H---PILQLALHDDN--IWVATT-DSSVHRWPAEGRN 373 (764)
Q Consensus 343 ~---~V~~l~~spd~--l~~~s~-dg~I~iwd~~~~~ 373 (764)
. ....++|+|++ +++++. ++.|.+||+....
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 1 23568999999 666655 5699999997643
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=5.1e-21 Score=226.46 Aligned_cols=285 Identities=8% Similarity=0.042 Sum_probs=209.8
Q ss_pred ccceeEEEEeCCC-eEEEEeC-CC-----cEEEecCCCCCeeeeeccccCC------------------------ceEEE
Q 046871 84 VDWVNDAVLVGDN-TLVSCSS-DT-----TLKTWNCSSDGTCIRTLRQHSD------------------------YVTCL 132 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~-Dg-----~V~vWd~~~~~~~~~~l~~h~~------------------------~V~~l 132 (764)
...|.+++|+||| +|++++. |+ +|++||+ .+++....+..+.. .|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 4568999999998 7888888 88 8999997 44555555544432 37899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcccee
Q 046871 133 AAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIA 212 (764)
Q Consensus 133 ~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 212 (764)
+|+ +++++|++++. +.|++||+.++... ....
T Consensus 115 ~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~----------------------------------------------~~~~ 146 (741)
T 2ecf_A 115 QWS-PDAQRLLFPLG-GELYLYDLKQEGKA----------------------------------------------AVRQ 146 (741)
T ss_dssp EEC-TTSSEEEEEET-TEEEEEESSSCSTT----------------------------------------------SCCB
T ss_pred EEC-CCCCEEEEEeC-CcEEEEECCCCCcc----------------------------------------------eEEE
Confidence 999 78999988886 89999999864100 0112
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcC----------------eEEEEEcCCCCEEEE
Q 046871 213 AKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN----------------IRSLLLDSTGRYCLS 276 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~----------------V~~l~~spdg~~l~s 276 (764)
+..+...+.+++|+|||++|++++. +.|++||+.+++.......+... +.+++|+|||++|++
T Consensus 147 l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~ 225 (741)
T 2ecf_A 147 LTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY 225 (741)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred cccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence 3455677999999999999999874 68999999988766554444332 478999999999999
Q ss_pred EeCCC---------------------------------cEEEEeCCC-CeeeEEEe--eecCceEEEEEcCCCCEEEEec
Q 046871 277 GSSDS---------------------------------MIRLWDLGQ-QRCIHSYA--VHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 277 gs~Dg---------------------------------~I~iwdl~~-~~~~~~l~--~h~~~V~~l~~spd~~~l~sgs 320 (764)
++.|+ .|++||+.+ ++...... .|...+..++| |||++|+.++
T Consensus 226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence 88776 799999988 77655443 36778999999 9999998665
Q ss_pred C-----CCcEEEEeCCCCeEEEEeecCC-----CeEEEEeeCCc--eEEEeCCCcEEEeeCCC-CCCceeeecCCcceec
Q 046871 321 R-----DLSLYLTDLATRESLLLCTGEH-----PILQLALHDDN--IWVATTDSSVHRWPAEG-RNPQKVFQRGGSFIAG 387 (764)
Q Consensus 321 ~-----Dg~I~iwd~~~~~~~~~~~~~~-----~V~~l~~spd~--l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~ 387 (764)
. +..|++||+.+++....+.... .+..++|+||+ +++++.++.+++|.++. +. ...+.
T Consensus 305 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-------- 375 (741)
T 2ecf_A 305 QSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT-------- 375 (741)
T ss_dssp EETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC--------
T ss_pred ecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee--------
Confidence 3 5689999999998777665432 45689999999 67777888888887652 22 22211
Q ss_pred cccccccccccCCCCCcccCCCCCCccccCCCCceEe-EEecCCcEEE-EeeCCC--cEEEEEccc-cEEeeec
Q 046871 388 NLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQH-EILNNRRHVL-TKDAAG--SVKLWEITR-GVVVEDY 456 (764)
Q Consensus 388 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~-~~s~dg~~l~-t~s~dG--~V~lWdi~t-g~~i~~~ 456 (764)
.+...+..+ .|++||++|+ +++.++ .++||++.. |..++.+
T Consensus 376 ----------------------------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 376 ----------------------------HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp ----------------------------CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred ----------------------------ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 112234555 5999998775 455555 899999874 5545444
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=8.4e-20 Score=194.96 Aligned_cols=278 Identities=10% Similarity=0.053 Sum_probs=206.1
Q ss_pred cccceeEEEEeCCC-eEEEEeC-------CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCc-EEEEEeCCCeEEE
Q 046871 83 HVDWVNDAVLVGDN-TLVSCSS-------DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSN-IVASGGLGAEVFI 153 (764)
Q Consensus 83 h~~~V~~v~~s~d~-~l~s~s~-------Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~-~lasg~~dg~I~i 153 (764)
....+..++|++++ ++++++. ++.|.+||. .+++....+.. ...+..++|+ ++++ ++++...++.|.+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP-VTLEVTQAIHN-DLKPFGATIN-NTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT-TTCCEEEEEEE-SSCCCSEEEE-TTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC-CCCeEEEEEec-CCCcceEEEC-CCCCEEEEEecCCCEEEE
Confidence 34567889999997 6666664 568999997 45666666653 3457789999 5666 5566666899999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
||+.++....... ... .. .........+.+++|+|+|++++
T Consensus 116 ~d~~~~~~~~~~~------------------------------------~~~-~~--~~~~~~~~~~~~~~~s~dg~~l~ 156 (353)
T 3vgz_A 116 IDAKTGEVKGRLV------------------------------------LDD-RK--RTEEVRPLQPRELVADDATNTVY 156 (353)
T ss_dssp EETTTCCEEEEEE------------------------------------SCC-CC--CCSSCCCCEEEEEEEETTTTEEE
T ss_pred EeCCCCeeEEEEe------------------------------------cCC-Cc--cccccCCCCCceEEECCCCCEEE
Confidence 9998753211000 000 00 00001112368899999999887
Q ss_pred EEe--CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee----ecCceEEE
Q 046871 234 SGG--TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV----HTDSVWAL 307 (764)
Q Consensus 234 sgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~----h~~~V~~l 307 (764)
+++ .++.|.+||+.+++.+..+..+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.. +...+..+
T Consensus 157 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 236 (353)
T 3vgz_A 157 ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINI 236 (353)
T ss_dssp EEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEE
T ss_pred EEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceE
Confidence 765 478999999999999888876666789999999999999999999999999999998888775 45568899
Q ss_pred EEcCCCCEEEEecC-CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe-CCCcEEEeeCCCCCCceeeecCCc
Q 046871 308 ASTPTFSHVYSGGR-DLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT-TDSSVHRWPAEGRNPQKVFQRGGS 383 (764)
Q Consensus 308 ~~spd~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~ 383 (764)
+|+|++++++.++. ++.|.+||+.+++.+..+....+ ..++|+|++ ++++. .++.|.+||..+++....+..
T Consensus 237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--- 312 (353)
T 3vgz_A 237 SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--- 312 (353)
T ss_dssp EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---
Confidence 99999998776654 59999999999998877776554 579999998 66666 589999999988765544431
Q ss_pred ceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCC
Q 046871 384 FIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAG 440 (764)
Q Consensus 384 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG 440 (764)
...+..++|++||++|+.+..++
T Consensus 313 ----------------------------------~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 ----------------------------------PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ----------------------------------CSEEEEEEECTTSCEEEEEEECC
T ss_pred ----------------------------------CCCCCeEEEcCCCCEEEEEEccc
Confidence 12346778999999877766654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.3e-20 Score=197.66 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=199.4
Q ss_pred eEEEEeCCCcEEEecCCCCCeeeeeccccC-C-ceEEEEEecCCCc-EEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHS-D-YVTCLAAAEKNSN-IVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~-~-~V~~l~~~p~~~~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
++++++.+++|.+||+ .+++.+..+.... . .+.+++|+ ++++ +++++..++.|.+||+.++.....
T Consensus 3 ~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~--------- 71 (337)
T 1pby_B 3 YILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGR--------- 71 (337)
T ss_dssp EEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEE---------
T ss_pred EEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEee---------
Confidence 6889999999999997 4566666665322 1 47889999 5665 556667789999999976421100
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC---CCCcEEEEEEcCCCCEEEEEe------------CC
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG---HKESVYALAMNDSGNLLVSGG------------TE 238 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~V~~l~~sp~g~~l~sgs------------~d 238 (764)
..... +...+.+++|+|+|+++++++ .+
T Consensus 72 -------------------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 72 -------------------------------------IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp -------------------------------------EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred -------------------------------------EEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 00000 122456789999999998886 57
Q ss_pred CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEE
Q 046871 239 KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYS 318 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 318 (764)
+.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++ ++.|++||+.+++.+..+..+... ..+.|+|++..++.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEee
Confidence 9999999999888777764 4567889999999988888 688999999999988877654411 12378999987765
Q ss_pred ecCC-C-----------------------cEEEEeCCCCeEEEE--eecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 319 GGRD-L-----------------------SLYLTDLATRESLLL--CTGEHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 319 gs~D-g-----------------------~I~iwd~~~~~~~~~--~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
.+.+ + .|.+||+.+++.... ..+...+.+++|+|++ ++++ ++.|.+||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 4433 2 468999998876521 1234568899999999 5555 7999999998
Q ss_pred CCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEcccc
Q 046871 371 GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRG 450 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg 450 (764)
+++....+.. ...+..++|++||++|++++.++.|++||+.++
T Consensus 269 ~~~~~~~~~~-------------------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 269 KNASIKRVPL-------------------------------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTEEEEEEEC-------------------------------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCcCcceecC-------------------------------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 7765444321 123457889999999999999999999999999
Q ss_pred EEeeec
Q 046871 451 VVVEDY 456 (764)
Q Consensus 451 ~~i~~~ 456 (764)
+.++.+
T Consensus 312 ~~~~~~ 317 (337)
T 1pby_B 312 EKKGQV 317 (337)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 998877
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=5.6e-21 Score=225.34 Aligned_cols=326 Identities=11% Similarity=0.091 Sum_probs=219.6
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeeccccc---ceeEEEEeCCC-eEEEEeC---------CCcEEEecCCCC
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD---WVNDAVLVGDN-TLVSCSS---------DTTLKTWNCSSD 115 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~---~V~~v~~s~d~-~l~s~s~---------Dg~V~vWd~~~~ 115 (764)
+|||++++++ .||.|++||+.+ ++....+.+|.. .+.+++|+||| +|++++. +++|++||+ .+
T Consensus 24 s~dg~~~~~~-~d~~i~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~-~~ 99 (719)
T 1z68_A 24 ISGQEYLHQS-ADNNIVLYNIET--GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL-SN 99 (719)
T ss_dssp SSSSEEEEEC-TTSCEEEEESSS--CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET-TT
T ss_pred CCCCeEEEEc-CCCCEEEEEcCC--CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC-CC
Confidence 8999766654 699999999998 455555555544 49999999998 6777765 689999997 44
Q ss_pred Ceee--eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 116 GTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 116 ~~~~--~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
++.+ ..+ ...+..++|+ +|++.|+.+. ++.|++||+.++........
T Consensus 100 g~~~~~~~l---~~~~~~~~~S-PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~-------------------------- 148 (719)
T 1z68_A 100 GEFVRGNEL---PRPIQYLCWS-PVGSKLAYVY-QNNIYLKQRPGDPPFQITFN-------------------------- 148 (719)
T ss_dssp TEECCSSCC---CSSBCCEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCCC--------------------------
T ss_pred Cccccceec---CcccccceEC-CCCCEEEEEE-CCeEEEEeCCCCCcEEEecC--------------------------
Confidence 5542 222 2568889999 7888888875 78999999987532211000
Q ss_pred CCCcccccccCCCCccceeccCCC---------CcEEEEEEcCCCCEEEEEeCCC-------------------------
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHK---------ESVYALAMNDSGNLLVSGGTEK------------------------- 239 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~---------~~V~~l~~sp~g~~l~sgs~dg------------------------- 239 (764)
+.......++. ....+++|+|||++|++++.|.
T Consensus 149 -------------~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 149 -------------GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp -------------CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred -------------CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 00000011222 1225899999999999987652
Q ss_pred ---------eEEEEeCCCCcee--------EEeccCCcCeEEEEEcCCCCEEEEEeCC----CcEEEEe----CCCCeee
Q 046871 240 ---------VVRVWDPRTGSKT--------IKLRGHTDNIRSLLLDSTGRYCLSGSSD----SMIRLWD----LGQQRCI 294 (764)
Q Consensus 240 ---------~I~iwd~~~~~~~--------~~l~~h~~~V~~l~~spdg~~l~sgs~D----g~I~iwd----l~~~~~~ 294 (764)
.|++||+.+++.. ..+.+|...+.+++|+||++++++.... ..|.+|| +.++++.
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7899999887653 1234688889999999998777764432 2488999 8888776
Q ss_pred EEE----eeecCceE-----EEEEcCCCCEEEE--ecCCC--cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEe
Q 046871 295 HSY----AVHTDSVW-----ALASTPTFSHVYS--GGRDL--SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVAT 359 (764)
Q Consensus 295 ~~l----~~h~~~V~-----~l~~spd~~~l~s--gs~Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s 359 (764)
..+ ..|...+. .++|+|||+.|+. +..+| .|++||+.+++......+...+..+.++ ++ ++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEE
Confidence 655 46777776 8899999996653 44555 5778888877754444455567777777 55 55555
Q ss_pred CC-----CcEEEeeCCC--CCC-ceeeecCCcceeccccccccccccCCCCCcccCCCCCCcccc-CCCCceEeEEecCC
Q 046871 360 TD-----SSVHRWPAEG--RNP-QKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIP-GIPGIVQHEILNNR 430 (764)
Q Consensus 360 ~d-----g~I~iwd~~~--~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~-g~~~i~~~~~s~dg 430 (764)
.+ +.+++|.+.. +.. ...+.. .+. +...+....|++|+
T Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~~~l~~---------------------------------~~~~~~~~~~~~~~s~dg 421 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISIGSYPPSKKCVTC---------------------------------HLRKERCQYYTASFSDYA 421 (719)
T ss_dssp SCGGGCTTCBEEEEEECSSSSCCEEESST---------------------------------TTTTTTBCBEEEEECGGG
T ss_pred ecCCCCCceEEEEEEeCCCCCCCceeccC---------------------------------ccCCCCCceEEEEECCCC
Confidence 44 7888998753 211 011100 011 12345677899998
Q ss_pred cEEEE-eeCC--CcEEEEEccccEEeeec
Q 046871 431 RHVLT-KDAA--GSVKLWEITRGVVVEDY 456 (764)
Q Consensus 431 ~~l~t-~s~d--G~V~lWdi~tg~~i~~~ 456 (764)
++++. ++.+ ..+.+||+.+|++++.+
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp SSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred CEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 87764 3333 57899999999877665
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=3.9e-20 Score=217.58 Aligned_cols=279 Identities=11% Similarity=0.031 Sum_probs=201.2
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSS 114 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~ 114 (764)
..|.+++| ||| +.++.+. ++.|++||+.++ + ...+..+...+.+++|+||+ .|++ +.|+.|++|++..
T Consensus 82 ~~v~~~~~-----spd-~~~~~~~-~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLD-----AGR-GLVVLFT-QGGLVGFDMLAR--K-VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEE-----TTT-TEEEEEE-TTEEEEEETTTT--E-EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBC
T ss_pred cCceeEEE-----CCC-CeEEEEE-CCEEEEEECCCC--c-eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCc
Confidence 57999999 899 5555553 599999999873 3 34455677789999999998 5666 5789999999843
Q ss_pred C----CeeeeeccccCCc--------------eEEEEEecCCCcEEEEEeC-----------------------------
Q 046871 115 D----GTCIRTLRQHSDY--------------VTCLAAAEKNSNIVASGGL----------------------------- 147 (764)
Q Consensus 115 ~----~~~~~~l~~h~~~--------------V~~l~~~p~~~~~lasg~~----------------------------- 147 (764)
. ++.......+... +.+++|+ +|+++|++++.
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 1 4444433333332 4789999 78999988873
Q ss_pred ----CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEE
Q 046871 148 ----GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYAL 223 (764)
Q Consensus 148 ----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l 223 (764)
+..|++||+.++... .......+...+.++
T Consensus 230 ~~~~~~~l~~~d~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~ 263 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTV----------------------------------------------YLQTGEPKEKFLTNL 263 (706)
T ss_dssp SCCCEEEEEEEETTTTEEE----------------------------------------------ECCCCSCTTCEEEEE
T ss_pred CCCCeeEEEEEECCCCceE----------------------------------------------eeccCCCCceeEeeE
Confidence 234555555432100 001112456779999
Q ss_pred EEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEec-c-CCc---CeEEEEEcC--CCCEEEEEeCCCcEEEEeCC-C
Q 046871 224 AMNDSGNLLVSGGTEK-----VVRVWDPRTGSKTIKLR-G-HTD---NIRSLLLDS--TGRYCLSGSSDSMIRLWDLG-Q 290 (764)
Q Consensus 224 ~~sp~g~~l~sgs~dg-----~I~iwd~~~~~~~~~l~-~-h~~---~V~~l~~sp--dg~~l~sgs~Dg~I~iwdl~-~ 290 (764)
+|+|||++|++++.++ .|++||+.+++....+. . +.. .+.+++|+| ||+++++++.|+.++||++. +
T Consensus 264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~ 343 (706)
T 2z3z_A 264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT 343 (706)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT
T ss_pred EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC
Confidence 9999999999987775 89999999984443332 1 222 346789999 99999999999999999886 6
Q ss_pred CeeeEEEeeecCceEE-EEEcCCCCEEEEec-CCC----cEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCC-
Q 046871 291 QRCIHSYAVHTDSVWA-LASTPTFSHVYSGG-RDL----SLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTD- 361 (764)
Q Consensus 291 ~~~~~~l~~h~~~V~~-l~~spd~~~l~sgs-~Dg----~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~d- 361 (764)
+..+..+..|...+.. ++|+|+++.|+.++ .++ .|+.||+.+++ ...+.+...+.+++|+|++ ++..+.+
T Consensus 344 ~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECS
T ss_pred CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCC
Confidence 7778888888888877 79999999876544 444 67788887776 3444566779999999999 5444333
Q ss_pred ---CcEEEeeCCCCC
Q 046871 362 ---SSVHRWPAEGRN 373 (764)
Q Consensus 362 ---g~I~iwd~~~~~ 373 (764)
+.|++||+.+++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 569999998775
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.1e-19 Score=193.05 Aligned_cols=268 Identities=9% Similarity=0.073 Sum_probs=183.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCC-CcEEEEeCC--CCCCccceeecccccceeEEEEeCCC-eEEEEe-CCCcE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRD-GTLKRWSLA--DDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS-SDTTL 107 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~D-g~I~iWd~~--~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s-~Dg~V 107 (764)
.|...+.+++| +|++++|++++.+ +.|++|+++ ++....+..+..+. .+.+++|+|++ .+++++ .++.|
T Consensus 35 ~~~~~~~~~~~-----spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 35 DVPGQVQPMVV-----SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp ECSSCCCCEEE-----CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEE
T ss_pred ecCCCCceEEE-----CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeE
Confidence 36678889999 8999999998886 999999998 43333445555444 78999999997 565555 48899
Q ss_pred EEecCCCCC---eeeeeccccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCC-CCCCCCCCCCCcCCcCccccCCCC
Q 046871 108 KTWNCSSDG---TCIRTLRQHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEA-ALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 108 ~vWd~~~~~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
.+||+. .+ .....+..+ ..+.+++|+ ++++++++++ .++.|.+||+.+ +.....
T Consensus 109 ~~~d~~-~~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------------------ 167 (343)
T 1ri6_A 109 SVTRLE-DGLPVGVVDVVEGL-DGCHSANIS-PDNRTLWVPALKQDRICLFTVSDDGHLVAQ------------------ 167 (343)
T ss_dssp EEEEEE-TTEEEEEEEEECCC-TTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEEE------------------
T ss_pred EEEECC-CCccccccccccCC-CCceEEEEC-CCCCEEEEecCCCCEEEEEEecCCCceeee------------------
Confidence 999974 33 333444433 458899999 6777777766 899999999975 210000
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC--Cce--eEEec-
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPRT--GSK--TIKLR- 256 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~--~~~--~~~l~- 256 (764)
............+.+++|+|++++++++ ..++.|.+||+.. ++. ...+.
T Consensus 168 -------------------------~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 168 -------------------------DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp -------------------------EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred -------------------------cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence 0000011223467889999999977655 4789999999953 432 22222
Q ss_pred ---cC--CcCeEEEEEcCCCCEEEE-EeCCCcEEEEeCC----CCeeeEEEeeecCceEEEEEcCCCCEEEEec-CCCcE
Q 046871 257 ---GH--TDNIRSLLLDSTGRYCLS-GSSDSMIRLWDLG----QQRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSL 325 (764)
Q Consensus 257 ---~h--~~~V~~l~~spdg~~l~s-gs~Dg~I~iwdl~----~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I 325 (764)
++ ...+..++|+|+|++|++ +..++.|++||+. ..+.+..+..+.. +..++|+|++++|++++ .++.|
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence 11 235678999999998774 4578999999998 2345555554444 88999999999888777 68999
Q ss_pred EEEeC--CCCeE--EEEeecCCCeEEEEeeCC
Q 046871 326 YLTDL--ATRES--LLLCTGEHPILQLALHDD 353 (764)
Q Consensus 326 ~iwd~--~~~~~--~~~~~~~~~V~~l~~spd 353 (764)
.+|++ .+++. +..+.......+++|.++
T Consensus 302 ~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 302 SVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp EEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred EEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence 99954 46643 333333344556666553
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=1e-20 Score=223.15 Aligned_cols=279 Identities=7% Similarity=-0.027 Sum_probs=201.6
Q ss_pred ceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCC---ceEEEEEecCCCcEEEEEeCC---------CeEEE
Q 046871 86 WVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD---YVTCLAAAEKNSNIVASGGLG---------AEVFI 153 (764)
Q Consensus 86 ~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~---~V~~l~~~p~~~~~lasg~~d---------g~I~i 153 (764)
.+.+++|+||+.++..+.|++|++||+ .+++....+..|.. .|.+++|+ +|+++|++++.+ +.|.+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEEC-CCCcEEEEeccccccccccceEEEC-CCCCEEEEEecCccceeecceeeEEE
Confidence 467789999985555588999999997 45666666666664 48999999 789999988764 78889
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
||+.++... .+.....|...+..++|+|||+.|+
T Consensus 96 ~d~~~~~~~----------------------------------------------~l~~~~~~~~~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 96 SKIPHGDPQ----------------------------------------------SLDPPEVSNAKLQYAGWGPKGQQLI 129 (723)
T ss_dssp EESSSCCCE----------------------------------------------ECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred EECCCCceE----------------------------------------------eccCCccccccccccEECCCCCEEE
Confidence 999875210 0011223445578899999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeccCCcCe------------------EEEEEcCCCCEEEEEeCCC--------------
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLRGHTDNI------------------RSLLLDSTGRYCLSGSSDS-------------- 281 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V------------------~~l~~spdg~~l~sgs~Dg-------------- 281 (764)
.++. +.|++||+.+++.......+...+ .+++|+|||++|++++.|+
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence 9886 799999999988776655544433 7899999999999887653
Q ss_pred --------------------cEEEEeCCCCeeeEEEeee------cCceEEEEEcCCCCEEEEecC----CCcEEEEeCC
Q 046871 282 --------------------MIRLWDLGQQRCIHSYAVH------TDSVWALASTPTFSHVYSGGR----DLSLYLTDLA 331 (764)
Q Consensus 282 --------------------~I~iwdl~~~~~~~~l~~h------~~~V~~l~~spd~~~l~sgs~----Dg~I~iwd~~ 331 (764)
.|++||+.++++...+..+ ...+.+++|+|||+++++.+. +..|++||+.
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence 7999999988876677654 567899999999998876643 3579999999
Q ss_pred CCeEEEEeec--CCCe----EEEEeeCCc--eEE--EeCCC------cEEEee-CCCCCC--ceeeecCCcceecccccc
Q 046871 332 TRESLLLCTG--EHPI----LQLALHDDN--IWV--ATTDS------SVHRWP-AEGRNP--QKVFQRGGSFIAGNLSFS 392 (764)
Q Consensus 332 ~~~~~~~~~~--~~~V----~~l~~spd~--l~~--~s~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~~~~~~s 392 (764)
+++....... ...+ ..++|+||+ |+. +..++ .|.+|| ..++.. ...+.
T Consensus 289 ~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~------------- 355 (723)
T 1xfd_A 289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT------------- 355 (723)
T ss_dssp TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-------------
T ss_pred CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-------------
Confidence 9887665542 2333 378999999 554 34566 466666 333320 11111
Q ss_pred ccccccCCCCCcccCCCCCCccccCCCCceE-eEEecCCcEEEEeeCC---CcEEEEEccc
Q 046871 393 RARVSLEGSTPVSSRFKEPNFTIPGIPGIVQ-HEILNNRRHVLTKDAA---GSVKLWEITR 449 (764)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~-~~~s~dg~~l~t~s~d---G~V~lWdi~t 449 (764)
.+...+.. ++|+|||++|+..+.+ +.++||++..
T Consensus 356 -----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 356 -----------------------SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp -----------------------CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred -----------------------cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11222333 5899999999766555 8899999864
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=1.1e-20 Score=217.04 Aligned_cols=270 Identities=10% Similarity=0.041 Sum_probs=196.3
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeC-CCcEEEEeCCCCCCccceeecccc-cceeEEEEeCCCeEEEEeC---CCcEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSR-DGTLKRWSLADDVGSCSATFESHV-DWVNDAVLVGDNTLVSCSS---DTTLK 108 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~-Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~l~s~s~---Dg~V~ 108 (764)
+..+|.+++| ||||++||+++. ||+++||++++ +. ...+..|. ..+..++|+||..+++++. +....
T Consensus 20 ~~~~~~~~~~-----~~DG~~la~~s~~~g~~~lw~~~~--g~-~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 20 IAVEKYSLQG-----VVDGDKLLVVGFSEGSVNAYLYDG--GE-TVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHA 91 (582)
T ss_dssp HHSCEEEEEE-----EETTTEEEEEEEETTEEEEEEEET--TE-EEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEE
T ss_pred hccchheeec-----CCCCCeEEEEEccCCceeEEEEcC--CC-cEeeecccccccccccCCCCeEEEEeccCCCCcceE
Confidence 3557999999 799999999887 99999999865 33 44455555 6899999999955556654 45566
Q ss_pred EecCCC--CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 109 TWNCSS--DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 109 vWd~~~--~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+|.+.. .+... .+..+. .+...+|+|.....+++.+.++.+.+||+.++..
T Consensus 92 l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~------------------------- 144 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGL------------------------- 144 (582)
T ss_dssp EEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-------------------------
T ss_pred EEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-------------------------
Confidence 665433 33333 232222 2345677744334444444444566999876311
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeccCCcCe
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE----KVVRVWDPRTGSKTIKLRGHTDNI 262 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d----g~I~iwd~~~~~~~~~l~~h~~~V 262 (764)
.. +..+.. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|.+.+
T Consensus 145 -----------------------~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~ 197 (582)
T 3o4h_A 145 -----------------------RE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF 197 (582)
T ss_dssp -----------------------EE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred -----------------------EE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence 01 111222 789999999999988777 78999999888754 677888999
Q ss_pred EEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeeEEEeeecCceEEEE--------EcCCCCEEEEecCCCcEEEEeCCC
Q 046871 263 RSLLLDSTGRYCLSGSSDS--MIRLWDLGQQRCIHSYAVHTDSVWALA--------STPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg--~I~iwdl~~~~~~~~l~~h~~~V~~l~--------~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
..++|+|||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.|+.+++|++
T Consensus 198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 9999999999999888888 8999999998887 7777877777777 9999988899999999999999
Q ss_pred CeEEEEeecCCCeEEEEeeCCc--eEEEeCCC---cEEEeeCCC
Q 046871 333 RESLLLCTGEHPILQLALHDDN--IWVATTDS---SVHRWPAEG 371 (764)
Q Consensus 333 ~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg---~I~iwd~~~ 371 (764)
++... .....+.+++|+ ++ +++++.+. .+.+|+..+
T Consensus 275 g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 66554 234678899999 77 66666654 466666543
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=7.6e-20 Score=189.31 Aligned_cols=234 Identities=13% Similarity=0.033 Sum_probs=178.1
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCC-CCCccceeeccc-ccceeEEEEeCCC-eEEEEe--CCCcE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD-DVGSCSATFESH-VDWVNDAVLVGDN-TLVSCS--SDTTL 107 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~-~~~~~~~~l~~h-~~~V~~v~~s~d~-~l~s~s--~Dg~V 107 (764)
+|...|.+++| +|++++|++++ ++.|++||+.+ +. ....+..| ...|.+++|+|++ .|++++ .++.+
T Consensus 39 ~~~~~v~~~~~-----spdg~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 39 QTPELFEAPNW-----SPDGKYLLLNS-EGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EESSCCEEEEE-----CTTSSEEEEEE-TTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred cCCcceEeeEE-----CCCCCEEEEEc-CCeEEEEeCCCCCC--ceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 57889999999 89999999987 78999999987 43 23334444 4788999999997 777777 34566
Q ss_pred EEecCCCCCeeeeeccccCCceEEEEEecCCCcEEE-EEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 108 KTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVA-SGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
.||.+.........+..+. .+.+++|+ ++++.|+ +++.++.+++|+++...
T Consensus 111 ~l~~~~~~~~~~~~~~~~~-~~~~~~~s-pdg~~l~~~~~~~~~~~l~~~~~~~-------------------------- 162 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTKNL-PSYWHGWS-PDGKSFTYCGIRDQVFDIYSMDIDS-------------------------- 162 (297)
T ss_dssp EEEEEETTCCCCEECCSSS-SEEEEEEC-TTSSEEEEEEEETTEEEEEEEETTT--------------------------
T ss_pred eEEEEECCCCceEEeecCC-CccceEEC-CCCCEEEEEECCCCceEEEEEECCC--------------------------
Confidence 6665533333344554444 48899999 6676665 78889999999975310
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCceeEEeccCCcCeEE
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-TEKVVRVWDPR-TGSKTIKLRGHTDNIRS 264 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iwd~~-~~~~~~~l~~h~~~V~~ 264 (764)
.....+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+
T Consensus 163 ---------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 163 ---------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF 221 (297)
T ss_dssp ---------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred ---------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence 01122445677899999999999888766 58899999886 56667788888889999
Q ss_pred EEEcCCCCEEEEEeCC-----------CcEEEEeCCCCee--eEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 265 LLLDSTGRYCLSGSSD-----------SMIRLWDLGQQRC--IHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 265 l~~spdg~~l~sgs~D-----------g~I~iwdl~~~~~--~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
++|+|+|++|++++.+ +.|++||+.+++. +..+..|...+.+++|+|++++|++++.+.
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999999999988776 5699999988765 444557888999999999999998877653
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=3.1e-18 Score=182.77 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=187.8
Q ss_pred EEEEEe----CCCcEEEEeCCCCCCccce-eecccccceeEEEEeCCCeEEEEeC---CCcEEEecCCCCCe--eeeecc
Q 046871 54 YLFTGS----RDGTLKRWSLADDVGSCSA-TFESHVDWVNDAVLVGDNTLVSCSS---DTTLKTWNCSSDGT--CIRTLR 123 (764)
Q Consensus 54 ~L~sgs----~Dg~I~iWd~~~~~~~~~~-~l~~h~~~V~~v~~s~d~~l~s~s~---Dg~V~vWd~~~~~~--~~~~l~ 123 (764)
.+++|+ .++.|.+|+++...++... ....+...+..++|+|++.|++++. ++.|.+|++ ..+. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~-~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQI-DGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEe-cCCcEEEeeeee
Confidence 455553 3566888877653343322 3345567788899999986665554 689999998 3343 344445
Q ss_pred ccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 124 QHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
.+...+..++|+ +++++|++++ .++.|.+||+........ +... .
T Consensus 83 ~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~------------------------~~~~---------~ 128 (347)
T 3hfq_A 83 APGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTL------------------------TDTV---------Q 128 (347)
T ss_dssp EESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEE------------------------EEEE---------E
T ss_pred cCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeee------------------------ccee---------e
Confidence 577788999999 7788777777 789999999963210000 0000 0
Q ss_pred cCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeE--EeccC-CcCeEEEEEcCCCCEEEE-E
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR-TGSKTI--KLRGH-TDNIRSLLLDSTGRYCLS-G 277 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~-~~~~~~--~l~~h-~~~V~~l~~spdg~~l~s-g 277 (764)
.. +.... ...+...+.+++|+|+|+++++...++.|++||+. +++... .+..+ ...+..++|+|||+++++ +
T Consensus 129 ~~--~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~ 205 (347)
T 3hfq_A 129 HS--GHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG 205 (347)
T ss_dssp CC--CCCSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred cC--CCCCC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence 00 00000 11234568899999999977777778999999998 554322 22222 336788999999997665 5
Q ss_pred eCCCcEEEEeCCC--Cee--eEEEeeec------CceEEEEEcCCCCEEE-EecCCCcEEEEeCCCC---eEEEEeec-C
Q 046871 278 SSDSMIRLWDLGQ--QRC--IHSYAVHT------DSVWALASTPTFSHVY-SGGRDLSLYLTDLATR---ESLLLCTG-E 342 (764)
Q Consensus 278 s~Dg~I~iwdl~~--~~~--~~~l~~h~------~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~---~~~~~~~~-~ 342 (764)
..++.|++|++.. ++. +..+.... ..+..++|+|||++|+ +...++.|.+|++... +.+..+.. .
T Consensus 206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 285 (347)
T 3hfq_A 206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG 285 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence 5688999999864 543 23333222 3488999999999885 5556899999999732 33333433 4
Q ss_pred CCeEEEEeeCCc--eEEEeC-CCcEEEeeC--CCCCCc
Q 046871 343 HPILQLALHDDN--IWVATT-DSSVHRWPA--EGRNPQ 375 (764)
Q Consensus 343 ~~V~~l~~spd~--l~~~s~-dg~I~iwd~--~~~~~~ 375 (764)
..+..++|+|++ |++++. ++.|.+|++ .+++..
T Consensus 286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 568899999999 777775 489999954 455543
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.2e-18 Score=185.58 Aligned_cols=278 Identities=13% Similarity=0.085 Sum_probs=193.3
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccc-cceeEEEEeCCC-eE-EEEeCCCcEEEecCCCCCeeeeeccc
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHV-DWVNDAVLVGDN-TL-VSCSSDTTLKTWNCSSDGTCIRTLRQ 124 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~v~~s~d~-~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~ 124 (764)
+++++.++++++.++.|++||+.+ ++.+..+..+. ..+..++|+|++ .+ +++..++.|.+||+ .+++....+..
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~-~t~~~~~~~~~ 83 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL-DTCKNTFHANL 83 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET-TTTEEEEEEES
T ss_pred ccCCCEEEEEeCCCCeEEEEECCC--CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC-CCCcEEEEEEc
Confidence 478889999999999999999988 55566665443 257889999997 44 55567899999997 44666655542
Q ss_pred c------CCceEEEEEecCCCcEEEEEeCC------------CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 125 H------SDYVTCLAAAEKNSNIVASGGLG------------AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 125 h------~~~V~~l~~~p~~~~~lasg~~d------------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+ ...+.+++|+ ++++++++++.+ +.|.+||+.++.....
T Consensus 84 ~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---------------------- 140 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP---------------------- 140 (349)
T ss_dssp CCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC----------------------
T ss_pred ccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccce----------------------
Confidence 2 2237789999 788888888765 8999999976321100
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCc------
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD------ 260 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~------ 260 (764)
.... .+...+.+++|+|+|+ +++++. .|.+||+.+++.+..+..+..
T Consensus 141 -----------------------~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~ 193 (349)
T 1jmx_B 141 -----------------------VRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYS 193 (349)
T ss_dssp -----------------------SEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred -----------------------eeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcccc
Confidence 0111 1233578899999999 555544 499999999988777654320
Q ss_pred ------------------CeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCee-eEEEeeecCceEEEEEcC-CCCEEEEe
Q 046871 261 ------------------NIRSLLLDSTGRYCLSGSSD-SMIRLWDLGQQRC-IHSYAVHTDSVWALASTP-TFSHVYSG 319 (764)
Q Consensus 261 ------------------~V~~l~~spdg~~l~sgs~D-g~I~iwdl~~~~~-~~~l~~h~~~V~~l~~sp-d~~~l~sg 319 (764)
....+++++++......... ..+..+|..+++. ...+..+...+.+++|+| ++++++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~ 273 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 273 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE
Confidence 23456666554321111001 1122244444432 112233566788999999 99999988
Q ss_pred cCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 320 GRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
++.|.+||+.+++.+..+.....+.+++|+|++ |++++.++.|.+||+.+++.+..+..
T Consensus 274 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 274 --LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp --ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred --cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 889999999999988888777778899999998 88888899999999998887776653
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=4.1e-18 Score=183.02 Aligned_cols=286 Identities=10% Similarity=0.140 Sum_probs=187.3
Q ss_pred CCCcEEEEEe----CCCcEEEEeCCCCCCc--cceeecccccceeEEEEeCCC-eEEEEeCC----CcEEEecCCCC-Ce
Q 046871 50 NGVDYLFTGS----RDGTLKRWSLADDVGS--CSATFESHVDWVNDAVLVGDN-TLVSCSSD----TTLKTWNCSSD-GT 117 (764)
Q Consensus 50 ~d~~~L~sgs----~Dg~I~iWd~~~~~~~--~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D----g~V~vWd~~~~-~~ 117 (764)
++..+++.|+ .++.|.+|+++...++ .+..+ +...+..++|+|++ +|++++.+ +.|.+|++... +.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 3445677774 4578999987543333 33333 77788899999998 68888775 79999997543 33
Q ss_pred e--eeeccccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 118 C--IRTLRQHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 118 ~--~~~l~~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
. +.....+......+++ +++++++++ .++.|.+|++.............
T Consensus 89 ~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~------------------------- 140 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVI------------------------- 140 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-------------------------
T ss_pred EEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE-------------------------
Confidence 2 3333334556677777 466666555 68899999997532211100000
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce------e-------EEeccCCc
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-TEKVVRVWDPRTGSK------T-------IKLRGHTD 260 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iwd~~~~~~------~-------~~l~~h~~ 260 (764)
... +........+...+.+++|+|+|+++++++ .++.|++|++..... + .....+..
T Consensus 141 -------~~~--g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (361)
T 3scy_A 141 -------EFK--GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS 211 (361)
T ss_dssp -------ECC--CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred -------Ecc--CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence 000 000000122344578999999999766554 588999998765431 1 11223455
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCee--eEEEe---eecCceEEEEEcCCCCEEEEecCC--CcEEEEeCC-
Q 046871 261 NIRSLLLDSTGRYCLSGS-SDSMIRLWDLGQQRC--IHSYA---VHTDSVWALASTPTFSHVYSGGRD--LSLYLTDLA- 331 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs-~Dg~I~iwdl~~~~~--~~~l~---~h~~~V~~l~~spd~~~l~sgs~D--g~I~iwd~~- 331 (764)
.+..++|+|||+++++++ .++.|.+||+.+++. +..+. .+......++|+||+++|+++..+ +.|.+|++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 688999999999887777 689999999987754 33332 223457899999999999776654 899999996
Q ss_pred -CCe--EEEEeecCCCeEEEEeeCCc--eEEEe-CCCcEEEeeCC--CCCC
Q 046871 332 -TRE--SLLLCTGEHPILQLALHDDN--IWVAT-TDSSVHRWPAE--GRNP 374 (764)
Q Consensus 332 -~~~--~~~~~~~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~--~~~~ 374 (764)
+++ .+..+.....+.+++|+|++ |++++ .++.|.+|.++ +++.
T Consensus 292 ~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 292 TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp TTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 444 33334345568899999999 77776 57899997554 4443
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=3.9e-19 Score=204.12 Aligned_cols=267 Identities=9% Similarity=0.006 Sum_probs=190.5
Q ss_pred cccceeEEEEeCCC-eEEEEeC-CCcEEEecCCCCCeeeeeccccC-CceEEEEEecCCCcEEEEEeC---CCeEEEEeC
Q 046871 83 HVDWVNDAVLVGDN-TLVSCSS-DTTLKTWNCSSDGTCIRTLRQHS-DYVTCLAAAEKNSNIVASGGL---GAEVFIWDI 156 (764)
Q Consensus 83 h~~~V~~v~~s~d~-~l~s~s~-Dg~V~vWd~~~~~~~~~~l~~h~-~~V~~l~~~p~~~~~lasg~~---dg~I~iwdl 156 (764)
+..+|.+++|+||| +|++++. ||+++||++ ..+...+ +..|. ..+..++|+ ++ +++++++. +....+|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~-~~g~~~~-lt~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLY-DGGETVK-LNREPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEE-ETTEEEE-CCSSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEE-cCCCcEe-eecccccccccccCC-CC-eEEEEeccCCCCcceEEEEE
Confidence 35679999999997 7888776 999999997 4455444 44444 689999999 66 78887775 455666655
Q ss_pred CC--CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC--EE
Q 046871 157 EA--ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN--LL 232 (764)
Q Consensus 157 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~--~l 232 (764)
.. .. ... .+... ..+...+|+|+|+ .+
T Consensus 96 ~~~~~g-----------------------------------------------~~~-~l~~~-~~~~~~~~s~dg~~~~~ 126 (582)
T 3o4h_A 96 NTSRPG-----------------------------------------------EEQ-RLEAV-KPMRILSGVDTGEAVVF 126 (582)
T ss_dssp ETTSTT-----------------------------------------------CCE-ECTTS-CSBEEEEEEECSSCEEE
T ss_pred eccCCC-----------------------------------------------ccc-cccCC-CCceeeeeCCCCCeEEE
Confidence 42 10 000 01111 1223557777775 34
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeeeEEEeeecCceEEEE
Q 046871 233 VSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD----SMIRLWDLGQQRCIHSYAVHTDSVWALA 308 (764)
Q Consensus 233 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D----g~I~iwdl~~~~~~~~l~~h~~~V~~l~ 308 (764)
++++.+ .+.+||+.+++...... +.. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|.+.+..++
T Consensus 127 ~s~~~~-~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~ 201 (582)
T 3o4h_A 127 TGATED-RVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSAS 201 (582)
T ss_dssp EEECSS-CEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEE
T ss_pred EecCCC-CceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccce
Confidence 444444 45599999887655444 333 789999999999988877 78999999888754 6778888999999
Q ss_pred EcCCCCEEEEecCCC--cEEEEeCCCCeEEEEeecCCCeEEEE--------eeCCc--eEEEeCCCcEEEeeCCCCCCce
Q 046871 309 STPTFSHVYSGGRDL--SLYLTDLATRESLLLCTGEHPILQLA--------LHDDN--IWVATTDSSVHRWPAEGRNPQK 376 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~V~~l~--------~spd~--l~~~s~dg~I~iwd~~~~~~~~ 376 (764)
|+|||++|++++.++ .|++||+.+++......+...+..++ |+||+ +++++.++.+++|++ ++...
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 999999999888888 89999999988773223444555556 99999 677888999999998 32211
Q ss_pred eeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCC---cEEEEEccc
Q 046871 377 VFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAG---SVKLWEITR 449 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG---~V~lWdi~t 449 (764)
.. ...+..++|+ |++++++++.+. .|.+||..+
T Consensus 280 ~~---------------------------------------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 AP---------------------------------------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CC---------------------------------------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cC---------------------------------------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 00 1235577889 999999988875 477777654
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=3.2e-18 Score=182.72 Aligned_cols=253 Identities=13% Similarity=0.127 Sum_probs=177.0
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeC---CCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe-CCCcEE
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSR---DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS-SDTTLK 108 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~---Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s-~Dg~V~ 108 (764)
|...+..++| ||||+ |++++. ++.|++|++.++..+.+..+..+...+..++|+|++ +|++++ .+++|.
T Consensus 38 ~~~~p~~~a~-----spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 38 ATQNPTYLAL-----SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp ECSCCCCEEE-----CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred ccCCcceEEE-----ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 4456777888 89999 665554 689999999765444556666678889999999998 677777 679999
Q ss_pred EecCCCCCee--eeeccc---------cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 109 TWNCSSDGTC--IRTLRQ---------HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 109 vWd~~~~~~~--~~~l~~---------h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
+|++..++.. +..+.. +...+.+++|+ ++++++++...++.|.+||+.......
T Consensus 112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~~~~~g~~~-------------- 176 (347)
T 3hfq_A 112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYNVSDAGQLS-------------- 176 (347)
T ss_dssp EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEEECTTSCEE--------------
T ss_pred EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEEEEEEECCCCcEE--------------
Confidence 9998544332 222211 12348899999 566777777778899999997310000
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCC--Cce--e
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEKVVRVWDPRT--GSK--T 252 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg~I~iwd~~~--~~~--~ 252 (764)
............+..++|+|+|+++++ +..++.|.+|++.. ++. +
T Consensus 177 ------------------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 177 ------------------------------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp ------------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ------------------------------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 000001112235678999999996665 56788999999874 442 2
Q ss_pred EEeccCC------cCeEEEEEcCCCCEEE-EEeCCCcEEEEeCC---CCeeeEEEeeecCceEEEEEcCCCCEEEEecC-
Q 046871 253 IKLRGHT------DNIRSLLLDSTGRYCL-SGSSDSMIRLWDLG---QQRCIHSYAVHTDSVWALASTPTFSHVYSGGR- 321 (764)
Q Consensus 253 ~~l~~h~------~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl~---~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~- 321 (764)
..+.... ..+..++|+|||++|+ +...++.|.+|++. ..+.+..+..+...+..++|+|++++|++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 2333222 3488999999999874 55568999999997 33556666666667899999999999887765
Q ss_pred CCcEEEE--eCCCCeEEE
Q 046871 322 DLSLYLT--DLATRESLL 337 (764)
Q Consensus 322 Dg~I~iw--d~~~~~~~~ 337 (764)
++.|.+| |..+++...
T Consensus 307 ~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 307 TDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTEEEEEEECTTTCCEEE
T ss_pred CCcEEEEEEeCCCCeEEe
Confidence 4899999 555666553
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.5e-18 Score=189.26 Aligned_cols=223 Identities=10% Similarity=0.041 Sum_probs=163.6
Q ss_pred CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCC-------C--eeee-----eccccC
Q 046871 62 GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSD-------G--TCIR-----TLRQHS 126 (764)
Q Consensus 62 g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~-------~--~~~~-----~l~~h~ 126 (764)
+.|++|+... . .+...++.+++++++ .+++++.|+ +++|+.... . .... ....|.
T Consensus 23 ~~vri~~~~~---~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPE---E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCS---S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCcc---c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence 4688886532 1 123457889999885 888888887 888763110 0 0010 011355
Q ss_pred CceEEEEEecCCCcEEE----EEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 127 DYVTCLAAAEKNSNIVA----SGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 127 ~~V~~l~~~p~~~~~la----sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
..|.+++|+ +++++|+ +|+.|+.|++||+.+........
T Consensus 93 ~~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~------------------------------------ 135 (434)
T 2oit_A 93 FPIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ------------------------------------ 135 (434)
T ss_dssp SCEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS------------------------------------
T ss_pred CcccEEEEc-CCCCEEEEEEeccCCCceEEEEEccccccCCcCC------------------------------------
Confidence 679999999 7788888 78889999999987531000000
Q ss_pred cCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCC
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS 281 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg 281 (764)
...-.....+.+|...|.+++|+|+ +++|++++.||.|++||++++..+....+|...|.+++|+|+|++|++|+.||
T Consensus 136 -~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg 214 (434)
T 2oit_A 136 -KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG 214 (434)
T ss_dssp -CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS
T ss_pred -cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC
Confidence 0000112335678999999999997 89999999999999999999977777778999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEeeec-------CceEEEEEcCCCCEEEE-ecCCC------cEEEEeCCCC
Q 046871 282 MIRLWDLGQQRCIHSYAVHT-------DSVWALASTPTFSHVYS-GGRDL------SLYLTDLATR 333 (764)
Q Consensus 282 ~I~iwdl~~~~~~~~l~~h~-------~~V~~l~~spd~~~l~s-gs~Dg------~I~iwd~~~~ 333 (764)
+|++||++ ++....+..|. ..|.+++|++++.++++ .+.|| .+++|++...
T Consensus 215 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 215 TVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999998 66666665443 37999999998887754 33343 3899999754
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=2.3e-17 Score=177.18 Aligned_cols=275 Identities=10% Similarity=0.076 Sum_probs=179.8
Q ss_pred CCCCeeEEEeecccccCCCcEEEEEeCC----CcEEEEeCCCC--CCccceeecccccceeEEEEeCCCeEEEEe-CCCc
Q 046871 34 HCAGINCLAVLKSSVSNGVDYLFTGSRD----GTLKRWSLADD--VGSCSATFESHVDWVNDAVLVGDNTLVSCS-SDTT 106 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~~L~sgs~D----g~I~iWd~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s-~Dg~ 106 (764)
|......++| ||||++|++++.+ +.|.+|+++.. ..+.+.....+......+++ ..++|++++ .+++
T Consensus 48 ~~~~p~~l~~-----spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 48 EVANPSYLIP-----SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGS 121 (361)
T ss_dssp ECSCCCSEEE-----CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTE
T ss_pred cCCCCceEEE-----CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCE
Confidence 4455666777 8999999999886 89999998763 22334444445666777887 334565555 6889
Q ss_pred EEEecCCCCCeeeee-----c--------cccCCceEEEEEecCCCcEEEE-EeCCCeEEEEeCCCCCCCCCCCCCCcCC
Q 046871 107 LKTWNCSSDGTCIRT-----L--------RQHSDYVTCLAAAEKNSNIVAS-GGLGAEVFIWDIEAALAPSKSGDAMEDD 172 (764)
Q Consensus 107 V~vWd~~~~~~~~~~-----l--------~~h~~~V~~l~~~p~~~~~las-g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 172 (764)
|.+|++...+..... . ..+...+.+++|+ ++++++++ +..++.|.+|++.........
T Consensus 122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~------- 193 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNK------- 193 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTC-------
T ss_pred EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccc-------
Confidence 999998544332111 0 1122346889999 67775554 445889999998753110000
Q ss_pred cCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce
Q 046871 173 CSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-TEKVVRVWDPRTGSK 251 (764)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iwd~~~~~~ 251 (764)
.. +... +........+...+..++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 194 ---------~~--------------l~~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 194 ---------EK--------------FLTK-----GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp ---------CC--------------CEEE-----EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred ---------cc--------------eeec-----ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 00 0000 000011122345578999999999887776 689999999987754
Q ss_pred --eEEe---ccCCcCeEEEEEcCCCCEEEEEeCC--CcEEEEeCC--CCe--eeEEEeeecCceEEEEEcCCCCEEEEec
Q 046871 252 --TIKL---RGHTDNIRSLLLDSTGRYCLSGSSD--SMIRLWDLG--QQR--CIHSYAVHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 252 --~~~l---~~h~~~V~~l~~spdg~~l~sgs~D--g~I~iwdl~--~~~--~~~~l~~h~~~V~~l~~spd~~~l~sgs 320 (764)
+..+ ..+......++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|++++|++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence 2222 2333557899999999998776654 899999985 344 4444444 45688999999999888777
Q ss_pred -CCCcEEEE--eCCCCeEEEEee--cCCCeEEEEee
Q 046871 321 -RDLSLYLT--DLATRESLLLCT--GEHPILQLALH 351 (764)
Q Consensus 321 -~Dg~I~iw--d~~~~~~~~~~~--~~~~V~~l~~s 351 (764)
.++.|.+| |..+++...... +...+.|+.|.
T Consensus 325 ~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 325 RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 67899996 555776655432 33468888886
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=2.8e-18 Score=182.61 Aligned_cols=233 Identities=9% Similarity=0.042 Sum_probs=170.8
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 132 LAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 132 l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
++++ +++.++++++.++.|.+||+.++... .
T Consensus 5 ~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~------------------------------------------------~ 35 (349)
T 1jmx_B 5 PALK-AGHEYMIVTNYPNNLHVVDVASDTVY------------------------------------------------K 35 (349)
T ss_dssp CCCC-TTCEEEEEEETTTEEEEEETTTTEEE------------------------------------------------E
T ss_pred cccc-CCCEEEEEeCCCCeEEEEECCCCcEE------------------------------------------------E
Confidence 4566 67889999999999999999864211 1
Q ss_pred eccCC-CCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCC------cCeEEEEEcCCCCEEEEEeCC---
Q 046871 212 AAKGH-KESVYALAMNDSGNLLV-SGGTEKVVRVWDPRTGSKTIKLRGHT------DNIRSLLLDSTGRYCLSGSSD--- 280 (764)
Q Consensus 212 ~~~~~-~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~l~sgs~D--- 280 (764)
.+..+ ...+..++|+|+|++++ ++..++.|.+||+.+++.+..+..+. ..+..++|+|||++|++++.+
T Consensus 36 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 115 (349)
T 1jmx_B 36 SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR 115 (349)
T ss_dssp EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEE
T ss_pred EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccc
Confidence 11111 12467899999998655 55678999999999998887765332 237889999999999998865
Q ss_pred ---------CcEEEEeCCCCe---eeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCC-----
Q 046871 281 ---------SMIRLWDLGQQR---CIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEH----- 343 (764)
Q Consensus 281 ---------g~I~iwdl~~~~---~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----- 343 (764)
+.|.+||+.+++ .+..+. +...+.+++|+|+++ ++.++. .|++||+.+++.+..+....
T Consensus 116 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~ 191 (349)
T 1jmx_B 116 LNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKG 191 (349)
T ss_dssp CSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTT
T ss_pred cccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcc
Confidence 899999998844 334444 334688999999999 666544 49999999888766544221
Q ss_pred ----------------------------------------------------------------CeEEEEeeC-Cc--eE
Q 046871 344 ----------------------------------------------------------------PILQLALHD-DN--IW 356 (764)
Q Consensus 344 ----------------------------------------------------------------~V~~l~~sp-d~--l~ 356 (764)
.+..++++| ++ ++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence 234566677 77 44
Q ss_pred EEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEe
Q 046871 357 VATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTK 436 (764)
Q Consensus 357 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~ 436 (764)
++ ++.|.+||+.+++....+.. ...+..++|++||++|+++
T Consensus 272 ~~--~~~v~~~d~~~~~~~~~~~~-------------------------------------~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 272 GV--LNRLAKYDLKQRKLIKAANL-------------------------------------DHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp EE--ESEEEEEETTTTEEEEEEEC-------------------------------------SSCCCEEEECSSSSCEEEE
T ss_pred EE--cCeEEEEECccCeEEEEEcC-------------------------------------CCCccceEECCCCCEEEEe
Confidence 44 77888888877654443321 1224578899999999888
Q ss_pred eCCCcEEEEEccccEEeeec
Q 046871 437 DAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 437 s~dG~V~lWdi~tg~~i~~~ 456 (764)
+.++.|++||+.+++.++.+
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEeccccceeeee
Confidence 88999999999999999877
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=1.8e-18 Score=190.40 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=164.1
Q ss_pred CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 105 TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 105 g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
+.+++|+. . .. .....+..++++ +++.++++++.++ +++|+............
T Consensus 23 ~~vri~~~-~-~~------~~~~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~----------------- 75 (434)
T 2oit_A 23 KKVRIFDS-P-EE------LPKERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGD----------------- 75 (434)
T ss_dssp CEEECSCC-C-SS------CCCSCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-----------------
T ss_pred eeEEecCC-c-cc------cCCCCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhccccc-----------------
Confidence 56899874 1 11 123467889999 6788999999888 99988753211000000
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE----EEeCCCeEEEEeCCCC--------ce-
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV----SGGTEKVVRVWDPRTG--------SK- 251 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~----sgs~dg~I~iwd~~~~--------~~- 251 (764)
....... ........+...|++++|+|+|++|+ +|+.|+.|++||++++ +.
T Consensus 76 -----------~~~~~~~-----~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~ 139 (434)
T 2oit_A 76 -----------DPNKIVD-----KVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPF 139 (434)
T ss_dssp -----------CTTCEEE-----CCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCS
T ss_pred -----------Ccccccc-----cCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCccee
Confidence 0000000 00011224567899999999999999 7888999999998654 22
Q ss_pred --eEEeccCCcCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEE
Q 046871 252 --TIKLRGHTDNIRSLLLDST-GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLT 328 (764)
Q Consensus 252 --~~~l~~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iw 328 (764)
+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+.....|...|++++|+|++++|++|+.||.|++|
T Consensus 140 ~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw 219 (434)
T 2oit_A 140 AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219 (434)
T ss_dssp EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE
Confidence 4556779999999999998 8899999999999999999998877777899999999999999999999999999999
Q ss_pred eCCCCeEEEEee-c-------CCCeEEEEeeCCc-eEE--EeCCC------cEEEeeCCCC
Q 046871 329 DLATRESLLLCT-G-------EHPILQLALHDDN-IWV--ATTDS------SVHRWPAEGR 372 (764)
Q Consensus 329 d~~~~~~~~~~~-~-------~~~V~~l~~spd~-l~~--~s~dg------~I~iwd~~~~ 372 (764)
|++ ++....+. + ...|.+++|++++ +++ ++.+| .+++|++...
T Consensus 220 d~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 220 LPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 998 44444332 1 1278999999998 332 33443 3899999764
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=1.1e-17 Score=197.62 Aligned_cols=338 Identities=9% Similarity=0.058 Sum_probs=217.6
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccc-----eeEEEEeCCC-eEEEEeCC----
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDW-----VNDAVLVGDN-TLVSCSSD---- 104 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~-----V~~v~~s~d~-~l~s~s~D---- 104 (764)
.....+++| +|||++|+++ ||.|++||+.+ +++...+.+|... ..++.|+||+ +|+.++.+
T Consensus 16 ~~~~~~~~w-----~~dg~~~~~~--~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 16 RLKLYSLRW-----ISDHEYLYKQ--ENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCCCEEE-----CSSSEEEEEE--TTEEEEEETTT--CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccccccEE-----CCCCcEEEEc--CCcEEEEECCC--CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 344667788 7999999986 89999999998 4555666776543 2447899998 67777765
Q ss_pred -----CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 105 -----TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 105 -----g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
+.+.+||+ .+++. ..+..|...+...+|+ ||++.||.+. ++.|++||+.++.........
T Consensus 87 r~~~~~~~~~~d~-~~~~~-~~l~~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g----------- 151 (740)
T 4a5s_A 87 RHSYTASYDIYDL-NKRQL-ITEERIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG----------- 151 (740)
T ss_dssp SSCEEEEEEEEET-TTTEE-CCSSCCCTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSCC-----------
T ss_pred EEccceEEEEEEC-CCCcE-EEcccCCCcceeeEEC-CCCCEEEEEE-CCeEEEEECCCCceEEEcCCC-----------
Confidence 56779997 44554 4566778889999999 7888888874 689999999875322110000
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCC---------CcEEEEEEcCCCCEEEEEeCCC-----------
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK---------ESVYALAMNDSGNLLVSGGTEK----------- 239 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~V~~l~~sp~g~~l~sgs~dg----------- 239 (764)
.......++. +...++.|+|||+.|+.++.|.
T Consensus 152 ----------------------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 152 ----------------------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp ----------------------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred ----------------------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEee
Confidence 0000011111 2223578999999888764221
Q ss_pred -------------------------eEEEEeCCC---Cc--eeEEec------cCCcCeEEEEEcCCCCEEEEEeC----
Q 046871 240 -------------------------VVRVWDPRT---GS--KTIKLR------GHTDNIRSLLLDSTGRYCLSGSS---- 279 (764)
Q Consensus 240 -------------------------~I~iwd~~~---~~--~~~~l~------~h~~~V~~l~~spdg~~l~sgs~---- 279 (764)
.|++||+.+ ++ ....+. +|...+..++|+|||+.++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~ 283 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence 588899988 73 233343 37778999999999997665533
Q ss_pred CCcEEEEeCCCCe----eeE--EE--eeecCceE-----EEEEcCCCCEEE-Eec-CCC--cEEEEeCCCCeEEEEeecC
Q 046871 280 DSMIRLWDLGQQR----CIH--SY--AVHTDSVW-----ALASTPTFSHVY-SGG-RDL--SLYLTDLATRESLLLCTGE 342 (764)
Q Consensus 280 Dg~I~iwdl~~~~----~~~--~l--~~h~~~V~-----~l~~spd~~~l~-sgs-~Dg--~I~iwd~~~~~~~~~~~~~ 342 (764)
+..|++||+.+++ |.. ++ ..|...|. .++|+|||+.|+ ..+ .+| .|++||+.+++...+..+.
T Consensus 284 ~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~ 363 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT 363 (740)
T ss_dssp EEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS
T ss_pred EEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC
Confidence 3479999998887 332 22 34555554 788999999876 554 343 6888999888777666666
Q ss_pred CCeEEEEeeCCc-eE-EEeC----CCcEEEeeCC--CCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCcc
Q 046871 343 HPILQLALHDDN-IW-VATT----DSSVHRWPAE--GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFT 414 (764)
Q Consensus 343 ~~V~~l~~spd~-l~-~~s~----dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 414 (764)
..+..+..-.++ ++ +++. .+..++|.+. ++.....+. .. +
T Consensus 364 ~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt-----------~~--------------~------- 411 (740)
T 4a5s_A 364 WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS-----------CE--------------L------- 411 (740)
T ss_dssp SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS-----------TT--------------T-------
T ss_pred EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec-----------cc--------------c-------
Confidence 666665432233 44 4443 2344555432 211100100 00 0
Q ss_pred ccCCCCceEeEEecCCcEEEEeeC---CCcEEEEEccccEEeeec
Q 046871 415 IPGIPGIVQHEILNNRRHVLTKDA---AGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 415 i~g~~~i~~~~~s~dg~~l~t~s~---dG~V~lWdi~tg~~i~~~ 456 (764)
.....+.....|++|+++++.... -..+.+++..+++.+..+
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 001234677899999998764433 247889999888776655
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=204.22 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=189.6
Q ss_pred EEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCC---ceEEEEEecCCCcEEEEEeC---------CCeEEEEeC
Q 046871 89 DAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD---YVTCLAAAEKNSNIVASGGL---------GAEVFIWDI 156 (764)
Q Consensus 89 ~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~---~V~~l~~~p~~~~~lasg~~---------dg~I~iwdl 156 (764)
++.|+|++.++..+.|++|++||+ .+++....+..|.. .+.+++|+ +|+++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEc-CCCcEEEEEccccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 679999997777778999999997 45666666665543 38899999 78999988876 789999999
Q ss_pred CCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe
Q 046871 157 EAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG 236 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs 236 (764)
.++..... ..+ ...+..++|+|||+.|+.+.
T Consensus 98 ~~g~~~~~----------------------------------------------~~l---~~~~~~~~~SPDG~~la~~~ 128 (719)
T 1z68_A 98 SNGEFVRG----------------------------------------------NEL---PRPIQYLCWSPVGSKLAYVY 128 (719)
T ss_dssp TTTEECCS----------------------------------------------SCC---CSSBCCEEECSSTTCEEEEE
T ss_pred CCCccccc----------------------------------------------eec---CcccccceECCCCCEEEEEE
Confidence 87532100 001 13477899999999999885
Q ss_pred CCCeEEEEeCCCCceeEEe-ccCCcCe-----------------EEEEEcCCCCEEEEEeCCC-----------------
Q 046871 237 TEKVVRVWDPRTGSKTIKL-RGHTDNI-----------------RSLLLDSTGRYCLSGSSDS----------------- 281 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~~~l-~~h~~~V-----------------~~l~~spdg~~l~sgs~Dg----------------- 281 (764)
++.|++||+.+++..... .++...| .+++|||||++|++++.|.
T Consensus 129 -~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 129 -QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp -TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred -CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 789999999888765432 2332222 4899999999999988652
Q ss_pred -----------------cEEEEeCCCCeee---E-----EEeeecCceEEEEEcCCCCEEEEecCC----CcEEEEe---
Q 046871 282 -----------------MIRLWDLGQQRCI---H-----SYAVHTDSVWALASTPTFSHVYSGGRD----LSLYLTD--- 329 (764)
Q Consensus 282 -----------------~I~iwdl~~~~~~---~-----~l~~h~~~V~~l~~spd~~~l~sgs~D----g~I~iwd--- 329 (764)
.|++||+.+++.. . .+..|...+.+++|+||++++++.... ..|++||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999887753 1 133577789999999998877774432 3488999
Q ss_pred -CCCCeEEEEe-----ecCCCeE-----EEEeeCCc--eEE--EeCCC--cEEEeeCCCCCCceeeecCCcceecccccc
Q 046871 330 -LATRESLLLC-----TGEHPIL-----QLALHDDN--IWV--ATTDS--SVHRWPAEGRNPQKVFQRGGSFIAGNLSFS 392 (764)
Q Consensus 330 -~~~~~~~~~~-----~~~~~V~-----~l~~spd~--l~~--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s 392 (764)
+.+++..... .+...+. .+.|+||+ ++. ...++ .|.+|++.+++. ..+.
T Consensus 288 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt------------- 353 (719)
T 1z68_A 288 DWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT------------- 353 (719)
T ss_dssp SSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS-------------
T ss_pred CCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc-------------
Confidence 8887766554 2344455 78999998 444 33455 466667665442 1111
Q ss_pred ccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCC-----CcEEEEEccc
Q 046871 393 RARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAA-----GSVKLWEITR 449 (764)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~d-----G~V~lWdi~t 449 (764)
.+...+....++ |++.|+..+.+ +.+++|.+..
T Consensus 354 -----------------------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 354 -----------------------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -----------------------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -----------------------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 112224455566 77777666554 8899998864
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.7e-17 Score=179.81 Aligned_cols=284 Identities=10% Similarity=-0.003 Sum_probs=188.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeC-CCc--EEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEE
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSR-DGT--LKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLK 108 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~-Dg~--I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~ 108 (764)
.|.......-+...+|||||++|+.++. +|. |.+||+.+ ++......+|...+..+.|+||+ .|+.++.++.|+
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~ 105 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM 105 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEE
Confidence 3444444433333445999999998887 674 88888887 45555556666666678899998 888999899999
Q ss_pred EecCCCCCeeeeeccccCCceEEEEE--ecCCCcEEEEEe----------------------CCCeEEEEeCCCCCCCCC
Q 046871 109 TWNCSSDGTCIRTLRQHSDYVTCLAA--AEKNSNIVASGG----------------------LGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 109 vWd~~~~~~~~~~l~~h~~~V~~l~~--~p~~~~~lasg~----------------------~dg~I~iwdl~~~~~~~~ 164 (764)
+||+. +++....+..+...+....| + +++.+++... .+..|.+||+.++.
T Consensus 106 ~~d~~-~g~~~~~~~~~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---- 179 (388)
T 3pe7_A 106 RVDLA-TLEENVVYQVPAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---- 179 (388)
T ss_dssp EEETT-TCCEEEEEECCTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----
T ss_pred EEECC-CCcceeeeechhhcccccceeEC-CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----
Confidence 99984 45555555555555544443 5 6777776421 33567777766531
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCC-----
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTE----- 238 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~d----- 238 (764)
...+..+...+..++|+| +|+.|+....+
T Consensus 180 ---------------------------------------------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (388)
T 3pe7_A 180 ---------------------------------------------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLV 214 (388)
T ss_dssp ---------------------------------------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTS
T ss_pred ---------------------------------------------eEEeecCCccccccEECCCCCCEEEEEEecCCCCC
Confidence 122334456688999999 99998877653
Q ss_pred -CeEEEEeCCCCceeEEeccCC--cCeEEEEEcCCCCEEEEEeC-CC----cEEEEeCCCCeeeE--EEeeecCc---eE
Q 046871 239 -KVVRVWDPRTGSKTIKLRGHT--DNIRSLLLDSTGRYCLSGSS-DS----MIRLWDLGQQRCIH--SYAVHTDS---VW 305 (764)
Q Consensus 239 -g~I~iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~l~sgs~-Dg----~I~iwdl~~~~~~~--~l~~h~~~---V~ 305 (764)
..|.++|...++. ..+..+. ..+....|+|||+.|+..+. ++ .|++||+.+++... .+..+... ..
T Consensus 215 ~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 293 (388)
T 3pe7_A 215 DARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYD 293 (388)
T ss_dssp SCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTT
T ss_pred cceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCC
Confidence 3788888765543 4444444 35788999999998765443 22 39999999887432 33321111 11
Q ss_pred EEEEcCCCCEEEEe---------cCCCcEEEEeCCCCeEEEEeecCC-----------CeEEEEeeCCc--eEEEe-CCC
Q 046871 306 ALASTPTFSHVYSG---------GRDLSLYLTDLATRESLLLCTGEH-----------PILQLALHDDN--IWVAT-TDS 362 (764)
Q Consensus 306 ~l~~spd~~~l~sg---------s~Dg~I~iwd~~~~~~~~~~~~~~-----------~V~~l~~spd~--l~~~s-~dg 362 (764)
.++|+|||+.|+.. ..+..|++||+.+++......+.. .+.+++|+||+ |+.++ .++
T Consensus 294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g 373 (388)
T 3pe7_A 294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG 373 (388)
T ss_dssp SSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC
Confidence 23689999988743 456789999999988766665554 57889999999 55444 567
Q ss_pred cEEEeeCC
Q 046871 363 SVHRWPAE 370 (764)
Q Consensus 363 ~I~iwd~~ 370 (764)
...+|.++
T Consensus 374 ~~~l~~~~ 381 (388)
T 3pe7_A 374 KPALYLAT 381 (388)
T ss_dssp SCEEEEEE
T ss_pred ceeEEEEE
Confidence 77777554
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=1.1e-16 Score=173.46 Aligned_cols=302 Identities=12% Similarity=0.007 Sum_probs=194.4
Q ss_pred EeCCCCCCccceeecccccceeE-----EEEeCCC-eEEEEeC-CCc--EEEecCCCCCeeeeeccccCCceEEEEEecC
Q 046871 67 WSLADDVGSCSATFESHVDWVND-----AVLVGDN-TLVSCSS-DTT--LKTWNCSSDGTCIRTLRQHSDYVTCLAAAEK 137 (764)
Q Consensus 67 Wd~~~~~~~~~~~l~~h~~~V~~-----v~~s~d~-~l~s~s~-Dg~--V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~ 137 (764)
+|..+ +.....+..|...... .+|+||+ +|+.++. ++. |.+||+ .+++.......+...+..++|+ +
T Consensus 15 ~~~~~--g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~s-p 90 (388)
T 3pe7_A 15 QDAST--GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLS-P 90 (388)
T ss_dssp ECTTT--CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEEC-T
T ss_pred ecCCC--CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEc-C
Confidence 35554 5556777777655555 7899998 6777776 664 788886 4566666666666666567899 7
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCC
Q 046871 138 NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK 217 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 217 (764)
+++.|+.++.++.|++||+.++... .....+.
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~------------------------------------------------~~~~~~~ 122 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEEN------------------------------------------------VVYQVPA 122 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE------------------------------------------------EEEECCT
T ss_pred CCCEEEEEeCCCeEEEEECCCCcce------------------------------------------------eeeechh
Confidence 8999999999999999999874211 1122223
Q ss_pred CcEEEE--EEcCCCCEEEEE----------------------eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCC
Q 046871 218 ESVYAL--AMNDSGNLLVSG----------------------GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGR 272 (764)
Q Consensus 218 ~~V~~l--~~sp~g~~l~sg----------------------s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~ 272 (764)
..+... .+++++.+++.. ..+..|.+||+.+++.. .+..+...+..+.|+| ||+
T Consensus 123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~ 201 (388)
T 3pe7_A 123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDS 201 (388)
T ss_dssp TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEE
T ss_pred hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCC
Confidence 333322 347888887742 24468999999988654 4445677899999999 999
Q ss_pred EEEEEeCC------CcEEEEeCCCCeeeEEEeeec--CceEEEEEcCCCCEEEEecC-CC----cEEEEeCCCCeEEEEe
Q 046871 273 YCLSGSSD------SMIRLWDLGQQRCIHSYAVHT--DSVWALASTPTFSHVYSGGR-DL----SLYLTDLATRESLLLC 339 (764)
Q Consensus 273 ~l~sgs~D------g~I~iwdl~~~~~~~~l~~h~--~~V~~l~~spd~~~l~sgs~-Dg----~I~iwd~~~~~~~~~~ 339 (764)
.|+.++.+ ..|.++|+..++ ...+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++.....
T Consensus 202 ~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (388)
T 3pe7_A 202 TVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT 280 (388)
T ss_dssp EEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred EEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence 98877653 378888876554 34444444 35788999999998765432 22 3999999998755443
Q ss_pred ecCCC------eEEEEeeCCc--eEEE---------eCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCC
Q 046871 340 TGEHP------ILQLALHDDN--IWVA---------TTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGST 402 (764)
Q Consensus 340 ~~~~~------V~~l~~spd~--l~~~---------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 402 (764)
..... ...+.|+||+ |+.. ..+..|++||+.+++...... +... +.
T Consensus 281 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~------~~---------- 343 (388)
T 3pe7_A 281 SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR-HDTS------WK---------- 343 (388)
T ss_dssp EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE-CCCC------CC----------
T ss_pred cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc-ccCc------cc----------
Confidence 32220 1223689998 5433 446689999998865432221 1100 00
Q ss_pred CcccCCCCCCccccCCCCceEeEEecCCcEEEEee-CCCcEEEEEcc
Q 046871 403 PVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD-AAGSVKLWEIT 448 (764)
Q Consensus 403 ~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s-~dG~V~lWdi~ 448 (764)
. ........+...+|+|||++|+..+ .+|...||.+.
T Consensus 344 ----~-----~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 344 ----V-----FEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ----C-----BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ----c-----cccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 0 0000011245678999999887554 57877777654
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.1e-16 Score=172.21 Aligned_cols=273 Identities=9% Similarity=0.055 Sum_probs=180.6
Q ss_pred EEEEEeCC--CcEEEEeCCCCCCcc--ceeec-ccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeecccc-C
Q 046871 54 YLFTGSRD--GTLKRWSLADDVGSC--SATFE-SHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQH-S 126 (764)
Q Consensus 54 ~L~sgs~D--g~I~iWd~~~~~~~~--~~~l~-~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h-~ 126 (764)
+|+.|+.. +.|.+|+++...++. +.... .+...+..++|+|++ +|++++.+ .|.+|++..+++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46666653 568887764322332 22221 234468889999998 68888877 99999974245554332211 1
Q ss_pred CceEEEEEecCCCc--EEEEEe-------------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 127 DYVTCLAAAEKNSN--IVASGG-------------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 127 ~~V~~l~~~p~~~~--~lasg~-------------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+.+.+++|+ ++++ ++++++ .++.+.+|++.......
T Consensus 83 g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~---------------------------- 133 (365)
T 1jof_A 83 GHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE---------------------------- 133 (365)
T ss_dssp SSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE----------------------------
T ss_pred CCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc----------------------------
Confidence 235568888 6777 355553 68899999996310000
Q ss_pred cCCCCcccccccCCCCccceec-cCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCC-CCcee--EEec--cCCcCeEE
Q 046871 192 IGSSNSISAHTSQSQGYVPIAA-KGHKESVYALAMNDSGNLLVSGGT-EKVVRVWDPR-TGSKT--IKLR--GHTDNIRS 264 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~-~~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~-~~~~~--~~l~--~h~~~V~~ 264 (764)
...... ..+...+.+++|+|+|++|++++. ++.|++||+. +++.. ..+. .|...++.
T Consensus 134 ----------------~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 134 ----------------KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp ----------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ----------------ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 000000 124567899999999998887654 6799999998 67643 2333 24567999
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEeCC--CCeee---EEEe-------eecC------ceEEEE-EcCCCCEEEEecCCC-
Q 046871 265 LLLDSTGRYCLSGSS-DSMIRLWDLG--QQRCI---HSYA-------VHTD------SVWALA-STPTFSHVYSGGRDL- 323 (764)
Q Consensus 265 l~~spdg~~l~sgs~-Dg~I~iwdl~--~~~~~---~~l~-------~h~~------~V~~l~-~spd~~~l~sgs~Dg- 323 (764)
++|+|||+++++++. +++|.+|++. +++.. ..+. +|.. .+..++ |+|||++|++++.+.
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 999999999888775 6899999765 56543 2222 1222 588999 999999998776433
Q ss_pred -----cEEEEeCC-CCeEEEE---ee-cCCCeEEEEeeC---Cc--eEEEeC-CCcEEEeeCCCC
Q 046871 324 -----SLYLTDLA-TRESLLL---CT-GEHPILQLALHD---DN--IWVATT-DSSVHRWPAEGR 372 (764)
Q Consensus 324 -----~I~iwd~~-~~~~~~~---~~-~~~~V~~l~~sp---d~--l~~~s~-dg~I~iwd~~~~ 372 (764)
.|.+|++. +++.... .. ....+..++|+| ++ |++++. ++.|.+|+++..
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 5665432 22 334567889999 67 777776 489999998765
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=2.9e-16 Score=183.03 Aligned_cols=291 Identities=10% Similarity=-0.014 Sum_probs=195.9
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEE--eCCCcEEEEeCCCCCCccceeeccccccee---------EEEEe--CCC-e-
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTG--SRDGTLKRWSLADDVGSCSATFESHVDWVN---------DAVLV--GDN-T- 97 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sg--s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~---------~v~~s--~d~-~- 97 (764)
+|...|..+++ |+++-++++. +.++...||.... ......+..|...+. ...|+ ||+ .
T Consensus 21 ~~~~~~~~~~~-----s~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 21 SRSGRPACVGA-----VGDEVWWVAPRPAEAGRATLVRRRA--DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HTCSCCEEEEE-----ETTEEEEEEEETTTTTEEEEEEECT--TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred hcCCccceeEE-----cCCeEEEEecCcccCCcEEEEEECC--CCCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 68899999999 6776666666 5588999999643 233566666766666 66676 887 5
Q ss_pred EEEEeC-CCcEEEecCCCCC-eeeeeccc-----cCCceEEEEEecCCCcEEEEEeCC----------CeEEEEeCCCCC
Q 046871 98 LVSCSS-DTTLKTWNCSSDG-TCIRTLRQ-----HSDYVTCLAAAEKNSNIVASGGLG----------AEVFIWDIEAAL 160 (764)
Q Consensus 98 l~s~s~-Dg~V~vWd~~~~~-~~~~~l~~-----h~~~V~~l~~~p~~~~~lasg~~d----------g~I~iwdl~~~~ 160 (764)
|+.++. +..|.+|++...+ .....+.. |...+..++|+ ++++.|++++.+ ..|++||+.+..
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 555543 4567777652002 33444544 67788999999 788888888776 579999987510
Q ss_pred CCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc-CCCCcEEEEEEcCCCCEEEEEeCC-
Q 046871 161 APSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK-GHKESVYALAMNDSGNLLVSGGTE- 238 (764)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~V~~l~~sp~g~~l~sgs~d- 238 (764)
... ......+. .+...+..++|+|||++|+.++.+
T Consensus 173 ~~~-------------------------------------------~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 173 AAD-------------------------------------------RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp TTC-------------------------------------------GGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred ccc-------------------------------------------CCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence 000 00011122 344567788999999999987754
Q ss_pred -------CeEEEEeCC-CC---ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeeEEEeeecCc--
Q 046871 239 -------KVVRVWDPR-TG---SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS--MIRLWDLGQQRCIHSYAVHTDS-- 303 (764)
Q Consensus 239 -------g~I~iwd~~-~~---~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg--~I~iwdl~~~~~~~~l~~h~~~-- 303 (764)
..|++||+. ++ +......+|...+..+.|+|||+++++++.++ .|.+||+.+++.......+...
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 379999998 56 44444445578899999999999888888888 6777777677654444333322
Q ss_pred ------eEEEEEcCCCCEEEEecCCCcEEEE--eCCCCeEEEEeecCCCeEEE-EeeCCc-eEE-EeCCC--cEEEeeCC
Q 046871 304 ------VWALASTPTFSHVYSGGRDLSLYLT--DLATRESLLLCTGEHPILQL-ALHDDN-IWV-ATTDS--SVHRWPAE 370 (764)
Q Consensus 304 ------V~~l~~spd~~~l~sgs~Dg~I~iw--d~~~~~~~~~~~~~~~V~~l-~~spd~-l~~-~s~dg--~I~iwd~~ 370 (764)
+..++|+|+++++++++. +.+++| |+.+++......+...+..+ +++++. +++ ++.+. .|.+||+.
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 567899999999999998 999999 66666644333345567777 666666 333 33443 46666766
Q ss_pred CCCCc
Q 046871 371 GRNPQ 375 (764)
Q Consensus 371 ~~~~~ 375 (764)
+++..
T Consensus 369 ~g~~~ 373 (662)
T 3azo_A 369 TGRAR 373 (662)
T ss_dssp TCCEE
T ss_pred CCceE
Confidence 66543
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=1.9e-16 Score=170.33 Aligned_cols=243 Identities=9% Similarity=0.041 Sum_probs=169.4
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCC-CCCCccceeec--ccccceeEEEEeCCCe--E-EEEe------
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLA-DDVGSCSATFE--SHVDWVNDAVLVGDNT--L-VSCS------ 102 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~-~~~~~~~~~l~--~h~~~V~~v~~s~d~~--l-~s~s------ 102 (764)
...+..++| +|+|++|++++.+ .|.+|++. + ++...... .+ +.+.+++|+|++. + ++++
T Consensus 39 ~~~~~~~a~-----spdg~~l~~~~~~-~v~~~~~~~~--g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 39 DEPISWMTF-----DHERKNIYGAAMK-KWSSFAVKSP--TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp TCCCSEEEE-----CTTSSEEEEEEBT-EEEEEEEEET--TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCCcEEEE-----CCCCCEEEEEccc-eEEEEEECCC--CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCccee
Confidence 346778888 8999999999988 99999997 5 33332222 11 2366789999984 3 3442
Q ss_pred -------CCCcEEEecCCCCCeeeeecc----ccCCceEEEEEecCCCcEEEEEeC-CCeEEEEeCC-CCCCCCCCCCCC
Q 046871 103 -------SDTTLKTWNCSSDGTCIRTLR----QHSDYVTCLAAAEKNSNIVASGGL-GAEVFIWDIE-AALAPSKSGDAM 169 (764)
Q Consensus 103 -------~Dg~V~vWd~~~~~~~~~~l~----~h~~~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~-~~~~~~~~~~~~ 169 (764)
.++++.+|++..+++....+. .+...+.+++|+ ++++++++++. ++.|++||+. ++...
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~~g~~~------- 181 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVE------- 181 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEE-------
T ss_pred ccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-CCCCEEEEEcCCCCEEEEEEECCCCCEE-------
Confidence 689999999865555444333 245678999999 67887777654 6799999997 43100
Q ss_pred cCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc--CCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 046871 170 EDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK--GHKESVYALAMNDSGNLLVSGGT-EKVVRVWDP 246 (764)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~ 246 (764)
...... .+...+..++|+|+|+++++++. ++.|.+|++
T Consensus 182 ---------------------------------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 182 ---------------------------------------LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp ---------------------------------------EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ---------------------------------------EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 000111 23456889999999999887765 689999876
Q ss_pred C--CCceeE---Eec-------cCCc------CeEEEE-EcCCCCEEEEEeCCC------cEEEEeCC-CCeeeEE---E
Q 046871 247 R--TGSKTI---KLR-------GHTD------NIRSLL-LDSTGRYCLSGSSDS------MIRLWDLG-QQRCIHS---Y 297 (764)
Q Consensus 247 ~--~~~~~~---~l~-------~h~~------~V~~l~-~spdg~~l~sgs~Dg------~I~iwdl~-~~~~~~~---l 297 (764)
. +++... .+. +|.. .+..++ |+|||++|++++.+. +|.+|++. +++.... .
T Consensus 223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 4 565421 221 1222 488999 999999988776432 89999996 5664432 3
Q ss_pred eeecCceEEEEEcC---CCCEEEEecCC-CcEEEEeCCCC
Q 046871 298 AVHTDSVWALASTP---TFSHVYSGGRD-LSLYLTDLATR 333 (764)
Q Consensus 298 ~~h~~~V~~l~~sp---d~~~l~sgs~D-g~I~iwd~~~~ 333 (764)
..+...+..++|+| ++++|++++.+ +.|.+|++...
T Consensus 303 ~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33455577899999 89999988864 89999998765
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.4e-14 Score=149.75 Aligned_cols=242 Identities=14% Similarity=0.218 Sum_probs=181.2
Q ss_pred CCCCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec------ccccceeEEEEe-CCCeEEEEeC
Q 046871 31 DTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE------SHVDWVNDAVLV-GDNTLVSCSS 103 (764)
Q Consensus 31 ~~gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~------~h~~~V~~v~~s-~d~~l~s~s~ 103 (764)
..||-....++++ +++++++++...++.|.+||.+. .....+. +|...+.++++. +++.++.+..
T Consensus 25 ~~g~~~~p~~v~~-----~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 25 MEGQFTEPSGVAV-----NAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER 96 (286)
T ss_dssp STTCBSCEEEEEE-----CTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred CCCccCCCceEEE-----CCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC
Confidence 3678889999999 68899888888899999999873 3344443 345678899995 6776655553
Q ss_pred --CCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 104 --DTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 104 --Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
++.|.+|+. +++.+..+. .+...+.++++. ++++++++...++.|.+||......
T Consensus 97 ~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~------------------- 154 (286)
T 1q7f_A 97 SPTHQIQIYNQ--YGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNVL------------------- 154 (286)
T ss_dssp GGGCEEEEECT--TSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEE-------------------
T ss_pred CCCCEEEEECC--CCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCCCCEE-------------------
Confidence 789999994 455555553 344678999999 6778888888889999999653100
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccC--
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH-- 258 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-- 258 (764)
.......+...+.+++++++|+++++...++.|++||. +++.+..+..+
T Consensus 155 ----------------------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~ 205 (286)
T 1q7f_A 155 ----------------------------HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGI 205 (286)
T ss_dssp ----------------------------EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTT
T ss_pred ----------------------------EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCc
Confidence 00001123446889999999998888888999999997 56666666533
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeeeEEEeeecC--ceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 259 TDNIRSLLLDSTGRYCLSGSSDS-MIRLWDLGQQRCIHSYAVHTD--SVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 259 ~~~V~~l~~spdg~~l~sgs~Dg-~I~iwdl~~~~~~~~l~~h~~--~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
...+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+++++++ +.|+.|++|++...
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 36789999999999888887776 9999995 5777777776543 4789999999987777 57999999998654
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.3e-15 Score=158.15 Aligned_cols=251 Identities=10% Similarity=0.067 Sum_probs=181.6
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCC------------------------CcEEEEeCCCCCCccceeec-ccccceeEE
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRD------------------------GTLKRWSLADDVGSCSATFE-SHVDWVNDA 90 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~D------------------------g~I~iWd~~~~~~~~~~~l~-~h~~~V~~v 90 (764)
+.|.+|++ +++|+++++...+ +.|.+||..+ ++....+. ++-.....+
T Consensus 24 ~~v~~va~-----d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 24 GQVSGVAL-----DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN--AEILQSSGKNLFYLPHGL 96 (329)
T ss_dssp SCEEEEEE-----CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT--CCEEEEECTTTCSSEEEE
T ss_pred CCceEEEE-----CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC--CeEEeccCCCccCCceEE
Confidence 56999999 7899999888777 4799999987 44444443 445678899
Q ss_pred EEeCCC-eEEEEeCCCcEEEecCCCCCeeeeec---------cccCCceEEEEEecCCCcEEEEEe-CCCeEEEEeCCCC
Q 046871 91 VLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTL---------RQHSDYVTCLAAAEKNSNIVASGG-LGAEVFIWDIEAA 159 (764)
Q Consensus 91 ~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l---------~~h~~~V~~l~~~p~~~~~lasg~-~dg~I~iwdl~~~ 159 (764)
++++++ .+++...++.|++|+.......+..+ ..+......++++|.++.++++.+ .++.|++||....
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~ 176 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC
Confidence 999987 56666778999999963221144444 244557899999944788888886 6899999995431
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTE 238 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~d 238 (764)
..... ...+ .+. ....++-.....++++|+ +.++++...+
T Consensus 177 -~~~~~------------------------~~~g------------~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 177 -FVTQW------------------------GEES------------SGS--SPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp -EEEEE------------------------CEEC------------CSS--SCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred -EEEEe------------------------ccCC------------CCC--CCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 10000 0000 000 000122345789999998 7777888889
Q ss_pred CeEEEEeCCCCceeEEec--cCCcCeEEEEEcC------CCCEEEEEeCCCcEEEEeCCCCeeeEEEe---eecCceEEE
Q 046871 239 KVVRVWDPRTGSKTIKLR--GHTDNIRSLLLDS------TGRYCLSGSSDSMIRLWDLGQQRCIHSYA---VHTDSVWAL 307 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp------dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~---~h~~~V~~l 307 (764)
+.|++||..+++.+..+. .+...+.+++++| +|+..++.+.+..|++||+.+++.+.++. .+...+..|
T Consensus 218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE
T ss_pred CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE
Confidence 999999999898888874 4566888999999 33333333445689999999999998884 566779999
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 308 ASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 308 ~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
+++|+|.++++...++.|++|++..
T Consensus 298 a~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 298 VASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCc
Confidence 9999998888888899999999753
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.9e-14 Score=148.84 Aligned_cols=240 Identities=10% Similarity=0.150 Sum_probs=176.4
Q ss_pred ccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeecc------ccCCceEEEEEecCCCcEEEEEeC-CCeEEE
Q 046871 82 SHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLR------QHSDYVTCLAAAEKNSNIVASGGL-GAEVFI 153 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~------~h~~~V~~l~~~p~~~~~lasg~~-dg~I~i 153 (764)
++-..+.++++++++ .+++.+.++.|.+||.. +..+..+. .|...+..+++.++++.++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 455678899999987 55666778999999963 55555443 244578899995356666666643 789999
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
||.... .. ......+...+.+++++++|++++
T Consensus 105 ~d~~g~-~~-----------------------------------------------~~~~~~~~~~~~~i~~~~~g~l~v 136 (286)
T 1q7f_A 105 YNQYGQ-FV-----------------------------------------------RKFGATILQHPRGVTVDNKGRIIV 136 (286)
T ss_dssp ECTTSC-EE-----------------------------------------------EEECTTTCSCEEEEEECTTSCEEE
T ss_pred ECCCCc-EE-----------------------------------------------EEecCccCCCceEEEEeCCCCEEE
Confidence 995421 00 000112334678999999999888
Q ss_pred EEeCCCeEEEEeCCCCceeEEec--cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee--cCceEEEEE
Q 046871 234 SGGTEKVVRVWDPRTGSKTIKLR--GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH--TDSVWALAS 309 (764)
Q Consensus 234 sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h--~~~V~~l~~ 309 (764)
+...++.|.+||. .++.+..+. .+...+..++++++|+.+++.+.++.|++||. .++.+..+..+ ...+..+++
T Consensus 137 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~ 214 (286)
T 1q7f_A 137 VECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGI 214 (286)
T ss_dssp EETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEE
T ss_pred EECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEE
Confidence 8888899999996 466665553 34567899999999998888788999999997 56666666543 357899999
Q ss_pred cCCCCEEEEecCCC-cEEEEeCCCCeEEEEeecC---CCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCC
Q 046871 310 TPTFSHVYSGGRDL-SLYLTDLATRESLLLCTGE---HPILQLALHDDN-IWVATTDSSVHRWPAEGRNP 374 (764)
Q Consensus 310 spd~~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~---~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~ 374 (764)
+++++++++...++ .|.+||.. ++.+..+... ..+.+++++|++ +++++.++.|++|+.....+
T Consensus 215 d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 215 NSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred CCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccccc
Confidence 99999888888776 99999964 5555544432 247799999999 77778899999999876543
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=1.2e-15 Score=165.48 Aligned_cols=271 Identities=8% Similarity=-0.068 Sum_probs=164.4
Q ss_pred eCCCCCCccceeeccccc-----ceeEEEEeCCC-eEEEEeC-C--CcEEEecCCCCCeeeeeccccCCceEEEEEecCC
Q 046871 68 SLADDVGSCSATFESHVD-----WVNDAVLVGDN-TLVSCSS-D--TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN 138 (764)
Q Consensus 68 d~~~~~~~~~~~l~~h~~-----~V~~v~~s~d~-~l~s~s~-D--g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~ 138 (764)
|..+ +..+..+..+.. .+.+++|+||| +|+.+.. + ..|.+||+ ..++.......+......+.|+ ++
T Consensus 16 d~~~--g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~s-pd 91 (396)
T 3c5m_A 16 DSDT--QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFIS-TD 91 (396)
T ss_dssp CTTT--CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEEC-TT
T ss_pred cCCC--CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceEC-CC
Confidence 5555 344555554433 37888999998 5555543 2 36888886 3454443333333223347789 78
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCC
Q 046871 139 SNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKE 218 (764)
Q Consensus 139 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 218 (764)
++.|+.++.++.|++||+.++......... .........+........ .. .
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~-----------~~~~~~g~~l~~~~~~~~-------------~~-----~ 142 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVD-----------EEWKGYGTWVANSDCTKL-------------VG-----I 142 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECC-----------TTEEEEEEEEECTTSSEE-------------EE-----E
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecc-----------cccCCCCCEEEeccCCcc-------------cc-----c
Confidence 999999999999999999865321100000 000000000000000000 00 0
Q ss_pred cEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC-CCCEEEEEeCC------CcEEEE
Q 046871 219 SVYALAMNDSGNLLVSG-----GTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSD------SMIRLW 286 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sg-----s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D------g~I~iw 286 (764)
....+.++|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+|
T Consensus 143 ~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 143 EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 00113567888877654 35678999999988765444 4677899999999 88877766543 368899
Q ss_pred eCCCCeeeEEEeeec--CceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCeEEEEeecCCCeEEEEeeC-Cc--eE
Q 046871 287 DLGQQRCIHSYAVHT--DSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRESLLLCTGEHPILQLALHD-DN--IW 356 (764)
Q Consensus 287 dl~~~~~~~~l~~h~--~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~V~~l~~sp-d~--l~ 356 (764)
|+..++.. .+..+. ..+..++|+|++++|+.++.+ +.|++||+.+++......... .. +.|+| ++ ++
T Consensus 222 d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 222 NEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMV 298 (396)
T ss_dssp ETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEE
T ss_pred ECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEE
Confidence 98665433 333332 357889999999988766543 449999999887655443322 33 88999 88 44
Q ss_pred EEe----------------CCCcEEEeeCCCCCCc
Q 046871 357 VAT----------------TDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 357 ~~s----------------~dg~I~iwd~~~~~~~ 375 (764)
+++ .+..|++||+.+++..
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence 433 2478999999877643
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=4.5e-15 Score=172.97 Aligned_cols=241 Identities=12% Similarity=-0.007 Sum_probs=172.0
Q ss_pred ceeecccccceeEEEEeCCC-eEEEE--eCCCcEEEecCCCCCeeeeeccccCCceE---------EEEEec-CCCcE-E
Q 046871 77 SATFESHVDWVNDAVLVGDN-TLVSC--SSDTTLKTWNCSSDGTCIRTLRQHSDYVT---------CLAAAE-KNSNI-V 142 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~-~l~s~--s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~---------~l~~~p-~~~~~-l 142 (764)
...+.+|...+..++|+++. .+++. +.++...||.... +.....+..|...+. ...|+. +|++. |
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA-DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT-TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECC-CCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 44567789999999999887 45555 4578899998633 344555666665555 555652 56666 5
Q ss_pred EEEe-CCCeEEEEeCC--C-CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC---
Q 046871 143 ASGG-LGAEVFIWDIE--A-ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG--- 215 (764)
Q Consensus 143 asg~-~dg~I~iwdl~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--- 215 (764)
+.++ .+..|.+|++. + +. ...+..
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-------------------------------------------------~~~l~~~~~ 125 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-------------------------------------------------PRPLTPVSA 125 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-------------------------------------------------CEECSCCCC
T ss_pred EEEECCCCeEEEEcCCCCCCCC-------------------------------------------------CEeccCCcc
Confidence 5554 35667777665 1 21 011112
Q ss_pred --CCCcEEEEEEcCCCCEEEEEeCC----------CeEEEEeCCC------CceeEEec-cCCcCeEEEEEcCCCCEEEE
Q 046871 216 --HKESVYALAMNDSGNLLVSGGTE----------KVVRVWDPRT------GSKTIKLR-GHTDNIRSLLLDSTGRYCLS 276 (764)
Q Consensus 216 --~~~~V~~l~~sp~g~~l~sgs~d----------g~I~iwd~~~------~~~~~~l~-~h~~~V~~l~~spdg~~l~s 276 (764)
|...+.+++|+|||+.|++++.+ ..|++||+.+ ++ ...+. .+...+..++|||||++|+.
T Consensus 126 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~ 204 (662)
T 3azo_A 126 VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVW 204 (662)
T ss_dssp STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEE
T ss_pred CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEE
Confidence 55678899999999999998876 5899999987 44 44555 56678888999999999998
Q ss_pred EeCCC--------cEEEEeCC-CC---eeeEEEeeecCceEEEEEcCCCCEEEEecCCC--cEEEEeCCCCeEEEEeecC
Q 046871 277 GSSDS--------MIRLWDLG-QQ---RCIHSYAVHTDSVWALASTPTFSHVYSGGRDL--SLYLTDLATRESLLLCTGE 342 (764)
Q Consensus 277 gs~Dg--------~I~iwdl~-~~---~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~ 342 (764)
++.++ .|++||+. ++ +.......|...+..++|+|||+++++++.++ .|++||+.+++......+.
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 284 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE 284 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence 87553 79999998 56 44444445578899999999999888888888 6777777777766554432
Q ss_pred CC---------eEEEEeeCCc--eEEEeCCCcEEEeeC
Q 046871 343 HP---------ILQLALHDDN--IWVATTDSSVHRWPA 369 (764)
Q Consensus 343 ~~---------V~~l~~spd~--l~~~s~dg~I~iwd~ 369 (764)
.. +..++|++++ +++++. +.+++|.+
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 22 4678888888 666777 99999944
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=1.2e-14 Score=156.01 Aligned_cols=271 Identities=7% Similarity=0.085 Sum_probs=185.8
Q ss_pred CCCcEEEEEe------CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe----------CCCcEEEecC
Q 046871 50 NGVDYLFTGS------RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS----------SDTTLKTWNC 112 (764)
Q Consensus 50 ~d~~~L~sgs------~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s----------~Dg~V~vWd~ 112 (764)
++++++++.. .|+.|.+||..+ ++.+.++..+..+ .++|+||+ ++++++ .+++|.+||.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN--GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT--CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC--CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 4667777654 478999999987 5667777776665 89999998 666665 2577999997
Q ss_pred CCCCeeeeecccc------CCceEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 113 SSDGTCIRTLRQH------SDYVTCLAAAEKNSNIVASGGL--GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 113 ~~~~~~~~~l~~h------~~~V~~l~~~p~~~~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
...+.+..+... ......++++ +++++|+++.. ++.|.+||+.+...
T Consensus 89 -~t~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~----------------------- 143 (361)
T 2oiz_A 89 -DKLTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDY----------------------- 143 (361)
T ss_dssp -TTCCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEE-----------------------
T ss_pred -cCCcEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcE-----------------------
Confidence 456666655432 2456788999 78888888764 57899999986421
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC-CceeEE------ec
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRT-GSKTIK------LR 256 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~-~~~~~~------l~ 256 (764)
...+.... ....+.+.|++ ..+++.+.||.+.+|+... ++.... +.
T Consensus 144 -------------------------~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 144 -------------------------VEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp -------------------------EEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred -------------------------EEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 11100111 12235566754 6777888899998888765 444311 22
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eeEEEeee------c----CceEEEEEcCCCCEEEEecC---
Q 046871 257 GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR--CIHSYAVH------T----DSVWALASTPTFSHVYSGGR--- 321 (764)
Q Consensus 257 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~--~~~~l~~h------~----~~V~~l~~spd~~~l~sgs~--- 321 (764)
.+..++ .+.+++++..++..+.++.|.++|+.... .+..+... . .....++|+|+++.++.+..
T Consensus 198 ~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 198 VKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp TTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred CCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 222222 33446778888888889999999996543 22222210 0 11123789999888886543
Q ss_pred --------CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCC--CCceee
Q 046871 322 --------DLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGR--NPQKVF 378 (764)
Q Consensus 322 --------Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~--~~~~~~ 378 (764)
.+.|.+||+.+++.+..+.... +.+++|+|++ ++++.. +.|.+||..++ +.+..+
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 3589999999999999888767 9999999999 676665 99999999998 665554
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=5.4e-16 Score=168.13 Aligned_cols=272 Identities=7% Similarity=-0.027 Sum_probs=167.9
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCC---CcEEEEeCCCCCCccceeecccccc-eeEEEEeCCC-eEEEEeCCCcEEE
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRD---GTLKRWSLADDVGSCSATFESHVDW-VNDAVLVGDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~D---g~I~iWd~~~~~~~~~~~l~~h~~~-V~~v~~s~d~-~l~s~s~Dg~V~v 109 (764)
...+.+++| ||||++|+..... ..|.+||+.++ +. ..+..+... ...+.|+||+ .|+.++.++.|++
T Consensus 35 ~~~~~~~~~-----SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~ 106 (396)
T 3c5m_A 35 RNYFYQKCF-----TQDGKKLLFAGDFDGNRNYYLLNLETQ--QA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMK 106 (396)
T ss_dssp CCCTTSCCB-----CTTSCEEEEEECTTSSCEEEEEETTTT--EE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEE
T ss_pred ceeeecCcC-----CCCCCEEEEEEecCCCceEEEEECCCC--cE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEE
Confidence 333566666 8999998876543 46888898873 32 333333333 3347899997 7888888899999
Q ss_pred ecCCCCCeeeeeccccCCceEE---E----------------EEecCCCcEEEEE-----eCCCeEEEEeCCCCCCCCCC
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTC---L----------------AAAEKNSNIVASG-----GLGAEVFIWDIEAALAPSKS 165 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~---l----------------~~~p~~~~~lasg-----~~dg~I~iwdl~~~~~~~~~ 165 (764)
|++. .++.......+...... + .++ ++++.++.+ ..+..|.+||+.++
T Consensus 107 ~d~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~~~l~~~d~~~g------ 178 (396)
T 3c5m_A 107 VDLE-TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEFYHTNPTCRLIKVDIETG------ 178 (396)
T ss_dssp EETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHHHHTCCCEEEEEEETTTC------
T ss_pred EECC-CCCcEEEEecccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeeeccCCCcceEEEEECCCC------
Confidence 9974 44444443333331111 1 122 222222221 12334444444432
Q ss_pred CCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCC------
Q 046871 166 GDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTE------ 238 (764)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~d------ 238 (764)
.. ..+..+...+..+.|+| +++.|+..+.+
T Consensus 179 ------------------------------------------~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 179 ------------------------------------------EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp ------------------------------------------CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred ------------------------------------------cE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCC
Confidence 11 11223556788999999 78877766543
Q ss_pred CeEEEEeCCCCceeEEeccC--CcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 239 KVVRVWDPRTGSKTIKLRGH--TDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
..|.+||+..++.. .+..+ ...+..+.|+|||++|+.++.+ +.|++||+.+++...... .. ... +.|+|
T Consensus 216 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~ 291 (396)
T 3c5m_A 216 ARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSN 291 (396)
T ss_dssp CCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEEC
T ss_pred ceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccC
Confidence 46889998765533 33333 2357889999999988777554 449999998876544322 12 223 88999
Q ss_pred -CCCEEEEec----------------CCCcEEEEeCCCCeEEEEeecCC-----------CeEEEEeeCCc--eEEEeC-
Q 046871 312 -TFSHVYSGG----------------RDLSLYLTDLATRESLLLCTGEH-----------PILQLALHDDN--IWVATT- 360 (764)
Q Consensus 312 -d~~~l~sgs----------------~Dg~I~iwd~~~~~~~~~~~~~~-----------~V~~l~~spd~--l~~~s~- 360 (764)
+++++++++ .+..|++||+.+++......+.. .+..++|+|++ |+.++.
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence 999888754 34789999999887655444443 25678899998 555543
Q ss_pred CCcEEEeeC
Q 046871 361 DSSVHRWPA 369 (764)
Q Consensus 361 dg~I~iwd~ 369 (764)
++...+|.+
T Consensus 372 ~~~~~l~~~ 380 (396)
T 3c5m_A 372 EGVPAIYIA 380 (396)
T ss_dssp TSSCEEEEE
T ss_pred CCCceEEEE
Confidence 555555544
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2.7e-14 Score=151.09 Aligned_cols=248 Identities=13% Similarity=0.184 Sum_probs=176.6
Q ss_pred ccceeEEEEeCCC-eEEEEeCC------------------------CcEEEecCCCCCeeeeecc-ccCCceEEEEEecC
Q 046871 84 VDWVNDAVLVGDN-TLVSCSSD------------------------TTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEK 137 (764)
Q Consensus 84 ~~~V~~v~~s~d~-~l~s~s~D------------------------g~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~ 137 (764)
-..+.++++++++ .+++.+.+ ++|.+||. .+++....+. .+-..+..++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~p~gia~d-~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP-NNAEILQSSGKNLFYLPHGLSID-T 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT-TTCCEEEEECTTTCSSEEEEEEC-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC-CCCeEEeccCCCccCCceEEEEC-C
Confidence 3568899999988 44555545 37999996 4466655543 445678999999 6
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCC
Q 046871 138 NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHK 217 (764)
Q Consensus 138 ~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 217 (764)
+++++++...++.|++||......... .++.. +. .-....+.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~--------------------------~~~~~-----------~~-~g~~~~~~ 142 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLL--------------------------ILGRS-----------MQ-PGSDQNHF 142 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSE--------------------------EESBT-----------TB-CCCSTTCC
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEE--------------------------Eeccc-----------CC-CCCCcccc
Confidence 788888888899999999864310000 00000 00 00012234
Q ss_pred CcEEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCCceeEEeccC----------CcCeEEEEEcCC-CCEEEEEeCCCcEE
Q 046871 218 ESVYALAMND-SGNLLVSGG-TEKVVRVWDPRTGSKTIKLRGH----------TDNIRSLLLDST-GRYCLSGSSDSMIR 284 (764)
Q Consensus 218 ~~V~~l~~sp-~g~~l~sgs-~dg~I~iwd~~~~~~~~~l~~h----------~~~V~~l~~spd-g~~l~sgs~Dg~I~ 284 (764)
.....++++| ++.++++.+ .++.|++|| .+++.+..+... -.....|+++|+ +.++++...++.|+
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ 221 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence 5688999999 888888886 699999999 567777766422 234889999998 67777777889999
Q ss_pred EEeCCCCeeeEEEe--eecCceEEEEEcC------CCCEEEEecCCCcEEEEeCCCCeEEEEee----cCCCeEEEEeeC
Q 046871 285 LWDLGQQRCIHSYA--VHTDSVWALASTP------TFSHVYSGGRDLSLYLTDLATRESLLLCT----GEHPILQLALHD 352 (764)
Q Consensus 285 iwdl~~~~~~~~l~--~h~~~V~~l~~sp------d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~~~~V~~l~~sp 352 (764)
+||..+++.+.++. .+...+.+++++| +++..++...+..|++|+..+++.+..+. +...+..++++|
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 99998899988885 3456788999999 33322233345589999999999888774 345689999999
Q ss_pred Cc-eEEE-eCCCcEEEeeCCCC
Q 046871 353 DN-IWVA-TTDSSVHRWPAEGR 372 (764)
Q Consensus 353 d~-l~~~-s~dg~I~iwd~~~~ 372 (764)
++ ++++ ..++.|++|++...
T Consensus 302 dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCEEEEECCCCEEEEEeCCcc
Confidence 99 5554 55889999998653
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=6.7e-15 Score=173.72 Aligned_cols=237 Identities=8% Similarity=0.017 Sum_probs=164.6
Q ss_pred ceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCc-----eEEEEEecCCCcEEEEEeCC---------CeE
Q 046871 86 WVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY-----VTCLAAAEKNSNIVASGGLG---------AEV 151 (764)
Q Consensus 86 ~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~-----V~~l~~~p~~~~~lasg~~d---------g~I 151 (764)
...++.|+||+.++..+ |++|++||+ .++++...+..|... ...++|+ +|+++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEEC-CCCceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccceEE
Confidence 45689999998544444 999999997 456666666666533 2347889 789999888876 566
Q ss_pred EEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCE
Q 046871 152 FIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNL 231 (764)
Q Consensus 152 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 231 (764)
.+||+.++.. ..+..+...+...+|||||+.
T Consensus 95 ~~~d~~~~~~-------------------------------------------------~~l~~~~~~~~~~~~SPdG~~ 125 (740)
T 4a5s_A 95 DIYDLNKRQL-------------------------------------------------ITEERIPNNTQWVTWSPVGHK 125 (740)
T ss_dssp EEEETTTTEE-------------------------------------------------CCSSCCCTTEEEEEECSSTTC
T ss_pred EEEECCCCcE-------------------------------------------------EEcccCCCcceeeEECCCCCE
Confidence 7999987521 113445667999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEE-eccCCcCe-----------------EEEEEcCCCCEEEEEeCCC------------
Q 046871 232 LVSGGTEKVVRVWDPRTGSKTIK-LRGHTDNI-----------------RSLLLDSTGRYCLSGSSDS------------ 281 (764)
Q Consensus 232 l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~V-----------------~~l~~spdg~~l~sgs~Dg------------ 281 (764)
||.+. ++.|++||+.+++.... ..++...+ .++.|||||++|+.++.|.
T Consensus 126 la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 126 LAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp EEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred EEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 99884 68999999988765432 22333222 3589999999999875332
Q ss_pred ------------------------cEEEEeCCC---Ce--eeEEEee------ecCceEEEEEcCCCCEEEEec----CC
Q 046871 282 ------------------------MIRLWDLGQ---QR--CIHSYAV------HTDSVWALASTPTFSHVYSGG----RD 322 (764)
Q Consensus 282 ------------------------~I~iwdl~~---~~--~~~~l~~------h~~~V~~l~~spd~~~l~sgs----~D 322 (764)
+|++||+.+ ++ ....+.. |...+..++|+|||+.++... .+
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 488899988 73 2233432 677799999999999766443 23
Q ss_pred CcEEEEeCCCCe----EE---EE--eecCCCe-----EEEEeeCCc--eE-EEeC-CC--cEEEeeCCCCCCc
Q 046871 323 LSLYLTDLATRE----SL---LL--CTGEHPI-----LQLALHDDN--IW-VATT-DS--SVHRWPAEGRNPQ 375 (764)
Q Consensus 323 g~I~iwd~~~~~----~~---~~--~~~~~~V-----~~l~~spd~--l~-~~s~-dg--~I~iwd~~~~~~~ 375 (764)
..|++||+.+++ +. .. -.+...| ....|+||+ ++ ..+. +| .|++|++.+++..
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 479999999887 22 11 1233333 368899999 44 5543 43 5888888766543
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=9.2e-13 Score=136.48 Aligned_cols=278 Identities=8% Similarity=-0.018 Sum_probs=195.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEE-EEeCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLV-SCSSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~-s~s~Dg~V~vWd 111 (764)
.+...+.+|++ +++|+++++...++.|.+||.. +.. ....+..+...+.++++.+++.+. +...++.|..|+
T Consensus 12 ~~~~~~~~i~~-----d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 12 NQDTGPYGITV-----SDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp SSSCCEEEEEE-----CTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CcCCCccceEE-----CCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 45678999999 6889877776668899999987 321 122223345678999999988544 444578899999
Q ss_pred CCCCCee-eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 112 CSSDGTC-IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 112 ~~~~~~~-~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
.. +.. ...+......+.++++. +++.++++...++.|..||. ++...
T Consensus 85 ~~--g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~---------------------------- 132 (299)
T 2z2n_A 85 KK--GIIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIR---------------------------- 132 (299)
T ss_dssp TT--SCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEE----------------------------
T ss_pred CC--CcEEEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEE----------------------------
Confidence 63 332 12222345578899998 67788887777889999987 32100
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eccCCcCeEEEEEcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK-LRGHTDNIRSLLLDS 269 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~sp 269 (764)
..........+.++++.++|++.++...++.|..||. +++.... +..+...+.++++++
T Consensus 133 -------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 133 -------------------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN 192 (299)
T ss_dssp -------------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred -------------------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence 0011122346789999999988887777889999998 6665432 333456788999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEE-EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE-e-ecCCCeE
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHS-YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL-C-TGEHPIL 346 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~-l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~-~-~~~~~V~ 346 (764)
+|+..++...++.|.+||. +++.... +..+...+.++++++++.++++...++.|.+||. ++..... . .+...+.
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 270 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPH 270 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEE
T ss_pred CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccc
Confidence 9997777767889999999 6654322 2234467899999999987777667889999998 4543322 1 1245688
Q ss_pred EEEeeCCc-eEEEeCCCcEEEeeCCCC
Q 046871 347 QLALHDDN-IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 347 ~l~~spd~-l~~~s~dg~I~iwd~~~~ 372 (764)
++++ +++ +++++..+.|..++..++
T Consensus 271 ~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 271 GICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp EEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred eEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 9999 887 888887788888887654
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=2.6e-14 Score=153.21 Aligned_cols=260 Identities=9% Similarity=0.003 Sum_probs=179.5
Q ss_pred EEEeecccccCCCcEEEEEe----------CCCcEEEEeCCCCCCccceeecc------cccceeEEEEeCCC-eEEEEe
Q 046871 40 CLAVLKSSVSNGVDYLFTGS----------RDGTLKRWSLADDVGSCSATFES------HVDWVNDAVLVGDN-TLVSCS 102 (764)
Q Consensus 40 ~l~~~~~~~S~d~~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~l~~------h~~~V~~v~~s~d~-~l~s~s 102 (764)
.++| |||+++|+++. .++.|.+||..+ .+.+.++.. +......++++||+ +|+++.
T Consensus 54 ~i~~-----spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t--~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQV-----SNDGKKIYTMTTYHERITRGKRSDVVEVWDADK--LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEE-----CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT--CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred ceEE-----CCCCCEEEEEEecccccccCCCCCEEEEEECcC--CcEEEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 6666 89999999986 367899999987 555666543 23457789999998 666665
Q ss_pred C--CCcEEEecCCCCCeeeee-ccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 103 S--DTTLKTWNCSSDGTCIRT-LRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 103 ~--Dg~V~vWd~~~~~~~~~~-l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
. +++|.+||+ ..++.+.. +.. .. ...+.+.|.+...+++.+.||.+.+|++.........
T Consensus 127 ~~~~~~v~v~d~-~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~-------------- 189 (361)
T 2oiz_A 127 ASPATSIGIVDV-AKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ-------------- 189 (361)
T ss_dssp ESSSEEEEEEET-TTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--------------
T ss_pred CCCCCeEEEEEC-CCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--------------
Confidence 3 689999998 45666666 543 22 2235566555578888999999999998642110000
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEecc
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT--IKLRG 257 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~--~~l~~ 257 (764)
.. .... +.....++ .+.+++++..++..+.++.|.++|+...... ..+..
T Consensus 190 ---------~~------~~~~------------~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 241 (361)
T 2oiz_A 190 ---------SR------SKQM------------FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSL 241 (361)
T ss_dssp ---------EE------CCCC------------SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEES
T ss_pred ---------cc------ccce------------EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccc
Confidence 00 0000 00111111 1222456677777778899999998755321 11110
Q ss_pred ------C----CcCeEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEE
Q 046871 258 ------H----TDNIRSLLLDSTGRYCLSGSS-----------DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHV 316 (764)
Q Consensus 258 ------h----~~~V~~l~~spdg~~l~sgs~-----------Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l 316 (764)
+ ......++|+|++++++++.. .++|.+||+.+++.+.++..+. +++++|+|||++|
T Consensus 242 ~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 242 LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEE
Confidence 0 111223789999988877643 3489999999999999998877 9999999999999
Q ss_pred EEecCCCcEEEEeCCCC--eEEEEe-ecCCCeEEEEeeCCc
Q 046871 317 YSGGRDLSLYLTDLATR--ESLLLC-TGEHPILQLALHDDN 354 (764)
Q Consensus 317 ~sgs~Dg~I~iwd~~~~--~~~~~~-~~~~~V~~l~~spd~ 354 (764)
++++. +.|.+||..++ +.+..+ ........++++|+|
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98887 99999999999 888886 556677889999986
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=5.5e-13 Score=150.57 Aligned_cols=337 Identities=13% Similarity=0.089 Sum_probs=223.5
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCC-CCCeeeeeccccC
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCS-SDGTCIRTLRQHS 126 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~-~~~~~~~~l~~h~ 126 (764)
++++.++++...++.|.++|..+ .+.+.++... ..+..+.|+||+ ++++++.|+.|.+||+. .+.+.+..+....
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t--~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGST--YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTT--CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCceEEEEeCCCCeEEEEECCC--CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC
Confidence 34455677777889999999998 5666666543 346689999997 78888999999999974 2456666665433
Q ss_pred CceEEEEEec---CCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 127 DYVTCLAAAE---KNSNIVASGG-LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 127 ~~V~~l~~~p---~~~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
....++|++ ++++++++++ .++.|.++|..+.+....... .
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~---------------------------~------- 285 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST---------------------------R------- 285 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC---------------------------C-------
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec---------------------------c-------
Confidence 457899995 4777766655 458999999876422110000 0
Q ss_pred cCCCCccceeccCC-CCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEe
Q 046871 203 SQSQGYVPIAAKGH-KESVYALAMNDSGNL-LVSGGTEKVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGS 278 (764)
Q Consensus 203 ~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~-l~sgs~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs 278 (764)
+........| ...+..+..++++.. ++.....|.|.++|..+.+.+. .+ ........+.|+|+|++++++.
T Consensus 286 ----~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 286 ----GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp ----EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEE
T ss_pred ----ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEe
Confidence 0000000001 225777888887554 4455667999999987764322 22 2334567889999999987665
Q ss_pred -CCCcEEEEeCCCCeeeEEEee-----ecCceEEEEEcCCCCEEE-Eec-CCCcEEEEeCCC-------CeEEEEeecC-
Q 046871 279 -SDSMIRLWDLGQQRCIHSYAV-----HTDSVWALASTPTFSHVY-SGG-RDLSLYLTDLAT-------RESLLLCTGE- 342 (764)
Q Consensus 279 -~Dg~I~iwdl~~~~~~~~l~~-----h~~~V~~l~~spd~~~l~-sgs-~Dg~I~iwd~~~-------~~~~~~~~~~- 342 (764)
.+++|.++|+.+++.+..+.. |.+.-.. .++|++..++ ++. .++.|.++|..+ .+.+..+...
T Consensus 361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g 439 (567)
T 1qks_A 361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG 439 (567)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred CCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC
Confidence 578999999999998877754 3222212 2588855554 443 468999999987 5566666643
Q ss_pred CCeEEEEeeCCc--eEEEeC-------CCcEEEeeCCCCCC---c---eeeecCCcceeccccccccccccCCCCCcccC
Q 046871 343 HPILQLALHDDN--IWVATT-------DSSVHRWPAEGRNP---Q---KVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 343 ~~V~~l~~spd~--l~~~s~-------dg~I~iwd~~~~~~---~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
..-..+..+|++ +|+... .++|.++|+.+.+. . ..+.. ..|+
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~--------~~~~--------------- 496 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI--------AEWA--------------- 496 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH--------HHHH---------------
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc--------cccc---------------
Confidence 333557889998 787763 35999999986521 1 11110 0000
Q ss_pred CCCCCccccCCCCceEeEEecCCcEEEEee-----CCCcEEEEEccccEEeeecC
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHVLTKD-----AAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s-----~dG~V~lWdi~tg~~i~~~~ 457 (764)
. .-++...+....|++||++|..+. .++.|.|+|..|+++++.+.
T Consensus 497 -~----~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 497 -G----ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp -T----CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred -c----cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 0 012345678899999999886652 37999999999999998874
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=2.9e-14 Score=151.72 Aligned_cols=253 Identities=11% Similarity=0.102 Sum_probs=168.1
Q ss_pred CeeEEEeecccccCCCcEEEEEe---------CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC--
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGS---------RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD-- 104 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs---------~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D-- 104 (764)
.+...++ ||++++... .++.|.+||+.+++ ...+ ..+..+.|+||| .|+.++.+
T Consensus 16 ~~~~~~~-------dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l----~~~~~~~~SpDg~~la~~~~~~~ 81 (347)
T 2gop_A 16 YLSDPRT-------KGELVAYVLTKANLKDNKYENTIVIENLKNNA---RRFI----ENATMPRISPDGKKIAFMRANEE 81 (347)
T ss_dssp EEEEEEE-------ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---EEEE----ESCEEEEECTTSSEEEEEEEETT
T ss_pred EcccceE-------CCcEEEEEEeecCcccCCccceEEEEeCCCCc---eEEc----ccCCCeEECCCCCEEEEEEeccC
Confidence 4555555 577766532 25789999998743 2333 568889999998 67766543
Q ss_pred -C--cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC---------------------------CeEEEE
Q 046871 105 -T--TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG---------------------------AEVFIW 154 (764)
Q Consensus 105 -g--~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d---------------------------g~I~iw 154 (764)
+ .|.+|++ ..++...... +.. +..++|+ ++++.|+.++.+ ..|.+|
T Consensus 82 ~~~~~l~~~~~-~~g~~~~l~~-~~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 82 KKVSEIWVADL-ETLSSKKILE-AKN-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp TTEEEEEEEET-TTTEEEEEEE-ESE-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred CCcceEEEEEC-CCCceEEEEc-CCC-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 3 3777786 3354444333 334 8999999 678877777643 345555
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
|+.++ .....+.. . .+..++|+|+| ++++
T Consensus 158 d~~~~------------------------------------------------~~~~~l~~-~-~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 158 DTESE------------------------------------------------EVIEEFEK-P-RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp ETTTT------------------------------------------------EEEEEEEE-E-TTCEEEEETTE-EEEE
T ss_pred ECCCC------------------------------------------------eEEeeecC-C-CcccccCCCCe-EEEE
Confidence 55432 11011222 2 67789999999 7777
Q ss_pred EeCCC---------eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCeeeEEE
Q 046871 235 GGTEK---------VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD--------SMIRLWDLGQQRCIHSY 297 (764)
Q Consensus 235 gs~dg---------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D--------g~I~iwdl~~~~~~~~l 297 (764)
+..++ .|.++| +++ ...+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++.....
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 75542 455555 444 3444444 555554 9999998877754 3688888 55554444
Q ss_pred eeecCceEE-EEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc-eEEEeCCCcE-EEeeCC
Q 046871 298 AVHTDSVWA-LASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN-IWVATTDSSV-HRWPAE 370 (764)
Q Consensus 298 ~~h~~~V~~-l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~-l~~~s~dg~I-~iwd~~ 370 (764)
..|...+.. +.|+ ++ ++++++.++.+++| +.+++......+...|.+++|+| . +++++.++.. .+|.++
T Consensus 259 ~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 259 DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 556677886 8999 88 88899999999999 87776666666677899999999 8 5666666654 777766
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1e-13 Score=146.57 Aligned_cols=266 Identities=7% Similarity=-0.031 Sum_probs=185.5
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCe-EEEEeCCCcEEEecCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNT-LVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-l~s~s~Dg~V~vWd~~~~ 115 (764)
.|.+++| ++++..++..+.++.++.|. ......+..+...+.+++|++++. ++++..++.|.+||.. .
T Consensus 7 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~-~ 75 (333)
T 2dg1_A 7 DLPTLFY-----SGKSNSAVPIISESELQTIT-----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE-T 75 (333)
T ss_dssp CCCBCCS-----CGGGGCSSCCCCGGGSCEEE-----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT-T
T ss_pred ccceeee-----cCCccceeEEeecccCcccc-----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC-C
Confidence 4667776 67777777778889999993 334666777777889999999984 4567788999999973 3
Q ss_pred CeeeeeccccCCceEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 116 GTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG----AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 116 ~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
++.......+...+.+++++ ++++++++...+ +.|.+||..+.....
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~---------------------------- 126 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQD---------------------------- 126 (333)
T ss_dssp CCEEEEEECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEE----------------------------
T ss_pred CcEEEEeeCCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEE----------------------------
Confidence 44443333466789999999 677887777666 689999987632100
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeEEeccCCcCeEEE
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT------EKVVRVWDPRTGSKTIKLRGHTDNIRSL 265 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~V~~l 265 (764)
......+...+.+++++|+|+++++... .+.|..+|..+++... +..+...+..+
T Consensus 127 ------------------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i 187 (333)
T 2dg1_A 127 ------------------IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGI 187 (333)
T ss_dssp ------------------EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEE
T ss_pred ------------------EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccce
Confidence 0000112456889999999988777653 3567778876555433 32334467899
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEeCCC-CeeeEEEe-----eec--CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE
Q 046871 266 LLDSTGRYCL-SGSSDSMIRLWDLGQ-QRCIHSYA-----VHT--DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 266 ~~spdg~~l~-sgs~Dg~I~iwdl~~-~~~~~~l~-----~h~--~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
+|+|+|++|+ +.+.++.|.+||+.+ +..+..+. ... ..+..++++++++++++...++.|.+||. +++.+
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI 266 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEE
Confidence 9999998665 445678999999963 33332211 111 36788999999998888777899999998 45555
Q ss_pred EEeecCC-------CeEEEEeeCCc--eEEEeCCC
Q 046871 337 LLCTGEH-------PILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 337 ~~~~~~~-------~V~~l~~spd~--l~~~s~dg 362 (764)
..+.... .+.+++|++++ |++++.++
T Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 5554332 58899999986 77776654
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=3.8e-13 Score=142.21 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=165.1
Q ss_pred cceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 85 DWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 85 ~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
..|.++.|++++ .++..+.++.++.|. +.....+..+...+.+++|+ +++++++++..++.|.+||..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~-- 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEI-- 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCE--
T ss_pred cccceeeecCCccceeEEeecccCcccc----cceeEEEeccCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcE--
Confidence 346777888875 555667788999993 44556666677778999999 6788888888899999999875311
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC----C
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE----K 239 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d----g 239 (764)
......+...+.+++++++|+++++...+ +
T Consensus 79 ----------------------------------------------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 79 ----------------------------------------------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp ----------------------------------------------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ----------------------------------------------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 01111345679999999999988877766 6
Q ss_pred eEEEEeCCCCceeEEec--cCCcCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeeeEEEeeecCceEEEEEcC
Q 046871 240 VVRVWDPRTGSKTIKLR--GHTDNIRSLLLDSTGRYCLSGSS------DSMIRLWDLGQQRCIHSYAVHTDSVWALASTP 311 (764)
Q Consensus 240 ~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~sgs~------Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~sp 311 (764)
.|.+||..+++....+. .+...+.+++++|+|+++++... .+.|..||..+++... +..+...+..++|+|
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALST 191 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECT
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECC
Confidence 89999998876543332 24457899999999988776654 3567777765554433 333445688999999
Q ss_pred CCCEEE-EecCCCcEEEEeCCC-CeEEEE-----e---ecCCCeEEEEeeCCc-eEEEe-CCCcEEEeeCC
Q 046871 312 TFSHVY-SGGRDLSLYLTDLAT-RESLLL-----C---TGEHPILQLALHDDN-IWVAT-TDSSVHRWPAE 370 (764)
Q Consensus 312 d~~~l~-sgs~Dg~I~iwd~~~-~~~~~~-----~---~~~~~V~~l~~spd~-l~~~s-~dg~I~iwd~~ 370 (764)
++++++ +.+.++.|++||+.+ +..+.. . .....+..+++++++ +++++ .++.|.+|+.+
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 998665 555678999999963 332211 1 112357889999999 77776 46889999984
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.4e-13 Score=159.62 Aligned_cols=251 Identities=11% Similarity=0.043 Sum_probs=171.0
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCC-----cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCc
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDG-----TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTT 106 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg-----~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~ 106 (764)
+|...+.+++| ||||++||.+..++ .|++||+.++ +....... ...+..++|+||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~-----SPDg~~la~~~~~~G~~~~~i~v~d~~tg--~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAF-----SEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEE-----CTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEEE-EECSCCEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEE-----CCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCccccc-CcccceEEEEeCCCEEEEEEECCc
Confidence 45556778888 89999998775543 8999999984 33332222 2237789999997 7888877766
Q ss_pred ----------------EEEecCCCCC---eeeeeccccCCceEEEEEecCCCcEEEEEeC-----CCeEEEEeCCCCCCC
Q 046871 107 ----------------LKTWNCSSDG---TCIRTLRQHSDYVTCLAAAEKNSNIVASGGL-----GAEVFIWDIEAALAP 162 (764)
Q Consensus 107 ----------------V~vWd~~~~~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~-----dg~I~iwdl~~~~~~ 162 (764)
|++|++.... ..+.....|...+..+.|+ +++++|+.++. +..|++||+.+....
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 9999984322 1222333356668899999 77887776654 568999998751000
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC----
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE---- 238 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d---- 238 (764)
.. .......+..+...+.. .|+++|+.|+..+..
T Consensus 273 ~~-----------------------------------------~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~ 310 (710)
T 2xdw_A 273 IT-----------------------------------------GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPN 310 (710)
T ss_dssp SC-----------------------------------------SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTT
T ss_pred cC-----------------------------------------CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCC
Confidence 00 00001112233333443 477888887766543
Q ss_pred CeEEEEeCCCCc--eeEEeccCCc--CeEEEEEcCCCCEEEEEeCCCc--EEEEeCCCCeeeEEEeeecCceEEEEEcCC
Q 046871 239 KVVRVWDPRTGS--KTIKLRGHTD--NIRSLLLDSTGRYCLSGSSDSM--IRLWDLGQQRCIHSYAVHTDSVWALASTPT 312 (764)
Q Consensus 239 g~I~iwd~~~~~--~~~~l~~h~~--~V~~l~~spdg~~l~sgs~Dg~--I~iwdl~~~~~~~~l~~h~~~V~~l~~spd 312 (764)
+.|.+||+.++. ....+..|.. .+..+.|++++.++++...|+. |++||+.+++.+..+..+.+.+..+.++|+
T Consensus 311 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK 390 (710)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred CEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCC
Confidence 369999998775 2345555544 6888999977788888888885 667788778888888888888999999999
Q ss_pred CCEEEEe----cCCCcEEEEeCCCCe
Q 046871 313 FSHVYSG----GRDLSLYLTDLATRE 334 (764)
Q Consensus 313 ~~~l~sg----s~Dg~I~iwd~~~~~ 334 (764)
+..++.. ...+.|+.||+.+++
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8766522 235789999998877
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=1.1e-11 Score=128.24 Aligned_cols=278 Identities=6% Similarity=0.007 Sum_probs=190.2
Q ss_pred ccccceeEEEEeCCCeEEEEeC-CCcEEEecCCCCCeeee-eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 046871 82 SHVDWVNDAVLVGDNTLVSCSS-DTTLKTWNCSSDGTCIR-TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~~l~s~s~-Dg~V~vWd~~~~~~~~~-~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~ 159 (764)
.+...+.++++.+++.+..+.. ++.|.+||.. +.... .+..+...+.++++. +++.++++...++.|..||....
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTSC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCCCc
Confidence 3456789999999985555554 7899999964 33222 223345678999998 67788877777888999987521
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK 239 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg 239 (764)
. ...........+.++++.++|.++++...++
T Consensus 89 -~-----------------------------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 120 (299)
T 2z2n_A 89 -I-----------------------------------------------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGN 120 (299)
T ss_dssp -E-----------------------------------------------EEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred -E-----------------------------------------------EEEeCCCcCCCceeeEECCCCCEEEEecCCc
Confidence 0 0000111244688999999999888877788
Q ss_pred eEEEEeCCCCceeE-EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE-EeeecCceEEEEEcCCCCEEE
Q 046871 240 VVRVWDPRTGSKTI-KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS-YAVHTDSVWALASTPTFSHVY 317 (764)
Q Consensus 240 ~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~-l~~h~~~V~~l~~spd~~~l~ 317 (764)
.|.+||. +++... .+..+...+..++++++|+..++...++.|..||. +++.... +..+...+.++++++++.+++
T Consensus 121 ~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 198 (299)
T 2z2n_A 121 RIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF 198 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred eEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE
Confidence 9999998 555433 23334567899999999988887777889999999 6655432 223345688999999999777
Q ss_pred EecCCCcEEEEeCCCCeEEEE-ee-cCCCeEEEEeeCCc-eEEEe-CCCcEEEeeCCCCCCceeeecCCcceeccccccc
Q 046871 318 SGGRDLSLYLTDLATRESLLL-CT-GEHPILQLALHDDN-IWVAT-TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSR 393 (764)
Q Consensus 318 sgs~Dg~I~iwd~~~~~~~~~-~~-~~~~V~~l~~spd~-l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~ 393 (764)
+...++.|.+||. +++.... .. ....+.++++++++ ++++. .++.|.+|+.. +. ...+...
T Consensus 199 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~------------ 263 (299)
T 2z2n_A 199 VEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQ------------ 263 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEECS------------
T ss_pred EccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEeCC------------
Confidence 7777889999999 6654332 11 23578899999998 88887 56899999973 22 1111100
Q ss_pred cccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccE
Q 046871 394 ARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGV 451 (764)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~ 451 (764)
.+...+..+++ ++|+..++.+ .+.|..+|..+++
T Consensus 264 ----------------------~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 264 ----------------------IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ----------------------SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ----------------------CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 01233567777 8888777655 5677778877654
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=2.4e-12 Score=145.29 Aligned_cols=288 Identities=11% Similarity=0.117 Sum_probs=201.4
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEe----CCC-eEE-EEeCCCcEEEe
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLV----GDN-TLV-SCSSDTTLKTW 110 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s----~d~-~l~-s~s~Dg~V~vW 110 (764)
.+.+++| ||||++|++++.|+.|.+||+.....+.+.++.... ....++|+ ||+ +++ +...+++|.|+
T Consensus 198 ~p~~v~~-----SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 198 AVHISRL-----SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp CEEEEEE-----CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CccceEE-----CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 4556676 899999999999999999999622256666766543 35789999 587 554 44556999999
Q ss_pred cCCCCCeeeeeccc----------cCC-ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccC
Q 046871 111 NCSSDGTCIRTLRQ----------HSD-YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGING 179 (764)
Q Consensus 111 d~~~~~~~~~~l~~----------h~~-~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 179 (764)
|. .+.+.+..+.. |.. .+..+.+++.+..++++...+|.|.++|.......
T Consensus 272 D~-~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~----------------- 333 (567)
T 1qks_A 272 DG-ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL----------------- 333 (567)
T ss_dssp ET-TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-----------------
T ss_pred EC-CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-----------------
Confidence 96 45666655432 222 57788888555667777777899999998752100
Q ss_pred CCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEecc-
Q 046871 180 SGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-TEKVVRVWDPRTGSKTIKLRG- 257 (764)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~dg~I~iwd~~~~~~~~~l~~- 257 (764)
. ............+.|+|+|++++++. .++.|.++|+.+++.+..+..
T Consensus 334 -----------------------------~-v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg 383 (567)
T 1qks_A 334 -----------------------------K-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 383 (567)
T ss_dssp -----------------------------E-EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred -----------------------------e-eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence 0 00111233466889999999887665 578999999999987766543
Q ss_pred ----CCcCeEEEEEcCCCCEEE-EEe-CCCcEEEEeCCC-------CeeeEEEeeecCceEEEEEcCCCCEEEEecC---
Q 046871 258 ----HTDNIRSLLLDSTGRYCL-SGS-SDSMIRLWDLGQ-------QRCIHSYAVHTDSVWALASTPTFSHVYSGGR--- 321 (764)
Q Consensus 258 ----h~~~V~~l~~spdg~~l~-sgs-~Dg~I~iwdl~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~--- 321 (764)
|.+.--.+ ++|++..++ ++. .+++|.++|..+ .+.++++......-..+..+|++++++....
T Consensus 384 g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 384 GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence 33212122 678755554 443 468999999987 6778888765444355778999999998663
Q ss_pred ----CCcEEEEeCCCC-----e-EEEEee---------cCCCeEEEEeeCCc--eEEEeC-----CCcEEEeeCCCCCCc
Q 046871 322 ----DLSLYLTDLATR-----E-SLLLCT---------GEHPILQLALHDDN--IWVATT-----DSSVHRWPAEGRNPQ 375 (764)
Q Consensus 322 ----Dg~I~iwd~~~~-----~-~~~~~~---------~~~~V~~l~~spd~--l~~~s~-----dg~I~iwd~~~~~~~ 375 (764)
...|.++|+.+. . ....+. ....+..+.|+++| +|++.. ++.|.++|..+.+..
T Consensus 463 ~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 463 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 359999999866 2 112221 24578999999999 776643 799999999999887
Q ss_pred eeee
Q 046871 376 KVFQ 379 (764)
Q Consensus 376 ~~~~ 379 (764)
..++
T Consensus 543 ~~i~ 546 (567)
T 1qks_A 543 HVIK 546 (567)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7765
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=5.7e-13 Score=136.16 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=167.8
Q ss_pred CeeEEEeecccccCCCcEEE-EEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLF-TGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSD 115 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~-sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~ 115 (764)
...++++ +++|++++ +.+.++.|.+||..+.. .......+...+.++++.+++.++.+..++.|.+||..
T Consensus 25 ~p~~i~~-----~~~g~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-- 95 (270)
T 1rwi_B 25 SPSGVAV-----DSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-- 95 (270)
T ss_dssp CEEEEEE-----CTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT--
T ss_pred CccceEE-----CCCCCEEEEccCCCCcEEEecCCCcc--cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC--
Confidence 6788888 68888666 44678999999976532 11111233456889999998855555558899999963
Q ss_pred Ceeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 116 GTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 116 ~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
+.....+. .....+.++++. ++++++++...++.|.+|+..+....
T Consensus 96 ~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~-------------------------------- 142 (270)
T 1rwi_B 96 SNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQT-------------------------------- 142 (270)
T ss_dssp CSCCEECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCE--------------------------------
T ss_pred CceEeeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeE--------------------------------
Confidence 32233332 233578899999 67788877777889999975432100
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEE
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 274 (764)
.........+.+++++++|+++++...++.|.+||............+...+..|+++++|..+
T Consensus 143 ----------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 143 ----------------VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVY 206 (270)
T ss_dssp ----------------ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEE
T ss_pred ----------------eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEE
Confidence 0011112345788999999977777778899999988766544333344678999999999877
Q ss_pred EEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE
Q 046871 275 LSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
++...++.|.+||............+...+.+++++++++++++...++.|+++++...+.
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 7777788999999866543332223335689999999999888888999999999876543
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=2e-12 Score=136.57 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=183.5
Q ss_pred CCcEEEecCCCCCeeeeecc------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccc
Q 046871 104 DTTLKTWNCSSDGTCIRTLR------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGI 177 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 177 (764)
+++|.+||. .+++....+. ........+++. ++.++++...++.|.+||..+++..
T Consensus 16 ~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~--------------- 77 (328)
T 3dsm_A 16 NATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEV--------------- 77 (328)
T ss_dssp CBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEE---------------
T ss_pred CceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEE---------------
Confidence 789999997 4455554431 122456778876 4666677777899999999874211
Q ss_pred cCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 046871 178 NGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG 257 (764)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 257 (764)
..+. .......+++++++..+++...++.|.+||+.+++....+..
T Consensus 78 ---------------------------------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 78 ---------------------------------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp ---------------------------------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred ---------------------------------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 1121 235578899988885444444789999999999988776653
Q ss_pred CC-----cCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC--------
Q 046871 258 HT-----DNIRSLLLDSTGRYCLSGS--SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD-------- 322 (764)
Q Consensus 258 h~-----~~V~~l~~spdg~~l~sgs--~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D-------- 322 (764)
.. .....+++ ++..++++. .++.|.+||+.+++.+.++... .....++++|++++++++..+
T Consensus 124 g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcccc
Confidence 33 14556777 355555554 4889999999999988887653 345788999999977776654
Q ss_pred --CcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCcceecccccccccc
Q 046871 323 --LSLYLTDLATRESLLLCTG--EHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARV 396 (764)
Q Consensus 323 --g~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 396 (764)
+.|.++|..+++....+.. ......++++|++ ++++.. .|.+||..+++..... +-
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~------------~~---- 262 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP------------FL---- 262 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC------------SB----
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee------------ee----
Confidence 7899999999987766654 3468999999987 666654 8999999876532100 00
Q ss_pred ccCCCCCcccCCCCCCccccCCCCceEeEEec-CCcEEEEe----eCCCcEEEEEccccEEeeec
Q 046871 397 SLEGSTPVSSRFKEPNFTIPGIPGIVQHEILN-NRRHVLTK----DAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~-dg~~l~t~----s~dG~V~lWdi~tg~~i~~~ 456 (764)
. .+......++++| +++..++. ..+|.|.+||.. |+.++++
T Consensus 263 ------------~------~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 263 ------------E------FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ------------C------CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred ------------c------CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 0 0123356788998 55555665 578999999998 9999887
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=1e-12 Score=138.89 Aligned_cols=267 Identities=9% Similarity=0.025 Sum_probs=185.1
Q ss_pred CCCcEEEEeCCCCCCccceeec------ccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEE
Q 046871 60 RDGTLKRWSLADDVGSCSATFE------SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLA 133 (764)
Q Consensus 60 ~Dg~I~iWd~~~~~~~~~~~l~------~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~ 133 (764)
.+++|.+||.+++ +....+. .......++.+..+..+++...++.|.+||. .+++.+.++. .......++
T Consensus 15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEE
T ss_pred CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEE
Confidence 3789999999883 3333221 1224467788865556667777899999997 5577777664 346688999
Q ss_pred EecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceec
Q 046871 134 AAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA 213 (764)
Q Consensus 134 ~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 213 (764)
++ +++.++++...++.|.+||..+........ . +. .
T Consensus 91 ~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~------------------------------------~---g~----~ 126 (328)
T 3dsm_A 91 FL-SDEKAYVTQIWDYRIFIINPKTYEITGYIE------------------------------------C---PD----M 126 (328)
T ss_dssp EE-ETTEEEEEEBSCSEEEEEETTTTEEEEEEE------------------------------------C---TT----C
T ss_pred Ee-CCCeEEEEECCCCeEEEEECCCCeEEEEEE------------------------------------c---CC----c
Confidence 97 456555555488999999998742111000 0 00 0
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC----------C
Q 046871 214 KGHKESVYALAMNDSGNLLVSGG--TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD----------S 281 (764)
Q Consensus 214 ~~~~~~V~~l~~sp~g~~l~sgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D----------g 281 (764)
.+.......+++ . +..++++. .++.|.++|+.+++.+..+... .....++++++|++++++..+ +
T Consensus 127 ~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~ 203 (328)
T 3dsm_A 127 DMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP 203 (328)
T ss_dssp CTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred cccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence 001112345556 3 44555544 4889999999999888777643 345789999999977777654 7
Q ss_pred cEEEEeCCCCeeeEEEeeec-CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE--Eeec-CCCeEEEEeeCC-c-e
Q 046871 282 MIRLWDLGQQRCIHSYAVHT-DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL--LCTG-EHPILQLALHDD-N-I 355 (764)
Q Consensus 282 ~I~iwdl~~~~~~~~l~~h~-~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~-~~~V~~l~~spd-~-l 355 (764)
.|.++|..+++...++.... .....++++|++++++.+.. .|.+||..+++... .+.. ......++++|+ + +
T Consensus 204 ~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~l 281 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEV 281 (328)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCE
T ss_pred eEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeE
Confidence 89999999998887776432 36899999999999988765 89999998877532 1221 356889999994 4 7
Q ss_pred EEEe-----CCCcEEEeeCCCCCCceeeec
Q 046871 356 WVAT-----TDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 356 ~~~s-----~dg~I~iwd~~~~~~~~~~~~ 380 (764)
+++. .++.|.+||.. ++.+..+..
T Consensus 282 yva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 282 YVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 7775 57899999998 787777753
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=6.9e-13 Score=140.97 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=159.1
Q ss_pred CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC---C--eEEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG---A--EVFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d---g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
++.|.+|++. .++. ..+ ..+..++|+ ++++.|+..+.+ + .|.+||+.++.
T Consensus 42 ~~~l~~~d~~-~~~~-~~l----~~~~~~~~S-pDg~~la~~~~~~~~~~~~l~~~~~~~g~------------------ 96 (347)
T 2gop_A 42 ENTIVIENLK-NNAR-RFI----ENATMPRIS-PDGKKIAFMRANEEKKVSEIWVADLETLS------------------ 96 (347)
T ss_dssp EEEEEEEETT-TCCE-EEE----ESCEEEEEC-TTSSEEEEEEEETTTTEEEEEEEETTTTE------------------
T ss_pred cceEEEEeCC-CCce-EEc----ccCCCeEEC-CCCCEEEEEEeccCCCcceEEEEECCCCc------------------
Confidence 5679999974 3433 233 567889999 788888777643 3 47777776531
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC--------------------
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE-------------------- 238 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d-------------------- 238 (764)
... +..+.. +..++|+|+|+.|+.++.+
T Consensus 97 ------------------------------~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 97 ------------------------------SKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp ------------------------------EEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred ------------------------------eEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 111 111223 8899999999998887642
Q ss_pred -------CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCeeeEEEeeecCce
Q 046871 239 -------KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS-------MIRLWDLGQQRCIHSYAVHTDSV 304 (764)
Q Consensus 239 -------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg-------~I~iwdl~~~~~~~~l~~h~~~V 304 (764)
..|.+||+.+++.+..+.. . .+..+.|+||| ++++++.++ ...||.+.+++. ..+..+ ..+
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~ 219 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSF 219 (347)
T ss_dssp -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESE
T ss_pred ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cce
Confidence 5799999998876455554 3 78899999999 777776542 334444435543 444445 555
Q ss_pred EEEEEcCCCCEEEEecCC--------CcEEEEeCCCCeEEEEeec-CCCeEE-EEeeCCc-eEEEeCCCcEEEeeCCCCC
Q 046871 305 WALASTPTFSHVYSGGRD--------LSLYLTDLATRESLLLCTG-EHPILQ-LALHDDN-IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 305 ~~l~~spd~~~l~sgs~D--------g~I~iwd~~~~~~~~~~~~-~~~V~~-l~~spd~-l~~~s~dg~I~iwd~~~~~ 373 (764)
..+ +|+|++|+.++.+ ..|++|| +++....... ...+.. +.|+ ++ +++++.++.+++| +.+++
T Consensus 220 ~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 220 YAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSS
T ss_pred eeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCc
Confidence 554 9999998876644 3688888 5555444443 456775 8999 88 6777889999999 87433
Q ss_pred CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcE-EEEEccccE
Q 046871 374 PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSV-KLWEITRGV 451 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V-~lWdi~tg~ 451 (764)
....+ .+...+..+++++ +.+++++.++.. .+|.+. |+
T Consensus 294 ~~~~~-------------------------------------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 294 IKPIA-------------------------------------KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEE-------------------------------------CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred eEEEe-------------------------------------cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 21111 1122355677888 677777777765 788776 55
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=1.2e-12 Score=153.74 Aligned_cols=276 Identities=11% Similarity=0.036 Sum_probs=181.5
Q ss_pred CCCcEEEEEeCC-----CcEEEEeCCCCCCcccee----ecccccceeEEEEeCCC-eEEEEeCC-C----cEEEecCCC
Q 046871 50 NGVDYLFTGSRD-----GTLKRWSLADDVGSCSAT----FESHVDWVNDAVLVGDN-TLVSCSSD-T----TLKTWNCSS 114 (764)
Q Consensus 50 ~d~~~L~sgs~D-----g~I~iWd~~~~~~~~~~~----l~~h~~~V~~v~~s~d~-~l~s~s~D-g----~V~vWd~~~ 114 (764)
|+|++++-...+ +.|.+.+...+..+.+.. -.+|...+..++|+||+ +|+.++.+ | +|++||+ .
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~-~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV-D 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET-T
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC-C
Confidence 677777655432 234444444322211111 12355578899999998 66655443 3 8999998 4
Q ss_pred CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCe----------------EEEEeCCCCCCCCCCCCCCcCCcCcccc
Q 046871 115 DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE----------------VFIWDIEAALAPSKSGDAMEDDCSTGIN 178 (764)
Q Consensus 115 ~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~----------------I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 178 (764)
+++.......+ ..+..++|+ +|++.|+.++.++. |++|++.++...
T Consensus 160 tg~~~~~~~~~-~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~---------------- 221 (710)
T 2xdw_A 160 GAKELPDVLER-VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE---------------- 221 (710)
T ss_dssp TTEEEEEEEEE-ECSCCEEEC-TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG----------------
T ss_pred CCCCCcccccC-cccceEEEE-eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc----------------
Confidence 45554432222 236679999 78888888877665 888887653110
Q ss_pred CCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCC-----
Q 046871 179 GSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-----EKVVRVWDPRT----- 248 (764)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-----dg~I~iwd~~~----- 248 (764)
...+.....+...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 222 ----------------------------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 222 ----------------------------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp ----------------------------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred ----------------------------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 0011112234556789999999999987764 57899999986
Q ss_pred -Cc-eeEEeccCCcCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCe--eeEEEeeecC--ceEEEEEcCCCCEEEE
Q 046871 249 -GS-KTIKLRGHTDNIRSLLLDSTGRYCLSGSSD----SMIRLWDLGQQR--CIHSYAVHTD--SVWALASTPTFSHVYS 318 (764)
Q Consensus 249 -~~-~~~~l~~h~~~V~~l~~spdg~~l~sgs~D----g~I~iwdl~~~~--~~~~l~~h~~--~V~~l~~spd~~~l~s 318 (764)
+. ....+..+...+.. .|+++|+.|+..+.+ +.|.+||+.++. ....+..|.. .+..++|++++.++++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 43 45666667766655 488999988766653 359999998764 2455555654 6888999988888888
Q ss_pred ecCCCc--EEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEE-e---CCCcEEEeeCCCCC
Q 046871 319 GGRDLS--LYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVA-T---TDSSVHRWPAEGRN 373 (764)
Q Consensus 319 gs~Dg~--I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~-s---~dg~I~iwd~~~~~ 373 (764)
...|+. |++|++.+++.+..+. +...+..+.++|++ ++.. + ..+.|++||+.+++
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888884 6677876776555544 35567889999887 4433 2 24789999998876
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.2e-12 Score=135.94 Aligned_cols=236 Identities=15% Similarity=0.103 Sum_probs=167.0
Q ss_pred CCCCeeEEEeecccccCCCc-EEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEe-CCCcEEEec
Q 046871 34 HCAGINCLAVLKSSVSNGVD-YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCS-SDTTLKTWN 111 (764)
Q Consensus 34 H~~~V~~l~~~~~~~S~d~~-~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s-~Dg~V~vWd 111 (764)
+.....+++| +|+++ +++++..++.|..||..+ . ...+..+...+.++++++++.++.+. .++.|.+||
T Consensus 26 ~~~~~eg~~~-----d~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 26 GFTWTEGPVY-----VPARSAVIFSDVRQNRTWAWSDDG--Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCSSEEEEEE-----EGGGTEEEEEEGGGTEEEEEETTS--C--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CCccccCCeE-----eCCCCEEEEEeCCCCEEEEEECCC--C--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 4556788998 68888 788888899999999986 3 55666677889999999998555444 468999999
Q ss_pred CCCCCeeeeecccc----CCceEEEEEecCCCcEEEEEeC-----------------CCeEEEEeCCCCCCCCCCCCCCc
Q 046871 112 CSSDGTCIRTLRQH----SDYVTCLAAAEKNSNIVASGGL-----------------GAEVFIWDIEAALAPSKSGDAME 170 (764)
Q Consensus 112 ~~~~~~~~~~l~~h----~~~V~~l~~~p~~~~~lasg~~-----------------dg~I~iwdl~~~~~~~~~~~~~~ 170 (764)
. .+++........ ...+..+++. ++++++++... .+.|..++.. +
T Consensus 97 ~-~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----------- 162 (296)
T 3e5z_A 97 E-PGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----------- 162 (296)
T ss_dssp S-TTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----------
T ss_pred C-CCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-----------
Confidence 6 334433322211 2346678998 67888877321 2234444332 1
Q ss_pred CCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC
Q 046871 171 DDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR-TG 249 (764)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~-~~ 249 (764)
. ......+......++|+|+++.+++.+.++.|.+||+. ++
T Consensus 163 -------------------------------------~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g 204 (296)
T 3e5z_A 163 -------------------------------------T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG 204 (296)
T ss_dssp -------------------------------------C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS
T ss_pred -------------------------------------C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC
Confidence 0 01122334556889999999999777888999999986 55
Q ss_pred ce---eEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEE-cCCCCEEEEecCCCcE
Q 046871 250 SK---TIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS-TPTFSHVYSGGRDLSL 325 (764)
Q Consensus 250 ~~---~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~-spd~~~l~sgs~Dg~I 325 (764)
+. ...+..+...+..++++++|++.++. ++.|.+||.. ++.+..+..+.. +.+++| .|+++.|+.++.+ .+
T Consensus 205 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l 279 (296)
T 3e5z_A 205 ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EF 279 (296)
T ss_dssp CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence 54 23333355667889999999866655 8899999986 888888887777 899999 6899989888876 45
Q ss_pred EEEeCCCCeE
Q 046871 326 YLTDLATRES 335 (764)
Q Consensus 326 ~iwd~~~~~~ 335 (764)
..++..+...
T Consensus 280 ~~~~~~~~~~ 289 (296)
T 3e5z_A 280 WSIETNVRGL 289 (296)
T ss_dssp EEEECSCCBC
T ss_pred EEEEcccccc
Confidence 5566665543
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=3.7e-11 Score=124.36 Aligned_cols=275 Identities=8% Similarity=-0.020 Sum_probs=190.5
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEE-eCCCcEEEec
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSC-SSDTTLKTWN 111 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~-s~Dg~V~vWd 111 (764)
.....+.+|++ +++|++.++...++.|.+||.. +... ...+..+...+.++++.+++.+..+ ..++.|..||
T Consensus 17 ~~~~~p~~i~~-----d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 17 IPDSGPYGITS-----SEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp STTCCEEEEEE-----CTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCCcceeeE-----CCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 34567899998 6888888777778999999987 3222 1223334467889999988854444 4478899999
Q ss_pred CCCCCeee-eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 112 CSSDGTCI-RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 112 ~~~~~~~~-~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
.. ++.. ..+......+.++++. +++.++++...++.|..+|.. +...
T Consensus 90 ~~--g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~---------------------------- 137 (300)
T 2qc5_A 90 KK--GGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIY---------------------------- 137 (300)
T ss_dssp TT--SCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEE----------------------------
T ss_pred CC--CCeEEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEE----------------------------
Confidence 63 4332 2223234678899998 677887777767889999876 2100
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeccCCcCeEEEEEcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI-KLRGHTDNIRSLLLDS 269 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~sp 269 (764)
..........+.++++.++|++.++...++.|..||. +++... .+..+...+..+++++
T Consensus 138 -------------------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 197 (300)
T 2qc5_A 138 -------------------EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN 197 (300)
T ss_dssp -------------------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred -------------------EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC
Confidence 0001112346789999999997777766889999998 555443 2223445789999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEE-EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEE-ee-cCCCeE
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHS-YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLL-CT-GEHPIL 346 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~-l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~-~~~~V~ 346 (764)
+|+..++....+.|.+||. +++.... +..+...+.+++++++++++++...++.|..+|. ++..... .. ....+.
T Consensus 198 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 275 (300)
T 2qc5_A 198 DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPH 275 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCC
T ss_pred CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccc
Confidence 9987777766788999998 5544332 2234566899999999987777767789999998 4443322 22 245678
Q ss_pred EEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 347 QLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 347 ~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
++++.+++ +++++.. .|..++.
T Consensus 276 ~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 276 GITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp CEEECTTSCEEEECSS-EEEEEEE
T ss_pred eeEeCCCCCEEEEccC-ceEEeCC
Confidence 89999998 8888874 7777664
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=1.7e-12 Score=134.82 Aligned_cols=244 Identities=11% Similarity=0.056 Sum_probs=172.0
Q ss_pred ceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 77 SATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
+..+..+.....+++|++++ .++++..++.|..|+... + ...+..+...+.+++++ ++++++++...++.|.+|
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~l~~~-~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMHPSHHQNGHCLN-KQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEESSCSSEEEEEEC-TTCCEEEEETTTTEEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEECCCCCcceeeEC-CCCcEEEEecCCCeEEEE
Confidence 45555666778899999986 477888899999999733 3 55666677889999999 678888877777899999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS 234 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 234 (764)
|..++...... ..........+..++++|+|+++++
T Consensus 96 d~~~g~~~~~~--------------------------------------------~~~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 96 REPGGEWESIA--------------------------------------------DSFEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp CSTTCCEEEEE--------------------------------------------CEETTEECCCCCCEEECTTSCEEEE
T ss_pred cCCCCcEEEEe--------------------------------------------eccCCCCCCCCCCEEECCCCCEEEE
Confidence 98654211000 0000011234567899999998887
Q ss_pred ----Ee-------------CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCee---
Q 046871 235 ----GG-------------TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG-QQRC--- 293 (764)
Q Consensus 235 ----gs-------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~-~~~~--- 293 (764)
|+ ..+.|..+|.. ++ ...+..+......++|+|+|+.+++.+.++.|++||+. +++.
T Consensus 132 d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~ 209 (296)
T 3e5z_A 132 DPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ 209 (296)
T ss_dssp ECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE
T ss_pred CCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC
Confidence 33 13567777765 44 34445566778999999999999777788999999986 4554
Q ss_pred eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEe-eCCc--eEEEeCCCcEEEeeCC
Q 046871 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLAL-HDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~-spd~--l~~~s~dg~I~iwd~~ 370 (764)
...+..+...+..++++++|+++++. ++.|.+||.. ++.+..+.....+.+++| .+++ |++++.+ .+..++..
T Consensus 210 ~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 210 GVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETN 285 (296)
T ss_dssp EEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECS
T ss_pred CeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcc
Confidence 33343345567789999999876666 7899999987 666666654434899999 4776 7777765 55566666
Q ss_pred CCCC
Q 046871 371 GRNP 374 (764)
Q Consensus 371 ~~~~ 374 (764)
+...
T Consensus 286 ~~~~ 289 (296)
T 3e5z_A 286 VRGL 289 (296)
T ss_dssp CCBC
T ss_pred cccc
Confidence 5543
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=4.4e-13 Score=156.96 Aligned_cols=246 Identities=11% Similarity=0.033 Sum_probs=165.0
Q ss_pred CCCCCCeeEEEeecccccCCCcEEE-----EEeCCCcEEEEeCCCCCCccceeecccccce--eEEEEeCCC-eEEEEeC
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLF-----TGSRDGTLKRWSLADDVGSCSATFESHVDWV--NDAVLVGDN-TLVSCSS 103 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~-----sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V--~~v~~s~d~-~l~s~s~ 103 (764)
.+|...+.+++| ||||++|| .|+.+..|++||+.+++ .+. ..+...+ ..++|+||+ .|+.++.
T Consensus 117 ~~~~~~~~~~~~-----SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~~~--~~~~~~~~~~~~~wspDg~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAV-----SWDGKKVAFAQKPNAADEAVLHVIDVDSGE--WSK--VDVIEGGKYATPKWTPDSKGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEE-----CTTSSEEEEEEEETTCSCCEEEEEETTTCC--BCS--SCCBSCCTTCCCEECTTSSEEEEEEC
T ss_pred cCCCEEEEEEEE-----CCCCCEEEEEECCCCCceEEEEEEECCCCC--CcC--CcccCcccccceEEecCCCEEEEEEe
Confidence 467667888888 89999998 44455789999999854 220 1122223 689999998 7888888
Q ss_pred CCc-------------EEEecCCCCC---eeeeeccccCCceEEEEEecCCCcEEEEEeCCC----eEEEEeCCCCCCCC
Q 046871 104 DTT-------------LKTWNCSSDG---TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA----EVFIWDIEAALAPS 163 (764)
Q Consensus 104 Dg~-------------V~vWd~~~~~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg----~I~iwdl~~~~~~~ 163 (764)
|.. |++|++.... .++.....|...+..+.|+ +++++|+.++.++ .|.+||..++.
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~~~~--- 263 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPGEKD--- 263 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTTCSS---
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCCCCc---
Confidence 776 9999984432 2333444566788899999 6777777666555 56666543210
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe---CCCe
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG---TEKV 240 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs---~dg~ 240 (764)
...+..+...+....+ ++|.+++.+. .++.
T Consensus 264 ----------------------------------------------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~ 296 (695)
T 2bkl_A 264 ----------------------------------------------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR 296 (695)
T ss_dssp ----------------------------------------------CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE
T ss_pred ----------------------------------------------eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE
Confidence 1112223334455555 4555444443 3588
Q ss_pred EEEEeCCCCce--eEEeccC--CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeeeEEEeee-cCceEEEEEcCCCC
Q 046871 241 VRVWDPRTGSK--TIKLRGH--TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG-QQRCIHSYAVH-TDSVWALASTPTFS 314 (764)
Q Consensus 241 I~iwd~~~~~~--~~~l~~h--~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~-~~~~~~~l~~h-~~~V~~l~~spd~~ 314 (764)
|.+||+.+++. ...+..+ ...+..++++ ++.++++...|+..+||.+. +++....+..+ .+.+..++++|+++
T Consensus 297 l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 297 VFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD 375 (695)
T ss_dssp EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred EEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence 99999987753 2333333 4467888888 67788888999988888654 46666666655 56678888999998
Q ss_pred EEE----EecCCCcEEEEeCCCCeEEEE
Q 046871 315 HVY----SGGRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 315 ~l~----sgs~Dg~I~iwd~~~~~~~~~ 338 (764)
.++ +....++|++||+.+++....
T Consensus 376 ~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 376 DAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 777 333457899999998875433
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=2.1e-12 Score=132.65 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=174.4
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCccceeecccc-cceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccC-C
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHV-DWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHS-D 127 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~-~ 127 (764)
..+++|++++.|+.|.+||.++ ++.+.++..+. ..+.++.+.|++.++. +.++.|..||. +++.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~--~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT--KEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR--DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT--TEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT--TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCC--CeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC--CCCEEEEEcCCCCc
Confidence 3468999999999999999988 67778887766 5789999999985444 56788999996 577777776543 4
Q ss_pred ceEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCC
Q 046871 128 YVTCLAAAEKNSNIVASGGL-GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQ 206 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 206 (764)
.+.++.+. ++++++++.+. ++.|..+|.... ..... ...
T Consensus 78 ~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~~Gk-~l~~~------------------------------------~~~-- 117 (276)
T 3no2_A 78 EMQTARIL-PDGNALVAWCGHPSTILEVNMKGE-VLSKT------------------------------------EFE-- 117 (276)
T ss_dssp EEEEEEEC-TTSCEEEEEESTTEEEEEECTTSC-EEEEE------------------------------------EEC--
T ss_pred cccccEEC-CCCCEEEEecCCCCEEEEEeCCCC-EEEEE------------------------------------ecc--
Confidence 68888898 78999988877 777777776321 11000 000
Q ss_pred CccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 207 GYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 207 ~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
.. ...+......+++.++|+++++...++.|..||.. |+.+.++..+ ....++.+.++|+.+++++.++.|..+
T Consensus 118 ~~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~ 191 (276)
T 3no2_A 118 TG----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQL 191 (276)
T ss_dssp CS----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEE
T ss_pred CC----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEE
Confidence 00 00111223345678899999999999999999998 9999998764 455677888999999999988899999
Q ss_pred eCCCCeeeEEEeeec------CceEEEEEcCCCCEEEEec--CC------CcEEEEeC-CCCeEEEEee
Q 046871 287 DLGQQRCIHSYAVHT------DSVWALASTPTFSHVYSGG--RD------LSLYLTDL-ATRESLLLCT 340 (764)
Q Consensus 287 dl~~~~~~~~l~~h~------~~V~~l~~spd~~~l~sgs--~D------g~I~iwd~-~~~~~~~~~~ 340 (764)
|..+++.+.++..+. ..+..++..++|..+++.. .. +..+++.+ .+++.+..+.
T Consensus 192 d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 192 NLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp CTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred eCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 999999999987543 1278888899998888763 21 23345555 3566655554
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=2.4e-12 Score=131.47 Aligned_cols=237 Identities=9% Similarity=0.043 Sum_probs=165.3
Q ss_pred ceeEEEEeCCCeEEE-E-eCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 86 WVNDAVLVGDNTLVS-C-SSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 86 ~V~~v~~s~d~~l~s-~-s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
...++++.+++.++. + +.++.|.+|+.. ..........+...+.++++. ++++++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG-STGTTVLPFNGLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC-CcccceEeeCCcCCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence 577899999885444 5 677899999952 222222222333567889999 5677666665 889999998653110
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRV 243 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~i 243 (764)
.........+.+++++++|+++++...++.|.+
T Consensus 101 -----------------------------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 133 (270)
T 1rwi_B 101 -----------------------------------------------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVK 133 (270)
T ss_dssp -----------------------------------------------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred -----------------------------------------------eeecCCcCCCcceEECCCCCEEEEECCCCEEEE
Confidence 000112245789999999998888778899999
Q ss_pred EeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 244 WDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 244 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
|+..+.............+.+++++++|+.+++...++.|.+||............+...+.+++++++|.++++...++
T Consensus 134 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~ 213 (270)
T 1rwi_B 134 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN 213 (270)
T ss_dssp ECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS
T ss_pred EECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC
Confidence 98765544433333334678999999999777777788999999877655443333336789999999998777777789
Q ss_pred cEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc-eEEE-eCCCcEEEeeCCCCC
Q 046871 324 SLYLTDLATRESLLLCT-GEHPILQLALHDDN-IWVA-TTDSSVHRWPAEGRN 373 (764)
Q Consensus 324 ~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~-l~~~-s~dg~I~iwd~~~~~ 373 (764)
.|.+|+..+........ +...+.++++++++ ++++ ..++.|++++....+
T Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 214 QVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred cEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999997655433222 23568999999998 6555 458899999987654
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=7.5e-13 Score=155.01 Aligned_cols=243 Identities=9% Similarity=0.022 Sum_probs=161.0
Q ss_pred ccCCceEEEEEecCCCcEEE-----EEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcc
Q 046871 124 QHSDYVTCLAAAEKNSNIVA-----SGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSI 198 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~la-----sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 198 (764)
+|...+..++|+ +|+++|| .|+.+..|++||+.++.....
T Consensus 118 ~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---------------------------------- 162 (695)
T 2bkl_A 118 DGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---------------------------------- 162 (695)
T ss_dssp SSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----------------------------------
T ss_pred CCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCC----------------------------------
Confidence 355578999999 7888887 334456899999987532100
Q ss_pred cccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCc----eeEEeccCCcC
Q 046871 199 SAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKV-------------VRVWDPRTGS----KTIKLRGHTDN 261 (764)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~-------------I~iwd~~~~~----~~~~l~~h~~~ 261 (764)
..+... ....++|+|||+.|+.++.+.. |++|++.+++ .+.....|...
T Consensus 163 ------------~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~ 228 (695)
T 2bkl_A 163 ------------DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT 228 (695)
T ss_dssp ------------CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred ------------cccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence 001111 1156899999999999988776 9999998876 33334445668
Q ss_pred eEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec---CCCcEEEEeCCCCe
Q 046871 262 IRSLLLDSTGRYCLSGSSDS----MIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG---RDLSLYLTDLATRE 334 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg----~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs---~Dg~I~iwd~~~~~ 334 (764)
+..+.|+|||++|+.++.++ .|++||..+++ ...+..+...+....+ +++.++++.. .++.|.+||+.++.
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 89999999999998887666 68888765554 4555666666677767 5556444444 25789999998765
Q ss_pred E---EEEeec--CCCeEEEEeeCCc-eEEEeCCCcEEEeeCC-CCCCceeeecCCcceeccccccccccccCCCCCcccC
Q 046871 335 S---LLLCTG--EHPILQLALHDDN-IWVATTDSSVHRWPAE-GRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSR 407 (764)
Q Consensus 335 ~---~~~~~~--~~~V~~l~~spd~-l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 407 (764)
. ..++.+ ...+..++++.+. +++...|+..++|.+. .+.....+..+
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-------------------------- 360 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP-------------------------- 360 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCS--------------------------
T ss_pred ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCC--------------------------
Confidence 3 344443 4457888898555 6677788888888654 22222222111
Q ss_pred CCCCCccccCCCCceEeEEecCCcEEE----EeeCCCcEEEEEccccEE
Q 046871 408 FKEPNFTIPGIPGIVQHEILNNRRHVL----TKDAAGSVKLWEITRGVV 452 (764)
Q Consensus 408 ~~~~~~~i~g~~~i~~~~~s~dg~~l~----t~s~dG~V~lWdi~tg~~ 452 (764)
+...+..+.+++|+..|+ +....++|++||+.+|+.
T Consensus 361 ---------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 361 ---------GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ---------SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ---------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 111233345566777666 334467999999998764
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=5.3e-12 Score=129.63 Aligned_cols=212 Identities=12% Similarity=0.048 Sum_probs=165.1
Q ss_pred eCCCeEEEEeCCCcEEEecCCCCCeeeeeccccC-CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcC
Q 046871 93 VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHS-DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMED 171 (764)
Q Consensus 93 s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~-~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~ 171 (764)
+|++.|++++.|+.|.+||. .+++.+..+..+. ..+.++++. +++++++ +.++.|..||. ++.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~----------- 66 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAAT-KAGEILF--SYSKGAKMITR-DGR----------- 66 (276)
T ss_dssp CCCEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSC-----------
T ss_pred CCCcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCC-----------
Confidence 45668999999999999995 5688888887665 468889999 6888888 34677999998 431
Q ss_pred CcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCC-CCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC
Q 046871 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGH-KESVYALAMNDSGNLLVSGGT-EKVVRVWDPRTG 249 (764)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~l~sgs~-dg~I~iwd~~~~ 249 (764)
.+..+..+ ...+.++.+.++|+++++.+. ++.|..+|. +|
T Consensus 67 -------------------------------------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G 108 (276)
T 3no2_A 67 -------------------------------------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KG 108 (276)
T ss_dssp -------------------------------------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TS
T ss_pred -------------------------------------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CC
Confidence 11112222 245788999999999999887 888888886 78
Q ss_pred ceeEEec------cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 250 SKTIKLR------GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 250 ~~~~~l~------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
+.+.++. .+......+++.++|+++++.+.++.|..||.. |+.+.++..+ ..+.++...++++.+++++.++
T Consensus 109 k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 109 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTS
T ss_pred CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCC
Confidence 8777664 222345567889999999999999999999997 9999998764 4566788899999999999888
Q ss_pred cEEEEeCCCCeEEEEeecC-------CCeEEEEeeCCc-eEEEeC
Q 046871 324 SLYLTDLATRESLLLCTGE-------HPILQLALHDDN-IWVATT 360 (764)
Q Consensus 324 ~I~iwd~~~~~~~~~~~~~-------~~V~~l~~spd~-l~~~s~ 360 (764)
.|..+|..+|+.+..+... ..+..++..+++ +++++.
T Consensus 187 ~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 187 CFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred eEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9999999999998887632 126788888888 666654
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=3.7e-11 Score=125.49 Aligned_cols=237 Identities=11% Similarity=0.098 Sum_probs=165.0
Q ss_pred CCCeeEEEeecccccCCCcEEEE-------EeCCCcEEEEeCCCCCCccceeec-----ccccceeEEEEeCC-CeEEEE
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFT-------GSRDGTLKRWSLADDVGSCSATFE-----SHVDWVNDAVLVGD-NTLVSC 101 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~s-------gs~Dg~I~iWd~~~~~~~~~~~l~-----~h~~~V~~v~~s~d-~~l~s~ 101 (764)
-....+++| ++++.++++ +..++.|.+||..+++ . ..+. ++...+.++++.++ +.+..+
T Consensus 17 ~~~~~~~~~-----~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 17 IPGAEGPVF-----DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK--K-TVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp CTTCEEEEE-----CTTSCEEEEETTCEETTEECCEEEEECTTTCC--E-EEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCCccCceE-----CCCCCEEEEEeccccCCCCCCEEEEEeCCCCc--E-EEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 345688998 688888877 5778999999987643 2 2222 25567899999999 877766
Q ss_pred eCCCcEEEecCCCCCeeeee-ccc----cCCceEEEEEecCCCcEEEEEeCC---------------CeEEEEeCCCCCC
Q 046871 102 SSDTTLKTWNCSSDGTCIRT-LRQ----HSDYVTCLAAAEKNSNIVASGGLG---------------AEVFIWDIEAALA 161 (764)
Q Consensus 102 s~Dg~V~vWd~~~~~~~~~~-l~~----h~~~V~~l~~~p~~~~~lasg~~d---------------g~I~iwdl~~~~~ 161 (764)
+....|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||.. +
T Consensus 89 ~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-- 162 (314)
T 1pjx_A 89 DMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-- 162 (314)
T ss_dssp ETTTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--
T ss_pred ECCCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-C--
Confidence 666689999964 444322 211 12457899999 677777766554 344444432 1
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc----CCCCEEEEE-e
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN----DSGNLLVSG-G 236 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s----p~g~~l~sg-s 236 (764)
.. .....+......++++ ++++.++.+ .
T Consensus 163 ----------------------------------------------~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~ 195 (314)
T 1pjx_A 163 ----------------------------------------------QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp ----------------------------------------------CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred ----------------------------------------------CE-EEeccCCCCcceEEEecccCCCCCEEEEEEC
Confidence 00 0011122345788999 998765554 5
Q ss_pred CCCeEEEEeCC-CCc-----eeEEeccCC-cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEE
Q 046871 237 TEKVVRVWDPR-TGS-----KTIKLRGHT-DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAS 309 (764)
Q Consensus 237 ~dg~I~iwd~~-~~~-----~~~~l~~h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~ 309 (764)
.++.|.+||.. +++ ....+..+. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|
T Consensus 196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~ 275 (314)
T 1pjx_A 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF 275 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE
Confidence 67899999976 443 223344443 56789999999998888878899999999878887778777788999999
Q ss_pred cCCCCEEE-EecCCCcEEEEeCCC
Q 046871 310 TPTFSHVY-SGGRDLSLYLTDLAT 332 (764)
Q Consensus 310 spd~~~l~-sgs~Dg~I~iwd~~~ 332 (764)
+|+++.|+ +...++.|..|++..
T Consensus 276 ~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 276 KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999555 555678899999864
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=8.5e-10 Score=113.96 Aligned_cols=234 Identities=9% Similarity=0.012 Sum_probs=165.1
Q ss_pred cccceeEEEEeCCCeEEEE-eCCCcEEEecCCCCCeeee-eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 046871 83 HVDWVNDAVLVGDNTLVSC-SSDTTLKTWNCSSDGTCIR-TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAAL 160 (764)
Q Consensus 83 h~~~V~~v~~s~d~~l~s~-s~Dg~V~vWd~~~~~~~~~-~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~ 160 (764)
....+.++++.+++.+..+ ..++.|.+|+.. ++... .+..+...+.++++. +++.++++...++.|..||.. +.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CC
Confidence 3456788999998855444 467899999964 33322 233344678899998 677777777667889999876 21
Q ss_pred CCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 046871 161 APSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKV 240 (764)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~ 240 (764)
.. ..........+.++++.++|+++++...++.
T Consensus 94 ~~-----------------------------------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 126 (300)
T 2qc5_A 94 FT-----------------------------------------------EYPLPQPDSGPYGITEGLNGDIWFTQLNGDR 126 (300)
T ss_dssp EE-----------------------------------------------EEECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred eE-----------------------------------------------EecCCCCCCCCccceECCCCCEEEEccCCCe
Confidence 10 0011112356889999999998888777889
Q ss_pred EEEEeCCCCceeE-EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEE-EeeecCceEEEEEcCCCCEEEE
Q 046871 241 VRVWDPRTGSKTI-KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHS-YAVHTDSVWALASTPTFSHVYS 318 (764)
Q Consensus 241 I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~-l~~h~~~V~~l~~spd~~~l~s 318 (764)
|..||.. ++... .+......+.+++++++|+..++...++.|..||. +++.... ...+...+..+++++++.++++
T Consensus 127 i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 127 IGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp EEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred EEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence 9999987 65442 23334567899999999997776666789999998 5554432 1123456889999999987777
Q ss_pred ecCCCcEEEEeCCCCeEEEE-ee-cCCCeEEEEeeCCc-eEEEeC-CCcEEEeeCC
Q 046871 319 GGRDLSLYLTDLATRESLLL-CT-GEHPILQLALHDDN-IWVATT-DSSVHRWPAE 370 (764)
Q Consensus 319 gs~Dg~I~iwd~~~~~~~~~-~~-~~~~V~~l~~spd~-l~~~s~-dg~I~iwd~~ 370 (764)
....+.|.+|+. ++..... .. ....+.++++++++ +++++. ++.|.+|+..
T Consensus 205 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 777788999998 4544332 22 34568899999998 888875 5889999873
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=9.1e-12 Score=146.85 Aligned_cols=275 Identities=13% Similarity=0.053 Sum_probs=171.1
Q ss_pred cCCCcEEEEEeCCCc---EEEEeCCCC---CCcccee------ecccccceeEEEEeCCC-eEEEEeCC-----CcEEEe
Q 046871 49 SNGVDYLFTGSRDGT---LKRWSLADD---VGSCSAT------FESHVDWVNDAVLVGDN-TLVSCSSD-----TTLKTW 110 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~---I~iWd~~~~---~~~~~~~------l~~h~~~V~~v~~s~d~-~l~s~s~D-----g~V~vW 110 (764)
+|+|++++....++. -.+|-.... .+....- -.+|...+..+.|+||| +|+.++.+ .+|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 478998887654433 455544321 1221111 12344578899999998 66655443 359999
Q ss_pred cCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCe--------------EEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 111 NCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE--------------VFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 111 d~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~--------------I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
|+. +++.+.. ..+...+..++|+ ++ +.|+.++.++. |++|++.++...
T Consensus 195 dl~-tg~~~~~-~~~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------------- 256 (741)
T 1yr2_A 195 GVA-DGKPLAD-ELKWVKFSGLAWL-GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-------------- 256 (741)
T ss_dssp ETT-TCCEEEE-EEEEEESCCCEES-TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG--------------
T ss_pred ECC-CCCCCCc-cCCCceeccEEEE-CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh--------------
Confidence 984 4544332 1122223578899 66 77777766543 777777643100
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC--
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK-----VVRVWDPRTG-- 249 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-----~I~iwd~~~~-- 249 (764)
...+.....+...+..+.|+|||++|+..+.++ .|++||+.++
T Consensus 257 ------------------------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 257 ------------------------------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp ------------------------------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred ------------------------------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 001111222334578999999999988877544 8999999877
Q ss_pred ceeEEeccCCcCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC--eeeEEEeeecCceEEEEEcCCCCEEEEecCCC
Q 046871 250 SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD----SMIRLWDLGQQ--RCIHSYAVHTDSVWALASTPTFSHVYSGGRDL 323 (764)
Q Consensus 250 ~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D----g~I~iwdl~~~--~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg 323 (764)
+....+..+...+.... +|+|+.|+..+.+ +.|.+||+.++ +....+..+...+..+.++ ++.++++...|+
T Consensus 307 ~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg 384 (741)
T 1yr2_A 307 GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA 384 (741)
T ss_dssp CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT
T ss_pred cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 32455655665555553 4899988877764 45999999874 3333444445556677887 566778888898
Q ss_pred cEEEEeCC-CCeEEEEee--cCCCeEEEEeeCCc--eEEE-e---CCCcEEEeeCCCCC
Q 046871 324 SLYLTDLA-TRESLLLCT--GEHPILQLALHDDN--IWVA-T---TDSSVHRWPAEGRN 373 (764)
Q Consensus 324 ~I~iwd~~-~~~~~~~~~--~~~~V~~l~~spd~--l~~~-s---~dg~I~iwd~~~~~ 373 (764)
..++|.+. ++.....+. ....+..+.++|++ ++.. + ..++|++||+.+++
T Consensus 385 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 385 KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87776554 344444444 35668889999987 4432 2 24789999998765
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=6.5e-10 Score=119.20 Aligned_cols=271 Identities=8% Similarity=-0.039 Sum_probs=181.5
Q ss_pred cCCCcEEEEEeC--CC---cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe----------CCCcEEEecC
Q 046871 49 SNGVDYLFTGSR--DG---TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS----------SDTTLKTWNC 112 (764)
Q Consensus 49 S~d~~~L~sgs~--Dg---~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s----------~Dg~V~vWd~ 112 (764)
+|+++++++... .. .|.++|..+ ++.+.++.....+ .++++||+ +++.+. .++.|.+||.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCC--CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 478888887753 22 889999988 5566666654444 89999998 555554 3678999997
Q ss_pred CCCCeeeeecccc-------CCceEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 113 SSDGTCIRTLRQH-------SDYVTCLAAAEKNSNIVASGGL--GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 113 ~~~~~~~~~l~~h-------~~~V~~l~~~p~~~~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
.+.+.+..+... ......++++ +++++|+++.. ++.|.++| .+++..
T Consensus 105 -~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~--------------------- 160 (373)
T 2mad_H 105 -VTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSD--------------------- 160 (373)
T ss_pred -CCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEE---------------------
Confidence 345555544221 1234588999 78888888764 47899999 764211
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEec-----c
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTIKLR-----G 257 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~l~-----~ 257 (764)
........ ++.+.|++ +.+++.+.||.+.++|. +++...... .
T Consensus 161 ---------------------------~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~ 209 (373)
T 2mad_H 161 ---------------------------DQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT 209 (373)
T ss_pred ---------------------------eEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence 01000111 13344544 45667778899999999 877663321 1
Q ss_pred CCcCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eeEEEeee----------cCceEEEEEcCCCCEEEEecC---
Q 046871 258 HTDNI-RSLLLDSTGRYCLSGSSDSMIRLWDLGQQR--CIHSYAVH----------TDSVWALASTPTFSHVYSGGR--- 321 (764)
Q Consensus 258 h~~~V-~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~--~~~~l~~h----------~~~V~~l~~spd~~~l~sgs~--- 321 (764)
...++ ....+.+++..++..+.++.+.+.|+..+. .+..+... ......++++|+++.++.+..
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 11221 234566766665555578899999996542 23333211 122445789999998887643
Q ss_pred -------CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc---eEEEe-CCCcEEEeeCCCCCCceee
Q 046871 322 -------DLSLYLTDLATRESLLLCTGEHPILQLALHDDN---IWVAT-TDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 322 -------Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~---l~~~s-~dg~I~iwd~~~~~~~~~~ 378 (764)
++.|.++|..+++.+..+.......+++|+||+ ++++. .++.|.+||+.+++.++.+
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999999999888877789999999998 56665 4899999999999887763
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1.5e-11 Score=144.97 Aligned_cols=247 Identities=14% Similarity=0.056 Sum_probs=159.3
Q ss_pred CCCCCeeEEEeecccccCCCcEEEEEeCC-----CcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCc-
Q 046871 33 KHCAGINCLAVLKSSVSNGVDYLFTGSRD-----GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTT- 106 (764)
Q Consensus 33 gH~~~V~~l~~~~~~~S~d~~~L~sgs~D-----g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~- 106 (764)
+|...+.+++| ||||++||.++.+ ..|++||+.+++ .+. ...+...+..++|+||..|+.++.|+.
T Consensus 160 ~~~~~~~~~~~-----SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~-~~~~~~~~~~~~wspD~~l~~~~~~~~~ 231 (741)
T 1yr2_A 160 DGATALDAWAA-----SDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLA-DELKWVKFSGLAWLGNDALLYSRFAEPK 231 (741)
T ss_dssp ---EEEEEEEE-----CTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEE-EEEEEEESCCCEESTTSEEEEEECCCC-
T ss_pred CCCEEEEeEEE-----CCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCC-ccCCCceeccEEEECCCEEEEEEecCcc
Confidence 44446777777 8999999877543 359999999843 322 222222346789999876777766554
Q ss_pred -------------EEEecCCCCC---eeeeeccccCCceEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCCC
Q 046871 107 -------------LKTWNCSSDG---TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA-----EVFIWDIEAALAPSKS 165 (764)
Q Consensus 107 -------------V~vWd~~~~~---~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg-----~I~iwdl~~~~~~~~~ 165 (764)
|++|++.... ..+.....+...+..+.|+ +++++|+..+.++ .|++||+.++..
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---- 306 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKI---- 306 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEE----
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCC----
Confidence 8899974322 1232333344468899999 7888777766443 899999875310
Q ss_pred CCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC----CCeE
Q 046871 166 GDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT----EKVV 241 (764)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~----dg~I 241 (764)
.....+..+...+.... +|+|+.|+..+. ++.|
T Consensus 307 ------------------------------------------~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 307 ------------------------------------------GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp ------------------------------------------CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEE
T ss_pred ------------------------------------------cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEE
Confidence 00011222233333333 478888887765 4569
Q ss_pred EEEeCCCC--ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeeeEEEeee-cCceEEEEEcCCCCEEE
Q 046871 242 RVWDPRTG--SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG-QQRCIHSYAVH-TDSVWALASTPTFSHVY 317 (764)
Q Consensus 242 ~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~-~~~~~~~l~~h-~~~V~~l~~spd~~~l~ 317 (764)
.+||+.++ +....+..+...+..+.++ ++.++++...|+..+||.+. +++....+..+ .+.+..+.++|+++.|+
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 99999875 3333344455566778887 56678888889987777554 46666666653 56788999999988666
Q ss_pred ----EecCCCcEEEEeCCCCeEE
Q 046871 318 ----SGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 318 ----sgs~Dg~I~iwd~~~~~~~ 336 (764)
+....++|++||+.+++..
T Consensus 423 ~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 423 LSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp EEEEETTEEEEEEEEETTTTEEE
T ss_pred EEEcCCCCCCEEEEEECCCCcEE
Confidence 3334588999999988743
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=9.2e-10 Score=118.00 Aligned_cols=263 Identities=9% Similarity=-0.024 Sum_probs=172.2
Q ss_pred cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe----------CCCeEEEEeCCCCCCCCCCCCCCcCCcCc
Q 046871 106 TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG----------LGAEVFIWDIEAALAPSKSGDAMEDDCST 175 (764)
Q Consensus 106 ~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 175 (764)
+|.++|. .+++.+..+.....+ .++++ +++++++.+. .++.|.+||..+.........
T Consensus 48 ~v~v~D~-~t~~~~~~i~~g~~p--~i~~s-pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~-------- 115 (373)
T 2mad_H 48 QQWVLDA-GSGSILGHVNGGFLP--NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-------- 115 (373)
T ss_pred EEEEEEC-CCCeEEEEecCCCCC--CeEEC-CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC--------
Confidence 8899997 457777766644443 89999 7788887775 367899999976422110000
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeE
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT--EKVVRVWDPRTGSKTI 253 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~--dg~I~iwd~~~~~~~~ 253 (764)
+.... . .+......++++|||++|+++.. ++.|.++| .+++.+.
T Consensus 116 -------------------------------~~~~~-~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 116 -------------------------------PDAPR-F-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred -------------------------------CCccc-c-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 00000 0 00123458899999999998874 57899999 9998887
Q ss_pred E-eccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeeEEEe-----eecCc-eEEEEEcCCCCEEEEecCCCcE
Q 046871 254 K-LRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHSYA-----VHTDS-VWALASTPTFSHVYSGGRDLSL 325 (764)
Q Consensus 254 ~-l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~~~~~l~-----~h~~~-V~~l~~spd~~~l~sgs~Dg~I 325 (764)
. +... . ++.+.|++ +.+++.+.||.+.++|. +++.+.... ....+ .....+.+++..++..+.++.+
T Consensus 162 ~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v 236 (373)
T 2mad_H 162 QLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKI 236 (373)
T ss_pred EEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceE
Confidence 7 5422 2 24455655 45667778999999999 887664322 11122 1234566666555544578899
Q ss_pred EEEeCCCCeE--EEEeec-----------CCCeEEEEeeCCc--eEEEeC----------CCcEEEeeCCCCCCceeeec
Q 046871 326 YLTDLATRES--LLLCTG-----------EHPILQLALHDDN--IWVATT----------DSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 326 ~iwd~~~~~~--~~~~~~-----------~~~V~~l~~spd~--l~~~s~----------dg~I~iwd~~~~~~~~~~~~ 380 (764)
.+.|+.++.. +..+.. ......+.+++++ ++++.. ++.|.++|..+.+.+..+..
T Consensus 237 ~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~ 316 (373)
T 2mad_H 237 LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL 316 (373)
T ss_pred EEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC
Confidence 9999976532 222211 2234457788887 666543 35799999988877666542
Q ss_pred CCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc-EEEEee-CCCcEEEEEccccEEeeec
Q 046871 381 GGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR-HVLTKD-AAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 381 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~-~l~t~s-~dG~V~lWdi~tg~~i~~~ 456 (764)
. .....++|++||+ +++++. .++.|.+||+.+++.+++.
T Consensus 317 g-------------------------------------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 317 G-------------------------------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred C-------------------------------------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 1 1235678899999 777776 5899999999999999874
No 204
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=2e-09 Score=115.74 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=173.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeeccc---------ccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeec
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESH---------VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTL 122 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h---------~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l 122 (764)
+..|++++.++.|..+|..++ +.+-.+... ...+.+.....++.++.++.++.|..+|. .+++..-..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~-~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNT-SDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEET-TTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEEC-CCCCEEEEE
Confidence 678888888999999999884 444333321 22333333334578888999999999996 456655444
Q ss_pred cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccc
Q 046871 123 RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHT 202 (764)
Q Consensus 123 ~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 202 (764)
............. +..++.++.++.|..+|..++...-..
T Consensus 130 ~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~------------------------------------- 169 (376)
T 3q7m_A 130 KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTV------------------------------------- 169 (376)
T ss_dssp ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEE-------------------------------------
T ss_pred eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEE-------------------------------------
Confidence 3322221122233 457778888999999999875322110
Q ss_pred cCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcC----eE---EEEEcC--CCCE
Q 046871 203 SQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN----IR---SLLLDS--TGRY 273 (764)
Q Consensus 203 ~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~----V~---~l~~sp--dg~~ 273 (764)
.... ........... ... +..++.++.++.|..+|..+++.+......... +. .+...| .+..
T Consensus 170 -~~~~-~~~~~~~~~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (376)
T 3q7m_A 170 -NLDM-PSLSLRGESAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGV 241 (376)
T ss_dssp -ECCC------CCCCCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTE
T ss_pred -eCCC-CceeecCCCCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCE
Confidence 0000 00000011111 111 456788888999999999999988776532110 00 010111 2567
Q ss_pred EEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec--CCCeEEEEee
Q 046871 274 CLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG--EHPILQLALH 351 (764)
Q Consensus 274 l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~s 351 (764)
++.++.++.+..+|..+++.+..... .....+.. ++..++.++.++.|..+|..+++.+..... ...+......
T Consensus 242 v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 317 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY 317 (376)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE
T ss_pred EEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE
Confidence 88888899999999999998766542 33444444 356788888899999999999998776652 2233444455
Q ss_pred CCceEEEeCCCcEEEeeCCCCCCceeee
Q 046871 352 DDNIWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 352 pd~l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
.+.+++++.+|.|.++|..+++....+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 5559999999999999999987655443
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=1.7e-10 Score=122.29 Aligned_cols=274 Identities=11% Similarity=0.054 Sum_probs=185.3
Q ss_pred cCCCcEEEEEeC-----CCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe----------CCCcEEEecC
Q 046871 49 SNGVDYLFTGSR-----DGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS----------SDTTLKTWNC 112 (764)
Q Consensus 49 S~d~~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s----------~Dg~V~vWd~ 112 (764)
.|+++.+++... ++.|.+.|..+ .+.+.++.....+ . +.++||+ +++.++ .++.|.+||.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 589999998865 67999999988 6677777655554 3 9999997 555544 3678999997
Q ss_pred CCCCeeeeecccc-------CCceEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 113 SSDGTCIRTLRQH-------SDYVTCLAAAEKNSNIVASGGL--GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 113 ~~~~~~~~~l~~h-------~~~V~~l~~~p~~~~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
.+.+.+..+.-. ......++|+ +++++++++.. ++.|.++|+.+.+..
T Consensus 117 -~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv--------------------- 173 (386)
T 3sjl_D 117 -VTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFK--------------------- 173 (386)
T ss_dssp -TTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEE---------------------
T ss_pred -CCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEE---------------------
Confidence 456666665321 1245678999 78888877764 689999999874221
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeccC----
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT-GSKTIKLRGH---- 258 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h---- 258 (764)
..+.. .+ . ...+....+.+++.+.||.+.+.++.+ ++.......+
T Consensus 174 ---------------------------~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 174 ---------------------------RMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp ---------------------------EEEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred ---------------------------EEEEC-CC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 11110 01 0 112222345666777788888888765 4442221111
Q ss_pred CcCeE-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCe--eeEEEe----------eecCceEEEEEcCCCCEEEEecC---
Q 046871 259 TDNIR-SLLLD-STGRYCLSGSSDSMIRLWDLGQQR--CIHSYA----------VHTDSVWALASTPTFSHVYSGGR--- 321 (764)
Q Consensus 259 ~~~V~-~l~~s-pdg~~l~sgs~Dg~I~iwdl~~~~--~~~~l~----------~h~~~V~~l~~spd~~~l~sgs~--- 321 (764)
..++. ...|. ++|++++ .+.+|+|.+.|+.... .+..+. ...+....++++++++.++....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 12221 23554 6776555 5558999999997653 333332 11223445778999999887643
Q ss_pred -------CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc---eEEEeC-CCcEEEeeCCCCCCceeeec
Q 046871 322 -------DLSLYLTDLATRESLLLCTGEHPILQLALHDDN---IWVATT-DSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 322 -------Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~---l~~~s~-dg~I~iwd~~~~~~~~~~~~ 380 (764)
.+.|.+.|+.+++.+..+....++..|++++|+ |+++.. ++.|.++|..+++.++.+..
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 257999999999999999888889999999997 566554 89999999999998888764
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=6.8e-10 Score=115.76 Aligned_cols=241 Identities=5% Similarity=0.024 Sum_probs=160.4
Q ss_pred ccccceeEEEEeCCCeEE-E-------EeCCCcEEEecCCCCCeeeeecc----ccCCceEEEEEecCC-CcEEEEEeCC
Q 046871 82 SHVDWVNDAVLVGDNTLV-S-------CSSDTTLKTWNCSSDGTCIRTLR----QHSDYVTCLAAAEKN-SNIVASGGLG 148 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~~l~-s-------~s~Dg~V~vWd~~~~~~~~~~l~----~h~~~V~~l~~~p~~-~~~lasg~~d 148 (764)
..-....+++|.+++.++ + ...++.|.+||.. +++...... ++...+.++++. ++ ++++++.. .
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~i~~~-~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK-TGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVADM-R 91 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT-TCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEET-T
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC-CCcEEEEEecccCCCCCCCceEEEe-cCCCcEEEEEC-C
Confidence 334456789999887544 4 3678899999963 344322111 245678999998 55 55555444 4
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC
Q 046871 149 AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS 228 (764)
Q Consensus 149 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 228 (764)
+.|.+||.. +....... . .........+.+++++++
T Consensus 92 ~~l~~~d~~-g~~~~~~~-----------------------------------~--------~~~~~~~~~~~~i~~d~~ 127 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAK-----------------------------------K--------DSEGRRMQGCNDCAFDYE 127 (314)
T ss_dssp TEEEEEETT-SCEEECCS-----------------------------------B--------CTTSCBCBCCCEEEECTT
T ss_pred CCEEEEeCC-CCEEEEEe-----------------------------------c--------cCCCccccCCcCEEECCC
Confidence 478999986 32110000 0 000011235778999999
Q ss_pred CCEEEEEeCC---------------CeEEEEeCCCCceeEEeccCCcCeEEEEEc----CCCCEEEEE-eCCCcEEEEeC
Q 046871 229 GNLLVSGGTE---------------KVVRVWDPRTGSKTIKLRGHTDNIRSLLLD----STGRYCLSG-SSDSMIRLWDL 288 (764)
Q Consensus 229 g~~l~sgs~d---------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~l~sg-s~Dg~I~iwdl 288 (764)
|+++++...+ +.|..||.. ++... +..+......++++ ++++.|+.+ ..++.|.+||+
T Consensus 128 g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~ 205 (314)
T 1pjx_A 128 GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI 205 (314)
T ss_dssp SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEEC
Confidence 9888777655 578888876 55433 32334557889999 999766555 56789999998
Q ss_pred C-CCe-----eeEEEeeec-CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc--eEEE
Q 046871 289 G-QQR-----CIHSYAVHT-DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-EHPILQLALHDDN--IWVA 358 (764)
Q Consensus 289 ~-~~~-----~~~~l~~h~-~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~--l~~~ 358 (764)
. +++ ....+..+. ..+..++++++|.++++...++.|.+||..+++.+..+.. ...+.++++++++ |+++
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 206 KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence 6 443 222333333 5678999999999888877889999999987776555543 3678999999988 6666
Q ss_pred eC-CCcEEEeeCCC
Q 046871 359 TT-DSSVHRWPAEG 371 (764)
Q Consensus 359 s~-dg~I~iwd~~~ 371 (764)
+. ++.|..|++..
T Consensus 286 ~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 286 EHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTTEEEEEECSS
T ss_pred eCCCCeEEEEeCCC
Confidence 54 57899998864
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.30 E-value=4.5e-10 Score=119.06 Aligned_cols=256 Identities=12% Similarity=0.058 Sum_probs=173.0
Q ss_pred EEeecccccCCCcEEEEEe----------CCCcEEEEeCCCCCCccceeeccc-------ccceeEEEEeCCC-eEEEEe
Q 046871 41 LAVLKSSVSNGVDYLFTGS----------RDGTLKRWSLADDVGSCSATFESH-------VDWVNDAVLVGDN-TLVSCS 102 (764)
Q Consensus 41 l~~~~~~~S~d~~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~-~l~s~s 102 (764)
+++ ||||++|+++. .++.|.+||..+ .+.+.++... ......+.|+||+ +++.+.
T Consensus 83 va~-----spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan 155 (386)
T 3sjl_D 83 PVV-----ADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 155 (386)
T ss_dssp EEE-----CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred EEE-----CCCCCEEEEEcccccccccCCCCCEEEEEECCC--CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEE
Confidence 666 89999998875 367899999998 5556665421 1245679999998 666665
Q ss_pred C--CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 103 S--DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 103 ~--Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
. ++.|.++|+ ..++.+.++... + |....|...+.+++.+.||.+.+.++.+.........
T Consensus 156 ~~~~~~VsVID~-~t~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~------------- 217 (386)
T 3sjl_D 156 FSPAPAVGVVDL-EGKAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT------------- 217 (386)
T ss_dssp CSSSCEEEEEET-TTTEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-------------
T ss_pred cCCCCeEEEEEC-CCCcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-------------
Confidence 3 689999997 557777776432 1 1222335667777888899999999875211100000
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEE-EEEEc-CCCCEEEEEeCCCeEEEEeCCCCc--eeEEec
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVY-ALAMN-DSGNLLVSGGTEKVVRVWDPRTGS--KTIKLR 256 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~-~l~~s-p~g~~l~sgs~dg~I~iwd~~~~~--~~~~l~ 256 (764)
.. +......+. ...|. ++|++++ .+.+|.|.+.|+.+.. .+..+.
T Consensus 218 ------------------~~------------~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 218 ------------------EV------------FHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ------------------CC------------CSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred ------------------ce------------eccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence 00 000001111 12443 5675544 5568999999987654 222221
Q ss_pred ----------cCCcCeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCC-E
Q 046871 257 ----------GHTDNIRSLLLDSTGRYCLSGSS----------DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFS-H 315 (764)
Q Consensus 257 ----------~h~~~V~~l~~spdg~~l~sgs~----------Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~-~ 315 (764)
-..+....++++++++.++.... .++|.++|+.+++.+.++... ..+++|++++|++ +
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPL 345 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeE
Confidence 01234456788999999887653 257999999999999988743 3788999999997 6
Q ss_pred EEEe-cCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCC
Q 046871 316 VYSG-GRDLSLYLTDLATRESLLLCTGEHPILQLALHDD 353 (764)
Q Consensus 316 l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd 353 (764)
|++. ..++.|.++|..+++.+..+.....-..|.+++|
T Consensus 346 ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 7664 5589999999999999999887777777777766
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=1.1e-09 Score=119.00 Aligned_cols=237 Identities=11% Similarity=0.043 Sum_probs=157.4
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCC--cEEEecC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDT--TLKTWNC 112 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg--~V~vWd~ 112 (764)
....+|++ +++++++++...++.|++||.+++ ........ ..... ++|++++ .|+++..++ .|.+|+.
T Consensus 131 ~~P~~la~-----d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAA-----VGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEE-----CSTTEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEE-----eCCCCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence 35678888 688887777777899999999863 32222222 33334 8999987 677777765 7888885
Q ss_pred CCCCeeeeec----cccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 113 SSDGTCIRTL----RQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 113 ~~~~~~~~~l----~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
.. +.....+ ..+...+.+++++|.++.+++ +..++.|+.||..+.....
T Consensus 202 ~~-~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~------------------------- 254 (409)
T 3hrp_A 202 AS-GWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTL------------------------- 254 (409)
T ss_dssp GG-TTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEE-------------------------
T ss_pred CC-CceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEE-------------------------
Confidence 33 2222222 224466788999943555444 7778899999987532100
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcE-E-EEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeccCC------
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESV-Y-ALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT------ 259 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V-~-~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~------ 259 (764)
.... ...++...- . .++|+|+ +.++++-..++.|+.||.... +..+.++.
T Consensus 255 ------------~~~~-------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~ 313 (409)
T 3hrp_A 255 ------------IKQL-------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQ 313 (409)
T ss_dssp ------------EEEC-------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCB
T ss_pred ------------Eecc-------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcC
Confidence 0000 000111111 2 8999994 666666677889999997643 33333332
Q ss_pred ---------cCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeeEEEeee---------------cCceEEEEEcCCCC
Q 046871 260 ---------DNIRSLLLDSTGRYCLSGS-SDSMIRLWDLGQQRCIHSYAVH---------------TDSVWALASTPTFS 314 (764)
Q Consensus 260 ---------~~V~~l~~spdg~~l~sgs-~Dg~I~iwdl~~~~~~~~l~~h---------------~~~V~~l~~spd~~ 314 (764)
.....++++++|+++++-+ .++.|+.||+.++. +.++.++ -.....+++++++.
T Consensus 314 dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ 392 (409)
T 3hrp_A 314 DGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG 392 (409)
T ss_dssp CEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred CCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence 3478999999999777777 78999999987776 4455444 24588999999988
Q ss_pred EEEEecCCCcEEEEeC
Q 046871 315 HVYSGGRDLSLYLTDL 330 (764)
Q Consensus 315 ~l~sgs~Dg~I~iwd~ 330 (764)
++++-..++.|+.+++
T Consensus 393 lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 393 YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEESTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEEe
Confidence 7778778888888765
No 209
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=8.8e-10 Score=127.71 Aligned_cols=307 Identities=12% Similarity=0.087 Sum_probs=188.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeeccccc----------ce-eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeee
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD----------WV-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~----------~V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~ 120 (764)
+..|++++.++.|..+|..+ ++.+-++..... .+ ..+++ .++.++.++.|+.|..+|. .+++.+-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~-~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT--GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDA-ATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT--TEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEET-TTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCC--CcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEEC-CCCCEEe
Confidence 56788888889999999988 555544443211 01 12333 2468888999999999996 5566665
Q ss_pred ecccc-C----CceEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 121 TLRQH-S----DYVTC-LAAAEKNSNIVASGGL------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 121 ~l~~h-~----~~V~~-l~~~p~~~~~lasg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
.+..+ . ..+.+ .... +..++.++. ++.|+.+|..+++..-......... .......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~---------~~~~~~~ 220 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP---------SKPFEDE 220 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT---------TSCCSSH
T ss_pred eecCCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc---------ccccccc
Confidence 55433 1 11111 1122 344555443 6899999998875442111000000 0000000
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCC
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK-------------------VVRVWDPRTG 249 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-------------------~I~iwd~~~~ 249 (764)
........|.. .+.. ....+.......+++++++..++.+..++ .|..+|.++|
T Consensus 221 ----~~~~g~~~w~~--~g~~-~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG 293 (677)
T 1kb0_A 221 ----SMKRAARTWDP--SGKW-WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG 293 (677)
T ss_dssp ----HHHHHHTTSCG--GGCH-HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred ----ccccccccccc--cCce-eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence 00000000100 0000 00001112223577888888888887664 5999999999
Q ss_pred ceeEEecc--CC-------cCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeeeEEEeeec----------C-ce--
Q 046871 250 SKTIKLRG--HT-------DNIRSLLLDSTG---RYCLSGSSDSMIRLWDLGQQRCIHSYAVHT----------D-SV-- 304 (764)
Q Consensus 250 ~~~~~l~~--h~-------~~V~~l~~spdg---~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~----------~-~V-- 304 (764)
+.+..++. |. .....+....+| ..++.++.+|.|+++|..+|+.+..+.... + ++
T Consensus 294 ~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~ 373 (677)
T 1kb0_A 294 KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGI 373 (677)
T ss_dssp CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeec
Confidence 99887753 21 122223333477 679999999999999999999987765221 0 01
Q ss_pred ----------------------EEEEEcCCCCEEEEecC-----------------------------------------
Q 046871 305 ----------------------WALASTPTFSHVYSGGR----------------------------------------- 321 (764)
Q Consensus 305 ----------------------~~l~~spd~~~l~sgs~----------------------------------------- 321 (764)
..++++|+..++++...
T Consensus 374 ~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 453 (677)
T 1kb0_A 374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS 453 (677)
T ss_dssp GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred cccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence 15688999888887543
Q ss_pred --CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecC
Q 046871 322 --DLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 322 --Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~ 381 (764)
.|.|..||+.+++.+....+..++....+..++ +++++.|+.+++||..+++.+..+..+
T Consensus 454 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 454 KPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp CCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 278999999999999888877666655555544 888899999999999999988777643
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=9.3e-11 Score=124.86 Aligned_cols=175 Identities=11% Similarity=0.023 Sum_probs=132.5
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 128 YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
.+..++++ +...++++|+.++ +.+|++......... ... .
T Consensus 39 ~~nlLais-~~~gll~a~~~~~-l~v~~~~~l~~~~~~----------------------------~~~----------~ 78 (388)
T 1xip_A 39 SLQNLDIS-NSKSLFVAASGSK-AVVGELQLLRDHITS----------------------------DST----------P 78 (388)
T ss_dssp CCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHHHHHHS----------------------------SSC----------C
T ss_pred cccEEEEc-CCCCEEEEeCCCE-EEEEEhhHhhhhhcc----------------------------ccc----------c
Confidence 68899999 7788999999885 677998653100000 000 0
Q ss_pred ccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 046871 208 YVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 287 (764)
........+.. |+.++| ++++|+++ .++.|++||+++.........|...+.++.+.+. .+++++.||.|.+||
T Consensus 79 ~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~d 152 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALD 152 (388)
T ss_dssp CCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEE
T ss_pred ccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEE
Confidence 00011223455 999999 89999999 8899999999888776677778888988877754 388899999999999
Q ss_pred CCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeE--EEEe------e----cCCCeEEEEeeCCc
Q 046871 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRES--LLLC------T----GEHPILQLALHDDN 354 (764)
Q Consensus 288 l~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~--~~~~------~----~~~~V~~l~~spd~ 354 (764)
+.++.... +...|.+++|+|+| ++.|..||++++|+...++. ...+ . +...|.++.|.+++
T Consensus 153 l~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 153 LRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp TTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred ccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 99877653 45689999999999 67888999999999988775 4444 2 46779999999988
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=2.7e-09 Score=116.01 Aligned_cols=234 Identities=13% Similarity=0.141 Sum_probs=155.0
Q ss_pred cceeEEEEeCCCeE-EEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCC
Q 046871 85 DWVNDAVLVGDNTL-VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA--EVFIWDIEAALA 161 (764)
Q Consensus 85 ~~V~~v~~s~d~~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg--~I~iwdl~~~~~ 161 (764)
.....++|.+++.| ++...++.|++||. ..+........ ..... ++|+ ++++.|+++..++ .|.+|+......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~-~~g~~~~~~~~-~~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISV-DDNKVTTVHPG-FKGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEET-TTTEEEEEEET-CCBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEEC-CCCEEEEeecc-CCCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCce
Confidence 35778999998854 44455689999997 33444433333 23333 8899 6788888887765 788888764311
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceec-cCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA-KGHKESVYALAMNDSGNLLVSGGTEKV 240 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~V~~l~~sp~g~~l~sgs~dg~ 240 (764)
... .... ......+.+++++|++..|+.+..++.
T Consensus 207 ~~~---------------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~ 241 (409)
T 3hrp_A 207 PTR---------------------------------------------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKN 241 (409)
T ss_dssp EEE---------------------------------------------EEECCTTSCSCCCBCEECTTSSEEEEECTTCE
T ss_pred eEE---------------------------------------------eeeccchhcCCcEEEEEeCCCCeEEEEECCCc
Confidence 000 0000 112345678899995555666777899
Q ss_pred EEEEeCCCCceeEE----eccCCcCe--EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeeEEEeeec------------
Q 046871 241 VRVWDPRTGSKTIK----LRGHTDNI--RSLLLDST-GRYCLSGSSDSMIRLWDLGQQRCIHSYAVHT------------ 301 (764)
Q Consensus 241 I~iwd~~~~~~~~~----l~~h~~~V--~~l~~spd-g~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~------------ 301 (764)
|+.||..++..... ..++...- ..++|+|+ +.++++-..++.|+.|+.... +.++.++.
T Consensus 242 I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 242 FGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREE 319 (409)
T ss_dssp EEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGG
T ss_pred EEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccc
Confidence 99999987764332 22222222 39999995 555566667889999997543 33444332
Q ss_pred ---CceEEEEEcCCCCEEEEec-CCCcEEEEeCCCCeEEEEeec---------------CCCeEEEEeeCCc-eEEEeC-
Q 046871 302 ---DSVWALASTPTFSHVYSGG-RDLSLYLTDLATRESLLLCTG---------------EHPILQLALHDDN-IWVATT- 360 (764)
Q Consensus 302 ---~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~---------------~~~V~~l~~spd~-l~~~s~- 360 (764)
.....++++|+++++++-. .++.|++|++.++........ -.....+++++++ |+++..
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 3478999999999777777 789999999888875544433 1357899999988 666654
Q ss_pred CCcEEEeeC
Q 046871 361 DSSVHRWPA 369 (764)
Q Consensus 361 dg~I~iwd~ 369 (764)
++.|+.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 567887765
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=3.7e-11 Score=127.99 Aligned_cols=179 Identities=14% Similarity=0.076 Sum_probs=136.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS-----------KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~-----------~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 287 (764)
.++.+++++...++++|+.++ +.+|++.+.+ ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 5569865332 11222 3566 999999 89999999 889999999
Q ss_pred CCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEe
Q 046871 288 LGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRW 367 (764)
Q Consensus 288 l~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iw 367 (764)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... ....|+|++|+|+|+++|..||++++|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 9887766677778888988887654 38888999999999999887654 345899999999999999999999999
Q ss_pred eCCCCCC--ceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEE
Q 046871 368 PAEGRNP--QKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLT 435 (764)
Q Consensus 368 d~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t 435 (764)
+....+. .+.+..... +. ....+...+..+.|++++.++++
T Consensus 188 ~~~~~~~~~k~~I~~Pp~-----------------------~~----~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSE-----------------------LE----ELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTEEEEEEEECCCHH-----------------------HH----TSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCCccccccceecCCcc-----------------------cc----cccCCCeeEEEEEEecCCeEEEE
Confidence 8876653 333321100 00 00113455888999999998887
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=5.5e-10 Score=130.44 Aligned_cols=244 Identities=11% Similarity=0.088 Sum_probs=156.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEE-----eCCCcEEEEeCCCCCCccceeecccccc--eeEEEEeCCC-eEEEEeC
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTG-----SRDGTLKRWSLADDVGSCSATFESHVDW--VNDAVLVGDN-TLVSCSS 103 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sg-----s~Dg~I~iWd~~~~~~~~~~~l~~h~~~--V~~v~~s~d~-~l~s~s~ 103 (764)
.+|...+..++| ||||++||-+ +.+..|++||+.+++ .+.. +... ...++|+ |+ .|+.++.
T Consensus 125 ~~~~~~l~~~~~-----SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~ 193 (693)
T 3iuj_A 125 PDGTTALDQLSF-----SRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLET---PLKDVKFSGISWL-GNEGFFYSSY 193 (693)
T ss_dssp TTSCCEEEEEEE-----CTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEE---EEEEEESCCCEEE-TTTEEEEEES
T ss_pred CCCcEEEEEEEE-----CCCCCEEEEEEecCCCceEEEEEEECCCCC--CCcc---ccCCceeccEEEe-CCCEEEEEEe
Confidence 456667888877 8999988843 333579999999843 2221 2222 3678999 86 7777777
Q ss_pred CCc-------------EEEecCCCCC---eeeeeccc-cCCceEEEEEecCCCcEEEEE-eC---CCeEEEEeCCCCCCC
Q 046871 104 DTT-------------LKTWNCSSDG---TCIRTLRQ-HSDYVTCLAAAEKNSNIVASG-GL---GAEVFIWDIEAALAP 162 (764)
Q Consensus 104 Dg~-------------V~vWd~~~~~---~~~~~l~~-h~~~V~~l~~~p~~~~~lasg-~~---dg~I~iwdl~~~~~~ 162 (764)
+.. |++|++.... .++..... |...+..+.|+ +++++|+.. +. +..|+++|+.++..
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~- 271 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENA- 271 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTC-
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCC-
Confidence 643 9999974432 23333344 55567889999 677766443 32 35899999876310
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-C---C
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-T---E 238 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~---d 238 (764)
....+..+....... ++++|..|+..+ . .
T Consensus 272 ----------------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 272 ----------------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp ----------------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred ----------------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 011122333334443 555566555443 3 3
Q ss_pred CeEEEEeCCCCce--eEEeccCCcCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeeeEEEee-ecCceEEEEEcCC
Q 046871 239 KVVRVWDPRTGSK--TIKLRGHTDNIRSLLLDSTGRYCLSGSSDS---MIRLWDLGQQRCIHSYAV-HTDSVWALASTPT 312 (764)
Q Consensus 239 g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg---~I~iwdl~~~~~~~~l~~-h~~~V~~l~~spd 312 (764)
+.|..+|+.++.. ...+..|...+. .|++++++|+....++ .|++||+..+ ....+.. +.+.+..+.++++
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d 381 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD 381 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC
Confidence 6899999988754 345666766665 8899999887766544 6899998744 4444442 3456777788888
Q ss_pred CCEEEEecCC----CcEEEEeCCCCeEEEE
Q 046871 313 FSHVYSGGRD----LSLYLTDLATRESLLL 338 (764)
Q Consensus 313 ~~~l~sgs~D----g~I~iwd~~~~~~~~~ 338 (764)
++.++....+ +.|+.||+.+++....
T Consensus 382 ~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 382 DPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp CSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred CCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 8776654433 7899999988765443
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.26 E-value=3.8e-10 Score=118.61 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=168.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEE
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTC 131 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~ 131 (764)
+..|+.++.++.|..|| .+ ++....+..+...+.++...+++.+..++.+ |..+|. +++....+.........
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~--~g~~~~~~~~~~~~~~~ 102 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TD--GSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP--DGTEKWRFDTKKAIVSD 102 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TT--SCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC--CGGGGGGSCC-----CC
T ss_pred CCeEEEEcCCCEEEEEC-CC--CcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC--CCcEEEEEECCCCcccC
Confidence 34567777888999999 66 4444444445556677777778877777666 888884 45544444333322233
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 132 LAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 132 l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
..+. +..+..++.++.|..+|.. +... .
T Consensus 103 ~~~~---~~~l~v~t~~~~l~~~d~~-g~~~------------------------------------------------~ 130 (330)
T 3hxj_A 103 FTIF---EDILYVTSMDGHLYAINTD-GTEK------------------------------------------------W 130 (330)
T ss_dssp EEEE---TTEEEEECTTSEEEEECTT-SCEE------------------------------------------------E
T ss_pred ceEE---CCEEEEEecCCEEEEEcCC-CCEE------------------------------------------------E
Confidence 3333 5567778888889999876 3111 0
Q ss_pred eccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 046871 212 AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ 291 (764)
Q Consensus 212 ~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~ 291 (764)
........+.++...+++. ++.++.++.|..+|.. ++.+..+......+.++.+.+++...+ ++ +.|..+| .++
T Consensus 131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG 204 (330)
T ss_dssp EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS
T ss_pred EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC
Confidence 0111122234455566666 6667788999999998 888777766666778888888887554 44 8899999 788
Q ss_pred eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC-CCeEEEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 292 RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE-HPILQLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 292 ~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~V~~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
+.+..+......+.++...+++. |+.++.++.|..+|. ++..+..+... ..+..+.+.+++ +++++.++.|..+|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 87777766666788888888875 555666788888874 55555544433 234456666666 999999999999985
Q ss_pred CCCCCc
Q 046871 370 EGRNPQ 375 (764)
Q Consensus 370 ~~~~~~ 375 (764)
+++..
T Consensus 283 -~g~~~ 287 (330)
T 3hxj_A 283 -DGTEK 287 (330)
T ss_dssp -TSCEE
T ss_pred -CCcEE
Confidence 44433
No 215
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.1e-09 Score=127.27 Aligned_cols=308 Identities=12% Similarity=0.083 Sum_probs=182.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeeccccc----------ce-eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeee
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD----------WV-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~----------~V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~ 120 (764)
+..|++++.++.|..+|..+ ++.+-++..+.. .+ ..+.+ .++.++.++.|+.|..+|. .+++.+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa-~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD--GRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDA-KTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEET-TTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCC--CceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEEC-CCCCEee
Confidence 56788888899999999988 555555543221 11 11222 2468889999999999996 5566554
Q ss_pred ecccc--CCceEEEEEec--CCCcEEEEEe------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 121 TLRQH--SDYVTCLAAAE--KNSNIVASGG------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 121 ~l~~h--~~~V~~l~~~p--~~~~~lasg~------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
.+... ......+..+| .++. ++.++ .++.|..||..+++..-......... ........+.
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p--------~~~~~~~~~~ 216 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDP--------KLPPEGKGME 216 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT--------TSCCCSHHHH
T ss_pred eecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCc--------cccccccccc
Confidence 43321 11101111110 1343 44443 36899999999876442211000000 0000000000
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCce
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKV-------------------VRVWDPRTGSK 251 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~-------------------I~iwd~~~~~~ 251 (764)
.. ...|. +.......+.......++++|++.+++.+..++. |..+|.++|+.
T Consensus 217 ~~-----~~~~~----g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~ 287 (689)
T 1yiq_A 217 IA-----AKTWF----GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY 287 (689)
T ss_dssp HH-----HTTCC----SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE
T ss_pred cc-----ccccC----CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce
Confidence 00 00000 0000000011111235778888888998887764 99999999999
Q ss_pred eEEecc--CC-------cCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCeeeEEEeeec-Cc---------------
Q 046871 252 TIKLRG--HT-------DNIRSLLLDSTGR---YCLSGSSDSMIRLWDLGQQRCIHSYAVHT-DS--------------- 303 (764)
Q Consensus 252 ~~~l~~--h~-------~~V~~l~~spdg~---~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-~~--------------- 303 (764)
+..++. |. .......+..+|+ .++.++.+|.++++|..+|+.+....... ..
T Consensus 288 ~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 288 VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence 988764 21 1222222233565 78899999999999999999875432110 00
Q ss_pred -----------------------eEEEEEcCCCCEEEEecC---------------------------------------
Q 046871 304 -----------------------VWALASTPTFSHVYSGGR--------------------------------------- 321 (764)
Q Consensus 304 -----------------------V~~l~~spd~~~l~sgs~--------------------------------------- 321 (764)
-..++++|+..++++...
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 447 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL 447 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence 112688898888886522
Q ss_pred ------CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCC-c-eEEEeCCCcEEEeeCCCCCCceeeecC
Q 046871 322 ------DLSLYLTDLATRESLLLCTGEHPILQLALHDD-N-IWVATTDSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 322 ------Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd-~-l~~~s~dg~I~iwd~~~~~~~~~~~~~ 381 (764)
+|.|+.||+.+++.+.......++....+... + +++++.|+.|+.||.++++.+-.+..+
T Consensus 448 ~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 448 EMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp HHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988877665554344433 4 888999999999999999987776543
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=3e-09 Score=110.36 Aligned_cols=226 Identities=11% Similarity=0.072 Sum_probs=150.4
Q ss_pred CCCeeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCC
Q 046871 35 CAGINCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~ 113 (764)
..--.+..| +++ +.++++...++.|..||..++. ...+ .....+.++++++++.|+.+. ++.|.+||..
T Consensus 12 ~~~~Egp~w-----~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~ 81 (297)
T 3g4e_A 12 CRCGESPVW-----EEVSNSLLFVDIPAKKVCRWDSFTKQ---VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWK 81 (297)
T ss_dssp CSBEEEEEE-----ETTTTEEEEEETTTTEEEEEETTTCC---EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETT
T ss_pred CccccCCeE-----ECCCCEEEEEECCCCEEEEEECCCCc---EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECC
Confidence 334567777 464 5566666778999999998743 2222 235679999999998666665 5679999963
Q ss_pred CCCeeeeeccc----cCCceEEEEEecCCCcEEEEEeCC---------CeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 114 SDGTCIRTLRQ----HSDYVTCLAAAEKNSNIVASGGLG---------AEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 114 ~~~~~~~~l~~----h~~~V~~l~~~p~~~~~lasg~~d---------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
+++....... ....+..+++. ++++++++...+ ..-.+|.+...
T Consensus 82 -~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------------------- 138 (297)
T 3g4e_A 82 -EQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFPD--------------------- 138 (297)
T ss_dssp -TTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECTT---------------------
T ss_pred -CCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEECC---------------------
Confidence 3433222111 12457889999 677766654321 22344444321
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCce-----e
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDP--RTGSK-----T 252 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~--~~~~~-----~ 252 (764)
+.. ............++|+|+++.|+ +.+.++.|.+||+ .++.. .
T Consensus 139 --------------------------g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 139 --------------------------HHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp --------------------------SCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred --------------------------CCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 000 00111223457899999998765 5556789999986 45543 2
Q ss_pred EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEc-CCCCEEEEec
Q 046871 253 IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST-PTFSHVYSGG 320 (764)
Q Consensus 253 ~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~s-pd~~~l~sgs 320 (764)
..+..+......++++++|++.++....+.|.+||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 2333344567899999999888887778899999999999999998887889999998 8888776544
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=8.8e-10 Score=118.96 Aligned_cols=266 Identities=11% Similarity=0.019 Sum_probs=175.9
Q ss_pred CcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe----------CCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 105 TTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG----------LGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 105 g~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++|.+.|. .+.+.+..+..-..+ .++++ +++++++++. .++.|.++|..+........
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-------- 166 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-------- 166 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE--------
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE--------
Confidence 69999997 567777777655555 89999 6777666664 46789999998743211000
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcee
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT--EKVVRVWDPRTGSKT 252 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~--dg~I~iwd~~~~~~~ 252 (764)
+ .... ..........++++|||++++++.. ++.|.+.|+.+++.+
T Consensus 167 -------------------------v---~g~~-----r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 167 -------------------------L---PDAP-----RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp -------------------------E---TTCC-----CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred -------------------------C---CCcc-----ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 0 0000 0000122346789999999998864 578999999999988
Q ss_pred EEeccCCcCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeeEE----EeeecCce-EEEEEcCCCCEEEEecCCCcEE
Q 046871 253 IKLRGHTDNIRSLLLDSTG-RYCLSGSSDSMIRLWDLGQQRCIHS----YAVHTDSV-WALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 253 ~~l~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwdl~~~~~~~~----l~~h~~~V-~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
.++.-.. . ....|++ +.+++.+.||++.+.++.+++.... +.....++ ..+.+.+++..++..+..+.|.
T Consensus 214 ~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ 289 (426)
T 3c75_H 214 RMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF 289 (426)
T ss_dssp EEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred EEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence 8876322 1 2333433 5566677788888888755554432 11111221 2356788888887777889999
Q ss_pred EEeCCCCeEEEE--ee-----------cCCCeEEEEeeCCc--eEEEeC----------CCcEEEeeCCCCCCceeeecC
Q 046871 327 LTDLATRESLLL--CT-----------GEHPILQLALHDDN--IWVATT----------DSSVHRWPAEGRNPQKVFQRG 381 (764)
Q Consensus 327 iwd~~~~~~~~~--~~-----------~~~~V~~l~~spd~--l~~~s~----------dg~I~iwd~~~~~~~~~~~~~ 381 (764)
+.|+........ +. .......+++++++ ++++.. ++.|.++|..+.+.+..+..+
T Consensus 290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg 369 (426)
T 3c75_H 290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG 369 (426)
T ss_dssp EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC
Confidence 999876543211 11 01122336899987 666642 357999999999888777532
Q ss_pred CcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc-EEEEee-CCCcEEEEEccccEEeeec
Q 046871 382 GSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR-HVLTKD-AAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 382 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~-~l~t~s-~dG~V~lWdi~tg~~i~~~ 456 (764)
. ....++|++||+ ++++.. .++.|.++|+.+++.++++
T Consensus 370 ~-------------------------------------~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 370 H-------------------------------------EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp E-------------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred C-------------------------------------CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 1 134567888999 888777 5999999999999999886
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.23 E-value=9e-09 Score=106.71 Aligned_cols=228 Identities=9% Similarity=0.029 Sum_probs=150.2
Q ss_pred ccccceeEEEEeCC-C-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 046871 82 SHVDWVNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAA 159 (764)
Q Consensus 82 ~h~~~V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~ 159 (764)
.+.....+..|+++ + .+++...++.|..||... +.. ..+ .....+.+++++ ++++++++ . ++.|.+||..++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~-~~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT-KQV-QRV-TMDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCE-EEE-ECSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCC-CcE-EEE-eCCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCCC
Confidence 34445667889985 4 556666788999999743 332 222 245678999999 67775554 3 567999998753
Q ss_pred CCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC--
Q 046871 160 LAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT-- 237 (764)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-- 237 (764)
.... ... .........+..++++|+|+++++...
T Consensus 84 ~~~~-------------------------------------~~~-------~~~~~~~~~~~di~~d~dG~l~~~~~~~~ 119 (297)
T 3g4e_A 84 SAVV-------------------------------------LAT-------VDNDKKNNRFNDGKVDPAGRYFAGTMAEE 119 (297)
T ss_dssp EEEE-------------------------------------EEE-------CCTTCSSEEEEEEEECTTSCEEEEEEECC
T ss_pred cEEE-------------------------------------EEe-------cCCCCCCCCCCCEEECCCCCEEEecCCcc
Confidence 2100 000 000011345788999999997665422
Q ss_pred ---------CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE-EEeCCCcEEEEeC--CCCee-----eEEEeee
Q 046871 238 ---------EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL-SGSSDSMIRLWDL--GQQRC-----IHSYAVH 300 (764)
Q Consensus 238 ---------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl--~~~~~-----~~~l~~h 300 (764)
.+.|..+|.. ++.. .+..+....+.++|+||++.|+ +.+.++.|.+||+ .++.. ...+..+
T Consensus 120 ~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~ 197 (297)
T 3g4e_A 120 TAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE 197 (297)
T ss_dssp SBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG
T ss_pred cccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC
Confidence 2345555543 3332 2333444568899999999765 4556789999987 45543 2223333
Q ss_pred cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC-CCeEEEEee-CCc--eEEEeCC
Q 046871 301 TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE-HPILQLALH-DDN--IWVATTD 361 (764)
Q Consensus 301 ~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~V~~l~~s-pd~--l~~~s~d 361 (764)
......++++++|++.++...++.|.+||..+++.+..+... ..+++++|. |++ |++++..
T Consensus 198 ~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 198 EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 456789999999988777777888999999989888777754 579999998 776 6666653
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.21 E-value=1.5e-09 Score=117.25 Aligned_cols=271 Identities=9% Similarity=0.015 Sum_probs=180.3
Q ss_pred CCCcEEEEEeCC-----CcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe----------CCCcEEEecCC
Q 046871 50 NGVDYLFTGSRD-----GTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS----------SDTTLKTWNCS 113 (764)
Q Consensus 50 ~d~~~L~sgs~D-----g~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s----------~Dg~V~vWd~~ 113 (764)
++++++++.... +.|.+.|..+ .+.+.++..-..+ .+.++||+ +++.+. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~- 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP- 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC-
Confidence 677777776543 6999999998 6777777655555 89999997 555554 3678999997
Q ss_pred CCCeeeeecccc-------CCceEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCC
Q 046871 114 SDGTCIRTLRQH-------SDYVTCLAAAEKNSNIVASGGL--GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSL 184 (764)
Q Consensus 114 ~~~~~~~~l~~h-------~~~V~~l~~~p~~~~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (764)
.+.+.+..+.-. ......++|+ +++++++++.. ++.|.+.|+.+.+...
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~--------------------- 214 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDR--------------------- 214 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEE---------------------
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEE---------------------
Confidence 456666655321 1234578899 78888888764 5789999998742211
Q ss_pred cccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEE----eccCC
Q 046871 185 PVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIK----LRGHT 259 (764)
Q Consensus 185 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~----l~~h~ 259 (764)
.+.- .+ . ....|+ ...+++.+.||.+.+.+..+++.... +....
T Consensus 215 ---------------------------~I~v-~g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~ 263 (426)
T 3c75_H 215 ---------------------------MLDV-PD-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED 263 (426)
T ss_dssp ---------------------------EEEC-CS-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred ---------------------------EEEc-CC-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence 0110 00 0 112222 24455555666666666654444321 11111
Q ss_pred cCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeee--EEEee----------ecCceEEEEEcCCCCEEEEecC-----
Q 046871 260 DNI-RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCI--HSYAV----------HTDSVWALASTPTFSHVYSGGR----- 321 (764)
Q Consensus 260 ~~V-~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~--~~l~~----------h~~~V~~l~~spd~~~l~sgs~----- 321 (764)
.++ ..+.+.+++..++..+..+.|.+.|+...... ..+.. .......++++|+++.++....
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 121 23567899988877788899999998654321 11110 1112223789999988876542
Q ss_pred -----CCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc---eEEEe-CCCcEEEeeCCCCCCceee
Q 046871 322 -----DLSLYLTDLATRESLLLCTGEHPILQLALHDDN---IWVAT-TDSSVHRWPAEGRNPQKVF 378 (764)
Q Consensus 322 -----Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~---l~~~s-~dg~I~iwd~~~~~~~~~~ 378 (764)
++.|.+.|..+.+.+..+........+.|+||+ ++++. .++.|.++|+.+.+.++.+
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999999999988877778999999997 66666 4899999999999988776
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.20 E-value=3.9e-09 Score=109.95 Aligned_cols=230 Identities=12% Similarity=0.090 Sum_probs=155.7
Q ss_pred ceeecccccceeEEEEeCCC--eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEE
Q 046871 77 SATFESHVDWVNDAVLVGDN--TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIW 154 (764)
Q Consensus 77 ~~~l~~h~~~V~~v~~s~d~--~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iw 154 (764)
+..+..+..+.....|++++ .+++...++.|..|+. ++. ...+..+...+..+++. ++++++++...++.|.+|
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~--~g~-~~~~~~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE--DGT-VDVLLDATAFTNGNAVD-AQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET--TSC-EEEEEESCSCEEEEEEC-TTSCEEEEETTTTEEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC--CCC-EEEEeCCCCccceeeEC-CCCCEEEEECCCCEEEEE
Confidence 45555566778889999986 4667777899999986 333 34555566788999999 678877666666789999
Q ss_pred eCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC-CCCcEEEEEEcCCCCEEE
Q 046871 155 DIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG-HKESVYALAMNDSGNLLV 233 (764)
Q Consensus 155 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~V~~l~~sp~g~~l~ 233 (764)
+.... ... . .....+ ....+..++++++|++.+
T Consensus 113 ~~~g~-~~~-------------------------------------~--------~~~~~~~~~~~~~~i~~d~dG~l~~ 146 (305)
T 3dr2_A 113 DADGQ-AHL-------------------------------------L--------VGRYAGKRLNSPNDLIVARDGAIWF 146 (305)
T ss_dssp CTTSC-EEE-------------------------------------E--------ECEETTEECSCCCCEEECTTSCEEE
T ss_pred CCCCC-EEE-------------------------------------E--------EeccCCCccCCCCCEEECCCCCEEE
Confidence 87521 000 0 000000 123456789999999887
Q ss_pred E----EeC-------------CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCC
Q 046871 234 S----GGT-------------EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD------SMIRLWDLGQ 290 (764)
Q Consensus 234 s----gs~-------------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D------g~I~iwdl~~ 290 (764)
+ |.. .+.|..||..+++..... .......++|+||++.|+.+... +.|++|++..
T Consensus 147 td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 147 TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred eCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 6 332 356888888777654433 34567889999999988877665 7899999876
Q ss_pred CeeeEE---E-eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCC
Q 046871 291 QRCIHS---Y-AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDS 362 (764)
Q Consensus 291 ~~~~~~---l-~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg 362 (764)
+. +.. + ....+....++++++|++ +.++.+ .|.+|+. .++.+..+.....+.+++|.+++ |++++.++
T Consensus 225 ~~-l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 225 GA-LHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp TE-EEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred CC-ccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 54 221 1 112334567899999984 444444 4999998 46666666655578899999887 77777654
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=3.9e-13 Score=144.48 Aligned_cols=255 Identities=15% Similarity=0.084 Sum_probs=145.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCCCcEEEecCCCCCeeeeeccccCC-c
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD-Y 128 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~-~ 128 (764)
++..+++++.||.|+.||..+ ++.+.++.. +.+.+..+..++ .+++++.|+.|+.||. .+++.+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t--G~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~-~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT--GSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGS-KNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT--CCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCC--CCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEEC-CCCceeeeeeccCccc
Confidence 578999999999999999998 556666655 455555555566 6777789999999996 44555444433211 1
Q ss_pred eE-EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 129 VT-CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 129 V~-~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
+. ...+. .+..+++++.++.|+.||..++...-.
T Consensus 83 ~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~------------------------------------------- 117 (369)
T 2hz6_A 83 VQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQT------------------------------------------- 117 (369)
T ss_dssp HTTCSCC-------CCCCEEEEEEEEECCC--------------------------------------------------
T ss_pred cccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEE-------------------------------------------
Confidence 10 00111 355778888899999999987643211
Q ss_pred ccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC---CEEEEEeCCCcEE
Q 046871 208 YVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG---RYCLSGSSDSMIR 284 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~sgs~Dg~I~ 284 (764)
...+. ...++|++..+++++.++.|+.||.++|+.+..+..+. ....+++.+. ..+++++.||.|+
T Consensus 118 -----~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~ 186 (369)
T 2hz6_A 118 -----LSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVV 186 (369)
T ss_dssp ------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred -----ecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEE
Confidence 11111 12334577889999999999999999999877765321 2233344432 5677888999999
Q ss_pred EEeCCCCeeeEEEeeecCceEE-EEEcCCCCEE----EEecCCCcEEEEeCCCCe----EEEEeecCCCeEEEEeeCCc-
Q 046871 285 LWDLGQQRCIHSYAVHTDSVWA-LASTPTFSHV----YSGGRDLSLYLTDLATRE----SLLLCTGEHPILQLALHDDN- 354 (764)
Q Consensus 285 iwdl~~~~~~~~l~~h~~~V~~-l~~spd~~~l----~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~~l~~spd~- 354 (764)
.||..+++.+..+.. ..++.. ..+++++... +.+ ++.++.+|..+|+ .+..+.....+..... .++
T Consensus 187 a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~~~~~sp~~-~~g~ 262 (369)
T 2hz6_A 187 TVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFPKETEAKSK-LTPT 262 (369)
T ss_dssp EECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHHH-SEEE
T ss_pred EEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccCcccccccc-ccce
Confidence 999999999888763 344433 3445565432 112 3445666665555 3333332222211111 233
Q ss_pred eEEEeCCCcEEEeeCC
Q 046871 355 IWVATTDSSVHRWPAE 370 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~ 370 (764)
+++++.+|.++.++..
T Consensus 263 lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 263 LYVGKYSTSLYASPSM 278 (369)
T ss_dssp ECBEECSSCEECCEEE
T ss_pred EEEecccCCEEecCcc
Confidence 8899999999988875
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=4.6e-09 Score=109.34 Aligned_cols=231 Identities=10% Similarity=0.079 Sum_probs=153.0
Q ss_pred eeeeccccCCceEEEEEecCCCc-EEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 118 CIRTLRQHSDYVTCLAAAEKNSN-IVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 118 ~~~~l~~h~~~V~~l~~~p~~~~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
.+..+..........+|+ ++++ ++++...++.|..|+....
T Consensus 36 ~~~~l~~~~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~~g~------------------------------------- 77 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWW-EAQRTLVWSDLVGRRVLGWREDGT------------------------------------- 77 (305)
T ss_dssp CCEEEECCCSSEEEEEEE-GGGTEEEEEETTTTEEEEEETTSC-------------------------------------
T ss_pred ceEEEecCCcCccCCeEe-CCCCEEEEEECCCCEEEEEeCCCC-------------------------------------
Confidence 344444455667889999 4555 7778888899999987421
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec---cC-CcCeEEEEEcCCCC
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR---GH-TDNIRSLLLDSTGR 272 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~---~h-~~~V~~l~~spdg~ 272 (764)
...+..+...+.+++++++|+++++...++.|.+||.. ++...... +. ...+..++++++|+
T Consensus 78 -------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~ 143 (305)
T 3dr2_A 78 -------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA 143 (305)
T ss_dssp -------------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC
T ss_pred -------------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC
Confidence 01122234568899999999977776667899999986 55322221 11 13467899999999
Q ss_pred EEEE----EeC-------------CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCC------CcEEEEe
Q 046871 273 YCLS----GSS-------------DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRD------LSLYLTD 329 (764)
Q Consensus 273 ~l~s----gs~-------------Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~D------g~I~iwd 329 (764)
+.++ |.. .+.|..||..+++..... .......++|+|+++.|+.+... +.|++|+
T Consensus 144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~ 221 (305)
T 3dr2_A 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA 221 (305)
T ss_dssp EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEE
T ss_pred EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEE
Confidence 8886 432 256888887666654433 44567889999999988877665 7899999
Q ss_pred CCCCeEE--EEee--cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCc
Q 046871 330 LATRESL--LLCT--GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV 404 (764)
Q Consensus 330 ~~~~~~~--~~~~--~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 404 (764)
+..+... ..+. .......+++++++ +++++.+ .|.+|+.+ ++....+..+
T Consensus 222 ~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~-g~~~~~~~~~----------------------- 276 (305)
T 3dr2_A 222 WRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSD-GQLLGHIPTP----------------------- 276 (305)
T ss_dssp EETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTT-SCEEEEEECS-----------------------
T ss_pred ecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCC-CCEEEEEECC-----------------------
Confidence 8765411 1111 13345678899999 8888855 49999874 3333332211
Q ss_pred ccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCc
Q 046871 405 SSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGS 441 (764)
Q Consensus 405 ~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~ 441 (764)
..+..++|.+|++.|..++.++.
T Consensus 277 --------------~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 277 --------------GTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp --------------SCCCEEEECTTSCEEEEEETTEE
T ss_pred --------------CceeEEEEeCCCCEEEEEcCCeE
Confidence 12456788889888877776643
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.2e-09 Score=115.92 Aligned_cols=254 Identities=11% Similarity=0.057 Sum_probs=160.3
Q ss_pred CCeeEEEeecccccCCCcEEEEEe--CCCcEEEEeCCCCCCccceee-------cccccceeEEEEeCCCeEEEEeC---
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGS--RDGTLKRWSLADDVGSCSATF-------ESHVDWVNDAVLVGDNTLVSCSS--- 103 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs--~Dg~I~iWd~~~~~~~~~~~l-------~~h~~~V~~v~~s~d~~l~s~s~--- 103 (764)
.....+++ +++|+++++.. .++.++||.+.+ ++ +..+ ..|-..+..+++.+++.|..+..
T Consensus 17 ~~p~~va~-----~~~g~~~v~~~~~~~~~~~l~~~~~--g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITL-----TPDGRLFLSLHQFYQPEMQVAELTQ--DG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEE-----CTTSCEEEEECGGGCCSCSEEEEET--TE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred CCcceEEE-----CCCCCEEEEeCCCCCCceEEEEECC--CC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence 57889998 78999988864 235466676653 32 2222 23556899999999986666553
Q ss_pred ---CCcEEEecCCCCCeeeeeccc------cCCceEEEEEecCCCcEEEEEe---CCCeEEEEeCCCCCCCCCCCCCCcC
Q 046871 104 ---DTTLKTWNCSSDGTCIRTLRQ------HSDYVTCLAAAEKNSNIVASGG---LGAEVFIWDIEAALAPSKSGDAMED 171 (764)
Q Consensus 104 ---Dg~V~vWd~~~~~~~~~~l~~------h~~~V~~l~~~p~~~~~lasg~---~dg~I~iwdl~~~~~~~~~~~~~~~ 171 (764)
+..|.+||+ .+++.+..+.. +...+..+++.+.++..+++.. .++.|.+||+.++....
T Consensus 89 ~~~~~~i~~~d~-~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r-------- 159 (343)
T 2qe8_A 89 SKSVPKLVAWDT-LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR-------- 159 (343)
T ss_dssp HTSCCEEEEEET-TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE--------
T ss_pred cCCCCeEEEEEC-CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE--------
Confidence 478999997 44665554432 2245688999954455556655 67899999997642110
Q ss_pred CcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 046871 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESV-YALAMNDSGNLLVSGGTEKVVRVWDPRTGS 250 (764)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V-~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~ 250 (764)
.+.+|.... ....+..+|..+.+.+.++.++.|.
T Consensus 160 ----------------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----- 194 (343)
T 2qe8_A 160 ----------------------------------------VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----- 194 (343)
T ss_dssp ----------------------------------------ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----
T ss_pred ----------------------------------------EecCCCcccccccceeECCEEEEeccCCCceecee-----
Confidence 011110000 0012233566666667777765553
Q ss_pred eeEEeccCCcCeEEEEEcCCCCEEEEEeCCC-cEEEEeCC---CCe-----eeE--EEeeecCceEEEEEcCCCCEEEEe
Q 046871 251 KTIKLRGHTDNIRSLLLDSTGRYCLSGSSDS-MIRLWDLG---QQR-----CIH--SYAVHTDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 251 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg-~I~iwdl~---~~~-----~~~--~l~~h~~~V~~l~~spd~~~l~sg 319 (764)
..+..|+|+|||++|+.+..++ .|..++.. .+. ... ...++.+....++++++|.++++.
T Consensus 195 ---------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 195 ---------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp ---------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEE
T ss_pred ---------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEc
Confidence 2367899999999988887766 44444421 110 000 122344556789999999999998
Q ss_pred cCCCcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc-eEEEeC
Q 046871 320 GRDLSLYLTDLATRESLLLCTG--EHPILQLALHDDN-IWVATT 360 (764)
Q Consensus 320 s~Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~-l~~~s~ 360 (764)
..++.|.+||..+++....... ...+.++++.+++ +++.+.
T Consensus 266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 8899999999966664444332 3457899999888 555544
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=2.2e-08 Score=107.56 Aligned_cols=268 Identities=11% Similarity=0.134 Sum_probs=170.7
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeecccc---------CCceE-EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQH---------SDYVT-CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h---------~~~V~-~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~ 164 (764)
++.++.++.++.|..+|. .+++.+-..... ...+. .+.. ++..++.++.++.|..+|..++...-.
T Consensus 53 ~~~v~~~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNA-DDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEc-cCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 567888888999999996 445554333321 12232 2333 356777888899999999987532210
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVW 244 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iw 244 (764)
...... ....+ ... +..+++++.++.|..+
T Consensus 129 --------------------------------------~~~~~~------~~~~p----~~~--~~~v~v~~~~g~l~~~ 158 (376)
T 3q7m_A 129 --------------------------------------TKVAGE------ALSRP----VVS--DGLVLIHTSNGQLQAL 158 (376)
T ss_dssp --------------------------------------EECSSC------CCSCC----EEE--TTEEEEECTTSEEEEE
T ss_pred --------------------------------------EeCCCc------eEcCC----EEE--CCEEEEEcCCCeEEEE
Confidence 000000 00111 111 4578888899999999
Q ss_pred eCCCCceeEEeccCCcCe-----EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc----eE---EEEEcC-
Q 046871 245 DPRTGSKTIKLRGHTDNI-----RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS----VW---ALASTP- 311 (764)
Q Consensus 245 d~~~~~~~~~l~~h~~~V-----~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~----V~---~l~~sp- 311 (764)
|..+|+.+.......... ...... +..++.++.++.|..+|..+++.+......... +. .+...|
T Consensus 159 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~ 236 (376)
T 3q7m_A 159 NEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV 236 (376)
T ss_dssp ETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE
T ss_pred ECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE
Confidence 999999888776432211 222222 457888888999999999999988776532110 00 011111
Q ss_pred -CCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceecccc
Q 046871 312 -TFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLS 390 (764)
Q Consensus 312 -d~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
.+..++.++.++.+..+|..+++.+..... .....+....+.+++++.++.|..+|..+++..-.......
T Consensus 237 ~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~------- 308 (376)
T 3q7m_A 237 VVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH------- 308 (376)
T ss_dssp EETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-------
T ss_pred EECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-------
Confidence 246788888899999999999998766553 33556666655599999999999999998875433220000
Q ss_pred ccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 391 FSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 391 ~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
..+....+ .+..|+.++.+|.|.++|..+|+.+..+
T Consensus 309 ----------------------------~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 309 ----------------------------RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ----------------------------SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ----------------------------CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 00000111 2357788888999999999999998766
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=1.9e-08 Score=105.79 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=144.0
Q ss_pred eeEEEeecccccCC-CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCC
Q 046871 38 INCLAVLKSSVSNG-VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 38 V~~l~~~~~~~S~d-~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~ 116 (764)
..+.+| +++ +.++++...++.|..||..++. ...+. +...+.++++.+++.++.++.++ |.+||.. ++
T Consensus 51 ~egp~~-----~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~-~g 119 (326)
T 2ghs_A 51 GEGPTF-----DPASGTAWWFNILERELHELHLASGR---KTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTA-TG 119 (326)
T ss_dssp EEEEEE-----ETTTTEEEEEEGGGTEEEEEETTTTE---EEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETT-TC
T ss_pred CcCCeE-----eCCCCEEEEEECCCCEEEEEECCCCc---EEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECC-CC
Confidence 456677 576 4566666678999999998732 22222 34579999999998666666554 9999963 34
Q ss_pred eeeeecc----ccCCceEEEEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 117 TCIRTLR----QHSDYVTCLAAAEKNSNIVASGGL------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 117 ~~~~~l~----~h~~~V~~l~~~p~~~~~lasg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+...... .....+.+++++ ++++++++... .+.|..++ ++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-------------------------- 170 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA--KGK-------------------------- 170 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE--TTE--------------------------
T ss_pred cEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe--CCc--------------------------
Confidence 3322111 112468899999 66776665432 13444444 210
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CC-ce-----eEEecc
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTEKVVRVWDPR--TG-SK-----TIKLRG 257 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~--~~-~~-----~~~l~~ 257 (764)
. ..+.........++|+|+++.++.+ +.++.|.+||+. ++ +. ...+..
T Consensus 171 ----------------------~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~ 227 (326)
T 2ghs_A 171 ----------------------V-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG 227 (326)
T ss_dssp ----------------------E-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred ----------------------E-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC
Confidence 0 0011112345789999999876554 557899999986 55 32 223333
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEc-CCCCEEEEec
Q 046871 258 HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALAST-PTFSHVYSGG 320 (764)
Q Consensus 258 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~s-pd~~~l~sgs 320 (764)
.......++++++|++.++...++.|.+||. +++.+..+..+...+++++|+ ++++.|+.++
T Consensus 228 ~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 228 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 4456788999999988777767789999998 677778887777789999998 8887776444
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.10 E-value=4.1e-09 Score=123.00 Aligned_cols=241 Identities=11% Similarity=0.095 Sum_probs=153.4
Q ss_pred ccccceeEEEEeCCC-eEE-EEeC----CCcEEEecCCCCCeeeee-ccccCCceEEEEEecCCCcEEEEEeCCC-----
Q 046871 82 SHVDWVNDAVLVGDN-TLV-SCSS----DTTLKTWNCSSDGTCIRT-LRQHSDYVTCLAAAEKNSNIVASGGLGA----- 149 (764)
Q Consensus 82 ~h~~~V~~v~~s~d~-~l~-s~s~----Dg~V~vWd~~~~~~~~~~-l~~h~~~V~~l~~~p~~~~~lasg~~dg----- 149 (764)
+|...+..++|+||+ +|+ +.+. +.+|++||+.. ++.+.. +.. .....++|+ |++.|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~--~k~~~~~Ws--Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLKD--VKFSGISWL--GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEEE--EESCCCEEE--TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCccccCC--ceeccEEEe--CCCEEEEEEecCccccc
Confidence 355678889999998 454 2222 25799999844 544332 211 112467888 566666666553
Q ss_pred --------eEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccC-CCCcE
Q 046871 150 --------EVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKG-HKESV 220 (764)
Q Consensus 150 --------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~V 220 (764)
.|++|++.+.... ...+..... +...+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~--------------------------------------------~~~v~~~~~~~~~~~ 236 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQED--------------------------------------------DRLVFGAIPAQHHRY 236 (693)
T ss_dssp ----CCCCEEEEEETTSCGGG--------------------------------------------CEEEESCSGGGCCSE
T ss_pred ccccCCCcEEEEEECCCCccc--------------------------------------------ceEEEecCCCCCeEE
Confidence 4888887653110 011111222 34457
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc-eeEEeccCCcCeEEEEEcCCCCEEEEEe-CC---CcEEEEeCCCC
Q 046871 221 YALAMNDSGNLLVSGGT----EKVVRVWDPRTGS-KTIKLRGHTDNIRSLLLDSTGRYCLSGS-SD---SMIRLWDLGQQ 291 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~----dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~sgs-~D---g~I~iwdl~~~ 291 (764)
.++.++|||++|+.... ...|+++|+.++. ....+..+.+..... ++++|..|+..+ .+ +.|..+|+.++
T Consensus 237 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 78999999998865432 3589999998764 455666666666655 667776655444 33 57999999876
Q ss_pred ee--eEEEeeecCceEEEEEcCCCCEEEEecC-CC--cEEEEeCCCCeEEEE-eecCCCeEEEEeeCCc--eEEEeCC--
Q 046871 292 RC--IHSYAVHTDSVWALASTPTFSHVYSGGR-DL--SLYLTDLATRESLLL-CTGEHPILQLALHDDN--IWVATTD-- 361 (764)
Q Consensus 292 ~~--~~~l~~h~~~V~~l~~spd~~~l~sgs~-Dg--~I~iwd~~~~~~~~~-~~~~~~V~~l~~spd~--l~~~s~d-- 361 (764)
.. ...+..|...+. .|++++++|+.... ++ .|++|++.++....+ +.....+..+.+++++ ++....+
T Consensus 316 ~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~ 393 (693)
T 3iuj_A 316 GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYA 393 (693)
T ss_dssp CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSS
T ss_pred CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCC
Confidence 54 456666776665 88899988876654 43 689999986543332 2234456777788777 5544443
Q ss_pred --CcEEEeeCCCCCC
Q 046871 362 --SSVHRWPAEGRNP 374 (764)
Q Consensus 362 --g~I~iwd~~~~~~ 374 (764)
+.|..||+.+++.
T Consensus 394 tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 394 QPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCCEEEEECTTTCCE
T ss_pred CCCEEEEEECCCCeE
Confidence 7899999987653
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.1e-08 Score=118.65 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=122.7
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCC----------ce-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD----------YV-TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~----------~V-~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
++.++.++.++.|..+|. .+++.+-.+..+.. .+ ..+++. +..++.++.|+.|..+|..+++..-
T Consensus 70 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDA-RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEEC-CCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEee
Confidence 567888888899999996 45665544432221 00 122333 5678888999999999998864331
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe------C
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG------T 237 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs------~ 237 (764)
...... ... ........++ +. ++ .+++++ .
T Consensus 146 ~~~~~~-------------------------------------~~~-~~~~~~~sP~----v~-~g-~v~vg~~~~~~~~ 181 (689)
T 1yiq_A 146 SVDTRA-------------------------------------DHK-RSYTITGAPR----VV-NG-KVVIGNGGAEFGV 181 (689)
T ss_dssp EEECCS-------------------------------------CTT-SCCBCCSCCE----EE-TT-EEEECCBCTTTCC
T ss_pred eecCcC-------------------------------------CCC-CCccccCCcE----EE-CC-EEEEEeCCCccCC
Confidence 100000 000 0000001111 11 23 444443 3
Q ss_pred CCeEEEEeCCCCceeEEeccCC-------------------------------cCeEEEEEcCCCCEEEEEeCCCc----
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHT-------------------------------DNIRSLLLDSTGRYCLSGSSDSM---- 282 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~-------------------------------~~V~~l~~spdg~~l~sgs~Dg~---- 282 (764)
++.|+.||.++|+.+.++.... .....++++|++.+++.++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 6899999999999988765210 01125788998999999988764
Q ss_pred ---------------EEEEeCCCCeeeEEEee--ec-------CceEEEEEcCCCC---EEEEecCCCcEEEEeCCCCeE
Q 046871 283 ---------------IRLWDLGQQRCIHSYAV--HT-------DSVWALASTPTFS---HVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 283 ---------------I~iwdl~~~~~~~~l~~--h~-------~~V~~l~~spd~~---~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
|..||..+|+.+..++. |. ..+.......+|+ .++.++.+|.++++|..+|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999999988764 21 1122222223554 788999999999999999998
Q ss_pred EEE
Q 046871 336 LLL 338 (764)
Q Consensus 336 ~~~ 338 (764)
+..
T Consensus 342 l~~ 344 (689)
T 1yiq_A 342 LSA 344 (689)
T ss_dssp EEE
T ss_pred ecc
Confidence 743
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=1.3e-08 Score=117.79 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=125.9
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCC-----------ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD-----------YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~-----------~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
++.++.++.++.|..+|. .+++.+-.+..... ....+++. +..++.++.|+.|..+|..+++..-
T Consensus 77 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCccccccccccCCCCCceEE---CCEEEEEcCCCEEEEEECCCCCEEe
Confidence 567778888888999996 45666544432211 01223343 5678888999999999998864331
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC------
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT------ 237 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~------ 237 (764)
...... ... ........++ + .+..+++++.
T Consensus 153 ~~~~~~-------------------------------------~~~-~~~~~~~~p~----v--~~~~v~v~~~~~~~~~ 188 (677)
T 1kb0_A 153 HQNTFE-------------------------------------GQK-GSLTITGAPR----V--FKGKVIIGNGGAEYGV 188 (677)
T ss_dssp EEETTT-------------------------------------TCC-SSCBCCSCCE----E--ETTEEEECCBCTTTCC
T ss_pred eecCCc-------------------------------------CcC-cCcccccCcE----E--ECCEEEEEecccccCC
Confidence 110000 000 0000000111 1 1344555543
Q ss_pred CCeEEEEeCCCCceeEEeccCCcC--------------------------------eEEEEEcCCCCEEEEEeCCC----
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHTDN--------------------------------IRSLLLDSTGRYCLSGSSDS---- 281 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~~~--------------------------------V~~l~~spdg~~l~sgs~Dg---- 281 (764)
++.|+.||..+|+.+.++...... ...+++++++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999998877532211 13578899999999887764
Q ss_pred ---------------cEEEEeCCCCeeeEEEee--ec-------CceEEEEEcCCC---CEEEEecCCCcEEEEeCCCCe
Q 046871 282 ---------------MIRLWDLGQQRCIHSYAV--HT-------DSVWALASTPTF---SHVYSGGRDLSLYLTDLATRE 334 (764)
Q Consensus 282 ---------------~I~iwdl~~~~~~~~l~~--h~-------~~V~~l~~spd~---~~l~sgs~Dg~I~iwd~~~~~ 334 (764)
.|..+|..+|+.+..++. |. ....-+....+| ..++.++.+|.|+++|..+|+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 599999999999888764 21 112223333467 689999999999999999999
Q ss_pred EEEEee
Q 046871 335 SLLLCT 340 (764)
Q Consensus 335 ~~~~~~ 340 (764)
.+....
T Consensus 349 ~l~~~~ 354 (677)
T 1kb0_A 349 FISAKN 354 (677)
T ss_dssp EEEEEE
T ss_pred Eecccc
Confidence 886654
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.07 E-value=1.6e-07 Score=98.68 Aligned_cols=222 Identities=10% Similarity=-0.029 Sum_probs=143.3
Q ss_pred eeEEEEeCC-C-eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCC
Q 046871 87 VNDAVLVGD-N-TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 87 V~~v~~s~d-~-~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~ 164 (764)
.....|+++ + .+++...++.|..||.. +++. ..+. ....+.++++. ++++++++. .+ .|.+||..++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~-~~~~-~~~~-~~~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLA-SGRK-TVHA-LPFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETT-TTEE-EEEE-CSSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECC-CCcE-EEEE-CCCcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 456789987 4 55666678899999973 3432 2222 34679999999 567766654 44 499999876421000
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC------C
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT------E 238 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~------d 238 (764)
... ........+..++++|+|+++++... .
T Consensus 125 -------------------------------------~~~-------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 125 -------------------------------------AEL-------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA 160 (326)
T ss_dssp -------------------------------------ECS-------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred -------------------------------------eeC-------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCc
Confidence 000 00011245789999999997665432 2
Q ss_pred CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-ee-----eEEEeeecCceEEEEE
Q 046871 239 KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG-SSDSMIRLWDLG--QQ-RC-----IHSYAVHTDSVWALAS 309 (764)
Q Consensus 239 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwdl~--~~-~~-----~~~l~~h~~~V~~l~~ 309 (764)
+.|..+| +++.. .+..+......++|+||++.++.+ +.++.|.+||+. ++ .. ...+......+..+++
T Consensus 161 ~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~ 237 (326)
T 2ghs_A 161 GSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC 237 (326)
T ss_dssp EEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred eEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEE
Confidence 4566666 45433 333333457889999999877554 557899999985 55 31 2222223455788999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-CCCeEEEEee-CCc--eEEEeCCC
Q 046871 310 TPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-EHPILQLALH-DDN--IWVATTDS 362 (764)
Q Consensus 310 spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~s-pd~--l~~~s~dg 362 (764)
+++|.+.++...++.|.+||. +++.+..+.. ...+++++|+ +++ |++++..+
T Consensus 238 d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 238 DAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 999987777766788999998 5666555554 3468999998 775 66665543
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=1.6e-08 Score=107.32 Aligned_cols=268 Identities=10% Similarity=-0.027 Sum_probs=165.0
Q ss_pred cEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEe----------CCCcEEEecCCCCCeeeeecccc------
Q 046871 63 TLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCS----------SDTTLKTWNCSSDGTCIRTLRQH------ 125 (764)
Q Consensus 63 ~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s----------~Dg~V~vWd~~~~~~~~~~l~~h------ 125 (764)
.|.+.|..+ .+.+.++.....+ .+.++||+ +++.+. .+++|.+||+ .+.+.+.++...
T Consensus 47 ~vsvID~~t--~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~-~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGC--GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTT--TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCC--CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC-CCCCEEEEEECCCccccc
Confidence 788999988 6777887765555 79999997 565554 3688999997 557777776533
Q ss_pred -CCceEEEEEecCCCcEEEEEeC--CCeEEE--EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccc
Q 046871 126 -SDYVTCLAAAEKNSNIVASGGL--GAEVFI--WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISA 200 (764)
Q Consensus 126 -~~~V~~l~~~p~~~~~lasg~~--dg~I~i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 200 (764)
......++++ +++++++++.. +..|.+ +|+.+.... ... .+ ..+...+. ........++.+..
T Consensus 122 ~g~~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~tv~~i-~v~-----~~-~~~~p~g~----~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 122 VGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSA-----SC-FHIHPGAA----ATHYLGSCPASLAA 189 (368)
T ss_dssp BSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECS-----SC-CCCEEEET----TEEECCCCTTSCEE
T ss_pred cCCCcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhhceEE-ECC-----Cc-eEEccCCC----eEEEEEcCCCCEEE
Confidence 1235678999 77888887764 467888 888661000 000 00 00000000 00011112222222
Q ss_pred cccCC----CCccce----eccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEecc----------CCc
Q 046871 201 HTSQS----QGYVPI----AAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS--KTIKLRG----------HTD 260 (764)
Q Consensus 201 ~~~~~----~~~~~~----~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~--~~~~l~~----------h~~ 260 (764)
.+... .+.... ...-...+. + .+++..++..+. +.|.+.|..... .+..+.- ...
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 22221 011100 011112233 3 555666666666 899999986543 2222211 011
Q ss_pred CeEEEEEcCCCCEEEEEeC-C--------CcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCE-EEEec-CCCcEEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSS-D--------SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSH-VYSGG-RDLSLYLTD 329 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~-D--------g~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~-l~sgs-~Dg~I~iwd 329 (764)
....++++||+++++++.. + +.+.++|+.+++.+.++.... ..+.|+|+||+++ +++.. .++.|.++|
T Consensus 265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2223789999998887643 2 356699999999998887554 5889999999984 55666 599999999
Q ss_pred CCCCeEEEEeecCCCeEEEEeeCC
Q 046871 330 LATRESLLLCTGEHPILQLALHDD 353 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~V~~l~~spd 353 (764)
+.+++.+..+........+++.+.
T Consensus 344 ~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 344 AASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp SSSCEEEEECCCCSCCCEEECCCC
T ss_pred CCCCcEEEEEECCCCCCEEEeecC
Confidence 999999998887777777777653
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=7.2e-11 Score=126.68 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCc-eE-
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDS-VW- 305 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~-V~- 305 (764)
++..+++++.|+.|+.||..+|+.+.++.. +.+.+..+..++..+++++.|+.|+.||..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 477899999999999999999999998876 55555556677878888889999999999999887776544221 10
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCc--eEEEeCCCcEEEeeCCCCCCceeeecCCc
Q 046871 306 ALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDN--IWVATTDSSVHRWPAEGRNPQKVFQRGGS 383 (764)
Q Consensus 306 ~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 383 (764)
+..+. ++..+++++.|+.|+.||..+|+.+..+..... ..++|++ +++++.++.|+.||..+++..-.+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 01111 345788888999999999999998876654432 2344444 8889999999999999988765543210
Q ss_pred ceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 384 FIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 384 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.....+. + . ...+ ..+++++.||.|+.||..+|+.+-.+
T Consensus 161 --~~~~~~~-------~-----------------~-------~~~~-~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 161 --YAASLPE-------D-----------------D-------VDYK-MSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp --ECCBCCC-------C-----------------C-------TTCC-CCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred --ccCcccc-------C-----------------C-------cccc-ceEEEECCCCEEEEEECCCCcEEEEe
Confidence 0000000 0 0 0012 34666788999999999999988665
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=1.5e-08 Score=106.32 Aligned_cols=263 Identities=13% Similarity=0.104 Sum_probs=167.4
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~ 116 (764)
.+.++.+ .+++ .|+.++.+ |..+|. + ++....+..+........+. ++.+..++.++.|..+|.. +
T Consensus 61 ~~~~~~~-----~~~g-~l~v~t~~--l~~~d~-~--g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~--g 126 (330)
T 3hxj_A 61 IECRPSI-----GKDG-TIYFGSDK--VYAINP-D--GTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD--G 126 (330)
T ss_dssp EEECCEE-----TTTT-EECCSSCE--EEEECC-C--GGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT--S
T ss_pred cccceEE-----ecCC-cEEEecCc--EEEECC-C--CcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC--C
Confidence 3455555 3454 45555554 888885 3 33344443333333334444 6788888889999999963 5
Q ss_pred eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
+.......+...+.++... .++. +..++.++.|..+|.. +...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~g~-l~vgt~~~~l~~~d~~-g~~~---------------------------------- 169 (330)
T 3hxj_A 127 TEKWRFKTKKAIYATPIVS-EDGT-IYVGSNDNYLYAINPD-GTEK---------------------------------- 169 (330)
T ss_dssp CEEEEEECSSCCCSCCEEC-TTSC-EEEECTTSEEEEECTT-SCEE----------------------------------
T ss_pred CEEEEEcCCCceeeeeEEc-CCCE-EEEEcCCCEEEEECCC-CCEe----------------------------------
Confidence 5554444444445555555 4444 5667778889999986 3211
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEE
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 276 (764)
.........+.++.+.+++.+. .++ +.|..+| .+++....+......+.++...++|. |..
T Consensus 170 --------------~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v 230 (330)
T 3hxj_A 170 --------------WRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV 230 (330)
T ss_dssp --------------EEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred --------------EEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence 0011112234455666677644 444 7899999 78888877776667788899988875 555
Q ss_pred EeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-CCCeEEEEeeCCc-
Q 046871 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-EHPILQLALHDDN- 354 (764)
Q Consensus 277 gs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~V~~l~~spd~- 354 (764)
++.++.|..+|. +++.+..+......+.++.+.+++ .|+.++.+|.|..+|. +++.+..+.. ...+.++...+++
T Consensus 231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence 667888888884 666666666544445556666555 5677788889999996 6766655553 4456777787777
Q ss_pred eEEEeCCCcEEEeeCCCC
Q 046871 355 IWVATTDSSVHRWPAEGR 372 (764)
Q Consensus 355 l~~~s~dg~I~iwd~~~~ 372 (764)
+++++.+|.+++...+..
T Consensus 308 l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 308 IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEECTTSCEEEEEC---
T ss_pred EEEEcCCCeEEEEecccc
Confidence 999999999999876643
No 233
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.01 E-value=3.3e-06 Score=100.11 Aligned_cols=364 Identities=11% Similarity=0.056 Sum_probs=206.7
Q ss_pred eeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe
Q 046871 38 INCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT 117 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~ 117 (764)
|.++.. ++++. |..|+.++.|..|+..++...... ...+...|.++...+++.|..++.++-+.+||. ..+.
T Consensus 175 i~~i~~-----d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~-~~~~ 246 (795)
T 4a2l_A 175 IASTLY-----RQGDQ-IYIGTSTDGLYTYSITQKTFEKVI-PILGTKQIQAILQQSPTRIWVATEGAGLFLINP-KTKE 246 (795)
T ss_dssp CEEEEE-----EETTE-EEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEEEBSSCEEEEET-TTTE
T ss_pred eEEEEE-----CCCCC-EEEEECCCCEEEEeCCCCeEEEec-CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeC-CCCe
Confidence 778777 34554 445666556888998763321111 112345788888888887777776655888996 3333
Q ss_pred eeeeccc-------cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC-----CcCCcCccccCCCCCCc
Q 046871 118 CIRTLRQ-------HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA-----MEDDCSTGINGSGNSLP 185 (764)
Q Consensus 118 ~~~~l~~-------h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 185 (764)
....... ....|.++... .++.+. .|+.+| |.+||..+.......... ........+... .
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D----~ 319 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMD-SQNRLW-IGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD----S 319 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEEC-TTSCEE-EEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC----T
T ss_pred EEEeecCCCCccccCCCeEEEEEEc-CCCCEE-EEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe----C
Confidence 3222111 23568999887 555544 444554 888997654321110000 000000000000 0
Q ss_pred ccceeecCCCCcccccccCCCCccceec-----cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEecc---
Q 046871 186 VTSLRTIGSSNSISAHTSQSQGYVPIAA-----KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRG--- 257 (764)
Q Consensus 186 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~--- 257 (764)
...+-.....+.+..+............ .-....|.++...++|+ |..|+.++-|..||..+++.......
T Consensus 320 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 320 QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 0001111111222222221111100000 11245699999988887 55577777799999887654332211
Q ss_pred -----CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe----eecCceEEEEEcCCCCEEEEecCCCcEEEE
Q 046871 258 -----HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA----VHTDSVWALASTPTFSHVYSGGRDLSLYLT 328 (764)
Q Consensus 258 -----h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~----~h~~~V~~l~~spd~~~l~sgs~Dg~I~iw 328 (764)
....|.+++..++|+.|..|+.++-|.+||..+++...-.. .+...|.++...+++.+.+... +-+.+|
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~ 476 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRF 476 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEE
Confidence 23579999999999867778877789999998776433221 2345799999998887665543 458899
Q ss_pred eCCCCeEEEEeec-------CCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCC
Q 046871 329 DLATRESLLLCTG-------EHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEG 400 (764)
Q Consensus 329 d~~~~~~~~~~~~-------~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 400 (764)
|..+++....... ...|.++...+++ +|+|+. +.|.+|+..++.. .+....
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~------------------ 535 (795)
T 4a2l_A 477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASIL------------------ 535 (795)
T ss_dssp ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCS------------------
T ss_pred eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCC------------------
Confidence 9887765443221 3568999999888 999998 6788898766432 111000
Q ss_pred CCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEe
Q 046871 401 STPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453 (764)
Q Consensus 401 ~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i 453 (764)
.. ..+ ....|.++...++|+..++.. . -|..||..+++..
T Consensus 536 --------~~--~~l-~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 536 --------PV--SNV-TKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp --------CS--CGG-GGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred --------CC--CCC-CCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 00 000 012356667777888655443 3 5888998877543
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=9.3e-08 Score=110.60 Aligned_cols=305 Identities=14% Similarity=0.104 Sum_probs=178.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeeccccc----------ce-eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeee
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVD----------WV-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIR 120 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~----------~V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~ 120 (764)
+..|+.++.++.|..+|..+ ++.+-++..... .+ ..+++ .+++++.++.|+.|..+|. .+++.+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~-~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAAS--GKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDA-KTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEET-TTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCC--ChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEEC-CCCCEee
Confidence 56788888889999999988 444544432211 01 11233 2467888899999999996 4566554
Q ss_pred eccccC----CceEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 121 TLRQHS----DYVTC-LAAAEKNSNIVASGGL------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 121 ~l~~h~----~~V~~-l~~~p~~~~~lasg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
.+.... ..+.+ ..+. +..++.+.. ++.|..+|..+++..-........ ... ......+
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~---~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~-------p~~-~~~~~~~ 210 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV---KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD-------PAL-PYEHPEL 210 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC-------TTS-CCSSHHH
T ss_pred eeccCCCCCcceecCCCEEE---CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC-------CCc-ccccccc
Confidence 433211 11111 1112 334444432 589999999887554221100000 000 0000000
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCc
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK-------------------VVRVWDPRTGS 250 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-------------------~I~iwd~~~~~ 250 (764)
.. ....+. +.......+.......+++.++..+++.++.++ .|..+|.++|+
T Consensus 211 ~~-----~~~~~~----g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~ 281 (668)
T 1kv9_A 211 RE-----AAKTWQ----GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK 281 (668)
T ss_dssp HH-----HHTTCC----SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred cc-----ccccCC----ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence 00 000000 000000011122223567888888888887766 39999999999
Q ss_pred eeEEecc--CC-------cCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCeeeEEEeeec-----------C-ce--
Q 046871 251 KTIKLRG--HT-------DNIRSLLLDSTGR---YCLSGSSDSMIRLWDLGQQRCIHSYAVHT-----------D-SV-- 304 (764)
Q Consensus 251 ~~~~l~~--h~-------~~V~~l~~spdg~---~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-----------~-~V-- 304 (764)
.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+....... . ++
T Consensus 282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~ 361 (668)
T 1kv9_A 282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA 361 (668)
T ss_dssp EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccc
Confidence 9888764 22 2233233334675 68899999999999999999885443211 0 00
Q ss_pred ----------------------EEEEEcCCCCEEEEe------------------------------------cCCCcEE
Q 046871 305 ----------------------WALASTPTFSHVYSG------------------------------------GRDLSLY 326 (764)
Q Consensus 305 ----------------------~~l~~spd~~~l~sg------------------------------------s~Dg~I~ 326 (764)
..++++|+...++.. ..+|.|.
T Consensus 362 ~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~ 441 (668)
T 1kv9_A 362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL 441 (668)
T ss_dssp TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred ccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEE
Confidence 126778877766641 1348899
Q ss_pred EEeCCCCeEEEEeecCCCeEEEEee-CCc-eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 327 LTDLATRESLLLCTGEHPILQLALH-DDN-IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 327 iwd~~~~~~~~~~~~~~~V~~l~~s-pd~-l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.||+.+++.+.......+.....+. .++ +++++.|+.++.||..+++.+..+..
T Consensus 442 A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 442 AWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 9999999998877765555433333 333 88899999999999999988777654
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=2.4e-06 Score=86.60 Aligned_cols=249 Identities=9% Similarity=0.006 Sum_probs=151.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccc---eeecccccceeEEEEeCC-CeEE-EEeCCCcEEEecCCCCCeeeeeccccCC
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCS---ATFESHVDWVNDAVLVGD-NTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSD 127 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~---~~l~~h~~~V~~v~~s~d-~~l~-s~s~Dg~V~vWd~~~~~~~~~~l~~h~~ 127 (764)
.+|+.+.. +.|+.++++....... ..+......+..+++.++ +.|+ +-..++.|.++++.. ......+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCC
Confidence 45555554 4788898876322111 112222345788999986 5554 445578899999733 222222222234
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 128 YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
....+++.+.++.++++-...+.|.+++++.....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--------------------------------------------- 114 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--------------------------------------------- 114 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------------------------
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE---------------------------------------------
Confidence 67899999444566666666788999998642100
Q ss_pred ccceeccCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEe-ccCCcCeEEEEEcCCCCEEEEEe-CCCc
Q 046871 208 YVPIAAKGHKESVYALAMNDSGNLLVSGGT---EKVVRVWDPRTGSKTIKL-RGHTDNIRSLLLDSTGRYCLSGS-SDSM 282 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~---dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~sgs-~Dg~ 282 (764)
............++++|++..|+.+.. .+.|..+++.. +....+ .........+++++++.+|+.+. ..+.
T Consensus 115 ---~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 115 ---VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp ---EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ---EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 000111134578999996666555543 36888888754 333322 22334678999999877765554 5678
Q ss_pred EEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCC--CeEEEEeeCCc
Q 046871 283 IRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEH--PILQLALHDDN 354 (764)
Q Consensus 283 I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--~V~~l~~spd~ 354 (764)
|.++|+........+. .......++.. .+..+++....+.|.++|..+++.+..+.... ....+++.|++
T Consensus 191 I~~~~~~g~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 191 AECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred EEEEecCCCceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 9999997544333333 22334567664 33444454556899999999998887776432 46677777765
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=2.5e-08 Score=105.80 Aligned_cols=267 Identities=8% Similarity=-0.057 Sum_probs=165.9
Q ss_pred eEEEEeCCC----cEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEe----------CCCeEEEEeCCCCCCC
Q 046871 97 TLVSCSSDT----TLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGG----------LGAEVFIWDIEAALAP 162 (764)
Q Consensus 97 ~l~s~s~Dg----~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~----------~dg~I~iwdl~~~~~~ 162 (764)
.+++...++ +|.+.|. .+.+.+.++.....+ .++++ ++++.++++. .++.|.+||+.+.+..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~-~t~~v~~~i~vG~~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFLS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEET-TTTEEEEEEEECTTC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred EEEECCccCCccceEEEEEC-CCCeEEEEEeCCCCC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 344444444 7889996 557888877655555 79999 6777777665 3688999999875322
Q ss_pred CCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC--CCe
Q 046871 163 SKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT--EKV 240 (764)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~--dg~ 240 (764)
.... + .... .... ......++++|||++++++.. +..
T Consensus 110 ~~I~---------------------------------v---~~~~---~~~~--g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 110 ADIE---------------------------------L---PDAP---RFSV--GPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEE---------------------------------E---TTSC---SCCB--SCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred EEEE---------------------------------C---CCcc---cccc--CCCcceEEEcCCCCEEEEEccCCCCe
Confidence 1100 0 0000 0000 122457899999999998864 467
Q ss_pred EEE--EeCCCCceeEEeccCCcCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC-----CeeeE----EEeeecCceEEEE
Q 046871 241 VRV--WDPRTGSKTIKLRGHTDNIRSLLLDSTGR-YCLSGSSDSMIRLWDLGQ-----QRCIH----SYAVHTDSVWALA 308 (764)
Q Consensus 241 I~i--wd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~Dg~I~iwdl~~-----~~~~~----~l~~h~~~V~~l~ 308 (764)
|.+ +|+.+ +..+... +. +.+.|+++ .+++.+.|+.+.+.|+.+ ++... .+.....+. +
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~ 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q 218 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence 888 99877 3444311 11 12334443 455667788888888876 43321 111122333 3
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCe--EEEEeec-----------CCCeEEEEeeCCc--eEEEeC---------CCcE
Q 046871 309 STPTFSHVYSGGRDLSLYLTDLATRE--SLLLCTG-----------EHPILQLALHDDN--IWVATT---------DSSV 364 (764)
Q Consensus 309 ~spd~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~-----------~~~V~~l~~spd~--l~~~s~---------dg~I 364 (764)
.+++..++..+. +.|.+.|+.+.. .+..+.. ......+++++++ ++++.. ++.+
T Consensus 219 -~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 219 -ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp -ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred -cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 556666666666 999999997543 2222211 1112236899998 776543 2356
Q ss_pred EEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc-EEEEee-CCCcE
Q 046871 365 HRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR-HVLTKD-AAGSV 442 (764)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~-~l~t~s-~dG~V 442 (764)
.++|+.+.+.+..+..+. ....++|++||+ .+++.. .+++|
T Consensus 297 ~ViD~~t~~vv~~i~vg~-------------------------------------~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 297 SSVTASVGQTSGPISNGH-------------------------------------DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EEEESSSCCEEECCEEEE-------------------------------------EECEEEECCSSSCEEEEEETTTTEE
T ss_pred EEEECCCCeEEEEEECCC-------------------------------------CcceEEECCCCCEEEEEccCCCCeE
Confidence 699999988776654221 234677888998 456666 59999
Q ss_pred EEEEccccEEeeecC
Q 046871 443 KLWEITRGVVVEDYG 457 (764)
Q Consensus 443 ~lWdi~tg~~i~~~~ 457 (764)
.++|+.+++.++++.
T Consensus 340 sVID~~t~kvv~~I~ 354 (368)
T 1mda_H 340 DIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEESSSCEEEEECC
T ss_pred EEEECCCCcEEEEEE
Confidence 999999999999883
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.92 E-value=1.2e-05 Score=95.11 Aligned_cols=363 Identities=9% Similarity=0.064 Sum_probs=206.6
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc--------cccceeEEEEeCCCeEEEEeCCCc
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES--------HVDWVNDAVLVGDNTLVSCSSDTT 106 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~--------h~~~V~~v~~s~d~~l~s~s~Dg~ 106 (764)
...|.+|.. ++++. |..|+.++-|.+||..++. . ..+.. ....|.++...+++.|..|+.+ -
T Consensus 214 ~~~i~~i~~-----d~~g~-lwigt~~~Gl~~~~~~~~~--~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-G 283 (795)
T 4a2l_A 214 TKQIQAILQ-----QSPTR-IWVATEGAGLFLINPKTKE--I-KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-D 283 (795)
T ss_dssp CCCEEEEEE-----EETTE-EEEEEBSSCEEEEETTTTE--E-EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-C
T ss_pred CCeeEEEEE-----cCCCC-EEEEECCCCeEEEeCCCCe--E-EEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-h
Confidence 456888877 34555 4445544458889987632 1 22211 2356899988888877777776 5
Q ss_pred EEEecCCCCCeeeeecc-------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC----CcCCcCc
Q 046871 107 LKTWNCSSDGTCIRTLR-------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA----MEDDCST 175 (764)
Q Consensus 107 V~vWd~~~~~~~~~~l~-------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~----~~~~~~~ 175 (764)
|.+|+. ..+....... .....|.++... .++. |..|+.++-|..|+..+.......... .......
T Consensus 284 l~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~ 360 (795)
T 4a2l_A 284 LNIYHE-GTDSFASYSSNPVENGSLSQRSVRSIFMD-SQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVS 360 (795)
T ss_dssp EEEEET-TTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEE
T ss_pred hheEcC-CCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeE
Confidence 888985 3333322211 123578999887 4554 445666666888887543211000000 0000000
Q ss_pred cccCCCCCCcccceeecCCCCcccccccCCCCccceec-------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 046871 176 GINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAA-------KGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT 248 (764)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~ 248 (764)
.+... .-..+-.....+.+..++........... .-....|.+++..++|+.|..|+.++-|.+||..+
T Consensus 361 ~i~~d----~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 361 CIVED----KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp EEEEC----TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred EEEEC----CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 00000 00011111112233333322211111100 01245799999988888677777777899999988
Q ss_pred CceeEEec----cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee------ecCceEEEEEcCCCCEEEE
Q 046871 249 GSKTIKLR----GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV------HTDSVWALASTPTFSHVYS 318 (764)
Q Consensus 249 ~~~~~~l~----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~------h~~~V~~l~~spd~~~l~s 318 (764)
++...... .....|.++...++|+..+.. . +-|.+||..+++....... +...|.++..++++.+.+.
T Consensus 437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 76433221 234579999999888765544 4 4588999887654332211 2356899999998886665
Q ss_pred ecCCCcEEEEeCCCCeEEEEe---e----cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceecccc
Q 046871 319 GGRDLSLYLTDLATRESLLLC---T----GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLS 390 (764)
Q Consensus 319 gs~Dg~I~iwd~~~~~~~~~~---~----~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
.. +-|..||..++.. ... . ....|.++...+++ +|+++.. .|..||..+.+.. .+...
T Consensus 515 t~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~-~~~~~--------- 580 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIK-RYNTT--------- 580 (795)
T ss_dssp ES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEE-EECGG---------
T ss_pred eC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEE-EeCCC---------
Confidence 54 5688899877665 221 1 23468999998888 9999887 7888987654211 11100
Q ss_pred ccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 391 FSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 391 ~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
+| ++ ...|..+...++|+..+++ . +-|..||..+++. ..|
T Consensus 581 --------~g--------------l~-~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~-~~~ 620 (795)
T 4a2l_A 581 --------NG--------------LP-NNVVYGILEDSFGRLWLST-N-RGISCFNPETEKF-RNF 620 (795)
T ss_dssp --------GT--------------CS-CSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE-EEE
T ss_pred --------CC--------------Cc-hhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcE-EEc
Confidence 00 00 1125566666778766655 3 4578899887664 344
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.90 E-value=3.7e-08 Score=104.39 Aligned_cols=226 Identities=9% Similarity=-0.021 Sum_probs=144.8
Q ss_pred CCCCCCeeEEEeecccccCCCcEEEEEeC-----CCcEEEEeCCCCCCccceeecc------cccceeEEEEeCC-CeE-
Q 046871 32 TKHCAGINCLAVLKSSVSNGVDYLFTGSR-----DGTLKRWSLADDVGSCSATFES------HVDWVNDAVLVGD-NTL- 98 (764)
Q Consensus 32 ~gH~~~V~~l~~~~~~~S~d~~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~l~~------h~~~V~~v~~s~d-~~l- 98 (764)
.+|-..+.++++ +++++++++-.. ++.|.+||+.+ ++.+..+.. +...++++++.++ +.+
T Consensus 63 ~~~~~~p~gv~~-----d~~g~L~v~D~g~~~~~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~y 135 (343)
T 2qe8_A 63 IITFDTVLGIKS-----DGNGIVWMLDNGNQSKSVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVY 135 (343)
T ss_dssp CCCCSCEEEEEE-----CSSSEEEEEECHHHHTSCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEE
T ss_pred ccceeEeeEEEE-----cCCCcEEEEcCCCCcCCCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEEE
Confidence 467788999999 678776665433 57899999987 443444432 2345789999975 554
Q ss_pred EEEe---CCCcEEEecCCCCCeeeeeccccCCceE-EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 99 VSCS---SDTTLKTWNCSSDGTCIRTLRQHSDYVT-CLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 99 ~s~s---~Dg~V~vWd~~~~~~~~~~l~~h~~~V~-~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
++-+ .++.|.+||+ .+++..+.+..|..... ...+. .++..+.+.+.++.+..|.
T Consensus 136 vtd~~~~~~~~i~v~d~-~~g~~~r~~~~~~~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------- 194 (343)
T 2qe8_A 136 ISDPAPDDKAALIRVDL-QTGLAARVLQGYPGIAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------- 194 (343)
T ss_dssp EEECCSGGGCEEEEEET-TTCCEEEECTTCTTTSCCSCCCE-ETTEECBEECTTSCEECCC-------------------
T ss_pred EEcCccCCCCeEEEEEC-CCCCEEEEecCCCccccccccee-ECCEEEEeccCCCceecee-------------------
Confidence 5544 5789999997 44666666655432110 02233 2455555555555544332
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCC---CCc
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEK-VVRVWDPR---TGS 250 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg-~I~iwd~~---~~~ 250 (764)
..+..|+++|+|+.|+.+..++ .|..++.. .+.
T Consensus 195 -------------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~ 231 (343)
T 2qe8_A 195 -------------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ 231 (343)
T ss_dssp -------------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred -------------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence 1256899999999888887666 55555432 111
Q ss_pred -----ee--EEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee-ecCceEEEEEcCCCCEEEEecCC
Q 046871 251 -----KT--IKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV-HTDSVWALASTPTFSHVYSGGRD 322 (764)
Q Consensus 251 -----~~--~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~-h~~~V~~l~~spd~~~l~sgs~D 322 (764)
.. ....++......++++++|+++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..
T Consensus 232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 232 LTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 00 01123444566799999999999998899999999866664333322 23568999999998888877765
Q ss_pred CcEEEE
Q 046871 323 LSLYLT 328 (764)
Q Consensus 323 g~I~iw 328 (764)
+.+.+|
T Consensus 312 ~~~~~f 317 (343)
T 2qe8_A 312 HHSAPL 317 (343)
T ss_dssp GGSGGG
T ss_pred cccccc
Confidence 554433
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=2.9e-06 Score=86.00 Aligned_cols=226 Identities=9% Similarity=-0.035 Sum_probs=140.8
Q ss_pred CcEEEecCCCCCee----eeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 105 TTLKTWNCSSDGTC----IRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 105 g~V~vWd~~~~~~~----~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
+.|+.+++...... ...+......+..+++.+.++.++++-...+.|..+++.....
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~------------------- 70 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP------------------- 70 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-------------------
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-------------------
Confidence 46777776332110 1112222345779999954556666666678999999865310
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCC
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPRTGSKTIKLRGHT 259 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~ 259 (764)
.............+++++++..|+ +-...+.|.++++.............
T Consensus 71 -----------------------------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~ 121 (267)
T 1npe_A 71 -----------------------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121 (267)
T ss_dssp -----------------------------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred -----------------------------EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC
Confidence 000111124568899998655554 44557899999986443222222222
Q ss_pred cCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeeEEEe-eecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCe
Q 046871 260 DNIRSLLLDSTGRYCLSGSS---DSMIRLWDLGQQRCIHSYA-VHTDSVWALASTPTFSHVYSG-GRDLSLYLTDLATRE 334 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~---Dg~I~iwdl~~~~~~~~l~-~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~~~~ 334 (764)
.....++++|++..|+.+.. .+.|..+++.. .....+. ..-.....+++++++..|+.+ ...+.|.++|.....
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 46789999997766665554 36888888753 3333332 223457899999987776644 456899999998655
Q ss_pred EEEEeecCCCeEEEEeeCCceEEEeC-CCcEEEeeCCCCCCceeee
Q 046871 335 SLLLCTGEHPILQLALHDDNIWVATT-DSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 335 ~~~~~~~~~~V~~l~~spd~l~~~s~-dg~I~iwd~~~~~~~~~~~ 379 (764)
.............++...+.++++.. .+.|.++|..+++....+.
T Consensus 201 ~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 201 RRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 44444433445677776544777664 5899999998887766665
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=1.4e-06 Score=98.65 Aligned_cols=309 Identities=14% Similarity=0.076 Sum_probs=172.4
Q ss_pred CcEEEEEeC-CCcEEEEeC-CCCCCccceeeccccc----------ce-eEEEEeCCCeEEEEeCCCcEEEecCCCCCee
Q 046871 52 VDYLFTGSR-DGTLKRWSL-ADDVGSCSATFESHVD----------WV-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTC 118 (764)
Q Consensus 52 ~~~L~sgs~-Dg~I~iWd~-~~~~~~~~~~l~~h~~----------~V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~ 118 (764)
+..++.++. ++.|..+|. .+ ++.+-++..... .+ ..+++ .++.++.++.|+.|..+|. .+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~-~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDP--GKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDA-KTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCT--TSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEET-TTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCC--ccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEEC-CCCCE
Confidence 456777777 899999999 77 444444332111 00 11233 2468888889999999996 45655
Q ss_pred eeecc--ccC--CceEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 119 IRTLR--QHS--DYVTC-LAAAEKNSNIVASGGL------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 119 ~~~l~--~h~--~~V~~-l~~~p~~~~~lasg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
+-... .+. ..+.+ .... +..++.++. ++.|..+|..+++..-+........ ........ ...
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~--~~~~~p~~--~~~ 210 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDD--SVRLAKDF--NSA 210 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHH--HHTBCTTT--TTT
T ss_pred EEEecCCCCCccceeccCCEEE---CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcc--ccccCccc--ccc
Confidence 44332 111 01111 1112 335555554 7899999999875442211000000 00000000 000
Q ss_pred ceeecCC-CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCc
Q 046871 188 SLRTIGS-SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE----------------KVVRVWDPRTGS 250 (764)
Q Consensus 188 ~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d----------------g~I~iwd~~~~~ 250 (764)
. ...+. ......|.. ... ..+.......+++.++...++.+..+ +.|..+|.++|+
T Consensus 211 ~-~~~G~~~~g~~~w~~----~~~--~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~ 283 (571)
T 2ad6_A 211 N-PHYGQFGLGTKTWEG----DAW--KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM 283 (571)
T ss_dssp C-GGGCCSSHHHHTSST----TGG--GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC
T ss_pred c-ccccccccccccCcc----cce--ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc
Confidence 0 00000 000000100 000 00001111234556655666665532 369999999999
Q ss_pred eeEEeccC--C--------cCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCeeeEEEeeec-------------Cce
Q 046871 251 KTIKLRGH--T--------DNIRSLLLDSTGR---YCLSGSSDSMIRLWDLGQQRCIHSYAVHT-------------DSV 304 (764)
Q Consensus 251 ~~~~l~~h--~--------~~V~~l~~spdg~---~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-------------~~V 304 (764)
.+..++.. . .++. +....+|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 284 ~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~ 362 (571)
T 2ad6_A 284 AKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPV 362 (571)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEE
T ss_pred EEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCcee
Confidence 98877532 1 1221 22224674 57788899999999999999887765321 111
Q ss_pred --------------------------EEEEEcCCCCEEEEec-------------------------------------C
Q 046871 305 --------------------------WALASTPTFSHVYSGG-------------------------------------R 321 (764)
Q Consensus 305 --------------------------~~l~~spd~~~l~sgs-------------------------------------~ 321 (764)
..++++|+..+|+... .
T Consensus 363 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~ 442 (571)
T 2ad6_A 363 RDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKE 442 (571)
T ss_dssp ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCC
T ss_pred cccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCC
Confidence 2357888877777653 3
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCeEEEEe-eCCc-eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 322 DLSLYLTDLATRESLLLCTGEHPILQLAL-HDDN-IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 322 Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~-spd~-l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
+|.|..||..+++.+..+....++....+ ..++ +++++.|+.|+.||..+++.+-.+.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 57899999999999888776554443322 2344 8889999999999999998877665
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.83 E-value=1.1e-06 Score=93.81 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=110.3
Q ss_pred cEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeccCCc---CeEEEEEcCCCCEEEEEe-----------
Q 046871 219 SVYALAMNDSGNLLVSGGTE------KVVRVWDPRTGSKTIKLRGHTD---NIRSLLLDSTGRYCLSGS----------- 278 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~d------g~I~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~sgs----------- 278 (764)
.-..+...|+| +++++..+ +.|.++|..+++.+.++..... --..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 34567788999 77765554 7899999999999998863222 234588899999988884
Q ss_pred --------CCCcEEEEeCCCCeeeEEEeeec--CceEEEEE--cCCCCEEEEec------CCCcEEEEeCCCCeE--EEE
Q 046871 279 --------SDSMIRLWDLGQQRCIHSYAVHT--DSVWALAS--TPTFSHVYSGG------RDLSLYLTDLATRES--LLL 338 (764)
Q Consensus 279 --------~Dg~I~iwdl~~~~~~~~l~~h~--~~V~~l~~--spd~~~l~sgs------~Dg~I~iwd~~~~~~--~~~ 338 (764)
.+.+|.+||+.+++.++++.... .....+.| +|++++++.++ .+++|.+|....+.. ...
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 36889999999998888887531 23455656 99999988776 466888776654431 111
Q ss_pred e--ec-----------------CCCeEEEEeeCCc--eEEEeC-CCcEEEeeCCCC
Q 046871 339 C--TG-----------------EHPILQLALHDDN--IWVATT-DSSVHRWPAEGR 372 (764)
Q Consensus 339 ~--~~-----------------~~~V~~l~~spd~--l~~~s~-dg~I~iwd~~~~ 372 (764)
+ .. ......+.+++|+ |+++.. .+.|.+||+...
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 1 00 2346789999999 777776 689999998643
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=3.4e-06 Score=95.45 Aligned_cols=310 Identities=10% Similarity=0.047 Sum_probs=171.7
Q ss_pred CcEEEEEeC-CCcEEEEeC-CCCCCccceeeccccc-----------ceeEEEEeC-CCe----EEEEeCCCcEEEecCC
Q 046871 52 VDYLFTGSR-DGTLKRWSL-ADDVGSCSATFESHVD-----------WVNDAVLVG-DNT----LVSCSSDTTLKTWNCS 113 (764)
Q Consensus 52 ~~~L~sgs~-Dg~I~iWd~-~~~~~~~~~~l~~h~~-----------~V~~v~~s~-d~~----l~s~s~Dg~V~vWd~~ 113 (764)
+..|+.++. ++.|..+|. .+ ++.+-++..... ....+++.| ++. ++.++.|+.|..+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~t--G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa- 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDP--GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA- 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCT--TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET-
T ss_pred CCEEEEEeCCCCEEEEEeCCCC--CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC-
Confidence 567777777 899999999 77 444444432211 012345543 345 888999999999996
Q ss_pred CCCeeeeeccccC----CceEE-EEEecCCCcEEEEEe------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC
Q 046871 114 SDGTCIRTLRQHS----DYVTC-LAAAEKNSNIVASGG------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 114 ~~~~~~~~l~~h~----~~V~~-l~~~p~~~~~lasg~------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
.+++.+-...... ..+.+ -.+. ++ .++.++ .++.|+.+|..+++..-+......... ..+.. ..
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~-~~~~p-~~ 213 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKD-LLLAS-DF 213 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH-HTBCT-TT
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccc-ccccc-cc
Confidence 4565543332111 01111 1122 23 455554 378999999998754421110000000 00000 00
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcE-EEEEEcCCCCEEEEEeCC----------------CeEEEEe
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESV-YALAMNDSGNLLVSGGTE----------------KVVRVWD 245 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V-~~l~~sp~g~~l~sgs~d----------------g~I~iwd 245 (764)
......+. ........|. +... ..+ ...+ ..+++.++..+++.+..+ +.|..+|
T Consensus 214 ~~~~~~~g--~~~~g~~tw~----g~~~--~~g-g~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald 284 (599)
T 1w6s_A 214 NIKNPHYG--QKGLGTGTWE----GDAW--KIG-GGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD 284 (599)
T ss_dssp TTTCGGGC--CTTHHHHTSS----TTGG--GGC-CCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE
T ss_pred cccccccc--ccccccccCC----Ccce--ecC-CCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEe
Confidence 00000000 0000000000 0000 001 1111 134556666777777654 3799999
Q ss_pred CCCCceeEEeccCCc----------CeEEEEEc-CCC---CEEEEEeCCCcEEEEeCCCCeeeEEEeeec----------
Q 046871 246 PRTGSKTIKLRGHTD----------NIRSLLLD-STG---RYCLSGSSDSMIRLWDLGQQRCIHSYAVHT---------- 301 (764)
Q Consensus 246 ~~~~~~~~~l~~h~~----------~V~~l~~s-pdg---~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~---------- 301 (764)
.++|+.+..++.... ++. +... .+| +.++.++.+|.++++|..+++.+.......
T Consensus 285 ~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 285 ADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp TTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred CCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 999999887764221 121 2222 567 467778999999999999999887664211
Q ss_pred --C-ce--------------------------EEEEEcCCCCEEEEe---------------------------------
Q 046871 302 --D-SV--------------------------WALASTPTFSHVYSG--------------------------------- 319 (764)
Q Consensus 302 --~-~V--------------------------~~l~~spd~~~l~sg--------------------------------- 319 (764)
+ ++ ..++++|+..+++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0 11 245677766665542
Q ss_pred c------CCCcEEEEeCCCCeEEEEeecCCCeEEE-EeeCCc-eEEEeCCCcEEEeeCCCCCCceeee
Q 046871 320 G------RDLSLYLTDLATRESLLLCTGEHPILQL-ALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 320 s------~Dg~I~iwd~~~~~~~~~~~~~~~V~~l-~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~ 379 (764)
+ .+|.|..||+.+++.+.......+...- .....+ +++++.|+.++.||.++++.+-.++
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 1 3578999999999988877655443321 222344 8889999999999999998776664
No 243
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=6.2e-05 Score=88.87 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=196.1
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec--------ccccceeEEEEeCCCeEEEEeCCCcE
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE--------SHVDWVNDAVLVGDNTLVSCSSDTTL 107 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~--------~h~~~V~~v~~s~d~~l~s~s~Dg~V 107 (764)
..|.++.. ++++ .|..|..++-|..||..+... ..+. -....|.++...+++.|..++.+ -+
T Consensus 163 ~~i~~i~~-----d~~g-~lwigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl 232 (781)
T 3v9f_A 163 EQTWTATE-----AEDG-KLYIGHVEGGLSILSLNDKSV---KHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GL 232 (781)
T ss_dssp CCEEEEEE-----EETT-EEEEEETTTEEEEEETTTTEE---EEECC--------CCSSEEEEEECTTCCEEEEETT-EE
T ss_pred cceEEEEE-----CCCC-CEEEEecCCCeEEEcCCCCce---EeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cH
Confidence 45777776 3444 455566665688899876321 1221 11346888888888877777766 58
Q ss_pred EEecCCCCCeeeeecc-------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCC
Q 046871 108 KTWNCSSDGTCIRTLR-------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGS 180 (764)
Q Consensus 108 ~vWd~~~~~~~~~~l~-------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 180 (764)
.+||. ..+....... .....|.++... .++. |..|+..+-|.++|..+..........
T Consensus 233 ~~~d~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~------------ 297 (781)
T 3v9f_A 233 ALFNA-NTETFTNFHNNPGNIHGALSSYIFSIKQL-KDNK-LWIATELNGIMILDLQQNQFLLPEQIR------------ 297 (781)
T ss_dssp EEEET-TTTEEEC-----------CCCCEEEEEEC-TTSE-EEEEESSSCEEEEETTCC---------------------
T ss_pred heECC-CCCcEEEEEcCCCccccccCceEEEEEEC-CCCC-EEEEeCCCCeEEECCCCCeeeeeeccc------------
Confidence 88985 3333222111 123568888876 4444 555666445888998754211000000
Q ss_pred CCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEec----
Q 046871 181 GNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLR---- 256 (764)
Q Consensus 181 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~---- 256 (764)
+. ...... ....-....|.++...++|. |..|+.++-|..++..+........
T Consensus 298 -----f~------------~~~~~~-----~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 298 -----FE------------FIREGD-----NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp -----CE------------EECBCS-----STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred -----cc------------cccCCC-----CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc
Confidence 00 000000 00111345689999988886 5667767778899987654322110
Q ss_pred -----cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE---eeecCceEEEEEcCCCCEEEEecCCCcEEEE
Q 046871 257 -----GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY---AVHTDSVWALASTPTFSHVYSGGRDLSLYLT 328 (764)
Q Consensus 257 -----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l---~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iw 328 (764)
.....|.+++..++|. |..|+.++-|..||..++...... ......|.++...+++.+.+ |+.++-|..+
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~ 432 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYY 432 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEE
T ss_pred cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEE
Confidence 1235799999988876 455666667889998654332211 12345799999988876544 6666779999
Q ss_pred eCCCCeEEEEee---cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCc
Q 046871 329 DLATRESLLLCT---GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV 404 (764)
Q Consensus 329 d~~~~~~~~~~~---~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 404 (764)
+..+++...... ....|.++...+++ +++|+. +.|.+|+..+++.........
T Consensus 433 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~---------------------- 489 (781)
T 3v9f_A 433 NTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSN---------------------- 489 (781)
T ss_dssp CSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTT----------------------
T ss_pred cCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcc----------------------
Confidence 988776544322 24578999998888 999988 678899887654322111000
Q ss_pred ccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEe
Q 046871 405 SSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVV 453 (764)
Q Consensus 405 ~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i 453 (764)
... ....|..+...++|+..+.....| |..||..+++..
T Consensus 490 --------~~~-~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~ 528 (781)
T 3v9f_A 490 --------SQL-LENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR 528 (781)
T ss_dssp --------SSC-SCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE
T ss_pred --------ccc-ccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE
Confidence 000 013366677777887655443344 778998776543
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=1.8e-06 Score=99.85 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=121.3
Q ss_pred CCeEEEEeCCCcEEEecCCCCCeeeeeccccCC----------ce-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 046871 95 DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSD----------YV-TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPS 163 (764)
Q Consensus 95 d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~----------~V-~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~ 163 (764)
++.++.++.++.|..+|. .+++.+-.+..... .+ ..+++. +..++.++.|+.|..+|..+++..-
T Consensus 66 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEee
Confidence 567777778888888886 45655444332211 00 122333 5677888899999999998864331
Q ss_pred CCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC------
Q 046871 164 KSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT------ 237 (764)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~------ 237 (764)
..... ... ........++ +. +..++++..
T Consensus 142 ~~~~~--------------------------------------~~~-~~~~~~~~P~----v~--~~~v~vg~~~~~~~~ 176 (668)
T 1kv9_A 142 SQQTT--------------------------------------DPA-KPYSITGAPR----VV--KGKVIIGNGGAEYGV 176 (668)
T ss_dssp EEECS--------------------------------------CTT-SSCBCCSCCE----EE--TTEEEECCBCTTTCC
T ss_pred eeccC--------------------------------------CCC-CcceecCCCE----EE--CCEEEEeCCCCCcCC
Confidence 10000 000 0000001111 11 334555433
Q ss_pred CCeEEEEeCCCCceeEEeccCC-------------------------------cCeEEEEEcCCCCEEEEEeCCCc----
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHT-------------------------------DNIRSLLLDSTGRYCLSGSSDSM---- 282 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~-------------------------------~~V~~l~~spdg~~l~sgs~Dg~---- 282 (764)
+|.|+.+|.++|+.+.++.... .....++++++...++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999999988775210 01124688888889988887763
Q ss_pred ---------------EEEEeCCCCeeeEEEee--ec-------CceEEEEEcCCCC---EEEEecCCCcEEEEeCCCCeE
Q 046871 283 ---------------IRLWDLGQQRCIHSYAV--HT-------DSVWALASTPTFS---HVYSGGRDLSLYLTDLATRES 335 (764)
Q Consensus 283 ---------------I~iwdl~~~~~~~~l~~--h~-------~~V~~l~~spd~~---~l~sgs~Dg~I~iwd~~~~~~ 335 (764)
|..+|..+|+.+..++. |. .+.....+..+++ .++.++.+|.++++|..+|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 99999999999888874 22 2222223333564 688999999999999999998
Q ss_pred EEEe
Q 046871 336 LLLC 339 (764)
Q Consensus 336 ~~~~ 339 (764)
+...
T Consensus 337 l~~~ 340 (668)
T 1kv9_A 337 ISAE 340 (668)
T ss_dssp EEEE
T ss_pred eccc
Confidence 7443
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=8.2e-05 Score=87.85 Aligned_cols=279 Identities=13% Similarity=0.066 Sum_probs=174.8
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCcccee------------ecccccceeEEEEeCCCeEEEEeC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSAT------------FESHVDWVNDAVLVGDNTLVSCSS 103 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~------------l~~h~~~V~~v~~s~d~~l~s~s~ 103 (764)
..|.+|.. +++|. |..|+..+-|.++|..+........ ..-....|.++....++.|..|+.
T Consensus 258 ~~i~~i~~-----d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~ 331 (781)
T 3v9f_A 258 SYIFSIKQ-----LKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTW 331 (781)
T ss_dssp CCEEEEEE-----CTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEB
T ss_pred ceEEEEEE-----CCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEec
Confidence 46888887 35554 5556665678889987643221111 011345688888888888888888
Q ss_pred CCcEEEecCCCCCeeeeecc----------ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCc
Q 046871 104 DTTLKTWNCSSDGTCIRTLR----------QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDC 173 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~----------~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 173 (764)
++-|..++... .. ...+. .....|.++... .++. |..|+.++-|..||..+.....
T Consensus 332 ~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~~~~~~~---------- 397 (781)
T 3v9f_A 332 GGGINFISNAP-PT-FHTWSYSPTQMNESSLSNKVVSSVCDD-GQGK-LWIGTDGGGINVFENGKRVAIY---------- 397 (781)
T ss_dssp SSCEEEECSSC-CS-CEEEC----CCCSSCCSSSCEEEEEEC-TTSC-EEEEEBSSCEEEEETTEEEEEC----------
T ss_pred CCeEEEeCCCC-Cc-ceeeccCccccccCCCCCcceEEEEEc-CCCC-EEEEeCCCcEEEEECCCCeEEE----------
Confidence 88889998532 22 11111 123568888877 4444 4456655558889876531100
Q ss_pred CccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 046871 174 STGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
+. .........|.++...++|.+ ..|+.++-|..+|..+++...
T Consensus 398 ---------------------------~~--------~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 398 ---------------------------NK--------ENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp ---------------------------C-------------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEE
T ss_pred ---------------------------cc--------CCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEE
Confidence 00 000112456899998887764 446666779999987765432
Q ss_pred Eec--cCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee-----cCceEEEEEcCCCCEEEEecCCCcEE
Q 046871 254 KLR--GHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH-----TDSVWALASTPTFSHVYSGGRDLSLY 326 (764)
Q Consensus 254 ~l~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h-----~~~V~~l~~spd~~~l~sgs~Dg~I~ 326 (764)
... .....|.++...++|.. ..|+. +-|..||..+++........ ...|.++...+++.+.+. +.++-|.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~ 518 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVG 518 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEE
T ss_pred eccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEE
Confidence 221 13467999998888764 44555 56889998776554332212 357899999988876554 4444478
Q ss_pred EEeCCCCeEEEEee----cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCC
Q 046871 327 LTDLATRESLLLCT----GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRN 373 (764)
Q Consensus 327 iwd~~~~~~~~~~~----~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~ 373 (764)
.+|..+++...... ....|.++...+++ +++++.+|-|..||..+++
T Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 519 IYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp EECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC
T ss_pred EEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCc
Confidence 89987765443322 13468899998888 9999986655889887654
No 246
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.73 E-value=1.4e-05 Score=90.45 Aligned_cols=315 Identities=12% Similarity=0.119 Sum_probs=171.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCccceeecccccc--------e-eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeec
Q 046871 52 VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDW--------V-NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTL 122 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~--------V-~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l 122 (764)
+..++.++.++.|..+|..+ ++.+-++...... + ..+++ .++.++.++.|+.|..+|. .+++.+-..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~-~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKT--GKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNK-NTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSS--CCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEES-SSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCC--CcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEEC-CCCCEEeee
Confidence 45566666644588899988 4444444332111 0 12222 2467888889999999996 456554333
Q ss_pred cccC---C-ceE-EEEEecC--CCc-EEEEEe------CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 123 RQHS---D-YVT-CLAAAEK--NSN-IVASGG------LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 123 ~~h~---~-~V~-~l~~~p~--~~~-~lasg~------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
.... . .+. .-..... +++ .+++++ .++.|.-+|..+++..-...... ..+.... ..
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~-----~~~~p~~-----~~ 213 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE-----GHMGRLN-----GK 213 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST-----TCEEEET-----TE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCc-----ccccccc-----Cc
Confidence 2211 0 111 1111101 122 565654 37899999998875442110000 0000000 00
Q ss_pred eeecCCCCcccccccC---CCCccceeccCCCCcEEEEEEcCCCCEEEEEeC--------------------C----CeE
Q 046871 189 LRTIGSSNSISAHTSQ---SQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT--------------------E----KVV 241 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~--------------------d----g~I 241 (764)
............|... ..+.......+....-..++++|+..+++.+.. | +.|
T Consensus 214 ~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v 293 (582)
T 1flg_A 214 DSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQ 293 (582)
T ss_dssp EEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEE
T ss_pred ccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceE
Confidence 0000000001111100 000000000011111124567777777776653 2 689
Q ss_pred EEEeCCCCceeEEecc--CCc----CeEE-EEEc---CCCC---EEEEEeCCCcEEEEeCCCCeeeEEEeeecC------
Q 046871 242 RVWDPRTGSKTIKLRG--HTD----NIRS-LLLD---STGR---YCLSGSSDSMIRLWDLGQQRCIHSYAVHTD------ 302 (764)
Q Consensus 242 ~iwd~~~~~~~~~l~~--h~~----~V~~-l~~s---pdg~---~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~------ 302 (764)
..+|.++|+.+..++. |.. .+.. +.+. .+|+ .++.++.+|.++++|..+|+.+..+.....
T Consensus 294 ~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 373 (582)
T 1flg_A 294 VGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASH 373 (582)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEE
T ss_pred EEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccc
Confidence 9999999999988753 211 1111 2222 4674 688899999999999999998877653320
Q ss_pred -------ce--------------------------------EEEEEcCCCCEEEEec-----------------------
Q 046871 303 -------SV--------------------------------WALASTPTFSHVYSGG----------------------- 320 (764)
Q Consensus 303 -------~V--------------------------------~~l~~spd~~~l~sgs----------------------- 320 (764)
++ ..++++|+...++...
T Consensus 374 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 453 (582)
T 1flg_A 374 IDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGM 453 (582)
T ss_dssp ECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecc
Confidence 00 1345666655665432
Q ss_pred ----------CCCcEEEEeCCCCeEEEEeecCCCeEEE-EeeCCc-eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 321 ----------RDLSLYLTDLATRESLLLCTGEHPILQL-ALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 321 ----------~Dg~I~iwd~~~~~~~~~~~~~~~V~~l-~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.+|.|..||+.+++.+.......++..- ....++ +++++.|+.++.||.++++.+-.++.
T Consensus 454 ~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 454 GFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 3688999999999988777655444321 123344 88899999999999999998777654
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.73 E-value=4.3e-06 Score=89.20 Aligned_cols=223 Identities=8% Similarity=0.035 Sum_probs=141.1
Q ss_pred CCCcEEEEE-eCCCcEEEEeCCCC--CCccceeec------c-cccceeEEEEeCCCeEEEEeCC------CcEEEecCC
Q 046871 50 NGVDYLFTG-SRDGTLKRWSLADD--VGSCSATFE------S-HVDWVNDAVLVGDNTLVSCSSD------TTLKTWNCS 113 (764)
Q Consensus 50 ~d~~~L~sg-s~Dg~I~iWd~~~~--~~~~~~~l~------~-h~~~V~~v~~s~d~~l~s~s~D------g~V~vWd~~ 113 (764)
.++++|+.. ..++.|.+.|+.+. ..+...+++ . ....-..+...|++.++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~- 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDH- 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECT-
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEEC-
Confidence 778877765 46789999999753 224455552 0 1123455677899966666555 78999996
Q ss_pred CCCeeeeecccc--C-CceEEEEEecCCCcEEEEEe-------------------CCCeEEEEeCCCCCCCCCCCCCCcC
Q 046871 114 SDGTCIRTLRQH--S-DYVTCLAAAEKNSNIVASGG-------------------LGAEVFIWDIEAALAPSKSGDAMED 171 (764)
Q Consensus 114 ~~~~~~~~l~~h--~-~~V~~l~~~p~~~~~lasg~-------------------~dg~I~iwdl~~~~~~~~~~~~~~~ 171 (764)
.+.+.+..+... . ..-..+.|+ ++.+.+++.. .+.+|.+||+.+.+...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-------- 242 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-------- 242 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--------
T ss_pred CCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--------
Confidence 556777766522 1 223357778 6778888874 36889999998631110
Q ss_pred CcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEE--cCCCCEEEEEe------CCCeEEE
Q 046871 172 DCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAM--NDSGNLLVSGG------TEKVVRV 243 (764)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~--sp~g~~l~sgs------~dg~I~i 243 (764)
.............+.| +|+++++++++ .++.|.+
T Consensus 243 --------------------------------------tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v 284 (462)
T 2ece_A 243 --------------------------------------SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWL 284 (462)
T ss_dssp --------------------------------------EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEE
T ss_pred --------------------------------------EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEE
Confidence 0001101122344545 99999888777 4567877
Q ss_pred EeCCCCce--eEE--eccC----------------CcCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCC---CeeeEEEee
Q 046871 244 WDPRTGSK--TIK--LRGH----------------TDNIRSLLLDSTGRYCLSGSS-DSMIRLWDLGQ---QRCIHSYAV 299 (764)
Q Consensus 244 wd~~~~~~--~~~--l~~h----------------~~~V~~l~~spdg~~l~sgs~-Dg~I~iwdl~~---~~~~~~l~~ 299 (764)
|....++. ... +... ......|.+++||++|+++.. .+.|.+||+.. .+.+..+..
T Consensus 285 ~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 285 WFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp EEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 65544421 111 1110 235688999999999887765 67899999853 345555443
Q ss_pred ec--------------CceEEEEEcCCCCEEEEec
Q 046871 300 HT--------------DSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 300 h~--------------~~V~~l~~spd~~~l~sgs 320 (764)
.. +.-..++++|||++|+.+.
T Consensus 365 GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 365 GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 21 1357899999999999887
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=1.3e-05 Score=90.75 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=75.8
Q ss_pred CEEEEEeC------CCeEEEEeCCCCceeEEeccCCcC--------------------------------------eEEE
Q 046871 230 NLLVSGGT------EKVVRVWDPRTGSKTIKLRGHTDN--------------------------------------IRSL 265 (764)
Q Consensus 230 ~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~--------------------------------------V~~l 265 (764)
..+++++. ++.|..+|.++|+.+.++...... ...+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45566554 789999999999998876532110 0235
Q ss_pred EEcCCCCEEEEEeCC----------------CcEEEEeCCCCeeeEEEeeec----------CceEEEEEcCCCC---EE
Q 046871 266 LLDSTGRYCLSGSSD----------------SMIRLWDLGQQRCIHSYAVHT----------DSVWALASTPTFS---HV 316 (764)
Q Consensus 266 ~~spdg~~l~sgs~D----------------g~I~iwdl~~~~~~~~l~~h~----------~~V~~l~~spd~~---~l 316 (764)
+++++...++.++.+ +.|..+|..+++.+..++... .++ -+....+|+ .+
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLL 319 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEE
Confidence 677776777766542 359999999999988876321 112 122224674 57
Q ss_pred EEecCCCcEEEEeCCCCeEEEEee
Q 046871 317 YSGGRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 317 ~sgs~Dg~I~iwd~~~~~~~~~~~ 340 (764)
+.++.+|.++++|..+|+.+....
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCcEEEEEECCCCCEEeeec
Confidence 788999999999999999876654
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.59 E-value=1.1e-05 Score=80.76 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=135.7
Q ss_pred eeeeccccCC--ceEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 118 CIRTLRQHSD--YVTCLAAAEKNSNIVASGGL--GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 118 ~~~~l~~h~~--~V~~l~~~p~~~~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
.+.++ .|.. ....++|+ +++.++++.+. ++.|.++|+.+++.....
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i---------------------------- 60 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIH---------------------------- 60 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEE----------------------------
T ss_pred EEEEE-ECCCCCCcccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEE----------------------------
Confidence 34444 3443 36799999 55655555553 579999999875322110
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR 272 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 272 (764)
.+..+ .....+++. ++.|+ +.-.++.+.++|..+++.+.++..... ....+++||+
T Consensus 61 ------------------~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~ 117 (266)
T 2iwa_A 61 ------------------KMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGK 117 (266)
T ss_dssp ------------------ECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSS
T ss_pred ------------------ecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCC
Confidence 01111 112245554 44444 455678999999999999988863311 1234566888
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEEeeec-----CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC-----
Q 046871 273 YCLSGSSDSMIRLWDLGQQRCIHSYAVHT-----DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE----- 342 (764)
Q Consensus 273 ~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~-----~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~----- 342 (764)
.++++..+++|.++|..+.+.+.++.... ..++.+.|. ++..++....++.|.+.|..+++.+..+...
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~ 196 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK 196 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 88777778999999999998888876432 246788888 6755555556889999999999988877632
Q ss_pred ---------CCeEEEEeeCCc--eEE-EeCCCcEEEeeCCCC
Q 046871 343 ---------HPILQLALHDDN--IWV-ATTDSSVHRWPAEGR 372 (764)
Q Consensus 343 ---------~~V~~l~~spd~--l~~-~s~dg~I~iwd~~~~ 372 (764)
.....++++|++ +++ +...+.+.+.++...
T Consensus 197 ~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 197 LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 245899999997 444 446788888887654
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=9.3e-06 Score=81.37 Aligned_cols=203 Identities=12% Similarity=0.033 Sum_probs=138.5
Q ss_pred EEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeccCC-cCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeeeE
Q 046871 220 VYALAMNDSGNLLVSGGT--EKVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDSTGRYCLSG-SSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~--dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~sg-s~Dg~I~iwdl~~~~~~~ 295 (764)
...++|++++.+.++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.|+.+ -.++.+.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 579999998755555443 6799999999999988865222 122345554 5555544 457899999999999999
Q ss_pred EEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC---C---CeEEEEeeCCc-eEEEeC-CCcEEEe
Q 046871 296 SYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE---H---PILQLALHDDN-IWVATT-DSSVHRW 367 (764)
Q Consensus 296 ~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---~---~V~~l~~spd~-l~~~s~-dg~I~iw 367 (764)
++......-+. +++|++.++.+..++.|.++|..+.+.+..+.-. . .++.+.|. ++ +++... ++.|.+.
T Consensus 101 ~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 101 NFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 98643122233 4557777777777899999999998877766632 1 36788888 56 777764 6899999
Q ss_pred eCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCc-EEEEeeCCCcEEEEE
Q 046871 368 PAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRR-HVLTKDAAGSVKLWE 446 (764)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~-~l~t~s~dG~V~lWd 446 (764)
|..+++....+.-..-... .+ . ...+.......++++++++ .++|+...+.|.+-+
T Consensus 178 D~~tg~V~~~I~~~g~~~~-~~--~--------------------~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKK-LI--D--------------------EGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp ETTTCCEEEEEECHHHHHH-HH--H--------------------TTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred ECCCCcEEEEEECCCcccc-cc--c--------------------ccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 9999998877752100000 00 0 0001122357889999976 556777888999998
Q ss_pred cccc
Q 046871 447 ITRG 450 (764)
Q Consensus 447 i~tg 450 (764)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8764
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.57 E-value=2.4e-06 Score=94.32 Aligned_cols=152 Identities=15% Similarity=0.167 Sum_probs=112.8
Q ss_pred CcEEEEEE-c-CCCCEEEEEe------------------CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEE
Q 046871 218 ESVYALAM-N-DSGNLLVSGG------------------TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 218 ~~V~~l~~-s-p~g~~l~sgs------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg 277 (764)
.....+++ + |+++++++++ .++.+.++|..+.+...++.-.. ....++++|||+++++.
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST 212 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence 34678887 4 8999988884 24579999999998888876322 45678899999999888
Q ss_pred eCCC--------------------------------------cEEEEeCCC--Cee-eEEEeeecCceEEEEEcCCCCEE
Q 046871 278 SSDS--------------------------------------MIRLWDLGQ--QRC-IHSYAVHTDSVWALASTPTFSHV 316 (764)
Q Consensus 278 s~Dg--------------------------------------~I~iwdl~~--~~~-~~~l~~h~~~V~~l~~spd~~~l 316 (764)
+.+. .|.+.|.++ ++. +..+... ....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEE
Confidence 7553 467777776 444 4445432 345689999999988
Q ss_pred EEec-CCCcEEEEeCCCCe------------EEEEeecCCCeEEEEeeCCc-eEEE-eCCCcEEEeeCCC
Q 046871 317 YSGG-RDLSLYLTDLATRE------------SLLLCTGEHPILQLALHDDN-IWVA-TTDSSVHRWPAEG 371 (764)
Q Consensus 317 ~sgs-~Dg~I~iwd~~~~~------------~~~~~~~~~~V~~l~~spd~-l~~~-s~dg~I~iwd~~~ 371 (764)
+.++ .+.+|.++|+.+.+ .............++|+++| +++. --|++|.+||++.
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 7554 68899999998653 34445556778999999999 4444 4589999999976
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.52 E-value=3e-05 Score=87.73 Aligned_cols=103 Identities=11% Similarity=0.054 Sum_probs=74.1
Q ss_pred CCCeEEEEeCCCCceeEEeccCCcC-------------------------------------e-EEEEEcCCCCEEEEEe
Q 046871 237 TEKVVRVWDPRTGSKTIKLRGHTDN-------------------------------------I-RSLLLDSTGRYCLSGS 278 (764)
Q Consensus 237 ~dg~I~iwd~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~spdg~~l~sgs 278 (764)
.++.|+.+|.++|+.+.++...... + ..+++.++..+++.++
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3799999999999998876532211 0 1356777778888777
Q ss_pred CCC----------------cEEEEeCCCCeeeEEEeeecC----------ceEEEEEc-CCC---CEEEEecCCCcEEEE
Q 046871 279 SDS----------------MIRLWDLGQQRCIHSYAVHTD----------SVWALAST-PTF---SHVYSGGRDLSLYLT 328 (764)
Q Consensus 279 ~Dg----------------~I~iwdl~~~~~~~~l~~h~~----------~V~~l~~s-pd~---~~l~sgs~Dg~I~iw 328 (764)
.++ .|..+|..+|+.+..++.... ++. +... .+| ..++.++.+|.+++.
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 653 799999999999888764321 121 2222 567 567889999999999
Q ss_pred eCCCCeEEEEee
Q 046871 329 DLATRESLLLCT 340 (764)
Q Consensus 329 d~~~~~~~~~~~ 340 (764)
|..+|+.+....
T Consensus 339 D~~tG~~lw~~~ 350 (599)
T 1w6s_A 339 DRTDGALVSANK 350 (599)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEeeccc
Confidence 999999886554
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=4e-05 Score=86.79 Aligned_cols=103 Identities=15% Similarity=0.038 Sum_probs=71.6
Q ss_pred CCeEEEEeCCCCceeEEeccCCcCe-----------------------------------------EEEEEcCCCCEEEE
Q 046871 238 EKVVRVWDPRTGSKTIKLRGHTDNI-----------------------------------------RSLLLDSTGRYCLS 276 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~~h~~~V-----------------------------------------~~l~~spdg~~l~s 276 (764)
++.|+.+|..+|+.+.........+ ..++++|+..+++.
T Consensus 183 ~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv 262 (582)
T 1flg_A 183 VGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIV 262 (582)
T ss_dssp BCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEE
Confidence 7899999999998887654211000 13567777777776
Q ss_pred EeC--------------------C----CcEEEEeCCCCeeeEEEee--ec--------CceEEEEEc-CCCC---EEEE
Q 046871 277 GSS--------------------D----SMIRLWDLGQQRCIHSYAV--HT--------DSVWALAST-PTFS---HVYS 318 (764)
Q Consensus 277 gs~--------------------D----g~I~iwdl~~~~~~~~l~~--h~--------~~V~~l~~s-pd~~---~l~s 318 (764)
++. | +.|..+|..+|+.+..++. |. .++. +... .+|+ .++.
T Consensus 263 ~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~ 341 (582)
T 1flg_A 263 GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAH 341 (582)
T ss_dssp EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEE
T ss_pred eCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEE
Confidence 663 2 5899999999999988763 22 1121 1221 4674 7889
Q ss_pred ecCCCcEEEEeCCCCeEEEEeec
Q 046871 319 GGRDLSLYLTDLATRESLLLCTG 341 (764)
Q Consensus 319 gs~Dg~I~iwd~~~~~~~~~~~~ 341 (764)
++.+|.++++|..+|+.+.....
T Consensus 342 ~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 342 ADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp ECTTSEEEEEETTTCCEEEEEES
T ss_pred ECCCceEEEEECCCCCEeccccc
Confidence 99999999999999998865543
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=1.7e-05 Score=78.60 Aligned_cols=190 Identities=12% Similarity=0.100 Sum_probs=129.1
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeeEE
Q 046871 220 VYALAMNDSGNLLVSGGTEK--VVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRLWDLGQQRCIHS 296 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwdl~~~~~~~~ 296 (764)
...|.|+ ++.++.+++.+| .|+++|+.+++.+.++.... ......+.+++..|+... .++.+.+||..+.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788888 666677777766 89999999999988876432 333322333455665554 488999999999999999
Q ss_pred EeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec---C---CCeEEEEeeCCceEEEeC-CCcEEEeeC
Q 046871 297 YAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG---E---HPILQLALHDDNIWVATT-DSSVHRWPA 369 (764)
Q Consensus 297 l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~---~~V~~l~~spd~l~~~s~-dg~I~iwd~ 369 (764)
+.... .=+.++ ++++.|+.+..++.|.++|..+.+.+..+.. . ..++.+.+....+++... ++.|.+.|.
T Consensus 123 i~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 123 FNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp EECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECT
T ss_pred EECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEEC
Confidence 98533 223444 5677777777688999999999888776653 2 234567787433888774 789999999
Q ss_pred CCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeC
Q 046871 370 EGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDA 438 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~ 438 (764)
.+++....+.-..-. .......+.......++++|+++.|...+.
T Consensus 200 ~tG~V~~~Id~~~L~------------------------~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 200 ETGKVTGIIDLNGIL------------------------AEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTCBEEEEEECTTGG------------------------GGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEEECCcCc------------------------cccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999887776522100 000000112334678999998777766553
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=3.9e-05 Score=79.99 Aligned_cols=234 Identities=8% Similarity=0.012 Sum_probs=139.4
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec--------------------ccccceeEEEEeC-C
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE--------------------SHVDWVNDAVLVG-D 95 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~--------------------~h~~~V~~v~~s~-d 95 (764)
.-.++++ ++++++++++..++.|..||..++. ...+. .....+..+++.+ +
T Consensus 20 ~p~~i~~-----d~~g~~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 20 APNSFTF-----DSTNKGFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp CCCCEEC-----CTTCSSEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CceEEEE-----cCCCCEEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 4567777 6888888888889999999887532 22221 0123578899997 7
Q ss_pred CeEEEEeCCCcEEEecCCCCCeeeeeccc-----cCCceEEEEEecC-CCcEEEEEeC-----------------CCeEE
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLRQ-----HSDYVTCLAAAEK-NSNIVASGGL-----------------GAEVF 152 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~-----h~~~V~~l~~~p~-~~~~lasg~~-----------------dg~I~ 152 (764)
+.|+.+...+.|..+|.. .+. +..+.. .......+++. + ++++.++-.. ++.|.
T Consensus 92 g~l~v~d~~~~i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 92 NQLYIVDCYYHLSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp TEEEEEETTTEEEEECTT-CEE-CEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred CcEEEEECCCCEEEEeCC-CCE-EEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 777777666668888852 232 222211 11345677777 4 5555554322 13344
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
.||..++. . ............++++++|+.|
T Consensus 169 ~~d~~~~~------------------------------------------------~-~~~~~~~~~p~gia~~~dg~~l 199 (322)
T 2fp8_A 169 KYDPSTKE------------------------------------------------T-TLLLKELHVPGGAEVSADSSFV 199 (322)
T ss_dssp EEETTTTE------------------------------------------------E-EEEEEEESCCCEEEECTTSSEE
T ss_pred EEeCCCCE------------------------------------------------E-EEeccCCccCcceEECCCCCEE
Confidence 44443210 0 0000011223568999999866
Q ss_pred EEE-eCCCeEEEEeCCCCc--eeEEeccCCcCeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeeeEEEee
Q 046871 233 VSG-GTEKVVRVWDPRTGS--KTIKLRGHTDNIRSLLLDSTGRYCLSGSS----------DSMIRLWDLGQQRCIHSYAV 299 (764)
Q Consensus 233 ~sg-s~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~sgs~----------Dg~I~iwdl~~~~~~~~l~~ 299 (764)
+.+ ...+.|.+|++.... ....+....+ ...++++++|++.++... .+.|..+|. .++.+..+..
T Consensus 200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~ 277 (322)
T 2fp8_A 200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPL 277 (322)
T ss_dssp EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence 655 556899999987431 1111211223 788999999987666544 467888887 4777777764
Q ss_pred ec----CceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 300 HT----DSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 300 h~----~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
.. ..+.++++ .++.++++....+.|.++++...
T Consensus 278 ~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 278 PPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 43 34666666 35555556667788888887643
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=8.7e-05 Score=77.31 Aligned_cols=192 Identities=13% Similarity=0.059 Sum_probs=117.6
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEecc-----CCcCeEEEEEcC-CCCEEEEEeC------------
Q 046871 219 SVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRG-----HTDNIRSLLLDS-TGRYCLSGSS------------ 279 (764)
Q Consensus 219 ~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~sp-dg~~l~sgs~------------ 279 (764)
.+.++++.+ +++ |+.+...+.|..+|..+++. ..+.. .......+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 478899997 555 55555556688999776532 22211 113468899999 9987666432
Q ss_pred -----CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCC---eEEEEeecCCCeEEEEe
Q 046871 280 -----DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG-GRDLSLYLTDLATR---ESLLLCTGEHPILQLAL 350 (764)
Q Consensus 280 -----Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~~~---~~~~~~~~~~~V~~l~~ 350 (764)
++.|..||..+++...... .-.....|+++|++++|+.+ ...+.|.++++... .......... ...+++
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR 236 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence 3678899987776433222 22345689999999876655 55689999998752 2111112223 778999
Q ss_pred eCCc-eEEEeCC-----------CcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCC
Q 046871 351 HDDN-IWVATTD-----------SSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGI 418 (764)
Q Consensus 351 spd~-l~~~s~d-----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~ 418 (764)
.+++ +|++... +.|.+++.. ++....+...... . .
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-----------------------------~---~ 283 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-----------------------------A---G 283 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-----------------------------T---T
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-----------------------------c---c
Confidence 9998 8877654 457777654 3333333211000 0 1
Q ss_pred CCceEeEEecCCcEEEEeeCCCcEEEEEcc
Q 046871 419 PGIVQHEILNNRRHVLTKDAAGSVKLWEIT 448 (764)
Q Consensus 419 ~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~ 448 (764)
..+..+++ .+++..++....+.|..+++.
T Consensus 284 ~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 284 EHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp SCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 12333444 467777777778889999875
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.43 E-value=5.1e-06 Score=91.77 Aligned_cols=196 Identities=10% Similarity=-0.010 Sum_probs=136.4
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceeEEecc-CCcCeEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 046871 228 SGNLLVSGGT-EKVVRVWDPRTGSKTIKLRG-HTDNIRSLLL-D-STGRYCLSGS------------------SDSMIRL 285 (764)
Q Consensus 228 ~g~~l~sgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~-s-pdg~~l~sgs------------------~Dg~I~i 285 (764)
||++++.... ++.|.+.|+.+.++...+.- .......+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7887776654 56799999999988774432 2345788887 5 9999998885 2457999
Q ss_pred EeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCC--------------------------------------cEEE
Q 046871 286 WDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDL--------------------------------------SLYL 327 (764)
Q Consensus 286 wdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg--------------------------------------~I~i 327 (764)
.|..+.+.+.++.... ....++++|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999999888887433 456778999999999877543 4777
Q ss_pred EeCCC--CeE-EEEeecCCCeEEEEeeCCc--eEEEe-CCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCC
Q 046871 328 TDLAT--RES-LLLCTGEHPILQLALHDDN--IWVAT-TDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGS 401 (764)
Q Consensus 328 wd~~~--~~~-~~~~~~~~~V~~l~~spd~--l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 401 (764)
.|.++ +.. +..+.......++.++||| +++++ .+..|.++|+.+.+.. +.+. +.
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~--~~~~-------l~----------- 318 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYEN-------AD----------- 318 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSC-------CC-----------
T ss_pred EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc--cccc-------cC-----------
Confidence 77776 444 5556555667889999999 44443 5789999999853211 0000 00
Q ss_pred CCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccc
Q 046871 402 TPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITR 449 (764)
Q Consensus 402 ~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~t 449 (764)
........++-..+...++|++||...++.--|++|.+||+.+
T Consensus 319 -----~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 319 -----PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -----GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -----cccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 0000011223345677889999995556777899999999987
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=4.2e-05 Score=75.71 Aligned_cols=186 Identities=13% Similarity=0.075 Sum_probs=127.6
Q ss_pred eeeeccccC--CceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCC
Q 046871 118 CIRTLRQHS--DYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195 (764)
Q Consensus 118 ~~~~l~~h~--~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (764)
.+.++ .|. .....+.|+ ++.++.+.+.+|.|+++|+.+++.....
T Consensus 45 Vv~~~-phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------------------------------ 91 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME------------------------------ 91 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE------------------------------
T ss_pred EEEEE-cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE------------------------------
Confidence 34444 344 345788887 4678888889999999999886432110
Q ss_pred CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEE
Q 046871 196 NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCL 275 (764)
Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 275 (764)
+.. ..---.+++.. +.+.+..-.++.+.+||..+.+.+.++..... -..++ +|++.|+
T Consensus 92 -----------------l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~ 149 (268)
T 3nok_A 92 -----------------RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLV 149 (268)
T ss_dssp -----------------ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEE
T ss_pred -----------------CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEE
Confidence 110 10112344432 34444555688999999999999998874322 23344 5688888
Q ss_pred EEeCCCcEEEEeCCCCeeeEEEeeec-----CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC--------
Q 046871 276 SGSSDSMIRLWDLGQQRCIHSYAVHT-----DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE-------- 342 (764)
Q Consensus 276 sgs~Dg~I~iwdl~~~~~~~~l~~h~-----~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-------- 342 (764)
.+..+++|.++|..+.+.+.++.... ..++.+.|. +|+.++..-.+..|.+.|..+++.+..+...
T Consensus 150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~ 228 (268)
T 3nok_A 150 RSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG 228 (268)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred EECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence 88779999999999999888876433 235677777 6765555556889999999999988776531
Q ss_pred ------CCeEEEEeeCCc--eEEEe
Q 046871 343 ------HPILQLALHDDN--IWVAT 359 (764)
Q Consensus 343 ------~~V~~l~~spd~--l~~~s 359 (764)
.-.+.|+++|++ |++.+
T Consensus 229 ~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 229 QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEeC
Confidence 246899999987 66554
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.0005 Score=72.47 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=145.7
Q ss_pred eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCC
Q 046871 88 NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGD 167 (764)
Q Consensus 88 ~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~ 167 (764)
.|....++..|+.+ ....|+..++. +.....+......+..++|.+.++.++++-...+.|..+++......
T Consensus 37 ~C~~~~~~~~ll~~-~~~~I~~i~~~--g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~----- 108 (349)
T 3v64_C 37 SCKALGPEPVLLFA-NRIDIRQVLPH--RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE----- 108 (349)
T ss_dssp CEEESSSCCEEEEE-CBSCEEEECTT--SCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----
T ss_pred cccccccCceeEee-cccceEEEeCC--CCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-----
Confidence 34444444444443 34557777763 32222222233457899999655666666667788999988753100
Q ss_pred CCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 046871 168 AMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDP 246 (764)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~ 246 (764)
............+++.+.+ ++.++-...+.|.+.++
T Consensus 109 -------------------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 109 -------------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp -------------------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred -------------------------------------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 0011112234678888744 44555566789999998
Q ss_pred CCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCeeeEEE-eeecCceEEEEEcCCCCEEEEe-cCC
Q 046871 247 RTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SD-SMIRLWDLGQQRCIHSY-AVHTDSVWALASTPTFSHVYSG-GRD 322 (764)
Q Consensus 247 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~D-g~I~iwdl~~~~~~~~l-~~h~~~V~~l~~spd~~~l~sg-s~D 322 (764)
........+...-.....|+++|.+..|+... .. +.|..+++... ....+ ...-.....|+++|++..|+.+ ...
T Consensus 146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence 75443333333445678999999666655444 34 77888887543 33333 2223457899999877777655 456
Q ss_pred CcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCceEEEe-CCCcEEEeeCCCCCCceeeec
Q 046871 323 LSLYLTDLATRESLLLCT-GEHPILQLALHDDNIWVAT-TDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 323 g~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~l~~~s-~dg~I~iwd~~~~~~~~~~~~ 380 (764)
+.|..+|+.......... .......+++..+.++.+. ..+.|..++..+++....+..
T Consensus 225 ~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 225 HVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 789999987544333332 2345677888666655555 567899998777776666653
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.39 E-value=0.00039 Score=74.46 Aligned_cols=242 Identities=10% Similarity=0.009 Sum_probs=147.0
Q ss_pred eEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCC
Q 046871 88 NDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGD 167 (764)
Q Consensus 88 ~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~ 167 (764)
.|.+..++..|+.+ ....|+..++.. ... ..+......+..++|.+.++.++++-...+.|..+++......
T Consensus 80 ~C~~~~~~~~l~~~-~~~~I~~i~~~~-~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~----- 151 (386)
T 3v65_B 80 SCKALGPEPVLLFA-NRIDIRQVLPHR-SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE----- 151 (386)
T ss_dssp CEEECSSCCEEEEE-CBSCEEEECTTS-CCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-----
T ss_pred eECCccccceeEee-cCccceeeccCC-CcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-----
Confidence 34444444444444 346688888632 222 2222233457899999556666666667788999998753100
Q ss_pred CCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 046871 168 AMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDP 246 (764)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~ 246 (764)
............+++.+.+ .+.++-...+.|.+.++
T Consensus 152 -------------------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 152 -------------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp -------------------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred -------------------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 0011111234567888744 44455556778999998
Q ss_pred CCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEe-cCCC
Q 046871 247 RTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS-D-SMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSG-GRDL 323 (764)
Q Consensus 247 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~-D-g~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sg-s~Dg 323 (764)
........+...-.....|+++|.+.+|+.+.. . +.|..+++............-.....|+++|++..|+.+ +..+
T Consensus 189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 654433334434456789999997776665543 3 678888885433222222233457899999877777655 4567
Q ss_pred cEEEEeCCCCeEEEEee-cCCCeEEEEeeCCceEE-EeCCCcEEEeeCCCCCCceeeec
Q 046871 324 SLYLTDLATRESLLLCT-GEHPILQLALHDDNIWV-ATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 324 ~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~l~~-~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.|..+|+.......... .......+++..+.++. ....+.|..++..+++....+..
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 269 VIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 89999987544333333 23456788886666544 44578899999777777766653
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=0.0001 Score=72.35 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=112.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEeccCCcC-eEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCee
Q 046871 218 ESVYALAMNDSGNLLVSGGTE--KVVRVWDPRTGSKTIKLRGHTDN-IRSLLLDSTGRYCLS-GSSDSMIRLWDLGQQRC 293 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s-gs~Dg~I~iwdl~~~~~ 293 (764)
.-...+.|++ +.++.+.+.+ +.|+.+|+.+++.+..+...... -..+++. ++.|+. .-.++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 3466899986 5556666665 48999999999998887643221 1234443 455444 44688999999999999
Q ss_pred eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC------CCeEEEEeeCCceEEEeC-CCcEEE
Q 046871 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE------HPILQLALHDDNIWVATT-DSSVHR 366 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~------~~V~~l~~spd~l~~~s~-dg~I~i 366 (764)
+.++.... .-+.++ +++..|+.+..++.|.++|..+.+.+..+... ..++.+.+....+++... +..|.+
T Consensus 98 ~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 98 RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIAR 174 (243)
T ss_dssp EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEE
T ss_pred EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEE
Confidence 99998543 335555 45677776677899999999999887766532 345677777444887774 779999
Q ss_pred eeCCCCCCceeee
Q 046871 367 WPAEGRNPQKVFQ 379 (764)
Q Consensus 367 wd~~~~~~~~~~~ 379 (764)
.|..+++....+.
T Consensus 175 IDp~tG~V~~~id 187 (243)
T 3mbr_X 175 IDPASGKVVAWID 187 (243)
T ss_dssp ECTTTCBEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 9999998877765
No 262
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.36 E-value=0.0011 Score=69.18 Aligned_cols=268 Identities=10% Similarity=0.058 Sum_probs=149.3
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCC-CCcccee-ecccccceeEEEEeCCCeEEEEeCCCcEEEecCC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADD-VGSCSAT-FESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~-~~~~~~~-l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~ 113 (764)
..+.+|.+ .+++..++ ++.+|.|. +..+.+ ..+.+.. .......+.+|.|.+ +.++.++.++.|..-.
T Consensus 36 ~~~~~v~~-----~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~-- 105 (327)
T 2xbg_A 36 ATILDMSF-----IDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTT-- 105 (327)
T ss_dssp SCEEEEEE-----SSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEES--
T ss_pred CcEEEEEE-----CCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEEC--
Confidence 46899988 34556666 45677653 333321 1121111 112344688899986 5444456667555432
Q ss_pred CCCeeeeecc---ccCCceEEEEEecCCCcEEEEEeCCCeEE-EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 114 SDGTCIRTLR---QHSDYVTCLAAAEKNSNIVASGGLGAEVF-IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 114 ~~~~~~~~l~---~h~~~V~~l~~~p~~~~~lasg~~dg~I~-iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
..++.-..+. .+.+.+..+.+. .++..++.+ .++.|. -.|- +.
T Consensus 106 DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~~~-~~g~v~~S~Dg--G~----------------------------- 152 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSPRLIKAL-GNGSAEMIT-NVGAIYRTKDS--GK----------------------------- 152 (327)
T ss_dssp STTSSCEECCCCTTCSSCEEEEEEE-ETTEEEEEE-TTCCEEEESST--TS-----------------------------
T ss_pred CCCCCceECccccCCCCCeEEEEEE-CCCCEEEEe-CCccEEEEcCC--CC-----------------------------
Confidence 2233322221 233456778776 445555555 345332 2221 10
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceeEEeccCCcCeEEEEE
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDP--RTGSKTIKLRGHTDNIRSLLL 267 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~--~~~~~~~~l~~h~~~V~~l~~ 267 (764)
.|. .........+..+++.+++.+++.+...+..+-+|- .+.+.+. ......+..+.+
T Consensus 153 ----------tW~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~ 212 (327)
T 2xbg_A 153 ----------NWQ--------ALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGF 212 (327)
T ss_dssp ----------SEE--------EEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEE
T ss_pred ----------CCE--------EeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEE
Confidence 000 011223456889999999888877755444455553 2333332 234567889999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee----ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee---
Q 046871 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV----HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT--- 340 (764)
Q Consensus 268 spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~----h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--- 340 (764)
.++++.++ ++.+|.+++.+...++.-..+.. +...+.++++.+++..++++. +|.| .+..+.++.-....
T Consensus 213 ~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~ 289 (327)
T 2xbg_A 213 TPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK 289 (327)
T ss_dssp CTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT
T ss_pred CCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC
Confidence 99887654 45678887764332433222221 223588999998877666654 6766 44455554333332
Q ss_pred -cCCCeEEEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 341 -GEHPILQLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 341 -~~~~V~~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
....+.++.|.+++ +++++.+|.|..++-
T Consensus 290 ~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 290 KVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 13467888887666 888889998877654
No 263
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.36 E-value=4.6e-05 Score=75.41 Aligned_cols=204 Identities=9% Similarity=0.035 Sum_probs=128.3
Q ss_pred eeEEeccCCcC--eEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeeEEEeeecCc-eEEEEEcCCCCEEEE-ecCCCc
Q 046871 251 KTIKLRGHTDN--IRSLLLDSTGRYCLSGSSDS--MIRLWDLGQQRCIHSYAVHTDS-VWALASTPTFSHVYS-GGRDLS 324 (764)
Q Consensus 251 ~~~~l~~h~~~--V~~l~~spdg~~l~sgs~Dg--~I~iwdl~~~~~~~~l~~h~~~-V~~l~~spd~~~l~s-gs~Dg~ 324 (764)
.+.++. |... ...|.|+ ++.+..+.+.+| .|+++|+.+++.+.++...... --.++. ++..|+. .-.++.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCE
Confidence 344453 4433 4788998 676666777666 8999999999999888754322 123444 3455554 446889
Q ss_pred EEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCc
Q 046871 325 LYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV 404 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 404 (764)
+.++|..+.+.+..+.....=..++...+.++++..++.|.++|..+.+....+........
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~------------------ 170 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE------------------ 170 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE------------------
T ss_pred EEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc------------------
Confidence 99999999999988876443344554433377777788899999999887776652110000
Q ss_pred ccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhhhcccccccceEEeeCc
Q 046871 405 SSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRL 484 (764)
Q Consensus 405 ~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~~~~~~~~~w~~vd~~~ 484 (764)
...+..+.+. +|+..+..-.++.|.+.|..+|+.++.+.-....+..........+++....|...
T Consensus 171 -------------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 171 -------------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp -------------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred -------------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 0112334444 77766666568899999999999999884322221111011123355555556555
Q ss_pred eeEEEE
Q 046871 485 GSLSVH 490 (764)
Q Consensus 485 g~l~v~ 490 (764)
..|.|+
T Consensus 237 ~~lfVT 242 (262)
T 3nol_A 237 HRLFVT 242 (262)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 555554
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.36 E-value=0.00038 Score=72.27 Aligned_cols=229 Identities=9% Similarity=-0.010 Sum_probs=142.4
Q ss_pred CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
...|+..++.........+......+..++|.+.++.++.+-...+.|..+++.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-------------------- 71 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-------------------- 71 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--------------------
Confidence 467888887443211222222233567899985556666676677889999887531000
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCe
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNI 262 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V 262 (764)
......-.....+++.+ .+.++++-...+.|.++++........+.......
T Consensus 72 ---------------------------~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P 124 (318)
T 3sov_A 72 ---------------------------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 124 (318)
T ss_dssp ---------------------------EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE
T ss_pred ---------------------------EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCc
Confidence 00111112355788887 44555555667899999986543333333444567
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeeEEE-eeecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCeEEEE
Q 046871 263 RSLLLDSTGRYCLSGSS--DSMIRLWDLGQQRCIHSY-AVHTDSVWALASTPTFSHVYSG-GRDLSLYLTDLATRESLLL 338 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~--Dg~I~iwdl~~~~~~~~l-~~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~~~~~~~~ 338 (764)
..|+++|.+.+|+.+.. .+.|...++.. .....+ ...-...+.|++++++..|+.+ +..+.|..+|+........
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 203 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 203 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE
Confidence 89999997666665553 57888888753 323333 2223456899999977777655 4567899999875443333
Q ss_pred ee-cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 339 CT-GEHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 339 ~~-~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.. .......+++..++ +++-...+.|..++..+++....+..
T Consensus 204 ~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 204 VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 33 23456778887777 55555678999999988877666653
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.33 E-value=0.0013 Score=70.74 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=148.3
Q ss_pred eEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCcc
Q 046871 97 TLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTG 176 (764)
Q Consensus 97 ~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 176 (764)
+|+.+. ...|+..++.. .. ...+......+..++|.+.++.++++-...+.|+.+++......
T Consensus 85 ~ll~~~-~~~I~~i~l~~-~~-~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-------------- 147 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDR-SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-------------- 147 (400)
T ss_dssp EEEEEE-TTEEEEECTTS-CS-CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------
T ss_pred eeEEec-cceeEEEccCC-cc-eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--------------
Confidence 444444 46788888743 22 22223345678899999555666666666788988888642100
Q ss_pred ccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 046871 177 INGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKL 255 (764)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l 255 (764)
................+++.+ .+++.++-...+.|.+.++........+
T Consensus 148 ------------------------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~ 197 (400)
T 3p5b_L 148 ------------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 197 (400)
T ss_dssp ------------------------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE
T ss_pred ------------------------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE
Confidence 000011122234567899987 4555556666789999998765544444
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCC
Q 046871 256 RGHTDNIRSLLLDSTGRYCLSGSS--DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLAT 332 (764)
Q Consensus 256 ~~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~ 332 (764)
...-...+.|+++|.+.+|+.... .+.|...++........+...-.....|++++++..|+.+. ..+.|..+|+..
T Consensus 198 ~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 198 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 434456899999997766665542 36898888854333222232335678999998887777664 467899999876
Q ss_pred CeEEEEeec---CCCeEEEEeeCCc-eEEEeCCCcEEEeeCCCCCCceeeec
Q 046871 333 RESLLLCTG---EHPILQLALHDDN-IWVATTDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 333 ~~~~~~~~~---~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~~~~~~~~~~ 380 (764)
......... -.....+++..+. +|+....+.|..++..+++....+..
T Consensus 278 ~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 278 GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp CCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred CccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 544443332 2345678887766 55555678899999878877766653
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.33 E-value=0.0012 Score=68.50 Aligned_cols=229 Identities=11% Similarity=0.043 Sum_probs=138.8
Q ss_pred CCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCC
Q 046871 104 DTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNS 183 (764)
Q Consensus 104 Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (764)
...|+..++.. ......+. ....+..++|.+.++.++++-...+.|..+++.+.....
T Consensus 9 ~~~I~~i~~~~-~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~-------------------- 66 (316)
T 1ijq_A 9 RHEVRKMTLDR-SEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------------------- 66 (316)
T ss_dssp BSSEEEEETTS-CCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------
T ss_pred CCeEEEEECCC-cceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc--------------------
Confidence 35688888743 33333332 345678999995555666666667899999987520000
Q ss_pred CcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeccCCcCe
Q 046871 184 LPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSG-NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNI 262 (764)
Q Consensus 184 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V 262 (764)
.........-.....+++.+.+ ++.++-...+.|.++|+........+.......
T Consensus 67 ------------------------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P 122 (316)
T 1ijq_A 67 ------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122 (316)
T ss_dssp -------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred ------------------------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCc
Confidence 0000011111234678888644 444555677899999987543333333334567
Q ss_pred EEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeeEEEe-eecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCCCeEEEE
Q 046871 263 RSLLLDSTGRYCLSGSSD--SMIRLWDLGQQRCIHSYA-VHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLATRESLLL 338 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~D--g~I~iwdl~~~~~~~~l~-~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~~~~~~ 338 (764)
..++++|.+..|+.+... +.|..+++. +.....+. ..-.....|++++++..|+.+. ..+.|..+|+........
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 899999977766555443 688888874 33333332 2234578999999877776554 567899999975433333
Q ss_pred eec---CCCeEEEEeeCCceEEE-eCCCcEEEeeCCCCCCceeee
Q 046871 339 CTG---EHPILQLALHDDNIWVA-TTDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 339 ~~~---~~~V~~l~~spd~l~~~-s~dg~I~iwd~~~~~~~~~~~ 379 (764)
... ......+++..+.++.+ ...+.|..++..+++....+.
T Consensus 202 ~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 322 23456788876555444 456789999987777666664
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=4.8e-05 Score=75.27 Aligned_cols=190 Identities=12% Similarity=-0.007 Sum_probs=125.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCce--EEEEEcCCCCEEE-EecCCCcEEEEeCCCCeEEE
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSV--WALASTPTFSHVY-SGGRDLSLYLTDLATRESLL 337 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V--~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~~~ 337 (764)
....|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ ... .. -.+++. ++.|+ ..-.++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 34788887 3566677778889999999999998887 333 33 335554 34444 45568999999999999998
Q ss_pred EeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccC
Q 046871 338 LCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPG 417 (764)
Q Consensus 338 ~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g 417 (764)
.+.....-..++.....|+++..++.|.++|..+.+....+........
T Consensus 131 ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~------------------------------- 179 (268)
T 3nok_A 131 TTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP------------------------------- 179 (268)
T ss_dssp EEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE-------------------------------
T ss_pred EEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc-------------------------------
Confidence 8886544456665544488888899999999999887776652111000
Q ss_pred CCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhh----hcccccccceEEeeCceeEEEE
Q 046871 418 IPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEEL----FEMVSIPAWFTVDTRLGSLSVH 490 (764)
Q Consensus 418 ~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~----~~~~~~~~w~~vd~~~g~l~v~ 490 (764)
...+..+.+. +|+..+..-.++.|.+.|..+|+.++.+. +.+..+.. .....+++....|.....|.|+
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id---l~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVID---ASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE---CHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE---CCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 1112344444 77666666568899999999999999883 33222221 1123355555555555555554
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.22 E-value=0.0015 Score=68.80 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=142.6
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEE-EEeCCCcEEEecC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLV-SCSSDTTLKTWNC 112 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~-s~s~Dg~V~vWd~ 112 (764)
....+|.+. .++ .+|+.+.. ..|+..++... ... .+......+..++|.+. +.|+ +-...+.|..+++
T Consensus 33 ~d~~~C~~~-----~~~-~~ll~~~~-~~I~~i~~~g~--~~~-~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~ 102 (349)
T 3v64_C 33 PDRRSCKAL-----GPE-PVLLFANR-IDIRQVLPHRS--EYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL 102 (349)
T ss_dssp TTSSCEEES-----SSC-CEEEEECB-SCEEEECTTSC--CEE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCccccc-----ccC-ceeEeecc-cceEEEeCCCC--eeE-EeecCCCceEEEEEeccccEEEEEeccCCceEEEec
Confidence 345677776 343 44544433 46888888752 222 22223345788999965 5554 4456788988986
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeec
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTI 192 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (764)
.. ......+.........+++.+.+++++++-...+.|.+.+++....
T Consensus 103 ~g-~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------------------------- 150 (349)
T 3v64_C 103 NG-SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------------------------- 150 (349)
T ss_dssp TS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------------------
T ss_pred CC-CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-------------------------------
Confidence 43 2222222222344568888854666667767778899998864210
Q ss_pred CCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEE-eCC-CeEEEEeCCCCceeEEe-ccCCcCeEEEEEcC
Q 046871 193 GSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSG-GTE-KVVRVWDPRTGSKTIKL-RGHTDNIRSLLLDS 269 (764)
Q Consensus 193 ~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-s~d-g~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp 269 (764)
.......-.....++++|.+..|+.. ... +.|..+++... ....+ ...-...+.|++++
T Consensus 151 -----------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~ 212 (349)
T 3v64_C 151 -----------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDY 212 (349)
T ss_dssp -----------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEET
T ss_pred -----------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeC
Confidence 00111223446889999865555544 444 78988887643 33333 22334578999998
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe
Q 046871 270 TGRYCLSGS-SDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC 339 (764)
Q Consensus 270 dg~~l~sgs-~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 339 (764)
++..|+.+. ..+.|..+|+........+.........|++. .+..+++-...+.|..++..+++....+
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 777666554 46789999986433222233333456677773 3444455556677887775555544433
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.21 E-value=0.00031 Score=68.85 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=128.4
Q ss_pred eeEEeccCCc--CeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeeEEEeeecCc-eEEEEEcCCCCEEE-EecCCCc
Q 046871 251 KTIKLRGHTD--NIRSLLLDSTGRYCLSGSSD--SMIRLWDLGQQRCIHSYAVHTDS-VWALASTPTFSHVY-SGGRDLS 324 (764)
Q Consensus 251 ~~~~l~~h~~--~V~~l~~spdg~~l~sgs~D--g~I~iwdl~~~~~~~~l~~h~~~-V~~l~~spd~~~l~-sgs~Dg~ 324 (764)
.+.++ .|.. ....+.|++ +.+..+.+.+ ..|+.+|+.+++.+..+...... --.+++. +..|+ ..-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 34444 3543 467899986 5555565554 48999999999999888654332 1234443 44454 5557899
Q ss_pred EEEEeCCCCeEEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccccccCCCCCc
Q 046871 325 LYLTDLATRESLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV 404 (764)
Q Consensus 325 I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 404 (764)
+.++|..+.+.+..+.....-..++.....|+++..++.|.++|..+.+..+.+........
T Consensus 87 v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~------------------ 148 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP------------------ 148 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE------------------
T ss_pred EEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc------------------
Confidence 99999999999998886544456654443388888889999999999887777653211000
Q ss_pred ccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecCCCchhhhhhhh-hcccccccceEEeeC
Q 046871 405 SSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYGKASFEEKKEEL-FEMVSIPAWFTVDTR 483 (764)
Q Consensus 405 ~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~~~~f~~~~~~~-~~~~~~~~w~~vd~~ 483 (764)
...+..+.+. +|+..+..-.+..|.+.|..+|+.+..+.-....+..... .....+++....|..
T Consensus 149 -------------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 149 -------------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp -------------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred -------------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 0112233333 6665555556779999999999999988432222111110 112335565556666
Q ss_pred ceeEEEE
Q 046871 484 LGSLSVH 490 (764)
Q Consensus 484 ~g~l~v~ 490 (764)
...|.|+
T Consensus 215 ~~~lfVT 221 (243)
T 3mbr_X 215 HDRLFVT 221 (243)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 6666554
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.18 E-value=0.0019 Score=69.03 Aligned_cols=244 Identities=10% Similarity=-0.001 Sum_probs=142.7
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEE-EEeCCCcEEEecCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLV-SCSSDTTLKTWNCSS 114 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~-s~s~Dg~V~vWd~~~ 114 (764)
+-+|.+. .+ ..+|+.+.. ..|+..++... .. ..+......+..++|.+. +.|+ +-...+.|..+++..
T Consensus 78 ~~~C~~~-----~~-~~~l~~~~~-~~I~~i~~~~~--~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 78 RRSCKAL-----GP-EPVLLFANR-IDIRQVLPHRS--EY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp SSCEEEC-----SS-CCEEEEECB-SCEEEECTTSC--CC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeECCc-----cc-cceeEeecC-ccceeeccCCC--cE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 4455555 23 344554443 57888888763 22 222233445788999965 5554 445677898898633
Q ss_pred CCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCC
Q 046871 115 DGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGS 194 (764)
Q Consensus 115 ~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (764)
......+.........+++.+.++.++++-...+.|.+.+++....
T Consensus 148 -~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--------------------------------- 193 (386)
T 3v65_B 148 -SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--------------------------------- 193 (386)
T ss_dssp -CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---------------------------------
T ss_pred -CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---------------------------------
Confidence 2222222222334567888854566666666677888877764210
Q ss_pred CCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCC
Q 046871 195 SNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGG-TE-KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGR 272 (764)
Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs-~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 272 (764)
.............+++.|.+..|+... .. +.|..+++............-...+.|+++|++.
T Consensus 194 ---------------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~ 258 (386)
T 3v65_B 194 ---------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR 258 (386)
T ss_dssp ---------------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT
T ss_pred ---------------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC
Confidence 001112224568899998666555544 34 6888888764433333333344578999998777
Q ss_pred EEEEE-eCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee
Q 046871 273 YCLSG-SSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 273 ~l~sg-s~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 340 (764)
.|+.+ +..+.|..+|+........+.........|++. .+..+++-...+.|..++..+++.+..+.
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 66655 446789999986433333333333456777773 34455566667788888866665544443
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.004 Score=64.80 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=86.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeE-EEEeCCCCceeE-EeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCee
Q 046871 218 ESVYALAMNDSGNLLVSGGTEKVV-RVWDPRTGSKTI-KLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL--GQQRC 293 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~dg~I-~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl--~~~~~ 293 (764)
..++.+.+.+++..++++ .++.| +-.| .|+.-. ....+...+..+.+.+++.+++++...+..+-+|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE
Confidence 346677776666666655 45544 3223 233222 22345567899999999988877654444444443 23333
Q ss_pred eEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-----cCCCeEEEEeeCCc-eEEEeCCCcEEEe
Q 046871 294 IHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-----GEHPILQLALHDDN-IWVATTDSSVHRW 367 (764)
Q Consensus 294 ~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~~l~~spd~-l~~~s~dg~I~iw 367 (764)
+. ......+..+++.+++..++ ++.+|.+++.+...++.-..+. ....+.++.+.+++ +++++.++.| .+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~ 274 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LC 274 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EE
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EE
Confidence 32 23455788999999887554 4557888776533344332222 12358889998877 7777777776 33
Q ss_pred eCCCC
Q 046871 368 PAEGR 372 (764)
Q Consensus 368 d~~~~ 372 (764)
..+.+
T Consensus 275 S~DgG 279 (327)
T 2xbg_A 275 SQDGG 279 (327)
T ss_dssp ESSTT
T ss_pred eCCCC
Confidence 44433
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.18 E-value=0.0008 Score=66.84 Aligned_cols=200 Identities=9% Similarity=0.074 Sum_probs=129.6
Q ss_pred eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccc
Q 046871 121 TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISA 200 (764)
Q Consensus 121 ~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 200 (764)
.+.+-.+.+..++|.|.++.++++...++.|...|.. +.....
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~------------------------------------ 63 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT------------------------------------ 63 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE------------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE------------------------------------
Confidence 4555566799999996556677778888889988886 211100
Q ss_pred cccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEec------cCCcCeEEEEEcCCC
Q 046871 201 HTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSK---TIKLR------GHTDNIRSLLLDSTG 271 (764)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~---~~~l~------~h~~~V~~l~~spdg 271 (764)
..+ .-....-.|++.+++.++++.-.++.+.++++..... +.... ........|+|+|++
T Consensus 64 ----------i~l-~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~ 132 (255)
T 3qqz_A 64 ----------IPL-DFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD 132 (255)
T ss_dssp ----------EEC-SSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT
T ss_pred ----------Eec-CCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC
Confidence 001 1124567888888887767766678888888755432 12221 133456899999999
Q ss_pred CEEEEEeCCCcEEEEeCC---CCeeeEEEee-------ecCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCeEEEEee
Q 046871 272 RYCLSGSSDSMIRLWDLG---QQRCIHSYAV-------HTDSVWALASTPTFS-HVYSGGRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 272 ~~l~sgs~Dg~I~iwdl~---~~~~~~~l~~-------h~~~V~~l~~spd~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~ 340 (764)
+.|+++.......+|.+. ....+..+.. +...+.+++++|... +++....+..+.++|... +.+..+.
T Consensus 133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~ 211 (255)
T 3qqz_A 133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMS 211 (255)
T ss_dssp TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEE
T ss_pred CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEE
Confidence 888877766555555543 1122222211 223568999998654 455666678899999764 4554444
Q ss_pred cC----------CCeEEEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 341 GE----------HPILQLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 341 ~~----------~~V~~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
-. ...-.|+|.++| +++.++.+.++++.-
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred cCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 22 246899999999 999999887777754
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.15 E-value=0.0066 Score=62.76 Aligned_cols=231 Identities=12% Similarity=0.029 Sum_probs=136.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEE-EEeCCCcEEEecCCCC---CeeeeeccccCCc
Q 046871 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLV-SCSSDTTLKTWNCSSD---GTCIRTLRQHSDY 128 (764)
Q Consensus 54 ~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~-s~s~Dg~V~vWd~~~~---~~~~~~l~~h~~~ 128 (764)
+|+.+.. ..|+..|+.... ....+. ....+..++|.+. +.|+ +-...+.|..+++... ......+...-..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECB-SSEEEEETTSCC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECC-CeEEEEECCCcc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 3444443 468888988732 233332 3455778999975 5544 5455688999987431 1111222222245
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
...+++.+.+++++++-...+.|.+.|+.....
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------------------------- 111 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----------------------------------------------- 111 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-----------------------------------------------
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-----------------------------------------------
Confidence 578888744566666666778899998764210
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCceeEEe-ccCCcCeEEEEEcCCCCEEEEEe-CCCcEE
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGT-E-KVVRVWDPRTGSKTIKL-RGHTDNIRSLLLDSTGRYCLSGS-SDSMIR 284 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~-d-g~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~ 284 (764)
.............+++.|.+..|+.+.. . +.|...++. |+....+ ...-...+.|++++++..|+.+. ..+.|.
T Consensus 112 -~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 112 -KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp -EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred -EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 0001112235678999986665555443 2 688888875 4333333 22334678999999877766554 457899
Q ss_pred EEeCCCCeeeEEEee---ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe
Q 046871 285 LWDLGQQRCIHSYAV---HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC 339 (764)
Q Consensus 285 iwdl~~~~~~~~l~~---h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 339 (764)
.+|+.. .....+.. .-.....|++. .+..+++-...+.|..++..+++.+..+
T Consensus 190 ~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 190 SIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 999864 33333322 12345677775 3455556666788988888776654444
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=0.00031 Score=81.03 Aligned_cols=272 Identities=11% Similarity=0.090 Sum_probs=142.6
Q ss_pred C-CCcEEEEEeCCC-----------cEEEEeCCCCCCccceeecc-cccceeEEEEeCCC-eEEEEeC-CCcEEEecCCC
Q 046871 50 N-GVDYLFTGSRDG-----------TLKRWSLADDVGSCSATFES-HVDWVNDAVLVGDN-TLVSCSS-DTTLKTWNCSS 114 (764)
Q Consensus 50 ~-d~~~L~sgs~Dg-----------~I~iWd~~~~~~~~~~~l~~-h~~~V~~v~~s~d~-~l~s~s~-Dg~V~vWd~~~ 114 (764)
+ ++++++.||.+. .+.+||..+++...+..+.. +.....++++..++ .++.|+. +..+.+||...
T Consensus 195 ~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t 274 (656)
T 1k3i_A 195 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS 274 (656)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred ecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcC
Confidence 5 788888887643 58899998876655555432 33344456777776 5666663 56899999743
Q ss_pred CCeee--eeccccCCceEEEEEecCCCcEEEEEe-CC-----CeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 115 DGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGG-LG-----AEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 115 ~~~~~--~~l~~h~~~V~~l~~~p~~~~~lasg~-~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
.+-. ..+...... .+++.. +++++++.|+ .+ ..+.+||..+..-........ ....
T Consensus 275 -~~W~~~~~~~~~R~~-~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~-----~p~~-------- 338 (656)
T 1k3i_A 275 -DSWIPGPDMQVARGY-QSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV-----NPML-------- 338 (656)
T ss_dssp -TEEEECCCCSSCCSS-CEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS-----GGGC--------
T ss_pred -CceeECCCCCccccc-cceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc-----cccc--------
Confidence 2221 122211122 234444 4788888888 34 468899987632110000000 0000
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-------
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT------- 259 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~------- 259 (764)
.... .....+...++.+... +|..+.. +....+..||..+.........+.
T Consensus 339 ------------------~~~~--~~~~~~~~~iyv~Gg~-~g~~~~~-~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 339 ------------------TADK--QGLYRSDNHAWLFGWK-KGSVFQA-GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp ------------------CCCT--TGGGTTTCSCCEEECG-GGCEEEC-CSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred ------------------cccc--cceeecCCceEEEECC-CCcEEEe-cCccceeeeecCCcceeecCCccccccccCC
Confidence 0000 0000111222222211 2222222 234568889988775433322111
Q ss_pred --cCeEEEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCeeeEEE--eeecCce-EEEEEcCCCCEEEEecCC
Q 046871 260 --DNIRSLLLDS-TGRYCLSGSSDS-----------MIRLWDLGQQRCIHSY--AVHTDSV-WALASTPTFSHVYSGGRD 322 (764)
Q Consensus 260 --~~V~~l~~sp-dg~~l~sgs~Dg-----------~I~iwdl~~~~~~~~l--~~h~~~V-~~l~~spd~~~l~sgs~D 322 (764)
..-.++.|.. +++.++.|+.++ .|.+||..+..-.... ..+.... .+++..|++++++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 1234455543 677788887543 6888888776544333 2233332 345667899999999864
Q ss_pred -----------CcEEEEeCCCCeEEEEeec---CCCeEEEEeeCCc--eEEEe
Q 046871 323 -----------LSLYLTDLATRESLLLCTG---EHPILQLALHDDN--IWVAT 359 (764)
Q Consensus 323 -----------g~I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~--l~~~s 359 (764)
..+.+||..+.+-...-.. .....+..+.+++ ++.|+
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence 4689999877653332211 1122344556777 44444
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.14 E-value=0.0014 Score=67.49 Aligned_cols=223 Identities=11% Similarity=0.041 Sum_probs=129.7
Q ss_pred cceeEEEEeCCCeEE-EEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC-C-eEEEEeCCCCCC
Q 046871 85 DWVNDAVLVGDNTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG-A-EVFIWDIEAALA 161 (764)
Q Consensus 85 ~~V~~v~~s~d~~l~-s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d-g-~I~iwdl~~~~~ 161 (764)
.....++|.+++.|+ +-..++.|..||.. +.....+. ....+..+++. ++++++++.... + .|..+|..++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~--g~~~~~~~-~~~~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQIHAT-VEGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEEE-CSSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCC--CceEEEEe-CCCCceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 457789999987554 44477899999863 33332222 23568899999 667766555332 2 466666554311
Q ss_pred CCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 046871 162 PSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVV 241 (764)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I 241 (764)
.. .... ........++..+++..+++-..++.|
T Consensus 108 ~~----------------------------------------------~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i 140 (306)
T 2p4o_A 108 ET----------------------------------------------LLTL-PDAIFLNGITPLSDTQYLTADSYRGAI 140 (306)
T ss_dssp EE----------------------------------------------EEEC-TTCSCEEEEEESSSSEEEEEETTTTEE
T ss_pred EE----------------------------------------------EEeC-CCccccCcccccCCCcEEEEECCCCeE
Confidence 00 0000 001112344444555445555468899
Q ss_pred EEEeCCCCce-eEEec---------cCCcCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC-Cee--eEEEeeecCceEEE
Q 046871 242 RVWDPRTGSK-TIKLR---------GHTDNIRSLLLDSTGRYCLSG-SSDSMIRLWDLGQ-QRC--IHSYAVHTDSVWAL 307 (764)
Q Consensus 242 ~iwd~~~~~~-~~~l~---------~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwdl~~-~~~--~~~l~~h~~~V~~l 307 (764)
.++|..+++. +.... ..-.....| ++++++|+.+ +..+.|..|++.. ++. ...+. .......+
T Consensus 141 ~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi 217 (306)
T 2p4o_A 141 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDF 217 (306)
T ss_dssp EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSE
T ss_pred EEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCe
Confidence 9999876531 21110 111234555 7888776555 4567899999864 321 12221 11345678
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCCeEEEE--eecC-CCeEEEEee---CCc--eEEEeCCC
Q 046871 308 ASTPTFSHVYSGGRDLSLYLTDLATRESLLL--CTGE-HPILQLALH---DDN--IWVATTDS 362 (764)
Q Consensus 308 ~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~-~~V~~l~~s---pd~--l~~~s~dg 362 (764)
+++++|+++++....+.|.++|.. ++.... +... ...++++|. +++ |++++..+
T Consensus 218 ~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 218 AFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 999999877777778899999975 554322 2222 558899998 675 77766543
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.13 E-value=0.00093 Score=68.89 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=131.8
Q ss_pred CCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeC--CC-cEEEecC
Q 046871 36 AGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSS--DT-TLKTWNC 112 (764)
Q Consensus 36 ~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~--Dg-~V~vWd~ 112 (764)
.....+++ +++++++++-..++.|..||.+.. ....+. ....+..+++.+++.|+.+.. ++ .|..++.
T Consensus 32 ~~pegia~-----~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLAS-----APDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEE-----CTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEE-----CCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 35778888 688887777667899999998752 222222 234688899999885555542 22 3655664
Q ss_pred CCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 113 SSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 113 ~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
.+++...... ........++.. .++..+++-..++.|..+|...+..... .
T Consensus 103 -~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~--------------------------~ 154 (306)
T 2p4o_A 103 -SDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIW--------------------------L 154 (306)
T ss_dssp -TTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEE--------------------------E
T ss_pred -CCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEE--------------------------E
Confidence 3344322111 112223445544 4454555554678888888764210000 0
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCC-Cce--eEEeccCCcCeEEEEE
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVS-GGTEKVVRVWDPRT-GSK--TIKLRGHTDNIRSLLL 267 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-gs~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~ 267 (764)
.. ..+.. . .....-.....+ +++++.|+. -...+.|..+|+.. ++. ...+. .......+++
T Consensus 155 ~~--~~~~~------~----~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~v 219 (306)
T 2p4o_A 155 EH--PMLAR------S----NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAF 219 (306)
T ss_dssp EC--GGGSC------S----STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEE
T ss_pred EC--Ccccc------c----cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEE
Confidence 00 00000 0 000011123344 677766554 45578999999864 321 11111 1134567899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeE--EEeeecCceEEEEEc---CCCCEEEEecCC
Q 046871 268 DSTGRYCLSGSSDSMIRLWDLGQQRCIH--SYAVHTDSVWALAST---PTFSHVYSGGRD 322 (764)
Q Consensus 268 spdg~~l~sgs~Dg~I~iwdl~~~~~~~--~l~~h~~~V~~l~~s---pd~~~l~sgs~D 322 (764)
+++|++.++....+.|.++|.. ++... .+.......++++|. |+++.|+.++..
T Consensus 220 d~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 9999887777778899999975 65432 232223568999998 888877765543
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00014 Score=83.82 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=123.2
Q ss_pred EEEEeC-CC-eEEEEeCCC-----------cEEEecCCCCC-eeeeecc-ccCCceEEEEEecCCCcEEEEEeC-CCeEE
Q 046871 89 DAVLVG-DN-TLVSCSSDT-----------TLKTWNCSSDG-TCIRTLR-QHSDYVTCLAAAEKNSNIVASGGL-GAEVF 152 (764)
Q Consensus 89 ~v~~s~-d~-~l~s~s~Dg-----------~V~vWd~~~~~-~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~-dg~I~ 152 (764)
.+++.+ ++ .++.|+.+. .+.+||+.... ..+..+. .+.....++++. .++.+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-CCCCEEEeCCCCCCceE
Confidence 456666 66 566666542 57889974432 1122221 122333456666 67889999984 45799
Q ss_pred EEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE
Q 046871 153 IWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL 232 (764)
Q Consensus 153 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 232 (764)
+||..+..-. .. ..+.. ...-.+++..++++++
T Consensus 269 ~yd~~t~~W~----------------------------------------~~------~~~~~-~R~~~s~~~~~dg~iy 301 (656)
T 1k3i_A 269 LYDSSSDSWI----------------------------------------PG------PDMQV-ARGYQSSATMSDGRVF 301 (656)
T ss_dssp EEEGGGTEEE----------------------------------------EC------CCCSS-CCSSCEEEECTTSCEE
T ss_pred EecCcCCcee----------------------------------------EC------CCCCc-cccccceEEecCCeEE
Confidence 9998753110 00 00100 1111244555789999
Q ss_pred EEEe-CC-----CeEEEEeCCCCceeEEe----ccCCcCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCee
Q 046871 233 VSGG-TE-----KVVRVWDPRTGSKTIKL----RGHTDNIRSLLLDSTGRYCLSGSSD---------SMIRLWDLGQQRC 293 (764)
Q Consensus 233 ~sgs-~d-----g~I~iwd~~~~~~~~~l----~~h~~~V~~l~~spdg~~l~sgs~D---------g~I~iwdl~~~~~ 293 (764)
+.|+ .+ ..+.+||+.+.+-...- ......-....+..++..++.|+.+ ..+..||..+...
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w 381 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 381 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred EEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence 9988 34 56999999876533210 0000000001122344444445444 4577889877664
Q ss_pred eEEEeeecC---------ceEEEEEc-CCCCEEEEecCCC-----------cEEEEeCCCCeEEEEe----ecCCCeEEE
Q 046871 294 IHSYAVHTD---------SVWALAST-PTFSHVYSGGRDL-----------SLYLTDLATRESLLLC----TGEHPILQL 348 (764)
Q Consensus 294 ~~~l~~h~~---------~V~~l~~s-pd~~~l~sgs~Dg-----------~I~iwd~~~~~~~~~~----~~~~~V~~l 348 (764)
......+.. .-.++.|. .++++++.|+.++ .|.+||..+..-.... .....-.++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~ 461 (656)
T 1k3i_A 382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS 461 (656)
T ss_dssp EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE
T ss_pred eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCe
Confidence 443332221 23445554 3677888887543 6788888776544332 112222344
Q ss_pred EeeCCc--eEEEeCC-----------CcEEEeeCCC
Q 046871 349 ALHDDN--IWVATTD-----------SSVHRWPAEG 371 (764)
Q Consensus 349 ~~spd~--l~~~s~d-----------g~I~iwd~~~ 371 (764)
+..+++ +++|+.+ ..+.+||..+
T Consensus 462 ~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 462 VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred EECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 566666 4555433 3456666544
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.07 E-value=0.013 Score=62.86 Aligned_cols=235 Identities=11% Similarity=-0.009 Sum_probs=141.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEE-EEeCCCcEEEecCCCCC---eeeeeccccCC
Q 046871 53 DYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLV-SCSSDTTLKTWNCSSDG---TCIRTLRQHSD 127 (764)
Q Consensus 53 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~-s~s~Dg~V~vWd~~~~~---~~~~~l~~h~~ 127 (764)
.+|+.+.. ..|+..++.... ...+......+..++|.+. +.|+ +-...+.|+.+++.... .....+.....
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~---~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCS---CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ceeEEecc-ceeEEEccCCcc---eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 35555544 578888887632 2223334566788999975 5554 44456788888863311 12222332345
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC
Q 046871 128 YVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG 207 (764)
Q Consensus 128 ~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 207 (764)
....+++.+.+++++++-...+.|.+.+++...
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~----------------------------------------------- 192 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------------------------------------------- 192 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-----------------------------------------------
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-----------------------------------------------
Confidence 677888884466666676677888888876421
Q ss_pred ccceeccCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEE
Q 046871 208 YVPIAAKGHKESVYALAMNDSGNLLVSGGT--EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIR 284 (764)
Q Consensus 208 ~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~ 284 (764)
..............|++.|.+..|+.... .+.|...++........+...-.....|++++++..|+.+. ..+.|.
T Consensus 193 -~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~ 271 (400)
T 3p5b_L 193 -RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271 (400)
T ss_dssp -EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred -eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence 00111122344689999996666665542 47899888864433333333335678999998887777664 467899
Q ss_pred EEeCCCCeeeEEEee--ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee
Q 046871 285 LWDLGQQRCIHSYAV--HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT 340 (764)
Q Consensus 285 iwdl~~~~~~~~l~~--h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 340 (764)
.+|+........... .-.....|++. .+..+++-...+.|..+|..+++.+..+.
T Consensus 272 ~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 272 SIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 999864333222222 12345577773 33444566667889888877776555544
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.99 E-value=0.0064 Score=62.90 Aligned_cols=235 Identities=11% Similarity=-0.006 Sum_probs=137.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeE-EEEeCCCcEEEecCCCCCeeeeeccccCCceEE
Q 046871 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTL-VSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTC 131 (764)
Q Consensus 54 ~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l-~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~ 131 (764)
+|+.+. ...|+..+++.........+. ....+..+.|.+. +.| ++-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344333 357999999864212222222 2345668899875 544 455567789888874332111222222345667
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccce
Q 046871 132 LAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPI 211 (764)
Q Consensus 132 l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 211 (764)
+++.+.+++++++-...+.|.+++++.... ..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------------------------------------------~~ 115 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR------------------------------------------------KV 115 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC------------------------------------------------EE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcE------------------------------------------------EE
Confidence 888854666667766778899998864210 00
Q ss_pred eccCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 046871 212 AAKGHKESVYALAMNDSGNLLVSGG--TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRLWDL 288 (764)
Q Consensus 212 ~~~~~~~~V~~l~~sp~g~~l~sgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwdl 288 (764)
...........+++.|.+..|+.+. ..+.|...++............-...+.|++++++..|+.+. ..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 0112234467899998666666554 357888888753332222222234568999999777766554 5678999998
Q ss_pred CCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe
Q 046871 289 GQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC 339 (764)
Q Consensus 289 ~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 339 (764)
........+.........+++.. +..+++-...+.|..++..+++....+
T Consensus 196 dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 196 DGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 64322222222334566777753 344556566788999998777654444
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0025 Score=69.06 Aligned_cols=233 Identities=8% Similarity=0.039 Sum_probs=134.6
Q ss_pred ceeEEEEeC--CCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeC-CC----eEEEEeCCC
Q 046871 86 WVNDAVLVG--DNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGL-GA----EVFIWDIEA 158 (764)
Q Consensus 86 ~V~~v~~s~--d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~-dg----~I~iwdl~~ 158 (764)
....++++| ++.|+.+...+.|+.+|+. .+. +..+.........++|+ +++++|+.+.. ++ .+.+.+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~-v~~~~~~~~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEY-VSTVYSGLSKVRTICWT-HEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTE-EEEEECCCSCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCE-EEEEecCCCCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 456789997 3567666665888888863 233 33333345567899999 67775555543 22 233333221
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeC
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGT 237 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~ 237 (764)
.. . .. ..+. .......++++| +|.++++-..
T Consensus 215 ~~-~--------------------------------------------~~--~~l~-~~~~p~giavdp~~g~lyv~d~~ 246 (430)
T 3tc9_A 215 GF-K--------------------------------------------VI--TELT-KGQNCNGAETHPINGELYFNSWN 246 (430)
T ss_dssp TS-C--------------------------------------------SE--EEEE-ECSSCCCEEECTTTCCEEEEETT
T ss_pred ce-e--------------------------------------------ee--eeec-cCCCceEEEEeCCCCEEEEEECC
Confidence 10 0 00 0000 112345778999 7777777777
Q ss_pred CCeEEEEeCCCCceeEEec-cCCcCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC--Cee--eEEEeee-----------
Q 046871 238 EKVVRVWDPRTGSKTIKLR-GHTDNIRSLLLDSTGRYCLSG-SSDSMIRLWDLGQ--QRC--IHSYAVH----------- 300 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwdl~~--~~~--~~~l~~h----------- 300 (764)
++.|..+|...+....... +.....+.|+|+|+|++|+.+ ...+.|..++... ++. +.++.+.
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~ 326 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVG 326 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEG
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCC
Confidence 8899999998765422222 122346789999999965544 5677899987642 222 2223221
Q ss_pred ----cCceE-EEEEc--------CCCCEEEEecCCCcEEEEeCCCCeEEEEeec---------C---------CCeEEEE
Q 046871 301 ----TDSVW-ALAST--------PTFSHVYSGGRDLSLYLTDLATRESLLLCTG---------E---------HPILQLA 349 (764)
Q Consensus 301 ----~~~V~-~l~~s--------pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---------~---------~~V~~l~ 349 (764)
-.... .++.. +++.++++=...+.|+.++ .++........ . .....++
T Consensus 327 ~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~gia 405 (430)
T 3tc9_A 327 KKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIV 405 (430)
T ss_dssp GGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEE
T ss_pred cceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEE
Confidence 01123 45553 3455555555667888888 44554433321 1 1367899
Q ss_pred eeC-Cc-eEEEeC-CCcEEEeeCC
Q 046871 350 LHD-DN-IWVATT-DSSVHRWPAE 370 (764)
Q Consensus 350 ~sp-d~-l~~~s~-dg~I~iwd~~ 370 (764)
+++ ++ |+++.. ++.|+.++++
T Consensus 406 vd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 406 YDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECCCCEEEEEECCCCeEEEEccC
Confidence 998 45 777664 5678777654
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.96 E-value=0.005 Score=61.09 Aligned_cols=159 Identities=9% Similarity=0.096 Sum_probs=106.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEecc-CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046871 213 AKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPRTGSKTIKLRG-HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 213 ~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~ 290 (764)
+.+-...+..++++|+++.|+ +...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 445556799999999766554 57778899999997 887777642 235688899999988777766778899998765
Q ss_pred Cee---eEEEe------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCC---CCeEEEEee--------cCCCeEEEEe
Q 046871 291 QRC---IHSYA------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA---TRESLLLCT--------GEHPILQLAL 350 (764)
Q Consensus 291 ~~~---~~~l~------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~---~~~~~~~~~--------~~~~V~~l~~ 350 (764)
... +.... ........|+++|.++.|+++.......+|.+. ....+.... .-..+.++++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 432 22222 123346899999999888777665554555443 111122221 1234689999
Q ss_pred eCCc--eEE-EeCCCcEEEeeCCCC
Q 046871 351 HDDN--IWV-ATTDSSVHRWPAEGR 372 (764)
Q Consensus 351 spd~--l~~-~s~dg~I~iwd~~~~ 372 (764)
+|.. +++ ...+..|.++|....
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCC
Confidence 9987 544 445677888887643
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.96 E-value=0.0089 Score=69.62 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=142.6
Q ss_pred eCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCC
Q 046871 102 SSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSG 181 (764)
Q Consensus 102 s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (764)
+....|+..++.. .. ...+......+..|+|.+.++.++++-...+.|+.+++......
T Consensus 401 an~~~Ir~i~l~~-~~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------- 459 (791)
T 3m0c_C 401 TNRHEVRKMTLDR-SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------- 459 (791)
T ss_dssp ECBSSEEEECTTS-CC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------
T ss_pred ccccceeEeeccC-Cc-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-------------------
Confidence 3445677777633 22 22222334567899999555666666666788988888642100
Q ss_pred CCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeccCCc
Q 046871 182 NSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTIKLRGHTD 260 (764)
Q Consensus 182 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 260 (764)
......+.........|++.+.++ ++++-...+.|.+.++........+...-.
T Consensus 460 -------------------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~ 514 (791)
T 3m0c_C 460 -------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 514 (791)
T ss_dssp ---------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC
T ss_pred -------------------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC
Confidence 000011111233456788887664 445556678999999875544333333445
Q ss_pred CeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCCCeEEE
Q 046871 261 NIRSLLLDSTGRYCLSGSS--DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLATRESLL 337 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~--Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~~~~~ 337 (764)
..+.|+++|.+.+|+.+.. .+.|...++........+...-.....|++++....|+.+. ..+.|...++.......
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~ 594 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 594 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence 6899999998666665543 26788888854433333333335688999998777777654 45689999987655544
Q ss_pred Eeec---CCCeEEEEeeCCceEEEe-CCCcEEEeeCCCCCCceeee
Q 046871 338 LCTG---EHPILQLALHDDNIWVAT-TDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 338 ~~~~---~~~V~~l~~spd~l~~~s-~dg~I~iwd~~~~~~~~~~~ 379 (764)
+... -.....|++..+.|+.+. ..+.|...+..+++.+..+.
T Consensus 595 v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 595 ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 4432 123467888777755554 56788888887777666664
No 283
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.91 E-value=0.016 Score=65.86 Aligned_cols=234 Identities=9% Similarity=0.021 Sum_probs=145.3
Q ss_pred CeEEEEeCCCcEEEecCCCCCeeeeecc-ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcC
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGTCIRTLR-QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCS 174 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~~~~~l~-~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 174 (764)
.+|+.+ ....|+..++..... ...+. ..-..+..++|.+.++.++++-..++.|..++++.....
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~-~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~------------ 72 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE------------ 72 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTC-EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------
T ss_pred cEEEEE-eCCcEEEEECCCCCc-ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE------------
Confidence 334443 456788888743222 22221 223467899999656666667667888998888642100
Q ss_pred ccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE
Q 046871 175 TGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTI 253 (764)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~ 253 (764)
............+++.+.+. +.++-...+.|.+.++.......
T Consensus 73 ------------------------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 73 ------------------------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp ------------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred ------------------------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 00111113456788887554 44555567889999986543333
Q ss_pred EeccCCcCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeC
Q 046871 254 KLRGHTDNIRSLLLDSTGRYCLSGSS--DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDL 330 (764)
Q Consensus 254 ~l~~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~ 330 (764)
.+...-...+.|+++|...+|+.... .+.|...++.... ...+...-.....|+++++++.|+.+. ..+.|...|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 33334456789999996666665542 5678888875433 333333445678999999877777554 5678999999
Q ss_pred CCCeEEEEeecCCCeEEEEeeCCceEEEe-CCCcEEEeeCCCCCCceeeec
Q 046871 331 ATRESLLLCTGEHPILQLALHDDNIWVAT-TDSSVHRWPAEGRNPQKVFQR 380 (764)
Q Consensus 331 ~~~~~~~~~~~~~~V~~l~~spd~l~~~s-~dg~I~iwd~~~~~~~~~~~~ 380 (764)
.................+++..+.++.+. ..+.|...|..+++....+..
T Consensus 196 dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 196 LGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp TSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 76544323333334568888877765555 478899999877776666543
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.91 E-value=0.001 Score=77.89 Aligned_cols=149 Identities=9% Similarity=-0.035 Sum_probs=90.1
Q ss_pred EEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce--eEEec-cCCcCeEEEEEcCCCCEEEEEeC---CCcEEEEeCC
Q 046871 221 YALAMNDSGNLLVSGGTE-----KVVRVWDPRTGSK--TIKLR-GHTDNIRSLLLDSTGRYCLSGSS---DSMIRLWDLG 289 (764)
Q Consensus 221 ~~l~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~--~~~l~-~h~~~V~~l~~spdg~~l~sgs~---Dg~I~iwdl~ 289 (764)
..++|+|||+.|+....+ ..|.++++.+++. ...+. ........+.|+|||++|+..+. ...|+++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 367899999888877654 3688889877642 22222 22345678899999999876653 3468889997
Q ss_pred CC--ee-eEEE-eeecCceEEEEEcCCCCEEEEecCC----CcEEEEeCCCC-eEEE-EeecCC--CeEEEEeeCCc-eE
Q 046871 290 QQ--RC-IHSY-AVHTDSVWALASTPTFSHVYSGGRD----LSLYLTDLATR-ESLL-LCTGEH--PILQLALHDDN-IW 356 (764)
Q Consensus 290 ~~--~~-~~~l-~~h~~~V~~l~~spd~~~l~sgs~D----g~I~iwd~~~~-~~~~-~~~~~~--~V~~l~~spd~-l~ 356 (764)
++ +. +..+ ....+..+++.|+..+.+++....+ ..|..+++.++ .... .+.+.. .+..+.+..+. ++
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~ 383 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVV 383 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEE
Confidence 65 22 1333 3344566777766554455555443 36777787652 3222 333332 45666666555 55
Q ss_pred EEeCCCcE--EEeeC
Q 046871 357 VATTDSSV--HRWPA 369 (764)
Q Consensus 357 ~~s~dg~I--~iwd~ 369 (764)
+...++.. .++++
T Consensus 384 ~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 384 AGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred EEEeCCEEEEEEEec
Confidence 56667754 44554
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.91 E-value=0.00036 Score=81.73 Aligned_cols=150 Identities=8% Similarity=0.059 Sum_probs=95.3
Q ss_pred cEEEEEEc-CCCCEEEEEeC-C----CeEEEEeCCCC-ceeEE-eccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q 046871 219 SVYALAMN-DSGNLLVSGGT-E----KVVRVWDPRTG-SKTIK-LRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRL 285 (764)
Q Consensus 219 ~V~~l~~s-p~g~~l~sgs~-d----g~I~iwd~~~~-~~~~~-l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~i 285 (764)
.+...+|| |||++|+.+.. + ..|+++|+.++ +.+.. +. .....++|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998885533 2 25999999998 63221 11 123468899999988877665 35888
Q ss_pred EeCCCCee--eEEEe-eecCceEEEEEcCCCCEEEEec---CCCcEEEEeCCCC--eE--EEEee-cCCCeEEEEeeCCc
Q 046871 286 WDLGQQRC--IHSYA-VHTDSVWALASTPTFSHVYSGG---RDLSLYLTDLATR--ES--LLLCT-GEHPILQLALHDDN 354 (764)
Q Consensus 286 wdl~~~~~--~~~l~-~h~~~V~~l~~spd~~~l~sgs---~Dg~I~iwd~~~~--~~--~~~~~-~~~~V~~l~~spd~ 354 (764)
+++.++.. ...+. .+......+.|+|||++|+..+ ....|+++|+.++ +. ..... .......+.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 89877642 22333 2233467889999999988554 2446888999875 23 22332 23455666655555
Q ss_pred -eEEEeCC---C--cEEEeeCCC
Q 046871 355 -IWVATTD---S--SVHRWPAEG 371 (764)
Q Consensus 355 -l~~~s~d---g--~I~iwd~~~ 371 (764)
|+..+.. + .|..+++.+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEEEeCCCCCCCcEEEEEcCCC
Confidence 5555432 2 455555543
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=0.0031 Score=68.41 Aligned_cols=235 Identities=10% Similarity=0.091 Sum_probs=134.9
Q ss_pred CeeEEEeecccccC-CCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCC-eEEEEeCC-C----cEEE
Q 046871 37 GINCLAVLKSSVSN-GVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDN-TLVSCSSD-T----TLKT 109 (764)
Q Consensus 37 ~V~~l~~~~~~~S~-d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~l~s~s~D-g----~V~v 109 (764)
.-..|++ +| ++..|+.+...+.|+.+|++.. . +..+.........++|++++ .|+.+... + .+.+
T Consensus 138 ~P~~lav-----dp~~~g~Lyv~d~~~~I~~id~~~~--~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSF-----DPKNHNHLYLVGEQHPTRLIDFEKE--Y-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEE-----ETTEEEEEEEEEBTEEEEEEETTTT--E-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEE-----CCCCCCeEEEEeCCCcEEEEECCCC--E-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 3467777 56 4667777766688999998763 2 33343345568889999987 46666542 2 2333
Q ss_pred ecCCCCCeee--eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 110 WNCSSDGTCI--RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 110 Wd~~~~~~~~--~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
.+. .+... ..+. .......+++.|.++.++++-..++.|..++..+....
T Consensus 210 ~~~--~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------------------- 261 (430)
T 3tc9_A 210 LTR--ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------------------- 261 (430)
T ss_dssp EEG--GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-------------------------
T ss_pred EeC--CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------------------
Confidence 332 22211 2222 12345678888547777777777888999998753110
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC--Cce--eEEeccC----
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLL-VSGGTEKVVRVWDPRT--GSK--TIKLRGH---- 258 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l-~sgs~dg~I~iwd~~~--~~~--~~~l~~h---- 258 (764)
.............++|+|+|++| ++-...+.|..++... ++. +..+.+.
T Consensus 262 ----------------------~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~ 319 (430)
T 3tc9_A 262 ----------------------PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK 319 (430)
T ss_dssp ----------------------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB
T ss_pred ----------------------EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC
Confidence 00011112345689999999954 4555678899987643 221 1222111
Q ss_pred -----------CcCeE-EEEEc--------CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee---------c--------
Q 046871 259 -----------TDNIR-SLLLD--------STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH---------T-------- 301 (764)
Q Consensus 259 -----------~~~V~-~l~~s--------pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h---------~-------- 301 (764)
-.... .+++. ++|.+.++=...+.|+.++. +++.. ++.+. .
T Consensus 320 g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~ 397 (430)
T 3tc9_A 320 DWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEAR 397 (430)
T ss_dssp CCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCB
T ss_pred CCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcE
Confidence 01123 45553 34555555556778998884 55433 33221 1
Q ss_pred -CceEEEEEcCC-CCEEEEecCCCcEEEEeCC
Q 046871 302 -DSVWALASTPT-FSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 302 -~~V~~l~~spd-~~~l~sgs~Dg~I~iwd~~ 331 (764)
...+.|+++|+ +.++++-..+..|+.++++
T Consensus 398 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 398 FNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred eCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 14788999985 5555555556778877653
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.0042 Score=67.34 Aligned_cols=238 Identities=11% Similarity=0.071 Sum_probs=135.2
Q ss_pred CeeEEEeecccccCC--CcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCC-----cEEE
Q 046871 37 GINCLAVLKSSVSNG--VDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDT-----TLKT 109 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d--~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg-----~V~v 109 (764)
.-.+|++ +++ ...|+.+...+.|+.+|..++ . +..+.........+++++++.|+.+...+ .+..
T Consensus 140 ~P~gvav-----d~~s~~g~Lyv~D~~~~I~~id~~~g--~-v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 140 NIWRMMF-----DPNSNYDDLYWVGQRDAFRHVDFVNQ--Y-VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCCEEEE-----CTTTTTCEEEEECBTSCEEEEETTTT--E-EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CCceEEE-----ccccCCCEEEEEeCCCCEEEEECCCC--E-EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 4567887 563 455666655589999998763 2 33444445568899999997555555422 1232
Q ss_pred ecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 110 WNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 110 Wd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
.+..........+. .-.....+++.|.++.++++-..++.|+.+|..++.....
T Consensus 212 ~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~------------------------- 265 (433)
T 4hw6_A 212 FTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE------------------------- 265 (433)
T ss_dssp ECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-------------------------
T ss_pred EECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-------------------------
Confidence 33211111001111 2234466788844677776666778898888864311000
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCC--CCce--eEEeccC------
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVRVWDPR--TGSK--TIKLRGH------ 258 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~--~~~~--~~~l~~h------ 258 (764)
+ . ..+....-..++++|+++.|+ +-...+.|+.++.. ++.. ...+.+.
T Consensus 266 ----------~----------~-~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~ 324 (433)
T 4hw6_A 266 ----------E----------V-MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGW 324 (433)
T ss_dssp ----------E----------E-ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCC
T ss_pred ----------E----------e-ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCcc
Confidence 0 0 000111224699999999555 44556889997764 3321 1122211
Q ss_pred ---------CcCeEEEEE---------cCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee------------------cC
Q 046871 259 ---------TDNIRSLLL---------DSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH------------------TD 302 (764)
Q Consensus 259 ---------~~~V~~l~~---------spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h------------------~~ 302 (764)
-.....+++ .++|.+.++-...+.|+.++. ++.. .++.+. -.
T Consensus 325 ~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~ 402 (433)
T 4hw6_A 325 VDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFN 402 (433)
T ss_dssp BCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCS
T ss_pred CCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeC
Confidence 123567899 777777777677788999985 5543 333321 12
Q ss_pred ceEEEEEc-CCCCEEEEecCCCcEEEEeCC
Q 046871 303 SVWALAST-PTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 303 ~V~~l~~s-pd~~~l~sgs~Dg~I~iwd~~ 331 (764)
....|+++ +++.++++=..++.|+.++++
T Consensus 403 ~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 403 HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 36788888 555555555556677777653
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.0066 Score=65.77 Aligned_cols=233 Identities=7% Similarity=0.068 Sum_probs=136.8
Q ss_pred ceeEEEEeCC---CeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCC---Ce-EEEEeCCC
Q 046871 86 WVNDAVLVGD---NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLG---AE-VFIWDIEA 158 (764)
Q Consensus 86 ~V~~v~~s~d---~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~d---g~-I~iwdl~~ 158 (764)
....+++.++ +.|+.+...+.|+.+++ ..+... .+.........++++ ++++++++.... .. +...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~-~~g~v~-~~~~~~~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF-VNQYVD-IKTTNIGQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET-TTTEEE-EECCCCSCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC-CCCEEE-EeecCCCCccEEEEC-CCCCEEEEcCCCCcccceEEEEECCC
Confidence 4568899984 67766665588999996 334443 333345568899999 667744444321 11 22222111
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcC-CCCEEEEEeC
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMND-SGNLLVSGGT 237 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sgs~ 237 (764)
... .. ..+. .......++++| +|.+.++-..
T Consensus 217 ~~~---------------------------------------------~~--~~~~-~~~~P~giavd~~~G~lyv~d~~ 248 (433)
T 4hw6_A 217 GFT---------------------------------------------ER--LSLC-NARGAKTCAVHPQNGKIYYTRYH 248 (433)
T ss_dssp TTC---------------------------------------------CE--EEEE-ECSSBCCCEECTTTCCEEECBTT
T ss_pred Cee---------------------------------------------cc--cccc-ccCCCCEEEEeCCCCeEEEEECC
Confidence 000 00 0000 122345678888 7776666667
Q ss_pred CCeEEEEeCCCCceeEEe-c-cCCcCeEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CCee--eEEEeee----------
Q 046871 238 EKVVRVWDPRTGSKTIKL-R-GHTDNIRSLLLDSTGRYCLSG-SSDSMIRLWDLG--QQRC--IHSYAVH---------- 300 (764)
Q Consensus 238 dg~I~iwd~~~~~~~~~l-~-~h~~~V~~l~~spdg~~l~sg-s~Dg~I~iwdl~--~~~~--~~~l~~h---------- 300 (764)
++.|+.+|..++.....+ . +....-..|+|+|++++|+.+ ...+.|+.++.. ++.. ..++.+.
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~ 328 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGM 328 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCc
Confidence 789999999877663332 1 112223469999999965554 456789998864 2321 1222221
Q ss_pred -----cCceEEEEE---------cCCCCEEEEecCCCcEEEEeCCCCeEEEEeecC------------------CCeEEE
Q 046871 301 -----TDSVWALAS---------TPTFSHVYSGGRDLSLYLTDLATRESLLLCTGE------------------HPILQL 348 (764)
Q Consensus 301 -----~~~V~~l~~---------spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~------------------~~V~~l 348 (764)
-.....+++ .+++.++++-...+.|+.++. ++......... .....|
T Consensus 329 ~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi 407 (433)
T 4hw6_A 329 GTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSI 407 (433)
T ss_dssp GGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred ccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEE
Confidence 123577999 677777667667788999985 45443333210 125688
Q ss_pred Eee-CCc-eEEEeC-CCcEEEeeCC
Q 046871 349 ALH-DDN-IWVATT-DSSVHRWPAE 370 (764)
Q Consensus 349 ~~s-pd~-l~~~s~-dg~I~iwd~~ 370 (764)
+++ +++ |+++.. .+.|+.++++
T Consensus 408 avd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 408 AYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCEEEEEeCCCCEEEEEecC
Confidence 888 566 776654 5677777654
No 289
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.86 E-value=0.057 Score=65.70 Aligned_cols=370 Identities=14% Similarity=0.077 Sum_probs=180.7
Q ss_pred CCCeeEEEeeccc-ccCCCcEEEEEeC-CCcEEEEeCCCCCCccceeecccccceeEEEEe--CCC-eEEEEeCCCcEEE
Q 046871 35 CAGINCLAVLKSS-VSNGVDYLFTGSR-DGTLKRWSLADDVGSCSATFESHVDWVNDAVLV--GDN-TLVSCSSDTTLKT 109 (764)
Q Consensus 35 ~~~V~~l~~~~~~-~S~d~~~L~sgs~-Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s--~d~-~l~s~s~Dg~V~v 109 (764)
...|.|+++.+.. -...+++++.|.. |++|+|+++.+-+......+.. .....++.+. ... +|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 3479999985421 0012479999996 9999999998632222222321 1233444443 222 7888999998765
Q ss_pred ecCCC-CCeeee--eccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcc
Q 046871 110 WNCSS-DGTCIR--TLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPV 186 (764)
Q Consensus 110 Wd~~~-~~~~~~--~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (764)
+.++. ++.... ...--..++.-..+...+..-++.++ ++...++.-+.......... ........+... ..+
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~-~~v~~~~~F~se--~~~- 706 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNL-KEVNYMCPLNSD--GYP- 706 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSS-SCCCEEEEECCS--SST-
T ss_pred EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccCh-HHhceEeccCcc--cCC-
Confidence 55432 232221 11111334444444312222222222 33333333221100000000 000000011100 001
Q ss_pred cceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeC-----------------------------
Q 046871 187 TSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGT----------------------------- 237 (764)
Q Consensus 187 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~----------------------------- 237 (764)
..+. ....+.+.+...............-...+..++++|+.+.++.+..
T Consensus 707 ~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 707 DSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp TEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred CcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 1111 1222334443332222221222222446677777776665443321
Q ss_pred --------------------CCeEEEEeCCCCceeEEeccC-CcCeEEEE---EcCC-CCEEEEEe----------CCCc
Q 046871 238 --------------------EKVVRVWDPRTGSKTIKLRGH-TDNIRSLL---LDST-GRYCLSGS----------SDSM 282 (764)
Q Consensus 238 --------------------dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~---~spd-g~~l~sgs----------~Dg~ 282 (764)
-+.|++.|..+.+.+..+.-. ...+.+++ |..+ ..+|++|+ ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 134778888877766554322 22344444 3322 46888776 3578
Q ss_pred EEEEeCCCCeeeEEE-eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE-EeecCCC--eEEEEeeCCceEEE
Q 046871 283 IRLWDLGQQRCIHSY-AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLL-LCTGEHP--ILQLALHDDNIWVA 358 (764)
Q Consensus 283 I~iwdl~~~~~~~~l-~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~--V~~l~~spd~l~~~ 358 (764)
|++|++..++..... ....++|++++-- +|+++++. ..+|++|++...+.+. ....-.. +..+....+.+++|
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vg 942 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVG 942 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEE
Confidence 999998654332222 1346789998754 34444443 4789999998665443 1111112 23455555558888
Q ss_pred eCCCcEEEeeCCCCC-CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEee
Q 046871 359 TTDSSVHRWPAEGRN-PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKD 437 (764)
Q Consensus 359 s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s 437 (764)
..-.+|.++..+... ....+.. .+. ...++++.+..++ .++.++
T Consensus 943 D~~~Sv~~~~y~~~~~~L~~~a~---------D~~-------------------------~~~vta~~~ld~~-t~l~aD 987 (1158)
T 3ei3_A 943 DLMRSVLLLAYKPMEGNFEEIAR---------DFN-------------------------PNWMSAVEILDDD-NFLGAE 987 (1158)
T ss_dssp ESSBCEEEEEEETTTTEEEEEEE---------CCS-------------------------CBCEEEEEEEETT-EEEEEE
T ss_pred EhhheEEEEEEEcCCCeEEEEEe---------ecc-------------------------cccEEEEEEEccC-cEEEEc
Confidence 877777665443211 0111110 010 2236777777664 677799
Q ss_pred CCCcEEEEEccc
Q 046871 438 AAGSVKLWEITR 449 (764)
Q Consensus 438 ~dG~V~lWdi~t 449 (764)
.+|++.+.....
T Consensus 988 ~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 988 NAFNLFVCQKDS 999 (1158)
T ss_dssp TTSEEEEEEECT
T ss_pred CCCcEEEEecCC
Confidence 999999987764
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.79 E-value=0.0034 Score=64.78 Aligned_cols=195 Identities=12% Similarity=0.219 Sum_probs=122.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC----CCE--EEEEe--C--CCcEEEEeCC-CCeeeEE
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST----GRY--CLSGS--S--DSMIRLWDLG-QQRCIHS 296 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~--l~sgs--~--Dg~I~iwdl~-~~~~~~~ 296 (764)
...+++.....+-+.+||+ +|+.+..+.. +.++.+.+-|+ |+. ++.++ . +++|++|++. ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4566777777889999999 8999888863 55666666552 322 33333 3 5789999773 2223444
Q ss_pred Eee------ec-CceEEEEE--cCC-CC-EEEEecCCCcEEEEeCC-------CCeEEEEeecCCCeEEEEeeCCc--eE
Q 046871 297 YAV------HT-DSVWALAS--TPT-FS-HVYSGGRDLSLYLTDLA-------TRESLLLCTGEHPILQLALHDDN--IW 356 (764)
Q Consensus 297 l~~------h~-~~V~~l~~--spd-~~-~l~sgs~Dg~I~iwd~~-------~~~~~~~~~~~~~V~~l~~spd~--l~ 356 (764)
+.. .. ..+..+++ +|. +. +++....+|.+..|++. +.+.+..+.....+..++..+.. |+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 45666777 774 43 67888889999999983 34566777778888899998865 99
Q ss_pred EEeCCCcEEEeeCCCCC--CceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEE--ecCCc-
Q 046871 357 VATTDSSVHRWPAEGRN--PQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEI--LNNRR- 431 (764)
Q Consensus 357 ~~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~--s~dg~- 431 (764)
++-++..|..++.+... ....+.. +... .+ ...+..+++ .++++
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~--------~~~g---------------------~l--~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDR--------ADGR---------------------HL--TRDIEGLTIYYAADGKG 244 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEE--------BSSS---------------------SB--CSCEEEEEEEECGGGCE
T ss_pred EecccceEEEEeCCcCCCCCceEEEE--------ecCC---------------------cc--ccCcceEEEEecCCCCE
Confidence 99998666666644221 1111110 0000 00 112344455 34555
Q ss_pred EEEEee-CCCcEEEEEcc-ccEEeeec
Q 046871 432 HVLTKD-AAGSVKLWEIT-RGVVVEDY 456 (764)
Q Consensus 432 ~l~t~s-~dG~V~lWdi~-tg~~i~~~ 456 (764)
+|++.+ .+.++.+||.. +.+.+..|
T Consensus 245 yLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 666555 57799999997 78888888
No 291
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.72 E-value=0.14 Score=59.75 Aligned_cols=269 Identities=14% Similarity=0.181 Sum_probs=156.4
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceee-cccccceeEEEEeCCCeEEEEeCCCcEEEecCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF-ESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCS 113 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l-~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~ 113 (764)
...|+||.- +.+| +|..|..+| +..||-.. .+..... ......|.++....++.|..++.+| +..||..
T Consensus 21 ~n~V~~I~q-----D~~G-~lWigT~~G-L~ryDG~~--~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~ 90 (758)
T 3ott_A 21 ASVVSCFLQ-----DSEG-LIWIGSNKG-LFSYDGYS--TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYR 90 (758)
T ss_dssp CCCEEEEEE-----CTTS-CEEEEESSC-EEEECSSC--EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETT
T ss_pred cceEEEEEE-----CCCC-CEEEEECCC-ccccCCCc--eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCC
Confidence 456999998 3454 566677776 55666432 1100000 1123468888888888888888765 7888863
Q ss_pred CCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecC
Q 046871 114 SDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIG 193 (764)
Q Consensus 114 ~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (764)
. .............|.++... ++ .|..++.+ -|..+|..+....
T Consensus 91 ~-~~f~~~~~~~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~------------------------------- 134 (758)
T 3ott_A 91 A-DRYEQPETDFPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT------------------------------- 134 (758)
T ss_dssp T-TEECCCSCCCCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-------------------------------
T ss_pred C-CEEECcccCCCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-------------------------------
Confidence 2 32221111123357776543 34 45555555 4888887642100
Q ss_pred CCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-ecc----CCcCeEEEEEc
Q 046871 194 SSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIK-LRG----HTDNIRSLLLD 268 (764)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~-l~~----h~~~V~~l~~s 268 (764)
.+. ..........|.++....+|.+.+ |+.+ -|..+|..+++.... ... ....|.++...
T Consensus 135 ------~~~-------~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 199 (758)
T 3ott_A 135 ------SFD-------TRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED 199 (758)
T ss_dssp ------EEC-------HHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred ------Eec-------cCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence 000 000001134588888887777555 4444 477888776653221 111 12248889888
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee--------
Q 046871 269 STGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-------- 340 (764)
Q Consensus 269 pdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-------- 340 (764)
.++..|..|+. +-+..+|..+++...........|.++....++.+.+. +. +-+.+++..++.......
T Consensus 200 ~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l 276 (758)
T 3ott_A 200 TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSL 276 (758)
T ss_dssp TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSC
T ss_pred CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcC
Confidence 87776666664 45888998776543322223446888888888776554 33 458888887665433221
Q ss_pred cCCCeEEEEeeCCc-eEEEeCCCcEEEee
Q 046871 341 GEHPILQLALHDDN-IWVATTDSSVHRWP 368 (764)
Q Consensus 341 ~~~~V~~l~~spd~-l~~~s~dg~I~iwd 368 (764)
....|.++....++ ||+|+..| +.++.
T Consensus 277 ~~~~i~~i~~D~~g~lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 277 TNNIIWNIFADQEHNIWLGTDYG-ISLSR 304 (758)
T ss_dssp SCSCEEEEEECTTCCEEEEESSS-EEEEC
T ss_pred CcCeEEEEEEcCCCCEEEEeCCc-ccccc
Confidence 12358899888888 99999876 55543
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.64 E-value=0.018 Score=65.43 Aligned_cols=229 Identities=10% Similarity=-0.001 Sum_probs=133.1
Q ss_pred CCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCC
Q 046871 103 SDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGN 182 (764)
Q Consensus 103 ~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (764)
....|+..++.........+...-..+..++|++.++.++++-...+.|..++++....
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--------------------- 74 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------------- 74 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------
Confidence 35678888864322122222233445789999955555555555567888888864200
Q ss_pred CCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeccCCcC
Q 046871 183 SLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN-LLVSGGTEKVVRVWDPRTGSKTIKLRGHTDN 261 (764)
Q Consensus 183 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 261 (764)
........-.....+++.+.+. +.++-...+.|.+.++........+...-..
T Consensus 75 --------------------------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~ 128 (619)
T 3s94_A 75 --------------------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 128 (619)
T ss_dssp --------------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred --------------------------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCC
Confidence 0001111224578999998555 4555566789999998754433333334456
Q ss_pred eEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeeEEE-eeecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCeEEE
Q 046871 262 IRSLLLDSTGRYCLSGSS--DSMIRLWDLGQQRCIHSY-AVHTDSVWALASTPTFSHVYSG-GRDLSLYLTDLATRESLL 337 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~--Dg~I~iwdl~~~~~~~~l-~~h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~~~~~~~ 337 (764)
...|+++|.+.+|+.+.. .+.|...++.. .....+ ...-...+.|++++++..|+.+ ...+.|...|+.......
T Consensus 129 P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~ 207 (619)
T 3s94_A 129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA 207 (619)
T ss_dssp CCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-
T ss_pred CceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE
Confidence 789999997666665543 45677777743 323333 2233467899999977777655 456789999987654433
Q ss_pred Eee-cCCCeEEEEeeCCceEEEe-CCCcEEEeeCCCCCCceeee
Q 046871 338 LCT-GEHPILQLALHDDNIWVAT-TDSSVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 338 ~~~-~~~~V~~l~~spd~l~~~s-~dg~I~iwd~~~~~~~~~~~ 379 (764)
... .......|++..+.++.+. ..+.|...|..+++....+.
T Consensus 208 ~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 208 VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp --------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred EEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEe
Confidence 332 1122356777777755554 46789999988776655543
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.014 Score=63.71 Aligned_cols=252 Identities=9% Similarity=0.045 Sum_probs=137.7
Q ss_pred eeEEEeecccccC-CCcEEEEEeC-CCcEEEEeCCCCCCccceeec-c---cccceeEEEE-------eCCC-eEEEEeC
Q 046871 38 INCLAVLKSSVSN-GVDYLFTGSR-DGTLKRWSLADDVGSCSATFE-S---HVDWVNDAVL-------VGDN-TLVSCSS 103 (764)
Q Consensus 38 V~~l~~~~~~~S~-d~~~L~sgs~-Dg~I~iWd~~~~~~~~~~~l~-~---h~~~V~~v~~-------s~d~-~l~s~s~ 103 (764)
-..|+| +| +...|+.+.. .+.|++.|+.++. +.++. . .......++| .+++ .|+.+..
T Consensus 141 p~~la~-----dp~~~~~Lyv~~~~~~~i~~ID~~~~~---v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 141 NGRLAF-----DPLNKDHLYICYDGHKAIQLIDLKNRM---LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp EEEEEE-----ETTEEEEEEEEEETEEEEEEEETTTTE---EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCEEEE-----ccCCCCEEEEEECCCCeEEEEECCCCE---EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence 456777 56 3555665544 4678888888633 33322 1 1235788999 8887 4666665
Q ss_pred CC-c------EEEecCCCCCeee-----eeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCC-------CCCCCCC
Q 046871 104 DT-T------LKTWNCSSDGTCI-----RTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE-------AALAPSK 164 (764)
Q Consensus 104 Dg-~------V~vWd~~~~~~~~-----~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~-------~~~~~~~ 164 (764)
.+ . |.+.+...++... ..+... .....++++|.++.++++-..++.|..+|+. ++..-..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 54 2 5566532312221 122221 2345778885577777778788889999987 3311000
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCC-ccceeccCCCCcEEEEEEcCCCCEEE-EEeCCCeEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQG-YVPIAAKGHKESVYALAMNDSGNLLV-SGGTEKVVR 242 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~V~~l~~sp~g~~l~-sgs~dg~I~ 242 (764)
... + ..+ .............+.|+|+|+|+.|+ +-...+.|+
T Consensus 292 ~~~---------------------------------~---~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ 335 (496)
T 3kya_A 292 IVK---------------------------------N---NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFM 335 (496)
T ss_dssp BGG---------------------------------G---CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred ccc---------------------------------c---cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEE
Confidence 000 0 000 00000111233457999999999544 445677898
Q ss_pred EEeC--CCCce--eEEeccC------C---------cCeE-EEEEc-------CCCCEEEEEeCCCcEEEEeCCCCeeeE
Q 046871 243 VWDP--RTGSK--TIKLRGH------T---------DNIR-SLLLD-------STGRYCLSGSSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 243 iwd~--~~~~~--~~~l~~h------~---------~~V~-~l~~s-------pdg~~l~sgs~Dg~I~iwdl~~~~~~~ 295 (764)
.+|. ..+.. ...+-+. . .... .++.. ++|.+.++=+..+.|+.++. ++ .+.
T Consensus 336 kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~ 413 (496)
T 3kya_A 336 RSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVS 413 (496)
T ss_dssp EEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEE
T ss_pred EEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEE
Confidence 8654 33321 1222211 1 1233 45554 45666666667788999984 55 344
Q ss_pred EEeeec------------------------CceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCeEE
Q 046871 296 SYAVHT------------------------DSVWALASTPT-FSHVYSGGRDLSLYLTDLATRESL 336 (764)
Q Consensus 296 ~l~~h~------------------------~~V~~l~~spd-~~~l~sgs~Dg~I~iwd~~~~~~~ 336 (764)
++.+.. ...+.|+++++ +.++++=.....|+.+++......
T Consensus 414 TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 414 TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 554320 12567888886 555555555677888877655443
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.60 E-value=0.058 Score=62.81 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=135.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeE-EEEeCCCcEEEecCCCCC---eeeeeccccCCc
Q 046871 54 YLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTL-VSCSSDTTLKTWNCSSDG---TCIRTLRQHSDY 128 (764)
Q Consensus 54 ~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l-~s~s~Dg~V~vWd~~~~~---~~~~~l~~h~~~ 128 (764)
+|+.+.. ..|+..++... . ...+......+..++|.+. +.| ++-...+.|+.+++.... .....+......
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~--~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRS--E-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEECB-SSEEEECTTSC--C-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred ccccccc-cceeEeeccCC--c-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 4444443 56888888753 2 2233334556778999874 544 455556788888874311 222233323455
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
...|++.+..++++++-...+.|.+.++....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------------------------------------------------ 504 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------------------------------------------ 504 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS------------------------------------------------
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCe------------------------------------------------
Confidence 67888884455666677778889999987521
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGGT--EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRL 285 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~i 285 (764)
..............|++.|.+..|+.... .+.|...++........+...-.....|++++.+..|+.+. ..+.|..
T Consensus 505 ~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 505 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 00111122344789999997666665543 36899999864444333333345788999998777776664 4567999
Q ss_pred EeCCCCeeeEEEeee--cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEe
Q 046871 286 WDLGQQRCIHSYAVH--TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLC 339 (764)
Q Consensus 286 wdl~~~~~~~~l~~h--~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 339 (764)
+++........+... -....+|++..+ .++++-...+.|...+..+++.+..+
T Consensus 585 ~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 585 IDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 998543333333221 123456666432 33334445577777776666544433
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.58 E-value=0.082 Score=53.49 Aligned_cols=229 Identities=12% Similarity=0.166 Sum_probs=138.0
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccC--
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHS-- 126 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~-- 126 (764)
+|..+.||--. ..++.|+|+++ ...+..+.- ...|.-=.|..+..|+-.+. ..|+-|++..+..+.+.+..|.
T Consensus 75 nP~~~ViALra-g~~LQiFnlet--K~klks~~~-~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L 149 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEM--KSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL 149 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTT--TEEEEEEEC-SSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGG
T ss_pred CCCccEEEEec-CCeEEEechHH--hhhhcceec-CCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhc
Confidence 67888888765 57899999998 333443332 34565566777776655553 5799999866566666666554
Q ss_pred --CceEEEEEecCCCcEEEEEeC-------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCc
Q 046871 127 --DYVTCLAAAEKNSNIVASGGL-------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNS 197 (764)
Q Consensus 127 --~~V~~l~~~p~~~~~lasg~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (764)
..|..-..+ ++.++++..|- .|.+.+|..+..
T Consensus 150 ~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------------------------------------- 190 (365)
T 2xzh_A 150 AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------------------------------------- 190 (365)
T ss_dssp TTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEEEEEEETTTT--------------------------------------
T ss_pred ccceEEEEEEC-CCCCEEEEEeEeccCCccceeEEEEeeccc--------------------------------------
Confidence 345566666 67777766553 256777777643
Q ss_pred ccccccCCCCccceeccCCCCcEEEEEEcC--CC-CEEEEEe---CCCeEEEEeCCCC---c-----eeEE-ec---cCC
Q 046871 198 ISAHTSQSQGYVPIAAKGHKESVYALAMND--SG-NLLVSGG---TEKVVRVWDPRTG---S-----KTIK-LR---GHT 259 (764)
Q Consensus 198 i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp--~g-~~l~sgs---~dg~I~iwd~~~~---~-----~~~~-l~---~h~ 259 (764)
....+.+|-.....+.+.. .. .+++.+. ..+.++|.++... . .... +. ...
T Consensus 191 -----------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~ 259 (365)
T 2xzh_A 191 -----------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 259 (365)
T ss_dssp -----------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT
T ss_pred -----------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccC
Confidence 1122344433322222211 11 1222221 1257888887432 1 1111 11 124
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
+--.++.+++.-..++.-+.-|.|++||+.++.++..-+-..+.|-.-+.+.+..=++...+.|.|.--.+..
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 5566888888888899999999999999999999988776666665555544434444445566555444433
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.56 E-value=0.016 Score=59.83 Aligned_cols=203 Identities=16% Similarity=0.256 Sum_probs=125.8
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCC----C----eEEEEe-C--CCcEEEecCCCCCe
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD----N----TLVSCS-S--DTTLKTWNCSSDGT 117 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d----~----~l~s~s-~--Dg~V~vWd~~~~~~ 117 (764)
.|...+++.....+-+.+||+. ++.++.+.. +.++.+..-++ + .+++.. . +++|.+|++.....
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~---G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLD---GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETT---SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred CCCccEEEEEcCCCCEEEEcCC---CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 3455677777778899999994 566777653 45666665553 2 223333 3 57899997643333
Q ss_pred eeeeccc------cC-CceEEEEE--ecCCCc-EEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccc
Q 046871 118 CIRTLRQ------HS-DYVTCLAA--AEKNSN-IVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVT 187 (764)
Q Consensus 118 ~~~~l~~------h~-~~V~~l~~--~p~~~~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (764)
.+..+.. .. ..+..+++ ++..+. ++++...+|.+..|++.......
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~------------------------ 167 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY------------------------ 167 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC------------------------
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc------------------------
Confidence 3444421 11 44555666 543443 68888889999999985310000
Q ss_pred ceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----CCceeEEec-cC-Cc
Q 046871 188 SLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR-----TGSKTIKLR-GH-TD 260 (764)
Q Consensus 188 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~-----~~~~~~~l~-~h-~~ 260 (764)
+ ....+..+. ..+.+-.+...+....|+.+-++.-|..+|.+ +++.+..+. ++ ..
T Consensus 168 ----------~-------~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~a 229 (355)
T 3amr_A 168 ----------I-------SGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTR 229 (355)
T ss_dssp ----------E-------EEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCS
T ss_pred ----------c-------cceEEEEec-CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCcccc
Confidence 0 011112222 23568889999988899999999888888855 344554442 22 24
Q ss_pred CeEEEEE--cCCCC-EEEEEe-CCCcEEEEeCC-CCeeeEEEe
Q 046871 261 NIRSLLL--DSTGR-YCLSGS-SDSMIRLWDLG-QQRCIHSYA 298 (764)
Q Consensus 261 ~V~~l~~--spdg~-~l~sgs-~Dg~I~iwdl~-~~~~~~~l~ 298 (764)
.+..|++ .++++ +|++++ .+.+..+||.+ +.+.+..|.
T Consensus 230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 6888888 45666 666665 57799999996 566666664
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.55 E-value=0.011 Score=60.42 Aligned_cols=151 Identities=9% Similarity=0.054 Sum_probs=104.8
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE-ecc----CCc--CeEEEEE---cCCCCEEEEEe----------
Q 046871 220 VYALAMNDSGNLLVSGG-TEKVVRVWDPRTGSKTIK-LRG----HTD--NIRSLLL---DSTGRYCLSGS---------- 278 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs-~dg~I~iwd~~~~~~~~~-l~~----h~~--~V~~l~~---spdg~~l~sgs---------- 278 (764)
-.+++|++....+..++ ..+.|..||...+..... +.+ ... .+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678987555666665 789999999976643332 322 111 3578999 68877776543
Q ss_pred ---CCCcEEEEeCC---CCeeeEEEe--eec-----------CceEEEEEcCCCCEEEEecCC-CcEEEEeCCCCeEEEE
Q 046871 279 ---SDSMIRLWDLG---QQRCIHSYA--VHT-----------DSVWALASTPTFSHVYSGGRD-LSLYLTDLATRESLLL 338 (764)
Q Consensus 279 ---~Dg~I~iwdl~---~~~~~~~l~--~h~-----------~~V~~l~~spd~~~l~sgs~D-g~I~iwd~~~~~~~~~ 338 (764)
.+..|..||+. +++.+.... ... .....++..++|+..++++.. +.|...+.........
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~ 174 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF 174 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence 26779999998 787766554 111 247899999999999988888 8888888765433222
Q ss_pred eec------CCCeEEEEeeCCc--eEEEeCCCcEEEeeCC
Q 046871 339 CTG------EHPILQLALHDDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 339 ~~~------~~~V~~l~~spd~--l~~~s~dg~I~iwd~~ 370 (764)
... ....+.|+++|++ |++....+.|..+|+.
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 211 1236799999999 6666668999999987
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.54 E-value=0.01 Score=62.40 Aligned_cols=233 Identities=14% Similarity=0.072 Sum_probs=121.4
Q ss_pred cceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeecc---ccCCceEEEEEecC---CCcEEEEEeCC-----CeEEE
Q 046871 85 DWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLR---QHSDYVTCLAAAEK---NSNIVASGGLG-----AEVFI 153 (764)
Q Consensus 85 ~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~---~h~~~V~~l~~~p~---~~~~lasg~~d-----g~I~i 153 (764)
.....++|.|++.++.+..++.|++++ ......+..+. ........|+++|. ++.+.++-... +.|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 346789999999777778889999998 22222222221 22356789999943 24444444332 56777
Q ss_pred EeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEE
Q 046871 154 WDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLV 233 (764)
Q Consensus 154 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 233 (764)
++....... . ...+..... ......|. ...++|.|+|.+.+
T Consensus 110 ~~~~~~~~~-------------------------~--------~~~l~~~~p----~~~~~~h~--~~~l~~~pdG~Lyv 150 (352)
T 2ism_A 110 LRHLGERGV-------------------------L--------DRVVLDGIP----ARPHGLHS--GGRIAFGPDGMLYV 150 (352)
T ss_dssp EEECSSCEE-------------------------E--------EEEEEEEEC----CCTTCCCC--CCCEEECTTSCEEE
T ss_pred EEeCCCCcC-------------------------c--------eEEEEEeCC----CCCCCCcC--CceEEECCCCCEEE
Confidence 776531000 0 000000000 00001122 24789999997666
Q ss_pred EEeC-------------CCeEEEEeCCCC-------------ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCCc----
Q 046871 234 SGGT-------------EKVVRVWDPRTG-------------SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDSM---- 282 (764)
Q Consensus 234 sgs~-------------dg~I~iwd~~~~-------------~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg~---- 282 (764)
+.+. .|.|.-+|.... ....-..++ .....++|+| +|.++++-.....
T Consensus 151 ~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~ 229 (352)
T 2ism_A 151 TTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGY 229 (352)
T ss_dssp ECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------
T ss_pred EECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCC
Confidence 6432 256777776430 111111223 2356789999 5665444332222
Q ss_pred ----EEEEeCCC----------------CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-------E
Q 046871 283 ----IRLWDLGQ----------------QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-------S 335 (764)
Q Consensus 283 ----I~iwdl~~----------------~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~-------~ 335 (764)
|.+..... ..++..+. +......++| .++.++++.-..+.|...++.... .
T Consensus 230 ~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~ 307 (352)
T 2ism_A 230 GHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRV 307 (352)
T ss_dssp CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecch
Confidence 33322111 01222332 2234567777 466666666667778877775432 1
Q ss_pred EEEeecCCCeEEEEeeCCc-eEEEeC
Q 046871 336 LLLCTGEHPILQLALHDDN-IWVATT 360 (764)
Q Consensus 336 ~~~~~~~~~V~~l~~spd~-l~~~s~ 360 (764)
...+.....+..+++.||+ |++++.
T Consensus 308 ~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 308 ETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred heecccCCCeeEEEECCCCcEEEEEe
Confidence 2222334578899999999 777664
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.54 E-value=0.00047 Score=79.73 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=96.4
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeeEEE
Q 046871 221 YALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS--DSMIRLWDLGQQRCIHSY 297 (764)
Q Consensus 221 ~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwdl~~~~~~~~l 297 (764)
..|++.+. ++++++-...+.|.++++........+.........|+++|.+.+|+.+.. .+.|.++++... ....+
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEE
Confidence 45677753 444455455678999998655433333323345678999997666555443 267888877432 22222
Q ss_pred -eeecCceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCeEEEEeec---CCCeEEEEeeCCc-eEEEeCCCcEEEeeCCC
Q 046871 298 -AVHTDSVWALASTPTFSHVY-SGGRDLSLYLTDLATRESLLLCTG---EHPILQLALHDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 298 -~~h~~~V~~l~~spd~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~ 371 (764)
...-.....|+++|++..|+ +-+..+.|.++++........+.. ......|++..+. +|+....+.|..++..+
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 22223467899998766665 445567899999975443333321 1234566777777 44555568899999877
Q ss_pred CCCceeee
Q 046871 372 RNPQKVFQ 379 (764)
Q Consensus 372 ~~~~~~~~ 379 (764)
++....+.
T Consensus 615 G~~~~~i~ 622 (699)
T 1n7d_A 615 GSDVNLLA 622 (699)
T ss_dssp EEEEECCC
T ss_pred CCceEEee
Confidence 76655554
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.52 E-value=0.21 Score=56.48 Aligned_cols=155 Identities=11% Similarity=0.095 Sum_probs=98.7
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeeE
Q 046871 218 ESVYALAMNDSGNLLV-SGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYC-LSGSSDSMIRLWDLGQQRCIH 295 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l-~sgs~Dg~I~iwdl~~~~~~~ 295 (764)
..+.+++|.+.+..|+ +-...+.|+.+++........+...-.....++++..+..| ++-+..+.|.+.++.... ..
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~ 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RK 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EE
Confidence 4567899988554444 44557889999887544433333333567789998755544 455567889999986443 33
Q ss_pred EEe-eecCceEEEEEcCCCCEEEEec--CCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeC-CCcEEEee
Q 046871 296 SYA-VHTDSVWALASTPTFSHVYSGG--RDLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATT-DSSVHRWP 368 (764)
Q Consensus 296 ~l~-~h~~~V~~l~~spd~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~-dg~I~iwd 368 (764)
++. ..-.....|+++|...+|+-.. ....|...++.......... .-.....|+++++. |+.+.. .+.|..++
T Consensus 428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~ 507 (619)
T 3s94_A 428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMN 507 (619)
T ss_dssp EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence 332 2335678999999755555443 24677777776543333332 23467889999754 666654 56788888
Q ss_pred CCCCC
Q 046871 369 AEGRN 373 (764)
Q Consensus 369 ~~~~~ 373 (764)
++...
T Consensus 508 ~dG~~ 512 (619)
T 3s94_A 508 TDGTG 512 (619)
T ss_dssp SSSCC
T ss_pred cCCCc
Confidence 86544
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=0.066 Score=58.31 Aligned_cols=222 Identities=9% Similarity=0.118 Sum_probs=118.0
Q ss_pred CcEEEEEE-------cCCCCEEEEEeCCC-------eEEEEeCCC-Ccee-----EEeccCCcCeEEEEEcCC-CCEEEE
Q 046871 218 ESVYALAM-------NDSGNLLVSGGTEK-------VVRVWDPRT-GSKT-----IKLRGHTDNIRSLLLDST-GRYCLS 276 (764)
Q Consensus 218 ~~V~~l~~-------sp~g~~l~sgs~dg-------~I~iwd~~~-~~~~-----~~l~~h~~~V~~l~~spd-g~~l~s 276 (764)
.....++| +++|+.|+++...+ .|.+++... +... ..+... .....++++|+ +.++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence 35789999 99999666665543 366776433 2221 122211 23457788995 455556
Q ss_pred EeCCCcEEEEeCC-------CCee-----------eEE-Eee-ecCceEEEEEcCCCCEEEEe-cCCCcEEEEeCC--CC
Q 046871 277 GSSDSMIRLWDLG-------QQRC-----------IHS-YAV-HTDSVWALASTPTFSHVYSG-GRDLSLYLTDLA--TR 333 (764)
Q Consensus 277 gs~Dg~I~iwdl~-------~~~~-----------~~~-l~~-h~~~V~~l~~spd~~~l~sg-s~Dg~I~iwd~~--~~ 333 (764)
-..++.|..+|+. ++.. ... +.. .......|+|+|++++|+.+ .....|+.++.. .+
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 6677889999987 4543 112 221 22346799999999965554 456788886653 33
Q ss_pred eEE--EEeecC----------------CCeE-EEEee-------CCc-eEEEeC-CCcEEEeeCCCCCCceeeecCCcce
Q 046871 334 ESL--LLCTGE----------------HPIL-QLALH-------DDN-IWVATT-DSSVHRWPAEGRNPQKVFQRGGSFI 385 (764)
Q Consensus 334 ~~~--~~~~~~----------------~~V~-~l~~s-------pd~-l~~~s~-dg~I~iwd~~~~~~~~~~~~~~~~~ 385 (764)
... ..+... .... .++.. +++ |+++.. .+.|+.++. ++ .+.++.+.....
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~ 422 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGAST 422 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccc
Confidence 220 111110 1133 45554 455 777654 578888884 33 333443321100
Q ss_pred --eccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecC-CcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 386 --AGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNN-RRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 386 --~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~d-g~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.....+. ..+|.. .....-.....+++.++ |...++=.....|+.+++....++...
T Consensus 423 ~~~~~~~~G----~~dG~~----------~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 423 SLADGNQWG----TDDGDL----------REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp HHHHSCSCC----CCCEET----------TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-----
T ss_pred cccCccccc----cCCCCc----------hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccC
Confidence 0000000 001100 00001123567888887 666666566778999998876666544
No 302
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.45 E-value=0.31 Score=56.74 Aligned_cols=271 Identities=13% Similarity=0.186 Sum_probs=151.4
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCC
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSS 114 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~ 114 (764)
...|.+|..+ .+ ..|..|+.+| +..+|..+..... ........|.++.. .++.|..++.+ -+..++..
T Consensus 62 ~~~i~~i~~d-----~~-g~lWigT~~G-l~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~- 129 (758)
T 3ott_A 62 NTRIYCGVII-----DN-TYLYMGTDNG-ILVYNYRADRYEQ--PETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQ- 129 (758)
T ss_dssp SSCEEEEEEE-----TT-TEEEEEETTE-EEEEETTTTEECC--CSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETT-
T ss_pred CceEEEEEEc-----CC-CcEEEEeCCC-eEEEeCCCCEEEC--cccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCC-
Confidence 3468888773 44 4677777665 7889987632211 11112234666654 45667777766 57788853
Q ss_pred CCeeeeecc-----ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccce
Q 046871 115 DGTCIRTLR-----QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSL 189 (764)
Q Consensus 115 ~~~~~~~l~-----~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (764)
.++. ..+. .....|.++... .++.+.+ |+.+| |..+|..+.....
T Consensus 130 ~~~~-~~~~~~~~~l~~~~i~~i~~d-~~g~lWi-gt~~G-l~~~~~~~~~~~~-------------------------- 179 (758)
T 3ott_A 130 SRKL-TSFDTRRNGLPNNTIYSIIRT-KDNQIYV-GTYNG-LCRYIPSNGKFEG-------------------------- 179 (758)
T ss_dssp TCCE-EEECHHHHCCSCSCEEEEEEC-TTCCEEE-EETTE-EEEEETTTTEEEE--------------------------
T ss_pred CCeE-EEeccCCCCcCCCeEEEEEEc-CCCCEEE-EeCCC-HhhCccCCCceEE--------------------------
Confidence 2322 2221 123467887776 4555544 44444 7778875431100
Q ss_pred eecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC
Q 046871 190 RTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS 269 (764)
Q Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 269 (764)
.... .........|.++....++..|..|+. +-|..+|..+++...........|.++....
T Consensus 180 -----------~~~~------~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 241 (758)
T 3ott_A 180 -----------IPLP------VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG 241 (758)
T ss_dssp -----------ECCC------CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT
T ss_pred -----------ecCC------CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC
Confidence 0000 000001234788888877776666664 4588899877653221111234688888888
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEEee--------ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQRCIHSYAV--------HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT- 340 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~--------h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~- 340 (764)
+|.+.+ |+. +-+.+++..+++.. .+.. ....|+++..+.++.+.+ |+..| +.++.....-......
T Consensus 242 ~g~lWi-gT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~ 316 (758)
T 3ott_A 242 NGDLLA-GTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQ 316 (758)
T ss_dssp TCCEEE-EET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHH
T ss_pred CCCEEE-EeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEeccc
Confidence 887654 444 45888888765432 2221 224589998888876544 44456 5544332211111110
Q ss_pred -----cCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCC
Q 046871 341 -----GEHPILQLALHDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 341 -----~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~ 371 (764)
....|.++....++ ||+|+.+ .+..++..+
T Consensus 317 ~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~ 352 (758)
T 3ott_A 317 ITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPA 352 (758)
T ss_dssp HSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTT
T ss_pred CCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccc
Confidence 13468888888888 9999965 466666554
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.44 E-value=0.021 Score=58.41 Aligned_cols=168 Identities=8% Similarity=0.027 Sum_probs=109.2
Q ss_pred ccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCccccccc
Q 046871 124 QHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTS 203 (764)
Q Consensus 124 ~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 203 (764)
....+..+++|.+.++.++++.-..+.|..||...+.......
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~------------------------------------- 52 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI------------------------------------- 52 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-------------------------------------
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-------------------------------------
Confidence 3445566889984455555555578999999986431100000
Q ss_pred CCCCccceeccCCCCcEEEEEE---cCCCCEEEEEe-------------CCCeEEEEeCC---CCceeEEec--cC----
Q 046871 204 QSQGYVPIAAKGHKESVYALAM---NDSGNLLVSGG-------------TEKVVRVWDPR---TGSKTIKLR--GH---- 258 (764)
Q Consensus 204 ~~~~~~~~~~~~~~~~V~~l~~---sp~g~~l~sgs-------------~dg~I~iwd~~---~~~~~~~l~--~h---- 258 (764)
. . . .........+..|.+ .|+++++++.. .+..|..||+. +++.+.... ..
T Consensus 53 ~--~-~-s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~ 128 (334)
T 2p9w_A 53 D--G-A-SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEF 128 (334)
T ss_dssp T--T-T-CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHH
T ss_pred C--C-c-cccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccc
Confidence 0 0 0 000001123578999 68877777543 26789999999 787765443 11
Q ss_pred -------CcCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeeeEEEeeec------CceEEEEEcCCCCEEEEecCCCc
Q 046871 259 -------TDNIRSLLLDSTGRYCLSGSSD-SMIRLWDLGQQRCIHSYAVHT------DSVWALASTPTFSHVYSGGRDLS 324 (764)
Q Consensus 259 -------~~~V~~l~~spdg~~l~sgs~D-g~I~iwdl~~~~~~~~l~~h~------~~V~~l~~spd~~~l~sgs~Dg~ 324 (764)
......++..++|+..++++.- +.|..++... +.+..+.... ...+.|+++|++..|+....+|.
T Consensus 129 ~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~ 207 (334)
T 2p9w_A 129 EKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA 207 (334)
T ss_dssp HHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS
T ss_pred cccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe
Confidence 1348899999999999988888 8888887643 3333332111 12569999999999988877999
Q ss_pred EEEEeCCCC
Q 046871 325 LYLTDLATR 333 (764)
Q Consensus 325 I~iwd~~~~ 333 (764)
+..+|+...
T Consensus 208 L~~fD~~~p 216 (334)
T 2p9w_A 208 LTAFDVSKP 216 (334)
T ss_dssp EEEEECSSS
T ss_pred EEEEcCCCC
Confidence 999998854
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.34 E-value=0.34 Score=54.87 Aligned_cols=323 Identities=13% Similarity=0.076 Sum_probs=173.3
Q ss_pred CeeEEEeecccccCCCcEEEEEe--CCCcEEEEeCCCCCCccceeecccccceeEEEEeCC-CeEEEE-eCCCcEEEecC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGS--RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSC-SSDTTLKTWNC 112 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs--~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~l~s~-s~Dg~V~vWd~ 112 (764)
.-..|++ +|...+|+... ..+.|...+++... ...+-..-.+.+.+++.++ +.|+.+ ...+.|...++
T Consensus 124 ~P~~iav-----dp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 124 SPRALAL-----DPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp CEEEEEE-----ETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcccEEE-----ccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 3567888 46555565554 24677777776422 3333334567889999986 455544 45678888887
Q ss_pred CCCCeeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC----------------CcCCcCc-
Q 046871 113 SSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDA----------------MEDDCST- 175 (764)
Q Consensus 113 ~~~~~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~----------------~~~~~~~- 175 (764)
..... ..+.........+++. . +.++++-...+.|...|..++......... ....|..
T Consensus 196 dG~~~--~v~~~~l~~P~glav~-~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ 271 (628)
T 4a0p_A 196 LGLNR--EVIADDLPHPFGLTQY-Q-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASS 271 (628)
T ss_dssp TSCSC--EEEEECCSCEEEEEEE-T-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTT
T ss_pred CCCce--EEeeccCCCceEEEEE-C-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccC
Confidence 43222 3333334455688887 3 455556556788888886554322111000 0000000
Q ss_pred -c----------------ccCCCCCCcc--------cceeecCCCCcccccccCCCCccceec-cCCCCcEEEEEEcCCC
Q 046871 176 -G----------------INGSGNSLPV--------TSLRTIGSSNSISAHTSQSQGYVPIAA-KGHKESVYALAMNDSG 229 (764)
Q Consensus 176 -~----------------~~~~~~~~~~--------~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~V~~l~~sp~g 229 (764)
+ .+..+..+.. ......+....+..............+ ...-..+.+++|.+..
T Consensus 272 ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~ 351 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD 351 (628)
T ss_dssp GGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTT
T ss_pred CCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCC
Confidence 0 0000000000 000000111111111111100000011 1122457889998865
Q ss_pred CEEEEE-eCCCeEEEEeCCCCceeEEecc------CCcCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeeEEEe-ee
Q 046871 230 NLLVSG-GTEKVVRVWDPRTGSKTIKLRG------HTDNIRSLLLDSTGRYCL-SGSSDSMIRLWDLGQQRCIHSYA-VH 300 (764)
Q Consensus 230 ~~l~sg-s~dg~I~iwd~~~~~~~~~l~~------h~~~V~~l~~spdg~~l~-sgs~Dg~I~iwdl~~~~~~~~l~-~h 300 (764)
+.|+.. ...+.|+.+++........+.. ....+..|++...++.|+ +-+..+.|.+.++. |+...++. ..
T Consensus 352 ~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~ 430 (628)
T 4a0p_A 352 KQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGE 430 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECT
T ss_pred CeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCC
Confidence 555544 4567888888764433333322 234678999999877655 55667889999985 55444443 33
Q ss_pred cCceEEEEEcCCCCEEE-EecCCC--cEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEeC-CCcEEEeeCCCC
Q 046871 301 TDSVWALASTPTFSHVY-SGGRDL--SLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVATT-DSSVHRWPAEGR 372 (764)
Q Consensus 301 ~~~V~~l~~spd~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s~-dg~I~iwd~~~~ 372 (764)
.....+|+++|...+|+ +-.... .|...++.......... .-.....|+++++. |+.+.. .+.|...+++..
T Consensus 431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 46789999999544444 432222 67777776544433333 23456899999875 666654 578888888654
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.33 E-value=0.22 Score=52.38 Aligned_cols=222 Identities=13% Similarity=0.188 Sum_probs=133.1
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccC--
Q 046871 49 SNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHS-- 126 (764)
Q Consensus 49 S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~-- 126 (764)
+|..+.||-=. ..++.|+|+++ ...+..+.- ...|.-=.|..+..|+..+ +..|+-|++..+..+.+.+..|.
T Consensus 74 nP~~~iiALra-g~~lQiFnle~--K~klks~~~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEM--KSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTT--TEEEEEEEC-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred CCCCcEEEEec-CCeEEEEchHH--hhhhcceec-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhc
Confidence 57777777665 57899999998 333333332 3456656777776665554 46799999866556666666554
Q ss_pred --CceEEEEEecCCCcEEEEEeC-------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCc
Q 046871 127 --DYVTCLAAAEKNSNIVASGGL-------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNS 197 (764)
Q Consensus 127 --~~V~~l~~~p~~~~~lasg~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (764)
..|..-..+ ++.++++..|- .|.+.+|..+..
T Consensus 149 ~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------------------------------------- 189 (494)
T 1bpo_A 149 AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------------------------------------- 189 (494)
T ss_dssp TTCEEEEEEEC-TTSSEEEEEEEEEETTEEEEEEEEEESTTC--------------------------------------
T ss_pred ccceEEEEEEC-CCCCeEEEEeecccCCcccceEEEeecccc--------------------------------------
Confidence 356666666 67788775543 356778877653
Q ss_pred ccccccCCCCccceeccCCCCcEEEEEEcCC---CCEEEEEeC---CCeEEEEeCCCC--------ceeEEe----ccCC
Q 046871 198 ISAHTSQSQGYVPIAAKGHKESVYALAMNDS---GNLLVSGGT---EKVVRVWDPRTG--------SKTIKL----RGHT 259 (764)
Q Consensus 198 i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~---g~~l~sgs~---dg~I~iwd~~~~--------~~~~~l----~~h~ 259 (764)
....+.+|-.....+.+..+ ..+++.+.. .+.++|.++... +....+ ....
T Consensus 190 -----------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 190 -----------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp -----------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred -----------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 11224444443333332211 012222222 268888887432 111111 1224
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcE
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSL 325 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I 325 (764)
+--.++.+++.-..++.-+.-|.|++||+.++.++..-+-..+.|..-+.+....=++...+.|.|
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 556788899988899999999999999999999998777655555444443333333333344433
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.25 E-value=0.14 Score=53.51 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=126.0
Q ss_pred cceeEEEEeCCCeEEEEeCCCcEEEecCCCCCe-eeeecc---ccCCceEEEEEecC---CCcEEEEEeC---C----Ce
Q 046871 85 DWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGT-CIRTLR---QHSDYVTCLAAAEK---NSNIVASGGL---G----AE 150 (764)
Q Consensus 85 ~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~-~~~~l~---~h~~~V~~l~~~p~---~~~~lasg~~---d----g~ 150 (764)
.....++|.|++.|+.+..++.|++++. ++. .+..+. ........|+++|. ++.+.++-.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4467899999998888888899999973 343 222221 12346789999943 3444444432 2 45
Q ss_pred EEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCC
Q 046871 151 VFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGN 230 (764)
Q Consensus 151 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 230 (764)
|..|+....... .... . .++.. ......|. ...|+|.|+|.
T Consensus 107 v~r~~~~~~~~~-----------------------~~~~-------~-~l~~~------~~~~~~h~--~~~l~~~pDG~ 147 (354)
T 3a9g_A 107 VIRGRLDGSTFK-----------------------LKEV-------K-TLIDG------IPGAYIHN--GGRIRFGPDGM 147 (354)
T ss_dssp EEEEEECSSSCC-----------------------EEEE-------E-EEEEE------EECCSSCC--CCCEEECTTSC
T ss_pred EEEEEECCCCcC-----------------------cCcc-------E-EEEEc------CCCCCCcC--CceEEECCCCc
Confidence 666766532000 0000 0 00000 00011222 35689999998
Q ss_pred EEEEEeC-------------CCeEEEEeCCCC---------ceeEEeccCCcCeEEEEEcC-CCCEEEEEeCCC---cEE
Q 046871 231 LLVSGGT-------------EKVVRVWDPRTG---------SKTIKLRGHTDNIRSLLLDS-TGRYCLSGSSDS---MIR 284 (764)
Q Consensus 231 ~l~sgs~-------------dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~Dg---~I~ 284 (764)
+.++.+. .|.|.-++.... ..+. ..++. ....++|+| +|+++++-.... .|.
T Consensus 148 Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~ 225 (354)
T 3a9g_A 148 LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVN 225 (354)
T ss_dssp EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEE
T ss_pred EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEE
Confidence 7766432 256666665422 0121 12332 346899999 566544432221 233
Q ss_pred EEeCCC--------C--------eeeEEEeeecCceEEEEEc-------CCCCEEEEecCCCcEEEEeCCCC-eEE--EE
Q 046871 285 LWDLGQ--------Q--------RCIHSYAVHTDSVWALAST-------PTFSHVYSGGRDLSLYLTDLATR-ESL--LL 338 (764)
Q Consensus 285 iwdl~~--------~--------~~~~~l~~h~~~V~~l~~s-------pd~~~l~sgs~Dg~I~iwd~~~~-~~~--~~ 338 (764)
+..... + .++..+.........++|. .++.++++.-..+.|...++... ... ..
T Consensus 226 ~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~ 305 (354)
T 3a9g_A 226 IILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST 305 (354)
T ss_dssp EECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE
T ss_pred EecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee
Confidence 332111 0 1223331122356788883 46777777777788888888753 222 12
Q ss_pred -eec-CCCeEEEEeeCCc-eEEEeC
Q 046871 339 -CTG-EHPILQLALHDDN-IWVATT 360 (764)
Q Consensus 339 -~~~-~~~V~~l~~spd~-l~~~s~ 360 (764)
+.. ...+..+++.||+ |++++.
T Consensus 306 ~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 306 FFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp ECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eccCCCCCeeEEEECCCCcEEEEEe
Confidence 222 3578899999999 777764
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.23 E-value=0.0026 Score=73.52 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=119.4
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC----CceeEEeccCCcCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCC
Q 046871 218 ESVYALAMNDSGNLLVSG-GTEKVVRVWDPRT----GSKTIKLRGHTDNIRSLLLDSTGRY-CLSGSSDSMIRLWDLGQQ 291 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sg-s~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~spdg~~-l~sgs~Dg~I~iwdl~~~ 291 (764)
..+.+++|++.+..|+.. ...+.|+.+++.. ......+.........|++.+.+.. +++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 446688998866666554 4557899998875 2222222212233567888865444 444456788999998654
Q ss_pred eeeEEEeeecCceEEEEEcCCCCEEEEecC--CCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCCc--eEEEe-CCCcEE
Q 046871 292 RCIHSYAVHTDSVWALASTPTFSHVYSGGR--DLSLYLTDLATRESLLLCT-GEHPILQLALHDDN--IWVAT-TDSSVH 365 (764)
Q Consensus 292 ~~~~~l~~h~~~V~~l~~spd~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd~--l~~~s-~dg~I~ 365 (764)
.....+.........|+++|.+.+|+.+.. .+.|.++++.......+.. .-.....|++++++ |+.+. ..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 433333322345678899997666665543 2678888876443322222 22345689999875 65555 456888
Q ss_pred EeeCCCCCCceeeecCCcceeccccccccccccCCCCCcccCCCCCCccccCCCCceEeEEecCCcEEEEeeCCCcEEEE
Q 046871 366 RWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPVSSRFKEPNFTIPGIPGIVQHEILNNRRHVLTKDAAGSVKLW 445 (764)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~g~~~i~~~~~s~dg~~l~t~s~dG~V~lW 445 (764)
+++++.......+.... .......+++..+ +.+++....+.|..+
T Consensus 566 ~~d~dG~~~~~~~~~~~----------------------------------~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEK----------------------------------RLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp EECSSSSCCEEECCCSS----------------------------------SCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred EEccCCCceEEEEecCC----------------------------------cCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 88886532221111000 0001122334333 455565667899999
Q ss_pred EccccEEeeecC
Q 046871 446 EITRGVVVEDYG 457 (764)
Q Consensus 446 di~tg~~i~~~~ 457 (764)
|..+|+.++.+.
T Consensus 611 d~~~G~~~~~i~ 622 (699)
T 1n7d_A 611 NRLTGSDVNLLA 622 (699)
T ss_dssp ETTTEEEEECCC
T ss_pred EccCCCceEEee
Confidence 999999888773
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.20 E-value=0.24 Score=50.18 Aligned_cols=269 Identities=13% Similarity=0.171 Sum_probs=159.6
Q ss_pred cEEEEE---eCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCce
Q 046871 53 DYLFTG---SRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYV 129 (764)
Q Consensus 53 ~~L~sg---s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V 129 (764)
+|+..- +.+.+|.|-|+.+......+.+.+ -+..-+|...+++--...++.|+|++. ...+..+.- ...|
T Consensus 37 kyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~A-----dsAIMnP~~~ViALrag~~LQiFnlet-K~klks~~~-~e~V 109 (365)
T 2xzh_A 37 KFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKAGKTLQIFNIEM-KSKMKAHTM-TDDV 109 (365)
T ss_dssp TEEEEEEEETTEEEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEETTEEEEEETTT-TEEEEEEEC-SSCE
T ss_pred ceEEEEecCCCCCEEEEEECCCCCCcccccccc-----ceeeeCCCccEEEEecCCeEEEechHH-hhhhcceec-CCcc
Confidence 455442 333478899998744322222221 123346765444333478899999844 555555443 4567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCcc
Q 046871 130 TCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYV 209 (764)
Q Consensus 130 ~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 209 (764)
..=.|. +.+.|+-.+ +..|+-|++.....+.+. ++..
T Consensus 110 vfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kv-----------------------------------FdR~----- 146 (365)
T 2xzh_A 110 TFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKM-----------------------------------FDRH----- 146 (365)
T ss_dssp EEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEE-----------------------------------EECC-----
T ss_pred EEEEec--CCCeEEEEc-CCcEEEEcccCCCCCcee-----------------------------------eecc-----
Confidence 777887 344555544 346999999753222111 0000
Q ss_pred ceeccCCCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCC--C-CEEEEEeC
Q 046871 210 PIAAKGHKESVYALAMNDSGNLLVSGG-------TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDST--G-RYCLSGSS 279 (764)
Q Consensus 210 ~~~~~~~~~~V~~l~~sp~g~~l~sgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd--g-~~l~sgs~ 279 (764)
..+ ....|..-..+++.++++..+ -.|.+.+|..+. +.-+.+.||......+.+..+ . +.++.+..
T Consensus 147 -~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 147 -SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp -GGG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred -hhc--ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 001 135566777777777766433 236788999754 455667888665544433221 1 12332222
Q ss_pred ---CCcEEEEeCCCC---ee------eEEEe---eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-CC
Q 046871 280 ---DSMIRLWDLGQQ---RC------IHSYA---VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-EH 343 (764)
Q Consensus 280 ---Dg~I~iwdl~~~---~~------~~~l~---~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~ 343 (764)
.+.++|-++... .. +..+- ...+-..++..++....++.-+.-|.|++||+.++.++..-.- ..
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d 302 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 302 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC
Confidence 258999988432 11 11111 1234567888888888999999999999999999999876663 55
Q ss_pred CeEEEEeeCC--ceEEEeCCCcEEEeeCCCCCCc
Q 046871 344 PILQLALHDD--NIWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 344 ~V~~l~~spd--~l~~~s~dg~I~iwd~~~~~~~ 375 (764)
+|..-+.+.. |++.....|.|.--.++....+
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred ceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 6655555433 3888888998887777766544
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.00 E-value=0.089 Score=55.06 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=56.4
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeec---ccccceeEEEEeCC----CeEEEEeC-C----
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFE---SHVDWVNDAVLVGD----NTLVSCSS-D---- 104 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~---~h~~~V~~v~~s~d----~~l~s~s~-D---- 104 (764)
.-..|+| .|+|++++ +..+|.|++++ ++....+..+. ........|+|+|+ +.|+.+.. .
T Consensus 32 ~P~~ia~-----~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAF-----LPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEE-----CTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CceEEEE-----cCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 3568888 68998554 56679999998 32222222221 22456789999998 55544433 2
Q ss_pred -CcEEEecCCCCC----ee-eeecc---ccCCceEEEEEecCCCcEEEEEe
Q 046871 105 -TTLKTWNCSSDG----TC-IRTLR---QHSDYVTCLAAAEKNSNIVASGG 146 (764)
Q Consensus 105 -g~V~vWd~~~~~----~~-~~~l~---~h~~~V~~l~~~p~~~~~lasg~ 146 (764)
..|..++..... +. +..+. ........++|. +++.+.++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 567777763210 11 11122 111234578888 5676665543
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.97 E-value=0.041 Score=55.98 Aligned_cols=103 Identities=21% Similarity=0.197 Sum_probs=56.0
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeEE--eccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeeeE
Q 046871 228 SGNLLVSGGTE-----KVVRVWDPRTGSKTIK--LRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQRCIH 295 (764)
Q Consensus 228 ~g~~l~sgs~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~~~~~ 295 (764)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 46677777654 4588999887643322 2111112222333 56677777664 468999998765332
Q ss_pred EEeeec--CceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCe
Q 046871 296 SYAVHT--DSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRE 334 (764)
Q Consensus 296 ~l~~h~--~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~ 334 (764)
.-.... ....++.+ +++.++.|+.+ ..|.+||+.+.+
T Consensus 237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 211111 11122222 56666777655 357778877654
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.81 E-value=0.39 Score=50.11 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=126.4
Q ss_pred cceeEEEEeCCCe-EEEEeCCCcEEEecCCCCCeeeee---c----cccCCceEEEEEecC---CCcEEEEEeC------
Q 046871 85 DWVNDAVLVGDNT-LVSCSSDTTLKTWNCSSDGTCIRT---L----RQHSDYVTCLAAAEK---NSNIVASGGL------ 147 (764)
Q Consensus 85 ~~V~~v~~s~d~~-l~s~s~Dg~V~vWd~~~~~~~~~~---l----~~h~~~V~~l~~~p~---~~~~lasg~~------ 147 (764)
.....|+|.|++. |+.+...|.|++++. ++..... + .........|+++|. ++.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~--~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA--GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET--TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC--CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3467899999987 888888999999984 3332111 1 112345688999943 3444444332
Q ss_pred -CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEc
Q 046871 148 -GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMN 226 (764)
Q Consensus 148 -dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~s 226 (764)
...|..|++...... + .. ...++.... ......|. -..|+|.
T Consensus 96 ~~~~v~r~~~~~~~~~---------------------~--~~--------~~~i~~~~p----~~~~~~h~--~~~l~~~ 138 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSK---------------------V--TD--------FRTVFRQMP----KLSTGNHF--GGRLVFD 138 (353)
T ss_dssp EEEEEEEEEECTTSSB---------------------E--EE--------EEEEEECSS----CCBSSSCC--CCCEEEC
T ss_pred ceeEEEEEEECCCCCC---------------------C--Cc--------eEEEEEECC----CCCCCccc--CccEEEC
Confidence 224555555421000 0 00 000000000 00011232 2468999
Q ss_pred CCCCEEEEEeC-------------CCeEEEEeCCCCc------------eeEEe-ccCCcCeEEEEEcCCCCEEEEEeCC
Q 046871 227 DSGNLLVSGGT-------------EKVVRVWDPRTGS------------KTIKL-RGHTDNIRSLLLDSTGRYCLSGSSD 280 (764)
Q Consensus 227 p~g~~l~sgs~-------------dg~I~iwd~~~~~------------~~~~l-~~h~~~V~~l~~spdg~~l~sgs~D 280 (764)
|+|.+.++.+. .|.|.-+|....- ....+ .+| .....++|+|+...|.++...
T Consensus 139 pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 139 GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecC
Confidence 99976665433 2467777765320 11111 233 346789999943344444322
Q ss_pred C--cEEEEeCCCC-------------------------------eeeEEEeeecCceEEEEEcC-------CCCEEEEec
Q 046871 281 S--MIRLWDLGQQ-------------------------------RCIHSYAVHTDSVWALASTP-------TFSHVYSGG 320 (764)
Q Consensus 281 g--~I~iwdl~~~-------------------------------~~~~~l~~h~~~V~~l~~sp-------d~~~l~sgs 320 (764)
. .=.|.-+..+ .++..+. +...+..++|.. ++.++++.-
T Consensus 218 ~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~ 296 (353)
T 2g8s_A 218 PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL 296 (353)
T ss_dssp SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET
T ss_pred CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc
Confidence 1 1122211111 1122232 223567788753 467777777
Q ss_pred CCCcEEEEeCCCCeEEEE---eec-CCCeEEEEeeCCc-eEEEeCCCcEEEee
Q 046871 321 RDLSLYLTDLATRESLLL---CTG-EHPILQLALHDDN-IWVATTDSSVHRWP 368 (764)
Q Consensus 321 ~Dg~I~iwd~~~~~~~~~---~~~-~~~V~~l~~spd~-l~~~s~dg~I~iwd 368 (764)
..+.|...++..+..... +.. ...+..+++.||+ |++++.+..=+||.
T Consensus 297 ~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~r 349 (353)
T 2g8s_A 297 KDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLK 349 (353)
T ss_dssp TTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEE
T ss_pred cCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEE
Confidence 778888888876543322 112 3478999999999 88876533334443
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.80 E-value=0.065 Score=54.56 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCCEEEEEeCC-------CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCee
Q 046871 228 SGNLLVSGGTE-------KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQRC 293 (764)
Q Consensus 228 ~g~~l~sgs~d-------g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~~~ 293 (764)
++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 45666666542 358899988764322 12211112222323 56777777664 3688999877543
Q ss_pred eEEEeeecCce-EEEEEcCCCCEEEEecCCC-----cEEEEeCCCCe
Q 046871 294 IHSYAVHTDSV-WALASTPTFSHVYSGGRDL-----SLYLTDLATRE 334 (764)
Q Consensus 294 ~~~l~~h~~~V-~~l~~spd~~~l~sgs~Dg-----~I~iwd~~~~~ 334 (764)
...-....... .+++. -++++++.|+.++ .+.+||+.+.+
T Consensus 233 ~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 22211111110 11111 2556666666543 36667766543
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.70 E-value=0.62 Score=56.64 Aligned_cols=313 Identities=10% Similarity=0.028 Sum_probs=154.1
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCC----ccceeec----ccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCC-----
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDVG----SCSATFE----SHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDG----- 116 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~~----~~~~~l~----~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~----- 116 (764)
.++..++-+..+|.+..-.+..... ..+..++ +......++++..+|.|+.||..|.=.+|.+...+
T Consensus 284 ~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~ 363 (1158)
T 3ei3_A 284 PNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGS 363 (1158)
T ss_dssp TTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSC
T ss_pred cCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccc
Confidence 4556677777899988766543211 1122222 22334578888888999999988877777664322
Q ss_pred --eeeeeccccCCceEEEEEecC---CCcEEEEE-e--CCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 117 --TCIRTLRQHSDYVTCLAAAEK---NSNIVASG-G--LGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 117 --~~~~~l~~h~~~V~~l~~~p~---~~~~lasg-~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
..+..+. .-++|.+++.... +...++++ | .+|.+++..-.-..................+..... .....
T Consensus 364 ~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~-~~~~~ 441 (1158)
T 3ei3_A 364 YVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPN-RETDD 441 (1158)
T ss_dssp CEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSS-CSSCC
T ss_pred eEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCC-CCCCC
Confidence 2223332 3468888887632 12344444 3 356777664321100000000000000000000000 00000
Q ss_pred eeecCCCCcccccccCCCCcccee---ccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-cCeEE
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIA---AKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHT-DNIRS 264 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~ 264 (764)
....+..+...+............ +......+.+-.+ .+ ..++=... ..|++.+...+..+..+.... ..|..
T Consensus 442 yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l-~~-~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~ 518 (1158)
T 3ei3_A 442 TLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNV-AH-QQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISV 518 (1158)
T ss_dssp EEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEE-TT-TEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCE
T ss_pred EEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEc-CC-CeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEE
Confidence 011111111111110000000000 0001111222222 11 23333322 347777776666666665433 35777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEE-eeecCceEEEEEcCC------CCEEEEecC-CCcEEEEeCCCCeEE
Q 046871 265 LLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY-AVHTDSVWALASTPT------FSHVYSGGR-DLSLYLTDLATRESL 336 (764)
Q Consensus 265 l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l-~~h~~~V~~l~~spd------~~~l~sgs~-Dg~I~iwd~~~~~~~ 336 (764)
.+.+ +.+++.++ .+.+.++++..++..... ..-...|.|+++.|. +++++.|.. |++|+|+++.+.+.+
T Consensus 519 As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 519 ASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp EEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 6665 34666665 678888888765432211 123467999998753 468888886 999999999887666
Q ss_pred EEeec--CCCeEEEEee--CCc--eEEEeCCCcEEEeeCC
Q 046871 337 LLCTG--EHPILQLALH--DDN--IWVATTDSSVHRWPAE 370 (764)
Q Consensus 337 ~~~~~--~~~V~~l~~s--pd~--l~~~s~dg~I~iwd~~ 370 (764)
....- .....++.+. ... +.+|-.||.+..+.++
T Consensus 596 ~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 596 HKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred EEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 54433 2344444443 222 8889999988766654
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.64 E-value=0.09 Score=55.31 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=96.3
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccC----CcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------
Q 046871 225 MNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGH----TDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQR-------- 292 (764)
Q Consensus 225 ~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~-------- 292 (764)
...+|..++.+ .++.||..++.....-+.+... -+.|..+..+|+|++|+..+ +.+|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 34556666665 3478999888755444444322 23688899999999999885 5678898876321
Q ss_pred ----eeEEEee------ecCceEEEEEcCC---CCEEEEecCCCcEEEEeCCCCe--EEEEeec----------CCCeEE
Q 046871 293 ----CIHSYAV------HTDSVWALASTPT---FSHVYSGGRDLSLYLTDLATRE--SLLLCTG----------EHPILQ 347 (764)
Q Consensus 293 ----~~~~l~~------h~~~V~~l~~spd---~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~----------~~~V~~ 347 (764)
..+++.. ...+|..+.|||- +..|++-..|+.|++||+.... +. .+.. ...|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1223332 2467999999994 5689999999999999997521 22 2211 146889
Q ss_pred EEeeCCc--eEEEe--CCCcEEEe
Q 046871 348 LALHDDN--IWVAT--TDSSVHRW 367 (764)
Q Consensus 348 l~~spd~--l~~~s--~dg~I~iw 367 (764)
++|.+++ |++.+ .+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999988 88866 77887654
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.52 E-value=0.51 Score=49.25 Aligned_cols=61 Identities=8% Similarity=-0.016 Sum_probs=39.8
Q ss_pred cCeEEEEEc-------CCCCEEEEEeCCCcEEEEeCCCC-eee--EEEe-eecCceEEEEEcCCCCEEEEec
Q 046871 260 DNIRSLLLD-------STGRYCLSGSSDSMIRLWDLGQQ-RCI--HSYA-VHTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 260 ~~V~~l~~s-------pdg~~l~sgs~Dg~I~iwdl~~~-~~~--~~l~-~h~~~V~~l~~spd~~~l~sgs 320 (764)
.....++|. .+|+++++....+.|...++... +.. ..+- .....+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 456788883 56777777667778888888653 322 2221 1234688999999997666553
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.51 E-value=0.15 Score=52.01 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCCEEEEEeC---------CCeEEEEeCCCCceeEE--eccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 046871 228 SGNLLVSGGT---------EKVVRVWDPRTGSKTIK--LRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQ 291 (764)
Q Consensus 228 ~g~~l~sgs~---------dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~ 291 (764)
++.+++.|+. -..+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 4566666653 34588999887643221 1111112222223 56677777654 35889998775
Q ss_pred eeeE--EEeeecCceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCe
Q 046871 292 RCIH--SYAVHTDSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRE 334 (764)
Q Consensus 292 ~~~~--~l~~h~~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~ 334 (764)
+-.. .+........++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 4221 11111112222223 55667777754 356777776654
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.42 E-value=0.15 Score=51.78 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCc---eeE--EeccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 046871 228 SGNLLVSGGTE-----KVVRVWDPRTGS---KTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQR 292 (764)
Q Consensus 228 ~g~~l~sgs~d-----g~I~iwd~~~~~---~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~~ 292 (764)
++.+++.|+.+ ..+.+||+.+.+ -.. .+........++.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 46677777754 468999988765 222 22211122222323 56677777654 358899987765
Q ss_pred eeEEEeeec--CceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc-eEEEeCC-
Q 046871 293 CIHSYAVHT--DSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRESLLLCTG--EHPILQLALHDDN-IWVATTD- 361 (764)
Q Consensus 293 ~~~~l~~h~--~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~-l~~~s~d- 361 (764)
-...-.... ....++.+ +++.++.|+.+ ..+.+||+.+.+-...-.. ...-.+++...+. ++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence 332211111 11122222 56677777754 4588999887754333221 1112233334444 4444443
Q ss_pred ----CcEEEeeCCCC
Q 046871 362 ----SSVHRWPAEGR 372 (764)
Q Consensus 362 ----g~I~iwd~~~~ 372 (764)
..+.+||+.+.
T Consensus 218 ~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTD 232 (301)
T ss_dssp SSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCC
Confidence 45777777654
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.42 E-value=1.1 Score=46.50 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=69.8
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEe-C
Q 046871 218 ESVYALAMNDSGNLLVSGG-----------------TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-S 279 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs-----------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~ 279 (764)
.....+++.++|.+.++.. ..|.|..+|.. + +..+...-..-+.|+|+||+++|+.+. .
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCC
Confidence 3567888888888777654 13566666653 2 222222334568999999999877664 5
Q ss_pred CCcEEEEeCCC-Cee--eEEEeeecCceEEEEEcC-CCCEEEEecCC-CcEEEEeCC
Q 046871 280 DSMIRLWDLGQ-QRC--IHSYAVHTDSVWALASTP-TFSHVYSGGRD-LSLYLTDLA 331 (764)
Q Consensus 280 Dg~I~iwdl~~-~~~--~~~l~~h~~~V~~l~~sp-d~~~l~sgs~D-g~I~iwd~~ 331 (764)
.+.|..|++.. ++. ...+ ...+..-.+++++ +|++.+++..+ +.|..|+..
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 78899999863 322 2234 2245567889998 58877766533 345445443
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.36 E-value=1.3 Score=46.67 Aligned_cols=270 Identities=13% Similarity=0.160 Sum_probs=161.2
Q ss_pred CcEEEEE---eCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCc
Q 046871 52 VDYLFTG---SRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDY 128 (764)
Q Consensus 52 ~~~L~sg---s~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~ 128 (764)
.+|+..- +.+..|.|-|+.+......+.+.+ -+..-+|...+++--...++.|+|++. ...+..+.- ...
T Consensus 35 DkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALrag~~lQiFnle~-K~klks~~~-~e~ 107 (494)
T 1bpo_A 35 DKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKAGKTLQIFNIEM-KSKMKAHTM-TDD 107 (494)
T ss_dssp TTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEETTEEEEEETTT-TEEEEEEEC-SSC
T ss_pred CceEEEEecCCCCCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEecCCeEEEEchHH-hhhhcceec-CCC
Confidence 3455543 233478899998743322222221 123445665333333478999999843 555555443 345
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCc
Q 046871 129 VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGY 208 (764)
Q Consensus 129 V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 208 (764)
|..-.|. +.+.|+..+ +..|+-|++.....+.+. ++..
T Consensus 108 VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kv-----------------------------------FdR~---- 145 (494)
T 1bpo_A 108 VTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKM-----------------------------------FDRH---- 145 (494)
T ss_dssp CCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEE-----------------------------------EECC----
T ss_pred ceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhh-----------------------------------eecc----
Confidence 6677776 245555554 456999999753222111 0000
Q ss_pred cceeccCCCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCC---CEEEEEe
Q 046871 209 VPIAAKGHKESVYALAMNDSGNLLVSGG-------TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTG---RYCLSGS 278 (764)
Q Consensus 209 ~~~~~~~~~~~V~~l~~sp~g~~l~sgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~sgs 278 (764)
..+ ....|..-..+++.++++..+ -.|.+.+|..+. +.-..+.||......+.+..+. ..++.+.
T Consensus 146 --~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 146 --SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp --GGG--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred --hhc--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 001 135567777778888766433 246788999764 4556678887666555443221 2333333
Q ss_pred C---CCcEEEEeCCCC---ee---eEEEe------eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeec-C
Q 046871 279 S---DSMIRLWDLGQQ---RC---IHSYA------VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTG-E 342 (764)
Q Consensus 279 ~---Dg~I~iwdl~~~---~~---~~~l~------~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~ 342 (764)
. .+.++|-++... .. .+... .-.+-..++..++....++.-+.-|.|++||+.++.++..-.- .
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~ 300 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC
Confidence 3 278999998542 11 11111 1234467888899889999999999999999999998876653 5
Q ss_pred CCeEEEEeeCC--ceEEEeCCCcEEEeeCCCCCCc
Q 046871 343 HPILQLALHDD--NIWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 343 ~~V~~l~~spd--~l~~~s~dg~I~iwd~~~~~~~ 375 (764)
.+|..-+.+.. |++.....|.|.--.++....+
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 56655555443 3888888888877777766544
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.34 E-value=0.64 Score=48.31 Aligned_cols=149 Identities=11% Similarity=0.151 Sum_probs=86.6
Q ss_pred cEEEEEEcC--CCC--EEEEEeC--CCeEEEEeCCCCc----eeEEeccC-CcCeEEEEEcCCCCEEEEEeC--------
Q 046871 219 SVYALAMND--SGN--LLVSGGT--EKVVRVWDPRTGS----KTIKLRGH-TDNIRSLLLDSTGRYCLSGSS-------- 279 (764)
Q Consensus 219 ~V~~l~~sp--~g~--~l~sgs~--dg~I~iwd~~~~~----~~~~l~~h-~~~V~~l~~spdg~~l~sgs~-------- 279 (764)
....+.+.+ ++. ++++-.. +..|.+|++.... .+..+.+. -...+.+.+.++|++.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 344555544 343 3333332 4677787765432 22233332 235789999999987776541
Q ss_pred ---------CCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCC-CeE--EEEeecCCCeE
Q 046871 280 ---------DSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLAT-RES--LLLCTGEHPIL 346 (764)
Q Consensus 280 ---------Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~-~~~--~~~~~~~~~V~ 346 (764)
.|.|..+|. ++ +..+...-...+.++|+||++.|+.+. ..+.|+.|++.. +.. ...+......-
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PD 269 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVD 269 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEE
T ss_pred cchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCc
Confidence 244555554 33 233333345678999999998887654 568899999863 322 22333345567
Q ss_pred EEEeeC-Cc-eEEEeC-C-CcEEEeeCC
Q 046871 347 QLALHD-DN-IWVATT-D-SSVHRWPAE 370 (764)
Q Consensus 347 ~l~~sp-d~-l~~~s~-d-g~I~iwd~~ 370 (764)
.+++.+ +| +|+++. + +.|..|+.+
T Consensus 270 Gi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 270 NISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 788888 47 777553 3 344444433
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.31 E-value=1.2 Score=46.43 Aligned_cols=66 Identities=5% Similarity=0.025 Sum_probs=42.6
Q ss_pred cCeEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeeeEEEe---eecCceEEEEEcCCCCEEEEec-CCCcE
Q 046871 260 DNIRSLLLDS-------TGRYCLSGSSDSMIRLWDLGQQRCIHSYA---VHTDSVWALASTPTFSHVYSGG-RDLSL 325 (764)
Q Consensus 260 ~~V~~l~~sp-------dg~~l~sgs~Dg~I~iwdl~~~~~~~~l~---~h~~~V~~l~~spd~~~l~sgs-~Dg~I 325 (764)
.....+.|.. +|+++++....+.|...++..++...... .....+..+++.|||.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3567778764 46777777677888888887655443322 2234789999999998666433 34443
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.12 E-value=0.26 Score=50.15 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeeeE
Q 046871 228 SGNLLVSGGTE-----KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQRCIH 295 (764)
Q Consensus 228 ~g~~l~sgs~d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~~~~~ 295 (764)
++.+++.|+.+ ..+.+||+.+.+-.. .+........++.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 46677777654 458899987764322 11111112223333 56777777664 468999987764322
Q ss_pred E--EeeecCceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCe
Q 046871 296 S--YAVHTDSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRE 334 (764)
Q Consensus 296 ~--l~~h~~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~ 334 (764)
. +.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 246 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 246 VAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 1111111122222 45666677654 346677766554
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.05 E-value=0.26 Score=49.98 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=71.3
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeeeE
Q 046871 228 SGNLLVSGGTE-----KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSDS-----MIRLWDLGQQRCIH 295 (764)
Q Consensus 228 ~g~~l~sgs~d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~Dg-----~I~iwdl~~~~~~~ 295 (764)
++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ +++.++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 46677777654 358899988764322 12211112222223 566777776553 47888987765332
Q ss_pred E--EeeecCceEEEEEcCCCCEEEEecCC-------CcEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc-eEEEeCC--
Q 046871 296 S--YAVHTDSVWALASTPTFSHVYSGGRD-------LSLYLTDLATRESLLLCT--GEHPILQLALHDDN-IWVATTD-- 361 (764)
Q Consensus 296 ~--l~~h~~~V~~l~~spd~~~l~sgs~D-------g~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~-l~~~s~d-- 361 (764)
. +.........+.+ +++.++.|+.+ ..+.+||+.+.+-...-. ....-.+++...+. ++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP 216 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS
T ss_pred cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC
Confidence 2 1111111122222 55666666643 358899988765433221 11112233444444 4444443
Q ss_pred ---CcEEEeeCCCC
Q 046871 362 ---SSVHRWPAEGR 372 (764)
Q Consensus 362 ---g~I~iwd~~~~ 372 (764)
..+.+||+.+.
T Consensus 217 ~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 217 LVRKSVEVYDPTTN 230 (302)
T ss_dssp SBCCCEEEEETTTT
T ss_pred cccceEEEEeCCCC
Confidence 35677776654
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.86 E-value=0.39 Score=49.01 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=35.9
Q ss_pred CCCEEEEEeC-C-----CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCe
Q 046871 228 SGNLLVSGGT-E-----KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSDS-----MIRLWDLGQQR 292 (764)
Q Consensus 228 ~g~~l~sgs~-d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~Dg-----~I~iwdl~~~~ 292 (764)
++++++.|+. + ..+.+||+.+.+-.. .+........++.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 3566777765 2 468899988764222 12111112222333 567777777654 48889987764
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.027 Score=58.19 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=87.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccC-CcCeEEEEE--cC-CCCEEEEE-eCCCcEEEEeCCCCeeeEEEeee---
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGH-TDNIRSLLL--DS-TGRYCLSG-SSDSMIRLWDLGQQRCIHSYAVH--- 300 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~sg-s~Dg~I~iwdl~~~~~~~~l~~h--- 300 (764)
+.+++.++.||.|.-+|..+|+.+.++... ..++....- .+ ++..++.. +.||.|..++..+|.....+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 357889999999999999999999998754 122222110 01 22333333 68999999999888655544321
Q ss_pred -cCceEE---EEE-c----CCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCe--------EEEEe------eCCc-eE
Q 046871 301 -TDSVWA---LAS-T----PTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPI--------LQLAL------HDDN-IW 356 (764)
Q Consensus 301 -~~~V~~---l~~-s----pd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V--------~~l~~------spd~-l~ 356 (764)
..++.. ... . -.+..+++|+.+|.+...|+.+|+.+..+....+. .|... ..++ ++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 112211 000 0 14568899999999999999999999988754321 11111 1123 77
Q ss_pred EEeCCCcEEEee
Q 046871 357 VATTDSSVHRWP 368 (764)
Q Consensus 357 ~~s~dg~I~iwd 368 (764)
.+..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 777777776666
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.81 E-value=0.67 Score=46.91 Aligned_cols=141 Identities=17% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeeeE
Q 046871 228 SGNLLVSGGTE----KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD------SMIRLWDLGQQRCIH 295 (764)
Q Consensus 228 ~g~~l~sgs~d----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D------g~I~iwdl~~~~~~~ 295 (764)
++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 46677777754 678899988764322 22211122222333 56777777765 458899988765332
Q ss_pred EEeeec--CceEEEEEcCCCCEEEEecC---------CCcEEEEeCCCCeEEEEeec--CCCeEEEEeeCCc-eEEEeCC
Q 046871 296 SYAVHT--DSVWALASTPTFSHVYSGGR---------DLSLYLTDLATRESLLLCTG--EHPILQLALHDDN-IWVATTD 361 (764)
Q Consensus 296 ~l~~h~--~~V~~l~~spd~~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~--~~~V~~l~~spd~-l~~~s~d 361 (764)
.-.... .....+.+ ++++++.|+. -..+.+||+.+..-...-.. ...-.+++...+. ++.|+.+
T Consensus 133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 211111 11122222 5566666654 34588999987753333221 1112233344444 3444332
Q ss_pred -----CcEEEeeCCCC
Q 046871 362 -----SSVHRWPAEGR 372 (764)
Q Consensus 362 -----g~I~iwd~~~~ 372 (764)
..+.+||+.+.
T Consensus 211 ~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEBCCEEEEETTTT
T ss_pred CCCCCceEEEeeCCCC
Confidence 35677776654
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.60 E-value=0.44 Score=57.72 Aligned_cols=235 Identities=9% Similarity=0.161 Sum_probs=129.6
Q ss_pred ccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeecccc--
Q 046871 48 VSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQH-- 125 (764)
Q Consensus 48 ~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h-- 125 (764)
.+|..+.||.=. ..++.|+|+++. ..+..+.- ...|.-=.|..+..|+..+ +..|.-|++..+..+.+.+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHh--hhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 467777777654 578999999873 23333332 2345555666666554444 3569999986555666666666
Q ss_pred --CCceEEEEEecCCCcEEEEEeC-------CCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 126 --SDYVTCLAAAEKNSNIVASGGL-------GAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 126 --~~~V~~l~~~p~~~~~lasg~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
...|..-..+ ++.++++..|- .|.+.+|..+........ .+ ...+
T Consensus 148 L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie--gh-------------a~~F---------- 201 (1630)
T 1xi4_A 148 LAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE--GH-------------AASF---------- 201 (1630)
T ss_pred cccCeeEEeeeC-CCCCeEEEEeeccCCCcccceeeeeecccccchhhh--Hh-------------Hhhh----------
Confidence 3456666666 66777775543 367777777653111000 00 0000
Q ss_pred cccccccCCCCccceecc--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeE-----E-ec---cCCcCe
Q 046871 197 SISAHTSQSQGYVPIAAK--GHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG---SKTI-----K-LR---GHTDNI 262 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~--~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~---~~~~-----~-l~---~h~~~V 262 (764)
....+. .+...+.|.+.-.. ..+.++|.++... .... . +. ...+-.
T Consensus 202 ------------~~~~~~~~~~~~~l~~f~~~~~--------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp 261 (1630)
T 1xi4_A 202 ------------AQFKMEGNAEESTLFCFAVRGQ--------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (1630)
T ss_pred ------------heeccCCCCCCceEEEEEEecC--------CCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence 000011 11222333332210 1257777776432 1111 1 11 123444
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 046871 263 RSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR 333 (764)
Q Consensus 263 ~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~ 333 (764)
.++..++.-..+..-+.-|.|.+||+.++.++..-+...+.|...+.+....-+++..+.|.|.-..+...
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 57778887788888889999999999999998776655555555444433333444445565555544443
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.51 E-value=0.86 Score=49.27 Aligned_cols=104 Identities=12% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEecc------CCcCeEEEEEcCC---CCEEEEEeC------
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT--IKLRG------HTDNIRSLLLDST---GRYCLSGSS------ 279 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~--~~l~~------h~~~V~~l~~spd---g~~l~sgs~------ 279 (764)
-....+|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +.+|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999997776554457999987656432 22221 2456779999996 555554432
Q ss_pred -------CCcEEEEeCCCC--e-----eeEE-Eee-ecCceEEEEEcCCCCEEEEec
Q 046871 280 -------DSMIRLWDLGQQ--R-----CIHS-YAV-HTDSVWALASTPTFSHVYSGG 320 (764)
Q Consensus 280 -------Dg~I~iwdl~~~--~-----~~~~-l~~-h~~~V~~l~~spd~~~l~sgs 320 (764)
...|.-|++... + .+.. +.. .......|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554321 1 1111 211 112368999999998777654
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.48 E-value=0.55 Score=47.89 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=72.3
Q ss_pred CCCEEEEEeCC--------CeEEEEeCCCCcee--EEeccCCcCeEEEEEcCCCCEEEEEeC-C-----CcEEEEeCCCC
Q 046871 228 SGNLLVSGGTE--------KVVRVWDPRTGSKT--IKLRGHTDNIRSLLLDSTGRYCLSGSS-D-----SMIRLWDLGQQ 291 (764)
Q Consensus 228 ~g~~l~sgs~d--------g~I~iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~-D-----g~I~iwdl~~~ 291 (764)
++.+++.|+.+ ..+.+||+.+.+-. ..+........++. -+++.++.|+. + ..+.+||+.+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 45666676632 35889998876422 12221111222222 35667777765 2 46899998775
Q ss_pred eeeEE--EeeecCceEEEEEcCCCCEEEEecCCC-----cEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc-eEEEeCC
Q 046871 292 RCIHS--YAVHTDSVWALASTPTFSHVYSGGRDL-----SLYLTDLATRESLLLCT--GEHPILQLALHDDN-IWVATTD 361 (764)
Q Consensus 292 ~~~~~--l~~h~~~V~~l~~spd~~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~-l~~~s~d 361 (764)
+-... +........++.+ ++++++.|+.++ .+.+||+.+.+-...-. ....-.+++...+. ++.|+.+
T Consensus 176 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEE
T ss_pred eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCcc
Confidence 43221 1111111122222 566777777654 58889998765433322 11112233444445 4555542
Q ss_pred --------------CcEEEeeCCCCC
Q 046871 362 --------------SSVHRWPAEGRN 373 (764)
Q Consensus 362 --------------g~I~iwd~~~~~ 373 (764)
..+.+||+.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 254 TLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ccCcCCccccccccCcEEEecCCCCh
Confidence 246677776654
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.39 E-value=0.63 Score=48.99 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=72.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEeee----cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe-------
Q 046871 266 LLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVH----TDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE------- 334 (764)
Q Consensus 266 ~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~h----~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~------- 334 (764)
....+|..++.+- ++.||.-++.....-+.+... -+.|..+..+|+|++|+..+ +..|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 3445666666553 577887777644444455432 23578899999999999876 4578888776221
Q ss_pred -----EEEEee-------cCCCeEEEEeeCCc-----eEEEeCCCcEEEeeCCC
Q 046871 335 -----SLLLCT-------GEHPILQLALHDDN-----IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 335 -----~~~~~~-------~~~~V~~l~~spd~-----l~~~s~dg~I~iwd~~~ 371 (764)
....+. ...+|.++.|||-+ |++-+.|+.|++||+..
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111222 14679999999987 99999999999999986
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.38 E-value=0.49 Score=48.31 Aligned_cols=63 Identities=16% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCCEEEEEeC------CCeEEEEeCCCCceeEE--eccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 046871 228 SGNLLVSGGT------EKVVRVWDPRTGSKTIK--LRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQR 292 (764)
Q Consensus 228 ~g~~l~sgs~------dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~~ 292 (764)
++.+++.|+. -..+.+||+.+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 4666677654 23589999987643221 2111111222222 56677777643 347788887654
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.28 E-value=2.9 Score=42.29 Aligned_cols=137 Identities=7% Similarity=0.003 Sum_probs=77.3
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeeEEEeee
Q 046871 224 AMNDSGNLLVSGGT-EKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSD--SMIRLWDLGQQRCIHSYAVH 300 (764)
Q Consensus 224 ~~sp~g~~l~sgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D--g~I~iwdl~~~~~~~~l~~h 300 (764)
+++++++.|+-.+. ...|.+.++..+.....+. +... ..+.|++.+|+-...+ ..|..-++.... ...+.
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-- 223 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-- 223 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--
Confidence 45667777776654 5678888887665443333 2222 3466889888766543 356666664433 33443
Q ss_pred cCceEEEEEcCCCCEEEEec--CCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceE-EEeCCCcEEEeeCCC
Q 046871 301 TDSVWALASTPTFSHVYSGG--RDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIW-VATTDSSVHRWPAEG 371 (764)
Q Consensus 301 ~~~V~~l~~spd~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~-~~s~dg~I~iwd~~~ 371 (764)
...+ ..++|++.+|+-++ ..+.|..-++.......+... .+..+....+.|+ +--..+.|..-+++.
T Consensus 224 ~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 224 EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNINVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEEEECSSEEEEEETTTCCEEEEESSS
T ss_pred CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceEEEeCCEEEEEECCCCeEEEEECCC
Confidence 2223 33778888887542 346777777765544433332 3456666655543 333445555545443
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.27 E-value=0.061 Score=51.29 Aligned_cols=138 Identities=12% Similarity=0.020 Sum_probs=82.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------EEe--ccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT------IKL--RGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ 290 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~------~~l--~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~ 290 (764)
.+..++|+|+|.+.++ .+|.+.-.+..+.... ..+ .+-. .-.++.|.++|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999986666 7788887777553221 111 0111 2478999999987777 569998887633
Q ss_pred Ceee------EEE-eeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCe------EEEEee--cCCCeEEEEeeCCc-
Q 046871 291 QRCI------HSY-AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE------SLLLCT--GEHPILQLALHDDN- 354 (764)
Q Consensus 291 ~~~~------~~l-~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~------~~~~~~--~~~~V~~l~~spd~- 354 (764)
...- ..+ +.-=..+..|.|.|+|.+.+.. |+.++.....++. ....+. .-+....+.|.+++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 2111 011 1011457899999999766555 7776554433221 011111 12234557789998
Q ss_pred eEEEeCCCcE
Q 046871 355 IWVATTDSSV 364 (764)
Q Consensus 355 l~~~s~dg~I 364 (764)
|+.+. ++.+
T Consensus 195 l~~v~-~g~~ 203 (236)
T 1tl2_A 195 LFGVQ-GGKF 203 (236)
T ss_dssp EEEEE-TTEE
T ss_pred EEEEe-CCeE
Confidence 66666 6633
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.11 E-value=1.3 Score=45.86 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=84.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEe----ccCCcCeEEEEEcCC---CCEEEEE---eCCCcEE
Q 046871 217 KESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKT--IKL----RGHTDNIRSLLLDST---GRYCLSG---SSDSMIR 284 (764)
Q Consensus 217 ~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~--~~l----~~h~~~V~~l~~spd---g~~l~sg---s~Dg~I~ 284 (764)
-...+.|+|.|+|.++++--..|.|++++..+++.. ..+ .........|+++|+ +.+|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 455789999999997777655899999987666542 222 123457889999995 3445433 2345566
Q ss_pred EEeCCCC----------eeeE-EEee-ecCceEEEEEcCCCCEEEEecC-------------CCcEEEEeCCCC------
Q 046871 285 LWDLGQQ----------RCIH-SYAV-HTDSVWALASTPTFSHVYSGGR-------------DLSLYLTDLATR------ 333 (764)
Q Consensus 285 iwdl~~~----------~~~~-~l~~-h~~~V~~l~~spd~~~l~sgs~-------------Dg~I~iwd~~~~------ 333 (764)
-|.+..+ +.+. .+.. ....-..|+|.|||.+.++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665431 1111 1211 1112357999999987777542 355555555432
Q ss_pred ---eEEEEeecCCCeEEEEeeCCc-eEEEeC
Q 046871 334 ---ESLLLCTGEHPILQLALHDDN-IWVATT 360 (764)
Q Consensus 334 ---~~~~~~~~~~~V~~l~~spd~-l~~~s~ 360 (764)
..+... .......++|+|++ |+++-.
T Consensus 191 f~~~~i~a~-G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 191 FPGSPVYSY-GHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp STTCCEEEB-CCSBCCEEEECTTCCEEEEEC
T ss_pred CCCCeEEee-CCCCcceEEECCCCCEEEEec
Confidence 112222 22345688999987 777654
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.97 E-value=1.9 Score=43.72 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=70.0
Q ss_pred CCCCEEEEEeC----CC-------eEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC-------CcEEEE
Q 046871 227 DSGNLLVSGGT----EK-------VVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD-------SMIRLW 286 (764)
Q Consensus 227 p~g~~l~sgs~----dg-------~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D-------g~I~iw 286 (764)
.++.+++.|+. ++ .+.+||+.+.+-.. .+.........+.+ +++.++.|+.+ ..+.+|
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEE
Confidence 45777888873 11 27788987764322 11111111222222 56667777654 248888
Q ss_pred eCCCCeeeEEEeeecCce-EEEEEcCCCCEEEEecC------CCcEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc-eE
Q 046871 287 DLGQQRCIHSYAVHTDSV-WALASTPTFSHVYSGGR------DLSLYLTDLATRESLLLCT--GEHPILQLALHDDN-IW 356 (764)
Q Consensus 287 dl~~~~~~~~l~~h~~~V-~~l~~spd~~~l~sgs~------Dg~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~-l~ 356 (764)
|+.+.+-...-....... .+++. .++++++.|+. -..+.+||+.+.+-...-. ....-.+++...+. ++
T Consensus 133 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 211 (318)
T 2woz_A 133 DPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVI 211 (318)
T ss_dssp ETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred eCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEE
Confidence 987764332211111000 11222 35666666664 2358999998775333222 11112233444445 44
Q ss_pred EEeCC-----CcEEEeeCCCC
Q 046871 357 VATTD-----SSVHRWPAEGR 372 (764)
Q Consensus 357 ~~s~d-----g~I~iwd~~~~ 372 (764)
.|+.+ ..+.+||+.+.
T Consensus 212 ~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 212 AGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEETTEEEEEEEEEETTTC
T ss_pred EcCcCCCCccceEEEEECCCC
Confidence 45432 34667776654
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.95 E-value=0.59 Score=47.46 Aligned_cols=141 Identities=15% Similarity=0.115 Sum_probs=70.9
Q ss_pred CCCEEEEEeC----C-----CeEEEEeCCCCceeE--EeccCCcCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 046871 228 SGNLLVSGGT----E-----KVVRVWDPRTGSKTI--KLRGHTDNIRSLLLDSTGRYCLSGSSD-----SMIRLWDLGQQ 291 (764)
Q Consensus 228 ~g~~l~sgs~----d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwdl~~~ 291 (764)
++.+++.|+. + ..+.+||+.+.+-.. .+.........+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4566666665 2 358889987764222 12211122222333 56677776643 35888998776
Q ss_pred eeeEE--EeeecCceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCeEEEEee--cCCCeEEEEeeCCc-eEEEeCC
Q 046871 292 RCIHS--YAVHTDSVWALASTPTFSHVYSGGRD-----LSLYLTDLATRESLLLCT--GEHPILQLALHDDN-IWVATTD 361 (764)
Q Consensus 292 ~~~~~--l~~h~~~V~~l~~spd~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~--~~~~V~~l~~spd~-l~~~s~d 361 (764)
+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-. ....-.+++...+. ++.|+.+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCC
Confidence 43221 1111111122222 56666777654 458899988765332221 11112233334444 4444443
Q ss_pred -----CcEEEeeCCCC
Q 046871 362 -----SSVHRWPAEGR 372 (764)
Q Consensus 362 -----g~I~iwd~~~~ 372 (764)
..+.+||+.+.
T Consensus 226 ~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 226 GQDQLNSVERYDVETE 241 (308)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCCccceEEEEeCCCC
Confidence 45777777654
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.14 Score=52.83 Aligned_cols=114 Identities=11% Similarity=-0.026 Sum_probs=64.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCc--C-----eEEEEEc-----CCCCEEEEEeCCCcEEEEeCCCCeeeEE
Q 046871 229 GNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTD--N-----IRSLLLD-----STGRYCLSGSSDSMIRLWDLGQQRCIHS 296 (764)
Q Consensus 229 g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~-----V~~l~~s-----pdg~~l~sgs~Dg~I~iwdl~~~~~~~~ 296 (764)
+..+++|+.+|.+...|+++|+.+.++..... . ..|.... ..+..++.+..+..+.+.+ ++|+ +..
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~ 188 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYN 188 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCC
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEE
Confidence 56789999999999999999999998864311 0 1111111 1245677777777777766 4443 222
Q ss_pred Eeeec--C-ceE-----EEEEcCCCCEEEEecCCCcEEEEeCCCCeEEE-EeecCCCe
Q 046871 297 YAVHT--D-SVW-----ALASTPTFSHVYSGGRDLSLYLTDLATRESLL-LCTGEHPI 345 (764)
Q Consensus 297 l~~h~--~-~V~-----~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V 345 (764)
++... . .+. .-..+.|+.+ +.++.||.|..+|..+|..+. ......++
T Consensus 189 ~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~~l~sPv 245 (339)
T 2be1_A 189 VTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVSPTFPGII 245 (339)
T ss_dssp CEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEECCCCSSCE
T ss_pred EecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEeecCCCCe
Confidence 21100 0 000 0000123555 446788899988888888765 33334443
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.78 E-value=4.4 Score=41.78 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=59.6
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceee----cccccceeEEEEeCC----CeEEEE---eCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATF----ESHVDWVNDAVLVGD----NTLVSC---SSDT 105 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l----~~h~~~V~~v~~s~d----~~l~s~---s~Dg 105 (764)
.-..|+| .|||.++++--..|.|++++...+....+..+ .........|+++|+ +.|..+ ..+.
T Consensus 33 ~P~~ia~-----~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 33 SPWGLAP-----LPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp SEEEEEE-----CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CceEEEE-----cCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 4678888 68998777665489999998655332222222 223566889999985 554433 2345
Q ss_pred cEEEecCCCC---------Cee-eeecc-ccCCceEEEEEecCCCcEEEEEeC
Q 046871 106 TLKTWNCSSD---------GTC-IRTLR-QHSDYVTCLAAAEKNSNIVASGGL 147 (764)
Q Consensus 106 ~V~vWd~~~~---------~~~-~~~l~-~h~~~V~~l~~~p~~~~~lasg~~ 147 (764)
.|.-|.+... .+. +..+. ........|+|. +++.+.++.+.
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd 159 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGE 159 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBC
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECC
Confidence 5655654321 111 11121 112234578888 56776666553
No 339
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=94.71 E-value=0.11 Score=43.70 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 046871 634 ENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRS 713 (764)
Q Consensus 634 ~~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
-+.||+-++..+.++.+|.+.+.|.-.++=+.|-.++..|..+|.+.
T Consensus 24 ~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~--------------------------------- 70 (110)
T 2r2q_A 24 YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLR--------------------------------- 70 (110)
T ss_dssp CTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCC---------------------------------
T ss_pred CCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCC---------------------------------
Confidence 35799999999998888899999999998899999999999999432
Q ss_pred CcccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEE
Q 046871 714 GLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYR 759 (764)
Q Consensus 714 ~~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~ 759 (764)
+++.|=|+||+.+.+++++++.+=.-+=-.-|-|.++|.
T Consensus 71 -------~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 71 -------PEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp -------TTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred -------CCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 133455899999889999999986655224667999985
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.69 E-value=2.9 Score=50.85 Aligned_cols=262 Identities=14% Similarity=0.164 Sum_probs=147.9
Q ss_pred CCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeeccccCCceEEEEEecCCC
Q 046871 60 RDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNS 139 (764)
Q Consensus 60 ~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h~~~V~~l~~~p~~~ 139 (764)
...+|.|-|+.++.....+.+.+ -+..-+|...+++--...++.|+|+.. ...+..+.- ...|..-.|. . .
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~A-----dsAIMnP~~~iiALrag~~lQiFnl~~-k~klks~~~-~e~VvfWkWi-s-~ 116 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKAGKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWI-S-L 116 (1630)
T ss_pred CCceEEEEECCCCCCcccccccc-----hhhccCCCcceEEEecCCeEEEeehHH-hhhhccccc-CCCceEEEec-C-C
Confidence 34478899988743221111221 122335665455444578999999843 334444432 3457677776 2 4
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCc
Q 046871 140 NIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKES 219 (764)
Q Consensus 140 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 219 (764)
+.|+..+ +..|.-|++.+...+.+..+.. ..+. ...
T Consensus 117 ~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~-----------------------------------------~~L~--~~Q 152 (1630)
T 1xi4_A 117 NTVALVT-DNAVYHWSMEGESQPVKMFDRH-----------------------------------------SSLA--GCQ 152 (1630)
T ss_pred CeeEEEc-CCeEEEeccCCCCccHHHHhcc-----------------------------------------hhcc--cCe
Confidence 4444443 3469999997532222111100 0011 344
Q ss_pred EEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCceeEEeccCCcCeEEEEEcC--CCCEEEE-EeC---CCcEEEE
Q 046871 220 VYALAMNDSGNLLVSGG-------TEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDS--TGRYCLS-GSS---DSMIRLW 286 (764)
Q Consensus 220 V~~l~~sp~g~~l~sgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l~s-gs~---Dg~I~iw 286 (764)
|..-..+++.++++..| -.|.+.+|..+.+ ....+.||.+....+.+.. ....|++ +.. .+.++|-
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~ 231 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEE
Confidence 66666677777766432 3578899987643 3445667766554444321 1122222 211 2688888
Q ss_pred eCCCC---eeeE------EEe---eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEEeeCC
Q 046871 287 DLGQQ---RCIH------SYA---VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLALHDD 353 (764)
Q Consensus 287 dl~~~---~~~~------~l~---~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~~spd 353 (764)
++... .... .+- ...+-..++..++....++..+.-|.|.++|+.++.++..-. ...+|...+.+..
T Consensus 232 Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~ 311 (1630)
T 1xi4_A 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 311 (1630)
T ss_pred ecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCC
Confidence 88543 1111 111 123445677788888889999999999999999998875444 2444544444432
Q ss_pred --ceEEEeCCCcEEEeeCCCCCCc
Q 046871 354 --NIWVATTDSSVHRWPAEGRNPQ 375 (764)
Q Consensus 354 --~l~~~s~dg~I~iwd~~~~~~~ 375 (764)
|++.....|.|.--.++....+
T Consensus 312 ~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 312 TAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred CCceEEEcCCceEEEEEEccchhh
Confidence 3777778887777776665544
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.51 E-value=2 Score=40.95 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=94.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCC-cc--ceeeccc--ccceeEEEEeCCCeEEEEeCCCcEEEecCCCCCeeeeecccc
Q 046871 51 GVDYLFTGSRDGTLKRWSLADDVG-SC--SATFESH--VDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQH 125 (764)
Q Consensus 51 d~~~L~sgs~Dg~I~iWd~~~~~~-~~--~~~l~~h--~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h 125 (764)
...+|++...| +|+.=....... .. ..+..++ =..+.+++|+|++.|.+. .+|.+.--+.. +... ....+.
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~-t~~~-~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPP-THDN-DNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCC-CSTT-CCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCC-CCCc-cccccc
Confidence 34567777777 555444333211 01 1122222 246789999999877666 67766655532 2111 111111
Q ss_pred CCc--------eEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCc
Q 046871 126 SDY--------VTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNS 197 (764)
Q Consensus 126 ~~~--------V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (764)
... -.++.|. +++.+.++ .||.|+-++-.+....
T Consensus 79 ~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~pP~~~~~----------------------------------- 120 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKASPPQSDTD----------------------------------- 120 (236)
T ss_dssp CEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTC-----------------------------------
T ss_pred ccEecccccccceEEEEC-CCCCEEEe--CCCEEEEeCCCcCCCC-----------------------------------
Confidence 122 3678888 77887777 5688887765321000
Q ss_pred ccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eeEEec-cCCcCeEEEEEcCC
Q 046871 198 ISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGS------KTIKLR-GHTDNIRSLLLDST 270 (764)
Q Consensus 198 i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~------~~~~l~-~h~~~V~~l~~spd 270 (764)
.|.. .....-..--..+..|.+.|+|.+.++. |+.+.-+..-++. ....+- ..-...+.+.|.++
T Consensus 121 --~Wl~----~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 121 --NWIA----RATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp --CHHH----HSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred --ceec----cccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 0000 0001111122467899999999877776 7776444333221 111111 23334556778888
Q ss_pred CCEEEEEeCCCcE
Q 046871 271 GRYCLSGSSDSMI 283 (764)
Q Consensus 271 g~~l~sgs~Dg~I 283 (764)
+...++. ++.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8776655 6643
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.25 E-value=1.4 Score=45.74 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=27.0
Q ss_pred cEEEEeCCCCe--eeEEEeeecCceEEEEEcCCCCEEEEecCCC------cEEEEeCCCCeEEEEe
Q 046871 282 MIRLWDLGQQR--CIHSYAVHTDSVWALASTPTFSHVYSGGRDL------SLYLTDLATRESLLLC 339 (764)
Q Consensus 282 ~I~iwdl~~~~--~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg------~I~iwd~~~~~~~~~~ 339 (764)
.+.+||+.+.+ .+..+......-.++ .-++++++.|+.++ .|.++++++++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 47788987643 332222211112222 23567777777543 3555677776655443
No 343
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=94.24 E-value=0.19 Score=42.71 Aligned_cols=88 Identities=9% Similarity=0.157 Sum_probs=70.9
Q ss_pred CcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 046871 635 NTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSG 714 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (764)
+.||+-++..++++.+|.+.+.|...++=+.|-.++..+..||.+.
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~---------------------------------- 71 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLP---------------------------------- 71 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCC----------------------------------
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCC----------------------------------
Confidence 5799999999998888899999988888899999999999999542
Q ss_pred cccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 715 LKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 715 ~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+++.|=|+||+.+.+++++++.+=.-+=-.-|-|.++|...+
T Consensus 72 ------~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~ 113 (117)
T 1eo6_A 72 ------SEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGEN 113 (117)
T ss_dssp ------TTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCC
T ss_pred ------CCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeCCc
Confidence 133456899999888999999986655224667999997543
No 344
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=94.14 E-value=0.27 Score=41.75 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=72.2
Q ss_pred CcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 046871 635 NTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSG 714 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (764)
+.||+=++..++++.+|.+.+.|.-.|+=+.|-.++.+|..||.+.
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~---------------------------------- 74 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLE---------------------------------- 74 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCC----------------------------------
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCC----------------------------------
Confidence 5789999999999989999999999999999999999999999542
Q ss_pred cccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 715 LKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 715 ~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+++.|=|+||+.+.+++++++.+=.-+=-.-|-|.++|...+
T Consensus 75 ------~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~ 116 (119)
T 3h9d_A 75 ------AESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEA 116 (119)
T ss_dssp ------TTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEECC-
T ss_pred ------ccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEeccc
Confidence 244577999999888899999987755335667999997543
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.13 E-value=5.2 Score=39.92 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=125.8
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecccccceeEEEEeCCCeEEEEeCCCcEEEecCCCCC
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDG 116 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~vWd~~~~~ 116 (764)
.|..++. -....++. . ||.|..|-.+.. +++-.. ......|..++...+..++. . ||.|..|-....+
T Consensus 25 ~i~~ia~------G~~h~~~l-~-~G~v~~wG~n~~-Gqlg~p-~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 25 GVDAIAG------GYFHGLAL-K-GGKVLGWGANLN-GQLTMP-AATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SCCEEEE------CSSEEEEE-E-TTEEEEEECCSS-STTSCC-GGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred CCcEEEe------CCCeEEEE-E-CCEEEEEeCCCC-CCCCCC-ccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCC
Confidence 5777776 23334444 4 899999976542 111111 11233577776655444444 4 8999999754433
Q ss_pred eeeeeccccCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCC
Q 046871 117 TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSN 196 (764)
Q Consensus 117 ~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (764)
++-.. ..-...|..++.. . ...++ -. +|.|+.|-.........
T Consensus 93 qlg~P-~~~~~~v~~ia~G-~-~hs~a-l~-~G~v~~wG~n~~gqlg~-------------------------------- 135 (282)
T 3qhy_B 93 QTTVP-AEARSGVDAIAAG-A-WASYA-LK-DGKVIAWGDDSDGQTTV-------------------------------- 135 (282)
T ss_dssp TTCCC-GGGSSSEEEEEEE-T-TEEEE-EE-TTEEEEEECCTTSTTSC--------------------------------
T ss_pred CCCCC-cccCCCeEEEECc-C-CEEEE-Ee-CCeEEEecCCCCCcCCC--------------------------------
Confidence 32111 1113467888776 2 33333 34 89999998764211100
Q ss_pred cccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEE
Q 046871 197 SISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLS 276 (764)
Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 276 (764)
.......|..++.... ..+.-. ||.|..|-....-.+..-..-...|..|+...+.. ++.
T Consensus 136 ----------------~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al 195 (282)
T 3qhy_B 136 ----------------PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL 195 (282)
T ss_dssp ----------------CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE
T ss_pred ----------------CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE
Confidence 0001234666665433 222233 68888886543222211111235677877764433 333
Q ss_pred EeCCCcEEEEeCCCCeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEEEEeecCCCeEEEEeeCCceE
Q 046871 277 GSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALHDDNIW 356 (764)
Q Consensus 277 gs~Dg~I~iwdl~~~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~~l~~spd~l~ 356 (764)
.||.|+.|-....-.+..-......|..++.......+++ ||.|+.|=.....++.. ...|..++......+
T Consensus 196 --~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~gq~~v---~~~v~~iaaG~~h~~ 267 (282)
T 3qhy_B 196 --KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGSSRTAPSSV---QSGVSSIEAGPNAAY 267 (282)
T ss_dssp --ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEESTTCCCCGGG---SSCEEEEEECSSCEE
T ss_pred --ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecCCCCccccC---CCCcEEEEECcCeEE
Confidence 5999999975432111111111234667776544333333 88999997654332221 335666666665533
No 346
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=93.81 E-value=0.29 Score=41.89 Aligned_cols=87 Identities=8% Similarity=0.097 Sum_probs=71.4
Q ss_pred CcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 046871 635 NTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSG 714 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (764)
+.||+=++..++.+.+|.+.+.|.-.|+=+.|-.++..|..||.+.
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~---------------------------------- 79 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR---------------------------------- 79 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCC----------------------------------
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCC----------------------------------
Confidence 5789999999999989999999999999999999999999999541
Q ss_pred cccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEEe
Q 046871 715 LKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVV 761 (764)
Q Consensus 715 ~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~ 761 (764)
+++.|=|+||+.+.+++++++.|=.-+=-.-|-|.++|...
T Consensus 80 ------~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e 120 (125)
T 3m95_A 80 ------PEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDE 120 (125)
T ss_dssp ------TTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEESS
T ss_pred ------ccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecCc
Confidence 24457799999877788999988775533566799999754
No 347
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=93.79 E-value=0.39 Score=40.76 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=72.0
Q ss_pred CcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 046871 635 NTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSG 714 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (764)
+.||+=++..++.+.+|.+.+.|.-.|+=+.|-.++.+|..||.+.
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~---------------------------------- 73 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP---------------------------------- 73 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCC----------------------------------
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcC----------------------------------
Confidence 5789999999999889999999999999999999999999999531
Q ss_pred cccccCCCCcEEEEeCCEecCCCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 715 LKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 715 ~~~~~~~~~~~el~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+++.|=|+||+.+.+++++++.+=.-+=-.-|-|.++|..-+
T Consensus 74 ------~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~ 115 (118)
T 3rui_B 74 ------PEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGEN 115 (118)
T ss_dssp ------TTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECC
T ss_pred ------CCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEeccc
Confidence 245577999998777889999987755344556999997643
No 348
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=93.24 E-value=0.4 Score=41.40 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=70.9
Q ss_pred CcceeEEEeeCCCCc-ccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 046871 635 NTKCSFYLHPCEGSA-VQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRS 713 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~-~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
+.||+=++..++++. +|.+.+.|.-.++=+.|-.++..|..||.+.
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~--------------------------------- 79 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLN--------------------------------- 79 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCC---------------------------------
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCC---------------------------------
Confidence 578999999999988 8999999999999999999999999999542
Q ss_pred CcccccCCCCcEEE-EeCCEecCCCCCHHHHhhccccCCCcEEEEEEEe
Q 046871 714 GLKSWQKLRPSIEI-LCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVV 761 (764)
Q Consensus 714 ~~~~~~~~~~~~el-~c~~~~~~~~~~l~tv~~~~wk~~~d~~l~y~~~ 761 (764)
+++.|=| +||+.+.+++++++.+=.-+=-.-|-|.++|...
T Consensus 80 -------~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e 121 (130)
T 2zjd_A 80 -------ANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQ 121 (130)
T ss_dssp -------TTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEH
T ss_pred -------CCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEeCC
Confidence 2344667 9999988899999998655422466799999753
No 349
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.12 E-value=11 Score=40.48 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=57.4
Q ss_pred CeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc------cccceeEEEEeCC----CeEEEEeC---
Q 046871 37 GINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES------HVDWVNDAVLVGD----NTLVSCSS--- 103 (764)
Q Consensus 37 ~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~------h~~~V~~v~~s~d----~~l~s~s~--- 103 (764)
.-.+|+| .|+|+++++-...+.|++++..++....+..+.. .......|+|+|+ +.|..+..
T Consensus 28 ~P~~~a~-----~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 28 KPHALLW-----GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SEEEEEE-----CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CceEEEE-----cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 4568898 5899877665433468888765433332333321 2456779999984 55444332
Q ss_pred ----------CCcEEEecCCCCC------eee-eecc-ccCCceEEEEEecCCCcEEEEEeC
Q 046871 104 ----------DTTLKTWNCSSDG------TCI-RTLR-QHSDYVTCLAAAEKNSNIVASGGL 147 (764)
Q Consensus 104 ----------Dg~V~vWd~~~~~------~~~-~~l~-~h~~~V~~l~~~p~~~~~lasg~~ 147 (764)
...|.-+++.... +.+ ..+. ........|+|. +++.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEECC
Confidence 1245555542211 111 1121 112356889999 67776666554
No 350
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.96 E-value=3.2 Score=42.87 Aligned_cols=140 Identities=8% Similarity=-0.018 Sum_probs=61.5
Q ss_pred CeEEEEeCCCCce--eEEeccCCcCeEEEEEcCCCCEEEEEeC------CCcEEEEeC--CCCee--eEEEeeecCceEE
Q 046871 239 KVVRVWDPRTGSK--TIKLRGHTDNIRSLLLDSTGRYCLSGSS------DSMIRLWDL--GQQRC--IHSYAVHTDSVWA 306 (764)
Q Consensus 239 g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~sgs~------Dg~I~iwdl--~~~~~--~~~l~~h~~~V~~ 306 (764)
..+.+||+.+.+- +..+......-.+++.. +++.++.|+. ...+.+||+ .+.+- +..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 5789999987643 22222111110223222 4666666653 345777876 33321 1111111111111
Q ss_pred EEEcCCCCEEEEecCC----------------------CcEEEEeCCCCeEEEE--eecCCCeEEEEeeCCc-eEEEeCC
Q 046871 307 LASTPTFSHVYSGGRD----------------------LSLYLTDLATRESLLL--CTGEHPILQLALHDDN-IWVATTD 361 (764)
Q Consensus 307 l~~spd~~~l~sgs~D----------------------g~I~iwd~~~~~~~~~--~~~~~~V~~l~~spd~-l~~~s~d 361 (764)
.+...++++++.|+.+ ..+.+||+.+.+-... +.....-.+++...+. ++.|+.+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEEC
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeC
Confidence 1222255666777632 2577899886543222 2221111223333444 5666643
Q ss_pred C------cEEEeeCCCCCCceeee
Q 046871 362 S------SVHRWPAEGRNPQKVFQ 379 (764)
Q Consensus 362 g------~I~iwd~~~~~~~~~~~ 379 (764)
+ .|.++++++++.....+
T Consensus 327 ~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp GGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCCEeeeEEEEEEcCcEeEeeec
Confidence 2 45666887776654433
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.95 E-value=8.1 Score=38.48 Aligned_cols=142 Identities=12% Similarity=0.031 Sum_probs=77.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA 298 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~ 298 (764)
.|..++..... .++. . ||.|..|-....-.+..-..-...|..++...+ +.+.-. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 45556654332 2333 4 888888875432221111111346888877644 333344 9999999764422111111
Q ss_pred eecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCeEE-EEeecCCCeEEEEeeCCc-eEEEeCCCcEEEeeCCC
Q 046871 299 VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESL-LLCTGEHPILQLALHDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 299 ~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~~l~~spd~-l~~~s~dg~I~iwd~~~ 371 (764)
.....|..++...+...++ . ||.|+.|-......+ ........|..++..... ++. .||.|+.|-...
T Consensus 138 ~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 1234577776654433332 3 688999876432211 111224568888887777 444 599999997654
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.84 E-value=8.2 Score=38.87 Aligned_cols=61 Identities=7% Similarity=-0.010 Sum_probs=36.6
Q ss_pred EEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeC--CCcEEEEeCC
Q 046871 224 AMNDSGNLLVSGGTE--KVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSS--DSMIRLWDLG 289 (764)
Q Consensus 224 ~~sp~g~~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwdl~ 289 (764)
.+.|++.+|+-...+ ..|..-++.... ...+.. ..+ ..|+|++++|+-++. .+.|..-++.
T Consensus 190 ~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred eeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 355888888766543 367777776544 344432 233 347788988876532 3566666664
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.50 E-value=2.9 Score=47.89 Aligned_cols=106 Identities=11% Similarity=0.216 Sum_probs=54.8
Q ss_pred CCcEEEEEeCC----CcEEEEeCCCCCCccce-e-----ecccccceeEEEEeC-CC-eEEEEeCC------CcEEEecC
Q 046871 51 GVDYLFTGSRD----GTLKRWSLADDVGSCSA-T-----FESHVDWVNDAVLVG-DN-TLVSCSSD------TTLKTWNC 112 (764)
Q Consensus 51 d~~~L~sgs~D----g~I~iWd~~~~~~~~~~-~-----l~~h~~~V~~v~~s~-d~-~l~s~s~D------g~V~vWd~ 112 (764)
++.+++.||.+ ..+.+||..+.....+. . +...... .+++..+ ++ .++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 46677777753 46888998875544333 2 1111111 2333442 44 55666543 34778886
Q ss_pred CCCC-eeeeeccccCCceEEEEEecCCCcEEEEEeCCC--eEEEEeCCCC
Q 046871 113 SSDG-TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGA--EVFIWDIEAA 159 (764)
Q Consensus 113 ~~~~-~~~~~l~~h~~~V~~l~~~p~~~~~lasg~~dg--~I~iwdl~~~ 159 (764)
.... ..+..+...... .+++.. .++.+++.||.++ .+.+||+.+.
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSL-PDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEEC-TTSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCCcEEECCCCCCCccc-ceEEEE-cCCEEEEECCCCCCCCEEEEECCCC
Confidence 4321 112122211112 223332 2678888887755 6888888763
No 354
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=92.26 E-value=0.53 Score=37.89 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=67.6
Q ss_pred CcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 046871 635 NTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSG 714 (764)
Q Consensus 635 ~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (764)
-.||...++|-.+ .|.+.+.+.--+.=+.+-.++.++..||.+.
T Consensus 3 ~~Kv~v~fk~~g~--~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~---------------------------------- 46 (91)
T 4gdk_A 3 KKKIDILLKAVGD--TPIMKTKKWAVERTRTIQGLIDFIKKFLKLV---------------------------------- 46 (91)
T ss_dssp -CEEEEEEEECSS--SCCCSCCEEEEETTCBHHHHHHHHHHHTTCC----------------------------------
T ss_pred CceEEEEEEecCC--CCcccccEEEcCCCCCHHHHHHHHHHHhCCC----------------------------------
Confidence 4589999998654 5678888988888899999999999999541
Q ss_pred cccccCCCCcEEEEeCCEecCC-CCCHHHHhhccccCCCcEEEEEEEee
Q 046871 715 LKSWQKLRPSIEILCNNQVLSP-DMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 715 ~~~~~~~~~~~el~c~~~~~~~-~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+++.|=|+||+..+|. +++++.+=..+ |..|.|.++|-.-+
T Consensus 47 ------~~~alFlyVnn~~~P~~d~~~~~Ly~~~-k~DGfLyv~Ys~~~ 88 (91)
T 4gdk_A 47 ------ASEQLFIYVNQSFAPSPDQEVGTLYECF-GSDGKLVLHYCKSQ 88 (91)
T ss_dssp ------SSSCCEEEETTTBCCCTTCBHHHHHHHH-CBTTEEEEEEESSC
T ss_pred ------CCCeEEEEECCccCCChhhHHHHHHHHh-CCCCEEEEEEeCcc
Confidence 2455779999987765 89999997755 58889999997543
No 355
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=91.12 E-value=0.7 Score=37.56 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=64.9
Q ss_pred CCCCCcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 046871 631 PPRENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGS 710 (764)
Q Consensus 631 ~~~~~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (764)
|+++..||...++|..+ .|.+.+.|.-.+.=+++..++.++..||.++
T Consensus 7 ~~~~~~KV~V~~~~~~~--~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~------------------------------ 54 (96)
T 1wz3_A 7 SPNSVQKIVVHLRATGG--APILKQSKFKVSGSDKFANVIDFLRRQLHSD------------------------------ 54 (96)
T ss_dssp -----CEEEEEEEECTT--CCCCSCCEEEEETTSBTHHHHHHHHHHHTCS------------------------------
T ss_pred CCCCCCeEEEEEEECCC--CCcccccEEEeCCCCcHHHHHHHHHHhcCCc------------------------------
Confidence 34568899999999854 6788888999999999999999999999431
Q ss_pred ccCCcccccCCCCcEEEEeCCEe-cCCCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 711 FRSGLKSWQKLRPSIEILCNNQV-LSPDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 711 ~~~~~~~~~~~~~~~el~c~~~~-~~~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
.|=|+||+.. -.++.+++.+=..+ |..|.|.++|...+
T Consensus 55 -------------alFlyvn~~~~Ps~d~~m~~LY~~~-kdDGfLyi~Ys~~~ 93 (96)
T 1wz3_A 55 -------------SLFVYVNSAFSPNPDESVIDLYNNF-GFDGKLVVNYACSM 93 (96)
T ss_dssp -------------SCEEEEEEEECCCTTSBHHHHHHHH-CBTTBEEEEEESCS
T ss_pred -------------eEEEEECCcccCChhhHHHHHHHHh-CCCCEEEEEEeCCc
Confidence 2558999944 45689999986544 34778999997543
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=87.05 E-value=27 Score=35.11 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=103.9
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC-------CccceeecccccceeEEEEeCCCeEEEEeCCCcE---EEecCCCC----
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDV-------GSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTL---KTWNCSSD---- 115 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V---~vWd~~~~---- 115 (764)
|+..++++.+.+|.|+--.+..-. +.....+..+..-+..+.-+..+.++..+..|.+ .++++...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 356788899999999877765411 1111122333332333333344567777777774 44554322
Q ss_pred -Ceeee-ecc-ccCCceEEEEEec--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCccccee
Q 046871 116 -GTCIR-TLR-QHSDYVTCLAAAE--KNSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLR 190 (764)
Q Consensus 116 -~~~~~-~l~-~h~~~V~~l~~~p--~~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (764)
+..+. .+. ...+.|..+...+ .+..+++..+..|.++...+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-------------------------- 134 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-------------------------- 134 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT--------------------------
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc--------------------------
Confidence 22221 111 1234565554321 2456788899999999988754211110
Q ss_pred ecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeccCCcC
Q 046871 191 TIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT---------GSKTIKLRGHTDN 261 (764)
Q Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~---------~~~~~~l~~h~~~ 261 (764)
.+.....+..+ +.+..+....+...++..+.+|.+..++... |.....+. ..+.
T Consensus 135 ---------------~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~ 197 (307)
T 1zi0_A 135 ---------------AGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDK 197 (307)
T ss_dssp ---------------TCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCC
T ss_pred ---------------CCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCE
Confidence 01111112223 4455554444455677788888887776532 11222333 2356
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 262 IRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 262 V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
|.++....++..+++.+..|.++-.++.
T Consensus 198 Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 198 VVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 6666655556678888899998888763
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.59 E-value=16 Score=41.63 Aligned_cols=146 Identities=12% Similarity=0.073 Sum_probs=78.5
Q ss_pred CCCCEEEEEeCC----CeEEEEeCCCCceeEEe-c-------cCCcCeEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 046871 227 DSGNLLVSGGTE----KVVRVWDPRTGSKTIKL-R-------GHTDNIRSLLLDSTGRYCLSGSSD------SMIRLWDL 288 (764)
Q Consensus 227 p~g~~l~sgs~d----g~I~iwd~~~~~~~~~l-~-------~h~~~V~~l~~spdg~~l~sgs~D------g~I~iwdl 288 (764)
-++.+++.|+.+ ..+.+||+.+++-...- . .....-..+.+..+++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777788753 46888998876533222 1 111122333332267777777754 35888998
Q ss_pred CCCeeeE--EEeeecCceEEEEEcCCCCEEEEecCCC--cEEEEeCCCCeEEEEee------cCCCeEEEEeeCC-c--e
Q 046871 289 GQQRCIH--SYAVHTDSVWALASTPTFSHVYSGGRDL--SLYLTDLATRESLLLCT------GEHPILQLALHDD-N--I 355 (764)
Q Consensus 289 ~~~~~~~--~l~~h~~~V~~l~~spd~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~------~~~~V~~l~~spd-~--l 355 (764)
.+.+-.. .+...... .+++...++..++.|+.++ .+.+||..+..-..... ......++.+..+ + +
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 7754222 11111111 2233324778888887655 69999998765333221 1112233555544 3 4
Q ss_pred EEEeC--C-----CcEEEeeCCCCC
Q 046871 356 WVATT--D-----SSVHRWPAEGRN 373 (764)
Q Consensus 356 ~~~s~--d-----g~I~iwd~~~~~ 373 (764)
+.|+. + +.+.+||+.+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 44443 1 357788877665
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.37 E-value=34 Score=35.55 Aligned_cols=99 Identities=9% Similarity=0.005 Sum_probs=49.7
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEecc-----C--------CcCeEEEEEcCC-CCEEEEEeCCCc
Q 046871 218 ESVYALAMND-SGNLLVSGGTEKVVRVWDPRTGSKTIKLRG-----H--------TDNIRSLLLDST-GRYCLSGSSDSM 282 (764)
Q Consensus 218 ~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~-----h--------~~~V~~l~~spd-g~~l~sgs~Dg~ 282 (764)
..+.+|.+.| +...|+.+..++.|...+ ..++.-..+.. + ...+.+|.++|+ ...|+.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 4688899987 344455555445454443 22332222211 0 124889999985 45677776544
Q ss_pred EEEEeCCCCeeeEEEee--ec---CceEEEEEcC-CCCEEEEe
Q 046871 283 IRLWDLGQQRCIHSYAV--HT---DSVWALASTP-TFSHVYSG 319 (764)
Q Consensus 283 I~iwdl~~~~~~~~l~~--h~---~~V~~l~~sp-d~~~l~sg 319 (764)
|...+- .++.-..+.. .. ..+.+++++| +...|+.+
T Consensus 255 l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 444332 2322222211 11 2356788876 33444444
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.25 E-value=42 Score=34.80 Aligned_cols=130 Identities=9% Similarity=-0.007 Sum_probs=61.6
Q ss_pred cEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEecc--CC---cCeEEEEEcC-CCCEEEEEeC-----------C
Q 046871 219 SVYALAMNDS-GNLLVSGGTEKVVRVWDPRTGSKTIKLRG--HT---DNIRSLLLDS-TGRYCLSGSS-----------D 280 (764)
Q Consensus 219 ~V~~l~~sp~-g~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~---~~V~~l~~sp-dg~~l~sgs~-----------D 280 (764)
.+.+|++.|. ...|+.+...+ |...+ ..++.-..+.. .. ..+.++.++| +...|+++.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 5888999885 46677776554 44443 22332222221 11 3456788876 3344444432 2
Q ss_pred CcEEEEeCCC-CeeeEEEee--ec-C-----ceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCeEEEEee-cCCCeEEEE
Q 046871 281 SMIRLWDLGQ-QRCIHSYAV--HT-D-----SVWALASTPT-FSHVYSGGRDLSLYLTDLATRESLLLCT-GEHPILQLA 349 (764)
Q Consensus 281 g~I~iwdl~~-~~~~~~l~~--h~-~-----~V~~l~~spd-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~~l~ 349 (764)
+...+|.... ++.-..+.. .. . -...++++|. ...|+.++.++.|..-+- .++.-..+. .-..+.++.
T Consensus 311 ~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D-~G~tW~~~~~~lp~~~~v~ 389 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASAD-EGEHWQCIASHLPHIYAVQ 389 (394)
T ss_dssp SSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESS-TTSBCEEEECSCSCEEEEE
T ss_pred CceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECC-CCCCceEcccCCCCeeEEE
Confidence 3344554433 333232221 00 0 0135778774 345666766666654332 233222222 223466666
Q ss_pred ee
Q 046871 350 LH 351 (764)
Q Consensus 350 ~s 351 (764)
|.
T Consensus 390 ~~ 391 (394)
T 3b7f_A 390 SA 391 (394)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 360
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=83.26 E-value=3.7 Score=32.89 Aligned_cols=83 Identities=12% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCcceeEEEeeCCCCcccccccCccccccchhhhhHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 046871 634 ENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMVFDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRS 713 (764)
Q Consensus 634 ~~~k~~f~l~p~~~~~~~~~~~~~l~a~~~l~~~kv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
+..||...++|-.+ .|.+.+.+.--+.=+++..++.++..||.+
T Consensus 5 ~~~Kv~vrfk~~g~--~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---------------------------------- 48 (91)
T 3w1s_C 5 NIQKIQIKFQPIGS--IGQLKPSVCKISMSQSFAMVILFLKRRLKM---------------------------------- 48 (91)
T ss_dssp -CCEEEEEEEECCC---------EEEEETTSBHHHHHHHHHHHHTC----------------------------------
T ss_pred CCCeEEEEEEecCC--CCcccccEEEcCCCCCHHHHHHHHHHhhCC----------------------------------
Confidence 36799999999764 567888888888889999999999999943
Q ss_pred CcccccCCCCcEEEEeCCEecC-CCCCHHHHhhccccCCCcEEEEEEEee
Q 046871 714 GLKSWQKLRPSIEILCNNQVLS-PDMSLATVRAYVWKKPEDLVLNYRVVQ 762 (764)
Q Consensus 714 ~~~~~~~~~~~~el~c~~~~~~-~~~~l~tv~~~~wk~~~d~~l~y~~~~ 762 (764)
+.|=|+||+..+| |+.+++.+=..+ |..|.|.++|-.-+
T Consensus 49 ---------~alFlyVNn~f~Ps~d~~~~~Ly~~f-k~dg~Lyv~Ys~~~ 88 (91)
T 3w1s_C 49 ---------DHVYCYINNSFAPSPQQNIGELWMQF-KTNDELIVSYCASV 88 (91)
T ss_dssp ---------SCCEEEETTTBCCCTTSBHHHHHHHH-CBTTEEEEEEEC--
T ss_pred ---------ceEEEEECCccCCCcccHHHHHHHHh-CCCCEEEEEEeCcc
Confidence 1256999997655 488999987644 47888999997543
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.51 E-value=43 Score=33.65 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=108.7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC-------CccceeecccccceeEEEE-eCCCeEEEEeCCCcEEEe---cCCCC---
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDV-------GSCSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTW---NCSSD--- 115 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~l~~h~~~V~~v~~-s~d~~l~s~s~Dg~V~vW---d~~~~--- 115 (764)
++..++++.+.+|.|+--.+..-. +.....+.... .+..+.. +..+.++..+..|.++-. ++...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D-~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCC-EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 567789999999999988765411 11111223333 3334333 344577788888875544 33221
Q ss_pred --Ceee---eeccccCCceEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccc
Q 046871 116 --GTCI---RTLRQHSDYVTCLAAAEK--NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTS 188 (764)
Q Consensus 116 --~~~~---~~l~~h~~~V~~l~~~p~--~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (764)
+..+ -.+. ..+.|.++...+. +...++..+..|.++...+.......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r------------------------- 138 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK------------------------- 138 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------------------------
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-------------------------
Confidence 1111 1122 2234555544321 46678888999999998876521110
Q ss_pred eeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeccCC
Q 046871 189 LRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT---------GSKTIKLRGHT 259 (764)
Q Consensus 189 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~---------~~~~~~l~~h~ 259 (764)
..+.....+.. .+.+..+....+...++..+.+|.+..+.... |.....+.. .
T Consensus 139 ----------------~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~ 200 (312)
T 1suu_A 139 ----------------SRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-G 200 (312)
T ss_dssp ------------------CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-T
T ss_pred ----------------CCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-C
Confidence 00111112222 44555555555556788888999988887543 222333432 4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 260 DNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 260 ~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
+.|.++..-.++..+++.+..|..+..++.
T Consensus 201 d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 201 DLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 566666655566778888899998888874
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.31 E-value=65 Score=32.59 Aligned_cols=236 Identities=12% Similarity=0.122 Sum_probs=127.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCC-------CCccceeecccccceeEEEEe-CCCeEEEEeCCCcE---EEecCCCC-----
Q 046871 52 VDYLFTGSRDGTLKRWSLADD-------VGSCSATFESHVDWVNDAVLV-GDNTLVSCSSDTTL---KTWNCSSD----- 115 (764)
Q Consensus 52 ~~~L~sgs~Dg~I~iWd~~~~-------~~~~~~~l~~h~~~V~~v~~s-~d~~l~s~s~Dg~V---~vWd~~~~----- 115 (764)
...+++-+.+|.|+--.+.+- .+..-..++. .+.+..+... ....|+.-+..|.+ ++|++...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke-~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQ-DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCG-GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 357788889999987654320 0111112222 3344444333 33466666666654 45665321
Q ss_pred Ceeeee-cc-ccCCceEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceee
Q 046871 116 GTCIRT-LR-QHSDYVTCLAAAEK--NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRT 191 (764)
Q Consensus 116 ~~~~~~-l~-~h~~~V~~l~~~p~--~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (764)
+..+.. +. .....|..+...+. +..+++..+.+|.|+.-.+........
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--------------------------- 134 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--------------------------- 134 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS---------------------------
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc---------------------------
Confidence 222221 11 12345655544422 577999999999999988765321110
Q ss_pred cCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC--C---------CceeEEeccCCc
Q 046871 192 IGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPR--T---------GSKTIKLRGHTD 260 (764)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~--~---------~~~~~~l~~h~~ 260 (764)
.+.....+.. .+.+..+........|+..+..|.+..+... . |.....+. ..+
T Consensus 135 --------------~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d 198 (327)
T 3uc1_A 135 --------------GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDD 198 (327)
T ss_dssp --------------SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTC
T ss_pred --------------CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCC
Confidence 0111112222 3445555444455678888888988777665 2 11122232 345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEEe--eecCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ-------RCIHSYA--VHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~-------~~~~~l~--~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
.|.++...+++.+++..+..|.++.-.+..- +-+..+. .-.+.+..+....+...++..+.+|.+..++..
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 6777776666778999999999998876322 1122222 113344444443344566666777777777653
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.07 E-value=70 Score=31.40 Aligned_cols=153 Identities=10% Similarity=0.022 Sum_probs=94.7
Q ss_pred CCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC------ceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046871 217 KESVYALAMND-SGNLLVSGGTEKVVRVWDPRTG------SKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 217 ~~~V~~l~~sp-~g~~l~sgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~ 289 (764)
...|..+.... +..+++..+.+|.++...+..- .....++ ..+.+..+........++..+..|.+..++..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 34455554321 4678999999999998876442 2222333 24566666666666788889999998888753
Q ss_pred C---------CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCC-------CeEEEEeecCCCeEEEEe-eC
Q 046871 290 Q---------QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT-------RESLLLCTGEHPILQLAL-HD 352 (764)
Q Consensus 290 ~---------~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~-------~~~~~~~~~~~~V~~l~~-sp 352 (764)
. |.....+. ..+.|.++...++...++..+..|.++...+.. ++-+..+...+.+..+.. ..
T Consensus 146 eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~ 224 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKE 224 (276)
T ss_dssp GSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESS
T ss_pred hCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCC
Confidence 2 22222232 235566666555667888999999999887642 222333333445555443 33
Q ss_pred Cc-eEEEeCCCcEEE--eeCCC
Q 046871 353 DN-IWVATTDSSVHR--WPAEG 371 (764)
Q Consensus 353 d~-l~~~s~dg~I~i--wd~~~ 371 (764)
+. ++..+.+|.+.. ++...
T Consensus 225 ~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 225 EVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEcCCCeEEEeeeCHHH
Confidence 33 888888888877 77653
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.85 E-value=92 Score=32.20 Aligned_cols=150 Identities=10% Similarity=0.082 Sum_probs=85.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------ceeEEeccC-CcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-----------SKTIKLRGH-TDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-----------~~~~~l~~h-~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
.+..++++......+.-..||.|..|-.... .....+... ...|..|+.. ....+.-..||.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 3445566555666777778899999954321 011112211 2256666655 4455566679999999
Q ss_pred eCCCC------e---e--eEEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-----------eEEEEee--c
Q 046871 287 DLGQQ------R---C--IHSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-----------ESLLLCT--G 341 (764)
Q Consensus 287 dl~~~------~---~--~~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-----------~~~~~~~--~ 341 (764)
-.... . . ...+.. ....|..++......+.+.-..||.|+.|-.... .....+. .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 64321 0 0 111111 1234667766543356666678899999964321 0111111 1
Q ss_pred CCCeEEEEeeCCceEEEeCCCcEEEeeCC
Q 046871 342 EHPILQLALHDDNIWVATTDSSVHRWPAE 370 (764)
Q Consensus 342 ~~~V~~l~~spd~l~~~s~dg~I~iwd~~ 370 (764)
...|..++......++-+.+|.|+.|-..
T Consensus 264 ~~~v~~v~~G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 264 GLGVVKVECGSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp TSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCcEEEEeCCCCEEEEEeCCCeEEEEeCC
Confidence 23577888777776667889999999764
No 365
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=72.32 E-value=13 Score=40.55 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=62.0
Q ss_pred cEEEEeCCC----CeeeEEEeeecCceEEEEEcCCCCEEEEec-CCCcEEEEeCCCC------eE-------EEEeecCC
Q 046871 282 MIRLWDLGQ----QRCIHSYAVHTDSVWALASTPTFSHVYSGG-RDLSLYLTDLATR------ES-------LLLCTGEH 343 (764)
Q Consensus 282 ~I~iwdl~~----~~~~~~l~~h~~~V~~l~~spd~~~l~sgs-~Dg~I~iwd~~~~------~~-------~~~~~~~~ 343 (764)
.|.+.|.+. +..+..+-.-......+.++|||++++.++ .+.++.++|++.- +. .......-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 477888766 333333333445567889999999988654 5889999998732 11 22333355
Q ss_pred CeEEEEeeCCc-eEEEe-CCCcEEEeeCCC
Q 046871 344 PILQLALHDDN-IWVAT-TDSSVHRWPAEG 371 (764)
Q Consensus 344 ~V~~l~~spd~-l~~~s-~dg~I~iwd~~~ 371 (764)
.....+|.++| .++.- -|+.|..|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 67899999999 44443 699999999964
No 366
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=70.46 E-value=20 Score=39.11 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=59.1
Q ss_pred EEEEeCCC----CceeEEeccCCcCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC------ee-------eEEEeeecC
Q 046871 241 VRVWDPRT----GSKTIKLRGHTDNIRSLLLDSTGRYCLSGS-SDSMIRLWDLGQQ------RC-------IHSYAVHTD 302 (764)
Q Consensus 241 I~iwd~~~----~~~~~~l~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwdl~~~------~~-------~~~l~~h~~ 302 (764)
|.+.|.+. +..+..+..-......+.++|||+++++++ -+.++.++|++.. +. ..... -.-
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence 56666655 333333323344556788999999977655 5789999998631 11 12222 123
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 046871 303 SVWALASTPTFSHVYSGGRDLSLYLTDLAT 332 (764)
Q Consensus 303 ~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~ 332 (764)
.....+|+++|.-..|.--|..|..|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 467889999995444666899999999864
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.38 E-value=1.6e+02 Score=33.44 Aligned_cols=97 Identities=7% Similarity=0.033 Sum_probs=56.5
Q ss_pred CCCeEEEEeCCCCc-------eeEE-ec-cCCcCeEEEEEcCCCCEEEEEeCCCc--EEEEeCCCCe-eeEE-Eeee-cC
Q 046871 237 TEKVVRVWDPRTGS-------KTIK-LR-GHTDNIRSLLLDSTGRYCLSGSSDSM--IRLWDLGQQR-CIHS-YAVH-TD 302 (764)
Q Consensus 237 ~dg~I~iwd~~~~~-------~~~~-l~-~h~~~V~~l~~spdg~~l~sgs~Dg~--I~iwdl~~~~-~~~~-l~~h-~~ 302 (764)
..+.|...|+.++. .... +. .....+..+.+..+ ..+++...++. |.++|+.+++ .... +... .+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46778888876532 2222 32 22346778888865 56777777765 6777776664 2333 3222 24
Q ss_pred ceEEEEEcCCCCEE-EEecC---CCcEEEEeCCCCeE
Q 046871 303 SVWALASTPTFSHV-YSGGR---DLSLYLTDLATRES 335 (764)
Q Consensus 303 ~V~~l~~spd~~~l-~sgs~---Dg~I~iwd~~~~~~ 335 (764)
.+.....++++..+ ++.+. -+.+..+|+. ++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 56666666766544 44332 3678888887 543
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.55 E-value=20 Score=42.51 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=33.4
Q ss_pred CceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 420 GIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 420 ~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.+.+++..+|..+|+|-+.|+++|+|++.+|+++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677788889999999999999999999999998875
No 369
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=64.16 E-value=1.5e+02 Score=31.46 Aligned_cols=30 Identities=10% Similarity=-0.176 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCc-EEEEEeCCCeEEEEeCC
Q 046871 127 DYVTCLAAAEKNSN-IVASGGLGAEVFIWDIE 157 (764)
Q Consensus 127 ~~V~~l~~~p~~~~-~lasg~~dg~I~iwdl~ 157 (764)
...+.|+|. +++. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHS-GDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECC-SSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEEC-CCCCeEEEEEeCCceEEEEeCC
Confidence 456789999 5564 45556678999999754
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.55 E-value=54 Score=38.80 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA 298 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~ 298 (764)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999998865
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.29 E-value=2.4e+02 Score=32.37 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=55.7
Q ss_pred CCCeeEEEeecccccCCCcEEEEEeCCCcEEEEeCCCCCCccceeecc----cccceeEEEEeCC--CeEEEEeCCCc--
Q 046871 35 CAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFES----HVDWVNDAVLVGD--NTLVSCSSDTT-- 106 (764)
Q Consensus 35 ~~~V~~l~~~~~~~S~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~l~~----h~~~V~~v~~s~d--~~l~s~s~Dg~-- 106 (764)
.+.|.+|++.+. +...++.++..|.|...+=.....+.+..... ....|.+|++.|. +.++.+..+..
T Consensus 14 ~g~i~~i~~~p~----~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPK----TKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSS----STTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCC----CCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 357999999531 24567777777776655432211222111011 1346899999885 34544443211
Q ss_pred --EEEecCCCCCeeeeeccc---------cCCceEEEEEecCCCcEEEEEeCCC
Q 046871 107 --LKTWNCSSDGTCIRTLRQ---------HSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 107 --V~vWd~~~~~~~~~~l~~---------h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
-.||.-...++.-..+.. ....+..+++.|.+.+.++.+...+
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 334432233432222211 0113556888866666776666433
No 372
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=59.74 E-value=8.9 Score=31.06 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=27.1
Q ss_pred ecCCCCCHHHHhhccccCCCcEEEEEEEe
Q 046871 733 VLSPDMSLATVRAYVWKKPEDLVLNYRVV 761 (764)
Q Consensus 733 ~~~~~~~l~tv~~~~wk~~~d~~l~y~~~ 761 (764)
+|.-+|||..|.--+||...-|.|+|-..
T Consensus 82 ~L~gs~tLe~VneKywkvnkplelYYa~~ 110 (111)
T 3gs2_A 82 VLDGSFSLELVSEKYWKVNKPMELYYAPT 110 (111)
T ss_dssp ECCTTSBHHHHHHHHTCSSSCEEEEEEEC
T ss_pred EccCcccHHHHhhhhccCCCCeeEEeccc
Confidence 68999999999999999999999999864
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=59.36 E-value=1.5e+02 Score=29.80 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=94.0
Q ss_pred CCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-------CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 217 KESVYALAMND---SGNLLVSGGTEKVVRVWDPRT-------GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 217 ~~~V~~l~~sp---~g~~l~sgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
...|.++..-+ +..+++..+.+|.|+...+.. |.....++. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 34455544332 577999999999999887543 222233443 4556666555566788888899998888
Q ss_pred eCC--CC---------eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-------eEEEEee--c-CCCe
Q 046871 287 DLG--QQ---------RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-------ESLLLCT--G-EHPI 345 (764)
Q Consensus 287 dl~--~~---------~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-------~~~~~~~--~-~~~V 345 (764)
... .- .....+. ..+.|.++...++..+++..+..|.++...+..- .-+..+. . .+.+
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred ECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 765 21 1111222 2455777777666678999999999998876421 2222222 2 3344
Q ss_pred EEEEe-eCCc-eEEEeCCCcEEEeeCCC
Q 046871 346 LQLAL-HDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 346 ~~l~~-spd~-l~~~s~dg~I~iwd~~~ 371 (764)
..+.. ..+. ++..+.+|.+..++...
T Consensus 252 v~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 252 VGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 44433 3333 77888888877777654
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.28 E-value=17 Score=44.23 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=32.9
Q ss_pred CceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeec
Q 046871 420 GIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDY 456 (764)
Q Consensus 420 ~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~ 456 (764)
.+.+++..++..+|+|-+.|+++|+||+.+|+++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4566777889999999999999999999999998875
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.19 E-value=39 Score=38.09 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=54.8
Q ss_pred CCCeEEEEeeCCceEEEeCCCcEEEeeCCCCCCceeeecCCcceeccccccccc--cccCCCCCcccCCCCCCccccCCC
Q 046871 342 EHPILQLALHDDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRAR--VSLEGSTPVSSRFKEPNFTIPGIP 419 (764)
Q Consensus 342 ~~~V~~l~~spd~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~i~g~~ 419 (764)
..|-.-++.+++.++++-.||.+-..+-....- + ....|+... .++.+ ++... ..+...
T Consensus 161 R~Ph~L~avs~~~liVsL~DGGLLrL~r~~~~d---~--------~~~~Fnd~s~l~SL~~------lf~~~-~~~~~~- 221 (729)
T 3f7f_A 161 RVPHFLFYVSPQFSVVFLEDGGLLGLKKVDGVH---Y--------EPLLFNDNSYLKCLTR------FFSRS-SKSDYD- 221 (729)
T ss_dssp SCEEEEEECSSSBEEEEETTSCEECCEESSSSC---E--------ECCCCCCCGGGGGGST------TCCTT-CSSCCC-
T ss_pred cCCcEEEEECCCeEEEEEcCCCEEEEEeccCCC---c--------ceeeecCCchhhhhHH------hhcCC-CCCCcC-
Confidence 445666777777788888888776665443211 1 111122110 00111 11110 111112
Q ss_pred CceEeEEecCCcEEEEeeCCCcEEEEEccccEEeeecC
Q 046871 420 GIVQHEILNNRRHVLTKDAAGSVKLWEITRGVVVEDYG 457 (764)
Q Consensus 420 ~i~~~~~s~dg~~l~t~s~dG~V~lWdi~tg~~i~~~~ 457 (764)
.++.+. ..+..+|+|-+.|.++|+||+.+++++.+..
T Consensus 222 ~~Is~~-~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCK-LFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEE-EETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEe-ccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 344433 3357899999999999999999999998863
No 376
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=57.14 E-value=2.7e+02 Score=31.94 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=39.1
Q ss_pred ccceeEEEEeCC--CeEEEEeCCCcEEEecCCCCCeeeeecccc-------CCceEEEEEecCCCcEEEEEe
Q 046871 84 VDWVNDAVLVGD--NTLVSCSSDTTLKTWNCSSDGTCIRTLRQH-------SDYVTCLAAAEKNSNIVASGG 146 (764)
Q Consensus 84 ~~~V~~v~~s~d--~~l~s~s~Dg~V~vWd~~~~~~~~~~l~~h-------~~~V~~l~~~p~~~~~lasg~ 146 (764)
...|.+|+++|. +.++.+...+.|...+ ..++.-..+..+ ...|.+|++.|.+.+.++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 457999999986 4677777777776665 234433333322 246999999965555555554
No 377
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.96 E-value=2.2e+02 Score=29.17 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC-------CCCccceeecccccceeEEEEeCC-CeEEEEeCCCcEE---EecCCCC---
Q 046871 50 NGVDYLFTGSRDGTLKRWSLAD-------DVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLK---TWNCSSD--- 115 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~-------~~~~~~~~l~~h~~~V~~v~~s~d-~~l~s~s~Dg~V~---vWd~~~~--- 115 (764)
++..++++.+.+|.|+--.+.. +.+.....++. .+.+..+..... ..++..+..|.++ +|++...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 6778999999999999765432 11222233333 445555555443 4677677777654 4554321
Q ss_pred --Ceeeee-cc-ccCCceEEEEEec--CCCcEEEEEeCCCeEEEEeCCC
Q 046871 116 --GTCIRT-LR-QHSDYVTCLAAAE--KNSNIVASGGLGAEVFIWDIEA 158 (764)
Q Consensus 116 --~~~~~~-l~-~h~~~V~~l~~~p--~~~~~lasg~~dg~I~iwdl~~ 158 (764)
|..+.. +. .....|.++.... .+..+|+.++..|.++...+..
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 222221 11 1234555554432 2356899999999999988765
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=50.15 E-value=2.1e+02 Score=28.67 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=106.7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC--CccceeecccccceeEEEEeCCCeEEEEeCCCcEE---EecCCCC-----Ceee
Q 046871 50 NGVDYLFTGSRDGTLKRWSLADDV--GSCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLK---TWNCSSD-----GTCI 119 (764)
Q Consensus 50 ~d~~~L~sgs~Dg~I~iWd~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~l~s~s~Dg~V~---vWd~~~~-----~~~~ 119 (764)
++..++++.+.+|.|+--.+..-. ......+.....-+..+.-+..+.++..+..|.++ ++++... |..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 567789999999999977654210 11112334333333333334445777777788744 4454222 2222
Q ss_pred ee-ccc-cCCceEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCC
Q 046871 120 RT-LRQ-HSDYVTCLAAAEK--NSNIVASGGLGAEVFIWDIEAALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSS 195 (764)
Q Consensus 120 ~~-l~~-h~~~V~~l~~~p~--~~~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (764)
.. +.- ....|..+...+. +..+++..+..|.++...+........
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r------------------------------- 131 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY------------------------------- 131 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC-------------------------------
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc-------------------------------
Confidence 11 111 2334555543322 256788899999999988764211110
Q ss_pred CcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeccCCcCeEEEE
Q 046871 196 NSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTEKVVRVWDPRT---------GSKTIKLRGHTDNIRSLL 266 (764)
Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~l~ 266 (764)
..+.....+.. .+.+..+......+.++..+.+|.+..++... |.....+. ..+.|.++.
T Consensus 132 ---------~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~ 200 (323)
T 1wp5_A 132 ---------SKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQ 200 (323)
T ss_dssp ---------SSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEE
T ss_pred ---------cCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEE
Confidence 00111111222 24454554444556788888888888776532 11222233 234566665
Q ss_pred EcCCCC-EEEEEeCCCcEEEEeCC
Q 046871 267 LDSTGR-YCLSGSSDSMIRLWDLG 289 (764)
Q Consensus 267 ~spdg~-~l~sgs~Dg~I~iwdl~ 289 (764)
.-+++. .+++.+..|..+..++.
T Consensus 201 ~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 201 LITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEcCCCcEEEEEECCCceEEEEHH
Confidence 444445 78888888888877764
No 379
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=50.07 E-value=9.7 Score=29.42 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=18.0
Q ss_pred cEEEEeCC--EecCCCCCHHHH
Q 046871 724 SIEILCNN--QVLSPDMSLATV 743 (764)
Q Consensus 724 ~~el~c~~--~~~~~~~~l~tv 743 (764)
.+..++|| +.+|++||+|..
T Consensus 48 ~~rVr~~G~~~~~pr~~tvae~ 69 (83)
T 2inc_C 48 ILRVRRHEDGTLFPRGMIVSDA 69 (83)
T ss_dssp EEEEEETTTCCEECTTCBGGGS
T ss_pred eEEEEecCCccCCCCCCEeecc
Confidence 49999999 999999999864
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.61 E-value=34 Score=41.47 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYA 298 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~ 298 (764)
.+.+++..++..++++-+.|+++|+|++.+++|+.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556677788999999999999999999999998865
No 381
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=46.19 E-value=2.1e+02 Score=27.53 Aligned_cols=144 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeC-------CCCeeeEEEeee
Q 046871 228 SGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDL-------GQQRCIHSYAVH 300 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl-------~~~~~~~~l~~h 300 (764)
+...+++.+.+|.|+--..........-..-.+.+..+........|+..+..|.++-+.. ..|+.+..+-.-
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CCCEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Q ss_pred --cCceEEEEEcCCCCEEEEecCCCcEEEEeC-------CCCeEEEEeecCCCeEEEEee-CCc--eEEEeCCCcEEEee
Q 046871 301 --TDSVWALASTPTFSHVYSGGRDLSLYLTDL-------ATRESLLLCTGEHPILQLALH-DDN--IWVATTDSSVHRWP 368 (764)
Q Consensus 301 --~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~-------~~~~~~~~~~~~~~V~~l~~s-pd~--l~~~s~dg~I~iwd 368 (764)
.+.|.++....+..+|+.++..|.++...+ +.+.....+...+.+..+... .+. ++..+.+|.+..++
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Q ss_pred CCC
Q 046871 369 AEG 371 (764)
Q Consensus 369 ~~~ 371 (764)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
No 382
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.08 E-value=2.6e+02 Score=28.61 Aligned_cols=234 Identities=13% Similarity=0.113 Sum_probs=122.3
Q ss_pred CeEEEEeCCCcEEEecCCCCCe----------eeeeccc-cCCceEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCC
Q 046871 96 NTLVSCSSDTTLKTWNCSSDGT----------CIRTLRQ-HSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSK 164 (764)
Q Consensus 96 ~~l~s~s~Dg~V~vWd~~~~~~----------~~~~l~~-h~~~V~~l~~~p~~~~~lasg~~dg~I~iwdl~~~~~~~~ 164 (764)
...+....||.|..|-....++ ....+.. ....+..++++ ......+.-..||.|+.|-.........
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~-~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEEC-TTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEEC-cCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 3566667889999996322211 1111221 12234556665 4556666667899999997654321110
Q ss_pred CCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceecc-CCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 046871 165 SGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAK-GHKESVYALAMNDSGNLLVSGGTEKVVRV 243 (764)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~V~~l~~sp~g~~l~sgs~dg~I~i 243 (764)
.. ... ...+.... .....|..++.. ....++-..+|.|..
T Consensus 142 g~----------------~~~---------------------~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 142 GN----------------RSP---------------------CDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp SS----------------CCC---------------------EEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CC----------------Ccc---------------------CcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 00 000 00000011 112356666654 445566667888988
Q ss_pred EeCCC-Cc----------eeEEecc-CCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------ee-eEEEeee
Q 046871 244 WDPRT-GS----------KTIKLRG-HTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQ----------RC-IHSYAVH 300 (764)
Q Consensus 244 wd~~~-~~----------~~~~l~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~----------~~-~~~l~~h 300 (764)
|-... ++ ....+.. ....|..++......+.+.-..||.|+.|-.... .. ...+...
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 86432 11 1111111 1235677766543356666778999999964321 01 1111111
Q ss_pred -cCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC--------e---EEEEee--cCCCeEEEEeeCCceEEEeCCCcEEE
Q 046871 301 -TDSVWALASTPTFSHVYSGGRDLSLYLTDLATR--------E---SLLLCT--GEHPILQLALHDDNIWVATTDSSVHR 366 (764)
Q Consensus 301 -~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~--------~---~~~~~~--~~~~V~~l~~spd~l~~~s~dg~I~i 366 (764)
...|..++.... +.+.-..||.|+.|=.... . ....+. ....|..++......++.+.||.|+.
T Consensus 263 ~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~ 340 (389)
T 3kci_A 263 TGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340 (389)
T ss_dssp TTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred CCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEE
Confidence 123666665433 4444567899999964321 0 111111 13457788777777666789999999
Q ss_pred eeCCC
Q 046871 367 WPAEG 371 (764)
Q Consensus 367 wd~~~ 371 (764)
|=...
T Consensus 341 wG~n~ 345 (389)
T 3kci_A 341 WGDND 345 (389)
T ss_dssp EECCT
T ss_pred eeCCC
Confidence 97654
No 383
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=42.76 E-value=3e+02 Score=28.35 Aligned_cols=147 Identities=10% Similarity=0.069 Sum_probs=80.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-c----------eeEEecc-CCcCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 046871 219 SVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-S----------KTIKLRG-HTDNIRSLLLDSTGRYCLSGSSDSMIRLW 286 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-~----------~~~~l~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 286 (764)
.|..++.. ..+.++-..+|.|..|-.... + ....+.. ....|..++.. ..+.+.-+.+|.|+.|
T Consensus 174 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~w 249 (406)
T 4d9s_A 174 RIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTY 249 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred cEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEe
Confidence 56666654 345555667888888854321 1 0111111 12356666654 3345555678999999
Q ss_pred eCCCC-e---------e-eEEEee-ecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC------------eEEEE-eec
Q 046871 287 DLGQQ-R---------C-IHSYAV-HTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR------------ESLLL-CTG 341 (764)
Q Consensus 287 dl~~~-~---------~-~~~l~~-h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~------------~~~~~-~~~ 341 (764)
-.... + . ...+.. ....|..++.-. .+.+.-..||.|+.|=.... .+... +..
T Consensus 250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 327 (406)
T 4d9s_A 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW--RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG
T ss_pred eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecC--CEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC
Confidence 64321 0 0 111111 122366665543 34455567889999954321 01111 113
Q ss_pred CCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 342 EHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 342 ~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
...|..++.-....++-+.++.|+.|=...
T Consensus 328 ~~~v~~va~G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 328 DQKVVQVSCGWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp GCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence 456778877777777778899999997643
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.91 E-value=71 Score=35.28 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=43.8
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceeEEeccCC-cCeEEEEEcCCCCEEEEE
Q 046871 219 SVYALAMNDSGNLLVSGGTE------------KVVRVWDPRTGSKTIKLRGHT-DNIRSLLLDSTGRYCLSG 277 (764)
Q Consensus 219 ~V~~l~~sp~g~~l~sgs~d------------g~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~sg 277 (764)
..-.|+|++.|+++++-..+ ..+.+.+..+++...-+.++. ..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999976665432 246777888887766666543 589999999999988765
No 385
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.00 E-value=2.9e+02 Score=27.34 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=89.6
Q ss_pred CcEEEEEEc---CCCCEEEEEeCCCeEEEEeCCC-------CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 046871 218 ESVYALAMN---DSGNLLVSGGTEKVVRVWDPRT-------GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWD 287 (764)
Q Consensus 218 ~~V~~l~~s---p~g~~l~sgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 287 (764)
..|.++... .+..+++..+.+|.++...+.. +.....+..+ +.+..+....+...++..+.+|.+..++
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 345554432 3456788999999999886532 2222334444 5666655555566788888899988887
Q ss_pred CCC---------CeeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC-------eEEEEee---cCCCeEEE
Q 046871 288 LGQ---------QRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR-------ESLLLCT---GEHPILQL 348 (764)
Q Consensus 288 l~~---------~~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~-------~~~~~~~---~~~~V~~l 348 (764)
... |.....+. ..+.|.++....++..+++.+..|.++..++..- .-+..+. ..+.+..+
T Consensus 174 ~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~ 252 (307)
T 1zi0_A 174 ESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 252 (307)
T ss_dssp GGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEE
T ss_pred HHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEE
Confidence 632 11111222 2345667665555667888899999998877321 1122221 22455444
Q ss_pred Ee-eCCc-eEEEeCCCcEEEeeCCC
Q 046871 349 AL-HDDN-IWVATTDSSVHRWPAEG 371 (764)
Q Consensus 349 ~~-spd~-l~~~s~dg~I~iwd~~~ 371 (764)
.. .++. ++..+.+|.+..+++..
T Consensus 253 ~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 253 VQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeCCCceEEEEcCCCcEEEEeccc
Confidence 33 3333 77778888777666654
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.35 E-value=1.3e+02 Score=32.97 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCceeEEeccC-CcCeEEEEEcCCCCEEEEEe
Q 046871 218 ESVYALAMNDSGNLLVSGGT------------EKVVRVWDPRTGSKTIKLRGH-TDNIRSLLLDSTGRYCLSGS 278 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~------------dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~sgs 278 (764)
.....|+|.++|.+.++... ...|..++..+++....+.+. ...++.++|+||+++|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987774432 226788888888876666543 35689999999999888764
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.00 E-value=98 Score=34.17 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=42.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCeeeEEEeeec-CceEEEEEcCCCCEEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSSD------------SMIRLWDLGQQRCIHSYAVHT-DSVWALASTPTFSHVYSG 319 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~D------------g~I~iwdl~~~~~~~~l~~h~-~~V~~l~~spd~~~l~sg 319 (764)
..-.|+|+++|+++++-..+ ..+.+.+..+++..+-+..+. ..++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34668999999966654322 235666777777766666654 469999999999887764
No 388
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=35.60 E-value=3.8e+02 Score=27.49 Aligned_cols=140 Identities=9% Similarity=0.090 Sum_probs=77.8
Q ss_pred CcEEEEEEc---CC----CCEEEEEe-CCCeEEEEeCCCCceeEEec--------------cC----CcCeEEEEEcCC-
Q 046871 218 ESVYALAMN---DS----GNLLVSGG-TEKVVRVWDPRTGSKTIKLR--------------GH----TDNIRSLLLDST- 270 (764)
Q Consensus 218 ~~V~~l~~s---p~----g~~l~sgs-~dg~I~iwd~~~~~~~~~l~--------------~h----~~~V~~l~~spd- 270 (764)
+.+..+++. +. +.++..+. ....|.++|+.+++.-+.+. +. ...|..|+++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 445666665 21 23333333 46789999998886544431 10 247888999998
Q ss_pred ---CCEEEEEeCCCcEEEEeCC-----CC---eeeEEEeeecC---ceEEEEEc-CCCCEEEEecCCCcEEEEeCCC-C-
Q 046871 271 ---GRYCLSGSSDSMIRLWDLG-----QQ---RCIHSYAVHTD---SVWALAST-PTFSHVYSGGRDLSLYLTDLAT-R- 333 (764)
Q Consensus 271 ---g~~l~sgs~Dg~I~iwdl~-----~~---~~~~~l~~h~~---~V~~l~~s-pd~~~l~sgs~Dg~I~iwd~~~-~- 333 (764)
++.|+-....+. ++|.+. .. ..++.+ +..+ .-..++++ .+|.++++--....|..|+..+ .
T Consensus 232 ~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~ 309 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPL 309 (381)
T ss_dssp TTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSB
T ss_pred CCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcc
Confidence 777776654442 344332 11 222222 2222 23456675 6777777878889999999876 1
Q ss_pred --eEEEEee-cC--CCeEEEEeeCCc-eEEEe
Q 046871 334 --ESLLLCT-GE--HPILQLALHDDN-IWVAT 359 (764)
Q Consensus 334 --~~~~~~~-~~--~~V~~l~~spd~-l~~~s 359 (764)
+....+. .. ..+..+.+..++ |++-+
T Consensus 310 ~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 310 RMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 1222222 22 124566665555 54444
No 389
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.52 E-value=54 Score=36.96 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeeEEEee
Q 046871 261 NIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAV 299 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~~~~~~~l~~ 299 (764)
.|.++.+ +..++++-+.|.++|+||+.+++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555444 478999999999999999999999988765
No 390
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=33.07 E-value=3.7e+02 Score=26.58 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCeEEEEeCC-------CCceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------C
Q 046871 228 SGNLLVSGGTEKVVRVWDPR-------TGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ---------Q 291 (764)
Q Consensus 228 ~g~~l~sgs~dg~I~iwd~~-------~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~---------~ 291 (764)
+..+++..+..|.++...+. .|.....+.. .+.+..+....++..++..+.+|.+..+.... |
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 45678888999999888763 2333334443 45666666655566788899999998887643 2
Q ss_pred eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 046871 292 RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLA 331 (764)
Q Consensus 292 ~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~ 331 (764)
.....+. ..+.|.++....++..+++.+..|..+..++.
T Consensus 192 v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 192 VCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred eEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 2222232 23456666665556678888889999888874
No 391
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=32.73 E-value=3.5e+02 Score=26.21 Aligned_cols=199 Identities=12% Similarity=0.037 Sum_probs=107.4
Q ss_pred ccceeEEEEeC-CCeEEEEeCCCcEE---EecCCCCCeeeeeccccCCceEEEEEecC-CCcEEEEEeCCCeEEEEeCCC
Q 046871 84 VDWVNDAVLVG-DNTLVSCSSDTTLK---TWNCSSDGTCIRTLRQHSDYVTCLAAAEK-NSNIVASGGLGAEVFIWDIEA 158 (764)
Q Consensus 84 ~~~V~~v~~s~-d~~l~s~s~Dg~V~---vWd~~~~~~~~~~l~~h~~~V~~l~~~p~-~~~~lasg~~dg~I~iwdl~~ 158 (764)
.+.+..+.... ...|+.-+.+|.++ +|++.. ......+. ....|..+.. +. +...++..+.+|.++...+..
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~-~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ-GSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT-SEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc-CcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence 34455444433 34666667777655 344421 11111132 3445655533 22 567899999999999998865
Q ss_pred CCCCCCCCCCCcCCcCccccCCCCCCcccceeecCCCCcccccccCCCCccceeccCCCCcEEEEEEcCCCCEEEEEeCC
Q 046871 159 ALAPSKSGDAMEDDCSTGINGSGNSLPVTSLRTIGSSNSISAHTSQSQGYVPIAAKGHKESVYALAMNDSGNLLVSGGTE 238 (764)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sgs~d 238 (764)
.. ... .+.....+. ..+.+..+........++..+..
T Consensus 100 ~~-~~~-----------------------------------------~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~ 136 (276)
T 3no0_A 100 FE-YKA-----------------------------------------QGMPIIKLT-EGDEVVSIASSVDETHILLFTKK 136 (276)
T ss_dssp TT-TCS-----------------------------------------TTEECSCCC-TTCCEEEEEECCSSCEEEEEETT
T ss_pred hh-hhc-----------------------------------------CCeEEEecC-CCCEEEEEEEeCCCCEEEEEECC
Confidence 32 100 011111122 23445555555556678888888
Q ss_pred CeEEEEeCCC---------CceeEEeccCCcCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeeeEEEeeecC
Q 046871 239 KVVRVWDPRT---------GSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQ-------QRCIHSYAVHTD 302 (764)
Q Consensus 239 g~I~iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwdl~~-------~~~~~~l~~h~~ 302 (764)
|.+..++... |.....+.. .+.|.++...+++..++..+..|.++...+.. ++-+..+ ...+
T Consensus 137 G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~ 214 (276)
T 3no0_A 137 GRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKD 214 (276)
T ss_dssp SEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSS
T ss_pred CEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCC
Confidence 9887776421 222223332 35666666666677899999999999887632 2222223 2233
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEE--EeC
Q 046871 303 SVWALASTPTFSHVYSGGRDLSLYL--TDL 330 (764)
Q Consensus 303 ~V~~l~~spd~~~l~sgs~Dg~I~i--wd~ 330 (764)
.+..+....+...++..+.+|.+.. ++.
T Consensus 215 ~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 215 TLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp CEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred cEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 4444433233345555566666655 554
No 392
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.74 E-value=2e+02 Score=31.54 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=42.0
Q ss_pred CeEEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCeeeEEEeee-cCceEEEEEcCCCCEEEEe
Q 046871 261 NIRSLLLDSTGRYCLSGSS------------DSMIRLWDLGQQRCIHSYAVH-TDSVWALASTPTFSHVYSG 319 (764)
Q Consensus 261 ~V~~l~~spdg~~l~sgs~------------Dg~I~iwdl~~~~~~~~l~~h-~~~V~~l~~spd~~~l~sg 319 (764)
....|+|+++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+.+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4567999999987773321 125677777777766655543 3468999999999988865
No 393
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=26.52 E-value=5.9e+02 Score=26.82 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=57.0
Q ss_pred eeEEEeecccccCCCc-EEEEEeCCCcEEEEeCCCCC-Cccceeec---------ccccceeEEEEeCC----CeEE-EE
Q 046871 38 INCLAVLKSSVSNGVD-YLFTGSRDGTLKRWSLADDV-GSCSATFE---------SHVDWVNDAVLVGD----NTLV-SC 101 (764)
Q Consensus 38 V~~l~~~~~~~S~d~~-~L~sgs~Dg~I~iWd~~~~~-~~~~~~l~---------~h~~~V~~v~~s~d----~~l~-s~ 101 (764)
-..|+| .|||. .|+++.+.|.|++++.+... ...+..+. ........|+|+|+ +.|. +-
T Consensus 16 P~~~a~-----~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 16 PVGALH-----SGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp EEEEEC-----CSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred ceEEEE-----CCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 457777 58886 55666788999999754321 11222221 11456788999997 4333 32
Q ss_pred eC--C----------CcEEEecCCCC---------Ceeeeecc--ccCCceEEEEEecCCCcEEEEEeCCC
Q 046871 102 SS--D----------TTLKTWNCSSD---------GTCIRTLR--QHSDYVTCLAAAEKNSNIVASGGLGA 149 (764)
Q Consensus 102 s~--D----------g~V~vWd~~~~---------~~~~~~l~--~h~~~V~~l~~~p~~~~~lasg~~dg 149 (764)
+. + ..|.-|.+... .+.+..+. ........|+|. +|+.+.++.+..+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-pDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-PDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-TTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-CCCcEEEEeCCCC
Confidence 21 1 13444554221 11222221 122346789999 6777777666543
No 394
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=25.21 E-value=7.6e+02 Score=27.69 Aligned_cols=91 Identities=4% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCCcEEEEeCCCC-------eeeEE-Eee-ecCceEEEEEcCCCCEEEEecCCC--cEEEEeCCCCe-EEEE---eecCC
Q 046871 279 SDSMIRLWDLGQQ-------RCIHS-YAV-HTDSVWALASTPTFSHVYSGGRDL--SLYLTDLATRE-SLLL---CTGEH 343 (764)
Q Consensus 279 ~Dg~I~iwdl~~~-------~~~~~-l~~-h~~~V~~l~~spd~~~l~sgs~Dg--~I~iwd~~~~~-~~~~---~~~~~ 343 (764)
..+.|...|+.++ +.... +.. ....+..+.+..+ .++++...++ .|+++++.++. .... +....
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 4667888888653 12233 322 2235778888865 5666777676 46777776664 1222 22234
Q ss_pred CeEEEEeeCCc---eEEEeC---CCcEEEeeCC
Q 046871 344 PILQLALHDDN---IWVATT---DSSVHRWPAE 370 (764)
Q Consensus 344 ~V~~l~~spd~---l~~~s~---dg~I~iwd~~ 370 (764)
.+.....++++ +++.+. -+.+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56666666665 333332 3567777776
No 395
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.59 E-value=2.9e+02 Score=22.54 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=11.1
Q ss_pred EEEeeCCc-eEEEeCCCcEEEeeC
Q 046871 347 QLALHDDN-IWVATTDSSVHRWPA 369 (764)
Q Consensus 347 ~l~~spd~-l~~~s~dg~I~iwd~ 369 (764)
.+.+..+| |+.-..++.+ +|..
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S 82 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVS 82 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEEC
T ss_pred EEEEeCCCcEEEECCCCCE-EEEC
Confidence 45566666 5444444433 5643
No 396
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.00 E-value=6.5e+02 Score=25.74 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=80.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-c----------------------eeEEeccCCcCeEEEEEcCCCCEE
Q 046871 218 ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-S----------------------KTIKLRGHTDNIRSLLLDSTGRYC 274 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-~----------------------~~~~l~~h~~~V~~l~~spdg~~l 274 (764)
..|..++.. ....++-..+|.|+.|-.... + +..........|..++.... ..+
T Consensus 179 ~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~ 255 (423)
T 3mvd_K 179 TVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTF 255 (423)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEE
T ss_pred CcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEE
Confidence 456666654 345556667888999853221 0 11111112234566655422 223
Q ss_pred EEEeCCCcEEEEeCCCC-----------eeeEEEeeecCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC---------e
Q 046871 275 LSGSSDSMIRLWDLGQQ-----------RCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATR---------E 334 (764)
Q Consensus 275 ~sgs~Dg~I~iwdl~~~-----------~~~~~l~~h~~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~~---------~ 334 (764)
+.-..||.|+.|-.... ............|..|+.-. .+.+.-..||.|+.|=.... .
T Consensus 256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~alt~~G~v~~wG~n~~GqLG~g~~~~ 333 (423)
T 3mvd_K 256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333 (423)
T ss_dssp EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEEEETTCCEEEEECCGGGTTCSSSCCS
T ss_pred EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEEEeCCCcEEEEECCCCCCCCCCCccc
Confidence 33367899999864321 11111111234566666543 34455567899999964211 1
Q ss_pred ---EEEEee-cCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 335 ---SLLLCT-GEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 335 ---~~~~~~-~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
....+. ....|..++......++-+.+|.|+.|=...
T Consensus 334 ~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 334 VVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred cccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence 111111 1236888888877766668999999997654
No 397
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=21.76 E-value=7 Score=40.98 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCcEEEEeeCCCcE--EEEEccccEEeeecCCCc-hhhhhhhhhcccccccceEEeeCceeEEEEe----CCCCccCccc
Q 046871 429 NRRHVLTKDAAGSV--KLWEITRGVVVEDYGKAS-FEEKKEELFEMVSIPAWFTVDTRLGSLSVHL----DTPQCFSAEM 501 (764)
Q Consensus 429 dg~~l~t~s~dG~V--~lWdi~tg~~i~~~~~~~-f~~~~~~~~~~~~~~~w~~vd~~~g~l~v~l----~~~~~f~~~~ 501 (764)
||+..+.-..+|.| +-|+-.+-..|.+.-... -....+..+++.....-|.||...|....+| .++.+..|+.
T Consensus 47 ~Gq~~~v~~~~g~v~ay~ws~~~W~~iG~Vv~~~~~~~~~k~~~~Gk~YDyvf~Vdi~~g~p~lkLpyN~~~np~~~A~~ 126 (425)
T 3pst_A 47 EGQIVVVKSPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADN 126 (425)
T ss_dssp ---------------------------------------CCEEETTEEESEEEEECCSTTCCCEEEEECTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCEEEEEEcCCceeEEeEEecCCCCCCCCceeecCcccceEEEEEcCCCCccccCCccCCCCHHHHHHH
Confidence 56655555556666 445432222222221100 1112345566777889999999998865555 6788889999
Q ss_pred ccccccCCCCCCCcc
Q 046871 502 YSADLQIAGKPEDDK 516 (764)
Q Consensus 502 ~a~~~~~~~~~~d~~ 516 (764)
|..+.+|+..+-||-
T Consensus 127 Fi~~~~L~~~y~~qi 141 (425)
T 3pst_A 127 FLARYELPMSYRDQV 141 (425)
T ss_dssp HHHHHTCCGGGHHHH
T ss_pred HHHHcCCCHHHHHHH
Confidence 998888876555543
No 398
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=21.75 E-value=45 Score=20.21 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 046871 524 LKGLLAHWLAKRK 536 (764)
Q Consensus 524 l~~l~~~~~~~~~ 536 (764)
+-+||.+|++.|.
T Consensus 16 ivalF~hWL~~r~ 28 (30)
T 4b19_A 16 AIAFFSYWLSRRN 28 (30)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcc
Confidence 5689999998753
No 399
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=20.55 E-value=6.9e+02 Score=25.48 Aligned_cols=148 Identities=11% Similarity=0.039 Sum_probs=81.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ce---------------------eEEecc------CCcCeEEEEEcC
Q 046871 218 ESVYALAMNDSGNLLVSGGTEKVVRVWDPRTG-SK---------------------TIKLRG------HTDNIRSLLLDS 269 (764)
Q Consensus 218 ~~V~~l~~sp~g~~l~sgs~dg~I~iwd~~~~-~~---------------------~~~l~~------h~~~V~~l~~sp 269 (764)
..|..++.. ....+.-..+|.|..|-.... +. ...... ....|..|+...
T Consensus 164 ~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~ 241 (413)
T 1a12_A 164 VPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET
T ss_pred CCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC
Confidence 456666654 345555567888888854321 10 000110 224577776654
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-e---------e-eEEEeeec---CceEEEEEcCCCCEEEEecCCCcEEEEeCCC---
Q 046871 270 TGRYCLSGSSDSMIRLWDLGQQ-R---------C-IHSYAVHT---DSVWALASTPTFSHVYSGGRDLSLYLTDLAT--- 332 (764)
Q Consensus 270 dg~~l~sgs~Dg~I~iwdl~~~-~---------~-~~~l~~h~---~~V~~l~~spd~~~l~sgs~Dg~I~iwd~~~--- 332 (764)
+ +.+.-..||.|+.|-.... + . ...+.... ..|..++... .+.+.-..||.|+.|-...
T Consensus 242 ~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~--~hs~al~~~G~v~~wG~n~~Gq 317 (413)
T 1a12_A 242 Y--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQ--HHTVCMDSEGKAYSLGRAEYGR 317 (413)
T ss_dssp T--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECS--SEEEEEETTSCEEEEECCGGGT
T ss_pred C--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEeccc--ceEEEEeCCCCEEEeeCCCCCc
Confidence 3 4444557899999965421 0 0 11111111 2366666543 3444555789999996421
Q ss_pred ---C----e--EEEEeecCCCeEEEEeeCCceEEEeCCCcEEEeeCCC
Q 046871 333 ---R----E--SLLLCTGEHPILQLALHDDNIWVATTDSSVHRWPAEG 371 (764)
Q Consensus 333 ---~----~--~~~~~~~~~~V~~l~~spd~l~~~s~dg~I~iwd~~~ 371 (764)
+ . ....+..-..|..++......++-+.||.|+.|-...
T Consensus 318 LG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 318 LGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp TCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred cCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCC
Confidence 1 1 1112222336888887776667778899999997653
Done!