Query 046873
Match_columns 299
No_of_seqs 160 out of 1099
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 5.8E-59 1.3E-63 420.2 27.6 230 20-253 1-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 2.9E-57 6.3E-62 409.0 25.0 225 19-251 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 7.7E-44 1.7E-48 318.6 24.7 199 31-252 13-223 (223)
4 cd07308 lectin_leg-like legume 99.9 1.5E-25 3.2E-30 200.1 23.5 186 32-251 20-216 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.9 3.3E-21 7.2E-26 175.0 22.4 194 31-255 19-225 (248)
6 cd06902 lectin_ERGIC-53_ERGL E 99.9 6.1E-21 1.3E-25 171.1 23.1 190 32-252 22-223 (225)
7 PF03388 Lectin_leg-like: Legu 99.8 2.1E-17 4.6E-22 148.7 23.3 192 32-250 22-225 (229)
8 cd06903 lectin_EMP46_EMP47 EMP 99.8 5.5E-17 1.2E-21 144.5 22.2 181 32-252 21-213 (215)
9 KOG3839 Lectin VIP36, involved 99.7 1.9E-15 4.1E-20 139.0 16.8 190 31-250 71-272 (351)
10 KOG3838 Mannose lectin ERGIC-5 99.5 1E-12 2.3E-17 123.0 17.0 187 33-250 55-252 (497)
11 cd06900 lectin_VcfQ VcfQ bacte 99.2 1.8E-09 4E-14 96.4 19.0 195 43-250 30-253 (255)
12 PF08693 SKG6: Transmembrane a 95.7 0.018 3.9E-07 37.5 3.7 30 266-295 10-39 (40)
13 PF15065 NCU-G1: Lysosomal tra 95.3 0.018 3.8E-07 55.1 3.9 70 226-298 279-350 (350)
14 PF04478 Mid2: Mid2 like cell 91.8 0.26 5.6E-06 41.5 4.3 22 267-288 48-71 (154)
15 KOG3514 Neurexin III-alpha [Si 90.9 1.6 3.4E-05 47.1 9.8 152 31-231 803-963 (1591)
16 PF15102 TMEM154: TMEM154 prot 86.8 0.7 1.5E-05 38.7 3.3 6 292-297 82-87 (146)
17 smart00282 LamG Laminin G doma 85.8 16 0.00035 29.0 11.7 26 175-202 57-82 (135)
18 PF14610 DUF4448: Protein of u 82.9 0.94 2E-05 39.4 2.5 28 268-297 159-186 (189)
19 PTZ00382 Variant-specific surf 82.7 1 2.2E-05 35.1 2.3 30 266-295 64-95 (96)
20 cd00110 LamG Laminin G domain; 80.9 27 0.00058 27.9 14.4 25 176-202 76-100 (151)
21 PF05454 DAG1: Dystroglycan (D 80.7 0.51 1.1E-05 44.1 0.0 27 271-298 151-177 (290)
22 PF12877 DUF3827: Domain of un 79.6 1 2.2E-05 46.1 1.6 35 263-297 265-299 (684)
23 PHA03265 envelope glycoprotein 79.5 0.72 1.6E-05 43.8 0.6 29 265-296 348-376 (402)
24 PF12191 stn_TNFRSF12A: Tumour 78.1 0.69 1.5E-05 37.7 0.0 33 266-299 76-108 (129)
25 PF06697 DUF1191: Protein of u 76.9 15 0.00032 34.2 8.3 26 84-109 66-92 (278)
26 PF01034 Syndecan: Syndecan do 76.1 0.84 1.8E-05 32.8 -0.0 11 286-296 28-38 (64)
27 PF03302 VSP: Giardia variant- 72.9 2.5 5.3E-05 41.3 2.3 32 264-295 363-396 (397)
28 PF01299 Lamp: Lysosome-associ 65.7 2.7 5.9E-05 39.4 0.9 30 268-297 270-300 (306)
29 PF14575 EphA2_TM: Ephrin type 64.3 0.86 1.9E-05 33.9 -2.2 8 289-296 21-28 (75)
30 PF02480 Herpes_gE: Alphaherpe 59.4 3 6.6E-05 41.3 0.0 11 99-109 145-155 (439)
31 PF01102 Glycophorin_A: Glycop 58.5 0.78 1.7E-05 37.4 -3.6 13 285-297 82-94 (122)
32 PF06024 DUF912: Nucleopolyhed 55.0 6.6 0.00014 30.8 1.2 11 286-296 81-91 (101)
33 PF13908 Shisa: Wnt and FGF in 54.6 11 0.00024 32.3 2.7 19 266-284 77-95 (179)
34 PF06365 CD34_antigen: CD34/Po 54.3 7.2 0.00016 34.6 1.5 28 269-296 101-129 (202)
35 PF03229 Alpha_GJ: Alphavirus 46.4 3.6 7.8E-05 33.1 -1.5 25 267-291 82-106 (126)
36 PF12768 Rax2: Cortical protei 44.6 8.9 0.00019 35.7 0.6 28 267-294 228-257 (281)
37 smart00159 PTX Pentraxin / C-r 42.7 59 0.0013 28.4 5.5 29 175-203 85-113 (206)
38 PF05337 CSF-1: Macrophage col 38.6 10 0.00022 35.1 0.0 25 267-291 224-248 (285)
39 PF12248 Methyltransf_FA: Farn 38.0 1.4E+02 0.003 23.0 6.4 47 177-234 49-95 (102)
40 PF05545 FixQ: Cbb3-type cytoc 36.2 9.4 0.0002 25.6 -0.5 10 286-295 25-34 (49)
41 PTZ00208 65 kDa invariant surf 34.4 11 0.00024 36.7 -0.5 30 266-296 385-414 (436)
42 PF05808 Podoplanin: Podoplani 34.2 13 0.00029 31.6 0.0 29 269-297 130-158 (162)
43 PF01034 Syndecan: Syndecan do 33.6 12 0.00027 26.9 -0.3 29 267-295 12-40 (64)
44 TIGR01478 STEVOR variant surfa 32.2 9.8 0.00021 35.4 -1.2 24 274-297 262-286 (295)
45 PTZ00370 STEVOR; Provisional 31.3 10 0.00022 35.3 -1.2 24 274-297 258-282 (296)
46 PF14991 MLANA: Protein melan- 29.9 16 0.00035 29.3 -0.2 26 270-296 26-51 (118)
47 PF15102 TMEM154: TMEM154 prot 29.8 24 0.00053 29.6 0.8 31 268-299 56-86 (146)
48 PLN03150 hypothetical protein; 28.8 36 0.00077 35.2 2.0 29 268-296 544-572 (623)
49 PHA03264 envelope glycoprotein 27.5 59 0.0013 31.5 3.1 32 266-297 359-392 (416)
50 PF11857 DUF3377: Domain of un 27.4 54 0.0012 24.3 2.2 18 271-288 32-49 (74)
51 smart00560 LamGL LamG-like jel 27.4 87 0.0019 25.1 3.8 24 180-203 61-84 (133)
52 cd00152 PTX Pentraxins are pla 27.2 83 0.0018 27.3 3.8 28 176-203 86-113 (201)
53 TIGR03503 conserved hypothetic 26.8 46 0.00099 32.3 2.3 15 282-296 359-373 (374)
54 KOG1094 Discoidin domain recep 24.7 2E+02 0.0044 30.1 6.3 28 264-293 387-414 (807)
55 PF15099 PIRT: Phosphoinositid 24.1 22 0.00049 29.0 -0.3 7 232-238 37-43 (129)
56 PF08374 Protocadherin: Protoc 22.5 30 0.00066 30.9 0.2 18 265-282 35-52 (221)
57 PF04689 S1FA: DNA binding pro 22.5 27 0.00059 25.1 -0.1 24 266-289 11-34 (69)
58 PHA03286 envelope glycoprotein 22.2 14 0.0003 36.6 -2.2 9 137-145 155-163 (492)
59 PTZ00382 Variant-specific surf 22.2 1.1E+02 0.0024 23.7 3.2 6 292-297 89-94 (96)
60 PF04901 RAMP: Receptor activi 20.7 33 0.00072 27.6 0.0 14 285-298 98-111 (113)
61 TIGR01495 ETRAMP Plasmodium ri 20.1 36 0.00078 25.9 0.1 30 267-296 50-80 (85)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=5.8e-59 Score=420.20 Aligned_cols=230 Identities=45% Similarity=0.723 Sum_probs=206.7
Q ss_pred eeEEeCCCCCCCCCeEEecceEee-CCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCc
Q 046873 20 VSFRMSSFDSNRKDIIYQGDAVPS-VGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYG 98 (299)
Q Consensus 20 ~~F~f~~F~~~~~~l~l~GdA~~~-~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~g 98 (299)
++|+|++|.....+|.++|+|.+. ++.|+||++.+..+++|||||++||+||++.+++++||+|+|+|+|.+.....+|
T Consensus 1 ~~f~f~~f~~~~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~g 80 (236)
T cd06899 1 LSFNFNGFSSDQSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLGG 80 (236)
T ss_pred CceecCCCCCCCCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCCC
Confidence 479999998645789999999998 7999999982127899999999999999999999999999999999987667789
Q ss_pred cceEEEEcccCCCCCCCCCCCccccccCCCCCCCCccEEEEEEecccCCC-CCCCCCCCceEEecCCCcceeeeeccc--
Q 046873 99 HGLVFFLAPVGFQIPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSE-WDPSGVQDHVGINNNSIASAVHTRWNA-- 175 (299)
Q Consensus 99 DGlAF~l~p~~~~~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~-~Dp~~~~~HVgIdins~~S~~~~~~~~-- 175 (299)
|||||+|+|.+.. +.+..|++|||.+.++++...++.|||||||++|.+ +||+. +|||||+|++.|..+.+|..
T Consensus 81 dGlAF~i~~~~~~-~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~--nHigIdvn~~~S~~~~~~~~~~ 157 (236)
T cd06899 81 DGLAFFLAPTDSL-PPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDD--NHVGIDVNSLVSVKAGYWDDDG 157 (236)
T ss_pred CeEEEEEecCCCC-CCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCC--CeEEEEcCCcccceeecccccc
Confidence 9999999998743 346889999999887666678899999999999987 69999 99999999998888777753
Q ss_pred -ccCCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEEEEEEec
Q 046873 176 -SFHSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILESWEFSSS 253 (299)
Q Consensus 176 -~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~IlsWsF~s~ 253 (299)
++.+|+.++|||+||+.+++|+|+|++.+. .+|..|++++.+||+++|+++|||||||+||...|.|+|++|+|+++
T Consensus 158 ~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~-~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 158 GKLKSGKPMQAWIDYDSSSKRLSVTLAYSGV-AKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred ccccCCCeEEEEEEEcCCCCEEEEEEEeCCC-CCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEcC
Confidence 368999999999999999999999998764 47889999999999999999999999999999999999999999986
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=2.9e-57 Score=409.03 Aligned_cols=225 Identities=39% Similarity=0.594 Sum_probs=199.8
Q ss_pred eeeEEeCCCCCCCCCeEEecceEe-eCCeEEecCCCCcc-ccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeec--CC
Q 046873 19 SVSFRMSSFDSNRKDIIYQGDAVP-SVGAIELIKNYQYL-CRVGWATYADRVPLWNSDTGELADFSTKFSFQINTL--DR 94 (299)
Q Consensus 19 ~~~F~f~~F~~~~~~l~l~GdA~~-~~g~l~LT~~~~~~-~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~--~~ 94 (299)
+++|+|++|. +..++.++|+|.+ .+++|+||++ .. +++|||||++||+|||+.++++++|+|+|+|+|... ..
T Consensus 1 ~~~F~~~~F~-~~~~~~l~G~A~~~~~~~l~LT~~--~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~ 77 (236)
T PF00139_consen 1 SVSFSFPSFS-NSSNLTLNGDASISSNGSLQLTPD--STNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSS 77 (236)
T ss_dssp EEEEEESSBT-TGTTEEEEETEEEETTSEEESSTB--ETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSS
T ss_pred CceEEcCCCC-CCCceEEEeeEEeccCCeEEcCCC--CCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCC
Confidence 4789999993 2589999999999 5799999998 55 899999999999999999999999999999999643 45
Q ss_pred CCCccceEEEEcccCCCCCCCCCCCccccccCCCCCCCCccEEEEEEecccCCC-CCCCCCCCceEEecCCCcceeeee-
Q 046873 95 STYGHGLVFFLAPVGFQIPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSE-WDPSGVQDHVGINNNSIASAVHTR- 172 (299)
Q Consensus 95 ~~~gDGlAF~l~p~~~~~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~-~Dp~~~~~HVgIdins~~S~~~~~- 172 (299)
..+||||||+|+|.+ ..+.++.|++||+.+..+++...++.||||||||+|.+ +||+. +||||++|++.+..+.+
T Consensus 78 ~~~~dGlAFvi~~~~-~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~--nHIgI~~n~~~s~~~~~~ 154 (236)
T PF00139_consen 78 NNGGDGLAFVIQPDP-NLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDD--NHIGIDVNSVVSNKTASA 154 (236)
T ss_dssp SS-BEEEEEEEEETT-SSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSS--SEEEEEESSSSESEEEE-
T ss_pred ccCCCceEEEEecCc-ccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCC--CEEEEECCCCcccccccc
Confidence 678999999999988 65667799999999876666668899999999999987 89999 99999999999887743
Q ss_pred -----cccccCCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEE
Q 046873 173 -----WNASFHSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILES 247 (299)
Q Consensus 173 -----~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~Ils 247 (299)
...++.+|+.++|||+||+.+++|+|+|+... .+|..+++++.+||+.+++++||||||||||...|.|+|++
T Consensus 155 ~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~--~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~s 232 (236)
T PF00139_consen 155 GYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS--SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILS 232 (236)
T ss_dssp ---EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT--TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEE
T ss_pred cccccccccccCCcEEEEEEEEcCCccEEEEEEeccc--CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEE
Confidence 34578999999999999999999999999874 48889999999999999999999999999999999999999
Q ss_pred EEEE
Q 046873 248 WEFS 251 (299)
Q Consensus 248 WsF~ 251 (299)
|+|+
T Consensus 233 W~F~ 236 (236)
T PF00139_consen 233 WSFS 236 (236)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=7.7e-44 Score=318.56 Aligned_cols=199 Identities=27% Similarity=0.388 Sum_probs=169.1
Q ss_pred CCCeEEecceEee--CCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEccc
Q 046873 31 RKDIIYQGDAVPS--VGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPV 108 (299)
Q Consensus 31 ~~~l~l~GdA~~~--~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~ 108 (299)
..++.++|+|.+. ++.|+||++ ..+++|++||++||++| ++|+|+|+|+|.+.. ..+||||||+|+|.
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~--~~~~~G~~~~~~~i~~~-------~~F~~~F~f~i~~~~-~~~gdG~aF~l~~~ 82 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPD--TGNQAGSAWYKTPIDLS-------KDFTTTFKFYLGTKG-TNGADGIAFVLQND 82 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCC--CCCcEEEEEECCcEecc-------CCEEEEEEEEEeCCC-CCCCCcEEEEEecC
Confidence 3589999999998 789999998 68899999999999998 589999999999753 56899999999997
Q ss_pred CCCCCCCCCC--CccccccCCCCCCCCccEEEEEEecccCCC-CCCCCCCCceEEecCCCcce-------eeeecccccC
Q 046873 109 GFQIPPNADG--GFLGLFNTTTSFSSSNHIVHVEFDTFFNSE-WDPSGVQDHVGINNNSIASA-------VHTRWNASFH 178 (299)
Q Consensus 109 ~~~~p~~~~G--~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~-~Dp~~~~~HVgIdins~~S~-------~~~~~~~~l~ 178 (299)
+.. +.+..| ++||+. ..++.+|||||||+|.+ +||+. +||||++|+..+. ....++....
T Consensus 83 ~~~-~~~~~g~~~~lG~~-------~~~~~~aVefDT~~N~~~~dp~~--~higi~~n~~~~~~~~~~~~~~~~~~~~~~ 152 (223)
T cd01951 83 PAG-ALGGGGGGGGLGYG-------GIGNSVAVEFDTYKNDDNNDPNG--NHISIDVNGNGNNTALATSLGSASLPNGTG 152 (223)
T ss_pred CCC-ccccCCCCCccCcc-------ccCCeEEEEEeccccCCCCCCCC--CEEEEEcCCCCCCcccccccceeeCCCccC
Confidence 733 333444 788873 45789999999999987 79999 9999999998643 2223332333
Q ss_pred CCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEEEEEEe
Q 046873 179 SEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILESWEFSS 252 (299)
Q Consensus 179 ~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~IlsWsF~s 252 (299)
+|+.++|||+|++.+++|+|+|++.. .|..++++..+||+..++++||||||||||...|.|+|++|+|++
T Consensus 153 ~g~~~~v~I~Y~~~~~~L~v~l~~~~---~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 153 LGNEHTVRITYDPTTNTLTVYLDNGS---TLTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred CCCEEEEEEEEeCCCCEEEEEECCCC---ccccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 49999999999999999999998754 256789999999999999999999999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.95 E-value=1.5e-25 Score=200.05 Aligned_cols=186 Identities=22% Similarity=0.255 Sum_probs=137.9
Q ss_pred CCeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCCC
Q 046873 32 KDIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGFQ 111 (299)
Q Consensus 32 ~~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~~ 111 (299)
.+|.+.|+|.+.++.|+||++ .+++.|++||+.|+++ .+|+++|+|+|.+.. ..+||||||+|+|...
T Consensus 20 ~~w~~~G~a~~~~~~i~LT~~--~~~~~G~~~~~~pi~~--------~~F~~~f~F~i~~~~-~~~gdG~af~~~~~~~- 87 (218)
T cd07308 20 GNWTVGGSTVITKNYIRLTPD--VPSQSGSLWSRVPIPA--------KDFEIEVEFSIHGGS-GLGGDGFAFWYTEEPG- 87 (218)
T ss_pred CCeEEcCCeEEeCCEEEeCCC--CCCCEeEEEeCCCccC--------CCEEEEEEEEEeCCC-CCCCCEEEEEEECCCC-
Confidence 589999999999999999998 6789999999999997 479999999998753 5689999999998652
Q ss_pred CCCCCCCCccccccCCCCCCCCccEEEEEEecccCCCCCCCCCCCceEEecCC-Ccceee------e---ecccccCC-C
Q 046873 112 IPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDPSGVQDHVGINNNS-IASAVH------T---RWNASFHS-E 180 (299)
Q Consensus 112 ~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~~HVgIdins-~~S~~~------~---~~~~~l~~-G 180 (299)
..|..+|.. ...+.+||||||+.|. +... .+|.+.+|. ..+... . .+.....+ +
T Consensus 88 ----~~g~~~G~~-------~~~~Glai~fdt~~n~--~~~~--p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~ 152 (218)
T cd07308 88 ----SDGPLFGGP-------DKFKGLAIFFDTYDND--GKGF--PSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSN 152 (218)
T ss_pred ----CCCcccccC-------CCCCEEEEEEEcCCCC--CCCC--CeEEEEEeCCCceecccCCCccccccceeEecccCC
Confidence 244556653 2457899999999985 2222 455555443 222110 0 11112222 6
Q ss_pred CeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEEEEEE
Q 046873 181 DTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILESWEFS 251 (299)
Q Consensus 181 ~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~IlsWsF~ 251 (299)
.+.+++|.|+ .+.|.|.+.... +.....+..++.. .+|+..|+||||+||...+.|+|++|.+.
T Consensus 153 ~~~~~~I~y~--~~~l~v~i~~~~----~~~~~~c~~~~~~-~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 153 APTTLRISYL--NNTLKVDITYSE----GNNWKECFTVEDV-ILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred CCeEEEEEEE--CCEEEEEEeCCC----CCCccEEEEcCCc-ccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 8999999999 579999998642 2234455555432 47889999999999999999999999875
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.89 E-value=3.3e-21 Score=175.02 Aligned_cols=194 Identities=19% Similarity=0.178 Sum_probs=135.4
Q ss_pred CCCeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCC
Q 046873 31 RKDIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGF 110 (299)
Q Consensus 31 ~~~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~ 110 (299)
..+|.+.|+|.+.++.||||++ .+++.|++||+.|+++ .+|+++|+|+|.+.....+|||||||++....
T Consensus 19 i~~w~~~G~a~v~~~~IrLTp~--~~~~~G~~w~~~p~~~--------~~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~ 88 (248)
T cd06901 19 MPLWDFLGSTMVTSQYIRLTPD--HQSKQGSIWNRVPCYL--------RDWEMHVHFKVHGSGKNLFGDGFAIWYTKERM 88 (248)
T ss_pred CCCEEEcceEEEcCCeEEECCC--CCCCEEEEeccCCccC--------CCEEEEEEEEEeCCCCCCCCCEEEEEEEcCCC
Confidence 3589999999999999999998 6678999999999997 47999999999986556789999999998642
Q ss_pred CCCCCCCCCccccccCCCCCCCCccEEEEEEecccCCCC--CCCCCCCceEEecC-CCcceee---------eeccccc-
Q 046873 111 QIPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEW--DPSGVQDHVGINNN-SIASAVH---------TRWNASF- 177 (299)
Q Consensus 111 ~~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~--Dp~~~~~HVgIdin-s~~S~~~---------~~~~~~l- 177 (299)
..|..+|.. ..-..+||.|||+.|.+. .... +-|.+.+| +...... ..+....
T Consensus 89 -----~~G~~fG~~-------~~f~Gl~I~~Dt~~n~~~~~~~~~--P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~r 154 (248)
T cd06901 89 -----QPGPVFGSK-------DNFHGLAIFFDTYSNQNGEHEHVH--PYISAMVNNGSLSYDHDRDGTHTELAGCSAPFR 154 (248)
T ss_pred -----ccCcccccC-------CCCceEEEEEECCCCCCCcccCCC--ceEEEEEcCCCeeecccCCCchhhcCceeeecc
Confidence 334445542 234689999999998631 1122 33444333 2211100 0111122
Q ss_pred CCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEEEEEEeccC
Q 046873 178 HSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILESWEFSSSLD 255 (299)
Q Consensus 178 ~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~IlsWsF~s~~~ 255 (299)
..+...+++|.|... .|+|.++..+. .....+...+ .-.||+..|+||||+||+..+.|+|++-.+..-..
T Consensus 155 n~~~~t~~rI~Y~~~--~l~v~vd~~~~----~~w~~Cf~~~-~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~l~~ 225 (248)
T cd06901 155 NKDHDTFVAIRYSKG--RLTVMTDIDGK----NEWKECFDVT-GVRLPTGYYFGASAATGDLSDNHDIISMKLYELDV 225 (248)
T ss_pred CCCCCeEEEEEEECC--eEEEEEecCCC----CceeeeEEeC-CeecCCCCEEEEEecCCCCCCcEEEEEEEEecCcc
Confidence 234567899999974 68888876432 1222333332 12378889999999999999999999988866543
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.88 E-value=6.1e-21 Score=171.09 Aligned_cols=190 Identities=21% Similarity=0.212 Sum_probs=136.1
Q ss_pred CCeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCCC
Q 046873 32 KDIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGFQ 111 (299)
Q Consensus 32 ~~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~~ 111 (299)
..|.+.|+|.+.++.||||++ .+++.|.+|.+.|++. .+|+.+|+|+|++.. ..+||||||+++....
T Consensus 22 ~~W~~~G~t~~~~~~IrLTp~--~~~~~G~iw~~~~~~~--------~~w~ie~~Fri~g~~-~~~gdG~a~W~t~~~~- 89 (225)
T cd06902 22 PFWSHGGDAIASLEQVRLTPS--LRSKKGSVWTKNPFSF--------ENWEVEVTFRVTGRG-RIGADGLAIWYTKERG- 89 (225)
T ss_pred CceEecccEEecCCEEEECCC--CCCCEEEEeeCCCcCC--------CCEEEEEEEEEecCC-CCCCCEEEEEEECCCC-
Confidence 579999999999999999998 7899999999999983 379999999999753 3578999999998641
Q ss_pred CCCCCCCCccccccCCCCCCCCccEEEEEEecccCCCCCCCCCCCceEEecCCC-cceee---------eecccccC-CC
Q 046873 112 IPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDPSGVQDHVGINNNSI-ASAVH---------TRWNASFH-SE 180 (299)
Q Consensus 112 ~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~~HVgIdins~-~S~~~---------~~~~~~l~-~G 180 (299)
..|+.+|..+ ....+||.|||+.|.+ .... ..|.+..|.- ..... ..+..... ..
T Consensus 90 ----~~G~~~G~~~-------~f~Gl~I~~Dt~~n~~-~~~~--p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~ 155 (225)
T cd06902 90 ----EEGPVFGSSD-------KWNGVGIFFDSFDNDG-KKNN--PAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKP 155 (225)
T ss_pred ----CCCCccCCCC-------cccEEEEEEECCCCCC-CCCC--cEEEEEECCCCeeccccCCCcccccceEEEeccCCC
Confidence 3456666532 3568999999998853 2333 5665555432 11110 01112232 35
Q ss_pred CeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeecccc-ccCceeEEEEEeecCCccccEEEEEEEEEe
Q 046873 181 DTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMK-VLPQWVTIGFSAATGLSGERHILESWEFSS 252 (299)
Q Consensus 181 ~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~-~l~~~v~vGFSAsTG~~~~~h~IlsWsF~s 252 (299)
.+.+++|.|.. +.|+|.++.... .+......+ +++.. .||+..|+||||+||+..+.|+|++|++.+
T Consensus 156 ~p~~~rI~Y~~--~~l~V~~d~~~~-~~~~~~~~C--f~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 156 YPVRAKITYYQ--NVLTVSINNGFT-PNKDDYELC--TRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred CCeEEEEEEEC--CeEEEEEeCCcC-CCCCcccEE--EecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 68899999998 479998875321 111122333 33333 478899999999999999999999999864
No 7
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.80 E-value=2.1e-17 Score=148.71 Aligned_cols=192 Identities=22% Similarity=0.248 Sum_probs=127.0
Q ss_pred CCeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCCC
Q 046873 32 KDIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGFQ 111 (299)
Q Consensus 32 ~~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~~ 111 (299)
..|.+.|+|.+.++.||||++ .+++.|.+|.+.|++. .+|+.+|+|+|.+.....+||||||+++....
T Consensus 22 ~~W~~~G~t~i~~~~IrLTp~--~~~~~G~iws~~~~~~--------~~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~- 90 (229)
T PF03388_consen 22 PNWDIGGSTVITDNFIRLTPD--RQSQSGSIWSRKPIPF--------DNWEIEFTFRISGQEKGLGGDGMAFWYTKDPG- 90 (229)
T ss_dssp TTEEEEET-EEESSEEEEE-S--STTEEEEEEESS-BEE--------SEEEEEEEEEEESS-SSS-S-EEEEEEESSSS-
T ss_pred CCEEECCeEEecCCEEEECCC--cccCEEEEEEcCCCCc--------cCEEEEEEEEEeccccCcCCCeEEEEEEcCcc-
Confidence 489999999999999999999 7899999999999997 37999999999987556689999999997542
Q ss_pred CCCCCCCCccccccCCCCCCCCccEEEEEEecccCCCCCC-CCCCCceEEecCCCc-ceee---------eecccccC-C
Q 046873 112 IPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDP-SGVQDHVGINNNSIA-SAVH---------TRWNASFH-S 179 (299)
Q Consensus 112 ~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp-~~~~~HVgIdins~~-S~~~---------~~~~~~l~-~ 179 (299)
..|..+|.. .....+||-||||.|.+ .+ ......|.+.+|.-. .... ..+..... .
T Consensus 91 ----~~G~~fG~~-------~~f~Gl~i~idt~~N~~-~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~ 158 (229)
T PF03388_consen 91 ----SDGPVFGGP-------DKFDGLGIFIDTYDNDE-GGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRNS 158 (229)
T ss_dssp ----SSCSBTTB--------SS-EEEEEEEEES-TTC-TTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE---BTE
T ss_pred ----ccccccCCC-------cccceEEEEEEcccCCC-cccccccceEEEEecCCCccccccccCcccccccceeccCcC
Confidence 255666653 23568999999999863 12 111155665555321 1100 11222333 3
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEEEEE
Q 046873 180 EDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILESWEF 250 (299)
Q Consensus 180 G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~IlsWsF 250 (299)
+.+.+++|.|... .|+|.++..-. ........|..++ .-.||+..|+||||+||...+.|+|++-..
T Consensus 159 ~~p~~~ri~Y~~~--~l~v~id~~~~-~~~~~~~~Cf~~~-~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 159 DVPTRIRISYSKN--TLTVSIDSNYL-KNQDDWELCFTTD-GVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp SSEEEEEEEEETT--EEEEEEETSCC-SECCTTEEEEEES-TEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred CCCEEEEEEEECC--eEEEEEecccc-cCCcCCcEEEEcC-CeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 5678999999984 68888873200 0112334444432 123688899999999999999999998654
No 8
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.78 E-value=5.5e-17 Score=144.50 Aligned_cols=181 Identities=17% Similarity=0.118 Sum_probs=126.3
Q ss_pred CCeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCCC
Q 046873 32 KDIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGFQ 111 (299)
Q Consensus 32 ~~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~~ 111 (299)
.+|.+.|+|.+.++.||||++ +++.|.+|-+.|+++.+ +|+.+|+|+|++.. ..+||||||+++..+..
T Consensus 21 ~~W~~~G~t~v~~~~IrLTp~---~s~~G~iWs~~pl~~~~-------~w~ie~~Fri~G~~-~~~gdGla~W~t~~~~~ 89 (215)
T cd06903 21 PNWQTSGNPKLESGRIILTPP---GNQRGSLWLKKPLSLKD-------EWTIEWTFRSTGPE-GRSGGGLNFWLVKDGNA 89 (215)
T ss_pred CCeEEcCcEEeeCCeEEECCC---CCceEeEeeCCcCCCCC-------CEEEEEEEEecccC-CcCCCEEEEEEECCCcc
Confidence 589999999999999999997 68899999999998652 69999999998753 36899999999976521
Q ss_pred CCCCCCC-CccccccCCCCCCCCccEEEEEEecccCCCCCCCCCCCceEEecC-CCcceee--------eecccc-cCCC
Q 046873 112 IPPNADG-GFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDPSGVQDHVGINNN-SIASAVH--------TRWNAS-FHSE 180 (299)
Q Consensus 112 ~p~~~~G-~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~~HVgIdin-s~~S~~~--------~~~~~~-l~~G 180 (299)
..| ..+|-. .....+||.|||+.|. .| .|.+..| +...... ..+... .+.+
T Consensus 90 ----~~g~~~fG~~-------~~f~Gl~I~~Dt~~n~--~p-----~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~~ 151 (215)
T cd06903 90 ----DVGTSSIYGP-------SKFDGLQLLIDNNGGS--GG-----SLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDSG 151 (215)
T ss_pred ----cCCccccCCC-------CCCcEEEEEEECCCCC--Cc-----eEEEEECCCCeeccccCCcccccceeeEeccCCC
Confidence 112 233321 2345789999999873 12 2333322 2221110 111112 3456
Q ss_pred CeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccC-ceeEEEEEeecCCccccEEEEEEEEEe
Q 046873 181 DTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLP-QWVTIGFSAATGLSGERHILESWEFSS 252 (299)
Q Consensus 181 ~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~-~~v~vGFSAsTG~~~~~h~IlsWsF~s 252 (299)
.+.+++|.|....+.|+|.++. + .|..++ .-.|| ...|+||||+||+..+.|+|++..+..
T Consensus 152 ~p~~iri~Y~~~~~~l~v~vd~--------~--~Cf~~~-~v~lP~~~y~fGiSAaTg~~~d~hdIl~~~~~~ 213 (215)
T cd06903 152 VPSTIRLSYDALNSLFKVQVDN--------R--LCFQTD-KVQLPQGGYRFGITAANADNPESFEILKLKVWN 213 (215)
T ss_pred CCEEEEEEEECCCCEEEEEECC--------C--EEEecC-CeecCCCCCEEEEEEcCCCCCCcEEEEEEEEec
Confidence 7899999999977789888753 1 222222 11256 567899999999999999999987643
No 9
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.9e-15 Score=138.96 Aligned_cols=190 Identities=22% Similarity=0.221 Sum_probs=134.6
Q ss_pred CCCeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCC
Q 046873 31 RKDIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGF 110 (299)
Q Consensus 31 ~~~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~ 110 (299)
..+|.+.|.+.++.+.||||++ .+++.|++|-..|+... +|+..+.|+++.+.....|||||++++-+..
T Consensus 71 ~~~W~~~Gstvv~~~~irLT~d--~qsk~GAv~n~~Pv~s~--------~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~ 140 (351)
T KOG3839|consen 71 QPNWNLSGSTVVTSNYIRLTPD--EQSKSGAVWNRQPVFSR--------DWEVLVHFKVHGQSKNLFGDGMAIWYTKERA 140 (351)
T ss_pred ccCccccccEEEEeeeeecccc--ccccccccccCCCcccc--------ceeEEEEEEEecCCCcccccceEEEeecccc
Confidence 3589999999999999999999 88999999999999854 6999999999998888899999999998763
Q ss_pred CCCCCCCCCccccccCCCCCCCCccEEEEEEecccCCCCCCCCCCCceEEecCC-Ccce------eeee---cccccCCC
Q 046873 111 QIPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDPSGVQDHVGINNNS-IASA------VHTR---WNASFHSE 180 (299)
Q Consensus 111 ~~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~~HVgIdins-~~S~------~~~~---~~~~l~~G 180 (299)
+ .|..+|-.. ..+.+||-.|||-|.+.-+.....-+.+.+|. -.|. ..+. +....++.
T Consensus 141 q-----~GPvFG~~d-------kF~GL~vfidtY~n~~g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~ 208 (351)
T KOG3839|consen 141 Q-----PGPVFGSKD-------KFTGLAVFIDTYGNHNGPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNL 208 (351)
T ss_pred c-----CCCCCCCcc-------cceeEEEEEeccCCcCCCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccC
Confidence 2 456667543 24579999999988631121111233333321 1111 0111 11223332
Q ss_pred C-eeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccc-cCceeEEEEEeecCCccccEEEEEEEE
Q 046873 181 D-TADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKV-LPQWVTIGFSAATGLSGERHILESWEF 250 (299)
Q Consensus 181 ~-~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~-l~~~v~vGFSAsTG~~~~~h~IlsWsF 250 (299)
. ...+.|.|+. ++|++..+..+ |..... ..++..+ +|.--|+|+||+||..++.|+|++-.+
T Consensus 209 ~~dt~~~iry~~--~~l~~~~dl~~----~~~~~~--c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 209 PHDTLVVIRYEK--KTLSISIDLEG----PNEWID--CFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred CCcceeEEEecC--CceEEEEecCC----Cceeee--eeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 1 3468899999 67888777653 233333 3445454 788999999999999999999998755
No 10
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1e-12 Score=123.00 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=133.0
Q ss_pred CeEEecceEeeCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCCCC
Q 046873 33 DIIYQGDAVPSVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGFQI 112 (299)
Q Consensus 33 ~l~l~GdA~~~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~~~ 112 (299)
=|...|||..+...|||+|. ..++.|.+|-+..+++- .|..+..|++++. +..+|||||++.+...
T Consensus 55 FW~~~GdAIas~eqvRlaPS--mrsrkGavWtka~~~fe--------~weVev~~rVtGr-GRiGAdGlaiWYt~~~--- 120 (497)
T KOG3838|consen 55 FWSHHGDAIASSEQVRLAPS--MRSRKGAVWTKASVPFE--------NWEVEVQFRVTGR-GRIGADGLAIWYTRGR--- 120 (497)
T ss_pred eeeecCcccccccceeeccc--cccccCceeecccCCcc--------cceEEEEEEeccc-ccccCCceEEEEecCC---
Confidence 38889999999999999998 88999999999888764 5999999999986 5679999999998743
Q ss_pred CCCCCCCccccccCCCCCCCCccEEEEEEecccCCCCCCCCCCCceEEecCCCc-ce-eee--------ecccccCC-CC
Q 046873 113 PPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDPSGVQDHVGINNNSIA-SA-VHT--------RWNASFHS-ED 181 (299)
Q Consensus 113 p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~~HVgIdins~~-S~-~~~--------~~~~~l~~-G~ 181 (299)
|--|..+|-. ..=..++|-||.+.|+ +-.++ ..|.+-.|.-. +. ... ++-.++.| --
T Consensus 121 --G~~GpVfGg~-------d~WnGigiffDSfdnD-~qknn--P~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPy 188 (497)
T KOG3838|consen 121 --GHVGPVFGGL-------DSWNGIGIFFDSFDND-GQKNN--PAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPY 188 (497)
T ss_pred --Cccccccccc-------ccccceEEEeeccccc-CCcCC--ccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCC
Confidence 2334344421 1224679999999886 33344 56777665422 11 110 01123443 34
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEeecCCccccEEEEEEEE
Q 046873 182 TADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSAATGLSGERHILESWEF 250 (299)
Q Consensus 182 ~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSAsTG~~~~~h~IlsWsF 250 (299)
+..++|+|-. ++|+|.+.. ++.+. ..+-++..++ .-.||..-|+|.||+||++.+-|+|+++..
T Consensus 189 PvRarItY~~--nvLtv~inn-Gmtp~-d~yE~C~rve-~~~lp~nGyFGvSAATGgLADDHDVl~Flt 252 (497)
T KOG3838|consen 189 PVRARITYYG--NVLTVMINN-GMTPS-DDYEFCVRVE-NLLLPPNGYFGVSAATGGLADDHDVLSFLT 252 (497)
T ss_pred CceEEEEEec--cEEEEEEcC-CCCCC-CCcceeEecc-ceeccCCCeeeeeecccccccccceeeeEE
Confidence 7789999997 699999976 33112 3445555543 124789999999999999999999999854
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.21 E-value=1.8e-09 Score=96.36 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=118.4
Q ss_pred eCCeEEecCCCCccccEEEEEeCCCeeccCCCCCCceeeEEEEEEEEeecCCCCCccceEEEEcccCCCCC-CCCCCCcc
Q 046873 43 SVGAIELIKNYQYLCRVGWATYADRVPLWNSDTGELADFSTKFSFQINTLDRSTYGHGLVFFLAPVGFQIP-PNADGGFL 121 (299)
Q Consensus 43 ~~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~~~asFst~F~F~I~~~~~~~~gDGlAF~l~p~~~~~p-~~~~G~~L 121 (299)
.++.||||++ ..+|+|.+.|.++++--+ .-...+|.+..... ...+||||||||+-.. ..| .+..||.|
T Consensus 30 ~~g~LRLT~~--~~nqata~~~~~~FPs~~------n~v~veFd~yayg~-~g~GADGia~vLsDas-v~p~~G~fGGsL 99 (255)
T cd06900 30 VNNRLRLTDA--SGNQATAVTLQRLFPSAG------NYVEVEFDYYAYGS-GGNGADGVALVLSDAS-VTPQAGAFGGSL 99 (255)
T ss_pred ccCeEEeccC--ccCcceeEEEeeeeccCC------CeEEEEEEEEEecC-CCCCCceEEEEEeCCC-cCCcCCCcCccc
Confidence 4689999998 889999999999998432 13788888877764 5678999999998533 223 47889999
Q ss_pred ccccCC-CCCCCCccEEEEEEecccCCC--CC-----CCCCCCceEEecCCCcceeeee------cc--cccCC----CC
Q 046873 122 GLFNTT-TSFSSSNHIVHVEFDTFFNSE--WD-----PSGVQDHVGINNNSIASAVHTR------WN--ASFHS----ED 181 (299)
Q Consensus 122 Gl~~~~-~~~~~~~~~vAVEFDT~~n~~--~D-----p~~~~~HVgIdins~~S~~~~~------~~--~~l~~----G~ 181 (299)
||.-.+ ...+.....++|-||-|-|.. .+ |.-.-+-|+|.-.+..-..+.. .+ ++..+ ..
T Consensus 100 GYa~~~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~vRGsg~g~~gY~yl~gt~~~~~~id~~~~~~~~~ 179 (255)
T cd06900 100 GYAQRNDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTVRGSGSGYTGYKYITGTGVLPPGIDNNSTSTPAP 179 (255)
T ss_pred ccccccCCCCccccceEEEEEeccccccCCCCCccCCcccccceEEEECCCCCCcCceEecccCCCCcccccCCCCCCCC
Confidence 998654 233456678999999987742 11 1111133444321110011111 11 11111 12
Q ss_pred eeEEEEEEeCCC---CeEEEEEeecCCCCCCCcceEEEee---ccc--cccCceeEEEEEeecCCccccEEEEEEEE
Q 046873 182 TADVRIAYNSTT---KNLSVSWTYRQTSDPRENTSLFYII---DLM--KVLPQWVTIGFSAATGLSGERHILESWEF 250 (299)
Q Consensus 182 ~~~v~I~Yd~~~---~~L~V~l~~~~~~~~~~~~~ls~~v---dL~--~~l~~~v~vGFSAsTG~~~~~h~IlsWsF 250 (299)
.|.-+|+-|+.. ..|+|.-+..+.. . -.+++ ..+ +.. .-+|+..+++|++|||.....|+|-..+.
T Consensus 180 ~hrY~i~Ids~~~~~~~vsV~R~~~~gg-~-~~~~I-~~~d~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 180 GHRYRITIDSTNGDNAWLSVERDIGNGG-A-YFVVI-LTFDALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred ceEEEEEEecCCCCceEEEEEEEccCCc-e-eEEee-cceeeccccCCCCCCccEEEEEEecCCCcccceeecceEe
Confidence 355555555542 2345554432110 0 11122 122 222 45789999999999999999999976653
No 12
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.69 E-value=0.018 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=16.2
Q ss_pred eeEEEEeeehHHHHHHHHHHheeeeEEeee
Q 046873 266 KIRIIVSVTVSIGVLVAGMITGLLILRRHK 295 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~ 295 (299)
...+.+|+.+..+++++++++++++.|||+
T Consensus 10 ~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred eEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 445666666665555554544445445554
No 13
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=95.29 E-value=0.018 Score=55.12 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=45.3
Q ss_pred ceeEEEEEeecCCccccEEEEEEEEEeccCCcCCCCCCCce--eEEEEeeehHHHHHHHHHHheeeeEEeeeccc
Q 046873 226 QWVTIGFSAATGLSGERHILESWEFSSSLDMKQRNGTDGKK--IRIIVSVTVSIGVLVAGMITGLLILRRHKKKE 298 (299)
Q Consensus 226 ~~v~vGFSAsTG~~~~~h~IlsWsF~s~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~~~ 298 (299)
..+.|=|..+++..+..+..++|++..-.-.+. .+.-. ...++++++|+.+++++++.+++|++|+|+||
T Consensus 279 ~~~nvSFG~~gDgfY~~t~ylsWt~~~G~G~PP---~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~~~ 350 (350)
T PF15065_consen 279 QGLNVSFGTSGDGFYWATNYLSWTFLIGYGSPP---VDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRKRK 350 (350)
T ss_pred EEEEEEeccCCCCcccccceEEEEEecccCCCC---ccchhHHHHHHHHHHhhHHHHHHHHhhheEEEeccccCC
Confidence 347888888999999999999999988743331 11111 12223455555666666677777776666654
No 14
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=91.79 E-value=0.26 Score=41.52 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=11.1
Q ss_pred eEEEEeeehHH--HHHHHHHHhee
Q 046873 267 IRIIVSVTVSI--GVLVAGMITGL 288 (299)
Q Consensus 267 ~~~~~~~~v~~--~~~~~~~~~~~ 288 (299)
+.++||++||. +++++++++++
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhhe
Confidence 35777766663 33433343443
No 15
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=90.90 E-value=1.6 Score=47.10 Aligned_cols=152 Identities=20% Similarity=0.165 Sum_probs=87.6
Q ss_pred CCCeEEecceEee---CCeEEecCCCCccccEEEEEeCCCeeccCCCCC-----CceeeEEEEEEEEeecCCCCCccceE
Q 046873 31 RKDIIYQGDAVPS---VGAIELIKNYQYLCRVGWATYADRVPLWNSDTG-----ELADFSTKFSFQINTLDRSTYGHGLV 102 (299)
Q Consensus 31 ~~~l~l~GdA~~~---~g~l~LT~~~~~~~~~Gr~~y~~Pi~l~~~~t~-----~~asFst~F~F~I~~~~~~~~gDGlA 102 (299)
.+.|.|+|..++. ++.++|..- ....-+|++-..|+.++.+.+- --+.|+.+|-|+... ...|||
T Consensus 803 l~~LvFNG~~Yld~~K~~~~~ls~l--~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt----~sp~gl- 875 (1591)
T KOG3514|consen 803 LSGLVFNGQDYLDKCKMGDIQLSEL--SARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKT----TSPDGL- 875 (1591)
T ss_pred hhheEECcHHHHHHHhcCCcchhhc--chhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEee----cCCCeE-
Confidence 3579999999885 478888764 3445688899999988765432 346788888777754 246664
Q ss_pred EEEcccCCCCCCCCCCCccccccCCCCCCCCccEEEEEEecccCCCCCCCCCCCceEEecCCC-cceeeeecccccCCCC
Q 046873 103 FFLAPVGFQIPPNADGGFLGLFNTTTSFSSSNHIVHVEFDTFFNSEWDPSGVQDHVGINNNSI-ASAVHTRWNASFHSED 181 (299)
Q Consensus 103 F~l~p~~~~~p~~~~G~~LGl~~~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~~HVgIdins~-~S~~~~~~~~~l~~G~ 181 (299)
++.+.+ .-|+++|||.=--+ -|--.|..+- .+.. .+-...++|.+
T Consensus 876 -l~fn~g----------------------d~ndfi~velvnG~----------ihYtfdlg~gp~~~k-~~sr~hlnDnr 921 (1591)
T KOG3514|consen 876 -LLFNSG----------------------DGNDFIAVELVNGY----------IHYTFDLGNGPTSMK-GPSRQHLNDNR 921 (1591)
T ss_pred -EEecCC----------------------CCCceEEEEEeCcE----------EEEEEEcCCCccccc-CcccCcCcccc
Confidence 333221 12578898853211 1222222110 0000 01123478899
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEE
Q 046873 182 TADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIG 231 (299)
Q Consensus 182 ~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vG 231 (299)
+|+|-|.=|. ++.-++.++. +....++...++|. |...+|+|
T Consensus 922 WHnV~I~rd~-~~~HtL~vD~-----s~~t~~~~g~~~l~--l~g~LyiG 963 (1591)
T KOG3514|consen 922 WHNVLIYRDK-TNTHTLKVDN-----SSTTQIIDGAVNLD--LKGKLYIG 963 (1591)
T ss_pred ceeEEEEcCC-CCceEEEecC-----ceEEEEecCccccc--cccceecc
Confidence 9999998884 4555556553 22334444433332 45567777
No 16
>PF15102 TMEM154: TMEM154 protein family
Probab=86.82 E-value=0.7 Score=38.68 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.8
Q ss_pred Eeeecc
Q 046873 292 RRHKKK 297 (299)
Q Consensus 292 ~~r~~~ 297 (299)
+||||.
T Consensus 82 ~kRkr~ 87 (146)
T PF15102_consen 82 YKRKRT 87 (146)
T ss_pred Eeeccc
Confidence 455443
No 17
>smart00282 LamG Laminin G domain.
Probab=85.80 E-value=16 Score=29.04 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=21.1
Q ss_pred cccCCCCeeEEEEEEeCCCCeEEEEEee
Q 046873 175 ASFHSEDTADVRIAYNSTTKNLSVSWTY 202 (299)
Q Consensus 175 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 202 (299)
..+.+|++|++.|.++. +.+++.++.
T Consensus 57 ~~~~dg~WH~v~i~~~~--~~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNG--RRVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeC--CEEEEEECC
Confidence 46889999999999996 467777764
No 18
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=82.93 E-value=0.94 Score=39.45 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=13.4
Q ss_pred EEEEeeehHHHHHHHHHHheeeeEEeeecc
Q 046873 268 RIIVSVTVSIGVLVAGMITGLLILRRHKKK 297 (299)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~~~~~~~~r~~~ 297 (299)
.++|+|.+.. +++++++.++++|.||+|
T Consensus 159 ~laI~lPvvv--~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 159 ALAIALPVVV--VVLALIMYGFFFWNRKKR 186 (189)
T ss_pred eEEEEccHHH--HHHHHHHHhhheeeccce
Confidence 5555555543 333344445555544444
No 19
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=82.70 E-value=1 Score=35.11 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=16.4
Q ss_pred eeEEEEeeehHHHHHHHH--HHheeeeEEeee
Q 046873 266 KIRIIVSVTVSIGVLVAG--MITGLLILRRHK 295 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~~r~ 295 (299)
..+.++|++|++++++.+ ..++|+|++|||
T Consensus 64 s~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred ccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 456677777776654432 234455555543
No 20
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=80.92 E-value=27 Score=27.94 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.2
Q ss_pred ccCCCCeeEEEEEEeCCCCeEEEEEee
Q 046873 176 SFHSEDTADVRIAYNSTTKNLSVSWTY 202 (299)
Q Consensus 176 ~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 202 (299)
.+.+|++|++.|.++. +.++++++.
T Consensus 76 ~v~dg~Wh~v~i~~~~--~~~~l~VD~ 100 (151)
T cd00110 76 PLNDGQWHSVSVERNG--RSVTLSVDG 100 (151)
T ss_pred ccCCCCEEEEEEEECC--CEEEEEECC
Confidence 4889999999999998 577777765
No 21
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=80.70 E-value=0.51 Score=44.07 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred EeeehHHHHHHHHHHheeeeEEeeeccc
Q 046873 271 VSVTVSIGVLVAGMITGLLILRRHKKKE 298 (299)
Q Consensus 271 ~~~~v~~~~~~~~~~~~~~~~~~r~~~~ 298 (299)
.++.|++++|+ +++++++|++|||++|
T Consensus 151 paVVI~~iLLI-A~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 151 PAVVIAAILLI-AGIIACICYRRKRKGK 177 (290)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHH-HHHHHHHhhhhhhccc
Confidence 34444443333 2334455555555543
No 22
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=79.62 E-value=1 Score=46.12 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCceeEEEEeeehHHHHHHHHHHheeeeEEeeecc
Q 046873 263 DGKKIRIIVSVTVSIGVLVAGMITGLLILRRHKKK 297 (299)
Q Consensus 263 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~~ 297 (299)
.....+||+|+.+..++++++++++++++||++|-
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~ 299 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKL 299 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence 34567888998777777666666777777887764
No 23
>PHA03265 envelope glycoprotein D; Provisional
Probab=79.47 E-value=0.72 Score=43.84 Aligned_cols=29 Identities=31% Similarity=0.206 Sum_probs=19.6
Q ss_pred ceeEEEEeeehHHHHHHHHHHheeeeEEeeec
Q 046873 265 KKIRIIVSVTVSIGVLVAGMITGLLILRRHKK 296 (299)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
..++++||+.|++.+++ +++.+++|||||
T Consensus 348 ~~~g~~ig~~i~glv~v---g~il~~~~rr~k 376 (402)
T PHA03265 348 TFVGISVGLGIAGLVLV---GVILYVCLRRKK 376 (402)
T ss_pred cccceEEccchhhhhhh---hHHHHHHhhhhh
Confidence 35688899888876665 344555577766
No 24
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=78.10 E-value=0.69 Score=37.68 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=1.2
Q ss_pred eeEEEEeeehHHHHHHHHHHheeeeEEeeecccC
Q 046873 266 KIRIIVSVTVSIGVLVAGMITGLLILRRHKKKER 299 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~~~~ 299 (299)
+..+.++.++.++++++++ +..+++|||+||||
T Consensus 76 ~l~~pi~~sal~v~lVl~l-lsg~lv~rrcrrr~ 108 (129)
T PF12191_consen 76 PLLWPILGSALSVVLVLAL-LSGFLVWRRCRRRE 108 (129)
T ss_dssp SSS-------------------------------
T ss_pred ceehhhhhhHHHHHHHHHH-HHHHHHHhhhhccc
Confidence 3344454444444444333 33455566666554
No 25
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=76.95 E-value=15 Score=34.16 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=12.5
Q ss_pred EEEEEEeecC-CCCCccceEEEEcccC
Q 046873 84 KFSFQINTLD-RSTYGHGLVFFLAPVG 109 (299)
Q Consensus 84 ~F~F~I~~~~-~~~~gDGlAF~l~p~~ 109 (299)
...|.|.+.- ......-++++.+.-+
T Consensus 66 ~~eF~IP~gv~~~P~v~Rl~lVyqnlG 92 (278)
T PF06697_consen 66 FSEFHIPPGVVVQPYVERLVLVYQNLG 92 (278)
T ss_pred cceeecCCcceecCcceEEEEEEeccC
Confidence 3456665421 1223455666666543
No 26
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=76.14 E-value=0.84 Score=32.81 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=0.4
Q ss_pred heeeeEEeeec
Q 046873 286 TGLLILRRHKK 296 (299)
Q Consensus 286 ~~~~~~~~r~~ 296 (299)
++.++++|-||
T Consensus 28 LIlf~iyR~rk 38 (64)
T PF01034_consen 28 LILFLIYRMRK 38 (64)
T ss_dssp ---------S-
T ss_pred HHHHHHHHHHh
Confidence 44455555333
No 27
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=72.89 E-value=2.5 Score=41.33 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=20.5
Q ss_pred CceeEEEEeeehHHHHHHHHH--HheeeeEEeee
Q 046873 264 GKKIRIIVSVTVSIGVLVAGM--ITGLLILRRHK 295 (299)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~r~ 295 (299)
+.+.+.|+|++|++++||.++ .|.||||.|+|
T Consensus 363 ~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred cccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 346789999999887776543 23345555543
No 28
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=65.68 E-value=2.7 Score=39.39 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=18.1
Q ss_pred EEEEeeehHHHHH-HHHHHheeeeEEeeecc
Q 046873 268 RIIVSVTVSIGVL-VAGMITGLLILRRHKKK 297 (299)
Q Consensus 268 ~~~~~~~v~~~~~-~~~~~~~~~~~~~r~~~ 297 (299)
..+|+++||++++ +++++++++++.|||++
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 5677777765543 33345666777666654
No 29
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=64.28 E-value=0.86 Score=33.86 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=2.5
Q ss_pred eeEEeeec
Q 046873 289 LILRRHKK 296 (299)
Q Consensus 289 ~~~~~r~~ 296 (299)
++++||++
T Consensus 21 ~~~~rr~~ 28 (75)
T PF14575_consen 21 IVCFRRCK 28 (75)
T ss_dssp HCCCTT--
T ss_pred EEEEeeEc
Confidence 33344433
No 30
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=59.42 E-value=3 Score=41.27 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=4.2
Q ss_pred cceEEEEcccC
Q 046873 99 HGLVFFLAPVG 109 (299)
Q Consensus 99 DGlAF~l~p~~ 109 (299)
.|-.|.+.+..
T Consensus 145 ~~~~~~~~~~~ 155 (439)
T PF02480_consen 145 HGATFHLKNYH 155 (439)
T ss_dssp -SEEEEEE--S
T ss_pred cccEEEEeccc
Confidence 45555555443
No 31
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.50 E-value=0.78 Score=37.40 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=5.8
Q ss_pred HheeeeEEeeecc
Q 046873 285 ITGLLILRRHKKK 297 (299)
Q Consensus 285 ~~~~~~~~~r~~~ 297 (299)
++++||++||||+
T Consensus 82 lli~y~irR~~Kk 94 (122)
T PF01102_consen 82 LLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHS--
T ss_pred HHHHHHHHHHhcc
Confidence 3445665555554
No 32
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=55.05 E-value=6.6 Score=30.79 Aligned_cols=11 Identities=9% Similarity=0.316 Sum_probs=4.6
Q ss_pred heeeeEEeeec
Q 046873 286 TGLLILRRHKK 296 (299)
Q Consensus 286 ~~~~~~~~r~~ 296 (299)
+..|++.|.|+
T Consensus 81 IyYFVILRer~ 91 (101)
T PF06024_consen 81 IYYFVILRERQ 91 (101)
T ss_pred heEEEEEeccc
Confidence 33444444433
No 33
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=54.60 E-value=11 Score=32.29 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=10.3
Q ss_pred eeEEEEeeehHHHHHHHHH
Q 046873 266 KIRIIVSVTVSIGVLVAGM 284 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~ 284 (299)
+..|++++.++++++++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~I 95 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLI 95 (179)
T ss_pred eeeeeeehhhHHHHHHHhH
Confidence 4556667766555444333
No 34
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=54.30 E-value=7.2 Score=34.56 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=14.8
Q ss_pred EEEeeehHH-HHHHHHHHheeeeEEeeec
Q 046873 269 IIVSVTVSI-GVLVAGMITGLLILRRHKK 296 (299)
Q Consensus 269 ~~~~~~v~~-~~~~~~~~~~~~~~~~r~~ 296 (299)
++|++++.+ ++++++++.+.+|+|.||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 555554444 4555555555566665554
No 35
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=46.40 E-value=3.6 Score=33.06 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=17.8
Q ss_pred eEEEEeeehHHHHHHHHHHheeeeE
Q 046873 267 IRIIVSVTVSIGVLVAGMITGLLIL 291 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~ 291 (299)
...++++.|++.+.+++++|....|
T Consensus 82 ~d~aLp~VIGGLcaL~LaamGA~~L 106 (126)
T PF03229_consen 82 VDFALPLVIGGLCALTLAAMGAGAL 106 (126)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHH
Confidence 4577888888887777766665444
No 36
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=44.62 E-value=8.9 Score=35.70 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=12.8
Q ss_pred eEEEEeeehHH--HHHHHHHHheeeeEEee
Q 046873 267 IRIIVSVTVSI--GVLVAGMITGLLILRRH 294 (299)
Q Consensus 267 ~~~~~~~~v~~--~~~~~~~~~~~~~~~~r 294 (299)
..+.|+++|+. ++|++++++++.+++||
T Consensus 228 ~VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444554443 33444455555444444
No 37
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=42.71 E-value=59 Score=28.43 Aligned_cols=29 Identities=3% Similarity=-0.072 Sum_probs=25.7
Q ss_pred cccCCCCeeEEEEEEeCCCCeEEEEEeec
Q 046873 175 ASFHSEDTADVRIAYNSTTKNLSVSWTYR 203 (299)
Q Consensus 175 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~ 203 (299)
..+.+|++|++-++||+.+.+++++++..
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG~ 113 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDGK 113 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECCE
Confidence 45789999999999999999999999754
No 38
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=38.55 E-value=10 Score=35.07 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred eEEEEeeehHHHHHHHHHHheeeeE
Q 046873 267 IRIIVSVTVSIGVLVAGMITGLLIL 291 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~ 291 (299)
-+++.-|.|..+++|++++...+|+
T Consensus 224 p~~vf~lLVPSiILVLLaVGGLLfY 248 (285)
T PF05337_consen 224 PGFVFYLLVPSIILVLLAVGGLLFY 248 (285)
T ss_dssp -------------------------
T ss_pred Ccccccccccchhhhhhhccceeee
Confidence 3577777788777766554444443
No 39
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=37.95 E-value=1.4e+02 Score=23.03 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=31.9
Q ss_pred cCCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCcceEEEeeccccccCceeEEEEEe
Q 046873 177 FHSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLMKVLPQWVTIGFSA 234 (299)
Q Consensus 177 l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~~~ls~~vdL~~~l~~~v~vGFSA 234 (299)
++..+....||.++. .+++|..+.. ..|+++.. |-. -..--|||||+
T Consensus 49 ls~~e~~~fwI~~~~--G~I~vg~~g~------~~pfl~~~-Dp~--~~~v~yvGft~ 95 (102)
T PF12248_consen 49 LSPSEFRMFWISWRD--GTIRVGRGGE------DEPFLEWT-DPE--PIPVNYVGFTG 95 (102)
T ss_pred CCCCccEEEEEEECC--CEEEEEECCC------ccEEEEEE-CCC--CCcccEEEEec
Confidence 577888999999776 4677766531 35788876 222 23467999953
No 40
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=36.21 E-value=9.4 Score=25.64 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=4.0
Q ss_pred heeeeEEeee
Q 046873 286 TGLLILRRHK 295 (299)
Q Consensus 286 ~~~~~~~~r~ 295 (299)
++++.+++|+
T Consensus 25 i~~w~~~~~~ 34 (49)
T PF05545_consen 25 IVIWAYRPRN 34 (49)
T ss_pred HHHHHHcccc
Confidence 3334434443
No 41
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=34.38 E-value=11 Score=36.70 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=16.9
Q ss_pred eeEEEEeeehHHHHHHHHHHheeeeEEeeec
Q 046873 266 KIRIIVSVTVSIGVLVAGMITGLLILRRHKK 296 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
...+++.|.|.+++|++..+++++++ ||||
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v-~rrr 414 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMV-KRRR 414 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheee-eecc
Confidence 34566677777777764443444444 4443
No 42
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=34.18 E-value=13 Score=31.63 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEEeeehHHHHHHHHHHheeeeEEeeecc
Q 046873 269 IIVSVTVSIGVLVAGMITGLLILRRHKKK 297 (299)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~~~~~~~~r~~~ 297 (299)
-++|+.|+.++-+.+++.+.+++.||+++
T Consensus 130 tLVGIIVGVLlaIG~igGIIivvvRKmSG 158 (162)
T PF05808_consen 130 TLVGIIVGVLLAIGFIGGIIIVVVRKMSG 158 (162)
T ss_dssp -----------------------------
T ss_pred eeeeehhhHHHHHHHHhheeeEEeehhcc
Confidence 33444444333232233333343455543
No 43
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=33.60 E-value=12 Score=26.88 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=0.7
Q ss_pred eEEEEeeehHHHHHHHHHHheeeeEEeee
Q 046873 267 IRIIVSVTVSIGVLVAGMITGLLILRRHK 295 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~~~r~ 295 (299)
..+++|..++++++++++.++++-++||-
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp -------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666666666666666667777667763
No 44
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.21 E-value=9.8 Score=35.40 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=9.7
Q ss_pred ehHHHHHHHH-HHheeeeEEeeecc
Q 046873 274 TVSIGVLVAG-MITGLLILRRHKKK 297 (299)
Q Consensus 274 ~v~~~~~~~~-~~~~~~~~~~r~~~ 297 (299)
.+++.||+++ ++++.+++|-+|||
T Consensus 262 giaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444333 23333444543333
No 45
>PTZ00370 STEVOR; Provisional
Probab=31.26 E-value=10 Score=35.29 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=9.4
Q ss_pred ehHHHHHHHH-HHheeeeEEeeecc
Q 046873 274 TVSIGVLVAG-MITGLLILRRHKKK 297 (299)
Q Consensus 274 ~v~~~~~~~~-~~~~~~~~~~r~~~ 297 (299)
.+++.||+++ ++++.+++|-+|||
T Consensus 258 giaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344443333 23333444543333
No 46
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=29.90 E-value=16 Score=29.28 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=1.4
Q ss_pred EEeeehHHHHHHHHHHheeeeEEeeec
Q 046873 270 IVSVTVSIGVLVAGMITGLLILRRHKK 296 (299)
Q Consensus 270 ~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
++|+.+-.++|.+++.+.||+ +|||.
T Consensus 26 AaGIGiL~VILgiLLliGCWY-ckRRS 51 (118)
T PF14991_consen 26 AAGIGILIVILGILLLIGCWY-CKRRS 51 (118)
T ss_dssp --SSS----------------------
T ss_pred hccceeHHHHHHHHHHHhhee-eeecc
Confidence 344444334443334344444 45544
No 47
>PF15102 TMEM154: TMEM154 protein family
Probab=29.82 E-value=24 Score=29.59 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=13.9
Q ss_pred EEEEeeehHHHHHHHHHHheeeeEEeeecccC
Q 046873 268 RIIVSVTVSIGVLVAGMITGLLILRRHKKKER 299 (299)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~~~~~~~~r~~~~~ 299 (299)
.+++-+.|..+++++++ ++++|+..+.||+|
T Consensus 56 efiLmIlIP~VLLvlLL-l~vV~lv~~~kRkr 86 (146)
T PF15102_consen 56 EFILMILIPLVLLVLLL-LSVVCLVIYYKRKR 86 (146)
T ss_pred ceEEEEeHHHHHHHHHH-HHHHHheeEEeecc
Confidence 33444444433333222 22344457777765
No 48
>PLN03150 hypothetical protein; Provisional
Probab=28.78 E-value=36 Score=35.21 Aligned_cols=29 Identities=3% Similarity=0.142 Sum_probs=13.6
Q ss_pred EEEEeeehHHHHHHHHHHheeeeEEeeec
Q 046873 268 RIIVSVTVSIGVLVAGMITGLLILRRHKK 296 (299)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
..++++.++++++++++.+..+++||||+
T Consensus 544 ~~~i~~~~~~~~~~l~~~~~~~~~~~~r~ 572 (623)
T PLN03150 544 GAKIGIAFGVSVAFLFLVICAMCWWKRRQ 572 (623)
T ss_pred ceEEEEEhHHHHHHHHHHHHHhhheeehh
Confidence 44566666655443333333344455443
No 49
>PHA03264 envelope glycoprotein D; Provisional
Probab=27.51 E-value=59 Score=31.55 Aligned_cols=32 Identities=6% Similarity=0.113 Sum_probs=20.0
Q ss_pred eeEEEEeeehHHHHHHH--HHHheeeeEEeeecc
Q 046873 266 KIRIIVSVTVSIGVLVA--GMITGLLILRRHKKK 297 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~--~~~~~~~~~~~r~~~ 297 (299)
...++||+.+++.+++| .++.+++|++-|||+
T Consensus 359 ~~~~~vg~~~a~~~i~~~aa~~~~~~~~~~r~rg 392 (416)
T PHA03264 359 ARPVIVGTGIAAAAIACVAAAGAVAYFVYTRRRG 392 (416)
T ss_pred cceeeeehhhhHHHHHHHhhhcceeEEEEEeecc
Confidence 45677787777654444 345666777666553
No 50
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=27.40 E-value=54 Score=24.31 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=8.4
Q ss_pred EeeehHHHHHHHHHHhee
Q 046873 271 VSVTVSIGVLVAGMITGL 288 (299)
Q Consensus 271 ~~~~v~~~~~~~~~~~~~ 288 (299)
+.+.|..++++++++++.
T Consensus 32 vaVviPl~L~LCiLvl~y 49 (74)
T PF11857_consen 32 VAVVIPLVLLLCILVLIY 49 (74)
T ss_pred EEEeHHHHHHHHHHHHHH
Confidence 344445454444444443
No 51
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=27.39 E-value=87 Score=25.07 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=21.7
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeec
Q 046873 180 EDTADVRIAYNSTTKNLSVSWTYR 203 (299)
Q Consensus 180 G~~~~v~I~Yd~~~~~L~V~l~~~ 203 (299)
|+++++.+.||+..+.++++++..
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~ 84 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGV 84 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCE
Confidence 889999999999989999999754
No 52
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=27.17 E-value=83 Score=27.30 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=24.9
Q ss_pred ccCCCCeeEEEEEEeCCCCeEEEEEeec
Q 046873 176 SFHSEDTADVRIAYNSTTKNLSVSWTYR 203 (299)
Q Consensus 176 ~l~~G~~~~v~I~Yd~~~~~L~V~l~~~ 203 (299)
...+|+++++-++||+.+++++++++..
T Consensus 86 ~~~~g~W~hv~~t~d~~~g~~~lyvnG~ 113 (201)
T cd00152 86 PESDGAWHHICVTWESTSGIAELWVNGK 113 (201)
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEECCE
Confidence 3489999999999999999999999764
No 53
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=26.82 E-value=46 Score=32.34 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=10.0
Q ss_pred HHHHheeeeEEeeec
Q 046873 282 AGMITGLLILRRHKK 296 (299)
Q Consensus 282 ~~~~~~~~~~~~r~~ 296 (299)
++++++++++|||||
T Consensus 359 lllg~~~~~~~rk~k 373 (374)
T TIGR03503 359 LLLGGIGFFVWRKKK 373 (374)
T ss_pred hhhheeeEEEEEEee
Confidence 345577777788776
No 54
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=24.69 E-value=2e+02 Score=30.06 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=13.7
Q ss_pred CceeEEEEeeehHHHHHHHHHHheeeeEEe
Q 046873 264 GKKIRIIVSVTVSIGVLVAGMITGLLILRR 293 (299)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 293 (299)
+..+.+++++.++.++++++ ++.++|||
T Consensus 387 ~~~t~~~~~~f~~if~iva~--ii~~~L~R 414 (807)
T KOG1094|consen 387 GSPTAILIIIFVAIFLIVAL--IIALMLWR 414 (807)
T ss_pred CCCceehHHHHHHHHHHHHH--HHHHHHHH
Confidence 33456666665554444333 33445555
No 55
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=24.11 E-value=22 Score=29.05 Aligned_cols=7 Identities=57% Similarity=0.619 Sum_probs=3.6
Q ss_pred EEeecCC
Q 046873 232 FSAATGL 238 (299)
Q Consensus 232 FSAsTG~ 238 (299)
.+++||+
T Consensus 37 lt~atgg 43 (129)
T PF15099_consen 37 LTAATGG 43 (129)
T ss_pred HhccCCC
Confidence 3455554
No 56
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.54 E-value=30 Score=30.91 Aligned_cols=18 Identities=11% Similarity=0.421 Sum_probs=9.3
Q ss_pred ceeEEEEeeehHHHHHHH
Q 046873 265 KKIRIIVSVTVSIGVLVA 282 (299)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~ 282 (299)
....+++|+.-|++.+++
T Consensus 35 d~~~I~iaiVAG~~tVIL 52 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVIL 52 (221)
T ss_pred cceeeeeeeecchhhhHH
Confidence 345666666544444433
No 57
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.53 E-value=27 Score=25.13 Aligned_cols=24 Identities=25% Similarity=0.066 Sum_probs=17.2
Q ss_pred eeEEEEeeehHHHHHHHHHHheee
Q 046873 266 KIRIIVSVTVSIGVLVAGMITGLL 289 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~ 289 (299)
.-++|+-++|++.+++++++-.++
T Consensus 11 nPGlIVLlvV~g~ll~flvGnyvl 34 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLVGNYVL 34 (69)
T ss_pred CCCeEEeehHHHHHHHHHHHHHHH
Confidence 447888888888877776655543
No 58
>PHA03286 envelope glycoprotein E; Provisional
Probab=22.25 E-value=14 Score=36.58 Aligned_cols=9 Identities=11% Similarity=-0.234 Sum_probs=5.0
Q ss_pred EEEEEeccc
Q 046873 137 VHVEFDTFF 145 (299)
Q Consensus 137 vAVEFDT~~ 145 (299)
..|-+=|.+
T Consensus 155 ~~vflVtV~ 163 (492)
T PHA03286 155 MDVLVVWVS 163 (492)
T ss_pred EEEEEEEEe
Confidence 345566664
No 59
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.23 E-value=1.1e+02 Score=23.69 Aligned_cols=6 Identities=0% Similarity=-0.440 Sum_probs=2.7
Q ss_pred Eeeecc
Q 046873 292 RRHKKK 297 (299)
Q Consensus 292 ~~r~~~ 297 (299)
|..+||
T Consensus 89 ~f~~r~ 94 (96)
T PTZ00382 89 WFVCRG 94 (96)
T ss_pred eeEEee
Confidence 444444
No 60
>PF04901 RAMP: Receptor activity modifying family ; InterPro: IPR006985 The calcitonin-receptor-like receptor can function as either a calcitonin-gene-related peptide or an adrenomedullin receptor. The receptors function is modified by receptor activity modifying protein or RAMP. RAMPs are single-transmembrane-domain proteins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0008277 regulation of G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2YX8_A 3N7R_C 3N7P_D 3N7S_C 2XVT_A 3AQF_A 3AQE_B.
Probab=20.66 E-value=33 Score=27.56 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=0.0
Q ss_pred HheeeeEEeeeccc
Q 046873 285 ITGLLILRRHKKKE 298 (299)
Q Consensus 285 ~~~~~~~~~r~~~~ 298 (299)
.++.+++||.|+.|
T Consensus 98 ~m~~LVVw~sK~~e 111 (113)
T PF04901_consen 98 LMTALVVWRSKRSE 111 (113)
T ss_dssp --------------
T ss_pred HHHHheeeeccCcC
Confidence 35677889988866
No 61
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=20.13 E-value=36 Score=25.93 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=11.3
Q ss_pred eEEEEeeehHHHHHHHHHHhe-eeeEEeeec
Q 046873 267 IRIIVSVTVSIGVLVAGMITG-LLILRRHKK 296 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~r~~ 296 (299)
+.+++....++++++++.+++ .++..|+++
T Consensus 50 K~i~iS~ias~la~lv~t~~G~g~y~~~kk~ 80 (85)
T TIGR01495 50 KIILYSSIASGLALLVGAGVGLGYYYKKKNK 80 (85)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 344444333333333333333 234344443
Done!