BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046876
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 126/329 (38%), Gaps = 77/329 (23%)
Query: 149 KEAETVVFGAIDELLSKTGVKAKDIGILV-VNCSGFCPAPSLSAMIVNHYKLRGNIMSYN 207
+EA++ V I L + A DI +++ V+C+GF PSL+A ++N
Sbjct: 82 REAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIP 140
Query: 208 LGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLYWYFGNDRSM--LVSNCLFRMG 265
+ +GC+A +++ A +P + AL+++ E +L Y D + L+ N LF G
Sbjct: 141 IAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSL-CYQPTDLGVGSLLCNGLFGDG 199
Query: 266 GAAILLXXXXXXXXXXKYQLIHTVRTHKGADDRCYNCILQREDDTKRVGVSLSKDLMAVA 325
AA + VR G GV L ++
Sbjct: 200 IAAAV------------------VRGRGG------------------TGVRLERN----- 218
Query: 326 GEALTTNITILAPLVLPMSE-------KLLFFATLVAKKVFKMKIEPYIPDFK-LAFEH- 376
++P +E K F L+ K+V +EP P K LA EH
Sbjct: 219 -----------GSYLIPKTEDWIMYDVKATGFHFLLDKRV-PATMEPLAPALKELAGEHG 266
Query: 377 --------FCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEA 428
+ +HAGG +LD+L LE+ SR TL +GN L
Sbjct: 267 WDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFD 326
Query: 429 KGRMRKGDRTWQIAFGSGFKCNSAV--WQ 455
+G + +G R FG G ++ WQ
Sbjct: 327 EGGVEEGARGLLAGFGPGITAEMSLGCWQ 355
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 169 KAKDIGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQ 228
+A +IG+LV+ S AP + IV L +I + MGC+AA+ ++ A ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 229 LHPNSYALVMSMENITLYWYFGNDRSMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHT 288
HP ALV+ +E ++ F +D + +V + LF G AA+++ +++
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 289 VRTHKGADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNIT-ILAPLVLPMSEKL 347
VR+ ++ +L +D G+ L + + E L+ N+ + V P+ ++
Sbjct: 249 VRS-------SFSQLLDNTED----GIVLGVNHNGITCE-LSENLPGYIFSGVAPVVTEM 296
Query: 348 LFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMT 407
L+ L I D L + IH GG ++++ ++L +S S
Sbjct: 297 LWDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDV 340
Query: 408 LYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTW-QIAFGSGFKCNSAVWQALR 458
L RFGN + L + K T AFG G ++ +R
Sbjct: 341 LARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 169 KAKDIGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQ 228
+A +IG+LV+ S AP + IV L +I + MGC+AA+ ++ A ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 229 LHPNSYALVMSMENITLYWYFGNDRSMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHT 288
HP ALV+ +E ++ F +D + +V + LF G AA+++ +++
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 289 VRTHKGADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNIT-ILAPLVLPMSEKL 347
VR+ ++ +L +D G+ L + + E L+ N+ + V P+ ++
Sbjct: 249 VRS-------SFSQLLDNTED----GIVLGVNHNGITCE-LSENLPGYIFSGVAPVVTEM 296
Query: 348 LFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMT 407
L+ L I D L + IH GG ++++ ++L +S S
Sbjct: 297 LWDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDV 340
Query: 408 LYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTW-QIAFGSGFKCNSAVWQALR 458
L RFGN + L + K T AFG G ++ +R
Sbjct: 341 LARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 136/351 (38%), Gaps = 54/351 (15%)
Query: 117 KKILERSGL-GQHTYFPEVVMRFPPNPCMAEAR----------KEAETVVFGAIDELLSK 165
++I ER+ + +H Y E +++ PN C +A +E V A + + +
Sbjct: 58 QRICERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKE 117
Query: 166 TGVKAKDIGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQ 225
G I L+ + P + ++ L ++ Y + GC A + LAK
Sbjct: 118 WGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKD 177
Query: 226 LLQLHPNSYALVMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXKY 283
L + + ++ L++ EN ++ + ++ M LV LF G AAI++ +
Sbjct: 178 LAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIII--GSDPVPEVEN 235
Query: 284 QLIHTVRTHKGADDRCYNCI--LQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVL 341
L V T + + I L RE V L+ L + ++ NI
Sbjct: 236 PLFEIVSTDQQLVPNSHGAIGGLLRE-------VGLTFYLNKSVPDIISQNIN------- 281
Query: 342 PMSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHM 401
++K + I Y F +A H GGRA+LD++E+ + L M
Sbjct: 282 ----------DALSKAFDPLGISDYNSIFWIA------HPGGRAILDQVEEKVNLKPEKM 325
Query: 402 EPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
+ +R L +GN ++ + K + G +T W + FG G
Sbjct: 326 KATRDVLSNYGNMSSACVFFIMDLMRKKS-LEAGLKTTGEGLDWGVLFGFG 375
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 126/340 (37%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + GC A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/376 (20%), Positives = 145/376 (38%), Gaps = 60/376 (15%)
Query: 117 KKILERSGLGQ-HTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKAKD- 172
K+I E++ + + + E ++ P C MA + + +V + L + VKA D
Sbjct: 62 KRICEKTAIKKRYLALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDE 121
Query: 173 -------IGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQ 225
I L+ + P +V L ++ Y L G +A + LAK
Sbjct: 122 WGLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKD 181
Query: 226 LLQLHPNSYALVMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK- 282
L + + S L++ E + ++ N+ + LV+ LF G AA+++
Sbjct: 182 LAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPI 241
Query: 283 YQLIHTVRTHKGADDRCYNCILQREDDT----KRVGVSLSKDLMAVAGEALTTNITILAP 338
++++ T +T ++ L+ T + V + ++K++ A +AL+
Sbjct: 242 FEIVSTDQTILPDTEKAMKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALS-------- 293
Query: 339 LVLPMSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQ 398
P+ I D+ F + +H GGRA+LD++E+ L L +
Sbjct: 294 ---PLG----------------------ITDWNSVF--WMVHPGGRAILDQVERKLNLKE 326
Query: 399 WHMEPSRMTLYRFGNTXXXXXWYGL----AYSEAKGRMRKG---DRTWQIAFGSGFKCNS 451
+ SR L +GN + + S A+G+ G D FG G +
Sbjct: 327 DKLRASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVET 386
Query: 452 AVWQALRTINPAKEKN 467
V +++R N
Sbjct: 387 VVLRSVRVTAAVANGN 402
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 113/304 (37%), Gaps = 38/304 (12%)
Query: 167 GVKAKDIGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQL 226
G A DI LVV + P + +V LR ++ L GC A ++ LAK L
Sbjct: 142 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 201
Query: 227 LQLHPNSYALVMSMENITLYWYFGND----RSMLVSNCLFRMGGAAILLXXXXXXXXXXK 282
+ + LV++ E +TL ++ G D R++LV LF G AA+++
Sbjct: 202 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQG-LFGDGAAAVIVGADADDVERPL 259
Query: 283 YQLIHTVRTHKGADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLP 342
++++ +T D N +R+ L + + + G+ + +
Sbjct: 260 FEIVSAAQTIIPESDHALNMRFTE----RRLDGVLGRQVPGLIGDNVERCL--------- 306
Query: 343 MSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHME 402
L F L+ + + + +H G ++D+++ L L +
Sbjct: 307 ----LDMFGPLLGGDGGGGWNDLF----------WAVHPGSSTIMDQVDAALGLEPGKLA 352
Query: 403 PSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTW-----QIAFGSGFKCNSAVWQAL 457
SR L +GN + L + + W +AFG G ++ + A
Sbjct: 353 ASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHAT 412
Query: 458 RTIN 461
+N
Sbjct: 413 SHVN 416
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 125/340 (36%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDAHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 353 LVAKKVFKMKIEP----YIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTL 408
L++K + K+ EP + P + F + +H GG A+LD++E L LS M+ SR L
Sbjct: 287 LISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVL 344
Query: 409 YRFGN 413
+GN
Sbjct: 345 ASYGN 349
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 125/340 (36%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDVHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 113/301 (37%), Gaps = 46/301 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 N 413
N
Sbjct: 336 N 336
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 125/340 (36%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 125/340 (36%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDLHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 125/340 (36%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 67 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 126
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 127 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 186
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 187 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 246
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 247 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 279
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 280 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 334
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 335 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 113/302 (37%), Gaps = 48/302 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + ++ + L + VKA I L
Sbjct: 72 RYMYLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHL 131
Query: 177 VVNCSGFCPA-PSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYA 235
+V CS P P + LR + + GC A + LAK L + + +
Sbjct: 132 IV-CSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARV 190
Query: 236 LVMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTH 292
LV+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 191 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 250
Query: 293 KGADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFAT 352
+ + L+ L+ L + ++ NIT
Sbjct: 251 APDSEGAIDGHLRE--------AGLTFHLKGAVPDIVSKNIT------------------ 284
Query: 353 LVAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRF 411
K EP I D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 285 ----KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 338
Query: 412 GN 413
GN
Sbjct: 339 GN 340
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 125/340 (36%), Gaps = 53/340 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDFHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 NTXXXXXWYGLAYSEAKGRMRKGDRT------WQIAFGSG 446
N + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 113/301 (37%), Gaps = 46/301 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 280
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 281 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 413 N 413
N
Sbjct: 336 N 336
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 111/299 (37%), Gaps = 38/299 (12%)
Query: 167 GVKAKDIGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQL 226
G A DI LVV + P + +V LR ++ L GC A ++ LAK L
Sbjct: 112 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 171
Query: 227 LQLHPNSYALVMSMENITLYWYFGND----RSMLVSNCLFRMGGAAILLXXXXXXXXXXK 282
+ + LV++ E +TL ++ G D R++LV LF G AA+++
Sbjct: 172 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQG-LFGDGAAAVIVGADADDVERPL 229
Query: 283 YQLIHTVRTHKGADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLP 342
++++ +T D N +R+ L + + + G+ + +
Sbjct: 230 FEIVSAAQTIIPESDHALNMRFTE----RRLDGVLGRQVPGLIGDNVERCL--------- 276
Query: 343 MSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHME 402
L F L+ + + + +H G ++D+++ L L +
Sbjct: 277 ----LDMFGPLLGGDGGGGWNDLF----------WAVHPGSSTIMDQVDAALGLEPGKLA 322
Query: 403 PSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTW-----QIAFGSGFKCNSAVWQA 456
SR L +GN + L + + W +AFG G ++ + A
Sbjct: 323 ASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 352 TLVAKKVFKMKIEPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMT 407
TL+++ V K + + P D+ F + H GG A+LD +E L L + +E +R
Sbjct: 860 TLISENVEKCLTQAFDPLGISDWNSLF--WIAHPGGPAILDAVEAKLNLDKKKLEATRHV 917
Query: 408 LYRFGNTXXXXXWYGLAYSEAKGRMRKGDRT-------WQIAFGSG 446
L +GN + L E + + KG+R W + FG G
Sbjct: 918 LSEYGNMSSACVLFIL--DEMRKKSLKGERATTGEGLDWGVLFGFG 961
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 123/322 (38%), Gaps = 66/322 (20%)
Query: 117 KKILERSGLGQ-HTYFPEVVMRFPPNPCM------AEARK-----EAETVVFGAIDELLS 164
K+I ERS + Q + Y E +++ P+ C +AR+ E + A ++ +
Sbjct: 63 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 122
Query: 165 KTGVKAKDIGILVVNCSGFCPA-PSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLA 223
+ G I L+ CS P P + L ++ + GC A + +A
Sbjct: 123 EWGQSKSGITHLIF-CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMA 181
Query: 224 KQLLQLHPNSYALVMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXX 281
K L + + + LV+ E + + ++ + LV LF G +A+++
Sbjct: 182 KDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIV---------- 231
Query: 282 KYQLIHTVRTHKGAD------DRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITI 335
GAD C+ + T + V S+ A+ G+ +T
Sbjct: 232 ------------GADPIPQVEKACFEIVW-----TAQTVVPNSEG--AIGGKVREVGLTF 272
Query: 336 LAPLVLPMSEKLLFFATLVAKKVFKMKIEPY----IPDFKLAFEHFCIHAGGRAVLDELE 391
+P L++ + +E + I D+ F + +H GGRA+LD +E
Sbjct: 273 QLKGAVP---------DLISANIENCMVEAFSQFKISDWNKLF--WVVHPGGRAILDRVE 321
Query: 392 KNLELSQWHMEPSRMTLYRFGN 413
L L + P+R + +GN
Sbjct: 322 AKLNLDPTKLIPTRHVMSEYGN 343
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 123/322 (38%), Gaps = 66/322 (20%)
Query: 117 KKILERSGLGQ-HTYFPEVVMRFPPNPCM------AEARK-----EAETVVFGAIDELLS 164
K+I ERS + Q + Y E +++ P+ C +AR+ E + A ++ +
Sbjct: 79 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 138
Query: 165 KTGVKAKDIGILVVNCSGFCPA-PSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLA 223
+ G I L+ CS P P + L ++ + GC A + +A
Sbjct: 139 EWGQSKSGITHLIF-CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMA 197
Query: 224 KQLLQLHPNSYALVMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXX 281
K L + + + LV+ E + + ++ + LV LF G +A+++
Sbjct: 198 KDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIV---------- 247
Query: 282 KYQLIHTVRTHKGAD------DRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITI 335
GAD C+ + T + V S+ A+ G+ +T
Sbjct: 248 ------------GADPIPQVEKACFEIVW-----TAQTVVPNSEG--AIGGKVREVGLTF 288
Query: 336 LAPLVLPMSEKLLFFATLVAKKVFKMKIEPY----IPDFKLAFEHFCIHAGGRAVLDELE 391
+P L++ + +E + I D+ F + +H GGRA+LD +E
Sbjct: 289 QLKGAVP---------DLISANIENCMVEAFSQFKISDWNKLF--WVVHPGGRAILDRVE 337
Query: 392 KNLELSQWHMEPSRMTLYRFGN 413
L L + P+R + +GN
Sbjct: 338 AKLNLDPTKLIPTRHVMSEYGN 359
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 187 PSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLY 246
PS ++++ + + + M++++ C A + +D+A ++L+ YALV+ E L
Sbjct: 105 PSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAARMLERGEIDYALVVDGETANLV 163
Query: 247 WYFGNDR--SMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDRC---YN 301
+ +R S V+ FR AA+ L + +L+ +KG R +N
Sbjct: 164 YEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWN 223
Query: 302 CILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVFKM 361
+ + D + T+ +L + +++K + AK+V
Sbjct: 224 KLCRGNLDR------------------MVTDTRLLLIEGIKLAQKTF----VAAKQVLGW 261
Query: 362 KIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSR-MTLY-RFGNTXXXXX 419
+E + F IH R K+ + ++P++ MT++ GN
Sbjct: 262 AVEE--------LDQFVIHQVSRPHTAAFVKS-----FGIDPAKVMTIFGEHGNIGPASV 308
Query: 420 WYGLAYSEAKGRMRKGDRTWQIAFGSGFKCNSA--VW 454
L+ + GR++KGDR + GSG C+ A VW
Sbjct: 309 PIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 187 PSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLY 246
PS ++++ + + + M++++ C A + +D+A ++L+ YALV+ E L
Sbjct: 104 PSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAARMLERGEIDYALVVDGETANLV 162
Query: 247 WYFGNDR--SMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDRC---YN 301
+ +R S V+ FR AA+ L + +L+ +KG R +N
Sbjct: 163 YEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWN 222
Query: 302 CILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVFKM 361
+ + D + T+ +L + +++K + AK+V
Sbjct: 223 KLCRGNLDR------------------MVTDTRLLLIEGIKLAQKTF----VAAKQVLGW 260
Query: 362 KIEPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSR-MTLY-RFGNTXXXXX 419
+E + F IH R K+ + ++P++ MT++ GN
Sbjct: 261 AVEE--------LDQFVIHQVSRPHTAAFVKS-----FGIDPAKVMTIFGEHGNIGPASV 307
Query: 420 WYGLAYSEAKGRMRKGDRTWQIAFGSGFKCNSA--VW 454
L+ + GR++KGDR + GSG C+ A VW
Sbjct: 308 PIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 112/300 (37%), Gaps = 46/300 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 66 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 125
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 126 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 185
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 186 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 245
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 246 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 278
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 279 ---KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 333
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 112/301 (37%), Gaps = 46/301 (15%)
Query: 127 QHTYFPEVVMRFPPNPC--MAEARKEAETVVFGAIDELLSKTGVKA--------KDIGIL 176
++ Y E +++ PN C MA + + +V + L + VKA I L
Sbjct: 67 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 126
Query: 177 VVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYAL 236
+V + P + LR + Y + G A + LAK L + + + L
Sbjct: 127 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 186
Query: 237 VMSMENITLYWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 293
V+ E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 187 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 246
Query: 294 GADDRCYNCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATL 353
+ + L+ T L KD+ + ++ NIT
Sbjct: 247 PDSEGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT------------------- 279
Query: 354 VAKKVFKMKIEPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFG 412
K EP I D+ F + GG A+LD++E+ L L M +R L +G
Sbjct: 280 ---KALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEYG 334
Query: 413 N 413
N
Sbjct: 335 N 335
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 380 HAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAY----SEAKGRMRKG 435
H GGRA+LD++E L+L +R L+ +GN Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 436 DR-TWQI--AFGSGFKCNSAVWQAL 457
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 380 HAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAY----SEAKGRMRKG 435
H GGRA+LD++E L+L +R L+ +GN Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 436 DR-TWQI--AFGSGFKCNSAVWQAL 457
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 353 LVAKKVFKMKIEPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSQWHMEPSRMTL 408
+V+K + K +E + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 274 IVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 409 YRFGN 413
+GN
Sbjct: 332 SEYGN 336
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 128/315 (40%), Gaps = 46/315 (14%)
Query: 150 EAETVVFGAIDELLSKTGVKAKDIGILV-VNCSGFCPAPSLSAMIVNHYKLRGNIMSYNL 208
+A A + L G+ + IG+LV + S PS ++++ + + + +++++
Sbjct: 60 QASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDV 119
Query: 209 GGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLYWYFGNDR--SMLVSNCLFRMGG 266
C A + +D+A ++L+ YALV+ E L + +R S V+ FR
Sbjct: 120 AN-ACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNEL 178
Query: 267 AAILLXXXXXXXXXXKYQLIHTVRTHKGADDRC---YNCILQREDDTKRVGVSLSKDLMA 323
AA+ L + +L+ +KG R +N + + D
Sbjct: 179 AALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDR------------- 225
Query: 324 VAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAGG 383
+ T+ +L + +++K L A++V ++ + F IH
Sbjct: 226 -----MVTDTRLLLIEGIKLAQKTF----LAARQVLGWAVDE--------LDQFVIHQVS 268
Query: 384 RAVLDELEKNLELSQWHMEPSR-MTLY-RFGNTXXXXXWYGLAYSEAKGRMRKGDRTWQI 441
R K+ + ++P++ MT++ GN L+ + GR++KGDR +
Sbjct: 269 RPHTAAFVKS-----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALL 323
Query: 442 AFGSGFKCNSA--VW 454
GSG C+ A VW
Sbjct: 324 GIGSGLNCSMAEVVW 338
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 377 FCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGN 413
+ +H GG A+LD++E LEL + + SR L +GN
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGN 354
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 118/311 (37%), Gaps = 41/311 (13%)
Query: 144 MAEARKEAETVVFGAIDELLSKTGVKAKDIGILVVNCSGFCPA-PSLSAMIVNHYKLRGN 202
+A + T+ F A + G++ IG++VV + A PS + I + ++G
Sbjct: 44 IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG- 102
Query: 203 IMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLYWYFGNDRSMLVSNCLF 262
++++ C+ ++ +A Q ++ YALV+ ++ DR ++ +F
Sbjct: 103 CPAFDVAA-ACAGFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IF 157
Query: 263 RMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDRCYNCILQREDDTKRVGVSLSKDLM 322
G A +L + TH AD Y +L + RV S L
Sbjct: 158 GDGAGAAVLAASEEPGI---------ISTHLHADG-SYGELLTLPN-ADRVNPENSIHLT 206
Query: 323 AVAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAG 382
E +T LA +V TL A + + +++ +P H
Sbjct: 207 MAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP-----------HQA 246
Query: 383 GRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTWQIA 442
++ K L +S M+ +TL R GNT L + GR++ G A
Sbjct: 247 NLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEA 303
Query: 443 FGSGFKCNSAV 453
FG GF SA+
Sbjct: 304 FGGGFTWGSAL 314
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 377 FCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGD 436
F H ++D + L L W E + + R+GNT L + GR+R+GD
Sbjct: 243 FVPHQANLRIIDAARERLGLP-W--ERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGD 299
Query: 437 RTWQIAFGSGFKCNSAV 453
++FG+G +AV
Sbjct: 300 HVLLVSFGAGLTWAAAV 316
>pdb|1AQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1AQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 186 APSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITL 245
AP A++ N + N G A+ISVD AK++ + HP+SYALV + +T
Sbjct: 106 APLKRAILSNGAPDMLQALVANAGLTDSFDAVISVD-AKRVFKPHPDSYALVEEVLGVT- 163
Query: 246 YWYFGNDRSMLVSNCLFRMGGA 267
+ VS+ F +GGA
Sbjct: 164 -----PAEVLFVSSNGFDVGGA 180
>pdb|1QQ5|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1QQ5|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 186 APSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITL 245
AP A++ N + N G A+ISVD AK++ + HP+SYALV + +T
Sbjct: 106 APLKRAILSNGAPDMLQALVANAGLTDSFDAVISVD-AKRVFKPHPDSYALVEEVLGVT- 163
Query: 246 YWYFGNDRSMLVSNCLFRMGGA 267
+ VS+ F +GGA
Sbjct: 164 -----PAEVLFVSSNGFDVGGA 180
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 339 LVLPMSEKL----LFFATLVAKKVFKMKIE--PYIPDFKLA--------FEHFCIHAGGR 384
L LP ++++ T+ +VFK+ + +I D LA + H
Sbjct: 212 LTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANL 271
Query: 385 AVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTWQIAFG 444
++ K L +S M+ +TL R GNT L + GR++ G AFG
Sbjct: 272 RIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFG 328
Query: 445 SGFKCNSAV 453
GF SA+
Sbjct: 329 GGFTWGSAL 337
>pdb|1QQ7|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ7|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
pdb|1QQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
Length = 253
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 186 APSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITL 245
AP A++ N + N G A+ISVD AK++ + HP+SYALV + +T
Sbjct: 106 APLKRAILSNGAPDMLQALVANAGLTDSFDAVISVD-AKRVFKPHPDSYALVEEVLGVT- 163
Query: 246 YWYFGNDRSMLVSNCLFRMGGA 267
+ VS+ F +GGA
Sbjct: 164 -----PAEVLFVSSNGFDVGGA 180
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 339 LVLPMSEKL----LFFATLVAKKVFKMKIE--PYIPDFKLA--------FEHFCIHAGGR 384
L LP ++++ T+ +VFK+ + +I D LA + H
Sbjct: 189 LTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANL 248
Query: 385 AVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTWQIAFG 444
++ K L +S M+ +TL R GNT L + GR++ G AFG
Sbjct: 249 RIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFG 305
Query: 445 SGFKCNSAV 453
GF SA+
Sbjct: 306 GGFTWGSAL 314
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 377 FCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGL----AYSEAKGRM 432
+ H G A++D +E L+LS + +R +GN ++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 433 RKGDR-TWQI--AFGSGFKCNSAVWQAL 457
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 377 FCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGL----AYSEAKGRM 432
+ H G A++D +E L+LS + +R +GN ++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 433 RKGDR-TWQI--AFGSGFKCNSAVWQAL 457
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 115/311 (36%), Gaps = 41/311 (13%)
Query: 144 MAEARKEAETVVFGAIDELLSKTGVKAKDIGILVVNCSGFCPA-PSLSAMIVNHYKLRGN 202
+A + T F A + G++ IG++VV + A PS + I + ++G
Sbjct: 44 IAAPNETVSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG- 102
Query: 203 IMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLYWYFGNDRSMLVSNCLF 262
++++ C+ ++ +A Q ++ YALV+ ++ DR ++ +F
Sbjct: 103 CPAFDVAAA-CAGFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IF 157
Query: 263 RMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDRCYNCILQREDDTKRVGVSLSKDLM 322
G A +L + TH AD Y +L + RV S L
Sbjct: 158 GDGAGAAVLAASEEPGI---------ISTHLHADG-SYGELLTLPN-ADRVNPENSIHLT 206
Query: 323 AVAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHAG 382
E +T LA +V TL A + +++ +P H
Sbjct: 207 XAGNEVFKVAVTELAHIVDE---------TLAANNNDRSQLDWLVP-----------HQA 246
Query: 383 GRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTWQIA 442
++ K L S ++ +TL R GNT L + GR++ G A
Sbjct: 247 NLRIISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEA 303
Query: 443 FGSGFKCNSAV 453
FG GF SA+
Sbjct: 304 FGGGFTWGSAL 314
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 377 FCIHAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGD 436
F +H R +LD L K +++ + H P M GNT L A G + +G
Sbjct: 289 FVLHQANRFMLDALRKKMKIPE-HKFPVLME--HCGNTVSSTLPLALETMRANGTLARGM 345
Query: 437 RTWQIAFGSGFK 448
R + FG G+
Sbjct: 346 RLMLLGFGVGYS 357
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 380 HAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAK----GRMRKG 435
H GG A+LD++ + L + ++ +R L +GN ++ + K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 436 DR-TWQIAFGSG 446
+ W + FG G
Sbjct: 359 EGLEWGVLFGFG 370
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 380 HAGGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAK----GRMRKG 435
H GG A+LD++ + L + ++ +R L +GN ++ + K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 436 DR-TWQIAFGSG 446
+ W + FG G
Sbjct: 359 EGLEWGVLFGFG 370
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 163 LSKTGVKAKDIGILVVNCSGFCPAPSLSAMIVNHYKLRGNIMSYNLGGMGCSAALISVDL 222
L G+ D+ L+ + S P L + N LRG+ M C A S+ L
Sbjct: 149 LQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLAL 208
Query: 223 AKQLLQLHPNSYALVMSMENITLYWYFGNDR-SMLVSNCLF 262
A L+ P+ LV+ E ++ + +D L+ LF
Sbjct: 209 AADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLF 249
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 349 FFATLVAKKVFKMKIEPYIPDFKLAFE---HFCIHAGGRAVLDELEKNLELSQWHMEPSR 405
+ LVA K ++ D A E H I R EL L L P
Sbjct: 236 YIDLLVAAKTQALE------DAGTAIEDIAHAVIPVSRRGTGHELHDLLGL------PDE 283
Query: 406 MTLYRFGNTX----XXXXWYGLAYSEAKGRMRKGDRTWQIAFGSGFKCNSAVWQALR 458
T + +G T + GLA+ ++ GDR G+G+ C +AV + LR
Sbjct: 284 RTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 349 FFATLVAKKVFKMKIEPYIPDFKLAFE---HFCIHAGGRAVLDELEKNLELSQWHMEPSR 405
+ LVA K ++ D A E H I R EL L L P
Sbjct: 236 YIDLLVAAKTQALE------DAGTAIEDIAHAVIPVSRRGTGHELHDLLGL------PDE 283
Query: 406 MTLYRFGNTX----XXXXWYGLAYSEAKGRMRKGDRTWQIAFGSGFKCNSAVWQALR 458
T + +G T + GLA+ ++ GDR G+G+ C +AV + LR
Sbjct: 284 RTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 110/312 (35%), Gaps = 43/312 (13%)
Query: 144 MAEARKEAETVVFGAIDELLSKTGVKAKDIGILVVNCSGFCPA-PSLSAMIVNHYKLRG- 201
+A + T F A + G++ IG++VV + A PS + I + ++G
Sbjct: 44 IAAPNETVSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGC 103
Query: 202 NIMSYNLGGMGCSAALISVDLAKQLLQLHPNSYALVMSMENITLYWYFGNDRSMLVSNCL 261
G + AL +A Q ++ YALV+ G+D +L C
Sbjct: 104 PAFDVAAAXAGFTYAL---SVADQYVKSGAVKYALVV-----------GSD--VLARTCD 147
Query: 262 FRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDRCYNCILQREDDTKRVGVSLSKDL 321
G I+ + + TH AD Y +L + RV S L
Sbjct: 148 PTDRGTIIIFGDGAGAAVLAASEEPGIISTHLHADG-SYGELLTLPN-ADRVNPENSIHL 205
Query: 322 MAVAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVFKMKIEPYIPDFKLAFEHFCIHA 381
E +T LA +V TL A + + +++ +P H
Sbjct: 206 TXAGNEVFKVAVTELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQ 245
Query: 382 GGRAVLDELEKNLELSQWHMEPSRMTLYRFGNTXXXXXWYGLAYSEAKGRMRKGDRTWQI 441
++ K L S ++ +TL R GNT L + GR++ G
Sbjct: 246 ANLRIISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLE 302
Query: 442 AFGSGFKCNSAV 453
AFG GF SA+
Sbjct: 303 AFGGGFTWGSAL 314
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 301 NCILQREDDTKRVGVSLSKDLMAVAGEALTTNITILAPLVLPMSEKLLFFATLVAKKVF- 359
N IL++ +GV + D +ALT ++ L + P+ EK+ A L+ + V
Sbjct: 277 NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGT 336
Query: 360 --KMKIEP 365
++KIEP
Sbjct: 337 KEELKIEP 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,267,449
Number of Sequences: 62578
Number of extensions: 507944
Number of successful extensions: 1433
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 64
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)