BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046878
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 78/113 (69%), Gaps = 14/113 (12%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQ--- 57
ME K KILIFGGTGY+G +MVK S+ GH T+V+ RP +SK + EFQ
Sbjct: 1 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP-----NSSKTTLLDEFQSLG 55
Query: 58 ------ELDEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVFV 104
ELDEHEK++ ++K+V VVIS +A+PQ+LDQ KI++AIKVAGNIK F+
Sbjct: 56 AIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL 108
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 78/113 (69%), Gaps = 14/113 (12%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQ--- 57
ME K KILIFGGTGY+G +MVK S+ GH T+V+ RP +SK + EFQ
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP-----NSSKTTLLDEFQSLG 59
Query: 58 ------ELDEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVFV 104
ELDEHEK++ ++K+V VVIS +A+PQ+LDQ KI++AIKVAGNIK F+
Sbjct: 60 AIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL 112
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 78/113 (69%), Gaps = 14/113 (12%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQ--- 57
ME K KILIFGGTGY+G +MVK S+ GH T+V+ RP +SK + EFQ
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP-----NSSKTTLLDEFQSLG 59
Query: 58 ------ELDEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVFV 104
ELDEHEK++ ++K+V VVIS +A+PQ+LDQ KI++AIKVAGNIK F+
Sbjct: 60 AIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL 112
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 79/105 (75%), Gaps = 9/105 (8%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQ---------EL 59
KI+I+GGTGY+GK+MV+AS+S H TF+YARP+T +S S +++ +EF+ E+
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 60 DEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVFV 104
+EHEK++S+LK+V +VIS + +P + Q+ I++AIK AGNIK F+
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFL 110
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 76/113 (67%), Gaps = 14/113 (12%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQ--- 57
ME K KILIFGGTGY+G +MVK S+ GH T+V+ RP +SK + EFQ
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP-----NSSKTTLLDEFQSLG 59
Query: 58 ------ELDEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVFV 104
ELDEHEK++ ++K+V VVIS +A PQ LDQ KI++AIKVAGNIK F+
Sbjct: 60 AIIVKGELDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFL 112
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 12/112 (10%)
Query: 5 NTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARP--VTENSRTSKLEIHKEF------ 56
+ K ++LI GGTGY+GK +V AS+S GH T+V RP V+ + L K+
Sbjct: 2 DKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIE 61
Query: 57 QELDEHEKIISILKEVGVVISTVA----YPQLLDQLKIVDAIKVAGNIKVFV 104
LD+H++++ LK+V VVIS +A +L+QLK+V+AIK AGNIK F+
Sbjct: 62 ASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 6 TKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQ-------- 57
++ +IL+ G TGY+G+++ KAS+ GH TF+ R T +S + K ++ + F+
Sbjct: 3 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH 62
Query: 58 -ELDEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVF 103
+D+H ++ +K V VVISTV Q+ Q+ I+ AIK G +K F
Sbjct: 63 GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRF 109
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 6 TKPKILIFGGTGYLGKYMVKASVSSGHNTFVYAR-PVTENSRTSKLEIHKEFQEL----- 59
T+ KILI G TG +G+++V AS+ +G+ T+ R +T + +K E+ +Q L
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 60 ----DEHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVF 103
++HE ++ +K+V +VI + DQ+KI+ AIK AGN+K F
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKF 108
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 5 NTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQE------ 58
+ K ++LI G TG++G+++ AS+ + T++ ARP + SK +I K ++
Sbjct: 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSP--SKAKIFKALEDKGAIIV 65
Query: 59 ---LDEHEKIISILK--EVGVVISTVAYPQLLDQLKIVDAIKVAGNIKVFV 104
++E E + ILK E+ +V+STV +LDQ+ +V A+K G IK F+
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL 116
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISI 68
K + G TG LG + +A ++GH+ + RP ++ R + LE E+ +H +
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA 74
Query: 69 LKEV-GVVISTVAYP 82
L+ + GV+ S YP
Sbjct: 75 LRGLDGVIFSAGYYP 89
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVY----ARPVTENSRTSKLEIHKEF 56
M+ K +ILI GG G++G ++ +A V+SG V P+ T K + K
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF-LEKPV 59
Query: 57 QELDEHEKIISILKEVGVVISTVAYP----QLLDQLKIVDA 93
EL+E + +S ++ V + S + P Q LD L VD+
Sbjct: 60 LELEERD--LSDVRLVYHLASHKSVPRSFKQPLDYLDNVDS 98
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 7 KPKILIFGGTGYLGKYMVKASVSSGH--NTFVYARP 40
K ++ + GGTG+LG +++K+ + +G+ NT + A P
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADP 36
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYARPV 41
KI + GGTG+LG+Y+V++ + G+ + R +
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI 36
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 4 ENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHE 63
E + +ILI GG G++G ++ + GH V T R + I E EL H+
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD 61
Query: 64 KIISILKEV 72
+ + EV
Sbjct: 62 VVEPLYIEV 70
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 4 ENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHE 63
E + +ILI GG G++G ++ GH V T R + I E EL H+
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD 83
Query: 64 KIISILKEV 72
+ + EV
Sbjct: 84 VVEPLYIEV 92
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKL 50
L+ G TG+LG Y+++A H + + R E KL
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKL 193
>pdb|1DIR|A Chain A, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|B Chain B, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|C Chain C, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|D Chain D, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DHR|A Chain A, Crystal Structure Of Rat Liver Dihydropteridine Reductase
Length = 241
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELD 60
M ++L++GG G LG V+A + N +V + V EN S I K
Sbjct: 1 MAASGEARRVLVYGGRGALGSRCVQAFRA--RNWWVASIDVVENEEASASVIVKMTDSFT 58
Query: 61 EHEKIISILKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIK 101
E ++ EVG ++ Q +D + V GN K
Sbjct: 59 EQADQVT--AEVGKLLGD----QKVDAILCVAGGWAGGNAK 93
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILK 70
L+ G TG+LG Y+++A H + + R +N + ++ + E + L
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHRIYCFIR--ADNEEIAWYKLXTNLNDYFSEETVEXXLS 130
Query: 71 EVGVVI 76
+ V++
Sbjct: 131 NIEVIV 136
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 1 MEGENTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTS--KLEI----HK 54
++ E+T +L+ GG GY+G + V + +G++ V A ++ ++ S +LE+ H
Sbjct: 5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVV-ADNLSNSTYDSVARLEVLTKHHI 63
Query: 55 EFQELD 60
F E+D
Sbjct: 64 PFYEVD 69
>pdb|3U4Z|A Chain A, Crystal Structure Of The Tetrahymena Telomerase
Processivity Factor Teb1 Ob-B
pdb|3U4Z|B Chain B, Crystal Structure Of The Tetrahymena Telomerase
Processivity Factor Teb1 Ob-B
Length = 109
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 5 NTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEK 64
N + K++IF Y ++ K S++ + + R + + K IH +E D+ K
Sbjct: 41 NQELKVVIFPDLCY--EWRDKFSINKWYYFNEFVRQIYNDEVQLKNNIHSSIKESDDQRK 98
Query: 65 IISILKEVGV 74
+I+ +E GV
Sbjct: 99 VITYNQEQGV 108
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 9 KILIFGGTGYLGKYMVKASVSSG---------HNTFVYARPVTENSRTSKLEIHK--EFQ 57
K+L+ GG GY+G + V + +G HN F + E+ R + + EF+
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 58 ELD 60
E+D
Sbjct: 64 EMD 66
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 10 ILIFGGTGYLGKYMVKASVSSG 31
ILI GG GY+G + VK V G
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEG 25
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 9 KILIFGGTGYLGKYMVKASVSSG---------HNTFVYARPVTENSRTSKLEIHK--EFQ 57
K+L+ GG GY+G + V + +G HN F + E+ R + + EF+
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 58 ELD 60
E+D
Sbjct: 64 EMD 66
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 9 KILIFGGTGYLGKYMVKASVSSG---------HNTFVYARPVTENSRTSKLEIHK--EFQ 57
K+L+ GG GY+G + V + +G HN F + E+ R + + EF+
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 58 ELD 60
E+D
Sbjct: 64 EMD 66
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISI 68
++L++GG G LG V+A + N +V + V EN S I K E ++
Sbjct: 12 RVLVYGGRGALGSRCVQAFRA--RNWWVASVDVVENEEASASIIVKMTDSFTEQADQVT- 68
Query: 69 LKEVGVVISTVAYPQLLDQLKIVDAIKVAGNIK 101
EVG ++ + +D + V GN K
Sbjct: 69 -AEVGKLLGE----EKVDAILCVAGGWAGGNAK 96
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
++L+ GG+GY+G + + +GH+ +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTE 43
KI I G TG +GK ++K+ ++ + + AR V +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQ 36
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 9 KILIFGGTGYLGKYMVKASV-SSGHNTFVYARPVTENSRTSKLE----IHKEFQELD 60
++L+ GG GY+G + V+A + + H+ + V + ++ +E + ++ Q+ D
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
Length = 330
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEI 52
+ILI GG G LG +++ + GH V +N T K E+
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEIL-----VIDNFATGKREV 60
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 NTKPKILIFGGTGYLGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHK 54
+TK IL+ GG GY+G + ++ G++ V A + + R + I K
Sbjct: 3 STKGTILVTGGAGYIGSHTAVELLAHGYDV-VIADNLVNSKREAIARIEK 51
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVY 37
K+LI GG G+LG + ++S G + V+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVF 31
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFV 36
KILI GG G++G +V+ + + +T V
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVV 29
>pdb|2Q8Y|A Chain A, Structural Insight Into The Enzymatic Mechanism Of The
Phophothreonine Lyase
pdb|2Z8P|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 19 LGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILKEVGVV 75
+ K + +A VS G +Y +P ENS+ S +HK Q + E + S L E GV+
Sbjct: 140 MEKVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI---ECLESRLSENGVI 193
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 19 LGKYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILKEVGVV 75
+ K + +A VS G +Y +P ENS+ S +HK Q + E + S L E GV+
Sbjct: 140 MEKVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI---ECLESRLSENGVI 193
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 62 HEKIISILKEVGVVISTVAYP---QLLDQLKIVDAIKVAGNIKV 102
HEK I +LK+ G+ + YP +L++ +K V+AI V KV
Sbjct: 13 HEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKV 56
>pdb|1JAX|A Chain A, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
pdb|1JAX|B Chain B, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
pdb|1JAY|A Chain A, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
With Its Substrates Bound
pdb|1JAY|B Chain B, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
With Its Substrates Bound
Length = 212
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 9 KILIFGGTGYLGKYMVKASVSSGHNTFVYAR 39
++ + GGTG LGK + + GH V +R
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSR 32
>pdb|2P1W|A Chain A, Structure Of The Phosphothreonine Lyase Spvc, The Effector
Protein From Salmonella
Length = 250
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 21 KYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILKEVGVV 75
K + +A VS G +Y +P ENS+ S +HK Q + E + S L E GV+
Sbjct: 151 KVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI---ECLESRLSENGVI 202
>pdb|2Z8O|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8O|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 21 KYMVKASVSSGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILKEVGVV 75
K + +A VS G +Y +P ENS+ S +HK Q + E + S L E GV+
Sbjct: 142 KVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI---ECLESRLSENGVI 193
>pdb|1WLX|A Chain A, Solution Structure Of The Third Spectrin Repeat Of Alpha-
Actinin-4
Length = 129
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 30 SGHNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILKEVGVVISTVAYPQLLD 86
S H+ F P + R + L IHKE Q + E I K G T PQ+++
Sbjct: 52 SAHDQFKSTLPDADREREAILAIHKEAQRIAESNHI----KLSGSNPYTTVTPQIIN 104
>pdb|3FRZ|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With
Length = 576
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 32 HNTFVYARPVTENSRTSKLEIHKEFQELDEHEKIISILKEVGVVISTV 79
H+ VYA + K Q+LD+H + +LKE+ STV
Sbjct: 33 HHNMVYATTSRSAGQRQKKVTFDRLQDLDDHYR--DVLKEMKAKASTV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,963,085
Number of Sequences: 62578
Number of extensions: 105626
Number of successful extensions: 444
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 58
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)