Query 046883
Match_columns 292
No_of_seqs 119 out of 415
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:04:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbf_B 60S acidic ribosomal pr 16.0 53 0.0018 23.1 1.2 19 94-112 6-24 (70)
2 3iz5_v 60S acidic ribosomal pr 15.9 35 0.0012 26.5 0.2 19 94-112 5-23 (113)
3 3izc_v 60S acidic ribosomal pr 12.7 67 0.0023 24.5 1.1 18 94-112 5-22 (106)
4 3bp3_A Glucose-specific phosph 11.5 1.2E+02 0.0041 21.7 2.1 18 94-111 7-24 (82)
5 2rod_B NOXA, noxaa; MCL-1, apo 7.4 3.6E+02 0.012 14.9 2.7 20 152-171 6-25 (27)
6 1s5r_A High mobility group box 6.9 1.5E+02 0.0051 16.4 0.7 16 58-73 5-20 (26)
7 3dwa_A SUBB, subtilase cytotox 6.8 2.6E+02 0.0088 21.9 2.3 24 106-129 41-64 (126)
8 1iba_A Glucose permease; phosp 6.3 1.7E+02 0.0058 21.9 1.0 17 94-110 16-32 (101)
9 3l9k_W Dynein intermediate cha 5.8 2.2E+02 0.0074 17.6 1.1 19 238-256 20-38 (38)
10 3qnk_A Putative lipoprotein; a 5.7 7.3E+02 0.025 23.2 5.5 57 198-255 110-167 (517)
No 1
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=16.01 E-value=53 Score=23.14 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCceeeeec
Q 046883 94 VPFLLSHLGSPDTITAFAL 112 (292)
Q Consensus 94 ApfLLlhLGg~DtITAysl 112 (292)
+..||+|+||..+||+-.+
T Consensus 6 yA~Lll~~~g~~~~ta~~I 24 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKDI 24 (70)
T ss_dssp HHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHhCCCCCCCHHHH
Confidence 4568999999988886544
No 2
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=15.90 E-value=35 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCceeeeec
Q 046883 94 VPFLLSHLGSPDTITAFAL 112 (292)
Q Consensus 94 ApfLLlhLGg~DtITAysl 112 (292)
|..||+|+||..+||+-.|
T Consensus 5 aAylL~~l~G~~~ptad~I 23 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDL 23 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTH
T ss_pred HHHHHHHHcCCCCCCHHHH
Confidence 5678999999999987644
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=12.68 E-value=67 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCceeeeec
Q 046883 94 VPFLLSHLGSPDTITAFAL 112 (292)
Q Consensus 94 ApfLLlhLGg~DtITAysl 112 (292)
|..||+|+||.+ ||+-.|
T Consensus 5 aAyLL~~~gG~e-~tad~I 22 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKI 22 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTH
T ss_pred HHHHHHHhcCCC-CCHHHH
Confidence 567899999998 886544
No 4
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=11.47 E-value=1.2e+02 Score=21.71 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCceeeee
Q 046883 94 VPFLLSHLGSPDTITAFA 111 (292)
Q Consensus 94 ApfLLlhLGg~DtITAys 111 (292)
|.-++-.+||.|+|....
T Consensus 7 a~~ii~~lGG~~NI~~v~ 24 (82)
T 3bp3_A 7 APALVAAFGGKENITNLD 24 (82)
T ss_dssp HHHHHHHTTCGGGEEEEE
T ss_pred HHHHHHHhCCHHHHhhhc
Confidence 456788999999998763
No 5
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=7.42 E-value=3.6e+02 Score=14.91 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 046883 152 MFIAGVIKYFERILALYLAS 171 (292)
Q Consensus 152 mfv~GiiKy~eR~~aL~~as 171 (292)
-|.+..-|.|.+++.-++|.
T Consensus 6 efaaqlrkigdkvyctwsap 25 (27)
T 2rod_B 6 EFAAQLRKIGDKVYCTWSAP 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCeeEEeecCC
Confidence 57788889999999888764
No 6
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=6.88 E-value=1.5e+02 Score=16.39 Aligned_cols=16 Identities=6% Similarity=0.083 Sum_probs=12.6
Q ss_pred hhhHHHHHHhhhcccc
Q 046883 58 ADWVVNFGVGLITERA 73 (292)
Q Consensus 58 ad~va~YaLG~l~~~~ 73 (292)
-|+-|.|.|+.|....
T Consensus 5 ~dssavyvlssmar~r 20 (26)
T 1s5r_A 5 MDSSAVYVLSSMARQR 20 (26)
T ss_dssp CSSSHHHHHHHHHHTT
T ss_pred cccchhHHhHHHHHHh
Confidence 3677899999998753
No 7
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=6.75 E-value=2.6e+02 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.5
Q ss_pred ceeeeecCcCCcccchhhhhhhhc
Q 046883 106 TITAFALEDNEFWPRHLFGFIFQV 129 (292)
Q Consensus 106 tITAysleDn~lw~Rhll~l~~Qv 129 (292)
+++|-++.|+.-|.+++-+++-|+
T Consensus 41 ~v~aCaV~~~s~~~~~Fd~~~~~A 64 (126)
T 3dwa_A 41 SISACSMKNSSVWGASFSTLYNQA 64 (126)
T ss_dssp EEEEEEETTCSSSGGGHHHHHHHH
T ss_pred ceeEEEEeccccccccHHHHHHHh
Confidence 688999999999999888876664
No 8
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=6.30 E-value=1.7e+02 Score=21.94 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCCceeee
Q 046883 94 VPFLLSHLGSPDTITAF 110 (292)
Q Consensus 94 ApfLLlhLGg~DtITAy 110 (292)
|.-++-.+||.|+|+..
T Consensus 16 A~~Ii~alGG~eNI~~v 32 (101)
T 1iba_A 16 APALVAAFGGKENITNL 32 (101)
T ss_dssp HHHHTHHHHTCTTCSBC
T ss_pred HHHHHHHhCCHHHHhhh
Confidence 56678889999999875
No 9
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=5.81 E-value=2.2e+02 Score=17.63 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 046883 238 EDVLGIIEVELNLVYEVLY 256 (292)
Q Consensus 238 ~~af~vie~ELsf~yD~lY 256 (292)
+++=||||--|+--||++.
T Consensus 20 ~rsskviERAL~e~yDi~~ 38 (38)
T 3l9k_W 20 VRAGRVIERALSENVDIYT 38 (38)
T ss_dssp HHHHHHHHHHHHHSSCTTC
T ss_pred HHHHHHHHHHHcccccccC
Confidence 6788999999998888763
No 10
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=5.69 E-value=7.3e+02 Score=23.21 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred cchHHhhhhhHHHHhhhhccccccccccccccc-ccccCChhhHHHHHHHHHHHHHHhh
Q 046883 198 RCYLEVGCQYFKIFKGILLELMSNFKRVNFAGP-FFRDFSPEDVLGIIEVELNLVYEVL 255 (292)
Q Consensus 198 ~~~l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~-~~~~~~~~~af~vie~ELsf~yD~l 255 (292)
+-....|+..|.+. +.|-|+|+.......... ...+.+.+++++-|+.+|..+-+.|
T Consensus 110 ea~flRA~~yf~L~-~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~L 167 (517)
T 3qnk_A 110 EVHFLRAMFYFEMV-KRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEML 167 (517)
T ss_dssp HHHHHHHHHHHHHH-HHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-HHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhC
Done!