Query 046883
Match_columns 292
No_of_seqs 119 out of 415
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 09:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bp8c1 d.95.1.1 (C:13-87) Glu 28.0 16 0.0012 24.3 2.4 18 94-111 2-19 (75)
2 d2hg7a1 d.186.2.1 (A:1-60) Pha 8.7 79 0.0058 19.8 1.8 13 6-18 43-55 (60)
3 d3ejna1 a.118.8.6 (A:32-490) U 8.7 2E+02 0.015 23.8 5.4 60 200-260 77-138 (459)
4 d2r6gf2 f.58.1.1 (F:261-504) M 5.3 4.9E+02 0.036 19.4 5.8 48 24-71 34-81 (244)
5 d3cgha1 a.118.8.6 (A:31-537) U 5.2 4.2E+02 0.031 21.8 5.7 54 201-256 107-160 (507)
6 d1j2oa2 g.39.1.3 (A:31-63) Rho 5.1 76 0.0056 17.4 0.2 13 255-267 17-29 (33)
7 d2fi9a1 c.103.1.1 (A:11-128) H 4.5 1.1E+02 0.0081 21.3 0.8 12 100-111 1-12 (118)
8 d1jb0x_ f.23.20.1 (X:) Subunit 4.3 1.6E+02 0.012 15.3 1.1 11 89-99 5-15 (29)
9 d2h3ja1 b.34.1.2 (A:1-75) Hypo 4.2 2.3E+02 0.016 17.9 2.3 41 102-142 7-47 (75)
10 d3ckca1 a.118.8.6 (A:42-551) S 2.8 4.9E+02 0.036 21.7 3.8 53 201-257 116-168 (510)
No 1
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=27.98 E-value=16 Score=24.33 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCceeeee
Q 046883 94 VPFLLSHLGSPDTITAFA 111 (292)
Q Consensus 94 ApfLLlhLGg~DtITAys 111 (292)
|+-++-++||.|+|+...
T Consensus 2 A~~ii~~lGG~~NI~~~~ 19 (75)
T d3bp8c1 2 APALVAAFGGKENITNLD 19 (75)
T ss_dssp HHHHHHHTTCTTTEEEEC
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 566788999999999874
No 2
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=8.75 E-value=79 Score=19.85 Aligned_cols=13 Identities=8% Similarity=0.389 Sum_probs=10.7
Q ss_pred hhhHHHHHHHhHH
Q 046883 6 PDSVRKIWDNCNI 18 (292)
Q Consensus 6 ~~~~~~~w~~w~i 18 (292)
-.++.+||+||+.
T Consensus 43 e~EL~~~w~e~q~ 55 (60)
T d2hg7a1 43 QAELETWWEELQK 55 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 4678899999985
No 3
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025 {Bacteroides fragilis [TaxId: 817]}
Probab=8.73 E-value=2e+02 Score=23.76 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=39.4
Q ss_pred hHHhhhhhHHHHhhhhcccccccccccccccccc--cCChhhHHHHHHHHHHHHHHhhhcCcc
Q 046883 200 YLEVGCQYFKIFKGILLELMSNFKRVNFAGPFFR--DFSPEDVLGIIEVELNLVYEVLYTKIQ 260 (292)
Q Consensus 200 ~l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~~~~--~~~~~~af~vie~ELsf~yD~lYTK~~ 260 (292)
....|+..|.+. +.|-|.|..+........... ..+.+++|+-|+.+|...-+.|=+...
T Consensus 77 ~flRA~~yf~Lv-~~fGdVPy~~~~~~~~~~~~~p~~ds~~eVY~~I~~DL~~Ai~~L~~~~~ 138 (459)
T d3ejna1 77 KFFRAYYFYELT-LRFGDIPYSQALKGEKEEIYTPEYDAQEDVFAGILQELREADEILANDAS 138 (459)
T ss_dssp HHHHHHHHHHHH-HHHSSBCCTTTTC------CCCCCBCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHH-HHhCCcceeccccCCcccccccCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 356788888876 788898876543322222221 235688999999999999888854433
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.31 E-value=4.9e+02 Score=19.36 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHhhhhhHHHHHHhhhcc
Q 046883 24 FSLSLQMVLILFASLRNGTGNKLVISVVWSAYLLADWVVNFGVGLITE 71 (292)
Q Consensus 24 ~Sl~lq~~L~~~~~~Rr~~~~~~lr~~lWlAY~~ad~va~YaLG~l~~ 71 (292)
++..+-+.+...-.+++.+.+++.|.++-+.+...-.++.+....+..
T Consensus 34 ~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~ 81 (244)
T d2r6gf2 34 LTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFN 81 (244)
T ss_dssp HHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444456677788999999999998887666666655554
No 5
>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=5.21 E-value=4.2e+02 Score=21.84 Aligned_cols=54 Identities=13% Similarity=-0.132 Sum_probs=38.4
Q ss_pred HHhhhhhHHHHhhhhcccccccccccccccccccCChhhHHHHHHHHHHHHHHhhh
Q 046883 201 LEVGCQYFKIFKGILLELMSNFKRVNFAGPFFRDFSPEDVLGIIEVELNLVYEVLY 256 (292)
Q Consensus 201 l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~~~~~~~~~~af~vie~ELsf~yD~lY 256 (292)
+..|+..|.+. +.|-|.|..+....... .....+.+++|+-|..+|.-.-+.|=
T Consensus 107 ~lrA~~y~~L~-d~fGdIPy~~a~~~~~~-~~~~ds~~eVY~~Ii~DL~~Ai~~L~ 160 (507)
T d3cgha1 107 VIKVAAMHRVT-DAFGPIPYSQIGANGEI-ATPYDSQEVTYNTFFDELNAAIATLN 160 (507)
T ss_dssp HHHHHHHHHHH-HHHSSBCCTTCCTTCCC-CSCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCeeeeecCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 55678888876 88999987655432211 12234578999999999999988884
No 6
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.07 E-value=76 Score=17.38 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=7.8
Q ss_pred hhcCcchhcccch
Q 046883 255 LYTKIQVTHSVLG 267 (292)
Q Consensus 255 lYTK~~v~~t~~G 267 (292)
+|||+..+.....
T Consensus 17 lytk~nliLCkrD 29 (33)
T d1j2oa2 17 LYYKLGRKLCRRD 29 (33)
T ss_dssp CCCBTTBCCCHHH
T ss_pred HHhhcceeeehhh
Confidence 6777776654443
No 7
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}
Probab=4.52 E-value=1.1e+02 Score=21.35 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=10.9
Q ss_pred HhcCCCceeeee
Q 046883 100 HLGSPDTITAFA 111 (292)
Q Consensus 100 hLGg~DtITAys 111 (292)
|.+||-.|+||+
T Consensus 1 ~f~~~~~I~~Yg 12 (118)
T d2fi9a1 1 HFPGRAPIDAYG 12 (118)
T ss_dssp CBSSCCCEEEEE
T ss_pred CCCCCCcEeeec
Confidence 788999999997
No 8
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.25 E-value=1.6e+02 Score=15.31 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=7.5
Q ss_pred hhHHhHHHHHH
Q 046883 89 LLAFWVPFLLS 99 (292)
Q Consensus 89 l~~~WApfLLl 99 (292)
...+||..||.
T Consensus 5 frt~wa~llla 15 (29)
T d1jb0x_ 5 FRTFWAVLLLA 15 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689987654
No 9
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.23 E-value=2.3e+02 Score=17.89 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.1
Q ss_pred cCCCceeeeecCcCCcccchhhhhhhhceEEEEEEEEecCC
Q 046883 102 GSPDTITAFALEDNEFWPRHLFGFIFQVVAAVYVFLLTLPG 142 (292)
Q Consensus 102 Gg~DtITAysleDn~lw~Rhll~l~~Qv~~a~yv~~~s~~~ 142 (292)
|-.-.|++++-|-++..+|++.++.+--..-+-+.-++..|
T Consensus 7 g~~~~I~g~~~~~~~~~~~rL~~mG~~~G~~v~v~~~~p~g 47 (75)
T d2h3ja1 7 SRSYRITGYSPAISNGYRQRLFSMGLLPGAALRVVRIAPLG 47 (75)
T ss_dssp CCEEEEEEECTTCCTTHHHHHHHHTCCTTCEEEEEECCTTS
T ss_pred CCEEEEEEECCcCCHHHHHHHHHcCCCCCCEEEEEEECCCC
Confidence 44567999987756666789999988877777777666444
No 10
>d3ckca1 a.118.8.6 (A:42-551) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=2.81 E-value=4.9e+02 Score=21.65 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=36.5
Q ss_pred HHhhhhhHHHHhhhhcccccccccccccccccccCChhhHHHHHHHHHHHHHHhhhc
Q 046883 201 LEVGCQYFKIFKGILLELMSNFKRVNFAGPFFRDFSPEDVLGIIEVELNLVYEVLYT 257 (292)
Q Consensus 201 l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~~~~~~~~~~af~vie~ELsf~yD~lYT 257 (292)
...|+..|.+. +.|-|+|+........ -.+.+.+++++.|+.||..+-..|..
T Consensus 116 flRA~~yf~L~-~~yG~VPl~~~~~~~~---~~r~s~~ev~~~I~~dL~~A~~~Lp~ 168 (510)
T d3ckca1 116 FLRALHYWYFL-DLFGKAPFKEHFSNDL---PVEKKGTELYTYIQNELNEIEADMYE 168 (510)
T ss_dssp HHHHHHHHHHH-HHHSEEEECSSCSSSC---CEEEEHHHHHHHHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHHH-HHcCceEEEecccccc---CCcCCHHHHHHHHHHHHHHHHhcccC
Confidence 45677888876 7788888653321111 12235689999999999999888864
Done!