BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046884
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 131/257 (50%), Gaps = 29/257 (11%)
Query: 4 QSADGIVVNTFEELEAEYVKEYTRT-KDKAERCR-------GENGSTVDDYEQCLKWLDS 55
+ A+GI+VNTF ELE +K DK G+ + + +CLKWLD+
Sbjct: 205 KEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDN 264
Query: 56 WEPGSVIYPCLGRICGLATWQXXXXXXXXXXXXQPFIWLIRG----------GERSQGLE 105
GSV+Y G L Q Q F+W+IR SQ
Sbjct: 265 QPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDP 324
Query: 106 KWIQEEGFEERTKERGFIIWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYP 165
GF ERTK+RGF+I WAPQ +L+H + GGFLTHCGWNSTLE V +G+PL+ +P
Sbjct: 325 LTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP 384
Query: 166 LFAEQFYNKKLAAQVLGIGVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKLMDRGKQGE 225
L+AEQ N L +S I A + D+ GLV +RE+V ++ LM+ G++G+
Sbjct: 385 LYAEQKMNAVL--------LSEDIRAALRPRAGDD-GLV-RREEVARVVKGLME-GEEGK 433
Query: 226 KRRKRARQLGEIANRAI 242
R + ++L E A R +
Sbjct: 434 GVRNKMKELKEAACRVL 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 27/243 (11%)
Query: 6 ADGIVVNTFEELEAEYVKEYTRTKDKAERCRGE-----NGSTVDDYEQCLKWLDSWEPGS 60
A + +N+FEEL+ + ++K K G V + CL+WL +P S
Sbjct: 214 ATAVFINSFEELDDSLTNDL-KSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTS 272
Query: 61 VIYPCLGRICGLATWQXXXXXXXXXXXXQPFIWLIRGGERSQGLEKWIQEEGFEERTKER 120
V+Y G + + PFIW +R R EGF E+T+
Sbjct: 273 VVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH------LPEGFLEKTRGY 326
Query: 121 GFIIWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQV 180
G ++ WAPQ +L+H A+G F+THCGWNS E V+ GVPL+ P F +Q N ++ V
Sbjct: 327 GMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV 385
Query: 181 LGIGVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANR 240
L IGV + G V + + ++++ + K G+K R+ R L E A+R
Sbjct: 386 LEIGVRI-------------EGGVFTKSGLMSCFDQILSQEK-GKKLRENLRALRETADR 431
Query: 241 AIG 243
A+G
Sbjct: 432 AVG 434
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 115/242 (47%), Gaps = 27/242 (11%)
Query: 6 ADGIVVNTFEELEAEYVKEYTRTKDKAERCRGENGST-----VDDYEQCLKWLDSWEPGS 60
A+ + +N+F + ++ +K K G T V D CL+WLD E S
Sbjct: 216 ANAVAINSFATIHP-LIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSS 274
Query: 61 VIYPCLGRICGLATWQXXXXXXXXXXXXQPFIWLIRGGERSQGLEKWIQEEGFEERTKER 120
V+Y G + + PFIW RG + + +GF ERTK +
Sbjct: 275 VVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEK------LPKGFLERTKTK 328
Query: 121 GFIIWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQV 180
G I+ WAPQV +L H ++G FLTH GWNS LE + GVP+++ P F +Q N L V
Sbjct: 329 GKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESV 387
Query: 181 LGIGVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANR 240
L IGV V DN V+ +E +K+A+E M K G R+K + L E A +
Sbjct: 388 LEIGVGV-----------DNG--VLTKESIKKALELTMSSEKGGIMRQKIVK-LKESAFK 433
Query: 241 AI 242
A+
Sbjct: 434 AV 435
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 34/246 (13%)
Query: 9 IVVNTFEELEAEYVKEYTRT----------------KDKAERCRGENGSTVDDYEQCLKW 52
I++NTF ELE++ + + T + + + + + +CL W
Sbjct: 229 ILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDW 288
Query: 53 LDSWEPGSVIYPCLGRICGLATWQXXXXXXXXXXXXQPFIWLIRGGERSQGLEKWIQEEG 112
L+S EPGSV+Y G + Q + F+W+IR G I
Sbjct: 289 LESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGG--SVIFSSE 346
Query: 113 FEERTKERGFIIWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFY 172
F +RG +I W PQ +L+H +IGGFLTHCGWNST E + AGVP++ +P FA+Q
Sbjct: 347 FTNEIADRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPT 405
Query: 173 NKKLAAQVLGIGVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKLMDRGKQGEKRRKRAR 232
+ + IG+ + +KRE++ + I +++ G +G+K +++A
Sbjct: 406 DCRFICNEWEIGMEIDTN--------------VKREELAKLINEVI-AGDKGKKMKQKAM 450
Query: 233 QLGEIA 238
+L + A
Sbjct: 451 ELKKKA 456
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 8 GIVVNTFEELEAEYVKEYTRTKDKAE---------RCRGENGSTVDD--YEQCLKWLDSW 56
GI+VNTF +LE + +K +G+ +D ++ LKWLD
Sbjct: 214 GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQ 273
Query: 57 EPGSVIYPCLGRI-CGLATWQXXXXXXXXXXXXQPFIWLIRGGERSQGLEKWIQEEGFEE 115
SV++ C G + Q F+W S EK + EGF E
Sbjct: 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLE 326
Query: 116 RTKERGF-IIWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNK 174
+ G +I GWAPQV +L+H+AIGGF++HCGWNS LE + GVP++T+P++AEQ N
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 175 KLAAQVLGIGVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 234
+ G+G +G+ G + V+ E++++ ++ LMD+ K+ + +++
Sbjct: 387 FRLVKEWGVG--LGLRVDYRKGSD-----VVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM 439
Query: 235 GEIA 238
A
Sbjct: 440 SRNA 443
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 8 GIVVNTFEELEAEYVKEYTRTKDKAE---------RCRGENGSTVDD--YEQCLKWLDSW 56
GI+VNTF +LE + +K +G+ +D ++ LKWLD
Sbjct: 214 GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQ 273
Query: 57 EPGSVIYPCLGRI-CGLATWQXXXXXXXXXXXXQPFIWLIRGGERSQGLEKWIQEEGFEE 115
SV++ C G + Q F+W S EK + EGF E
Sbjct: 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLE 326
Query: 116 RTKERGF-IIWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNK 174
+ G +I GWAPQV +L+H+AIGGF++HCGWNS LE + GVP++T+P++AEQ N
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 175 KLAAQVLGIGVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 234
+ G+G +G+ G + V+ E++++ ++ LMD+ K+ + +++
Sbjct: 387 FRLVKEWGVG--LGLRVDYRKGSD-----VVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM 439
Query: 235 GEIA 238
A
Sbjct: 440 SRNA 443
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 124 IWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQVLGI 183
++ W PQ LL H F+TH G N E + G+P V PLFA+Q N + G
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIA-HXKARGA 130
Query: 184 GVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKL 217
V V + L + VI KE + KL
Sbjct: 131 AVRVDFNTXSSTDLLNALKRVINDPSYKENVXKL 164
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 127 WAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQVLGIG 184
W PQ+ +L+ + F+TH G ST+E +S VP+V P AEQ N + + LG+G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLG 366
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 124 IWGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQVLGI 183
+ W PQ+ +L R F+TH G + EG++ P++ P +QF N + Q LG+
Sbjct: 287 VHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM-LQGLGV 343
Query: 184 GVSVGIEATVTWGLEDNSGLVIKREKVKEAIEKL-MDRGKQGEKRR 228
+ E L + + ++ +V + ++ + ++G RR
Sbjct: 344 ARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRR 389
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 127 WAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQF 171
W PQ LL H + + H G +TL + AGVP +++P + F
Sbjct: 299 WVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 127 WAPQVLLLSH-RAIGGFLTHCGWNSTLEGVSAGVPLVTYPLFAEQ 170
W P +L+H RA LTH + LE +AGVPLV P FA +
Sbjct: 288 WIPFHSVLAHARAC---LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3LLL|A Chain A, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
pdb|3LLL|B Chain B, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
Length = 287
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 27 RTKDKAERCRGENGSTVDDYEQCLKWLDSWEP 58
+ +DK E+C+ + T D YE+ LK LD P
Sbjct: 174 KLQDKIEKCKQDVLKTKDKYEKSLKELDQTTP 205
>pdb|4EOG|A Chain A, Crystal Structure Of Csx1 Of Pyrococcus Furiosus
Length = 480
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 148 WNSTLEGVSAGVPLV---TYPLF--AEQFYNKKLAAQVLGIGV 185
WN+ + V+ G PLV YP E + NKKL ++GI V
Sbjct: 242 WNAFISSVANGFPLVFASFYPNIRDVEDYLNKKLEEFLVGIEV 284
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 145 HCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQVLGIGVSV 187
H G +TL +S GVP V+ P+ AE + + +L G GV V
Sbjct: 306 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL-LHAAGAGVEV 347
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 145 HCGWNSTLEGVSAGVPLVTYPLFAEQFYNKKLAAQVLGIGVSV 187
H G +TL +S GVP V+ P+ AE + + +L G GV V
Sbjct: 307 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL-LHAAGAGVEV 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,742,800
Number of Sequences: 62578
Number of extensions: 314020
Number of successful extensions: 879
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 24
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)