BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046885
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
          Cys2his2 Zinc Finger Induces Structural Rearrangements
          Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
          From Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 25/28 (89%), Positives = 28/28 (100%)

Query: 50 WPPRSYSCSFCRREFKSAQALGGHMNVH 77
          WPPRSY+CSFC+REF+SAQALGGHMNVH
Sbjct: 2  WPPRSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
          Length = 1196

 Score = 30.4 bits (67), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 52  PRSYSCSFCRREFKSAQALGGHMNVHRRDRA 82
           P SY C+ C   F +  AL  H+    RD A
Sbjct: 96  PSSYVCNVCNARFSTMSALSEHLRSDHRDDA 126


>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
 pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
          Length = 1214

 Score = 30.4 bits (67), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 52  PRSYSCSFCRREFKSAQALGGHMNVHRRDRA 82
           P SY C+ C   F +  AL  H+    RD A
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDDA 144


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 53 RSYSCSFCRREFKSAQALGGHMNVH 77
          R Y C  C ++FK    L GHM +H
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIH 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.127    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,950,093
Number of Sequences: 62578
Number of extensions: 142203
Number of successful extensions: 360
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 11
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)