BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046887
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 6/104 (5%)
Query: 27 VYKVGDDAGWS--IPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCN 84
V+KVGD GW+ +P +Y WA + FHVGD L F YN+ FH+VL+V ++ ++SCN
Sbjct: 4 VHKVGDSTGWTTLVP----YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN 59
Query: 85 TQSPMKSYTTGKDSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128
+ SP SYT+G DSI L+ YF+CG PGHCQ+G K+EI+ +
Sbjct: 60 SSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 26 AVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNT 85
AVY VG GW+ N +W + F GDIL F YN H+V+ V++ + +CNT
Sbjct: 1 AVYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54
Query: 86 QSPMKSYTTGKDSITLESSDPRYFICGAPGHCQMGMKLEI 125
+ K YT+G+D I L YFIC PGHCQ GMK+ +
Sbjct: 55 PAGAKVYTSGRDQIKLPKGQ-SYFICNFPGHCQSGMKIAV 93
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 28 YKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQS 87
Y VG D W P+ Y WA F VGD L F++ + H V V++DA+++C ++
Sbjct: 4 YDVGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62
Query: 88 PMKSYTTGKDSITLESSDPRYFICGAPGHCQMGMKLEI 125
P+ TT I L ++ P+Y+IC HC++G KL I
Sbjct: 63 PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSI 100
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 26 AVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNT 85
AVY +G WS N N A F GD+L F+Y H+V+ V+ Y SC+
Sbjct: 1 AVYNIG----WSF------NVNG-ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSA 49
Query: 86 QSPMKSYTTGKDSITLESSDPRYFICGAPGHCQMGMKLEI 125
++Y++G+D I L + YFIC PGHC GMK+ I
Sbjct: 50 PRGARTYSSGQDRIKL-TRGQNYFICSFPGHCGGGMKIAI 88
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 27 VYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEV-SRDAYESCN- 84
V+ VGD+ GWS+P++ + Y+ WA F VGD L F + + H+V E+ ++ ++++CN
Sbjct: 5 VHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF 63
Query: 85 TQSPMKSYTTGKDSITLESSDPRYFICGAPGHCQMGMKLEI 125
S T L+ YF+C HC G KL I
Sbjct: 64 VNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSI 104
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
pdb|2GV9|B Chain B, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
Length = 1193
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 55 FHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSY-TTGKDSITLESSDPRYFICGA 113
FHV ++ F++ SL+ S+++ + + + ++ ++ GKD + +E R F A
Sbjct: 666 FHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKA 725
Query: 114 PGHCQ-----------MGMKLEIRTNGAGNSP 134
H + + M+ +IR+ +SP
Sbjct: 726 --HVRESLLSILLRDWLAMRKQIRSRIPQSSP 755
>pdb|3EPN|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPN|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPO|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
pdb|3EPO|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
Length = 612
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 110 ICGAPGHCQMGMKLEIRTNGAGNSPNVPTRPMLQLS 145
+CG P C M + E+R AG +PN M ++S
Sbjct: 563 MCG-PKFCSMKISQEVRDFAAGKAPNSAELGMAEMS 597
>pdb|4ELC|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134 MUTANT WITH MTSEA MODIFIED CYS-165
Length = 445
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 59 DILSFEYNSLFHSVLEVSRDAYESC 83
DI+ FE S H VL ++R+ Y S
Sbjct: 179 DIIQFEXKSFGHEVLNLTRNGYGST 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,210,915
Number of Sequences: 62578
Number of extensions: 206746
Number of successful extensions: 418
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 19
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)