Query 046887
Match_columns 169
No_of_seqs 139 out of 900
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 5.9E-45 2E-49 281.1 6.9 112 24-136 2-115 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 2E-42 6.9E-47 257.3 7.6 106 24-131 1-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 8.5E-42 2.9E-46 256.5 7.7 106 26-132 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 1E-39 3.6E-44 237.6 6.6 96 26-128 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.6E-35 5.5E-40 213.6 7.7 91 26-128 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 9.9E-12 3.4E-16 93.5 8.4 95 24-128 15-139 (140)
7 2cal_A Rusticyanin; iron respi 99.1 5.7E-11 2E-15 91.9 5.6 76 52-128 62-154 (154)
8 1bxv_A Plastocyanin; copper pr 99.1 1.2E-10 3.9E-15 80.7 6.4 85 27-128 4-91 (91)
9 1iuz_A Plastocyanin; electron 98.9 3.9E-09 1.3E-13 74.7 6.6 91 26-128 2-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.9 1.7E-08 5.7E-13 75.7 10.0 94 24-128 17-139 (139)
11 1plc_A Plastocyanin; electron 98.8 1.1E-08 3.7E-13 72.1 6.8 90 27-128 2-99 (99)
12 2gim_A Plastocyanin; beta shee 98.8 1E-08 3.5E-13 72.9 6.3 90 27-128 5-105 (106)
13 1pmy_A Pseudoazurin; electron 98.8 1.3E-08 4.4E-13 76.0 7.0 71 52-130 22-95 (123)
14 1paz_A Pseudoazurin precursor; 98.8 1.7E-08 5.9E-13 75.3 7.1 71 52-130 22-95 (123)
15 2plt_A Plastocyanin; electron 98.7 1.9E-08 6.6E-13 70.5 6.1 91 26-128 2-98 (98)
16 1kdj_A Plastocyanin; electron 98.7 4.8E-08 1.6E-12 69.0 7.2 90 27-128 2-102 (102)
17 1byp_A Protein (plastocyanin); 98.7 4.6E-08 1.6E-12 68.8 6.6 75 52-128 18-99 (99)
18 3tu6_A Pseudoazurin (blue copp 98.7 4.1E-08 1.4E-12 73.9 6.5 72 51-130 23-97 (127)
19 1b3i_A PETE protein, protein ( 98.6 8.9E-08 3.1E-12 67.0 7.6 73 52-128 20-97 (97)
20 3erx_A Pseudoazurin; copper pr 98.6 8.5E-08 2.9E-12 71.7 7.0 71 51-129 21-94 (123)
21 3ef4_A Pseudoazurin, blue copp 98.6 8.1E-08 2.8E-12 72.1 6.7 73 51-130 22-96 (124)
22 1pcs_A Plastocyanin; electron 98.5 1.4E-07 4.8E-12 66.1 5.5 90 27-128 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.1 2.7E-06 9.2E-11 63.7 5.3 71 51-128 60-132 (132)
24 4hci_A Cupredoxin 1; structura 98.0 2.8E-06 9.6E-11 60.0 3.3 67 51-128 28-100 (100)
25 3ay2_A Lipid modified azurin p 97.9 1.1E-05 3.8E-10 63.3 5.7 92 26-128 43-166 (167)
26 3cvb_A Plastocyanin; cupredoxi 97.9 3.4E-05 1.2E-09 54.0 7.7 88 27-128 4-104 (105)
27 1cuo_A Protein (azurin ISO-2); 97.9 5.5E-05 1.9E-09 56.7 9.0 91 27-128 4-128 (129)
28 2ux6_A Pseudoazurin; type-1 co 97.8 2.8E-05 9.7E-10 57.5 5.8 69 52-130 22-93 (122)
29 1iko_P Ephrin-B2; greek KEY, g 97.8 2.2E-05 7.5E-10 62.4 5.0 80 54-133 25-144 (178)
30 1id2_A Amicyanin; beta barrel, 97.7 8.8E-05 3E-09 53.0 6.5 69 52-128 35-106 (106)
31 2ov0_A Amicyanin; beta-sandwic 97.6 9.9E-05 3.4E-09 52.5 6.1 83 24-128 17-105 (105)
32 1nwp_A Azurin; electron transp 97.6 0.00012 4.1E-09 54.8 6.5 91 27-128 4-128 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.6 0.00042 1.4E-08 51.9 8.7 91 27-128 4-128 (129)
34 2iaa_C Azurin; quinoprotein, t 97.5 0.00049 1.7E-08 51.5 8.7 90 28-128 4-127 (128)
35 3czu_B Ephrin-A1; ATP-binding, 97.3 0.00059 2E-08 54.3 7.4 102 20-131 24-162 (182)
36 2x11_B Ephrin-A5; receptor-sig 97.2 0.00096 3.3E-08 52.9 7.1 77 53-132 52-165 (177)
37 3d12_B Ephrin-B3; beta propell 96.8 0.0013 4.5E-08 50.3 4.9 75 54-128 23-140 (141)
38 1shx_A Ephrin-A5; ephrin signa 96.8 0.0038 1.3E-07 47.6 7.3 76 53-131 23-135 (138)
39 2vsm_B Ephrin-B2; developmenta 96.7 0.0024 8.4E-08 48.7 5.7 76 54-129 24-139 (140)
40 1iby_A Nitrosocyanin; RED copp 96.3 0.0046 1.6E-07 43.9 4.4 66 52-128 39-111 (112)
41 2cua_A Protein (CUA); CUA cent 96.1 0.019 6.5E-07 43.0 7.3 66 52-128 61-134 (135)
42 2dv6_A Nitrite reductase; elec 94.4 0.043 1.5E-06 47.5 5.0 74 51-131 55-134 (447)
43 2wo3_B Ephrin-A2; transferase- 94.1 0.077 2.6E-06 41.1 5.4 76 53-131 32-145 (157)
44 3fsa_A Azurin; copper, cupredo 93.8 0.37 1.3E-05 35.8 8.4 72 53-128 20-125 (125)
45 1fwx_A Nitrous oxide reductase 92.5 0.14 4.8E-06 47.1 5.3 68 52-130 514-593 (595)
46 3hei_B Ephrin-A1; EPH receptor 91.9 0.25 8.5E-06 37.2 5.1 73 53-128 22-131 (132)
47 3s8f_B Cytochrome C oxidase su 91.7 0.42 1.4E-05 37.1 6.4 67 52-128 94-167 (168)
48 3sbq_A Nitrous-oxide reductase 91.2 0.37 1.3E-05 44.6 6.5 67 52-129 559-637 (638)
49 1mzy_A Copper-containing nitri 80.4 2.7 9.1E-05 34.8 5.6 75 53-130 66-153 (333)
50 1oe1_A Dissimilatory copper-co 78.2 3.5 0.00012 34.1 5.6 76 53-131 67-154 (336)
51 1kbv_A ANIA, major outer membr 73.8 4 0.00014 33.9 4.8 76 52-130 71-157 (327)
52 2zoo_A Probable nitrite reduct 72.6 2.7 9.2E-05 36.1 3.6 77 52-131 61-148 (442)
53 1yel_A AT1G16640; CESG, protei 65.3 1.4 4.9E-05 30.7 0.2 21 48-68 71-91 (104)
54 1oe1_A Dissimilatory copper-co 65.0 6.7 0.00023 32.4 4.3 35 98-132 286-321 (336)
55 2bw4_A Copper-containing nitri 64.8 9.8 0.00033 31.4 5.3 75 53-130 73-159 (340)
56 4i1k_A B3 domain-containing tr 64.5 1.7 5.7E-05 32.7 0.5 28 48-75 110-137 (146)
57 3iuw_A Activating signal coint 60.6 4 0.00014 28.2 1.8 16 53-68 36-52 (83)
58 3gdc_A Multicopper oxidase; be 54.6 20 0.00068 29.0 5.4 78 53-131 68-156 (288)
59 1mzy_A Copper-containing nitri 48.8 9.8 0.00034 31.3 2.7 33 98-130 286-319 (333)
60 3gdc_A Multicopper oxidase; be 45.1 8.1 0.00028 31.4 1.6 32 98-129 257-288 (288)
61 3l6w_A Hemocyanin 1; cupredoxi 43.0 18 0.0006 32.6 3.5 74 53-128 413-491 (491)
62 1sdd_A Coagulation factor V; c 42.2 3.5 0.00012 33.9 -1.1 33 98-130 269-301 (306)
63 1cyx_A CYOA; electron transpor 42.1 18 0.00062 28.8 3.1 29 98-128 84-115 (205)
64 2zwn_A Two-domain type laccase 42.1 26 0.00089 29.0 4.3 79 54-132 38-129 (339)
65 3hb3_B Cytochrome C oxidase su 41.6 18 0.00063 30.3 3.2 31 98-130 232-265 (298)
66 2hzs_I RNA polymerase II media 40.0 0.63 2.1E-05 25.2 -3.9 19 52-70 4-22 (27)
67 2gsm_B Cytochrome C oxidase su 39.5 21 0.00071 29.2 3.2 30 98-129 214-246 (262)
68 1v54_B Cytochrome C oxidase po 37.1 20 0.00067 28.7 2.6 30 98-129 183-215 (227)
69 2z0t_A Putative uncharacterize 36.1 17 0.0006 26.0 1.9 11 53-63 32-42 (109)
70 2q9o_A Laccase-1; multicopper 34.6 52 0.0018 29.3 5.2 76 53-130 69-158 (559)
71 1kbv_A ANIA, major outer membr 34.2 25 0.00086 28.9 2.9 33 98-130 275-308 (327)
72 3g5w_A Multicopper oxidase typ 30.6 42 0.0014 27.6 3.7 79 54-132 37-128 (318)
73 1aoz_A Ascorbate oxidase; oxid 30.1 81 0.0028 27.8 5.7 78 52-131 35-125 (552)
74 1fft_B Ubiquinol oxidase; elec 29.4 28 0.00096 29.3 2.4 64 53-128 153-225 (315)
75 1v10_A Laccase; multicopper bl 29.2 75 0.0025 27.9 5.3 34 98-131 117-151 (521)
76 2qcp_X Cation efflux system pr 28.7 38 0.0013 22.6 2.6 16 52-67 51-66 (80)
77 2vb2_X Copper protein, cation 28.6 38 0.0013 23.0 2.6 20 48-67 55-74 (88)
78 1xne_A Hypothetical protein PF 28.6 12 0.00042 27.0 0.0 12 53-64 33-44 (113)
79 2k75_A Uncharacterized protein 28.3 23 0.00078 24.7 1.5 29 27-64 41-69 (106)
80 2j5w_A Ceruloplasmin, ferroxid 27.9 42 0.0014 32.5 3.6 75 52-130 633-718 (1065)
81 3sqr_A Laccase; multicopper ox 27.6 85 0.0029 28.3 5.5 33 98-130 156-188 (580)
82 1zpu_A Iron transport multicop 27.5 91 0.0031 27.5 5.6 77 53-131 36-126 (534)
83 3t6v_A Laccase; beta barrel, o 27.3 84 0.0029 27.6 5.3 77 53-131 37-131 (495)
84 4he6_A Peptidase family U32; u 26.9 39 0.0013 22.5 2.4 18 51-68 26-43 (89)
85 2l8d_A Lamin-B receptor; DNA b 26.6 68 0.0023 21.1 3.4 45 52-101 7-53 (66)
86 2zoo_A Probable nitrite reduct 26.5 43 0.0015 28.4 3.2 35 98-132 265-300 (442)
87 4dny_A Metalloprotease STCE; m 26.0 22 0.00074 26.4 1.0 20 57-76 77-96 (126)
88 3pxl_A Laccase; 4-copper prote 25.9 93 0.0032 27.4 5.3 77 53-131 36-130 (499)
89 1sdd_B Coagulation factor V; c 25.5 35 0.0012 30.8 2.5 32 98-129 296-327 (647)
90 1w0n_A Endo-1,4-beta-xylanase 25.4 1E+02 0.0034 22.8 4.5 65 56-133 41-119 (131)
91 2bw4_A Copper-containing nitri 24.6 71 0.0024 26.1 4.0 34 98-131 292-326 (340)
92 3kw8_A Laccase, putative coppe 24.5 48 0.0016 26.5 2.9 29 103-131 239-267 (276)
93 2kbn_A Conserved protein; nucl 23.2 58 0.002 22.6 2.8 32 26-64 37-70 (109)
94 2laa_A Beta/alpha-amylase; SBD 23.2 42 0.0015 23.7 2.1 35 34-68 27-65 (104)
95 2dig_A Lamin-B receptor; tudor 23.1 91 0.0031 20.6 3.5 46 52-102 10-57 (68)
96 2y7l_A NT_ALS9-2, agglutinin-l 23.0 28 0.00095 29.5 1.2 34 53-86 43-83 (312)
97 2uxt_A Protein SUFI, SUFI; oxi 22.6 56 0.0019 28.1 3.2 73 53-130 52-139 (451)
98 2l55_A SILB,silver efflux prot 22.4 42 0.0014 22.5 1.8 20 48-67 41-60 (82)
99 2j5w_A Ceruloplasmin, ferroxid 21.7 57 0.002 31.5 3.3 77 52-133 272-360 (1065)
100 1wid_A DNA-binding protein RAV 20.6 39 0.0013 24.4 1.4 20 48-67 85-104 (130)
101 2z0b_A GDE5, KIAA1434, putativ 20.3 35 0.0012 24.6 1.2 42 25-66 23-74 (131)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=5.9e-45 Score=281.10 Aligned_cols=112 Identities=29% Similarity=0.596 Sum_probs=101.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCCcceEEEE-ccccCccccCCCCCcccccCCcEEEe-
Q 046887 24 FGAVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEV-SRDAYESCNTQSPMKSYTTGKDSITL- 101 (169)
Q Consensus 24 ~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~Y~~C~~s~~~~~~~~G~~~v~L- 101 (169)
+|++|+|||+.||++++. ..||++||++++|+|||+|+|+|.+++|+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~ 80 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL 80 (138)
T ss_dssp CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred CceEEEECCcCcCcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence 578999999999999742 478999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCceEEEcCCCCcCCCCCEEEEEecCCCCCCCC
Q 046887 102 ESSDPRYFICGAPGHCQMGMKLEIRTNGAGNSPNV 136 (169)
Q Consensus 102 ~~~G~~YFicg~~~HC~~GmKl~I~V~~~~~~~~~ 136 (169)
+++|++||||++++||++||||+|+|....+++++
T Consensus 81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~ 115 (138)
T 1jer_A 81 DELGMHYFVCTVGTHCSNGQKLSINVVAANATVSM 115 (138)
T ss_dssp CSSEEEEEECCSTTTGGGTCEEEEEEECCC-----
T ss_pred cCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCC
Confidence 99999999999999999999999999988665333
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=2e-42 Score=257.28 Aligned_cols=106 Identities=47% Similarity=0.954 Sum_probs=99.5
Q ss_pred cceEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccccCCcEEEecC
Q 046887 24 FGAVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYTTGKDSITLES 103 (169)
Q Consensus 24 ~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~~v~L~~ 103 (169)
.|++|+|||+.||++++ +.||++||++++|++||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+|++
T Consensus 1 ~a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~ 78 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKR 78 (109)
T ss_dssp CCCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCS
T ss_pred CCcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECC
Confidence 47899999999999973 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEcCCCCcCCCCCEEEEEecCCC
Q 046887 104 SDPRYFICGAPGHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 104 ~G~~YFicg~~~HC~~GmKl~I~V~~~~ 131 (169)
+|++||||++++||++||||+|+|.+..
T Consensus 79 ~G~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 79 PGTFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp SEEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred CcCEEEECCCCCcccCCCEEEEEEcCCC
Confidence 9999999999999999999999998764
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=8.5e-42 Score=256.48 Aligned_cols=106 Identities=35% Similarity=0.747 Sum_probs=97.5
Q ss_pred eEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccccCCcEEEecCCC
Q 046887 26 AVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYTTGKDSITLESSD 105 (169)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~~v~L~~~G 105 (169)
++|+|||+.||+++ ....+|++||++++|++||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+|+++|
T Consensus 2 ~~~~VG~~~GW~~~-~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G 80 (116)
T 1x9u_A 2 EDYDVGGDMEWKRP-SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG 80 (116)
T ss_dssp CEEETTGGGCSSCC-SSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred eEEEECCcCcCcCC-CCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence 57999999999986 23578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCcCCCCCEEEE-EecCCCC
Q 046887 106 PRYFICGAPGHCQMGMKLEI-RTNGAGN 132 (169)
Q Consensus 106 ~~YFicg~~~HC~~GmKl~I-~V~~~~~ 132 (169)
++||||++++||++||||+| +|.++++
T Consensus 81 ~~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 81 PQYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred CEEEECCCCCccccCCEEEEEEECCCCC
Confidence 99999999999999999999 7876543
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1e-39 Score=237.57 Aligned_cols=96 Identities=44% Similarity=0.916 Sum_probs=92.0
Q ss_pred eEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccccCCcEEEecCCC
Q 046887 26 AVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYTTGKDSITLESSD 105 (169)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~~v~L~~~G 105 (169)
++|+|||+.||++ +|++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+| ++|
T Consensus 1 ~~~~VG~~~GW~~------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g 73 (96)
T 2cbp_A 1 AVYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKG 73 (96)
T ss_dssp CEEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSE
T ss_pred CEEEECCcCCCcc------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCC
Confidence 4799999999996 399999999999999999999999999999999999999999999999999999999 899
Q ss_pred ceEEEcCCCCcCCCCCEEEEEec
Q 046887 106 PRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 106 ~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
++||||++++||++||||+|+|+
T Consensus 74 ~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 74 QSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEECCSTTTGGGTCEEEEEEC
T ss_pred CEEEEcCCCCccccCCEEEEEEC
Confidence 99999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.6e-35 Score=213.63 Aligned_cols=91 Identities=40% Similarity=0.794 Sum_probs=86.1
Q ss_pred eEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccccCCcEEEecCCC
Q 046887 26 AVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYTTGKDSITLESSD 105 (169)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~~v~L~~~G 105 (169)
++|+| ||+++ ++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+ +|
T Consensus 1 ~~y~V----gW~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g 68 (91)
T 1f56_A 1 AVYNI----GWSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RG 68 (91)
T ss_dssp CEEEE----ECSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SE
T ss_pred CEEEE----eCCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CC
Confidence 47899 89973 89999999999999999999999999999999999999999999999999999996 89
Q ss_pred ceEEEcCCCCcCCCCCEEEEEec
Q 046887 106 PRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 106 ~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
++||||++++||++||||+|+|.
T Consensus 69 ~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 69 QNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEC
T ss_pred CeEEEcCCCCccccCCEEEEEEC
Confidence 99999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.28 E-value=9.9e-12 Score=93.54 Aligned_cols=95 Identities=14% Similarity=0.289 Sum_probs=65.1
Q ss_pred cceEEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-----CcceEEEEccc-cCccc-------------
Q 046887 24 FGAVYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-----LFHSVLEVSRD-AYESC------------- 83 (169)
Q Consensus 24 ~a~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-----~~hsV~~V~~~-~Y~~C------------- 83 (169)
.+.++.|+-. .+|.+.| +..+++.||++.|.+.+ ..|+++..+.. ++..+
T Consensus 15 ~~~~v~V~~~~~~~~F~P----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQ----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALF 84 (140)
T ss_dssp CSEEEEEEBCSSSSSBSC----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTT
T ss_pred CCEEEEEEEeCCCceEeC----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccc
Confidence 4567777654 3588753 35789999999999875 47999887422 11111
Q ss_pred ----cCCCC---CcccccC---CcEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 84 ----NTQSP---MKSYTTG---KDSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 84 ----~~s~~---~~~~~~G---~~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+..+. ......| ..+|+++++|.|||+|++++||+.|||..|+|.
T Consensus 85 ~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 85 VPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp CCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 00000 0112333 346788899999999999999999999999985
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.12 E-value=5.7e-11 Score=91.91 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=58.5
Q ss_pred CCeeeeccEeEEEEcCC----cceEEEEc-cccCccccCCCCCc-------ccccCC---c--EEEecCCCceEEEcCCC
Q 046887 52 AIDFHVGDILSFEYNSL----FHSVLEVS-RDAYESCNTQSPMK-------SYTTGK---D--SITLESSDPRYFICGAP 114 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~----~hsV~~V~-~~~Y~~C~~s~~~~-------~~~~G~---~--~v~L~~~G~~YFicg~~ 114 (169)
..++++||+|+|++.+. .|++..++ ...|+.|.....+. ....|. . +|++ ++|+|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46889999999999753 69999984 45788886654322 123333 3 4578 999999999999
Q ss_pred CcCCCCCEEEEEec
Q 046887 115 GHCQMGMKLEIRTN 128 (169)
Q Consensus 115 ~HC~~GmKl~I~V~ 128 (169)
+||+.||+..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999883
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.11 E-value=1.2e-10 Score=80.72 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred EEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-CcceEEEEccccCccccCCCCCcccccC-CcEEEecC
Q 046887 27 VYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-LFHSVLEVSRDAYESCNTQSPMKSYTTG-KDSITLES 103 (169)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~s~~~~~~~~G-~~~v~L~~ 103 (169)
+..+|++ .++.+.| +..++++||+|.|.+.. ..|+|.......+. . .......| ..++++++
T Consensus 4 ~v~~~~~~~~~~f~P----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~----~~~~~~~g~~~~~~f~~ 68 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-H----KDLAFSPGETFEATFSE 68 (91)
T ss_dssp EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-E----EEEECSTTCEEEEECCS
T ss_pred EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-c----ccceeCCCCEEEEEeCC
Confidence 4456654 4576653 34689999999999874 68999876533221 0 01123445 35688999
Q ss_pred CCceEEEcCCCCcCCCCCEEEEEec
Q 046887 104 SDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 104 ~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+|.|+|+|. .||..||+..|.|.
T Consensus 69 ~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 69 PGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CEEEEEEeC--CCccCCCEEEEEEC
Confidence 999999999 89999999999984
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.87 E-value=3.9e-09 Score=74.70 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=61.2
Q ss_pred eEEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-CcceEEEEcc---ccCccccCCCCCcccccCC-cEE
Q 046887 26 AVYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-LFHSVLEVSR---DAYESCNTQSPMKSYTTGK-DSI 99 (169)
Q Consensus 26 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~---~~Y~~C~~s~~~~~~~~G~-~~v 99 (169)
.+..+|++ .+..+.| +..++++||+|.|.... ..|+|...+. ++++.+..+........|. .++
T Consensus 2 ~~V~m~~~~~~~~F~P----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~ 71 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVP----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR 71 (98)
T ss_dssp EEEEESCTTSCCSEES----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEEecCCCCcEEeC----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence 34555543 4566653 35689999999999875 4899986642 1233332211111234454 368
Q ss_pred EecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 100 TLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 100 ~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+++++|.|+|+|.. ||+.||+..|.|.
T Consensus 72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 89999999999995 9999999999984
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.86 E-value=1.7e-08 Score=75.74 Aligned_cols=94 Identities=14% Similarity=0.260 Sum_probs=63.6
Q ss_pred cceEEEecC-CCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCC----cceEEEEccc------------------cC
Q 046887 24 FGAVYKVGD-DAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSL----FHSVLEVSRD------------------AY 80 (169)
Q Consensus 24 ~a~~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~----~hsV~~V~~~------------------~Y 80 (169)
...++.||. ..++.+.| +..+++.||++.|.+.+. .|++...... +|
T Consensus 17 ~~~~V~v~~~~~~~~F~p----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 86 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDK----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANY 86 (139)
T ss_dssp CCEEEEEEBCTTSSSBSC----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTT
T ss_pred cCEEEEEEecCCccEEcC----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccc
Confidence 344566742 23566642 346899999999988643 6999887532 46
Q ss_pred ccccCCCC---CcccccCCc-E--EEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 81 ESCNTQSP---MKSYTTGKD-S--ITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 81 ~~C~~s~~---~~~~~~G~~-~--v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
..|...+. ...+..|.+ + |+.+++|.|+|+|.+++||+ ||+-.|.|.
T Consensus 87 ~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 87 LPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred cCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 66653221 112344532 3 44558999999999999999 999999883
No 11
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.80 E-value=1.1e-08 Score=72.13 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=60.2
Q ss_pred EEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCC-cceEEEEccc---cCccccCC--CCCcccccCC-cE
Q 046887 27 VYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSL-FHSVLEVSRD---AYESCNTQ--SPMKSYTTGK-DS 98 (169)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~~---~Y~~C~~s--~~~~~~~~G~-~~ 98 (169)
+..+|++ .+..+.| +..++++||+|.|....+ .|+|...+.. +.+.+... ........|. .+
T Consensus 2 ~v~m~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1plc_A 2 DVLLGADDGSLAFVP----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE 71 (99)
T ss_dssp EEEESCTTCCSCEES----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred EEEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEE
Confidence 3456654 3455542 346899999999988754 8999876432 22222110 1111234443 46
Q ss_pred EEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 99 ITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 99 v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
++++++|.|.|+|. .||+.||+..|+|.
T Consensus 72 ~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 88999999999999 89999999999983
No 12
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.78 E-value=1e-08 Score=72.92 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=59.4
Q ss_pred EEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-CcceEEEEccccCc-----cccCCCCCcccccCC-cE
Q 046887 27 VYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-LFHSVLEVSRDAYE-----SCNTQSPMKSYTTGK-DS 98 (169)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~-----~C~~s~~~~~~~~G~-~~ 98 (169)
+..||.+ .++.+.| +..++++||++.|.+.. ..|++...+....+ .............|. .+
T Consensus 5 ~V~~~~~~~~~~F~P----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~ 74 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTS 74 (106)
T ss_dssp EEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEE
T ss_pred EEEEEecCCcceEcC----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEEE
Confidence 4556643 5677653 34689999999999764 57998865322110 000000011233443 46
Q ss_pred EEe---cCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 99 ITL---ESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 99 v~L---~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+++ +++|.|+|+|. .||+.||+..|.|.
T Consensus 75 ~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 75 TTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 788 88999999999 89999999999985
No 13
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.78 E-value=1.3e-08 Score=76.02 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=52.9
Q ss_pred CCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCccc--ccCC-cEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 52 AIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSY--TTGK-DSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~--~~G~-~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
..++.+||+|.|.+....|+|+... .|...+. ..+ ..|. .+++++++|.|+|+|. .||..||+..|+|.
T Consensus 22 ~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~-~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1pmy_A 22 LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGA-DYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG 93 (123)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTC-CCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence 4689999999999987789998652 1222111 111 2333 4688999999999998 59999999999997
Q ss_pred CC
Q 046887 129 GA 130 (169)
Q Consensus 129 ~~ 130 (169)
..
T Consensus 94 ~~ 95 (123)
T 1pmy_A 94 DK 95 (123)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 14
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.76 E-value=1.7e-08 Score=75.33 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccc--cCC-cEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 52 AIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYT--TGK-DSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~--~G~-~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
..++++||+|.|.+....|+|.... .|...+. ..+. .|. .+++++++|.|+|+|. .||..||+..|+|.
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~-~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1paz_A 22 YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGA-EKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG 93 (123)
T ss_dssp EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTC-CCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCc-cceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence 4689999999999987789997631 2222111 0122 233 4688999999999998 59999999999997
Q ss_pred CC
Q 046887 129 GA 130 (169)
Q Consensus 129 ~~ 130 (169)
..
T Consensus 94 ~~ 95 (123)
T 1paz_A 94 DS 95 (123)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.72 E-value=1.9e-08 Score=70.49 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=60.4
Q ss_pred eEEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCC-cceEEEEccc---cCccccCCCCCcccccCC-cEE
Q 046887 26 AVYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSL-FHSVLEVSRD---AYESCNTQSPMKSYTTGK-DSI 99 (169)
Q Consensus 26 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~~---~Y~~C~~s~~~~~~~~G~-~~v 99 (169)
.+..+|++ .++.+.| +..++++||++.|....+ .|++...+.. +++.+...........|. .++
T Consensus 2 ~~V~m~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~ 71 (98)
T 2plt_A 2 ATVKLGADSGALEFVP----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSV 71 (98)
T ss_dssp EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEEecCCCCceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEE
Confidence 34566644 3466542 346899999999988753 7999865421 222221111011234454 367
Q ss_pred EecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 100 TLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 100 ~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+++++|.|.|+|. .||+.||+-.|.|.
T Consensus 72 tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 72 KLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp ECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 8899999999999 79999999999983
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.68 E-value=4.8e-08 Score=69.01 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-CcceEEEEccccCc----cccCCCCC----cccccCC
Q 046887 27 VYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-LFHSVLEVSRDAYE----SCNTQSPM----KSYTTGK 96 (169)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~----~C~~s~~~----~~~~~G~ 96 (169)
+..||++ .+..+.| +..++++||++.|.... ..|++...+.+.++ .|.....+ .....|.
T Consensus 2 ~V~~g~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~ 71 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP 71 (102)
T ss_dssp EEEESCTTCCCCEES----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence 3456653 3455542 34689999999999765 47999866433321 12111111 1234443
Q ss_pred -cEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 97 -DSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 97 -~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
.+++++++|.|.|+|. .||+.||+..|.|.
T Consensus 72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 4678899999999999 99999999999983
No 17
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.66 E-value=4.6e-08 Score=68.77 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCeeeeccEeEEEEcCC-cceEEEEcc---ccCccccCC--CCCcccccCC-cEEEecCCCceEEEcCCCCcCCCCCEEE
Q 046887 52 AIDFHVGDILSFEYNSL-FHSVLEVSR---DAYESCNTQ--SPMKSYTTGK-DSITLESSDPRYFICGAPGHCQMGMKLE 124 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~-~hsV~~V~~---~~Y~~C~~s--~~~~~~~~G~-~~v~L~~~G~~YFicg~~~HC~~GmKl~ 124 (169)
..++++||+|.|+.... .|++...+. ++++.+... ........|. .+++++++|.|.|+|. .||+.||+..
T Consensus 18 ~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~G~y~~~C~--~H~~~gM~G~ 95 (99)
T 1byp_A 18 DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCA--PHAGAGMVGK 95 (99)
T ss_dssp EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECG--GGTTTTCEEE
T ss_pred EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCCcEEEEEcC--CccccCCEEE
Confidence 46899999999988753 799876642 123332211 0011234453 4688999999999999 8999999999
Q ss_pred EEec
Q 046887 125 IRTN 128 (169)
Q Consensus 125 I~V~ 128 (169)
|.|.
T Consensus 96 i~V~ 99 (99)
T 1byp_A 96 VTVN 99 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 18
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.66 E-value=4.1e-08 Score=73.87 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=53.9
Q ss_pred cCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccc--cC-CcEEEecCCCceEEEcCCCCcCCCCCEEEEEe
Q 046887 51 EAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYT--TG-KDSITLESSDPRYFICGAPGHCQMGMKLEIRT 127 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~--~G-~~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V 127 (169)
+..++++||+|.|.+....|+|...+. +..... ..+. .| ..+++++++|.|+|+|. .||..||+-.|.|
T Consensus 23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~-~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V 94 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGA-ETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVV 94 (127)
T ss_dssp SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTC-CCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEE
Confidence 357999999999999877899986532 111111 1121 23 34789999999999999 6999999999999
Q ss_pred cCC
Q 046887 128 NGA 130 (169)
Q Consensus 128 ~~~ 130 (169)
...
T Consensus 95 ~~~ 97 (127)
T 3tu6_A 95 GEP 97 (127)
T ss_dssp SSC
T ss_pred CcC
Confidence 864
No 19
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.65 E-value=8.9e-08 Score=67.02 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCeeeeccEeEEEEcC-CcceEEEEcccc---CccccCCCCCcccccC-CcEEEecCCCceEEEcCCCCcCCCCCEEEEE
Q 046887 52 AIDFHVGDILSFEYNS-LFHSVLEVSRDA---YESCNTQSPMKSYTTG-KDSITLESSDPRYFICGAPGHCQMGMKLEIR 126 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~-~~hsV~~V~~~~---Y~~C~~s~~~~~~~~G-~~~v~L~~~G~~YFicg~~~HC~~GmKl~I~ 126 (169)
..++++||++.|.+.. ..|++...+... .+.+.... .....| ..+++++++|.|.|+|. .||+.||+..|.
T Consensus 20 ~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~ 95 (97)
T 1b3i_A 20 ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTLGTPGTYSFYCT--PHRGAGMVGTIT 95 (97)
T ss_dssp EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEECCSCSEEEEECS--STTTTTCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEEeCCCeEEEEEcc--ChhhcCCEEEEE
Confidence 4689999999999875 479998764321 11111111 123344 34688899999999999 999999999999
Q ss_pred ec
Q 046887 127 TN 128 (169)
Q Consensus 127 V~ 128 (169)
|.
T Consensus 96 V~ 97 (97)
T 1b3i_A 96 VE 97 (97)
T ss_dssp EC
T ss_pred EC
Confidence 83
No 20
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.61 E-value=8.5e-08 Score=71.71 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=53.5
Q ss_pred cCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCcccc--cC-CcEEEecCCCceEEEcCCCCcCCCCCEEEEEe
Q 046887 51 EAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSYT--TG-KDSITLESSDPRYFICGAPGHCQMGMKLEIRT 127 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~--~G-~~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V 127 (169)
+..++++||++.|.+....|+|...+. +...+ ...+. .| ..+++++++|.|+|+|. .||..||+-.|.|
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g-~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V 92 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEG-VESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQV 92 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTT-CCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCC-ccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEE
Confidence 357999999999999877899986432 21211 11122 23 34788999999999999 8999999999999
Q ss_pred cC
Q 046887 128 NG 129 (169)
Q Consensus 128 ~~ 129 (169)
..
T Consensus 93 ~~ 94 (123)
T 3erx_A 93 GD 94 (123)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 21
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.60 E-value=8.1e-08 Score=72.09 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=54.4
Q ss_pred cCCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCc-ccccCC-cEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 51 EAIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMK-SYTTGK-DSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~-~~~~G~-~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+..++++||++.|.+....|+|...+. +...+... ....|. .+++++++|.|.|+|. .||..||+-.|+|.
T Consensus 22 ~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~ 94 (124)
T 3ef4_A 22 GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVG 94 (124)
T ss_dssp SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEEC
Confidence 357999999999999878999986532 22221110 112333 4789999999999997 79999999999998
Q ss_pred CC
Q 046887 129 GA 130 (169)
Q Consensus 129 ~~ 130 (169)
.+
T Consensus 95 ~p 96 (124)
T 3ef4_A 95 KP 96 (124)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.51 E-value=1.4e-07 Score=66.11 Aligned_cols=90 Identities=13% Similarity=0.213 Sum_probs=58.1
Q ss_pred EEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-CcceEEEEcccc--CccccCCCCCcccccCC-cEEEe
Q 046887 27 VYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-LFHSVLEVSRDA--YESCNTQSPMKSYTTGK-DSITL 101 (169)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~--Y~~C~~s~~~~~~~~G~-~~v~L 101 (169)
+..+|.+ .+..+.| +..++++||++.|.... ..|++...+... -+.............|. .++++
T Consensus 4 ~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf 73 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTF 73 (98)
T ss_dssp EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEEC
T ss_pred EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEc
Confidence 4456643 4566543 34689999999999864 479987653210 00000000011223443 36788
Q ss_pred cCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 102 ESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 102 ~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+++|.|.|+|. .||..||+-.|.|.
T Consensus 74 ~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 74 TEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCCeEEEEEcC--CccccCCeEEEEEC
Confidence 99999999999 79999999999983
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.14 E-value=2.7e-06 Score=63.68 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=47.3
Q ss_pred cCCeeeeccEeEEEEcCC-cceEEEEccccCccccCCCCCcccccCC-cEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 51 EAIDFHVGDILSFEYNSL-FHSVLEVSRDAYESCNTQSPMKSYTTGK-DSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~s~~~~~~~~G~-~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+..++++||++.|..... .|+|...+...- .=.... .....|. .+++++++|.|.|+|.. |. ||+-.|.|.
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 346899999999987643 799876542210 000000 1223343 36788999999999997 76 999999884
No 24
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.03 E-value=2.8e-06 Score=60.04 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=45.9
Q ss_pred cCCeeeeccEeEEEEcCC---cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCCCCcCCCCCEEE
Q 046887 51 EAIDFHVGDILSFEYNSL---FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGAPGHCQMGMKLE 124 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~~HC~~GmKl~ 124 (169)
+..++++||++.|.+.+. .|++..-... . ......|. -.++.+++|.|.|+|. .||..||+-.
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~-~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~ 96 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIKKLG-I--------DVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGK 96 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEGGGT-E--------EEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEecCC-c--------ceeecCCcceeEEEecccCceEEEECc--cccCCCCEEE
Confidence 357999999999987532 4666532111 0 01223333 2456789999999997 6999999999
Q ss_pred EEec
Q 046887 125 IRTN 128 (169)
Q Consensus 125 I~V~ 128 (169)
|.|.
T Consensus 97 i~Ve 100 (100)
T 4hci_A 97 VIVK 100 (100)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 25
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.95 E-value=1.1e-05 Score=63.33 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=59.0
Q ss_pred eEEEecCCCCCCCCCCCCCCchhhccCCee-eeccEeEEEEcC-C-------cceEEEEccccCccc-------------
Q 046887 26 AVYKVGDDAGWSIPNAQSVNYNAWAEAIDF-HVGDILSFEYNS-L-------FHSVLEVSRDAYESC------------- 83 (169)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~-~-------~hsV~~V~~~~Y~~C------------- 83 (169)
.++.|+.+.+..+.+ +..++ +.||++.|.+.+ + .|+++..+..+++.=
T Consensus 43 ~~V~I~~~d~m~F~P----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v 112 (167)
T 3ay2_A 43 CAATVESNDNMQFNT----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYV 112 (167)
T ss_dssp CEEEEEECTTSCBSC----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTS
T ss_pred eEEEEEeCCCceEec----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccc
Confidence 467777666777753 23566 779987777753 2 399887754432210
Q ss_pred --cCCCC---CcccccCCc-EEEec----CCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 84 --NTQSP---MKSYTTGKD-SITLE----SSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 84 --~~s~~---~~~~~~G~~-~v~L~----~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
+-.+. ......|.+ +|+++ ++|+|.|+|.+++|=+ |||-.|+|.
T Consensus 113 ~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 113 KPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 00000 112344543 55554 7899999999999999 999999985
No 26
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.94 E-value=3.4e-05 Score=54.04 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=56.6
Q ss_pred EEEecCC-CCCCCCCCCCCCchhhccCCeeeeccEeEEEEcC-CcceEEEEccccCcccc-------CCCCCcccccCC-
Q 046887 27 VYKVGDD-AGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNS-LFHSVLEVSRDAYESCN-------TQSPMKSYTTGK- 96 (169)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~-------~s~~~~~~~~G~- 96 (169)
+..||.+ .+..+.+ ...+++.||+|.|.... ..|++..-... ..+. ..........|.
T Consensus 4 ~V~~~~~~~~~~f~p----------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~~ 71 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGES 71 (105)
T ss_dssp EEEESCTTCCSCEES----------SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTCE
T ss_pred EEEEeecCCccEEeC----------CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCCe
Confidence 4456643 5566552 24689999999998763 47988764321 1110 000001223443
Q ss_pred cEEEe---cCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 97 DSITL---ESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 97 ~~v~L---~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
.++++ +++|+|+|.|. .|+..||+-.|.|.
T Consensus 72 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 72 YEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 35666 78999999999 79999999999985
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.92 E-value=5.5e-05 Score=56.70 Aligned_cols=91 Identities=11% Similarity=0.204 Sum_probs=57.5
Q ss_pred EEEecCCCCCCCCCCCCCCchhhccCCeeeec-cEeEEEEcC-C-------cceEEEEcccc----------------Cc
Q 046887 27 VYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVG-DILSFEYNS-L-------FHSVLEVSRDA----------------YE 81 (169)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vG-D~LvF~y~~-~-------~hsV~~V~~~~----------------Y~ 81 (169)
+..|+.+.+..+.+ +..+++.| |.+.|.+.+ + .|+++..+..+ |.
T Consensus 4 ~v~i~~~d~m~F~p----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v 73 (129)
T 1cuo_A 4 ETTVTSGDTMTYST----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV 73 (129)
T ss_dssp EEEEEECSSSCCSC----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred EEEEEeCCCceEcc----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence 44555445666653 34688999 977777753 3 39998775442 21
Q ss_pred cccCCCC---CcccccCCc-EEE--ec---CCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 82 SCNTQSP---MKSYTTGKD-SIT--LE---SSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 82 ~C~~s~~---~~~~~~G~~-~v~--L~---~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
.=+-.+. ......|.+ +++ .+ ++|+|+|+|++++|=+ |||-.|.|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 1010110 112345533 344 43 8999999999999999 999999985
No 28
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.82 E-value=2.8e-05 Score=57.55 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=49.7
Q ss_pred CCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCCccc--ccC-CcEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 52 AIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPMKSY--TTG-KDSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~~~~--~~G-~~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
..++++||+|.|......|+|...+. +-..+. ..+ ..| ..+++++++|.|.|+|.. |+. |+-.|.|.
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~-~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~ 91 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGA-EAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG 91 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTC-CCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCc-ceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence 46899999999999866899976531 111111 111 123 246889999999999997 888 99999997
Q ss_pred CC
Q 046887 129 GA 130 (169)
Q Consensus 129 ~~ 130 (169)
..
T Consensus 92 ~~ 93 (122)
T 2ux6_A 92 DA 93 (122)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 29
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.79 E-value=2.2e-05 Score=62.38 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=52.6
Q ss_pred eeeeccEeEEE---EcC------CcceEEEEccccCccccCCCC-Cccc--c--cCCcEEEec-------------CCC-
Q 046887 54 DFHVGDILSFE---YNS------LFHSVLEVSRDAYESCNTQSP-MKSY--T--TGKDSITLE-------------SSD- 105 (169)
Q Consensus 54 ~F~vGD~LvF~---y~~------~~hsV~~V~~~~Y~~C~~s~~-~~~~--~--~G~~~v~L~-------------~~G- 105 (169)
..++||.|-|- |+. ..+.|++|++++|+.|+.... ...+ . .+...|++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34569999876 322 247889999999999988732 1122 1 223333331 266
Q ss_pred ceEEEcCCC-----------CcCCC-CCEEEEEecCCCCC
Q 046887 106 PRYFICGAP-----------GHCQM-GMKLEIRTNGAGNS 133 (169)
Q Consensus 106 ~~YFicg~~-----------~HC~~-GmKl~I~V~~~~~~ 133 (169)
.|||||.-. |+|.. +|||.|.|......
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 799999743 79996 99999999876554
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.69 E-value=8.8e-05 Score=53.04 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCeeeeccEeEEEEcCC-cceEEEEcccc-CccccCCCCCcccccCC-cEEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 52 AIDFHVGDILSFEYNSL-FHSVLEVSRDA-YESCNTQSPMKSYTTGK-DSITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~-~hsV~~V~~~~-Y~~C~~s~~~~~~~~G~-~~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
..++++||+|.|..... .|+|...+... -..-+ . .....|. .+++++++|.|.|+|.. |. ||+-.|.|.
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~--s--~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFR--G--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEE--C--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCCccccc--c--cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 46899999999997643 79987543220 00000 0 1223343 36788999999999997 76 999999883
No 31
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.64 E-value=9.9e-05 Score=52.52 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.6
Q ss_pred cceEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEEEcCC-cceEEEEcccc----CccccCCCCCcccccCC-c
Q 046887 24 FGAVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFEYNSL-FHSVLEVSRDA----YESCNTQSPMKSYTTGK-D 97 (169)
Q Consensus 24 ~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~----Y~~C~~s~~~~~~~~G~-~ 97 (169)
.+.++.|.- .+|.+.| ...++++||+|.|..... .|+|...+..+ ++.. ....|. .
T Consensus 17 ~a~~~~V~~-~~~~F~P----------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~ 78 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYET----------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAY 78 (105)
T ss_dssp CTTCEEEEE-ETTEESS----------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEE
T ss_pred CCcCEEEEE-eecEEcC----------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEE
Confidence 455565543 3566542 346899999999987643 79987543210 2111 123343 3
Q ss_pred EEEecCCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 98 SITLESSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
.++++++|.|+|.|.. |- ||+-.|.|.
T Consensus 79 ~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 79 SLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 6788999999999997 54 999999883
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.62 E-value=0.00012 Score=54.81 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEecCCCCCCCCCCCCCCchhhccCCee-eeccEeEEEEcC-C-------cceEEEEccccCc----------------
Q 046887 27 VYKVGDDAGWSIPNAQSVNYNAWAEAIDF-HVGDILSFEYNS-L-------FHSVLEVSRDAYE---------------- 81 (169)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~-~-------~hsV~~V~~~~Y~---------------- 81 (169)
+..|+.+.+..+.| +..++ +.||++.|.+.+ + .|+++..+.++.+
T Consensus 4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~ 73 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYL 73 (128)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTS
T ss_pred EEEEEeCCCccEec----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccc
Confidence 45565555677753 23566 779988777753 2 3998876543221
Q ss_pred cccCCCC---CcccccCCc-EEEec----CCCc-eEEEcCCCCcCCCCCEEEEEec
Q 046887 82 SCNTQSP---MKSYTTGKD-SITLE----SSDP-RYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 82 ~C~~s~~---~~~~~~G~~-~v~L~----~~G~-~YFicg~~~HC~~GmKl~I~V~ 128 (169)
.=+-.+. ......|.+ +++++ ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 74 KDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred ccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 0000000 012345543 45543 5676 999999999999 999999883
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.56 E-value=0.00042 Score=51.86 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=54.1
Q ss_pred EEEecCCCCCCCCCCCCCCchhhccCCee-eeccEeEEEEcC-C-------cceEEEEcccc----------------Cc
Q 046887 27 VYKVGDDAGWSIPNAQSVNYNAWAEAIDF-HVGDILSFEYNS-L-------FHSVLEVSRDA----------------YE 81 (169)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~-~-------~hsV~~V~~~~----------------Y~ 81 (169)
+..|+.+.+..+.+ +..++ +.||++.|.+.+ + .|+++..+.++ |.
T Consensus 4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T 2ccw_A 4 EATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYV 73 (129)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEeCCCccEec----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccc
Confidence 45555555666653 22344 559987777753 2 39998775442 21
Q ss_pred cccCCCC---CcccccCCc-EEE--ec--CCCc-eEEEcCCCCcCCCCCEEEEEec
Q 046887 82 SCNTQSP---MKSYTTGKD-SIT--LE--SSDP-RYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 82 ~C~~s~~---~~~~~~G~~-~v~--L~--~~G~-~YFicg~~~HC~~GmKl~I~V~ 128 (169)
.=+-.+. ......|.+ +++ .. ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 74 KAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 1010110 112344533 454 44 5665 999999999999 999999985
No 34
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.53 E-value=0.00049 Score=51.47 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=54.2
Q ss_pred EEecCCCCCCCCCCCCCCchhhccCCee-eeccEeEEEEcC-C-------cceEEEEcccc----------------Ccc
Q 046887 28 YKVGDDAGWSIPNAQSVNYNAWAEAIDF-HVGDILSFEYNS-L-------FHSVLEVSRDA----------------YES 82 (169)
Q Consensus 28 ~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~-~-------~hsV~~V~~~~----------------Y~~ 82 (169)
..|+.+.+..+.| +..++ +.||++.|.+.+ + .|+++..+.++ |..
T Consensus 4 v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~ 73 (128)
T 2iaa_C 4 VSIEGNDSMQFNT----------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVK 73 (128)
T ss_dssp EEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSC
T ss_pred EEEEeCCCceEec----------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccc
Confidence 4455555677653 22344 559987777753 3 39988765432 211
Q ss_pred ccCCCC---CcccccCCc-EEEec----CCCc-eEEEcCCCCcCCCCCEEEEEec
Q 046887 83 CNTQSP---MKSYTTGKD-SITLE----SSDP-RYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 83 C~~s~~---~~~~~~G~~-~v~L~----~~G~-~YFicg~~~HC~~GmKl~I~V~ 128 (169)
=+-.+. ......|.+ +++++ ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 74 ~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 74 AGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred cccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 010110 112345533 45554 6785 999999999999 999999985
No 35
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.33 E-value=0.00059 Score=54.31 Aligned_cols=102 Identities=16% Similarity=0.355 Sum_probs=57.1
Q ss_pred hhhccceEEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEE---EcC--------CcceEEEEccccCccccCCC-
Q 046887 20 SRVSFGAVYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFE---YNS--------LFHSVLEVSRDAYESCNTQS- 87 (169)
Q Consensus 20 ~~~a~a~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~---y~~--------~~hsV~~V~~~~Y~~C~~s~- 87 (169)
+..+++..+.| -|+.. |.-+..=--...+++||.|-+- |+. +...+++|++++|++|+...
T Consensus 24 ~~~~sa~rh~V----yWNSs---Np~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~ 96 (182)
T 3czu_B 24 GAMDAADRHTV----FWNSS---NPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSK 96 (182)
T ss_dssp -----CCEEEE----ECSTT---CGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCG
T ss_pred hhhhhccccce----EEcCC---CccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCC
Confidence 33445666765 58754 2212110123477899999775 332 13567899999999998763
Q ss_pred CCccc------c-cCCcEEE--ec-----------CCC-ceEEEcC----CCCcCCCCCEEEEEecCCC
Q 046887 88 PMKSY------T-TGKDSIT--LE-----------SSD-PRYFICG----APGHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 88 ~~~~~------~-~G~~~v~--L~-----------~~G-~~YFicg----~~~HC~~GmKl~I~V~~~~ 131 (169)
+...+ . .|..+|+ +. ++| .||||+. .+|.| |||.|.|....
T Consensus 97 ~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~ 162 (182)
T 3czu_B 97 DQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI 162 (182)
T ss_dssp GGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred CcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence 22111 1 2223332 11 266 6889985 45667 89999998664
No 36
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.18 E-value=0.00096 Score=52.86 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=49.7
Q ss_pred CeeeeccEeEEE---EcC-------CcceEEEEccccCccccCCCCCc-cc------c-cCCcEEEe--c----------
Q 046887 53 IDFHVGDILSFE---YNS-------LFHSVLEVSRDAYESCNTQSPMK-SY------T-TGKDSITL--E---------- 102 (169)
Q Consensus 53 ~~F~vGD~LvF~---y~~-------~~hsV~~V~~~~Y~~C~~s~~~~-~~------~-~G~~~v~L--~---------- 102 (169)
...++||.|-+- |+. +...+++|++++|++|+..+... .+ . .|+.+|++ .
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 468899999775 331 24567899999999998754321 11 1 13333332 1
Q ss_pred -CCC-ceEEEcCC-----CCcCCCCCEEEEEecCCCC
Q 046887 103 -SSD-PRYFICGA-----PGHCQMGMKLEIRTNGAGN 132 (169)
Q Consensus 103 -~~G-~~YFicg~-----~~HC~~GmKl~I~V~~~~~ 132 (169)
++| .||||++- ++-| |||.|.|.....
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 267 68899752 2346 999999987654
No 37
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.83 E-value=0.0013 Score=50.30 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=48.8
Q ss_pred eeeeccEeEEEE---cC---------CcceEEEEccccCccccCCC-CCcccc----cCCcEEEe--c-----------C
Q 046887 54 DFHVGDILSFEY---NS---------LFHSVLEVSRDAYESCNTQS-PMKSYT----TGKDSITL--E-----------S 103 (169)
Q Consensus 54 ~F~vGD~LvF~y---~~---------~~hsV~~V~~~~Y~~C~~s~-~~~~~~----~G~~~v~L--~-----------~ 103 (169)
..++||.|-+-= +. ....+++|++++|++|+... +...+. .+..+|++ . +
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 667889997763 22 24468899999999998862 222221 22222221 0 2
Q ss_pred CC-ceEEEcCC-----------CCcCCC-CCEEEEEec
Q 046887 104 SD-PRYFICGA-----------PGHCQM-GMKLEIRTN 128 (169)
Q Consensus 104 ~G-~~YFicg~-----------~~HC~~-GmKl~I~V~ 128 (169)
+| .||||+.- +|-|.. +|||.|.|.
T Consensus 103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 56 68899852 367986 899999986
No 38
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.82 E-value=0.0038 Score=47.59 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=48.9
Q ss_pred CeeeeccEeEEE---EcC-------CcceEEEEccccCccccCCCCCc-ccc-------cCCcEEEe--c----------
Q 046887 53 IDFHVGDILSFE---YNS-------LFHSVLEVSRDAYESCNTQSPMK-SYT-------TGKDSITL--E---------- 102 (169)
Q Consensus 53 ~~F~vGD~LvF~---y~~-------~~hsV~~V~~~~Y~~C~~s~~~~-~~~-------~G~~~v~L--~---------- 102 (169)
...++||.|-+- |+. +...+++|++++|++|+...... .+. .|..+|++ .
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 467889999775 331 24567899999999998754321 121 13333332 1
Q ss_pred -CCC-ceEEEcCC-----CCcCCCCCEEEEEecCCC
Q 046887 103 -SSD-PRYFICGA-----PGHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 103 -~~G-~~YFicg~-----~~HC~~GmKl~I~V~~~~ 131 (169)
++| .||||++- ++-| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 267 68899742 3457 99999998654
No 39
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.74 E-value=0.0024 Score=48.72 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=49.5
Q ss_pred eeeeccEeEEEEcC---------CcceEEEEccccCccccCCCC-Ccccc----cCCcEEEec-------------CCC-
Q 046887 54 DFHVGDILSFEYNS---------LFHSVLEVSRDAYESCNTQSP-MKSYT----TGKDSITLE-------------SSD- 105 (169)
Q Consensus 54 ~F~vGD~LvF~y~~---------~~hsV~~V~~~~Y~~C~~s~~-~~~~~----~G~~~v~L~-------------~~G- 105 (169)
..++||.|-+-=+. ....+++|++++|+.|+.... ...+. .+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34679999876331 145688999999999988632 22221 233333321 366
Q ss_pred ceEEEcCC-----------CCcCCC-CCEEEEEecC
Q 046887 106 PRYFICGA-----------PGHCQM-GMKLEIRTNG 129 (169)
Q Consensus 106 ~~YFicg~-----------~~HC~~-GmKl~I~V~~ 129 (169)
.||||+.- +|-|.. +|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 68889863 247885 8999999964
No 40
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.27 E-value=0.0046 Score=43.88 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCeeeeccEeEEEEcCC---cceEEEEccccCccccCCCCCcccccCCc-E--EEecCCCceEEEcCCCCcCC-CCCEEE
Q 046887 52 AIDFHVGDILSFEYNSL---FHSVLEVSRDAYESCNTQSPMKSYTTGKD-S--ITLESSDPRYFICGAPGHCQ-MGMKLE 124 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~-~--v~L~~~G~~YFicg~~~HC~-~GmKl~ 124 (169)
..+++.||.+.|.+.+. .|++..-+.. . ......|.+ . |+.+++|.|+|.|.. ||. .+|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~~~------~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDAFG------V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGGGT------E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcCCC------c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 46899999999987632 5776532211 0 112334432 3 445899999999996 664 349999
Q ss_pred EEec
Q 046887 125 IRTN 128 (169)
Q Consensus 125 I~V~ 128 (169)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.10 E-value=0.019 Score=42.96 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCeeeeccEeEEEEcCC--cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCC---CCcCCCCCEE
Q 046887 52 AIDFHVGDILSFEYNSL--FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGA---PGHCQMGMKL 123 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~---~~HC~~GmKl 123 (169)
..++.+||.+.|...+. .|++..-+.. . ......|. ..++.+++|.|+|.|.. .+| .+|+.
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~ip~~~-~--------k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHVEGTN-I--------NVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEETTSS-C--------EEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEecCCC-c--------eeEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCCEE
Confidence 56899999999998643 4665432111 0 01123342 35789999999999986 345 79999
Q ss_pred EEEec
Q 046887 124 EIRTN 128 (169)
Q Consensus 124 ~I~V~ 128 (169)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 42
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=94.42 E-value=0.043 Score=47.51 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=51.3
Q ss_pred cCCeeeeccEeEEEEcCC---cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCCCCcCCCCCEEE
Q 046887 51 EAIDFHVGDILSFEYNSL---FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGAPGHCQMGMKLE 124 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~~HC~~GmKl~ 124 (169)
...+++.||+++|++.+. .|++..-.......|- ...|. ..|+++++|+++|.|.+.+|=..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 457899999999988643 3766432222112232 23332 2566788999999999999988899999
Q ss_pred EEecCCC
Q 046887 125 IRTNGAG 131 (169)
Q Consensus 125 I~V~~~~ 131 (169)
|.|....
T Consensus 128 i~V~~~~ 134 (447)
T 2dv6_A 128 IQVLPGN 134 (447)
T ss_dssp EEEESSC
T ss_pred EEEeCCc
Confidence 9998654
No 43
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.14 E-value=0.077 Score=41.14 Aligned_cols=76 Identities=14% Similarity=0.351 Sum_probs=46.3
Q ss_pred CeeeeccEeEEE---EcC--------CcceEEEEccccCccccCCCCCc-cc------c-cCCcEEE--ec---------
Q 046887 53 IDFHVGDILSFE---YNS--------LFHSVLEVSRDAYESCNTQSPMK-SY------T-TGKDSIT--LE--------- 102 (169)
Q Consensus 53 ~~F~vGD~LvF~---y~~--------~~hsV~~V~~~~Y~~C~~s~~~~-~~------~-~G~~~v~--L~--------- 102 (169)
..+++||.|-+- |+. ....+++|++++|++|+...... .+ . .|..+|+ +.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 467889999876 321 13347899999999998864221 11 1 1232332 11
Q ss_pred --CCC-ceEEEcCC-----CCcCCCCCEEEEEecCCC
Q 046887 103 --SSD-PRYFICGA-----PGHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 103 --~~G-~~YFicg~-----~~HC~~GmKl~I~V~~~~ 131 (169)
++| .||||+.- ++-| |||.|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 256 68899853 3457 47777776554
No 44
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=93.81 E-value=0.37 Score=35.85 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=42.5
Q ss_pred Ceeee-ccEeEEEEcC-C-------cceEEEEccccCccc----------------cCCCCC---cccccCC-cEEEec-
Q 046887 53 IDFHV-GDILSFEYNS-L-------FHSVLEVSRDAYESC----------------NTQSPM---KSYTTGK-DSITLE- 102 (169)
Q Consensus 53 ~~F~v-GD~LvF~y~~-~-------~hsV~~V~~~~Y~~C----------------~~s~~~---~~~~~G~-~~v~L~- 102 (169)
.++.. |+++.|.+.+ | .|+++..+.++.+.= +-.+.+ .....|. .+++++
T Consensus 20 i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf~~ 99 (125)
T 3fsa_A 20 ITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDV 99 (125)
T ss_dssp EEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEEEG
T ss_pred EEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEEeC
Confidence 34433 9999888864 4 399988743322210 001111 1234454 345544
Q ss_pred ----CCCceEEEcCCCCcCCCCCEEEEEec
Q 046887 103 ----SSDPRYFICGAPGHCQMGMKLEIRTN 128 (169)
Q Consensus 103 ----~~G~~YFicg~~~HC~~GmKl~I~V~ 128 (169)
++|.|-|+|+ +|= |||-.|.|.
T Consensus 100 ~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 100 SKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp GGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred cCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 6699999999 886 999999873
No 45
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=92.54 E-value=0.14 Score=47.11 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCeeeeccEeEEEEcCC------cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCC---CCcCCC
Q 046887 52 AIDFHVGDILSFEYNSL------FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGA---PGHCQM 119 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~---~~HC~~ 119 (169)
..++..||++.|...+. .|++..-+.. . . .....|. ..|+.+++|.|||.|.. ..| .
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~g-v-~-------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYG-V-A-------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETTTT-E-E-------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecCCC-c-c-------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 35789999999998652 4666532211 0 0 1223343 25788999999999983 356 4
Q ss_pred CCEEEEEecCC
Q 046887 120 GMKLEIRTNGA 130 (169)
Q Consensus 120 GmKl~I~V~~~ 130 (169)
||+..|.|...
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999754
No 46
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=91.90 E-value=0.25 Score=37.21 Aligned_cols=73 Identities=16% Similarity=0.419 Sum_probs=44.3
Q ss_pred CeeeeccEeEEEEc---C--------CcceEEEEccccCccccCCC-CCccc------c-cCCcEEE--ec---------
Q 046887 53 IDFHVGDILSFEYN---S--------LFHSVLEVSRDAYESCNTQS-PMKSY------T-TGKDSIT--LE--------- 102 (169)
Q Consensus 53 ~~F~vGD~LvF~y~---~--------~~hsV~~V~~~~Y~~C~~s~-~~~~~------~-~G~~~v~--L~--------- 102 (169)
...++||.|-+-=+ . ....+..|++++|++|+..+ +...+ . .|+.+|+ +.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 46788999977432 2 23457899999999998764 22222 1 2333332 21
Q ss_pred --CCC-ceEEEcCC----CCcCCCCCEEEEEec
Q 046887 103 --SSD-PRYFICGA----PGHCQMGMKLEIRTN 128 (169)
Q Consensus 103 --~~G-~~YFicg~----~~HC~~GmKl~I~V~ 128 (169)
++| .||||+.- ++.| +||.|.|.
T Consensus 102 EF~pG~~YY~ISt~~~~~~~~c---l~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEESSCCCCSC---CEEEEEEC
T ss_pred eecCCCcEEEEEccCCCCCCcc---eEEEEEEE
Confidence 266 68888862 2334 68888773
No 47
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=91.71 E-value=0.42 Score=37.08 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=42.2
Q ss_pred CCeeeeccEeEEEEcCC--cceEEEEccccCccccCCCCCc-ccccCC---cEEEecCCCceEEEcCC-CCcCCCCCEEE
Q 046887 52 AIDFHVGDILSFEYNSL--FHSVLEVSRDAYESCNTQSPMK-SYTTGK---DSITLESSDPRYFICGA-PGHCQMGMKLE 124 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~~~~-~~~~G~---~~v~L~~~G~~YFicg~-~~HC~~GmKl~ 124 (169)
...+.+|+.+.|...+. -|+...-+. .++ ....|. ..++.+++|.||+.|.. -|+--.+|+..
T Consensus 94 ~l~VP~G~~Vr~~vTS~DViHsf~IP~l----------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~ 163 (168)
T 3s8f_B 94 PIEVPQGAEIVFKITSPDVIHGFHVEGT----------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT 163 (168)
T ss_dssp SEEEETTSEEEEEEECSSSCEEEEETTS----------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEE
T ss_pred EEEEeCCCeEEEEEecCCceEEEEECCC----------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEE
Confidence 34778888888887642 444432111 111 112343 35788999999999994 34444579999
Q ss_pred EEec
Q 046887 125 IRTN 128 (169)
Q Consensus 125 I~V~ 128 (169)
|.|.
T Consensus 164 V~V~ 167 (168)
T 3s8f_B 164 IVVK 167 (168)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.21 E-value=0.37 Score=44.64 Aligned_cols=67 Identities=10% Similarity=0.235 Sum_probs=44.8
Q ss_pred CCeeeeccEeEEEEcCC------cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCCCCcCCC---
Q 046887 52 AIDFHVGDILSFEYNSL------FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGAPGHCQM--- 119 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~~HC~~--- 119 (169)
..++.+||.+.|...+. .|++..-+.. .......|. ..|+.+++|.|||.|+. +|-.
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPslG---------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs 627 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHG---------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM 627 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETTTT---------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEecCCC---------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence 46889999999987652 5665432211 001123443 25778999999999996 5554
Q ss_pred CCEEEEEecC
Q 046887 120 GMKLEIRTNG 129 (169)
Q Consensus 120 GmKl~I~V~~ 129 (169)
+|+..|.|..
T Consensus 628 ~M~G~ViVEP 637 (638)
T 3sbq_A 628 EMVGRMMVEP 637 (638)
T ss_dssp TCEEEEEEEC
T ss_pred cceEEEEEec
Confidence 4999999864
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=80.44 E-value=2.7 Score=34.85 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=48.3
Q ss_pred CeeeeccEeEEEEcCC-----cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCCCC-----cCCC
Q 046887 53 IDFHVGDILSFEYNSL-----FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGAPG-----HCQM 119 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~~-----HC~~ 119 (169)
.+++.||+|++++.+. -|.+..-...+.+.- .++.....|. ..|+++++|++||-|...+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 5789999999988753 355543221111110 1111234453 2577889999999998764 7778
Q ss_pred CCEEEEEecCC
Q 046887 120 GMKLEIRTNGA 130 (169)
Q Consensus 120 GmKl~I~V~~~ 130 (169)
||.-.+.|...
T Consensus 143 Gl~G~~iV~~~ 153 (333)
T 1mzy_A 143 GMAGCIMVLPR 153 (333)
T ss_dssp TCEEEEEEECT
T ss_pred CCEEEEEEccC
Confidence 99998888754
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=78.16 E-value=3.5 Score=34.08 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=48.1
Q ss_pred CeeeeccEeEEEEcCC-----cceEEEEccccCccccCCCCCcccccCCc---EEEecCCCceEEEcCCCC----cCCCC
Q 046887 53 IDFHVGDILSFEYNSL-----FHSVLEVSRDAYESCNTQSPMKSYTTGKD---SITLESSDPRYFICGAPG----HCQMG 120 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFicg~~~----HC~~G 120 (169)
.+++.||+|++++.+. .|++..-.....+ -..++.....|.+ .|+++++|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 5789999999888653 4555432111000 0011222345532 577789999999999754 56689
Q ss_pred CEEEEEecCCC
Q 046887 121 MKLEIRTNGAG 131 (169)
Q Consensus 121 mKl~I~V~~~~ 131 (169)
|.-.+.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999887543
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=73.77 E-value=4 Score=33.90 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCeeeeccEeEEEEcCC-----cceEEEEccccCccccCCCCCcccccCCc---EEEecCCCceEEEcCCC---CcCCCC
Q 046887 52 AIDFHVGDILSFEYNSL-----FHSVLEVSRDAYESCNTQSPMKSYTTGKD---SITLESSDPRYFICGAP---GHCQMG 120 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFicg~~---~HC~~G 120 (169)
..+++.||++++++.+. .|++..=-....+. .. .......|.+ .|+.+++|++||-|... .|=..|
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~-~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GA-AATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GT-TTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CC-cceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 35889999999988643 35553210000110 00 0111344432 56778999999999763 466789
Q ss_pred CEEEEEecCC
Q 046887 121 MKLEIRTNGA 130 (169)
Q Consensus 121 mKl~I~V~~~ 130 (169)
|.-.|.|...
T Consensus 148 l~G~~iV~~~ 157 (327)
T 1kbv_A 148 MYGLILVEPK 157 (327)
T ss_dssp CEEEEEEECT
T ss_pred eEEEEEEecC
Confidence 9999998764
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=72.56 E-value=2.7 Score=36.12 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCeeeeccEeEEEEcCC-----cceEEEEccccCccccCCCCCcccccCCc---EEEecCCCceEEEcC---CCCcCCCC
Q 046887 52 AIDFHVGDILSFEYNSL-----FHSVLEVSRDAYESCNTQSPMKSYTTGKD---SITLESSDPRYFICG---APGHCQMG 120 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFicg---~~~HC~~G 120 (169)
..+++.||++++++.+. .|++..=-....+. .........|.+ .|+.+++|++||-|- ...|=..|
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 137 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence 35789999999988654 45543210000110 000011344432 567789999999994 34677789
Q ss_pred CEEEEEecCCC
Q 046887 121 MKLEIRTNGAG 131 (169)
Q Consensus 121 mKl~I~V~~~~ 131 (169)
|.-.+.|....
T Consensus 138 l~G~~iv~~~~ 148 (442)
T 2zoo_A 138 MYGLILVEPKE 148 (442)
T ss_dssp CEEEEEEECTT
T ss_pred cEEEEEEeCCC
Confidence 99988887543
No 53
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=65.27 E-value=1.4 Score=30.74 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=17.1
Q ss_pred hhccCCeeeeccEeEEEEcCC
Q 046887 48 AWAEAIDFHVGDILSFEYNSL 68 (169)
Q Consensus 48 ~Wa~~~~F~vGD~LvF~y~~~ 68 (169)
+-+..+..+.||.|+|+|...
T Consensus 71 ~Fv~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 71 NFVKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHHHTCCTTCEEEEEECSS
T ss_pred HHHHHcCCCCCCEEEEEEcCC
Confidence 345678999999999999853
No 54
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=65.05 E-value=6.7 Score=32.35 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.8
Q ss_pred EEEecCCCceEEEcCCCCcC-CCCCEEEEEecCCCC
Q 046887 98 SITLESSDPRYFICGAPGHC-QMGMKLEIRTNGAGN 132 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC-~~GmKl~I~V~~~~~ 132 (169)
.|+.+++|.++|.|....|+ +.||.-.|+|.....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 46778899999999988898 899999999986543
No 55
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=64.83 E-value=9.8 Score=31.39 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred CeeeeccEeEEEEcCC-----cceEEEEccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCCCC----cCCCC
Q 046887 53 IDFHVGDILSFEYNSL-----FHSVLEVSRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGAPG----HCQMG 120 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~~----HC~~G 120 (169)
.+++.||++++++.+. -|.+..-.....+ +. .+......|. ..|+++++|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~~-~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--GG-GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--GG-GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--CC-ccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 5789999999988753 3555432111000 00 1112234453 2577888999999999764 66789
Q ss_pred CEEEEEecCC
Q 046887 121 MKLEIRTNGA 130 (169)
Q Consensus 121 mKl~I~V~~~ 130 (169)
|.-.+.|...
T Consensus 150 l~G~~iV~~~ 159 (340)
T 2bw4_A 150 MNGAIMVLPR 159 (340)
T ss_dssp CEEEEEEECT
T ss_pred CEEEEEEccC
Confidence 9988888754
No 56
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=64.51 E-value=1.7 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=20.4
Q ss_pred hhccCCeeeeccEeEEEEcCCcceEEEE
Q 046887 48 AWAEAIDFHVGDILSFEYNSLFHSVLEV 75 (169)
Q Consensus 48 ~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 75 (169)
+-+..+.+++||.++|++.....-+++|
T Consensus 110 ~Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 110 EFTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 4466789999999999998543335554
No 57
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=60.61 E-value=4 Score=28.20 Aligned_cols=16 Identities=50% Similarity=0.762 Sum_probs=12.4
Q ss_pred CeeeeccEeEEE-EcCC
Q 046887 53 IDFHVGDILSFE-YNSL 68 (169)
Q Consensus 53 ~~F~vGD~LvF~-y~~~ 68 (169)
+.|++||.|+|. |+.+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999995 6544
No 58
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=54.56 E-value=20 Score=28.99 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=46.7
Q ss_pred CeeeeccEeEEEEcCC---cceEEEE--ccccCccccCCCCCcccccCC---cEEEecCCCceEEEcCCC---CcCCCCC
Q 046887 53 IDFHVGDILSFEYNSL---FHSVLEV--SRDAYESCNTQSPMKSYTTGK---DSITLESSDPRYFICGAP---GHCQMGM 121 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~---~hsV~~V--~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~---~HC~~Gm 121 (169)
.+++.||.+++++.+. .|++..= .....|.=. .........|. ..++.+++|++||-|-.. .|=..||
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p-~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 146 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTP-GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGL 146 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCT-TSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCC-CccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcC
Confidence 5789999999988643 3444221 111111000 00001223443 257788999999999876 3667899
Q ss_pred EEEEEecCCC
Q 046887 122 KLEIRTNGAG 131 (169)
Q Consensus 122 Kl~I~V~~~~ 131 (169)
.-.|.|....
T Consensus 147 ~G~liV~~~~ 156 (288)
T 3gdc_A 147 YGGFIVEPKE 156 (288)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEeCCc
Confidence 9888887654
No 59
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=48.75 E-value=9.8 Score=31.34 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=29.1
Q ss_pred EEEecCCCceEEEcCCCCcC-CCCCEEEEEecCC
Q 046887 98 SITLESSDPRYFICGAPGHC-QMGMKLEIRTNGA 130 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC-~~GmKl~I~V~~~ 130 (169)
.|+.+++|.++|.|-...|+ +.||.-.|+|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 46678899999999999999 9999999999764
No 60
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=45.11 E-value=8.1 Score=31.39 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=27.9
Q ss_pred EEEecCCCceEEEcCCCCcCCCCCEEEEEecC
Q 046887 98 SITLESSDPRYFICGAPGHCQMGMKLEIRTNG 129 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~~ 129 (169)
.+..+.||.+.|.|-+..|=+.||.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 34567899999999999999999999999863
No 61
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=42.96 E-value=18 Score=32.58 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=43.9
Q ss_pred CeeeeccEeEEEEcCCc--ceEEEE-ccccCccccCCCCC-cccccCCcEEEecCCCceEEEcCCCCcCCCCC-EEEEEe
Q 046887 53 IDFHVGDILSFEYNSLF--HSVLEV-SRDAYESCNTQSPM-KSYTTGKDSITLESSDPRYFICGAPGHCQMGM-KLEIRT 127 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~~--hsV~~V-~~~~Y~~C~~s~~~-~~~~~G~~~v~L~~~G~~YFicg~~~HC~~Gm-Kl~I~V 127 (169)
.-++-|-.|.|.=-.+. .-++.+ +..+...|...--. ..|.- .++.--++|.|||..+...-|++|- ++.|.|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (491)
T 3l6w_A 413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFEL--GKMYSVESGDYFMTASTTELCNDNNLRIHVHV 490 (491)
T ss_pred eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCcccc--cceEecCCCceEecCChHHHHhCCceeEEEEe
Confidence 35677777777443221 112222 44556678765211 11111 1233334799999999999999998 999987
Q ss_pred c
Q 046887 128 N 128 (169)
Q Consensus 128 ~ 128 (169)
.
T Consensus 491 ~ 491 (491)
T 3l6w_A 491 D 491 (491)
T ss_pred C
Confidence 3
No 62
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=42.22 E-value=3.5 Score=33.91 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEecCCCceEEEcCCCCcCCCCCEEEEEecCC
Q 046887 98 SITLESSDPRYFICGAPGHCQMGMKLEIRTNGA 130 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~~~ 130 (169)
.|+.+++|.+.|.|-...|-..||...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 466788999999999999999999998888653
No 63
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=42.14 E-value=18 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.2
Q ss_pred EEEecCCCceEEEcCCCCcCCC---CCEEEEEec
Q 046887 98 SITLESSDPRYFICGAPGHCQM---GMKLEIRTN 128 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~---GmKl~I~V~ 128 (169)
.++.+++|.||..|+. .|-. .|++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 4678999999999984 5554 599998887
No 64
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=42.11 E-value=26 Score=28.99 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred eeeeccEeEEEEcCC--------cceEEEEcc--ccCccccCCCCCcccccCCcEEEecCCCceEEEcCCCC--cCC-CC
Q 046887 54 DFHVGDILSFEYNSL--------FHSVLEVSR--DAYESCNTQSPMKSYTTGKDSITLESSDPRYFICGAPG--HCQ-MG 120 (169)
Q Consensus 54 ~F~vGD~LvF~y~~~--------~hsV~~V~~--~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~YFicg~~~--HC~-~G 120 (169)
+++.||++++++.+. -|.+.+... .|--.-....++..-.+=...|+++++|++||-|.... |=. .|
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~G 117 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRG 117 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTSC
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcCC
Q ss_pred CEEEEEecCCCC
Q 046887 121 MKLEIRTNGAGN 132 (169)
Q Consensus 121 mKl~I~V~~~~~ 132 (169)
|--.+.|.....
T Consensus 118 l~G~liV~p~~~ 129 (339)
T 2zwn_A 118 MWGPLIVDPKQP 129 (339)
T ss_dssp CEEEEEEECSSC
T ss_pred ceEeEEecCCCc
No 65
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=41.60 E-value=18 Score=30.25 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=24.7
Q ss_pred EEEecCCCceEEEcCCCCcCC---CCCEEEEEecCC
Q 046887 98 SITLESSDPRYFICGAPGHCQ---MGMKLEIRTNGA 130 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~---~GmKl~I~V~~~ 130 (169)
.++.+++|.||..|+. .|- ..|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 5788999999999984 455 459999998754
No 66
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=40.02 E-value=0.63 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=14.2
Q ss_pred CCeeeeccEeEEEEcCCcc
Q 046887 52 AIDFHVGDILSFEYNSLFH 70 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~h 70 (169)
++.|.|.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4789999999999986544
No 67
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=39.46 E-value=21 Score=29.18 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=23.8
Q ss_pred EEEecCCCceEEEcCCCCcCCCC---CEEEEEecC
Q 046887 98 SITLESSDPRYFICGAPGHCQMG---MKLEIRTNG 129 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~G---mKl~I~V~~ 129 (169)
.++.+++|.||..|+. -|-.| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 5788999999999984 56554 888888765
No 68
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=37.12 E-value=20 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=23.7
Q ss_pred EEEecCCCceEEEcCCCCcCCCC---CEEEEEecC
Q 046887 98 SITLESSDPRYFICGAPGHCQMG---MKLEIRTNG 129 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~G---mKl~I~V~~ 129 (169)
.++.+++|.||..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 4678999999999984 66654 888888764
No 69
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=36.10 E-value=17 Score=26.02 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=9.9
Q ss_pred CeeeeccEeEE
Q 046887 53 IDFHVGDILSF 63 (169)
Q Consensus 53 ~~F~vGD~LvF 63 (169)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 47899999999
No 70
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=34.63 E-value=52 Score=29.28 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=47.7
Q ss_pred CeeeeccEeEEEEcCCc----ceEEE--EccccCccccCCCCC----ccccc-CC---cEEEecCCCceEEEcCCCCcCC
Q 046887 53 IDFHVGDILSFEYNSLF----HSVLE--VSRDAYESCNTQSPM----KSYTT-GK---DSITLESSDPRYFICGAPGHCQ 118 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~~----hsV~~--V~~~~Y~~C~~s~~~----~~~~~-G~---~~v~L~~~G~~YFicg~~~HC~ 118 (169)
.+++.||+|+.++.+.- +++.- +... ......+.- ..... |. ..|+++++|++||=|-...|=.
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~--~~~~~DG~~~~tq~~I~P~G~~~~Y~f~~~q~GT~wYH~H~~~q~~ 146 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQK--DTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYG 146 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCCT--TCGGGSCCBTTTBCCBCTTTEEEEEEEECCSCEEEEEEECSTTGGG
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCccC--CCCCcCCCCccccCccCCCCCeEEEEEECCCCEEEEEEEcccchhc
Confidence 57889999999986432 34421 1110 001111100 01233 53 3678899999999999988888
Q ss_pred CCCEEEEEecCC
Q 046887 119 MGMKLEIRTNGA 130 (169)
Q Consensus 119 ~GmKl~I~V~~~ 130 (169)
.||--.+.|...
T Consensus 147 ~Gl~G~liV~~~ 158 (559)
T 2q9o_A 147 NGVVGTIQINGP 158 (559)
T ss_dssp GTCEEEEEEECC
T ss_pred CCceEEEEecCC
Confidence 999999988754
No 71
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=34.25 E-value=25 Score=28.94 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=27.9
Q ss_pred EEEecCCCceEEEcCCCCcC-CCCCEEEEEecCC
Q 046887 98 SITLESSDPRYFICGAPGHC-QMGMKLEIRTNGA 130 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC-~~GmKl~I~V~~~ 130 (169)
.|+.+++|.++|.|-...|| +.||.-.+.|...
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGA 308 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCC
Confidence 46678899999999999998 7899888888754
No 72
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=30.65 E-value=42 Score=27.57 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred eeeeccEeEEEEcCC--------cceEEEEc--cccCccccCCCCCcccccCCcEEEecCCCceEEEcCCCCcC---CCC
Q 046887 54 DFHVGDILSFEYNSL--------FHSVLEVS--RDAYESCNTQSPMKSYTTGKDSITLESSDPRYFICGAPGHC---QMG 120 (169)
Q Consensus 54 ~F~vGD~LvF~y~~~--------~hsV~~V~--~~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~YFicg~~~HC---~~G 120 (169)
+++.||+|++++.+. -|-+.+.. ..|--.=....++....+-...++.+++|++||-|.....= ..|
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~G 116 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRG 116 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHHSC
T ss_pred EEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhccCC
Q ss_pred CEEEEEecCCCC
Q 046887 121 MKLEIRTNGAGN 132 (169)
Q Consensus 121 mKl~I~V~~~~~ 132 (169)
|.-.|.|.....
T Consensus 117 l~G~lIV~~~~~ 128 (318)
T 3g5w_A 117 MWGPLIVEPKNP 128 (318)
T ss_dssp CEEEEEEECSSC
T ss_pred CEEEEEEcCCCc
No 73
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=30.11 E-value=81 Score=27.81 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=48.5
Q ss_pred CCeeeeccEeEEEEcCC----cceEEE----Ecccc-Ccccc-CCCCCcccccCC---cEEEecCCCceEEEcCCCCcCC
Q 046887 52 AIDFHVGDILSFEYNSL----FHSVLE----VSRDA-YESCN-TQSPMKSYTTGK---DSITLESSDPRYFICGAPGHCQ 118 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~----~hsV~~----V~~~~-Y~~C~-~s~~~~~~~~G~---~~v~L~~~G~~YFicg~~~HC~ 118 (169)
..+++.||+|+.++.+. .+++.- +.... .|.=. .+ ......|. .+|+++++|++||=|-...+=.
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vt--q~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASIS--QCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccc--cCCcCCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 35889999999998643 233321 11110 11100 00 01123443 3677889999999999888888
Q ss_pred CCCEEEEEecCCC
Q 046887 119 MGMKLEIRTNGAG 131 (169)
Q Consensus 119 ~GmKl~I~V~~~~ 131 (169)
.||--.+.|....
T Consensus 113 ~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 113 AGLYGSLIVDPPQ 125 (552)
T ss_dssp GTCEEEEEEECCT
T ss_pred ccCeeeEEEeCCc
Confidence 8999999987753
No 74
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=29.36 E-value=28 Score=29.30 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=39.8
Q ss_pred CeeeeccEeEEEEcCC--cceEEEEccccCccccCCCCCcc-cccCC---cEEEecCCCceEEEcCCCCcCCC---CCEE
Q 046887 53 IDFHVGDILSFEYNSL--FHSVLEVSRDAYESCNTQSPMKS-YTTGK---DSITLESSDPRYFICGAPGHCQM---GMKL 123 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~s~~~~~-~~~G~---~~v~L~~~G~~YFicg~~~HC~~---GmKl 123 (169)
..+-+|..+.|.-++. -|+...-+.. ++. --.|. ..++.+++|.||..|+. .|-. .|++
T Consensus 153 l~lP~g~~V~~~lTS~DViHsf~IP~lg----------~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~ 220 (315)
T 1fft_B 153 IAFPANTPVYFKVTSNSVMNSFFIPRLG----------SQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKF 220 (315)
T ss_dssp CCCCSSSEEEEEECBSSSCEEEEEGGGT----------EEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCE
T ss_pred EEEeCCCEEEEEEEeCCccceeeecccC----------cEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhccc
Confidence 4678888888888742 3333321110 111 11332 25788999999999984 6654 5898
Q ss_pred EEEec
Q 046887 124 EIRTN 128 (169)
Q Consensus 124 ~I~V~ 128 (169)
.|.|.
T Consensus 221 ~v~vv 225 (315)
T 1fft_B 221 KAIAT 225 (315)
T ss_dssp ECCBC
T ss_pred eEEEe
Confidence 88887
No 75
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=29.23 E-value=75 Score=27.91 Aligned_cols=34 Identities=3% Similarity=0.075 Sum_probs=28.3
Q ss_pred EEEe-cCCCceEEEcCCCCcCCCCCEEEEEecCCC
Q 046887 98 SITL-ESSDPRYFICGAPGHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 98 ~v~L-~~~G~~YFicg~~~HC~~GmKl~I~V~~~~ 131 (169)
+|++ +++|++||=|-...|=..|+--.+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5674 678999999999888889999999997653
No 76
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=28.69 E-value=38 Score=22.56 Aligned_cols=16 Identities=19% Similarity=0.519 Sum_probs=13.7
Q ss_pred CCeeeeccEeEEEEcC
Q 046887 52 AIDFHVGDILSFEYNS 67 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~ 67 (169)
-..+++||.+.|.+..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 4579999999999974
No 77
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=28.62 E-value=38 Score=23.05 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=15.7
Q ss_pred hhccCCeeeeccEeEEEEcC
Q 046887 48 AWAEAIDFHVGDILSFEYNS 67 (169)
Q Consensus 48 ~Wa~~~~F~vGD~LvF~y~~ 67 (169)
+.+.-..+++||.+.|.|..
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEE
Confidence 34445689999999999974
No 78
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=28.57 E-value=12 Score=26.98 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=10.2
Q ss_pred CeeeeccEeEEE
Q 046887 53 IDFHVGDILSFE 64 (169)
Q Consensus 53 ~~F~vGD~LvF~ 64 (169)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 468999999993
No 79
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=28.28 E-value=23 Score=24.69 Aligned_cols=29 Identities=10% Similarity=0.330 Sum_probs=23.4
Q ss_pred EEEecCCCCCCCCCCCCCCchhhccCCeeeeccEeEEE
Q 046887 27 VYKVGDDAGWSIPNAQSVNYNAWAEAIDFHVGDILSFE 64 (169)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~ 64 (169)
+.+|||+.| . ...+-|-.. |..||++.++
T Consensus 41 ~~~l~DeTG-~------I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-R------IRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-E------EEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-e------EEEEEEcCc--cCCCCEEEEE
Confidence 567899888 3 447888877 9999999988
No 80
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=27.89 E-value=42 Score=32.47 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=50.8
Q ss_pred CCeeeeccEeEEEEcC-----CcceEEEEc------cccCccccCCCCCcccccCCcEEEecCCCceEEEcCCCCcCCCC
Q 046887 52 AIDFHVGDILSFEYNS-----LFHSVLEVS------RDAYESCNTQSPMKSYTTGKDSITLESSDPRYFICGAPGHCQMG 120 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~-----~~hsV~~V~------~~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~YFicg~~~HC~~G 120 (169)
..++..||.|+.+... .-|++.+-. ...+++|... ...+-...++.+.+|++++-|-+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~----pg~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLF----PQTSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEEC----TTCEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeec----CCceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 4689999999888753 246665432 1224445432 111112356678899999999999999999
Q ss_pred CEEEEEecCC
Q 046887 121 MKLEIRTNGA 130 (169)
Q Consensus 121 mKl~I~V~~~ 130 (169)
|+..+.|...
T Consensus 709 m~g~~~V~~~ 718 (1065)
T 2j5w_A 709 MKQKYTVNQC 718 (1065)
T ss_dssp CEEEEEEECC
T ss_pred cEEEEEEcCC
Confidence 9999999664
No 81
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=27.62 E-value=85 Score=28.32 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=28.5
Q ss_pred EEEecCCCceEEEcCCCCcCCCCCEEEEEecCC
Q 046887 98 SITLESSDPRYFICGAPGHCQMGMKLEIRTNGA 130 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~~~ 130 (169)
+|+++++|++||=|-...+=..|+.-.|.|...
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 678899999999999888888899988888754
No 82
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=27.53 E-value=91 Score=27.52 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=47.8
Q ss_pred CeeeeccEeEEEEcCCc----ceE-----EEEccccCcc-ccCCCCCcccccCC---cEEEec-CCCceEEEcCCCCcCC
Q 046887 53 IDFHVGDILSFEYNSLF----HSV-----LEVSRDAYES-CNTQSPMKSYTTGK---DSITLE-SSDPRYFICGAPGHCQ 118 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~~----hsV-----~~V~~~~Y~~-C~~s~~~~~~~~G~---~~v~L~-~~G~~YFicg~~~HC~ 118 (169)
.+++.||.|+.++.+.- +++ .+-.....|. -..+ ......|. ..|+++ ++|++||=|-...|=.
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vt--q~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~ 113 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLT--QCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYE 113 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECSSCCEEEEEECCSSSGGG
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccc--cCCcCCCCeEEEEEEeCccceeEEEEEcCccccc
Confidence 58899999999997542 222 1110001110 0000 00123343 257777 8999999999988888
Q ss_pred CCCEEEEEecCCC
Q 046887 119 MGMKLEIRTNGAG 131 (169)
Q Consensus 119 ~GmKl~I~V~~~~ 131 (169)
.|+.-.+.|....
T Consensus 114 ~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 114 DGMKGLFIIKDDS 126 (534)
T ss_dssp GTCEEEEEEECTT
T ss_pred CcceeeEEeCCCC
Confidence 9999999997753
No 83
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=27.30 E-value=84 Score=27.56 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=47.1
Q ss_pred CeeeeccEeEEEEcCCc--------ceEEEE--ccccCccccCCCCC----cccccCC---cEEEe-cCCCceEEEcCCC
Q 046887 53 IDFHVGDILSFEYNSLF--------HSVLEV--SRDAYESCNTQSPM----KSYTTGK---DSITL-ESSDPRYFICGAP 114 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~~--------hsV~~V--~~~~Y~~C~~s~~~----~~~~~G~---~~v~L-~~~G~~YFicg~~ 114 (169)
.+++.||+|+.++.+.- ++|.-= ... ......+.- .....|. .+|++ +++|++||=|-..
T Consensus 37 I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~--~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH~~ 114 (495)
T 3t6v_A 37 IAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQK--GTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLT 114 (495)
T ss_dssp EEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCT--TCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEECST
T ss_pred EEEECCcEEEEEEEECCCCccCCCceEEEeCCcccC--CCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeeccch
Confidence 58899999999986532 233211 110 001111110 0123343 25777 6799999999988
Q ss_pred CcCCCCCEEEEEecCCC
Q 046887 115 GHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 115 ~HC~~GmKl~I~V~~~~ 131 (169)
.+=..|+.-.+.|....
T Consensus 115 ~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 115 TQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp TGGGGTCEEEEEEECTT
T ss_pred hHHhcCceEEEEEcCcc
Confidence 88888999999997543
No 84
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=26.88 E-value=39 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.5
Q ss_pred cCCeeeeccEeEEEEcCC
Q 046887 51 EAIDFHVGDILSFEYNSL 68 (169)
Q Consensus 51 ~~~~F~vGD~LvF~y~~~ 68 (169)
..++|.+||.|+|--+.+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 467999999999876644
No 85
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=26.59 E-value=68 Score=21.10 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCC--cccccCCcEEEe
Q 046887 52 AIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPM--KSYTTGKDSITL 101 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~--~~~~~G~~~v~L 101 (169)
..+|.+||++.=+| +|.+.-+++.=.+++ ..+++ -.|.+|. ..+|
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKdgT-~e~L 53 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKDGT-ELAL 53 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETTSC-EEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecCCC-EEee
Confidence 35899999999999 677766665333333 33443 2456643 3344
No 86
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=26.46 E-value=43 Score=28.41 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=29.2
Q ss_pred EEEecCCCceEEEcCCCCcC-CCCCEEEEEecCCCC
Q 046887 98 SITLESSDPRYFICGAPGHC-QMGMKLEIRTNGAGN 132 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC-~~GmKl~I~V~~~~~ 132 (169)
.|+.+++|.++|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 46778899999999988897 789988888876654
No 87
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=26.01 E-value=22 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=11.7
Q ss_pred eccEeEEEEcCCcceEEEEc
Q 046887 57 VGDILSFEYNSLFHSVLEVS 76 (169)
Q Consensus 57 vGD~LvF~y~~~~hsV~~V~ 76 (169)
-|+.+.|+-..+.++-+..+
T Consensus 77 ~gK~V~~~S~AgY~S~V~y~ 96 (126)
T 4dny_A 77 EGKMVRFVSSAGYSSTVFYG 96 (126)
T ss_dssp TTCEEEEEEECSSCEEEEET
T ss_pred CCCEEEEEEecCccEEEEEC
Confidence 56666666666655555443
No 88
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=25.92 E-value=93 Score=27.36 Aligned_cols=77 Identities=8% Similarity=0.104 Sum_probs=47.1
Q ss_pred CeeeeccEeEEEEcCCc--------ceEEEE--ccccCccccCCCCC----cccccCC---cEEEe-cCCCceEEEcCCC
Q 046887 53 IDFHVGDILSFEYNSLF--------HSVLEV--SRDAYESCNTQSPM----KSYTTGK---DSITL-ESSDPRYFICGAP 114 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~~--------hsV~~V--~~~~Y~~C~~s~~~----~~~~~G~---~~v~L-~~~G~~YFicg~~ 114 (169)
.+++.||+|+.++.+.- +++.-= ... ......+.. .....|. .+|++ +++|++||=|-..
T Consensus 36 I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~--~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH~~ 113 (499)
T 3pxl_A 36 VAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQH--GTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLS 113 (499)
T ss_dssp EEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCT--TCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEECST
T ss_pred EEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccC--CCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeeccch
Confidence 58899999999986532 334211 100 001111110 0123443 25777 6799999999988
Q ss_pred CcCCCCCEEEEEecCCC
Q 046887 115 GHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 115 ~HC~~GmKl~I~V~~~~ 131 (169)
.+=..|+.-.+.|....
T Consensus 114 ~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 114 TQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp TGGGGTCEEEEEEECTT
T ss_pred hHHhccceeEEEEcCCc
Confidence 88888999999987543
No 89
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=25.54 E-value=35 Score=30.76 Aligned_cols=32 Identities=6% Similarity=-0.067 Sum_probs=28.2
Q ss_pred EEEecCCCceEEEcCCCCcCCCCCEEEEEecC
Q 046887 98 SITLESSDPRYFICGAPGHCQMGMKLEIRTNG 129 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~~HC~~GmKl~I~V~~ 129 (169)
.|..+.+|.+.|-|-+..|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45678899999999999999999999999964
No 90
>1w0n_A Endo-1,4-beta-xylanase D; hydrolase, carbohydrate-binding module, carbohydrate binding, CBM36; 0.8A {Paenibacillus polymyxa} SCOP: b.18.1.28 PDB: 1ux7_A
Probab=25.43 E-value=1e+02 Score=22.80 Aligned_cols=65 Identities=11% Similarity=0.228 Sum_probs=38.7
Q ss_pred eeccEeEEE--EcCCcceEEEEccccCccccCCCCCcccccCCcEEEe----cCCCceEEEcCCC--------CcCCCCC
Q 046887 56 HVGDILSFE--YNSLFHSVLEVSRDAYESCNTQSPMKSYTTGKDSITL----ESSDPRYFICGAP--------GHCQMGM 121 (169)
Q Consensus 56 ~vGD~LvF~--y~~~~hsV~~V~~~~Y~~C~~s~~~~~~~~G~~~v~L----~~~G~~YFicg~~--------~HC~~Gm 121 (169)
.-||.++|+ |.++.|++-. +.|...+.. .+|.| .+.|++||--.++ .|-..-|
T Consensus 41 an~D~~~~~~nFa~~~~sfsl------RgasnNsn~-------A~VdLrigg~~~GTfy~~gt~P~v~t~nnv~~~tg~q 107 (131)
T 1w0n_A 41 ANADYVSYSQYFANSTHNISV------RGASSNAGT-------AKVDLVIGGVTVGSFNFTGKTPTVQTLSNITHATGDQ 107 (131)
T ss_dssp STTCEEEEEEEESSSEEEEEE------EEEESSSSE-------EEEEEEETTEEEEEEEEESSSCEEEEEEEEECCCEEE
T ss_pred ecCCEEEEEEEeccccceEEE------EeccCCCCc-------eEEEEEeCCeeeEEEEeccccceeeeeccccccCCce
Confidence 457888886 4466777643 234433322 23333 2247888887766 2444458
Q ss_pred EEEEEecCCCCC
Q 046887 122 KLEIRTNGAGNS 133 (169)
Q Consensus 122 Kl~I~V~~~~~~ 133 (169)
++.+.|.+..++
T Consensus 108 ~vel~vT~dnGt 119 (131)
T 1w0n_A 108 EIKLALTSDDGT 119 (131)
T ss_dssp EEEEEESCSSSS
T ss_pred EEEEEEECCCCc
Confidence 999999877543
No 91
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=24.57 E-value=71 Score=26.07 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=27.4
Q ss_pred EEEecCCCceEEEcCCC-CcCCCCCEEEEEecCCC
Q 046887 98 SITLESSDPRYFICGAP-GHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 98 ~v~L~~~G~~YFicg~~-~HC~~GmKl~I~V~~~~ 131 (169)
.|+.+++|.++|.|... .|=..||.-.|.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 46678899999999977 36688999889987654
No 92
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=24.46 E-value=48 Score=26.50 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCCceEEEcCCCCcCCCCCEEEEEecCCC
Q 046887 103 SSDPRYFICGAPGHCQMGMKLEIRTNGAG 131 (169)
Q Consensus 103 ~~G~~YFicg~~~HC~~GmKl~I~V~~~~ 131 (169)
.+|.++|-|-+..|=..||...+.|....
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~ 267 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPD 267 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCC
Confidence 58999999999999999999999998764
No 93
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=23.19 E-value=58 Score=22.60 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=23.8
Q ss_pred eEEEecCCCCCCCCCCCCCCchhhc--cCCeeeeccEeEEE
Q 046887 26 AVYKVGDDAGWSIPNAQSVNYNAWA--EAIDFHVGDILSFE 64 (169)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~Y~~Wa--~~~~F~vGD~LvF~ 64 (169)
..-++||+.| . ..++.|. ....+..||++.++
T Consensus 37 ~~~~l~DeTG-~------I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 37 QVGLLGDETG-I------IKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEEECTTC-C------EEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEEECCCC-e------EEEEEECcccccccCCCCEEEEE
Confidence 3467889888 3 4478887 33489999999988
No 94
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=23.17 E-value=42 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=24.7
Q ss_pred CCCCCCC---CCCCCchhhc-cCCeeeeccEeEEEEcCC
Q 046887 34 AGWSIPN---AQSVNYNAWA-EAIDFHVGDILSFEYNSL 68 (169)
Q Consensus 34 ~GW~~~~---~~~~~Y~~Wa-~~~~F~vGD~LvF~y~~~ 68 (169)
..|+..+ +....|+.|. ...+...|+.|.|.|..+
T Consensus 27 g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g~~~~~~F~dG 65 (104)
T 2laa_A 27 GSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFNDG 65 (104)
T ss_dssp SCCCSSSCEECEEETTTTEEEEEEECTTCSCEEEEEECS
T ss_pred CCCCcCCccccccccCCCeEEEEEECCCCCEEEEEEeCC
Confidence 4799764 2234588995 666666789999999654
No 95
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.06 E-value=91 Score=20.57 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCeeeeccEeEEEEcCCcceEEEEccccCccccCCCCC--cccccCCcEEEec
Q 046887 52 AIDFHVGDILSFEYNSLFHSVLEVSRDAYESCNTQSPM--KSYTTGKDSITLE 102 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~~~--~~~~~G~~~v~L~ 102 (169)
..+|.+||++.=+|. |.+.-+++.-.+++ ..+++ -.|.+|. ..+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKdgT-~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKDGT-ELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTTSC-EEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecCCC-EEEec
Confidence 358999999999998 76666655333333 33443 2456643 44443
No 96
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=23.00 E-value=28 Score=29.52 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=25.2
Q ss_pred CeeeeccEe------EEEEcCCcceEEEE-ccccCccccCC
Q 046887 53 IDFHVGDIL------SFEYNSLFHSVLEV-SRDAYESCNTQ 86 (169)
Q Consensus 53 ~~F~vGD~L------vF~y~~~~hsV~~V-~~~~Y~~C~~s 86 (169)
..++.||+. ||||...+..|... +-..|..|+..
T Consensus 43 s~v~~GDtFtL~MP~VfKf~~~~t~v~L~a~G~~yAtC~~~ 83 (312)
T 2y7l_A 43 TTADPGDTFTLILPCVFKFITTQTSVDLTADGVSYATCDFN 83 (312)
T ss_dssp TTCCTTCEEEEEEETEEEESSSCSEEEEEETTEEEEEEEEE
T ss_pred CcCCCCCEEEEecccEEEEccCCceEEEecCCeEEEEEecc
Confidence 467889987 89998777777544 66678888664
No 97
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=22.64 E-value=56 Score=28.15 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=46.1
Q ss_pred CeeeeccEeEEEEcCC---cceEEE----EccccCccccCCCCCcccccCC---cEEEecC-CCceEEEcCC----CCcC
Q 046887 53 IDFHVGDILSFEYNSL---FHSVLE----VSRDAYESCNTQSPMKSYTTGK---DSITLES-SDPRYFICGA----PGHC 117 (169)
Q Consensus 53 ~~F~vGD~LvF~y~~~---~hsV~~----V~~~~Y~~C~~s~~~~~~~~G~---~~v~L~~-~G~~YFicg~----~~HC 117 (169)
.+++.||+|+.++.+. .+++.- +..+ .|. .+......|. ..+++++ +|++||=|-. ..|=
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~-~DG----~~~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~ 126 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP-LMG----GPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQV 126 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCGG-GSC----SGGGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCCC-CCC----CCcCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhhhH
Confidence 4789999999999753 344421 1111 111 0011223343 3688886 8999999987 3466
Q ss_pred CCCCEEEEEecCC
Q 046887 118 QMGMKLEIRTNGA 130 (169)
Q Consensus 118 ~~GmKl~I~V~~~ 130 (169)
..||--.+.|...
T Consensus 127 ~~Gl~G~liV~~~ 139 (451)
T 2uxt_A 127 YNGLAGMWLVEDE 139 (451)
T ss_dssp HTTCEEEEEEECH
T ss_pred hhcceEEEEEecC
Confidence 7899988888765
No 98
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=22.36 E-value=42 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=15.8
Q ss_pred hhccCCeeeeccEeEEEEcC
Q 046887 48 AWAEAIDFHVGDILSFEYNS 67 (169)
Q Consensus 48 ~Wa~~~~F~vGD~LvF~y~~ 67 (169)
+-+.-..+++||.+.|.+..
T Consensus 41 ~~~~l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 41 PAGLPQGLKAGDRVAFSFRL 60 (82)
T ss_dssp TTCCCSSCSTTCEEEEEEEE
T ss_pred ChhHhhcCCCCCEEEEEEEE
Confidence 33445689999999999974
No 99
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=21.67 E-value=57 Score=31.51 Aligned_cols=77 Identities=9% Similarity=0.166 Sum_probs=49.9
Q ss_pred CCeeeeccEeEEEEcC-C----cceEEEEccccCccccCCCCC--c--ccccCC---cEEEecCCCceEEEcCCCCcCCC
Q 046887 52 AIDFHVGDILSFEYNS-L----FHSVLEVSRDAYESCNTQSPM--K--SYTTGK---DSITLESSDPRYFICGAPGHCQM 119 (169)
Q Consensus 52 ~~~F~vGD~LvF~y~~-~----~hsV~~V~~~~Y~~C~~s~~~--~--~~~~G~---~~v~L~~~G~~YFicg~~~HC~~ 119 (169)
..+++.|+++.|++-+ + .|++. +....+. . ++. . ....|. -.|+.+++|.|+|.|-...|=..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i~Gh~f~---v-~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-FHGQALT---N-KNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-ETTCCEE---E-TTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-EcCCEEE---E-CCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 3588999999999964 2 23332 2221222 1 111 1 122343 24677889999999999999999
Q ss_pred CCEEEEEecCCCCC
Q 046887 120 GMKLEIRTNGAGNS 133 (169)
Q Consensus 120 GmKl~I~V~~~~~~ 133 (169)
||.-.+.|......
T Consensus 347 Gm~~~~~V~~~~~~ 360 (1065)
T 2j5w_A 347 GLQAFFQVQECNKS 360 (1065)
T ss_dssp TCEEEEEEECSCCC
T ss_pred CCEEEEEEecCCCc
Confidence 99999999876543
No 100
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=20.56 E-value=39 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=16.1
Q ss_pred hhccCCeeeeccEeEEEEcC
Q 046887 48 AWAEAIDFHVGDILSFEYNS 67 (169)
Q Consensus 48 ~Wa~~~~F~vGD~LvF~y~~ 67 (169)
..+..+..+.||.++|....
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECC
T ss_pred HHHHHcCCCCCCEEEEEEec
Confidence 44567788999999999875
No 101
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=20.32 E-value=35 Score=24.65 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=31.1
Q ss_pred ceEEEecCC---CCCCCC---CCCCC----CchhhccCCeeeeccEeEEEEc
Q 046887 25 GAVYKVGDD---AGWSIP---NAQSV----NYNAWAEAIDFHVGDILSFEYN 66 (169)
Q Consensus 25 a~~~~VGg~---~GW~~~---~~~~~----~Y~~Wa~~~~F~vGD~LvF~y~ 66 (169)
...|+||+. ..|+.. ++... +|..|.....+..|..+.|||-
T Consensus 23 e~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyv 74 (131)
T 2z0b_A 23 EVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYF 74 (131)
T ss_dssp CEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEE
T ss_pred CEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEE
Confidence 357889984 459863 12223 6889999889988999999995
Done!