BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046888
(1170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 2 ASSSSSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDED-LNRGDEISPALLNAI 60
+ S S Y+VFLSFRG DTRE FT LY +L KI TF D+D L +G EI P LL AI
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87
Query: 61 EGSKISVIIFSKDYASSKWCPNELVNILKCKNLNG-QIVIPIYYHVSPSDVRKQTGTFGE 119
+ SKI V I S YA SKWC EL I++ + + +I++PI+Y V PSDVR QTG + +
Sbjct: 88 DQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147
Query: 120 GFVRLEQQFKEKAETVQKWRDVMTQTSYLSGHESTKIRPEAMLVEVIVKDI 170
F + +F +T+Q W+D + + L G K + + + + DI
Sbjct: 148 AFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 5/172 (2%)
Query: 3 SSSSSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIE 61
SS ++ YDVFLSFRG DTR NF S LY L + I+TF D+ +L G SP L + IE
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 62 GSKISVIIFSKDYASSKWCPNELVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGF 121
S+ +V++ S++YA+S WC +ELV I+ + V+PI+Y V P+ VR QTG E F
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 122 VRLEQQFKEKAETVQKWRDVMTQTSYLSGHESTKIRPEAMLVEVIVKDILKK 173
+ +E E V KWR +T + LSG S ++ LV+ I +I K
Sbjct: 122 KK--HASREDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 26/202 (12%)
Query: 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF 730
H + + E+P + + LE L + R L+ + SI L L L + C L
Sbjct: 108 HXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTEL 166
Query: 731 LE---------------SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLV 775
E +L+ + L T + LP+S N++ L +L + S L L +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226
Query: 776 SLPASLLSGLFSLNWLNLNNC-ALTAIPEEIGCLPSLEWLELRE-NNFESLPVSIKQLSR 833
LP L L+L C AL P G L+ L L++ +N +LP+ I +L++
Sbjct: 227 HLP--------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 834 LKRLDLSNCSMLQSIPELPPSL 855
L++LDL C L +P L L
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQL 300
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 785 LFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSM 844
L L ++ L +P+ LE L L N +LP SI L+RL+ L + C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 845 LQSIPE 850
L +PE
Sbjct: 163 LTELPE 168
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 75/212 (35%), Gaps = 48/212 (22%)
Query: 563 IPEGLDMSFEEQHSDSKVQFLDGLDYLPEK------LRYLHLHKYPLRTLPSNFKPKN-- 614
+P+ D +F H GL LP+ L L L + PLR LP++ N
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 615 ----------LIELNLPFSK---------VVQI------WEGKK-------KAFKLKSIN 642
L EL P + +V + W G + LKS+
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 643 LSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKR 702
+ +S P P LE ++L C TA+ P L+ L + C
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGC-------TALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 703 LKRVSTSICKLKSLIWLCLNECLNLESFLESL 734
L + I +L L L L C+NL S L SL
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSL 296
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 25/156 (16%)
Query: 721 LNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPAS 780
L +CL+ ++ L+ NLG +++ ELP E++ + L+ L LP S
Sbjct: 65 LRDCLDRQAH--ELELNNLGLSSLPELPPHLESLVASC----------NSLTELPELPQS 112
Query: 781 LLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLS 840
L S L N L AL+ +P P LE+L + N E LP ++ S LK +D+
Sbjct: 113 LKSLLVDNNNLK----ALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161
Query: 841 NCSMLQSIPELPPSLKWLQAGNCKRLQSLPEIPSRP 876
N S L+ +P+LPPSL+++ AGN +L+ LPE+ + P
Sbjct: 162 NNS-LKKLPDLPPSLEFIAAGN-NQLEELPELQNLP 195
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 22/151 (14%)
Query: 733 SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLN 792
SL+ I G + ELP +N+ L T+ + +LL L LP SL LN
Sbjct: 216 SLESIVAGNNILEELPE-LQNLPFLTTIYADN----NLLKTLPDLPPSL-------EALN 263
Query: 793 LNNCALTAIPEEIGCLP-SLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPEL 851
+ + LT +PE LP SL +L++ EN F L L L ++ + ++S+ +L
Sbjct: 264 VRDNYLTDLPE----LPQSLTFLDVSENIFSGLSELPPNLYYLN----ASSNEIRSLCDL 315
Query: 852 PPSLKWLQAGNCKRLQSLPEIPSRPEEIDAS 882
PPSL+ L N K ++ LP +P R E + AS
Sbjct: 316 PPSLEELNVSNNKLIE-LPALPPRLERLIAS 345
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 729 SFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSL 788
SFL+ + N + +LP S E I G LE L L +LP L+ +++
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPSLEFIAA-GNNQLEE------LPELQNLP--FLTAIYA- 202
Query: 789 NWLNLNNCALTAIPEEIGCLP-SLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
+N +L +P+ LP SLE + N E LP ++ L L + N ++L++
Sbjct: 203 -----DNNSLKKLPD----LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADN-NLLKT 251
Query: 848 IPELPPSLKWLQAGNCKRLQSLPEIP 873
+P+LPPSL+ L + L LPE+P
Sbjct: 252 LPDLPPSLEALNVRD-NYLTDLPELP 276
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 678 AIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE-------SF 730
++ VP+ + + +L+ NR + S C+ +++WL N ++ +
Sbjct: 21 GLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTL 80
Query: 731 LESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNW 790
LE L + + V + P++F + L TL L+R GL L L GL +L +
Sbjct: 81 LEQLDLSDNAQLRVVD-PTTFRGLGHLHTLHLDR-------CGLQELGPGLFRGLAALQY 132
Query: 791 LNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPV-SIKQLSRLKRLDL 839
L L + L A+P+ L +L L L N S+P + + L L RL L
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLL 183
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 638 LKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEV-PSSVECLTNLEYLY 696
L+ ++LS + L R+ DP+ L ++ HL+ C ++E+ P L L+YLY
Sbjct: 81 LEQLDLSDNAQL-RVVDPTTFRGLGHLH---TLHLDRC--GLQELGPGLFRGLAALQYLY 134
Query: 697 INRCKRLKRVSTSICKLKSLIWLCLN----ECLNLESF--LESLKKINLGRTTVTEL-PS 749
+ + L +L L L+ + +F L SL ++ L + V + P
Sbjct: 135 LQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLP 809
+F ++ L TL L + L LPA +L L SL +L LN+ + P
Sbjct: 195 AFRDLGRLMTLYL-------FANNLSMLPAEVLVPLRSLQYLRLNDNPWVC---DCRARP 244
Query: 810 SLEWLELRENNFESLPVSIKQ------LSRLKRLDLSNCSM 844
WL+ + +P ++ Q L RL DL C++
Sbjct: 245 LWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLEGCAV 285
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLP 809
F+++ LGTLGL +Q L SLP + L L+ L L L ++P + L
Sbjct: 79 FDDLTELGTLGLANNQ-------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 810 SLEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQSIP 849
L+ L L N +S+P + +L+ L+ L LS + LQS+P
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVP 171
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLPSLEWLELRENNFESLPVSI-K 829
+GL +L + GL L WLNL+ L + + L L L L N SLP+ +
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 830 QLSRLKRLDLSNCSMLQSIP----ELPPSLKWLQAGNCKRLQSLP 870
L++L +L L + L+S+P + LK L+ N +LQS+P
Sbjct: 105 HLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLP 809
F+++ LGTLGL +Q L SLP + L L+ L L L ++P + L
Sbjct: 79 FDDLTELGTLGLANNQ-------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 810 SLEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQSIP 849
L+ L L N +S+P + +L+ L+ L LS + LQS+P
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVP 171
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLPSLEWLELRENNFESLPVSI-K 829
+GL +L + GL L WLNL+ L + + L L L L N SLP+ +
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 830 QLSRLKRLDLSNCSMLQSIP----ELPPSLKWLQAGNCKRLQSLP 870
L++L +L L + L+S+P + LK L+ N +LQS+P
Sbjct: 105 HLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 791 LNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPE 850
L LN L+++P+ + P + LE+ +N SLP L L D + L ++PE
Sbjct: 64 LQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACD----NRLSTLPE 117
Query: 851 LPPSLKWLQAGNCKRLQSLPEIPSRPEEIDA 881
LP SLK L N +L LPE+P+ E I+A
Sbjct: 118 LPASLKHLDVDN-NQLTXLPELPALLEYINA 147
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 2 ASSSSSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAI 60
A +S+ +D+F+S ED + +F L L + + D+ L GD + ++ +
Sbjct: 13 ADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGL 71
Query: 61 EGSKISVIIFSKDYASSKWCPNELVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGE 119
S+ +++ S + +W EL + + ++ ++PI++ VS +V + T +
Sbjct: 72 GSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 734 LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNL 793
L ++ L ++TELP+ +N+ L L L ++ L SLPA L S F L +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-------LTSLPAELGS-CFQLKYFYF 300
Query: 794 NNCALTAIPEEIGCLPSLEWLELRENNFE 822
+ +T +P E G L +L++L + N E
Sbjct: 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L L LN +LT +P EI L +L L+L N SLP + +LK + +M+ +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTT 307
Query: 848 IP 849
+P
Sbjct: 308 LP 309
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 791 LNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIP 849
L+L+N + I I L L L N+ LP IK LS L+ LDLS+ + L S+P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQL 831
+ L LPA + L +L L+L++ LT++P E+G L++ +N +LP L
Sbjct: 257 NSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315
Query: 832 SRLKRL 837
L+ L
Sbjct: 316 CNLQFL 321
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCL 808
+F ++ L L L R+ + + G +GL SLN L L + LT IP L
Sbjct: 94 TFRHLHHLEVLQLGRNSIRQIEVGA-------FNGLASLNTLELFDNWLTVIPSGAFEYL 146
Query: 809 PSLEWLELRENNFESLP-VSIKQLSRLKRLDLSNCSMLQSIPELPP----SLKWLQAGNC 863
L L LR N ES+P + ++ L RLDL L+ I E +LK+L G C
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206
Query: 864 KRLQSLPEIPSRPEEIDASLLQKLSKYSYDDEVEDVNGSSSIRFLFMDCIKMYQEESKNN 923
++ ++P+ + L+ + + +G SS++ K++ S+ +
Sbjct: 207 ----NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK-------KLWVMNSQVS 255
Query: 924 LAESQLRIQHMAVTSLRLFYEFQVIRNSLSFAPLSLYLYLRFVA 967
L E A L E + N+LS P L+ LR++
Sbjct: 256 LIERN------AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 730 FLESLKKINLGRTTVTELPS-SFENIEGLGTLGL-ERSQLPHLLSGLVSLPASLLSGLFS 787
+L L+++ L + +PS +F + L L L E +L ++ G GLF+
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-------FEGLFN 197
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRLDLSN 841
L +LNL C + +P + L LE LE+ N+F + P S LS LK+L + N
Sbjct: 198 LKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 769 HLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFES-LPVS 827
++LSG + + LF LN L N+ + +IP+E+G L L L+L N + +P +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILN-LGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 828 IKQLSRLKRLDLSNCSMLQSIPEL 851
+ L+ L +DLSN ++ IPE+
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 733 SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLN 792
SLK ++L V + S+F +E L L + S L + S+ L +L +L+
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLD 427
Query: 793 LNNC-ALTAIPEEIGCLPSLEWLELRENNFES--LPVSIKQLSRLKRLDLSNCSMLQSIP 849
+++ A L SLE L++ N+F+ LP +L L LDLS C + Q P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 850 ELPPSLKWLQAGN--CKRLQSLPE 871
SL LQ N +L+S+P+
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPD 511
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 769 HLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFES-LPVS 827
++LSG + + LF LN L N+ + +IP+E+G L L L+L N + +P +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILN-LGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 828 IKQLSRLKRLDLSNCSMLQSIPEL 851
+ L+ L +DLSN ++ IPE+
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 37.0 bits (84), Expect = 0.059, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 37/258 (14%)
Query: 634 KAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLE 693
+ +++ +++LS P PS NL +N +N + +P ++ LT L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---NLVGPIPPAIAKLTQLH 104
Query: 694 YLYINRCKRLKRVSTSICKLKSLIWL-----CLNECLNLE-SFLESLKKINL-GRTTVTE 746
YLYI + + ++K+L+ L L+ L S L +L I G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 747 LPSSFENIEGLGT-LGLERSQL----PHLLSGL----VSLPASLLSGLFSLNW------- 790
+P S+ + L T + + R++L P + L V L ++L G S+ +
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 791 -LNLNNCALTAIPEEIGCLPSLEWLELRENN-FESLPVSIKQLSRLKRLDLSNCSMLQSI 848
++L +L ++G +L L+LR N + +LP + QL L L++S ++ I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 849 PELPPSLKWLQAGNCKRL 866
P Q GN +R
Sbjct: 285 P---------QGGNLQRF 293
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 774 LVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESL-PVSIKQL 831
LV + SGL SL L L C LT+IP E + L L L LR N ++ S K+L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 832 SRLKRLDLSNCSMLQSI 848
RLK L++S+ L ++
Sbjct: 200 YRLKVLEISHWPYLDTM 216
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQV-----VSL 265
+G++G G+GKT +++ L N ++ E G V E G L H K S+
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYHEMKDSGVISKTSM 206
Query: 266 LLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCP 316
+ G+ R+ G + Y +R V + +D++ F Q V L G P
Sbjct: 207 VFGQMNEPPGARLRVALTGLTMAEYFRDR-EGQDVLLFIDNIFRFTQAGSEVSALLGRMP 265
Query: 317 GS 318
+
Sbjct: 266 SA 267
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 23/119 (19%)
Query: 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV----- 826
SGL +LP L + + +L + N +L A+P P L LE+ N SLPV
Sbjct: 50 SGLTTLPDCLPAHITTLVIPDNNLTSLPALP------PELRTLEVSGNQLTSLPVLPPGL 103
Query: 827 ---SI--KQLSRLKRLDLSNCSM------LQSIPELPPSLKWLQAGNCKRLQSLPEIPS 874
SI L+ L L C + L S+P LPP L+ L + +L SLP +PS
Sbjct: 104 LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD-NQLASLPALPS 161
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 733 SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLN 792
SLK ++L V + S+F +E L L + S L + S+ L +L +L+
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLD 427
Query: 793 LNNC-ALTAIPEEIGCLPSLEWLELRENNFES--LPVSIKQLSRLKRLDLSNCSMLQSIP 849
+++ A L SLE L++ N+F+ LP +L L LDLS C + Q P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 850 ELPPSLKWLQAGN 862
SL LQ N
Sbjct: 488 TAFNSLSSLQVLN 500
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 39/260 (15%)
Query: 84 LVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAE-TVQKWRDVM 142
++N L+ K G++V+ + H+ + VR EG VR E+ +V R+ +
Sbjct: 66 ILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETL 125
Query: 143 TQTSYLSGHESTKIRPEAMLVEVIVKDILKK---LECTSMSSDSSKGLVGLSSRIECIKS 199
+ + G + P +K L+K + S + S+ + L + I+ +
Sbjct: 126 GRIINVIGEPIDERGP--------IKSKLRKPIHADPPSFAEQSTSAEI-LETGIKVVDL 176
Query: 200 LLCTGLPDVR--IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG----- 252
L P R +G++G G+GKT ++ L N I+ G V E G
Sbjct: 177 LA----PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYR 232
Query: 253 ----VGLVHLHKQV-VSLLLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDV 298
G+++L + V+L+ G+ R+ G I Y + V + +D++
Sbjct: 233 EMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDE-EGQDVLLFIDNI 291
Query: 299 SEFEQLKYLVGWLDGFCPGS 318
F Q V L G P +
Sbjct: 292 FRFTQAGSEVSALLGRIPSA 311
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 804 EIGC---LPSLEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQSIPELP----PSL 855
E+G LPSL LEL +N ++P + + LS+L+ L L N + ++SIP PSL
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSL 133
Query: 856 KWLQAGNCKRLQSLPE 871
+ L G KRL+ + E
Sbjct: 134 RRLDLGELKRLEYISE 149
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 730 FLESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSL 788
+L L+++ L + +PS +F + L L L L L + + GL +L
Sbjct: 105 YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE------LKRLEYISEAAFEGLVNL 158
Query: 789 NWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRL 837
+LNL C L IP + L LE LEL N + + P S + L+ L++L
Sbjct: 159 RYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 733 SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLN 792
SLK ++L V + S+F +E L L + S L + S+ L +L +L+
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLD 451
Query: 793 LNNC-ALTAIPEEIGCLPSLEWLELRENNFES--LPVSIKQLSRLKRLDLSNCSMLQSIP 849
+++ A L SLE L++ N+F+ LP +L L LDLS C + Q P
Sbjct: 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Query: 850 ELPPSLKWLQAGN 862
SL LQ N
Sbjct: 512 TAFNSLSSLQVLN 524
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 38/285 (13%)
Query: 589 LPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQY 648
L E +R + L K + + + + +++ +L + KV I +G + L+ +NL+ +Q
Sbjct: 21 LAEGIRAV-LQKASVTDVVTQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQ- 77
Query: 649 LIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST 708
I D S NL ++ T+L + I ++ S+++ LTNL LY+N + +S
Sbjct: 78 ---ITDISPLSNLVKL-----TNLYIGTNKITDI-SALQNLTNLRELYLNE-DNISDIS- 126
Query: 709 SICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELP----SSFENIEGLGTLGLER 764
+ L L L NL L TVTE + N+ L +L L
Sbjct: 127 PLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186
Query: 765 SQLPHL--LSGLVSL-----------PASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSL 811
+Q+ + L+ L SL + ++ LN L + N +T + + L L
Sbjct: 187 NQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDL-SPLANLSQL 245
Query: 812 EWLELRENNFESLPVSIKQLSRLKRLD-----LSNCSMLQSIPEL 851
WLE+ N + ++K L++LK L+ +S+ S+L ++ +L
Sbjct: 246 TWLEIGTNQISDIN-AVKDLTKLKXLNVGSNQISDISVLNNLSQL 289
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 729 SFLESLKKINLGRTTVTELPSS-FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFS 787
++ +++K+ +G + LP F+N+ L L LER+ L SLP +
Sbjct: 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-------SLPRGIFHNTPK 142
Query: 788 LNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQ 846
L L+++N L I ++ SL+ L+L N RL +DLS
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------------RLTHVDLS------ 183
Query: 847 SIPELPPSLKWLQAGNCKRLQSLPEIPSRPEEIDAS 882
L PSL A L S IP EE+DAS
Sbjct: 184 ----LIPSL--FHANVSYNLLSTLAIPIAVEELDAS 213
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 84 LVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAE-TVQKWRDVM 142
++N L+ K G++V+ + H+ + VR EG VR E+ +V R+ +
Sbjct: 39 ILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETL 98
Query: 143 TQTSYLSGHESTKIRPEAMLVEVIVKDILKK---LECTSMSSDSSKGLVGLSSRIECIKS 199
+ + G + P +K L+K + S + S+ + L + I+ +
Sbjct: 99 GRIINVIGEPIDERGP--------IKSKLRKPIHADPPSFAEQSTSAEI-LETGIKVVDL 149
Query: 200 LLCTGLPDVR--IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG----- 252
L P R +G++G G+GKT ++ L N I+ G V E G
Sbjct: 150 LA----PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYR 205
Query: 253 ----VGLVHLHKQV-VSLLLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDV 298
G+++L + V+L+ G+ R+ G I Y + V + +D++
Sbjct: 206 EMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDE-EGQDVLLFIDNI 264
Query: 299 SEFEQLKYLVGWLDGFCP 316
F Q V L G P
Sbjct: 265 FRFTQAGSEVSALLGRIP 282
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 39/260 (15%)
Query: 84 LVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAE-TVQKWRDVM 142
++N L+ K G++V+ + H+ + VR EG VR E+ +V R+ +
Sbjct: 28 ILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETL 87
Query: 143 TQTSYLSGHESTKIRPEAMLVEVIVKDILKK---LECTSMSSDSSKGLVGLSSRIECIKS 199
+ + G + P +K L+K + S + S+ + L + I+ +
Sbjct: 88 GRIINVIGEPIDERGP--------IKSKLRKPIHADPPSFAEQSTSAEI-LETGIKVVDL 138
Query: 200 LLCTGLPDVR--IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG----- 252
L P R +G++G G+GKT ++ L N I+ G V E G
Sbjct: 139 LA----PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYR 194
Query: 253 ----VGLVHLHKQV-VSLLLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDV 298
G+++L + V+L+ G+ R+ G I Y + V + +D++
Sbjct: 195 EMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDE-EGQDVLLFIDNI 253
Query: 299 SEFEQLKYLVGWLDGFCPGS 318
F Q V L G P +
Sbjct: 254 FRFTQAGSEVSALLGRIPSA 273
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 84 LVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAE-TVQKWRDVM 142
++N L+ K G++V+ + H+ + VR EG VR E+ +V R+ +
Sbjct: 39 ILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETL 98
Query: 143 TQTSYLSGHESTKIRPEAMLVEVIVKDILKK---LECTSMSSDSSKGLVGLSSRIECIKS 199
+ + G + P +K L+K + S + S+ + L + I+ +
Sbjct: 99 GRIINVIGEPIDERGP--------IKSKLRKPIHADPPSFAEQSTSAEI-LETGIKVVDL 149
Query: 200 LLCTGLPDVR--IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG----- 252
L P R +G++G G+GKT ++ L N I+ G V E G
Sbjct: 150 LA----PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYR 205
Query: 253 ----VGLVHLHKQV-VSLLLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDV 298
G+++L + V+L+ G+ R+ G I Y + V + +D++
Sbjct: 206 EMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDE-EGQDVLLFIDNI 264
Query: 299 SEFEQLKYLVGWLDGFCP 316
F Q V L G P
Sbjct: 265 FRFTQAGSEVSALLGRIP 282
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 84 LVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAE-TVQKWRDVM 142
++N L+ K G++V+ + H+ + VR EG VR E+ +V R+ +
Sbjct: 33 ILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETL 92
Query: 143 TQTSYLSGHESTKIRPEAMLVEVIVKDILKK---LECTSMSSDSSKGLVGLSSRIECIKS 199
+ + G + P +K L+K + S + S+ + L + I+ +
Sbjct: 93 GRIINVIGEPIDERGP--------IKSKLRKPIHADPPSFAEQSTSAEI-LETGIKVVDL 143
Query: 200 LLCTGLPDVR--IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG----- 252
L P R +G++G G+GKT ++ L N I+ G V E G
Sbjct: 144 LA----PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYR 199
Query: 253 ----VGLVHLHKQV-VSLLLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDV 298
G+++L + V+L+ G+ R+ G I Y + V + +D++
Sbjct: 200 EMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDE-EGQDVLLFIDNI 258
Query: 299 SEFEQLKYLVGWLDGFCP 316
F Q V L G P
Sbjct: 259 FRFTQAGSEVSALLGRIP 276
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 39/260 (15%)
Query: 84 LVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAE-TVQKWRDVM 142
++N L+ K G++V+ + H+ + VR EG VR E+ +V R+ +
Sbjct: 28 ILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETL 87
Query: 143 TQTSYLSGHESTKIRPEAMLVEVIVKDILKK---LECTSMSSDSSKGLVGLSSRIECIKS 199
+ + G + P +K L+K + S + S+ + L + I+ +
Sbjct: 88 GRIINVIGEPIDERGP--------IKSKLRKPIHADPPSFAEQSTSAEI-LETGIKVVDL 138
Query: 200 LLCTGLPDVR--IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG----- 252
L P R +G++G G+GKT ++ L N I+ G V E G
Sbjct: 139 LA----PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYR 194
Query: 253 ----VGLVHLHKQV-VSLLLGE---------RLETGGPNIPAYALERLRRTKVFMVLDDV 298
G+++L + V+L+ G+ R+ G I Y + V + +D++
Sbjct: 195 EMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDE-EGQDVLLFIDNI 253
Query: 299 SEFEQLKYLVGWLDGFCPGS 318
F Q V L G P +
Sbjct: 254 FRFTQAGSEVSALLGRIPSA 273
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 731 LESLKKINLGRTTVTELPSS-FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLN 789
L +L + L + LP+ F+ + L L L +QL SLP + L +L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------SLPDGVFDKLTNLT 136
Query: 790 WLNLNNCALTAIPEEI-GCLPSLEWLELRENNFESLPVSI-KQLSRLKRLDLSNCSMLQS 847
+LNL + L ++P+ + L +L L+L N +SLP + +L++LK L L + L+S
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKS 195
Query: 848 IPE 850
+P+
Sbjct: 196 VPD 198
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 804 EIGC---LPSLEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQSIPELP----PSL 855
E+G LPSL LEL +N ++P + + LS+L+ L L N + ++SIP PSL
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSL 133
Query: 856 KWLQAGNCKRLQSLPE 871
+ L G KRL+ + E
Sbjct: 134 RRLDLGELKRLEYISE 149
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 730 FLESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSL 788
+L L+++ L + +PS +F + L L L L L + + GL +L
Sbjct: 105 YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE------LKRLEYISEAAFEGLVNL 158
Query: 789 NWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRL 837
+LNL C L IP + L LE LEL N + + P S + L+ L++L
Sbjct: 159 RYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 774 LVSLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLPSLEWLELRENNFESLPVSI-KQL 831
L SLP + + L SL +LNL+ L ++P + L L+ L L N +SLP + +L
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123
Query: 832 SRLKRLDLSNCSMLQSIPE 850
++LK L L + L+S+P+
Sbjct: 124 TQLKDLRLYQ-NQLKSVPD 141
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 733 SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLN 792
SLK ++L V + S+F +E L L + S L + V L L +L +L+
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL------SLRNLIYLD 132
Query: 793 LNNC-ALTAIPEEIGCLPSLEWLELRENNFES--LPVSIKQLSRLKRLDLSNCSMLQSIP 849
+++ A L SLE L++ N+F+ LP +L L LDLS C + Q P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 850 ELPPSLKWLQAGN 862
SL LQ N
Sbjct: 193 TAFNSLSSLQVLN 205
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCL--NECLNLESF----LESLKKINL 739
++ L N+ YL + K L +S ++ +L +L +L L N+ +L + L +LK++ L
Sbjct: 59 IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 740 GRTTVTELPSS-FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCAL 798
+ LP F+ + L L L +QL SLP + L +L L+L+N L
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-------SLPKGVFDKLTNLTRLDLDNNQL 169
Query: 799 TAIPEEI-GCLPSLEWLELRENNFESLP 825
++PE + L L+ L L +N +S+P
Sbjct: 170 QSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 729 SFLESLKKINLGRTTVTELPSS-FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFS 787
++ +++K+ +G + LP F+N+ L L LER+ L SLP +
Sbjct: 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-------SLPRGIFHNTPK 148
Query: 788 LNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQ 846
L L+++N L I ++ SL+ L+L N RL +DLS
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------------RLTHVDLS------ 189
Query: 847 SIPELPPSLKWLQAGNCKRLQSLPEIPSRPEEIDAS 882
L PSL A L S IP EE+DAS
Sbjct: 190 ----LIPSL--FHANVSYNLLSTLAIPIAVEELDAS 219
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT +++ L + I+ E G V E G L H
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYH 200
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 58 LTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 115
Query: 848 IP 849
+P
Sbjct: 116 LP 117
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 671 HLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICK-LKSL--IWLCLN--EC 724
L+L + +PS + LT L LY+N +L+ + I K LK+L +W+ N +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 725 LNLESF--LESLKKINLGRTTVTELPSS-FENIEGLGTLGLERSQLPHLLSGLVSLPASL 781
L + F L +L ++ L R + LP F+++ L L L ++L SLP +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGV 152
Query: 782 LSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFESLPV-SIKQLSRLKRLDL 839
L SL L L N L +PE L L+ L+L N + +P + L +LK L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ C LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 58/141 (41%), Gaps = 25/141 (17%)
Query: 733 SLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQL-PHLLSGLV--------------- 775
SL+K++L + E P F+ I L L L +QL PHL L
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 776 -SLPASLLSGLFSLNWLNLNNCALTAIP-EEIG-----CLPSLEWLELRENNFESL-PVS 827
L A+ S L W NL L+ ++G LPSL +L L NN + L P S
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 828 IKQLSRLKRLDLSNCSMLQSI 848
LS L+ L L QS+
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSV 312
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 23/91 (25%)
Query: 811 LEWLELRENNFESLPVSIKQLSRLKR-----LDLSNCSMLQSIPEL--------PPSLKW 857
+EW + N + S S+KQ+S+ + +D+ +++IPEL PPS++
Sbjct: 84 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVED 143
Query: 858 LQAGNCKRLQSLPEIPSRPEEIDASLLQKLS 888
L+ KRL+ R E + S+ ++LS
Sbjct: 144 LK----KRLE------GRGTETEESINKRLS 164
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 202 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 248
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 202
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 202
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 154 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 200
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 202
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 198
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257
+G++G G+GKT ++ L N ++ G V E G L H
Sbjct: 144 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 190
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 23/91 (25%)
Query: 811 LEWLELRENNFESLPVSIKQLSRLKR-----LDLSNCSMLQSIPEL--------PPSLKW 857
+EW + N + S S+KQ+S+ + +D+ +++IPEL PPS++
Sbjct: 69 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVED 128
Query: 858 LQAGNCKRLQSLPEIPSRPEEIDASLLQKLS 888
L+ KRL+ R E + S+ ++LS
Sbjct: 129 LK----KRLE------GRGTETEESINKRLS 149
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 23/91 (25%)
Query: 811 LEWLELRENNFESLPVSIKQLSRLKR-----LDLSNCSMLQSIPEL--------PPSLKW 857
+EW + N + S S+KQ+S+ + +D+ +++IPEL PPS++
Sbjct: 68 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVED 127
Query: 858 LQAGNCKRLQSLPEIPSRPEEIDASLLQKLS 888
L+ KRL+ R E + S+ ++LS
Sbjct: 128 LK----KRLE------GRGTETEESINKRLS 148
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQS 847
L LNL+ LT + + G LP L L+L N +SLP+ + L L LD+S + L S
Sbjct: 57 LTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTS 114
Query: 848 IP 849
+P
Sbjct: 115 LP 116
>pdb|1K28|D Chain D, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 391
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 216 MGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGG 275
+G T VK +FN N+F+ + +++ V E+ N + HL+ +LET
Sbjct: 313 IGNFNLTPGVKIIFNDSKNQFKTEFYVDEVIHELSNNNSVTHLY----XFTNATKLETID 368
Query: 276 P 276
P
Sbjct: 369 P 369
>pdb|1PDJ|D Chain D, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|E Chain E, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|F Chain F, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1WTH|D Chain D, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
pdb|2Z6B|D Chain D, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 391
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 216 MGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLH 259
+G T VK +FN N+F+ + +++ V E+ N + HL+
Sbjct: 313 IGNFNLTPGVKIIFNDSKNQFKTEFYVDEVIHELSNNNSVTHLY 356
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSL 265
PDVR+V + G G + L ++ ++EG+ I +RE + + LV+L K VVS
Sbjct: 56 PDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGR--IRIMREARDLVLNLVNLDKPVVSA 113
Query: 266 LLGERLETG 274
+ G + G
Sbjct: 114 IRGPAVGAG 122
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 26/103 (25%)
Query: 146 SYLSGH---ESTKIRPEAMLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLC 202
++L G+ E+ KIRP+ +K +LK++ +S D L ++++ K +
Sbjct: 232 NFLKGYLPAENMKIRPDE------IKFMLKEVSDLDLSKD-------LKTKMKWTKIIKK 278
Query: 203 TG----------LPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235
G + I+GI G GIGKTT + L +I+ +
Sbjct: 279 LGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 204 GLPDVR---IVGIWGMGGIGKTTIVKALFNQISNEF 236
GLP + I+G+ G G+GKTT++K L +I F
Sbjct: 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,830,571
Number of Sequences: 62578
Number of extensions: 1472266
Number of successful extensions: 4024
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3857
Number of HSP's gapped (non-prelim): 162
length of query: 1170
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1060
effective length of database: 8,089,757
effective search space: 8575142420
effective search space used: 8575142420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)