Query 046888
Match_columns 1170
No_of_seqs 1060 out of 5945
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4E-141 1E-145 1384.5 89.7 1064 1-1126 1-1104(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 5.4E-56 1.2E-60 550.5 30.8 584 188-822 161-783 (889)
3 PLN03194 putative disease resi 100.0 7.1E-42 1.5E-46 336.2 15.3 156 2-174 19-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-35 2.5E-40 335.4 15.2 268 190-463 1-283 (287)
5 PLN00113 leucine-rich repeat r 99.9 3.9E-25 8.4E-30 291.5 19.9 344 503-865 42-416 (968)
6 PLN00113 leucine-rich repeat r 99.9 4E-24 8.7E-29 281.9 18.0 266 592-864 165-463 (968)
7 KOG0444 Cytoskeletal regulator 99.9 4.7E-25 1E-29 245.8 -4.2 272 552-850 101-380 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.4E-29 242.9 -5.5 281 581-871 69-380 (1255)
9 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.5E-25 247.6 23.1 260 591-871 611-911 (1153)
10 KOG4194 Membrane glycoprotein 99.8 1.8E-22 4E-27 224.8 2.7 320 534-861 82-447 (873)
11 KOG4194 Membrane glycoprotein 99.8 1.7E-21 3.7E-26 217.2 1.8 289 535-842 130-449 (873)
12 KOG0618 Serine/threonine phosp 99.8 2.4E-21 5.3E-26 227.5 -4.0 184 673-865 247-488 (1081)
13 PF01582 TIR: TIR domain; Int 99.8 2.7E-20 5.8E-25 185.2 2.2 132 12-143 1-140 (141)
14 KOG0472 Leucine-rich repeat pr 99.8 1.1E-21 2.4E-26 210.1 -9.0 244 581-844 59-309 (565)
15 smart00255 TIR Toll - interleu 99.8 3E-18 6.5E-23 170.9 11.7 137 9-147 1-139 (140)
16 KOG0472 Leucine-rich repeat pr 99.7 1.4E-20 3E-25 201.7 -9.8 233 592-843 46-286 (565)
17 PRK15387 E3 ubiquitin-protein 99.7 4.4E-17 9.6E-22 199.4 15.6 240 554-850 222-463 (788)
18 PRK15387 E3 ubiquitin-protein 99.7 2E-16 4.3E-21 193.7 15.4 229 591-863 222-455 (788)
19 PRK15370 E3 ubiquitin-protein 99.6 2.5E-16 5.5E-21 194.3 10.7 223 589-845 197-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.6 5.5E-16 1.2E-20 191.3 11.7 238 590-863 177-425 (754)
21 KOG0618 Serine/threonine phosp 99.6 3.5E-17 7.5E-22 193.0 -1.2 235 592-846 220-490 (1081)
22 KOG0617 Ras suppressor protein 99.5 1E-16 2.3E-21 153.2 -5.2 161 604-843 24-184 (264)
23 KOG0617 Ras suppressor protein 99.5 8.7E-16 1.9E-20 146.9 -5.6 150 686-863 29-183 (264)
24 PF13676 TIR_2: TIR domain; PD 99.4 4.8E-14 1E-18 132.0 2.5 87 12-104 1-87 (102)
25 PRK04841 transcriptional regul 99.4 2.1E-11 4.6E-16 160.4 28.4 298 179-500 8-335 (903)
26 KOG4237 Extracellular matrix p 99.4 3.7E-14 7.9E-19 153.0 -0.6 242 587-844 63-358 (498)
27 KOG4237 Extracellular matrix p 99.4 7.6E-14 1.6E-18 150.6 0.5 249 597-854 52-344 (498)
28 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-12 2.8E-17 150.0 0.3 207 611-844 21-262 (319)
29 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-12 3.7E-17 149.0 -0.2 234 592-844 24-290 (319)
30 PRK00411 cdc6 cell division co 99.2 4.4E-09 9.5E-14 124.4 27.0 286 180-479 25-358 (394)
31 KOG0532 Leucine-rich repeat (L 99.2 2.1E-12 4.5E-17 145.6 -2.6 207 596-863 55-270 (722)
32 KOG4658 Apoptotic ATPase [Sign 99.1 2.9E-11 6.3E-16 152.1 5.4 288 591-900 523-847 (889)
33 TIGR02928 orc1/cdc6 family rep 99.1 4.4E-08 9.6E-13 114.6 28.0 287 180-479 10-350 (365)
34 COG3899 Predicted ATPase [Gene 99.1 4.6E-09 1E-13 133.0 20.9 308 186-499 1-388 (849)
35 TIGR00635 ruvB Holliday juncti 99.0 2.2E-09 4.8E-14 122.1 15.3 265 185-479 4-289 (305)
36 PRK00080 ruvB Holliday junctio 99.0 2.3E-09 5E-14 122.8 14.1 261 181-479 21-310 (328)
37 TIGR03015 pepcterm_ATPase puta 99.0 2.1E-08 4.6E-13 112.0 19.6 180 208-394 43-242 (269)
38 PF01637 Arch_ATPase: Archaeal 98.9 4.3E-09 9.3E-14 114.7 12.0 198 187-389 1-233 (234)
39 PF05729 NACHT: NACHT domain 98.9 5.8E-09 1.3E-13 107.1 11.9 143 209-359 1-163 (166)
40 KOG0532 Leucine-rich repeat (L 98.9 7.4E-11 1.6E-15 133.3 -3.1 191 593-843 77-271 (722)
41 COG4886 Leucine-rich repeat (L 98.9 1.9E-09 4.2E-14 127.5 7.4 146 677-850 150-295 (394)
42 KOG3207 Beta-tubulin folding c 98.9 3.9E-10 8.5E-15 124.1 0.1 64 782-845 267-339 (505)
43 COG2909 MalT ATP-dependent tra 98.9 1.4E-07 3E-12 113.0 20.9 296 179-501 13-342 (894)
44 COG4886 Leucine-rich repeat (L 98.8 7.2E-09 1.5E-13 122.7 6.7 177 591-803 116-294 (394)
45 KOG1259 Nischarin, modulator o 98.7 3.2E-09 6.9E-14 111.0 1.1 79 670-768 287-365 (490)
46 COG3903 Predicted ATPase [Gene 98.7 2.8E-08 6.1E-13 110.4 8.5 282 206-499 12-316 (414)
47 PF14580 LRR_9: Leucine-rich r 98.7 6.6E-09 1.4E-13 105.6 2.6 104 732-845 19-126 (175)
48 PTZ00112 origin recognition co 98.6 1.8E-06 4E-11 104.2 20.7 249 180-441 750-1030(1164)
49 KOG3207 Beta-tubulin folding c 98.6 9.3E-09 2E-13 113.5 0.6 87 751-844 218-313 (505)
50 KOG1259 Nischarin, modulator o 98.6 7.9E-09 1.7E-13 108.1 -0.3 102 733-844 285-386 (490)
51 PRK13342 recombination factor 98.6 2.3E-06 5.1E-11 101.1 20.3 179 181-390 8-196 (413)
52 PF14580 LRR_9: Leucine-rich r 98.6 2.9E-08 6.2E-13 100.9 3.5 137 676-841 6-149 (175)
53 COG2256 MGS1 ATPase related to 98.6 5.1E-07 1.1E-11 99.7 13.2 171 184-385 23-207 (436)
54 PRK06893 DNA replication initi 98.6 1.6E-06 3.4E-11 93.8 16.3 150 208-390 39-203 (229)
55 KOG1909 Ran GTPase-activating 98.5 3.3E-09 7.2E-14 114.1 -5.6 193 630-844 86-310 (382)
56 PRK15386 type III secretion pr 98.5 5.4E-07 1.2E-11 102.3 9.8 51 691-743 73-123 (426)
57 TIGR03420 DnaA_homol_Hda DnaA 98.4 4.7E-06 1E-10 90.4 15.8 172 185-391 15-202 (226)
58 PRK07003 DNA polymerase III su 98.4 1.6E-05 3.4E-10 96.2 20.6 185 181-390 12-221 (830)
59 PLN03150 hypothetical protein; 98.4 7E-07 1.5E-11 110.8 9.4 110 734-850 420-533 (623)
60 PRK14961 DNA polymerase III su 98.4 1.9E-05 4.2E-10 91.6 20.3 182 181-387 12-217 (363)
61 KOG3678 SARM protein (with ste 98.3 1.2E-06 2.6E-11 96.5 8.7 91 7-103 610-709 (832)
62 PRK14949 DNA polymerase III su 98.3 2.9E-05 6.2E-10 95.9 21.3 187 181-387 12-217 (944)
63 PRK12402 replication factor C 98.3 2.6E-05 5.6E-10 90.2 20.3 200 181-388 11-224 (337)
64 PRK14960 DNA polymerase III su 98.3 4.9E-05 1.1E-09 91.2 22.5 182 181-387 11-216 (702)
65 PRK07471 DNA polymerase III su 98.3 5.2E-05 1.1E-09 87.2 22.1 197 180-390 14-238 (365)
66 PRK14963 DNA polymerase III su 98.3 2.8E-05 6E-10 93.2 20.2 195 181-387 10-214 (504)
67 PRK12323 DNA polymerase III su 98.3 3.7E-05 8.1E-10 91.9 20.2 183 180-387 11-222 (700)
68 PF13173 AAA_14: AAA domain 98.3 3E-06 6.6E-11 82.7 9.4 122 208-351 2-127 (128)
69 PRK00440 rfc replication facto 98.3 2E-05 4.3E-10 90.4 17.7 185 181-387 13-200 (319)
70 PRK15386 type III secretion pr 98.3 1.1E-06 2.4E-11 99.8 7.1 91 633-741 49-141 (426)
71 KOG1909 Ran GTPase-activating 98.3 8.1E-08 1.7E-12 103.6 -2.2 156 688-846 90-284 (382)
72 PRK14957 DNA polymerase III su 98.3 4.7E-05 1E-09 91.3 20.6 185 181-390 12-221 (546)
73 PRK04195 replication factor C 98.3 3.5E-05 7.5E-10 93.1 19.6 181 181-388 10-200 (482)
74 cd00009 AAA The AAA+ (ATPases 98.3 1E-05 2.2E-10 80.7 12.7 122 188-327 1-130 (151)
75 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 7E-11 82.9 8.7 113 207-326 3-125 (131)
76 PF05496 RuvB_N: Holliday junc 98.2 2E-05 4.3E-10 82.0 14.6 179 180-390 19-221 (233)
77 PLN03025 replication factor C 98.2 9.2E-05 2E-09 84.6 21.7 183 181-385 9-195 (319)
78 TIGR01242 26Sp45 26S proteasom 98.2 3.4E-06 7.4E-11 98.2 9.8 173 183-383 120-327 (364)
79 PRK05564 DNA polymerase III su 98.2 3E-05 6.4E-10 88.4 17.1 178 185-390 4-190 (313)
80 PRK14962 DNA polymerase III su 98.2 0.00012 2.7E-09 86.9 22.7 188 180-392 9-221 (472)
81 PRK08691 DNA polymerase III su 98.2 6.3E-05 1.4E-09 91.1 20.1 182 181-387 12-217 (709)
82 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.6E-12 111.3 -1.7 55 788-843 234-288 (414)
83 PLN03150 hypothetical protein; 98.2 4.1E-06 9E-11 104.0 9.1 105 756-867 419-529 (623)
84 PRK06645 DNA polymerase III su 98.2 0.00022 4.8E-09 85.1 23.0 187 180-386 16-225 (507)
85 PRK14956 DNA polymerase III su 98.2 3.4E-05 7.4E-10 90.0 15.7 192 181-385 14-217 (484)
86 KOG2120 SCF ubiquitin ligase, 98.1 6.4E-08 1.4E-12 101.6 -6.1 157 686-864 206-374 (419)
87 PRK07940 DNA polymerase III su 98.1 6.1E-05 1.3E-09 87.4 17.4 178 185-390 5-213 (394)
88 PRK08727 hypothetical protein; 98.1 0.00014 3.1E-09 78.9 19.1 168 184-386 18-200 (233)
89 PTZ00202 tuzin; Provisional 98.1 0.00032 7E-09 79.4 21.6 185 163-359 236-434 (550)
90 COG1474 CDC6 Cdc6-related prot 98.1 0.0015 3.3E-08 75.1 28.0 287 180-479 12-334 (366)
91 PF13855 LRR_8: Leucine rich r 98.1 1.7E-06 3.8E-11 72.1 2.7 58 786-843 1-60 (61)
92 PRK08903 DnaA regulatory inact 98.1 4.4E-05 9.4E-10 82.8 14.4 176 183-394 16-203 (227)
93 TIGR02397 dnaX_nterm DNA polym 98.1 0.0001 2.2E-09 86.0 18.3 185 181-390 10-218 (355)
94 PF13191 AAA_16: AAA ATPase do 98.1 5.7E-06 1.2E-10 86.5 7.0 50 186-235 1-51 (185)
95 PRK07994 DNA polymerase III su 98.1 6.6E-05 1.4E-09 91.4 16.8 183 181-388 12-218 (647)
96 PRK13341 recombination factor 98.1 4E-05 8.7E-10 95.3 14.8 173 181-385 24-212 (725)
97 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 77.3 15.9 161 196-386 3-187 (188)
98 PRK09112 DNA polymerase III su 98.1 0.00016 3.4E-09 82.8 18.6 196 180-390 18-240 (351)
99 PRK05896 DNA polymerase III su 98.0 9.2E-05 2E-09 88.9 16.7 187 180-391 11-222 (605)
100 KOG2028 ATPase related to the 98.0 2.3E-05 4.9E-10 84.9 10.3 153 181-359 134-294 (554)
101 KOG0531 Protein phosphatase 1, 98.0 1.5E-06 3.2E-11 103.2 1.5 217 592-848 96-321 (414)
102 PRK14955 DNA polymerase III su 98.0 0.00019 4.2E-09 84.3 19.0 199 180-387 11-225 (397)
103 PRK14964 DNA polymerase III su 98.0 0.00015 3.3E-09 85.8 17.8 181 181-386 9-213 (491)
104 PRK14951 DNA polymerase III su 98.0 0.00048 1E-08 83.9 22.5 182 181-387 12-222 (618)
105 KOG4341 F-box protein containi 98.0 5.6E-07 1.2E-11 99.3 -3.1 217 611-847 188-441 (483)
106 PRK14958 DNA polymerase III su 98.0 0.00027 5.9E-09 85.0 19.4 182 181-387 12-217 (509)
107 PRK03992 proteasome-activating 98.0 4.1E-05 8.8E-10 89.5 12.2 173 183-383 129-336 (389)
108 PRK14959 DNA polymerase III su 98.0 0.00024 5.3E-09 85.8 18.8 189 181-394 12-225 (624)
109 PRK08084 DNA replication initi 98.0 0.00021 4.6E-09 77.6 16.8 169 185-388 22-207 (235)
110 PRK14969 DNA polymerase III su 98.0 0.00052 1.1E-08 83.1 21.9 185 181-390 12-221 (527)
111 PRK14087 dnaA chromosomal repl 98.0 0.00061 1.3E-08 81.0 21.5 163 209-391 142-320 (450)
112 PRK09087 hypothetical protein; 98.0 0.00023 5E-09 76.6 16.3 138 208-389 44-194 (226)
113 PRK07764 DNA polymerase III su 97.9 0.00041 8.9E-09 87.5 20.5 180 181-385 11-216 (824)
114 PRK05642 DNA replication initi 97.9 0.00048 1E-08 74.7 18.4 149 208-389 45-207 (234)
115 PHA02544 44 clamp loader, smal 97.9 0.00019 4E-09 82.2 15.9 152 181-358 17-172 (316)
116 PF13855 LRR_8: Leucine rich r 97.9 7.1E-06 1.5E-10 68.4 2.9 59 756-821 2-61 (61)
117 PF14516 AAA_35: AAA-like doma 97.9 0.0052 1.1E-07 70.4 27.3 206 180-396 6-245 (331)
118 PRK14952 DNA polymerase III su 97.9 0.00077 1.7E-08 81.9 21.2 187 181-392 9-222 (584)
119 KOG2120 SCF ubiquitin ligase, 97.9 6E-07 1.3E-11 94.5 -5.2 180 614-843 186-374 (419)
120 PF00308 Bac_DnaA: Bacterial d 97.9 0.00041 8.8E-09 74.4 16.2 157 207-387 33-205 (219)
121 TIGR02881 spore_V_K stage V sp 97.8 0.00015 3.3E-09 80.2 12.8 153 186-360 7-192 (261)
122 PRK09111 DNA polymerase III su 97.8 0.0012 2.7E-08 80.6 21.6 195 180-388 19-231 (598)
123 TIGR02903 spore_lon_C ATP-depe 97.8 0.00012 2.5E-09 90.5 12.9 50 181-232 150-199 (615)
124 PRK14954 DNA polymerase III su 97.8 0.0011 2.4E-08 81.1 20.9 196 181-385 12-223 (620)
125 PRK14970 DNA polymerase III su 97.8 0.00037 7.9E-09 81.5 16.4 181 181-385 13-204 (367)
126 PRK14950 DNA polymerase III su 97.8 0.0012 2.5E-08 81.6 20.9 196 181-390 12-221 (585)
127 PRK06305 DNA polymerase III su 97.8 0.00084 1.8E-08 79.8 18.4 187 181-390 13-223 (451)
128 KOG1859 Leucine-rich repeat pr 97.8 1.5E-06 3.3E-11 101.4 -4.7 149 683-843 102-265 (1096)
129 PRK07133 DNA polymerase III su 97.8 0.00083 1.8E-08 82.5 18.3 190 180-390 13-220 (725)
130 TIGR02880 cbbX_cfxQ probable R 97.7 0.00063 1.4E-08 76.0 15.9 155 186-360 23-209 (284)
131 PRK09376 rho transcription ter 97.7 3.2E-05 7E-10 87.1 5.4 92 207-301 168-268 (416)
132 PRK06620 hypothetical protein; 97.7 0.0002 4.3E-09 76.4 11.0 130 209-384 45-183 (214)
133 KOG0989 Replication factor C, 97.7 0.0014 3.1E-08 70.4 17.2 192 180-390 31-231 (346)
134 TIGR03689 pup_AAA proteasome A 97.7 0.0005 1.1E-08 81.7 15.2 158 183-359 180-378 (512)
135 PRK08451 DNA polymerase III su 97.7 0.00095 2.1E-08 79.9 17.4 184 181-388 10-216 (535)
136 PTZ00454 26S protease regulato 97.7 0.00056 1.2E-08 79.7 15.0 155 183-361 143-331 (398)
137 COG2255 RuvB Holliday junction 97.7 0.0011 2.4E-08 70.4 15.6 265 180-482 21-315 (332)
138 PTZ00361 26 proteosome regulat 97.7 0.00019 4E-09 84.1 11.1 153 185-361 183-369 (438)
139 TIGR02639 ClpA ATP-dependent C 97.7 0.00044 9.5E-09 87.8 15.3 169 161-359 163-358 (731)
140 KOG2982 Uncharacterized conser 97.7 1.7E-05 3.6E-10 83.9 2.0 219 593-838 47-285 (418)
141 PRK14953 DNA polymerase III su 97.7 0.0012 2.6E-08 79.0 18.0 185 181-390 12-220 (486)
142 KOG4341 F-box protein containi 97.7 3.3E-06 7E-11 93.4 -3.6 86 611-701 162-253 (483)
143 KOG1859 Leucine-rich repeat pr 97.7 9.5E-07 2.1E-11 103.0 -8.4 91 673-767 170-266 (1096)
144 TIGR00362 DnaA chromosomal rep 97.6 0.0031 6.7E-08 74.7 20.6 159 208-388 136-308 (405)
145 PF12799 LRR_4: Leucine Rich r 97.6 4.9E-05 1.1E-09 58.2 3.4 39 787-825 2-40 (44)
146 PRK14948 DNA polymerase III su 97.6 0.0017 3.7E-08 80.0 18.6 197 181-390 12-222 (620)
147 PF05673 DUF815: Protein of un 97.6 0.0035 7.5E-08 66.5 18.2 55 181-236 23-80 (249)
148 PRK00149 dnaA chromosomal repl 97.6 0.0013 2.9E-08 78.9 16.7 159 208-388 148-320 (450)
149 PRK14971 DNA polymerase III su 97.6 0.0063 1.4E-07 75.1 22.7 179 181-385 13-217 (614)
150 PRK05707 DNA polymerase III su 97.6 0.002 4.3E-08 73.3 16.9 158 208-390 22-203 (328)
151 KOG2543 Origin recognition com 97.6 0.0036 7.8E-08 69.4 18.0 168 183-358 4-192 (438)
152 cd01128 rho_factor Transcripti 97.6 7.5E-05 1.6E-09 81.0 5.2 92 207-301 15-115 (249)
153 PRK14088 dnaA chromosomal repl 97.6 0.0021 4.6E-08 76.4 17.8 160 208-388 130-303 (440)
154 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0022 4.7E-08 82.2 18.7 171 161-359 168-363 (852)
155 KOG4579 Leucine-rich repeat (L 97.5 4.4E-06 9.6E-11 78.4 -4.0 104 734-844 29-135 (177)
156 PRK12422 chromosomal replicati 97.5 0.0056 1.2E-07 72.6 20.8 153 209-383 142-306 (445)
157 PRK07399 DNA polymerase III su 97.5 0.0077 1.7E-07 68.1 20.7 192 185-390 4-221 (314)
158 PRK06647 DNA polymerase III su 97.5 0.0087 1.9E-07 72.9 22.5 185 181-387 12-217 (563)
159 CHL00181 cbbX CbbX; Provisiona 97.5 0.003 6.4E-08 70.6 17.1 131 209-361 60-211 (287)
160 PF08937 DUF1863: MTH538 TIR-l 97.5 0.00011 2.3E-09 71.9 4.7 88 10-102 1-106 (130)
161 PRK07952 DNA replication prote 97.5 0.0026 5.5E-08 68.9 15.7 50 194-243 85-134 (244)
162 PRK14965 DNA polymerase III su 97.5 0.0069 1.5E-07 74.5 21.2 187 181-390 12-221 (576)
163 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.4E-09 56.3 3.5 41 809-850 1-41 (44)
164 CHL00176 ftsH cell division pr 97.5 0.0016 3.5E-08 80.2 15.4 173 183-382 181-386 (638)
165 COG1222 RPT1 ATP-dependent 26S 97.4 0.0015 3.2E-08 71.8 12.7 171 185-383 151-356 (406)
166 TIGR00767 rho transcription te 97.4 0.00019 4E-09 81.6 6.1 92 207-301 167-267 (415)
167 PRK05563 DNA polymerase III su 97.4 0.0038 8.2E-08 76.3 17.8 192 180-386 11-216 (559)
168 CHL00095 clpC Clp protease ATP 97.4 0.0017 3.7E-08 83.6 15.0 172 161-358 160-353 (821)
169 PRK14086 dnaA chromosomal repl 97.4 0.014 3E-07 70.6 21.4 152 209-384 315-482 (617)
170 PRK12377 putative replication 97.3 0.0049 1.1E-07 66.9 15.6 36 208-243 101-136 (248)
171 KOG0991 Replication factor C, 97.3 0.0025 5.5E-08 65.5 11.7 51 181-233 23-73 (333)
172 PRK08116 hypothetical protein; 97.3 0.0019 4.2E-08 71.3 12.1 102 209-327 115-221 (268)
173 TIGR01241 FtsH_fam ATP-depende 97.3 0.0031 6.6E-08 76.7 14.6 174 183-383 53-259 (495)
174 KOG2227 Pre-initiation complex 97.3 0.0076 1.7E-07 68.6 16.2 218 166-393 135-375 (529)
175 PF05621 TniB: Bacterial TniB 97.2 0.0073 1.6E-07 66.2 15.4 189 193-388 45-259 (302)
176 PRK11034 clpA ATP-dependent Cl 97.2 0.002 4.4E-08 80.8 12.8 65 162-233 168-232 (758)
177 PRK10865 protein disaggregatio 97.2 0.0042 9.1E-08 79.9 15.9 67 161-234 159-225 (857)
178 PF00004 AAA: ATPase family as 97.2 0.0022 4.8E-08 62.6 10.6 23 211-233 1-23 (132)
179 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0038 8.2E-08 80.6 15.0 67 162-235 155-221 (852)
180 KOG2982 Uncharacterized conser 97.2 6.8E-05 1.5E-09 79.4 -1.0 199 588-817 68-287 (418)
181 smart00382 AAA ATPases associa 97.1 0.00097 2.1E-08 65.7 6.9 34 209-242 3-36 (148)
182 PRK08181 transposase; Validate 97.1 0.0013 2.8E-08 72.3 8.3 35 209-243 107-141 (269)
183 COG1373 Predicted ATPase (AAA+ 97.1 0.0053 1.1E-07 72.0 13.8 136 192-355 24-163 (398)
184 TIGR01243 CDC48 AAA family ATP 97.1 0.003 6.6E-08 80.5 12.8 174 184-384 177-381 (733)
185 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0065 1.4E-07 72.6 13.9 154 184-361 227-407 (489)
186 PRK09183 transposase/IS protei 97.0 0.0011 2.5E-08 72.8 6.7 35 208-242 102-136 (259)
187 PF01695 IstB_IS21: IstB-like 97.0 0.0011 2.5E-08 68.3 6.2 36 208-243 47-82 (178)
188 TIGR00602 rad24 checkpoint pro 97.0 0.01 2.2E-07 72.8 15.2 54 180-233 79-135 (637)
189 TIGR03346 chaperone_ClpB ATP-d 97.0 0.033 7.2E-07 72.1 20.7 52 184-235 564-622 (852)
190 COG0593 DnaA ATPase involved i 97.0 0.019 4.2E-07 66.0 16.3 163 207-390 112-290 (408)
191 PRK11331 5-methylcytosine-spec 97.0 0.0032 6.9E-08 73.0 10.0 106 184-302 174-285 (459)
192 COG3267 ExeA Type II secretory 97.0 0.036 7.8E-07 58.7 16.6 180 206-392 49-247 (269)
193 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.7E-08 66.6 5.6 62 782-843 60-124 (233)
194 PF10443 RNA12: RNA12 protein; 96.9 0.16 3.5E-06 58.4 23.1 107 289-396 148-284 (431)
195 TIGR01243 CDC48 AAA family ATP 96.9 0.0074 1.6E-07 77.1 14.0 151 185-359 453-635 (733)
196 TIGR02640 gas_vesic_GvpN gas v 96.9 0.018 3.8E-07 63.8 15.3 25 209-233 22-46 (262)
197 PRK06526 transposase; Provisio 96.9 0.0012 2.5E-08 72.3 5.6 34 208-241 98-131 (254)
198 PRK08769 DNA polymerase III su 96.9 0.027 5.9E-07 63.5 16.5 95 288-391 112-209 (319)
199 PRK08058 DNA polymerase III su 96.9 0.018 3.9E-07 65.9 15.1 150 186-357 6-180 (329)
200 KOG0741 AAA+-type ATPase [Post 96.9 0.014 3E-07 67.1 13.6 132 206-358 536-685 (744)
201 TIGR02639 ClpA ATP-dependent C 96.9 0.089 1.9E-06 67.1 22.7 49 185-233 454-509 (731)
202 PRK10536 hypothetical protein; 96.8 0.0044 9.6E-08 66.6 9.1 134 185-326 55-212 (262)
203 KOG0730 AAA+-type ATPase [Post 96.8 0.018 3.8E-07 68.5 14.2 153 186-363 435-619 (693)
204 COG5238 RNA1 Ran GTPase-activa 96.8 0.0002 4.4E-09 74.9 -1.4 135 686-822 88-255 (388)
205 KOG1644 U2-associated snRNP A' 96.8 0.0019 4.2E-08 65.3 5.4 109 727-843 37-151 (233)
206 PRK10865 protein disaggregatio 96.8 0.035 7.6E-07 71.6 18.2 51 184-234 567-624 (857)
207 TIGR00763 lon ATP-dependent pr 96.7 0.048 1E-06 69.9 18.8 52 185-236 320-375 (775)
208 KOG0735 AAA+-type ATPase [Post 96.7 0.031 6.8E-07 66.6 15.2 163 208-390 431-616 (952)
209 KOG4579 Leucine-rich repeat (L 96.7 0.0002 4.3E-09 67.6 -2.0 86 592-685 54-141 (177)
210 KOG3665 ZYG-1-like serine/thre 96.7 0.00024 5.2E-09 88.1 -2.1 55 592-646 174-230 (699)
211 PRK06090 DNA polymerase III su 96.7 0.11 2.3E-06 58.8 19.0 91 289-390 108-201 (319)
212 PRK04132 replication factor C 96.7 0.11 2.5E-06 65.6 21.0 150 216-387 574-728 (846)
213 PRK06871 DNA polymerase III su 96.7 0.08 1.7E-06 59.9 17.9 92 288-387 106-200 (325)
214 PF08357 SEFIR: SEFIR domain; 96.7 0.0023 4.9E-08 64.4 5.1 64 11-74 2-70 (150)
215 PLN00020 ribulose bisphosphate 96.6 0.034 7.3E-07 62.6 14.4 154 206-385 146-333 (413)
216 PRK10787 DNA-binding ATP-depen 96.6 0.034 7.5E-07 70.6 16.3 184 156-359 284-506 (784)
217 PRK00771 signal recognition pa 96.6 0.036 7.7E-07 65.3 15.3 29 207-235 94-122 (437)
218 KOG3665 ZYG-1-like serine/thre 96.6 0.00054 1.2E-08 85.1 0.2 127 689-822 121-263 (699)
219 PRK11889 flhF flagellar biosyn 96.6 0.047 1E-06 62.3 15.4 36 207-242 240-275 (436)
220 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0045 9.8E-08 67.5 6.8 94 207-303 68-177 (274)
221 PRK07993 DNA polymerase III su 96.5 0.067 1.5E-06 61.1 16.6 168 193-387 10-201 (334)
222 PRK06921 hypothetical protein; 96.5 0.0049 1.1E-07 68.0 7.0 36 208-243 117-153 (266)
223 cd01131 PilT Pilus retraction 96.5 0.01 2.3E-07 62.6 9.2 110 209-330 2-112 (198)
224 KOG1514 Origin recognition com 96.5 0.058 1.3E-06 64.6 15.8 202 181-393 392-624 (767)
225 PRK06835 DNA replication prote 96.5 0.0082 1.8E-07 68.1 8.6 35 209-243 184-218 (329)
226 PRK07261 topology modulation p 96.5 0.009 2E-07 61.4 8.2 23 210-232 2-24 (171)
227 PF13177 DNA_pol3_delta2: DNA 96.4 0.031 6.6E-07 56.9 11.4 139 189-347 1-162 (162)
228 PRK11608 pspF phage shock prot 96.4 0.091 2E-06 60.1 16.5 47 185-231 6-52 (326)
229 KOG2739 Leucine-rich acidic nu 96.4 0.0025 5.5E-08 67.4 3.4 109 752-870 40-160 (260)
230 COG0542 clpA ATP-binding subun 96.3 0.038 8.3E-07 68.3 13.7 118 185-313 491-619 (786)
231 PRK06964 DNA polymerase III su 96.3 0.15 3.3E-06 58.1 17.6 91 289-390 132-225 (342)
232 cd01120 RecA-like_NTPases RecA 96.3 0.022 4.7E-07 57.8 9.8 34 210-243 1-34 (165)
233 PF07728 AAA_5: AAA domain (dy 96.3 0.0034 7.3E-08 62.2 3.6 22 211-232 2-23 (139)
234 KOG0733 Nuclear AAA ATPase (VC 96.3 0.13 2.8E-06 60.6 16.6 153 184-360 189-375 (802)
235 COG1223 Predicted ATPase (AAA+ 96.3 0.042 9E-07 57.8 11.4 174 185-383 121-318 (368)
236 TIGR01817 nifA Nif-specific re 96.2 0.077 1.7E-06 65.3 16.1 50 183-232 194-243 (534)
237 PF13207 AAA_17: AAA domain; P 96.2 0.0039 8.4E-08 60.0 3.7 23 210-232 1-23 (121)
238 COG0470 HolB ATPase involved i 96.2 0.055 1.2E-06 62.1 13.9 142 186-348 2-170 (325)
239 PRK08118 topology modulation p 96.2 0.012 2.6E-07 60.2 7.3 33 209-241 2-37 (167)
240 PF04665 Pox_A32: Poxvirus A32 96.2 0.0044 9.4E-08 66.3 3.9 34 210-243 15-48 (241)
241 CHL00095 clpC Clp protease ATP 96.2 0.043 9.3E-07 70.9 13.7 49 185-233 509-564 (821)
242 KOG0731 AAA+-type ATPase conta 96.2 0.099 2.1E-06 64.3 15.7 179 182-386 308-520 (774)
243 PRK14974 cell division protein 96.1 0.11 2.3E-06 59.2 15.1 29 207-235 139-167 (336)
244 TIGR02974 phageshock_pspF psp 96.1 0.1 2.2E-06 59.6 15.2 45 187-231 1-45 (329)
245 COG2607 Predicted ATPase (AAA+ 96.1 0.052 1.1E-06 56.7 11.2 122 182-331 57-188 (287)
246 TIGR00959 ffh signal recogniti 96.1 0.11 2.5E-06 60.9 15.7 26 208-233 99-124 (428)
247 PRK09361 radB DNA repair and r 96.1 0.016 3.5E-07 62.6 8.2 48 196-243 11-58 (225)
248 PRK12608 transcription termina 96.1 0.013 2.8E-07 66.5 7.5 91 208-301 133-232 (380)
249 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0055 1.2E-07 69.2 4.5 49 186-234 52-104 (361)
250 PRK10867 signal recognition pa 96.1 0.12 2.6E-06 60.7 15.8 29 207-235 99-127 (433)
251 PRK08939 primosomal protein Dn 96.0 0.019 4.1E-07 64.7 8.5 100 207-326 155-260 (306)
252 PRK10733 hflB ATP-dependent me 96.0 0.061 1.3E-06 67.3 13.6 152 186-361 153-337 (644)
253 PRK06696 uridine kinase; Valid 96.0 0.013 2.8E-07 63.2 6.7 46 190-235 3-49 (223)
254 COG5238 RNA1 Ran GTPase-activa 96.0 0.0019 4.1E-08 68.0 0.1 60 785-844 156-226 (388)
255 KOG0728 26S proteasome regulat 96.0 0.09 2E-06 54.8 12.0 150 187-360 148-332 (404)
256 COG1484 DnaC DNA replication p 96.0 0.014 3E-07 64.0 6.7 37 207-243 104-140 (254)
257 TIGR03345 VI_ClpV1 type VI sec 95.9 0.022 4.7E-07 73.2 9.4 50 185-234 566-622 (852)
258 cd01393 recA_like RecA is a b 95.9 0.028 6.1E-07 60.8 9.1 49 195-243 6-60 (226)
259 KOG2739 Leucine-rich acidic nu 95.9 0.0039 8.6E-08 65.9 1.9 105 592-700 44-153 (260)
260 PRK08699 DNA polymerase III su 95.8 0.11 2.3E-06 59.2 13.5 86 289-386 114-202 (325)
261 PRK07667 uridine kinase; Provi 95.8 0.017 3.7E-07 60.7 6.6 42 194-235 3-44 (193)
262 COG1618 Predicted nucleotide k 95.8 0.0094 2E-07 58.3 4.2 38 209-246 6-45 (179)
263 PRK15429 formate hydrogenlyase 95.8 0.16 3.5E-06 64.5 16.6 48 185-232 376-423 (686)
264 cd01394 radB RadB. The archaea 95.8 0.025 5.5E-07 60.8 8.1 49 195-243 6-54 (218)
265 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.053 1.1E-06 56.4 10.1 23 210-232 1-23 (183)
266 PF02562 PhoH: PhoH-like prote 95.8 0.019 4.2E-07 60.1 6.5 127 190-327 5-156 (205)
267 TIGR00064 ftsY signal recognit 95.8 0.055 1.2E-06 60.0 10.4 37 206-242 70-106 (272)
268 PHA00729 NTP-binding motif con 95.7 0.043 9.3E-07 58.2 9.0 27 207-233 16-42 (226)
269 PF07693 KAP_NTPase: KAP famil 95.7 0.63 1.4E-05 53.3 19.6 45 191-235 2-47 (325)
270 TIGR01425 SRP54_euk signal rec 95.7 0.23 5E-06 58.1 15.6 36 207-242 99-134 (429)
271 PF14532 Sigma54_activ_2: Sigm 95.7 0.012 2.5E-07 58.3 4.4 45 188-232 1-45 (138)
272 PRK12723 flagellar biosynthesi 95.6 0.12 2.5E-06 60.0 12.9 27 207-233 173-199 (388)
273 KOG2228 Origin recognition com 95.6 0.16 3.6E-06 55.7 13.0 175 183-358 22-218 (408)
274 COG2812 DnaX DNA polymerase II 95.6 0.4 8.6E-06 57.2 17.4 188 181-384 12-214 (515)
275 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.095 2E-06 52.6 10.5 116 209-327 3-138 (159)
276 cd01121 Sms Sms (bacterial rad 95.6 0.062 1.3E-06 62.2 10.6 49 195-243 69-117 (372)
277 PF00158 Sigma54_activat: Sigm 95.6 0.035 7.7E-07 56.7 7.6 45 187-231 1-45 (168)
278 COG0464 SpoVK ATPases of the A 95.6 0.095 2E-06 64.0 12.8 153 185-361 242-425 (494)
279 PRK11034 clpA ATP-dependent Cl 95.6 0.071 1.5E-06 67.3 11.7 49 185-233 458-513 (758)
280 TIGR02902 spore_lonB ATP-depen 95.6 0.16 3.4E-06 62.1 14.4 49 182-232 62-110 (531)
281 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.031 6.7E-07 60.8 7.5 48 196-243 7-60 (235)
282 PRK05022 anaerobic nitric oxid 95.5 0.29 6.2E-06 59.8 16.4 50 183-232 185-234 (509)
283 PRK12724 flagellar biosynthesi 95.5 0.21 4.6E-06 57.9 13.9 25 208-232 223-247 (432)
284 PRK04296 thymidine kinase; Pro 95.4 0.019 4.2E-07 60.1 5.2 109 209-327 3-116 (190)
285 COG4608 AppF ABC-type oligopep 95.4 0.044 9.5E-07 59.0 7.8 123 207-333 38-176 (268)
286 PF03215 Rad17: Rad17 cell cyc 95.4 0.21 4.4E-06 60.4 14.4 60 182-243 16-78 (519)
287 KOG0744 AAA+-type ATPase [Post 95.4 0.088 1.9E-06 57.3 10.0 36 208-243 177-216 (423)
288 KOG0727 26S proteasome regulat 95.4 0.14 3E-06 53.5 10.8 152 186-361 156-341 (408)
289 KOG1969 DNA replication checkp 95.3 0.038 8.2E-07 66.3 7.5 75 205-301 323-399 (877)
290 cd03214 ABC_Iron-Siderophores_ 95.3 0.055 1.2E-06 56.2 8.1 121 207-332 24-163 (180)
291 PF13671 AAA_33: AAA domain; P 95.3 0.078 1.7E-06 52.6 8.8 24 210-233 1-24 (143)
292 TIGR01650 PD_CobS cobaltochela 95.3 0.43 9.2E-06 53.7 15.2 52 181-236 41-92 (327)
293 COG0466 Lon ATP-dependent Lon 95.3 0.095 2.1E-06 63.2 10.6 159 184-359 322-508 (782)
294 PRK05541 adenylylsulfate kinas 95.2 0.023 4.9E-07 58.8 4.9 37 207-243 6-42 (176)
295 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.095 2.1E-06 52.2 9.1 106 207-333 25-133 (144)
296 PF01583 APS_kinase: Adenylyls 95.2 0.03 6.5E-07 55.9 5.3 35 209-243 3-37 (156)
297 KOG0734 AAA+-type ATPase conta 95.2 0.18 3.8E-06 58.5 11.9 148 185-359 304-484 (752)
298 cd00544 CobU Adenosylcobinamid 95.2 0.068 1.5E-06 54.6 8.0 79 211-298 2-82 (169)
299 COG0542 clpA ATP-binding subun 95.2 0.13 2.9E-06 63.7 11.8 155 185-359 170-346 (786)
300 PF00448 SRP54: SRP54-type pro 95.1 0.1 2.3E-06 54.7 9.4 57 209-269 2-58 (196)
301 PRK15455 PrkA family serine pr 95.1 0.026 5.7E-07 67.0 5.3 51 184-234 75-129 (644)
302 PF13238 AAA_18: AAA domain; P 95.1 0.018 3.9E-07 55.8 3.4 22 211-232 1-22 (129)
303 PRK10416 signal recognition pa 95.1 0.11 2.3E-06 58.9 10.0 29 207-235 113-141 (318)
304 KOG0729 26S proteasome regulat 95.0 0.072 1.6E-06 56.0 7.7 54 188-246 180-244 (435)
305 PF00406 ADK: Adenylate kinase 95.0 0.074 1.6E-06 53.4 7.8 88 213-309 1-94 (151)
306 PRK14722 flhF flagellar biosyn 95.0 0.2 4.4E-06 57.6 12.1 87 207-299 136-225 (374)
307 PTZ00088 adenylate kinase 1; P 95.0 0.037 8E-07 59.5 5.8 92 211-308 9-105 (229)
308 cd03216 ABC_Carb_Monos_I This 95.0 0.046 1E-06 55.7 6.2 119 207-332 25-147 (163)
309 KOG2123 Uncharacterized conser 95.0 0.0014 2.9E-08 69.2 -5.0 86 754-849 18-105 (388)
310 PF00485 PRK: Phosphoribulokin 94.9 0.022 4.8E-07 59.9 3.8 26 210-235 1-26 (194)
311 PRK11388 DNA-binding transcrip 94.9 0.42 9E-06 60.4 15.7 49 184-232 324-372 (638)
312 KOG0733 Nuclear AAA ATPase (VC 94.9 0.085 1.8E-06 62.0 8.5 129 208-360 545-693 (802)
313 TIGR01420 pilT_fam pilus retra 94.9 0.1 2.2E-06 60.1 9.4 109 208-327 122-230 (343)
314 cd03222 ABC_RNaseL_inhibitor T 94.8 0.12 2.6E-06 53.3 8.8 114 208-344 25-146 (177)
315 COG1066 Sms Predicted ATP-depe 94.8 0.084 1.8E-06 59.7 8.0 49 194-243 79-127 (456)
316 TIGR02237 recomb_radB DNA repa 94.8 0.067 1.4E-06 57.1 7.0 44 200-243 4-47 (209)
317 TIGR02858 spore_III_AA stage I 94.7 0.25 5.4E-06 54.5 11.5 116 206-331 109-233 (270)
318 PF13604 AAA_30: AAA domain; P 94.7 0.18 3.9E-06 53.1 10.0 115 194-328 7-132 (196)
319 COG0572 Udk Uridine kinase [Nu 94.7 0.033 7.2E-07 58.3 4.4 30 206-235 6-35 (218)
320 cd03115 SRP The signal recogni 94.7 0.12 2.5E-06 53.4 8.4 26 210-235 2-27 (173)
321 PRK12726 flagellar biosynthesi 94.7 0.61 1.3E-05 53.3 14.5 38 206-243 204-241 (407)
322 cd01858 NGP_1 NGP-1. Autoanti 94.6 0.26 5.5E-06 49.9 10.6 122 56-230 2-124 (157)
323 cd00983 recA RecA is a bacter 94.6 0.096 2.1E-06 59.0 8.1 49 195-243 41-90 (325)
324 PRK06067 flagellar accessory p 94.6 0.083 1.8E-06 57.5 7.5 49 195-243 12-60 (234)
325 PRK05800 cobU adenosylcobinami 94.6 0.071 1.5E-06 54.6 6.4 23 210-232 3-25 (170)
326 KOG0652 26S proteasome regulat 94.6 0.68 1.5E-05 48.8 13.4 185 186-394 172-391 (424)
327 PRK11823 DNA repair protein Ra 94.6 0.18 3.9E-06 60.2 10.7 50 194-243 66-115 (446)
328 KOG2035 Replication factor C, 94.6 2.7 5.8E-05 45.3 17.8 226 185-429 13-282 (351)
329 PRK08356 hypothetical protein; 94.6 0.17 3.8E-06 53.2 9.5 21 209-229 6-26 (195)
330 cd03247 ABCC_cytochrome_bd The 94.5 0.2 4.3E-06 51.9 9.8 35 207-242 27-61 (178)
331 PRK13531 regulatory ATPase Rav 94.5 0.06 1.3E-06 63.3 6.4 46 185-234 20-65 (498)
332 PRK09354 recA recombinase A; P 94.5 0.094 2E-06 59.5 7.6 50 194-243 45-95 (349)
333 TIGR02012 tigrfam_recA protein 94.5 0.086 1.9E-06 59.3 7.3 49 195-243 41-90 (321)
334 COG2884 FtsE Predicted ATPase 94.5 0.25 5.5E-06 50.1 9.6 58 275-334 141-204 (223)
335 cd02019 NK Nucleoside/nucleoti 94.5 0.031 6.8E-07 47.7 2.9 23 210-232 1-23 (69)
336 KOG1947 Leucine rich repeat pr 94.5 0.0088 1.9E-07 72.8 -0.7 13 834-846 403-415 (482)
337 KOG0726 26S proteasome regulat 94.5 0.17 3.6E-06 54.2 8.7 52 185-236 185-247 (440)
338 PF08433 KTI12: Chromatin asso 94.5 0.13 2.8E-06 56.9 8.4 27 209-235 2-28 (270)
339 KOG1947 Leucine rich repeat pr 94.4 0.006 1.3E-07 74.3 -2.3 89 635-726 187-281 (482)
340 PTZ00301 uridine kinase; Provi 94.4 0.036 7.7E-07 58.8 3.9 29 208-236 3-31 (210)
341 PRK05703 flhF flagellar biosyn 94.4 0.53 1.2E-05 55.7 14.0 36 208-243 221-258 (424)
342 COG0465 HflB ATP-dependent Zn 94.4 0.27 5.9E-06 59.3 11.5 150 183-360 148-334 (596)
343 PRK10923 glnG nitrogen regulat 94.4 0.78 1.7E-05 55.6 16.0 47 185-231 138-184 (469)
344 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.12 2.5E-06 55.8 7.6 51 281-333 149-205 (254)
345 cd01129 PulE-GspE PulE/GspE Th 94.4 0.2 4.3E-06 55.4 9.7 102 193-309 68-169 (264)
346 cd03223 ABCD_peroxisomal_ALDP 94.4 0.12 2.5E-06 52.9 7.5 127 207-343 26-160 (166)
347 TIGR03574 selen_PSTK L-seryl-t 94.4 0.12 2.6E-06 56.8 8.0 26 210-235 1-26 (249)
348 cd03238 ABC_UvrA The excision 94.3 0.12 2.7E-06 53.1 7.5 24 207-230 20-43 (176)
349 PRK10820 DNA-binding transcrip 94.3 1.2 2.7E-05 54.4 17.4 50 182-231 201-250 (520)
350 PRK06762 hypothetical protein; 94.3 0.037 8E-07 56.6 3.6 24 209-232 3-26 (166)
351 PRK08233 hypothetical protein; 94.3 0.033 7.2E-07 57.8 3.3 26 208-233 3-28 (182)
352 KOG2004 Mitochondrial ATP-depe 94.3 0.049 1.1E-06 65.1 4.8 52 186-237 412-467 (906)
353 PRK03839 putative kinase; Prov 94.2 0.034 7.3E-07 57.8 3.2 24 210-233 2-25 (180)
354 PRK04040 adenylate kinase; Pro 94.2 0.044 9.5E-07 57.2 4.0 25 209-233 3-27 (188)
355 PRK05480 uridine/cytidine kina 94.2 0.041 8.9E-07 58.7 3.9 27 206-232 4-30 (209)
356 TIGR00416 sms DNA repair prote 94.2 0.12 2.6E-06 61.6 8.2 50 194-243 80-129 (454)
357 PF07726 AAA_3: ATPase family 94.2 0.029 6.3E-07 53.5 2.3 28 211-238 2-29 (131)
358 PRK00625 shikimate kinase; Pro 94.1 0.036 7.7E-07 56.9 3.1 24 210-233 2-25 (173)
359 PRK00279 adk adenylate kinase; 94.1 0.15 3.2E-06 54.7 8.0 23 210-232 2-24 (215)
360 TIGR00235 udk uridine kinase. 94.0 0.048 1E-06 58.1 3.9 28 206-233 4-31 (207)
361 PF00910 RNA_helicase: RNA hel 94.0 0.035 7.7E-07 52.1 2.5 26 211-236 1-26 (107)
362 PRK09270 nucleoside triphospha 94.0 0.08 1.7E-06 57.3 5.6 31 205-235 30-60 (229)
363 KOG0066 eIF2-interacting prote 94.0 0.86 1.9E-05 51.5 13.3 32 200-231 605-636 (807)
364 PF00437 T2SE: Type II/IV secr 94.0 0.053 1.2E-06 60.4 4.3 127 185-326 104-231 (270)
365 COG0488 Uup ATPase components 93.9 0.23 5E-06 60.0 9.8 129 208-345 348-511 (530)
366 PRK14528 adenylate kinase; Pro 93.9 0.16 3.6E-06 52.9 7.6 24 209-232 2-25 (186)
367 PRK12727 flagellar biosynthesi 93.9 0.48 1E-05 56.5 12.1 29 207-235 349-377 (559)
368 COG0468 RecA RecA/RadA recombi 93.9 0.16 3.4E-06 56.0 7.5 57 197-258 49-105 (279)
369 cd01122 GP4d_helicase GP4d_hel 93.9 0.38 8.1E-06 53.6 10.9 55 206-267 28-83 (271)
370 cd03228 ABCC_MRP_Like The MRP 93.8 0.22 4.7E-06 51.2 8.2 121 207-343 27-167 (171)
371 COG0563 Adk Adenylate kinase a 93.8 0.1 2.2E-06 53.8 5.7 23 210-232 2-24 (178)
372 KOG1970 Checkpoint RAD17-RFC c 93.8 0.24 5.3E-06 57.9 9.0 42 191-232 88-134 (634)
373 PRK10463 hydrogenase nickel in 93.7 0.061 1.3E-06 59.3 4.1 36 206-241 102-137 (290)
374 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.13 2.8E-06 52.1 6.2 123 208-343 25-153 (157)
375 TIGR00150 HI0065_YjeE ATPase, 93.7 0.088 1.9E-06 51.1 4.7 39 194-232 8-46 (133)
376 TIGR01360 aden_kin_iso1 adenyl 93.7 0.054 1.2E-06 56.6 3.5 26 207-232 2-27 (188)
377 PRK00131 aroK shikimate kinase 93.7 0.051 1.1E-06 55.9 3.3 26 208-233 4-29 (175)
378 COG3910 Predicted ATPase [Gene 93.7 0.5 1.1E-05 47.8 9.8 131 207-346 36-204 (233)
379 KOG2123 Uncharacterized conser 93.6 0.005 1.1E-07 65.1 -4.3 75 591-665 41-123 (388)
380 KOG0743 AAA+-type ATPase [Post 93.6 0.76 1.6E-05 53.0 12.4 153 208-397 235-417 (457)
381 cd03237 ABC_RNaseL_inhibitor_d 93.6 0.26 5.7E-06 53.9 8.7 25 208-232 25-49 (246)
382 PRK00889 adenylylsulfate kinas 93.6 0.098 2.1E-06 54.0 5.1 35 208-242 4-38 (175)
383 COG2842 Uncharacterized ATPase 93.5 2.2 4.8E-05 46.7 15.3 128 176-314 63-192 (297)
384 PRK15115 response regulator Gl 93.5 2.5 5.4E-05 50.8 17.9 48 185-232 134-181 (444)
385 KOG0651 26S proteasome regulat 93.5 0.18 3.9E-06 54.7 6.9 30 207-236 165-194 (388)
386 PF06068 TIP49: TIP49 C-termin 93.4 0.15 3.3E-06 57.3 6.6 60 182-241 21-83 (398)
387 PRK13947 shikimate kinase; Pro 93.4 0.055 1.2E-06 55.6 3.0 25 210-234 3-27 (171)
388 cd03230 ABC_DR_subfamily_A Thi 93.4 0.24 5.2E-06 51.0 7.7 116 207-333 25-161 (173)
389 cd02028 UMPK_like Uridine mono 93.4 0.086 1.9E-06 54.6 4.4 26 210-235 1-26 (179)
390 COG1224 TIP49 DNA helicase TIP 93.4 0.21 4.5E-06 55.3 7.3 57 181-237 35-94 (450)
391 cd03240 ABC_Rad50 The catalyti 93.4 0.35 7.7E-06 51.2 9.1 20 210-229 24-43 (204)
392 PRK06547 hypothetical protein; 93.4 0.073 1.6E-06 54.6 3.7 27 206-232 13-39 (172)
393 TIGR00708 cobA cob(I)alamin ad 93.4 0.47 1E-05 48.2 9.4 116 208-327 5-140 (173)
394 COG5635 Predicted NTPase (NACH 93.3 0.78 1.7E-05 59.4 13.9 195 209-411 223-449 (824)
395 PF10137 TIR-like: Predicted n 93.3 0.2 4.2E-06 48.1 6.3 59 12-73 2-61 (125)
396 cd01125 repA Hexameric Replica 93.3 0.67 1.5E-05 50.5 11.5 24 210-233 3-26 (239)
397 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.12 2.6E-06 57.1 5.5 41 203-243 31-71 (259)
398 TIGR03499 FlhF flagellar biosy 93.3 0.28 6.1E-06 54.8 8.5 29 207-235 193-221 (282)
399 TIGR01818 ntrC nitrogen regula 93.3 1.9 4E-05 52.3 16.4 48 185-232 134-181 (463)
400 TIGR01351 adk adenylate kinase 93.3 0.18 4E-06 53.7 6.8 22 211-232 2-23 (210)
401 PRK14531 adenylate kinase; Pro 93.3 0.31 6.8E-06 50.7 8.4 24 209-232 3-26 (183)
402 cd03246 ABCC_Protease_Secretio 93.3 0.16 3.5E-06 52.3 6.1 125 208-343 28-168 (173)
403 PRK03846 adenylylsulfate kinas 93.2 0.12 2.6E-06 54.6 5.2 37 206-242 22-58 (198)
404 cd01428 ADK Adenylate kinase ( 93.2 0.42 9E-06 50.2 9.4 22 211-232 2-23 (194)
405 KOG0736 Peroxisome assembly fa 93.2 2.2 4.8E-05 52.2 15.8 100 179-300 665-775 (953)
406 PRK01184 hypothetical protein; 93.2 0.13 2.9E-06 53.5 5.5 21 209-230 2-22 (184)
407 PRK14529 adenylate kinase; Pro 93.2 0.27 5.8E-06 52.6 7.7 92 211-308 3-96 (223)
408 KOG1051 Chaperone HSP104 and r 93.2 0.96 2.1E-05 57.2 13.5 106 185-303 562-674 (898)
409 COG1136 SalX ABC-type antimicr 93.1 0.23 5E-06 52.7 7.1 61 279-344 150-216 (226)
410 COG1428 Deoxynucleoside kinase 93.1 0.07 1.5E-06 55.2 3.1 26 208-233 4-29 (216)
411 cd02027 APSK Adenosine 5'-phos 93.1 0.45 9.8E-06 47.6 8.9 24 210-233 1-24 (149)
412 cd00227 CPT Chloramphenicol (C 93.1 0.074 1.6E-06 54.9 3.3 25 209-233 3-27 (175)
413 COG0467 RAD55 RecA-superfamily 93.1 0.21 4.6E-06 55.2 7.1 45 199-243 14-58 (260)
414 PF10236 DAP3: Mitochondrial r 93.0 1.4 3.1E-05 49.8 13.7 48 340-387 258-306 (309)
415 TIGR03600 phage_DnaB phage rep 93.0 1.2 2.5E-05 53.2 13.6 74 187-268 174-248 (421)
416 PRK09519 recA DNA recombinatio 92.9 0.38 8.3E-06 60.2 9.7 50 194-243 45-95 (790)
417 PRK14526 adenylate kinase; Pro 92.9 0.26 5.6E-06 52.4 7.2 22 211-232 3-24 (211)
418 TIGR02329 propionate_PrpR prop 92.9 2.8 6.1E-05 51.0 16.9 48 184-231 211-258 (526)
419 COG0003 ArsA Predicted ATPase 92.9 0.16 3.5E-06 57.2 5.8 36 208-243 2-37 (322)
420 cd01857 HSR1_MMR1 HSR1/MMR1. 92.9 0.81 1.8E-05 45.2 10.3 51 54-106 3-53 (141)
421 PRK07132 DNA polymerase III su 92.9 8.5 0.00018 43.2 19.4 168 194-390 5-185 (299)
422 PF03205 MobB: Molybdopterin g 92.9 0.14 3.1E-06 50.5 4.7 35 209-243 1-36 (140)
423 PRK12597 F0F1 ATP synthase sub 92.8 0.55 1.2E-05 55.6 10.3 36 207-242 142-178 (461)
424 PF00560 LRR_1: Leucine Rich R 92.8 0.037 8E-07 35.4 0.4 18 811-828 2-19 (22)
425 KOG0780 Signal recognition par 92.8 1.4 3E-05 49.5 12.5 38 206-243 99-136 (483)
426 COG0488 Uup ATPase components 92.8 0.2 4.4E-06 60.5 6.8 63 278-345 160-225 (530)
427 KOG3928 Mitochondrial ribosome 92.7 1.6 3.4E-05 49.6 13.0 54 338-394 403-460 (461)
428 cd02025 PanK Pantothenate kina 92.7 0.078 1.7E-06 56.9 2.9 24 210-233 1-24 (220)
429 PF03308 ArgK: ArgK protein; 92.7 0.29 6.3E-06 52.6 7.0 41 195-235 16-56 (266)
430 cd02024 NRK1 Nicotinamide ribo 92.7 0.077 1.7E-06 55.0 2.7 23 210-232 1-23 (187)
431 PRK13949 shikimate kinase; Pro 92.6 0.086 1.9E-06 54.0 3.0 24 210-233 3-26 (169)
432 cd03232 ABC_PDR_domain2 The pl 92.6 0.44 9.6E-06 50.0 8.5 25 207-231 32-56 (192)
433 COG2401 ABC-type ATPase fused 92.6 0.24 5.2E-06 55.8 6.4 47 187-233 373-434 (593)
434 PRK06217 hypothetical protein; 92.5 0.085 1.8E-06 54.9 2.9 24 210-233 3-26 (183)
435 TIGR00390 hslU ATP-dependent p 92.5 0.17 3.7E-06 58.4 5.4 51 186-236 13-75 (441)
436 COG1120 FepC ABC-type cobalami 92.5 0.54 1.2E-05 51.0 8.9 25 206-230 26-50 (258)
437 cd03281 ABC_MSH5_euk MutS5 hom 92.5 0.11 2.3E-06 55.6 3.5 23 208-230 29-51 (213)
438 TIGR03877 thermo_KaiC_1 KaiC d 92.5 0.23 4.9E-06 54.1 6.2 49 195-243 8-56 (237)
439 cd02020 CMPK Cytidine monophos 92.5 0.087 1.9E-06 52.4 2.8 23 210-232 1-23 (147)
440 PRK05439 pantothenate kinase; 92.5 0.18 3.8E-06 56.6 5.4 30 205-234 83-112 (311)
441 cd02023 UMPK Uridine monophosp 92.5 0.086 1.9E-06 55.7 2.8 23 210-232 1-23 (198)
442 cd03283 ABC_MutS-like MutS-lik 92.4 0.88 1.9E-05 48.0 10.4 24 209-232 26-49 (199)
443 PRK09280 F0F1 ATP synthase sub 92.4 0.26 5.7E-06 58.0 6.8 92 207-301 143-250 (463)
444 TIGR02322 phosphon_PhnN phosph 92.3 0.1 2.2E-06 54.1 3.2 25 209-233 2-26 (179)
445 TIGR02788 VirB11 P-type DNA tr 92.3 0.23 5.1E-06 56.3 6.3 111 207-328 143-254 (308)
446 PRK05986 cob(I)alamin adenolsy 92.3 0.66 1.4E-05 47.9 8.9 118 207-327 21-158 (191)
447 COG1102 Cmk Cytidylate kinase 92.3 0.1 2.2E-06 51.3 2.8 24 210-233 2-25 (179)
448 cd01130 VirB11-like_ATPase Typ 92.3 0.12 2.6E-06 53.9 3.7 92 208-308 25-119 (186)
449 cd00464 SK Shikimate kinase (S 92.3 0.1 2.2E-06 52.4 3.1 22 211-232 2-23 (154)
450 PF03266 NTPase_1: NTPase; In 92.3 0.11 2.4E-06 53.0 3.3 24 211-234 2-25 (168)
451 PRK13543 cytochrome c biogenes 92.2 0.61 1.3E-05 49.9 9.1 25 207-231 36-60 (214)
452 TIGR03881 KaiC_arch_4 KaiC dom 92.2 0.26 5.6E-06 53.4 6.3 49 195-243 7-55 (229)
453 PRK05201 hslU ATP-dependent pr 92.2 0.21 4.6E-06 57.7 5.7 51 186-236 16-78 (443)
454 TIGR02915 PEP_resp_reg putativ 92.2 2.4 5.2E-05 51.0 15.3 47 185-231 139-185 (445)
455 KOG1532 GTPase XAB1, interacts 92.1 0.17 3.6E-06 53.8 4.3 39 206-245 17-55 (366)
456 COG1875 NYN ribonuclease and A 92.1 0.52 1.1E-05 52.6 8.2 118 205-326 242-387 (436)
457 cd03233 ABC_PDR_domain1 The pl 92.1 0.62 1.3E-05 49.3 8.9 27 207-233 32-58 (202)
458 PRK10751 molybdopterin-guanine 92.1 0.17 3.6E-06 51.7 4.3 29 207-235 5-33 (173)
459 PRK13948 shikimate kinase; Pro 92.1 0.11 2.4E-06 53.7 3.1 27 207-233 9-35 (182)
460 TIGR02525 plasmid_TraJ plasmid 92.1 0.26 5.5E-06 57.0 6.3 93 209-308 150-244 (372)
461 PRK06731 flhF flagellar biosyn 92.1 0.96 2.1E-05 49.9 10.4 36 208-243 75-110 (270)
462 KOG0927 Predicted transporter 92.1 0.34 7.3E-06 56.7 7.0 25 207-231 100-124 (614)
463 cd02021 GntK Gluconate kinase 92.1 0.1 2.2E-06 52.3 2.7 23 210-232 1-23 (150)
464 PRK13946 shikimate kinase; Pro 92.0 0.11 2.3E-06 54.3 2.9 26 208-233 10-35 (184)
465 TIGR02782 TrbB_P P-type conjug 92.0 0.27 6E-06 55.3 6.3 87 209-307 133-222 (299)
466 COG3640 CooC CO dehydrogenase 92.0 0.26 5.7E-06 51.7 5.5 26 210-235 2-27 (255)
467 PRK04301 radA DNA repair and r 91.9 0.38 8.3E-06 54.9 7.5 61 195-260 89-155 (317)
468 KOG0739 AAA+-type ATPase [Post 91.9 1.6 3.5E-05 47.3 11.3 49 185-233 133-191 (439)
469 cd00071 GMPK Guanosine monopho 91.9 0.097 2.1E-06 51.6 2.2 26 210-235 1-26 (137)
470 KOG0730 AAA+-type ATPase [Post 91.9 1.2 2.6E-05 53.6 11.4 170 186-383 185-385 (693)
471 TIGR01039 atpD ATP synthase, F 91.9 0.37 8.1E-06 56.5 7.3 93 207-302 142-250 (461)
472 COG0529 CysC Adenylylsulfate k 91.9 0.24 5.2E-06 49.6 4.9 36 207-242 22-57 (197)
473 COG0396 sufC Cysteine desulfur 91.8 0.41 8.9E-06 50.2 6.7 61 276-336 149-213 (251)
474 PLN02674 adenylate kinase 91.8 0.6 1.3E-05 50.6 8.3 24 209-232 32-55 (244)
475 cd01135 V_A-ATPase_B V/A-type 91.8 0.79 1.7E-05 50.2 9.2 92 208-303 69-180 (276)
476 COG3854 SpoIIIAA ncharacterize 91.8 0.59 1.3E-05 48.8 7.6 108 209-325 138-251 (308)
477 PRK15453 phosphoribulokinase; 91.7 0.24 5.2E-06 54.2 5.1 28 207-234 4-31 (290)
478 PLN02459 probable adenylate ki 91.7 0.24 5.1E-06 54.0 5.1 94 210-309 31-129 (261)
479 COG2274 SunT ABC-type bacterio 91.7 0.27 5.9E-06 61.6 6.3 23 208-230 499-521 (709)
480 TIGR00176 mobB molybdopterin-g 91.7 0.19 4.2E-06 50.5 4.1 26 210-235 1-26 (155)
481 PF13481 AAA_25: AAA domain; P 91.6 0.29 6.4E-06 51.3 5.7 26 209-234 33-58 (193)
482 PRK14530 adenylate kinase; Pro 91.6 0.14 3E-06 54.9 3.2 23 210-232 5-27 (215)
483 PRK05537 bifunctional sulfate 91.6 0.29 6.3E-06 60.0 6.3 50 185-234 369-418 (568)
484 PRK14723 flhF flagellar biosyn 91.6 1.6 3.5E-05 54.7 12.6 26 208-233 185-210 (767)
485 COG0703 AroK Shikimate kinase 91.6 0.14 3E-06 51.7 2.9 28 209-236 3-30 (172)
486 cd03243 ABC_MutS_homologs The 91.5 1 2.2E-05 47.7 9.7 22 209-230 30-51 (202)
487 PRK14493 putative bifunctional 91.5 0.21 4.6E-06 55.2 4.6 34 209-243 2-35 (274)
488 PF00625 Guanylate_kin: Guanyl 91.5 0.16 3.6E-06 52.8 3.6 35 208-242 2-36 (183)
489 PRK13975 thymidylate kinase; P 91.5 0.15 3.4E-06 53.6 3.5 26 209-234 3-28 (196)
490 COG1936 Predicted nucleotide k 91.5 0.13 2.8E-06 51.4 2.6 20 210-229 2-21 (180)
491 PRK05057 aroK shikimate kinase 91.5 0.14 3E-06 52.7 2.9 26 208-233 4-29 (172)
492 COG4618 ArpD ABC-type protease 91.5 0.46 1E-05 55.3 7.3 22 209-230 363-384 (580)
493 PRK12339 2-phosphoglycerate ki 91.5 0.17 3.6E-06 53.2 3.6 25 208-232 3-27 (197)
494 PRK05973 replicative DNA helic 91.4 0.32 6.9E-06 52.4 5.7 38 206-243 62-99 (237)
495 KOG0738 AAA+-type ATPase [Post 91.4 0.43 9.3E-06 53.5 6.6 73 157-234 189-271 (491)
496 PRK13765 ATP-dependent proteas 91.4 0.27 5.8E-06 60.8 5.8 77 180-266 26-103 (637)
497 PF00560 LRR_1: Leucine Rich R 91.4 0.056 1.2E-06 34.5 -0.0 21 787-807 1-21 (22)
498 PF02374 ArsA_ATPase: Anion-tr 91.4 0.25 5.5E-06 55.7 5.2 35 209-243 2-36 (305)
499 CHL00206 ycf2 Ycf2; Provisiona 91.3 2 4.4E-05 58.1 13.6 27 206-232 1628-1654(2281)
500 TIGR02236 recomb_radA DNA repa 91.3 0.53 1.1E-05 53.6 7.7 60 195-259 82-147 (310)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.5e-141 Score=1384.51 Aligned_cols=1064 Identities=34% Similarity=0.530 Sum_probs=856.7
Q ss_pred CCCCC---CCCCccEEeccccccccCchHHHHHHHHhcCCCcEEecCCCCCCCcchHHHHHHhhccceEEEEeccCcccC
Q 046888 1 MASSS---SSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALLNAIEGSKISVIIFSKDYASS 77 (1170)
Q Consensus 1 m~~~~---~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s 77 (1170)
||||| +.|+||||+||||+|+|++|++||++||.++||.+|+|+++++|+.|.+++.+||++|+++|||||++||+|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 56543 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhhhcCCcEEEEEEeeeCccccccccccHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCcccC-C
Q 046888 78 KWCPNELVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAETVQKWRDVMTQTSYLSGHESTK-I 156 (1170)
Q Consensus 78 ~wcl~El~~~~~~~~~~~~~v~pif~~v~ps~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~-~ 156 (1170)
+|||+||++|++|+++++++|+||||+|||+|||+|+|.||+||++++++ ...+++++||+||++||+++|| +.. .
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~-~~~~~ 157 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGY-HSQNW 157 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCce-ecCCC
Confidence 99999999999999999999999999999999999999999999998875 3568899999999999999999 554 4
Q ss_pred CchhHHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 157 RPEAMLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 157 ~~e~~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
++|+++|++||++|.+++ +. +++...+++|||+.++++|.++|..+.+++++|+||||||+||||||+++|+++..+|
T Consensus 158 ~~E~~~i~~Iv~~v~~~l-~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKL-NL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred CCHHHHHHHHHHHHHHhh-cc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 899999999999999999 55 6677888999999999999999988888899999999999999999999999999999
Q ss_pred CceEEEEechhh-hh---c-----Cc-CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHH
Q 046888 237 EGKCFIENVREE-IE---N-----GV-GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKY 306 (1170)
Q Consensus 237 ~~~~~~~~~~~~-~~---~-----~~-~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~ 306 (1170)
++.+|+.+..-. .. . .+ ....++++++.++....... ... ...++++++++|+||||||||+.++++.
T Consensus 236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~-~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~ 313 (1153)
T PLN03210 236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK-IYH-LGAMEERLKHRKVLIFIDDLDDQDVLDA 313 (1153)
T ss_pred CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc-cCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHH
Confidence 999998642110 00 0 11 12356677777776543321 111 1456688999999999999999999999
Q ss_pred HHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 307 LVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 307 l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
+.+...|+++||+||||||+++++..++++ ++|+|+.|+.++|++||+++||++..+++++++++++|+++|+|+|||
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 999888999999999999999999888777 899999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCH-HHHHHHhhcccccCCCCHHHHHHHHhhCCCCHHH
Q 046888 387 LEVLGSSLQQKSKQDWENVLDNLKQISGASRIYKLLRISYEELTF-EEKSIFLDIACFFKGEGKDRVLMLLHDRQYNVTQ 465 (1170)
Q Consensus 387 l~~lg~~L~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~l~~~~~~~~~~ 465 (1170)
++++|+.|++++..+|+.++++++..++ ..|.++|++||++|++ .+|.||+++||||.+.+.+.+..+++.+++.++.
T Consensus 392 l~vlgs~L~~k~~~~W~~~l~~L~~~~~-~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~ 470 (1153)
T PLN03210 392 LNVLGSYLRGRDKEDWMDMLPRLRNGLD-GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNI 470 (1153)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCcc-HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchh
Confidence 9999999999999999999999998777 7899999999999976 5999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEeCCeEEehHHHHHHHHHHHhhhcccCCCCcceeecccccccccccccccccccceeccccccccccc
Q 046888 466 ALSVLIDKSLIIEHNNRLHMHELLQEMGQEIVRQEDIKKPGKRSRLWHHKDVRHVLKHNEGTDAIEGIFLNLSKIKGINL 545 (1170)
Q Consensus 466 ~l~~L~~~sLi~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~srl~~~~~i~~~l~~~~~~~~i~~i~l~l~~~~~l~l 545 (1170)
+++.|+++|||+..+++++|||++|+||++++++++ .+|++|+|+|.++++++++..+++++.+++|++|++....+.+
T Consensus 471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 999999999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCc
Q 046888 546 NSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKV 625 (1170)
Q Consensus 546 ~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i 625 (1170)
+.++|.+|++|+.|+++.+.. ........++++++..+|++||+|+|.+|+++.+|..|.+.+|++|+|++|.+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~------~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKW------DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL 623 (1153)
T ss_pred cHHHHhcCccccEEEEecccc------cccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc
Confidence 999999999999999975431 01122456788899999999999999999999999999999999999999999
Q ss_pred ccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeeccccccccc
Q 046888 626 VQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR 705 (1170)
Q Consensus 626 ~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 705 (1170)
+.+|.++..+++|+.|+|++|..+..+|+++.+++|+.|+|++|..+ ..+|.+++++++|+.|++++|..+..
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-------~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-------VELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-------cccchhhhccCCCCEEeCCCCCCcCc
Confidence 99999999999999999999998999999999999999999999888 89999999999999999999999999
Q ss_pred ccccccCCCcccEEecCCCCCchhhh---ccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCcccc
Q 046888 706 VSTSICKLKSLIWLCLNECLNLESFL---ESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLL 782 (1170)
Q Consensus 706 lp~~i~~L~~L~~L~l~~c~~l~~~~---~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l 782 (1170)
+|..+ ++++|+.|++++|..+..+| .+|+.|++++|.+..+|..+ .+++|+.|.+.++...........+++...
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhh
Confidence 99877 89999999999999888775 46999999999999999876 688999999887654322111122222223
Q ss_pred CCCCCCCEEeCCCCC-CCCCCcccCCCCCCCEEECcCC-CCccccccccCCCCCCEEEecCCCCCCCCCCCccccceecc
Q 046888 783 SGLFSLNWLNLNNCA-LTAIPEEIGCLPSLEWLELREN-NFESLPVSIKQLSRLKRLDLSNCSMLQSIPELPPSLKWLQA 860 (1170)
Q Consensus 783 ~~l~~L~~L~L~~~~-l~~ip~~l~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~i 860 (1170)
...++|+.|+|++|. +..+|..++++++|+.|+|++| ++..+|..+ .+++|+.|+|++|..++.+|..+.+|+.|++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeEC
Confidence 445789999999985 5569999999999999999998 678898766 7899999999999999999888888888877
Q ss_pred ccccccCCCCCCCCCchhhhhhhhhccccccCCCcccccCCCcchhhh----hhhhhhhhhHhhhhhhhhHHHHH--HH-
Q 046888 861 GNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYDDEVEDVNGSSSIRFL----FMDCIKMYQEESKNNLAESQLRI--QH- 933 (1170)
Q Consensus 861 ~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~l~~~~~~~~~l~~l----~~~C~~l~~~~~~~~~~~~~~~~--~~- 933 (1170)
.+. .++.+|. .+ ..+..|+.|.+.+|+.+...+.....+..+ |.+|.++......+.- .+.... ..
T Consensus 854 s~n-~i~~iP~---si--~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~-~~~~~~~~n~~ 926 (1153)
T PLN03210 854 SRT-GIEEVPW---WI--EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSP-SEVAMATDNIH 926 (1153)
T ss_pred CCC-CCccChH---HH--hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCc-hhhhhhccccc
Confidence 653 3444432 22 123456777777777777665443333332 6677766432211100 000000 00
Q ss_pred hhhhh-hhhhhhHHhhhcccccccchhhhhhhhhhhHHHHHHHHHhhccCCCeEEcCCCCCCCCccccCCCceEE-EEcC
Q 046888 934 MAVTS-LRLFYEFQVIRNSLSFAPLSLYLYLRFVASQIMIFILQECCKLRGPILISPGSEIPEWFSNQSAGSEIT-LQLP 1011 (1170)
Q Consensus 934 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~iP~Wf~~q~~g~si~-~~lp 1011 (1170)
....+ ..+.+..+..... .+.++.-. ....+++||+++|+||.||+.|++++ |.+|
T Consensus 927 ~~~p~~~~l~f~nC~~L~~--------------------~a~l~~~~--~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~ 984 (1153)
T PLN03210 927 SKLPSTVCINFINCFNLDQ--------------------EALLQQQS--IFKQLILSGEEVPSYFTHRTTGASLTNIPLL 984 (1153)
T ss_pred ccCCchhccccccccCCCc--------------------hhhhcccc--cceEEECCCccCchhccCCcccceeeeeccC
Confidence 00000 0000000000000 00000000 11257899999999999999999998 9999
Q ss_pred CCCC-CCcccEEEEEEeeccccccCCCCcccccccccccc-cCcccccccccceEEEEc-ccccccccccCCCCCC----
Q 046888 1012 QHCC-QNLIGFALCVVLVSCDIEWSGFNTDYRYSFEMTTL-SGRKHFRRWCFKTLWFDY-PMTKIDHVALGFNPCG---- 1084 (1170)
Q Consensus 1012 ~~~~-~~~~gfa~c~v~~~~~~~~~~~~~~~~~~~~~~~~-sd~~~~~~~~~~h~~~~y-~~~~~~~~~~~~~~~~---- 1084 (1170)
+.|+ ..|+||++|+|+ +|..........+ .-..|... .+..+++..+..|+|+.| +..++. .|+.+.
T Consensus 985 ~~~~~~~~~~f~~c~v~-~~~~~~~~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 1058 (1153)
T PLN03210 985 HISPCQPFFRFRACAVV-DSESFFIISVSFD-IQVCCRFIDRLGNHFDSPYQPHVFSVTKKGSHLV----IFDCCFPLNE 1058 (1153)
T ss_pred CcccCCCccceEEEEEE-ecCccccCCCcee-EEEEEEEECCCCCccccCCCceeEeeeccccceE----Eecccccccc
Confidence 9998 679999999996 4332111110000 00011110 111233444566999999 655442 222211
Q ss_pred -CC-CCCCCCceEEEEEEeecc--ceEEEEecceeeecCCCCCCCC
Q 046888 1085 -NV-GFPDDNHHTTVSFDFFSI--FSKVSRCGVCPVYANTKGTNPS 1126 (1170)
Q Consensus 1085 -~~-~~~~~~~~~~~s~~~~~~--~~~v~~cG~~~vy~~~~~~~~~ 1126 (1170)
+. .+...+.|..+.|++... ..+||+||++++|..+.-.+++
T Consensus 1059 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~~~~ 1104 (1153)
T PLN03210 1059 DNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLNNTL 1104 (1153)
T ss_pred cccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcccCC
Confidence 11 111124455666655443 3599999999999776444433
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-56 Score=550.48 Aligned_cols=584 Identities=24% Similarity=0.292 Sum_probs=401.8
Q ss_pred ccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH---HhccCCceEEEEechhhhhcCcCHHHHHHHHHH
Q 046888 188 VGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ---ISNEFEGKCFIENVREEIENGVGLVHLHKQVVS 264 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1170)
||.+..++++.+.|..++. ++++|+||||+||||||+.++|+ ++.+|+.++|+. +++.+....++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-----VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-----VSKEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-----EcccccHHhHHHHHHH
Confidence 9999999999999875543 99999999999999999999993 679999999999 8999999999999999
Q ss_pred HHhcCcccC---CCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHH-hCCCCcce
Q 046888 265 LLLGERLET---GGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRK-QGVKDEHV 340 (1170)
Q Consensus 265 ~l~~~~~~~---~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~ 340 (1170)
.+....... ..+.++..+.+.|+++|++|||||||+...|+.+...++....||+|++|||++.|+.. ++++ ..
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--YP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--cc
Confidence 988754433 23567777889999999999999999999999999999988889999999999999988 7776 89
Q ss_pred EeecCCCHhHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhCCChhHHHHHHHHhcCC-CHHHHHHHHHHHhhc-----C
Q 046888 341 YEVERLNEDEGLELFYKYAFRQNH-RPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQK-SKQDWENVLDNLKQI-----S 413 (1170)
Q Consensus 341 ~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~-~~~~w~~~l~~l~~~-----~ 413 (1170)
++++.|+.+|||.||++.+|.... ..+.+.++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 999999999999999999987633 234489999999999999999999999999985 677999999988654 2
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHhhcccccCCCC--HHHHHHHHhhCCCC------------HHHHHHHHHhcCCcEE
Q 046888 414 -GASRIYKLLRISYEELTFEEKSIFLDIACFFKGEG--KDRVLMLLHDRQYN------------VTQALSVLIDKSLIIE 478 (1170)
Q Consensus 414 -~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~l~~~~~~~------------~~~~l~~L~~~sLi~~ 478 (1170)
..+.|..++++|||.|+++.|.||+|||.||+++. .+.++..|.++||. ...++..|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 13579999999999999999999999999999985 56899999999964 3567999999999998
Q ss_pred eC-----CeEEehHHHHHHHHHHHhhhcccCCCCcceeeccc-ccccccccccccccccceecccccccccccCchhhcC
Q 046888 479 HN-----NRLHMHELLQEMGQEIVRQEDIKKPGKRSRLWHHK-DVRHVLKHNEGTDAIEGIFLNLSKIKGINLNSRAFTN 552 (1170)
Q Consensus 479 ~~-----~~~~mHdll~~~~~~i~~~e~~~~~~~~srl~~~~-~i~~~l~~~~~~~~i~~i~l~l~~~~~l~l~~~~f~~ 552 (1170)
.+ ..+.|||++||||.+++.+....... .+.... ...+ ..+......++.+.+.......+.-+ .+
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~----~~ 543 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS----SE 543 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCccc-cccccchhheeEEEEeccchhhccCC----CC
Confidence 75 67999999999999999854322211 111110 0000 01111112233332222221111111 23
Q ss_pred CCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCC-CCCCCCCC-CCCcCccccCCCCCcccccc
Q 046888 553 MPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYP-LRTLPSNF-KPKNLIELNLPFSKVVQIWE 630 (1170)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-l~~lp~~~-~~~~L~~L~L~~~~i~~l~~ 630 (1170)
.++|++|-+..+.. .....+.++....+.|++|++++|. +..||..+ .+-+|++|+|+++.++.+|.
T Consensus 544 ~~~L~tLll~~n~~-----------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD-----------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred CCccceEEEeecch-----------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence 34688887754320 0122223322223478888888654 67888887 68888888888888888888
Q ss_pred cccccccceeecCCCCCCCccCCCC-CCCCccccccccCCcccccCCCcccccccccccccccceeeccccccccccccc
Q 046888 631 GKKKAFKLKSINLSHSQYLIRIPDP-SEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTS 709 (1170)
Q Consensus 631 ~~~~l~~L~~L~Ls~~~~l~~~p~~-~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 709 (1170)
++++|.+|.+||+.++..+..+|.+ ..+++|++|.+..-. .... ...-..+.+|.+|+.|....+.. .+-..
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~----~~~l~el~~Le~L~~ls~~~~s~--~~~e~ 685 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSND----KLLLKELENLEHLENLSITISSV--LLLED 685 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccc----hhhHHhhhcccchhhheeecchh--HhHhh
Confidence 8888888888888888777666664 347777777776421 1000 00111123334444443322211 00001
Q ss_pred ccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccC-CCCCC
Q 046888 710 ICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLS-GLFSL 788 (1170)
Q Consensus 710 i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~-~l~~L 788 (1170)
+..++.|..+ .+.+.+.++.....+.++..+.+|+.|.+.+|........ ........ .+++|
T Consensus 686 l~~~~~L~~~--------------~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~--~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 686 LLGMTRLRSL--------------LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE--WEESLIVLLCFPNL 749 (889)
T ss_pred hhhhHHHHHH--------------hHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc--cccccchhhhHHHH
Confidence 1111111111 2222223344445566677777888888877776532110 00000001 13344
Q ss_pred CEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc
Q 046888 789 NWLNLNNCALTAIPEEIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 789 ~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~ 822 (1170)
..+.+.+|.....+.+..-.++|+.|.+..|...
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 4444444444444444445566666666666433
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=7.1e-42 Score=336.20 Aligned_cols=156 Identities=30% Similarity=0.522 Sum_probs=143.9
Q ss_pred CCCCCCCCccEEeccccccccCchHHHHHHHHhcCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCc
Q 046888 2 ASSSSSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWC 80 (1170)
Q Consensus 2 ~~~~~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wc 80 (1170)
+||+...+|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.+.|.+||++|+++|||||++|++|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 5778889999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEeeeCccccccc-cccHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCc-ccCCCc
Q 046888 81 PNELVNILKCKNLNGQIVIPIYYHVSPSDVRKQ-TGTFGEGFVRLEQQFKEKAETVQKWRDVMTQTSYLSGHE-STKIRP 158 (1170)
Q Consensus 81 l~El~~~~~~~~~~~~~v~pif~~v~ps~vr~~-~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~-~~~~~~ 158 (1170)
++||++|++|. ++|+||||+|+|++||+| .|. ...+++++||+||++||+++||. +..+++
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~ 161 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN 161 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence 99999999874 479999999999999997 443 13588999999999999999983 233688
Q ss_pred hhHHHHHHHHhhhhhc
Q 046888 159 EAMLVEVIVKDILKKL 174 (1170)
Q Consensus 159 e~~~i~~iv~~i~~~l 174 (1170)
|+++|++||+.|.++|
T Consensus 162 e~e~i~~iv~~v~k~l 177 (187)
T PLN03194 162 WSEVVTMASDAVIKNL 177 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999988
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-35 Score=335.39 Aligned_cols=268 Identities=33% Similarity=0.492 Sum_probs=213.6
Q ss_pred chhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH--HhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHh
Q 046888 190 LSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ--ISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1170)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1170)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+. .+.......++.+++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-----~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-----LSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-----EES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-----ccccccccccccccccccc
Confidence 788999999999876688999999999999999999999997 889999999997 5556666888999999988
Q ss_pred cCccc----CCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEee
Q 046888 268 GERLE----TGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEV 343 (1170)
Q Consensus 268 ~~~~~----~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l 343 (1170)
..... .........+.+.|+++++||||||||+...|+.+...++.+..|++||||||+..++...+.. ...|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 77432 2344466778899999999999999999999988888777777899999999999887766431 278999
Q ss_pred cCCCHhHHHHHHHHHHhccC-CCChhHHHHHHHHHHHhCCChhHHHHHHHHhcC-CCHHHHHHHHHHHhhcC-----Chh
Q 046888 344 ERLNEDEGLELFYKYAFRQN-HRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQ-KSKQDWENVLDNLKQIS-----GAS 416 (1170)
Q Consensus 344 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~~-----~~~ 416 (1170)
++|+.+||++||.+.++... .......+.+++|++.|+|+||||+++|++|+. .+..+|+..++++.... ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997665 334455678899999999999999999999954 36788999998876543 137
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhhcccccCCCC--HHHHHHHHhhCCCCH
Q 046888 417 RIYKLLRISYEELTFEEKSIFLDIACFFKGEG--KDRVLMLLHDRQYNV 463 (1170)
Q Consensus 417 ~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~l~~~~~~~~ 463 (1170)
.+..++..||+.|+++.|+||+++|+||.+.. .+.++++|.++|+..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 79999999999999999999999999999875 789999999988754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=3.9e-25 Score=291.49 Aligned_cols=344 Identities=20% Similarity=0.232 Sum_probs=194.9
Q ss_pred cCCCCcceeecccccccccccccccccccceecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceee
Q 046888 503 KKPGKRSRLWHHKDVRHVLKHNEGTDAIEGIFLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQF 582 (1170)
Q Consensus 503 ~~~~~~srl~~~~~i~~~l~~~~~~~~i~~i~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~ 582 (1170)
.+|.++.+.|...+-+............+...++++....-......|.++++|+.|+++++.. ...+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~------------~~~i 109 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL------------SGPI 109 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc------------CCcC
Confidence 3455566677644333222222211111233445544332223356788899999999977642 2234
Q ss_pred cCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcc-cccccccccccceeecCCCCCCCccCCC-CCCCCc
Q 046888 583 LDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVV-QIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPN 660 (1170)
Q Consensus 583 ~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~ 660 (1170)
+.++.....+|++|++++|.+........+++|++|+|++|.+. .+|..+..+++|++|+|++|.+...+|. ++++++
T Consensus 110 p~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 189 (968)
T PLN00113 110 PDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189 (968)
T ss_pred ChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcC
Confidence 44444334578888888887763322235677888888888776 5677777788888888888877666665 677777
Q ss_pred cccccccCCcc----------------cccCCCccc-ccccccccccccceeecccccccccccccccCCCcccEEecCC
Q 046888 661 LERINLWNCTH----------------LNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNE 723 (1170)
Q Consensus 661 L~~L~L~~c~~----------------L~l~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 723 (1170)
|++|+|++|.. |++++|.+. .+|..++++++|++|++++|...+.+|..++++++|+.|++++
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 77777765432 223333332 3455555555555555555555555555555555555555555
Q ss_pred CCCchhhh------ccccEEEccCcCCc-ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCC
Q 046888 724 CLNLESFL------ESLKKINLGRTTVT-ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNC 796 (1170)
Q Consensus 724 c~~l~~~~------~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~ 796 (1170)
|.....+| .+|+.|++++|.+. .+|..+.++++|+.|++++|.+.+ .+|.. +..+++|+.|+|++|
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~~-~~~l~~L~~L~L~~n 342 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG------KIPVA-LTSLPRLQVLQLWSN 342 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC------cCChh-HhcCCCCCEEECcCC
Confidence 43322222 23555555555554 345555555555555555555443 22322 555666666666666
Q ss_pred CCCC-CCcccCCCCCCCEEECcCCCCc-cccccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccccccc
Q 046888 797 ALTA-IPEEIGCLPSLEWLELRENNFE-SLPVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKR 865 (1170)
Q Consensus 797 ~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~ 865 (1170)
.++. +|..++.+++|+.|+|++|+++ .+|.++..+++|+.|++++|+....+|.. .++|+.|++.+|.-
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 6553 5555666666666666666655 45555666666666666666655555542 24566666666643
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4e-24 Score=281.87 Aligned_cols=266 Identities=24% Similarity=0.277 Sum_probs=131.6
Q ss_pred CeeEEEecCCCCC-CCCCCC-CCCcCccccCCCCCcc-cccccccccccceeecCCCCCCCccCCC-CCCCCcccccccc
Q 046888 592 KLRYLHLHKYPLR-TLPSNF-KPKNLIELNLPFSKVV-QIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW 667 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 667 (1170)
+|++|++++|.+. .+|..+ ++++|++|+|++|.+. .+|..+..+++|++|+|++|.+...+|. ++++++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 5666666666654 445544 5666666666666554 4555566666666666666665555554 5566666666555
Q ss_pred CCc----------------ccccCCCccc-ccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhh
Q 046888 668 NCT----------------HLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF 730 (1170)
Q Consensus 668 ~c~----------------~L~l~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~ 730 (1170)
++. .|++++|.+. .+|.++.++++|++|++++|...+.+|..+.++++|+.|++++|......
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 432 2233333332 34444555555555555555544455555555555555555554332222
Q ss_pred h------ccccEEEccCcCCc-ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CC
Q 046888 731 L------ESLKKINLGRTTVT-ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IP 802 (1170)
Q Consensus 731 ~------~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip 802 (1170)
| +.|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ .+|.. +..+++|+.|++++|++.. +|
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~------~~p~~-~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG------EIPEG-LCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe------eCChh-HhCcCCCCEEECcCCEecccCC
Confidence 1 23555555555554 445555555555555555555432 12222 3333344444444444432 34
Q ss_pred cccCCCCCCCEEECcCCCCc-cccccccCCCCCCEEEecCCCCCCCCCC---Cccccceecccccc
Q 046888 803 EEIGCLPSLEWLELRENNFE-SLPVSIKQLSRLKRLDLSNCSMLQSIPE---LPPSLKWLQAGNCK 864 (1170)
Q Consensus 803 ~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~i~~c~ 864 (1170)
..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|...+.+|. ..++|+.|++.+|.
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 44444444555555544444 3344444444444444444444333332 12344444444443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.7e-25 Score=245.80 Aligned_cols=272 Identities=23% Similarity=0.326 Sum_probs=212.9
Q ss_pred CCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCC--CCCcCccccCCCCCccccc
Q 046888 552 NMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNF--KPKNLIELNLPFSKVVQIW 629 (1170)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~ 629 (1170)
.|..|.+|+++.+. --..|.++.+- +++-+|+|++|.|.++|... ++..|-+|||++|.+..+|
T Consensus 101 ~l~dLt~lDLShNq-------------L~EvP~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-------------LREVPTNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred ccccceeeecchhh-------------hhhcchhhhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 46666666665442 12233344333 36667777777777777654 7777777777777777777
Q ss_pred ccccccccceeecCCCCCCCcc-CCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccc
Q 046888 630 EGKKKAFKLKSINLSHSQYLIR-IPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST 708 (1170)
Q Consensus 630 ~~~~~l~~L~~L~Ls~~~~l~~-~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 708 (1170)
+.+..|.+|++|+|++|.+... +-.+-.+++|+.|.+++-+. -+..+|.++..|.+|..++++.| ++..+|.
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR------Tl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPe 239 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR------TLDNIPTSLDDLHNLRDVDLSEN-NLPIVPE 239 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc------hhhcCCCchhhhhhhhhcccccc-CCCcchH
Confidence 7777777777777777764211 11123355566666665321 12578999999999999999976 4788999
Q ss_pred cccCCCcccEEecCCCCCch-----hhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccC
Q 046888 709 SICKLKSLIWLCLNECLNLE-----SFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLS 783 (1170)
Q Consensus 709 ~i~~L~~L~~L~l~~c~~l~-----~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~ 783 (1170)
.+.++.+|+.|+|+++...+ .....|+.|+++.|+++.+|..+.++++|+.|.+.+|++.- ..+|.. ++
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F-----eGiPSG-IG 313 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF-----EGIPSG-IG 313 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc-----cCCccc-hh
Confidence 99999999999999974221 23566999999999999999999999999999999999863 367877 99
Q ss_pred CCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCC
Q 046888 784 GLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 784 ~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
.+.+|+.+...+|++.-+|+.++.+..|+.|.|+.|.+.++|..|.-|+.|+.|||..|+.+.-.|.
T Consensus 314 KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999887664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.1e-24 Score=242.89 Aligned_cols=281 Identities=26% Similarity=0.365 Sum_probs=179.0
Q ss_pred eecCCCcCCCCCeeEEEecCCCCC--CCCCC-CCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCC
Q 046888 581 QFLDGLDYLPEKLRYLHLHKYPLR--TLPSN-FKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSE 657 (1170)
Q Consensus 581 ~~~~~l~~l~~~Lr~L~l~~~~l~--~lp~~-~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~ 657 (1170)
.+.+.+..+| .||.+.+..|.++ .+|.. |.+..|..|||++|+++..|.++...+++-.|+||+|++ ..+|.
T Consensus 69 ~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn--- 143 (1255)
T KOG0444|consen 69 SVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPN--- 143 (1255)
T ss_pred hhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCc---
Confidence 3444555555 6777777777766 45544 477777777777777777777777777777777777763 33443
Q ss_pred CCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCC-Cchhhhcc---
Q 046888 658 APNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL-NLESFLES--- 733 (1170)
Q Consensus 658 l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~-~l~~~~~~--- 733 (1170)
=-.++|..+-.|+|++|.+..+|+.+..|..|+.|.|++|...-.--..+-.|++|+.|.+++.. .+.++|++
T Consensus 144 ---~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 144 ---SLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred ---hHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 11122333334455556677777777777777777777775321111112245666666666543 23344444
Q ss_pred ---ccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCc----------------CCcccCccccCCCCCCCEEeCC
Q 046888 734 ---LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLS----------------GLVSLPASLLSGLFSLNWLNLN 794 (1170)
Q Consensus 734 ---L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~----------------~l~~lp~~~l~~l~~L~~L~L~ 794 (1170)
|..++++.|++..+|..+.++.+|+.|+|++|+++...- ++..+|.. +..++.|+.|.+.
T Consensus 221 l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH-HhhhHHHHHHHhc
Confidence 556667777777777777777777777777776643211 23355554 6677777777777
Q ss_pred CCCCC--CCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCC---CccccceeccccccccCCC
Q 046888 795 NCALT--AIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPE---LPPSLKWLQAGNCKRLQSL 869 (1170)
Q Consensus 795 ~~~l~--~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l 869 (1170)
+|+++ ++|..++.+.+|+.+..++|+++-+|.++..+.+|+.|.|++|. +..+|+ +.+.|+.|++.+.++|-.-
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCC
Confidence 77655 47777777777777777777777778888888888888887776 445665 4577788888887777654
Q ss_pred CC
Q 046888 870 PE 871 (1170)
Q Consensus 870 ~~ 871 (1170)
|.
T Consensus 379 PK 380 (1255)
T KOG0444|consen 379 PK 380 (1255)
T ss_pred CC
Confidence 43
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.6e-20 Score=247.59 Aligned_cols=260 Identities=27% Similarity=0.392 Sum_probs=182.2
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCcCccccCCCC-CcccccccccccccceeecCCCCCCCccCCC-CCCCCcccccccc
Q 046888 591 EKLRYLHLHKYPLRTLPSNF-KPKNLIELNLPFS-KVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW 667 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~-~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 667 (1170)
.+|+.|++.++.++.+|..+ .+++|++|+|+++ .+..+| .+..+++|+.|+|++|..+..+|. +..+++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 46666777666666666555 5666666666654 344554 355666666666666666666665 5666666666666
Q ss_pred CCcccccCCCcccccccccccccccceeecccccccccccc--------------------cccCCCcccEEecCCCCC-
Q 046888 668 NCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST--------------------SICKLKSLIWLCLNECLN- 726 (1170)
Q Consensus 668 ~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--------------------~i~~L~~L~~L~l~~c~~- 726 (1170)
+|..| +.+|..+ ++++|+.|++++|..+..+|. .+ .+++|+.|.+.+|..
T Consensus 690 ~c~~L-------~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 690 RCENL-------EILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCc-------CccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchh
Confidence 66555 5566544 566666666666655554443 22 344555555544321
Q ss_pred ------------chhhhccccEEEccCcC-CcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeC
Q 046888 727 ------------LESFLESLKKINLGRTT-VTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNL 793 (1170)
Q Consensus 727 ------------l~~~~~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L 793 (1170)
....|++|+.|++++|. +.++|.+++++++|+.|+|++|.... .+|.. .++++|+.|+|
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~------~LP~~--~~L~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE------TLPTG--INLESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC------eeCCC--CCccccCEEEC
Confidence 01124578899998874 55799999999999999999987543 56664 27899999999
Q ss_pred CCCC-CCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCCc---cccceeccccccccCCC
Q 046888 794 NNCA-LTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPELP---PSLKWLQAGNCKRLQSL 869 (1170)
Q Consensus 794 ~~~~-l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~i~~c~~L~~l 869 (1170)
++|. +..+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.|++.+|.+|+.+
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 9984 4456643 468999999999999999999999999999999999999988754 56677789999999876
Q ss_pred CC
Q 046888 870 PE 871 (1170)
Q Consensus 870 ~~ 871 (1170)
+.
T Consensus 910 ~l 911 (1153)
T PLN03210 910 SW 911 (1153)
T ss_pred cC
Confidence 53
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-22 Score=224.80 Aligned_cols=320 Identities=25% Similarity=0.271 Sum_probs=230.8
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCC-----------CceeecCCCcCCCCCeeEEEecCCC
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSD-----------SKVQFLDGLDYLPEKLRYLHLHKYP 602 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~Lr~L~l~~~~ 602 (1170)
.+|++..+.-++....|.++++|+.+++..+....++....... ....-.+.+..+| .||.|+|+.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhhch
Confidence 47777776667777788888888888887654322111100000 0001112344444 68888888888
Q ss_pred CCCCCCCC--CCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccccccC----------
Q 046888 603 LRTLPSNF--KPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWN---------- 668 (1170)
Q Consensus 603 l~~lp~~~--~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~---------- 668 (1170)
+..+|... .-.++++|+|++|.|+.+- ..+..+.+|..|.|+.|++.+..+. |.+++.|+.|+|..
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 88776543 3357888888888888775 3466777888888888876554444 66788888887653
Q ss_pred ------CcccccCCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCCC------chhhhcccc
Q 046888 669 ------CTHLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLN------LESFLESLK 735 (1170)
Q Consensus 669 ------c~~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~------l~~~~~~L~ 735 (1170)
++.|.|..|.|..+... |-.|.++++|+|..|+....-..++.+|++|+.|+++.+.. --+|.+.|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 34456667888877664 57788999999999876665566788999999999998742 124567799
Q ss_pred EEEccCcCCcccCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC----CCcccCCCCC
Q 046888 736 KINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA----IPEEIGCLPS 810 (1170)
Q Consensus 736 ~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~----ip~~l~~l~~ 810 (1170)
+|+|+.|+|+.+++ ++..|..|++|+|+.|.+. .+....|.++++|+.|||++|.|+- -...+..|++
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchH-------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 99999999999865 6888999999999999986 4555568899999999999998774 2345677999
Q ss_pred CCEEECcCCCCcccc-ccccCCCCCCEEEecCCCCCCCCCCCc--cccceeccc
Q 046888 811 LEWLELRENNFESLP-VSIKQLSRLKRLDLSNCSMLQSIPELP--PSLKWLQAG 861 (1170)
Q Consensus 811 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~--~~L~~L~i~ 861 (1170)
|+.|.|.||++..+| ..+..++.|+.|||.+|.....-|..+ ..|++|.+.
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 999999999999998 468899999999999998655545432 355655543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-21 Score=217.18 Aligned_cols=289 Identities=24% Similarity=0.297 Sum_probs=226.9
Q ss_pred cccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-CC
Q 046888 535 LNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-KP 612 (1170)
Q Consensus 535 l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~ 612 (1170)
+++.....-.+....++-++.||.|+++.+.. ..++..-..-..++++|+|++|.|+.+... | .+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-------------s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l 196 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLI-------------SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL 196 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchh-------------hcccCCCCCCCCCceEEeecccccccccccccccc
Confidence 44444445566777888889999999976532 111111111113799999999999988543 4 77
Q ss_pred CcCccccCCCCCcccccc-cccccccceeecCCCCCCCcc-CCCCCCCCcccccccc----------------CCccccc
Q 046888 613 KNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIR-IPDPSEAPNLERINLW----------------NCTHLNL 674 (1170)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~-~p~~~~l~~L~~L~L~----------------~c~~L~l 674 (1170)
.+|.+|.|+.|.|+.+|. .++.|++|+.|+|..|.+-.. .-.|.++++|+.|.|. ++..|+|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 799999999999999985 456699999999999985433 3447888888888754 4567788
Q ss_pred CCCccccccc-ccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhc-------cccEEEccCcCCcc
Q 046888 675 CDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLE-------SLKKINLGRTTVTE 746 (1170)
Q Consensus 675 ~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~-------~L~~L~L~~~~i~~ 746 (1170)
..|++..+.. ++-+|++|+.|+|++|.....-+++....++|+.|+|+.+ .+..+++ .|++|+|+.|.+..
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHH
Confidence 9999998865 5789999999999999988888888888999999999987 4455543 39999999999998
Q ss_pred cCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCccc
Q 046888 747 LPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESL 824 (1170)
Q Consensus 747 lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~l 824 (1170)
+.. .|..+++|++|+|+.|.+...+.. ....+.+|++|+.|.|.+|+|..+| ..+..+++|+.|+|.+|.|.++
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IED----aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIED----AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEec----chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 865 578899999999999998654332 2233888999999999999999988 4788999999999999999876
Q ss_pred -cccccCCCCCCEEEecCC
Q 046888 825 -PVSIKQLSRLKRLDLSNC 842 (1170)
Q Consensus 825 -p~~l~~l~~L~~L~L~~c 842 (1170)
|..+..+ +|+.|.+..-
T Consensus 432 q~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred cccccccc-hhhhhhhccc
Confidence 6777777 8888876543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.4e-21 Score=227.55 Aligned_cols=184 Identities=33% Similarity=0.449 Sum_probs=138.8
Q ss_pred ccCCCcccccccccccccccceeecccccc----------------------cccccccccCCCcccEEecCCCCCchhh
Q 046888 673 NLCDTAIEEVPSSVECLTNLEYLYINRCKR----------------------LKRVSTSICKLKSLIWLCLNECLNLESF 730 (1170)
Q Consensus 673 ~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~----------------------l~~lp~~i~~L~~L~~L~l~~c~~l~~~ 730 (1170)
+++.|.+..+|++++.+.+|+.|++.+|.. +..+|.....+++|++|+|..+ ++..+
T Consensus 247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~l 325 (1081)
T KOG0618|consen 247 DISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSL 325 (1081)
T ss_pred ecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-ccccc
Confidence 446677777887788888888887776653 2335555566777778877654 22222
Q ss_pred hcc--------------------------------ccEEEccCcCCc-ccCccccCCCCCCEEEccCCCCCCcCcCCccc
Q 046888 731 LES--------------------------------LKKINLGRTTVT-ELPSSFENIEGLGTLGLERSQLPHLLSGLVSL 777 (1170)
Q Consensus 731 ~~~--------------------------------L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~l 777 (1170)
|+. |+.|++.+|.++ ..-+.+.+.++|+.|+|+.|.+. .+
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-------~f 398 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-------SF 398 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-------cC
Confidence 211 566666666666 22334667888999999999875 68
Q ss_pred CccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCC-CCCC-Cc-cc
Q 046888 778 PASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQ-SIPE-LP-PS 854 (1170)
Q Consensus 778 p~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~-~lp~-l~-~~ 854 (1170)
|.+.+.++..|++|+|+||+++.+|..+..++.|+.|...+|++..+| .+.+++.|+.+||+.|.... .+|+ +| ++
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence 888888999999999999999999999999999999999999999999 88999999999999887543 2443 56 89
Q ss_pred cceeccccccc
Q 046888 855 LKWLQAGNCKR 865 (1170)
Q Consensus 855 L~~L~i~~c~~ 865 (1170)
|++|++++.+.
T Consensus 478 LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 478 LKYLDLSGNTR 488 (1081)
T ss_pred cceeeccCCcc
Confidence 99999998775
No 13
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.78 E-value=2.7e-20 Score=185.22 Aligned_cols=132 Identities=34% Similarity=0.594 Sum_probs=114.5
Q ss_pred EEeccccccccCchHHHHHHHHhcC--CCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcHHHHHHHH
Q 046888 12 VFLSFRGEDTRENFTSHLYAALCGK--KIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCPNELVNIL 88 (1170)
Q Consensus 12 vFis~~~~d~~~~f~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~~ 88 (1170)
|||||++.|.+..|+.+|..+|+++ |+++|+++ |+.+|..+.++|.++|++|+++|+|||++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444688999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--cEEEEEEeeeCccccc-cccccHHHHHHHHHHHhhhh--HHHHHHHHHHHh
Q 046888 89 KCKNLNG--QIVIPIYYHVSPSDVR-KQTGTFGEGFVRLEQQFKEK--AETVQKWRDVMT 143 (1170)
Q Consensus 89 ~~~~~~~--~~v~pif~~v~ps~vr-~~~g~~~~~~~~~~~~~~~~--~~~v~~w~~aL~ 143 (1170)
++....+ +.|+||||+|.+++++ .+.+.|...+..+....... ......|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986644 8999999999999999 78999988887765544333 467889998764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.1e-21 Score=210.11 Aligned_cols=244 Identities=28% Similarity=0.338 Sum_probs=204.7
Q ss_pred eecCCCcCCCCCeeEEEecCCCCCCCCCCC-CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCC
Q 046888 581 QFLDGLDYLPEKLRYLHLHKYPLRTLPSNF-KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAP 659 (1170)
Q Consensus 581 ~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~ 659 (1170)
++..++..++ .|.+|++++|.+..+|..+ .+..++.|+.++|++.++|+.+..+.+|+.|+.++|.+....++++.+.
T Consensus 59 ~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 59 VLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLL 137 (565)
T ss_pred hccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHh
Confidence 3444555555 6899999999999998877 7889999999999999999999999999999999999777777787777
Q ss_pred ccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhcc------
Q 046888 660 NLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLES------ 733 (1170)
Q Consensus 660 ~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~------ 733 (1170)
.|+.++.. +|++..+|.+++++.+|..|++.+|+.....|..+ +++.|++|+...+ .++.+|+.
T Consensus 138 ~l~dl~~~--------~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N-~L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 138 DLEDLDAT--------NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSN-LLETLPPELGGLES 207 (565)
T ss_pred hhhhhhcc--------ccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchh-hhhcCChhhcchhh
Confidence 76666544 47888999999999999999999987554444444 5999998887654 45566654
Q ss_pred ccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCE
Q 046888 734 LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEW 813 (1170)
Q Consensus 734 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~ 813 (1170)
|+-|++..|.|..+| .|..+..|++|.+..|.+. .+|.....++++|..|||..|++++.|+.+.-+.+|++
T Consensus 208 L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-------~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-------hhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 677788889999998 7889999999999888875 57777778999999999999999999999999999999
Q ss_pred EECcCCCCccccccccCCCCCCEEEecCCCC
Q 046888 814 LELRENNFESLPVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 814 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 844 (1170)
|++++|.++.+|.+++++ .|+.|.+.+|+.
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCch
Confidence 999999999999999999 999999999984
No 15
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.76 E-value=3e-18 Score=170.93 Aligned_cols=137 Identities=38% Similarity=0.672 Sum_probs=115.8
Q ss_pred CccEEecccc-ccccCchHHHHHHHHhcCCCcEEecCCCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcHHHHHHH
Q 046888 9 NYDVFLSFRG-EDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCPNELVNI 87 (1170)
Q Consensus 9 ~~dvFis~~~-~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~ 87 (1170)
.|||||||++ +|+.+.|+.+|..+|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 56678999999999999999999998544444444 999999999999999999999999999999999
Q ss_pred HHhhhc-CCcEEEEEEeeeCccccccccccHHHHHHHHHHHhhhhHHHHHHHHHHHhhccc
Q 046888 88 LKCKNL-NGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAETVQKWRDVMTQTSY 147 (1170)
Q Consensus 88 ~~~~~~-~~~~v~pif~~v~ps~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~ 147 (1170)
+++... ...++|||+++..|+++..+.+.++.++.....+..+...+ +.|+.++..++.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 998754 66899999999999999999999999998874444333333 689998876653
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.4e-20 Score=201.74 Aligned_cols=233 Identities=27% Similarity=0.343 Sum_probs=207.0
Q ss_pred CeeEEEecCCCCCCCCCCC-CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPSNF-KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
.|..|.+++|.++.+.... ++..|.+|++++|++.++|..++.+..++.|+.++|++....+.+..+.+|..|+.+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-- 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-- 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc--
Confidence 4778889999998775555 8999999999999999999999999999999999999766666688888777776554
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhcc------ccEEEccCcCC
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLES------LKKINLGRTTV 744 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~------L~~L~L~~~~i 744 (1170)
|.+.++|++++.+..|+.|+..+|. ..++|..++++.+|..|++.++ ++..+|+. |++|+...|.+
T Consensus 124 ------n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 124 ------NELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred ------cceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhh
Confidence 7778999999999999999998875 6678888999999999999886 45555443 99999999999
Q ss_pred cccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccC-CCCCCCEEECcCCCCcc
Q 046888 745 TELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIG-CLPSLEWLELRENNFES 823 (1170)
Q Consensus 745 ~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~-~l~~L~~L~L~~n~l~~ 823 (1170)
+.+|..++.+.+|..|+|..|++. .+|. |.++..|.+|+++.|.|.-+|.... ++++|..|+|..|++++
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~-------~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIR-------FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccc-------cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 999999999999999999999986 5774 9999999999999999999998776 89999999999999999
Q ss_pred ccccccCCCCCCEEEecCCC
Q 046888 824 LPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 824 lp~~l~~l~~L~~L~L~~c~ 843 (1170)
+|..+..+.+|.+||+++|.
T Consensus 267 ~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNND 286 (565)
T ss_pred CchHHHHhhhhhhhcccCCc
Confidence 99999999999999999997
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=4.4e-17 Score=199.38 Aligned_cols=240 Identities=22% Similarity=0.249 Sum_probs=181.5
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccccccc
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKK 633 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~ 633 (1170)
++|+.|.+.++.. ..+..+|++|++|++++|.++.+|.. +++|+.|++++|.+..+|..
T Consensus 222 ~~L~~L~L~~N~L-----------------t~LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l-- 280 (788)
T PRK15387 222 AHITTLVIPDNNL-----------------TSLPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL-- 280 (788)
T ss_pred cCCCEEEccCCcC-----------------CCCCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc--
Confidence 3688888866532 12223467899999999999999864 57899999999999988763
Q ss_pred ccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCC
Q 046888 634 KAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKL 713 (1170)
Q Consensus 634 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 713 (1170)
..+|+.|+|++|++ ..+|. .+++|+.|+|+ +|.+..+|.. ..+|+.|++++|.. ..+|.. .
T Consensus 281 -p~~L~~L~Ls~N~L-t~LP~--~p~~L~~LdLS--------~N~L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l---p 341 (788)
T PRK15387 281 -PSGLCKLWIFGNQL-TSLPV--LPPGLQELSVS--------DNQLASLPAL---PSELCKLWAYNNQL-TSLPTL---P 341 (788)
T ss_pred -hhhcCEEECcCCcc-ccccc--cccccceeECC--------CCccccCCCC---cccccccccccCcc-cccccc---c
Confidence 35688899999975 45554 23455555554 4666777763 24678888988764 456652 3
Q ss_pred CcccEEecCCCC--CchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEE
Q 046888 714 KSLIWLCLNECL--NLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWL 791 (1170)
Q Consensus 714 ~~L~~L~l~~c~--~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L 791 (1170)
.+|+.|++++|. .+..+|.+|+.|++++|.+..+|... .+|+.|+|++|.+.. +|.. .++|+.|
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~-------LP~l----~s~L~~L 407 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTS-------LPVL----PSELKEL 407 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCcccc---cccceEEecCCcccC-------CCCc----ccCCCEE
Confidence 578999999874 22234667999999999999988643 579999999998763 4432 3579999
Q ss_pred eCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCC
Q 046888 792 NLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 792 ~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
++++|.++.+|.. +.+|+.|+|++|+|+.+|..+.++++|+.|+|++|+..+..|.
T Consensus 408 dLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 408 MVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred EccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 9999999999864 4578899999999999999999999999999999997765543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=2e-16 Score=193.70 Aligned_cols=229 Identities=20% Similarity=0.212 Sum_probs=123.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 591 EKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
.+|+.|++.+|.++.+|.. +++|++|+|++|+++.+|.. .++|+.|+|++|.+ ..+|.+ ..+|+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l--p~~L~-------- 285 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL--PSGLC-------- 285 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc--hhhcC--------
Confidence 4566677777776666653 45667777777766666542 34566666666653 233331 12233
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCC--CchhhhccccEEEccCcCCcccC
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL--NLESFLESLKKINLGRTTVTELP 748 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~--~l~~~~~~L~~L~L~~~~i~~lp 748 (1170)
.|++++|.+..+|.. +++|+.|++++|. +..+|.. ..+|+.|.+++|. .+..+|.+|+.|+|++|.++.+|
T Consensus 286 ~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 286 KLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP 358 (788)
T ss_pred EEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCccccccccccccceEecCCCccCCCC
Confidence 334444555666652 3567777777664 3334432 2245555565542 12233445666666666666666
Q ss_pred ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccc
Q 046888 749 SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 749 ~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l 828 (1170)
.. ..+|+.|++++|.+.. +|.. ..+|+.|+|++|.++.+|.. .++|+.|++++|+|+.+|..
T Consensus 359 ~l---p~~L~~L~Ls~N~L~~-------LP~l----~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l- 420 (788)
T PRK15387 359 TL---PSELYKLWAYNNRLTS-------LPAL----PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML- 420 (788)
T ss_pred CC---Ccccceehhhcccccc-------Cccc----ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc-
Confidence 43 2345566666665542 3321 23566666666666666542 24566666666666666642
Q ss_pred cCCCCCCEEEecCCCCCCCCCCC---ccccceeccccc
Q 046888 829 KQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNC 863 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c 863 (1170)
..+|+.|+|++|. ++.+|.- .++|+.|++.++
T Consensus 421 --~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 421 --PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred --hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCC
Confidence 2345666666665 3345542 234445555444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=2.5e-16 Score=194.32 Aligned_cols=223 Identities=22% Similarity=0.381 Sum_probs=166.4
Q ss_pred CCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCcccccccc
Q 046888 589 LPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW 667 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 667 (1170)
+|++|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+. .+|. +. .+|+.|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L--- 267 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL--- 267 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE---
Confidence 45689999999999999987653 589999999999998887654 47999999999854 5554 21 244444
Q ss_pred CCcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchh----hhccccEEEccCcC
Q 046888 668 NCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLES----FLESLKKINLGRTT 743 (1170)
Q Consensus 668 ~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~----~~~~L~~L~L~~~~ 743 (1170)
++++|.+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|. +.. +|.+|+.|++++|.
T Consensus 268 -----~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 268 -----DLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred -----ECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccccccceeccccCCc
Confidence 445566688887664 589999999885 455676442 468888888763 322 34568999999999
Q ss_pred CcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcc
Q 046888 744 VTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFES 823 (1170)
Q Consensus 744 i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~ 823 (1170)
++.+|..+. ++|+.|++++|.+. .+|.. + .++|+.|+|++|+++.+|..+. .+|+.|++++|+++.
T Consensus 337 Lt~LP~~l~--~sL~~L~Ls~N~L~-------~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 337 LTSLPASLP--PELQVLDVSKNQIT-------VLPET-L--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVR 402 (754)
T ss_pred cccCChhhc--CcccEEECCCCCCC-------cCChh-h--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCccc
Confidence 988887664 68999999999875 34443 2 2578999999999998887654 478899999999988
Q ss_pred ccccc----cCCCCCCEEEecCCCCC
Q 046888 824 LPVSI----KQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 824 lp~~l----~~l~~L~~L~L~~c~~l 845 (1170)
+|..+ ..++++..|+|.+|+..
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77654 44578889999998853
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=5.5e-16 Score=191.31 Aligned_cols=238 Identities=22% Similarity=0.362 Sum_probs=179.8
Q ss_pred CCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCC
Q 046888 590 PEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNC 669 (1170)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 669 (1170)
..+...|+++++.++.+|..+ +++|+.|+|++|+++.+|..+. .+|++|+|++|.+. .+|.- -.++|+.|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l~~~L~~L----- 246 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPAT-LPDTIQEM----- 246 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChh-hhccccEE-----
Confidence 346788999999999999865 4689999999999999998764 59999999999854 55641 12345555
Q ss_pred cccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhh----hccccEEEccCcCCc
Q 046888 670 THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF----LESLKKINLGRTTVT 745 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~----~~~L~~L~L~~~~i~ 745 (1170)
++++|.+..+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++| ++..+ |.+|+.|++++|.++
T Consensus 247 ---~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ---ELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLT 317 (754)
T ss_pred ---ECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccc
Confidence 445567788888764 589999999875 557887664 58999999987 44444 456889999999999
Q ss_pred ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc
Q 046888 746 ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLP 825 (1170)
Q Consensus 746 ~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp 825 (1170)
.+|..+. ++|+.|++++|.+. .+|.. + .++|+.|+|++|+++.+|..+ .++|+.|+|++|+|+.+|
T Consensus 318 ~LP~~l~--~sL~~L~Ls~N~Lt-------~LP~~-l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 318 ALPETLP--PGLKTLEAGENALT-------SLPAS-L--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLP 383 (754)
T ss_pred cCCcccc--ccceeccccCCccc-------cCChh-h--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCC
Confidence 8887553 68999999999875 34443 2 268999999999999888765 368999999999999988
Q ss_pred ccccCCCCCCEEEecCCCCCCCCCCCc-------cccceeccccc
Q 046888 826 VSIKQLSRLKRLDLSNCSMLQSIPELP-------PSLKWLQAGNC 863 (1170)
Q Consensus 826 ~~l~~l~~L~~L~L~~c~~l~~lp~l~-------~~L~~L~i~~c 863 (1170)
..+. ..|+.|++++|+. ..+|... +++..|.+.+.
T Consensus 384 ~~l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 384 ENLP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HhHH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCC
Confidence 7664 3688999999874 4666522 34455555543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=3.5e-17 Score=193.01 Aligned_cols=235 Identities=26% Similarity=0.370 Sum_probs=164.2
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~ 670 (1170)
+|+.|..+.|++..+-..+.+.+|+++++++|++..+|+.+..+.+|+.|+..+|.+ ..+|. +....+|+.|.+..
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~-- 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY-- 296 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh--
Confidence 677777777777766666677788888888888888887778888888888888775 44443 55555555554443
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccc--------------------------cCCCcccEEecCCC
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSI--------------------------CKLKSLIWLCLNEC 724 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i--------------------------~~L~~L~~L~l~~c 724 (1170)
|.++.+|+..+.++.|++|+|..|. +..+|..+ ..++.|+.|.+.++
T Consensus 297 ------nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 297 ------NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred ------hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 4456677766667777777776654 34444321 11223444444443
Q ss_pred CCchh-h-----hccccEEEccCcCCcccCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCC
Q 046888 725 LNLES-F-----LESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCA 797 (1170)
Q Consensus 725 ~~l~~-~-----~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~ 797 (1170)
.--.+ + ...|+.|+|++|.+.++|. .+.++..|+.|+|+||++. .+|.. +.++..|++|...+|.
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-------~Lp~t-va~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-------TLPDT-VANLGRLHTLRAHSNQ 441 (1081)
T ss_pred cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-------hhhHH-HHhhhhhHHHhhcCCc
Confidence 21111 1 2348899999999998887 4678889999999999876 56755 7788899999999999
Q ss_pred CCCCCcccCCCCCCCEEECcCCCCc--cccccccCCCCCCEEEecCCCCCC
Q 046888 798 LTAIPEEIGCLPSLEWLELRENNFE--SLPVSIKQLSRLKRLDLSNCSMLQ 846 (1170)
Q Consensus 798 l~~ip~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~ 846 (1170)
+..+| .+..++.|+.+|++.|+++ .+|..... ++|++|||++|..+.
T Consensus 442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 99998 7888999999999999887 34433322 789999999998643
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1e-16 Score=153.16 Aligned_cols=161 Identities=29% Similarity=0.425 Sum_probs=102.0
Q ss_pred CCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccc
Q 046888 604 RTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVP 683 (1170)
Q Consensus 604 ~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp 683 (1170)
..+|..|++.++..|-|++|++..+|..+..+.+|+.|++++| +|+++|
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-------------------------------qie~lp 72 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-------------------------------QIEELP 72 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-------------------------------hhhhcC
Confidence 3556666666666666666666666666666666555555554 447788
Q ss_pred cccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEcc
Q 046888 684 SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLE 763 (1170)
Q Consensus 684 ~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 763 (1170)
.+|+.+++|+.|+++-|+ +..+|.++|.++.|+.|++..+
T Consensus 73 ~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltyn--------------------------------------- 112 (264)
T KOG0617|consen 73 TSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYN--------------------------------------- 112 (264)
T ss_pred hhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcccc---------------------------------------
Confidence 888888888888887543 5556666666665555555442
Q ss_pred CCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCC
Q 046888 764 RSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 764 ~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 843 (1170)
.+... .+|.. |-.+..|+-|.|++|.+.-+|.+++.+++|+.|.+..|.+-++|..++.+++|+.|.+.+|+
T Consensus 113 --nl~e~-----~lpgn-ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 113 --NLNEN-----SLPGN-FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred --ccccc-----cCCcc-hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 22211 23332 33445556666666666666777777777777777777777777777777777777777776
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8.7e-16 Score=146.92 Aligned_cols=150 Identities=28% Similarity=0.417 Sum_probs=115.3
Q ss_pred cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCC
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERS 765 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~ 765 (1170)
+-++.++..|.|++|+ +..+|+.|..|.+|+.|++. +|+|+++|.+++.+++|+.|++.-|
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~------------------nnqie~lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLS------------------NNQIEELPTSISSLPKLRILNVGMN 89 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcc------------------cchhhhcChhhhhchhhhheecchh
Confidence 3345566666666654 44555556666665555443 3567777888888888888888877
Q ss_pred CCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC--CCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCC
Q 046888 766 QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA--IPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 766 ~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~--ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 843 (1170)
++. .+|.. |+.++.|+.|+|.+|++.+ +|..+..+..|+.|.|++|.|+-+|..++++++|+.|.+..|.
T Consensus 90 rl~-------~lprg-fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 90 RLN-------ILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhh-------cCccc-cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 764 45665 8999999999999999986 8999999999999999999999999999999999999999998
Q ss_pred CCCCCCCC---ccccceeccccc
Q 046888 844 MLQSIPEL---PPSLKWLQAGNC 863 (1170)
Q Consensus 844 ~l~~lp~l---~~~L~~L~i~~c 863 (1170)
.+ ++|.- ...|++|.|.+.
T Consensus 162 ll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccc
Confidence 54 45532 256777777654
No 24
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.42 E-value=4.8e-14 Score=131.98 Aligned_cols=87 Identities=31% Similarity=0.590 Sum_probs=75.5
Q ss_pred EEeccccccccCchHHHHHHHHhcCCCcEEecCCCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcHHHHHHHHHhh
Q 046888 12 VFLSFRGEDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCPNELVNILKCK 91 (1170)
Q Consensus 12 vFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~~~~~ 91 (1170)
|||||+++| +.|+.+|++.|+++|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|.||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 679999999999999999999999999999999999999999999999999999999999998884
Q ss_pred hcCCcEEEEEEee
Q 046888 92 NLNGQIVIPIYYH 104 (1170)
Q Consensus 92 ~~~~~~v~pif~~ 104 (1170)
+.++.++||..+
T Consensus 76 -~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 -KRGKPIIPVRLD 87 (102)
T ss_dssp -CTSESEEEEECS
T ss_pred -HCCCEEEEEEEC
Confidence 245579999843
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=2.1e-11 Score=160.40 Aligned_cols=298 Identities=15% Similarity=0.164 Sum_probs=187.7
Q ss_pred CCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 179 MSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
.+|..+.++|-|..-++.|.. ....+++.|+|++|.||||++..+.++ ++.++|+. +. ....+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~---~~d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LD---ESDNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cC---cccCCHHHH
Confidence 567777889999876666543 246789999999999999999998753 23578885 22 123344555
Q ss_pred HHHHHHHHhcCcccC-----------CCCChh---HHHHHHhc--CCCeEEEEeCCCChH--H-HHHHHcccCCCCCCcE
Q 046888 259 HKQVVSLLLGERLET-----------GGPNIP---AYALERLR--RTKVFMVLDDVSEFE--Q-LKYLVGWLDGFCPGSR 319 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~-----------~~~~l~---~~l~~~L~--~kk~LlVLDdv~~~~--~-~~~l~~~~~~~~~gsr 319 (1170)
...++..+....... +...+. ..+...+. +.+++|||||+...+ . .+.+...++...++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 555555553211110 111111 12223332 679999999996532 1 2222222233346778
Q ss_pred EEEEeCChhHH--HHhCCCCcceEeec----CCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHH
Q 046888 320 IVVTTRDKQVL--RKQGVKDEHVYEVE----RLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSS 393 (1170)
Q Consensus 320 IIiTTR~~~v~--~~~~~~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~ 393 (1170)
+|||||...-. ...... ....++. +|+.+|+.++|...... . -..+...++.+.++|.|+++..++..
T Consensus 155 lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~----~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSS-P----IEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCC-C----CCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999984211 111111 1345666 99999999999776421 1 12334578999999999999999877
Q ss_pred hcCCCHHHHHHHHHHHhhcCChhhHHHHHHH-HHhcCCHHHHHHHhhcccccCCCCHHHHHHHHhhCCCCHHHHHHHHHh
Q 046888 394 LQQKSKQDWENVLDNLKQISGASRIYKLLRI-SYEELTFEEKSIFLDIACFFKGEGKDRVLMLLHDRQYNVTQALSVLID 472 (1170)
Q Consensus 394 L~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~ 472 (1170)
+...... .......+...+. ..+.+.+.- .++.||++.++.++..|+++ .++.+.+..+.. .-.....+..|.+
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~ 303 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINA-SHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELER 303 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHH
Confidence 7543210 0111122222122 446665444 48999999999999999986 555555554543 2345788999999
Q ss_pred cCCcEE-e---CCeEEehHHHHHHHHHHHhhh
Q 046888 473 KSLIIE-H---NNRLHMHELLQEMGQEIVRQE 500 (1170)
Q Consensus 473 ~sLi~~-~---~~~~~mHdll~~~~~~i~~~e 500 (1170)
.+++.. . ...|++|++++++.+.....+
T Consensus 304 ~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 304 QGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 999653 2 237999999999999887544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=3.7e-14 Score=153.00 Aligned_cols=242 Identities=20% Similarity=0.268 Sum_probs=161.8
Q ss_pred cCCCCCeeEEEecCCCCCCCCCC-C-CCCcCccccCCCCCcccc-cccccccccceeecCCCCCCCccCCC--CCCCCcc
Q 046888 587 DYLPEKLRYLHLHKYPLRTLPSN-F-KPKNLIELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLIRIPD--PSEAPNL 661 (1170)
Q Consensus 587 ~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L 661 (1170)
..+|+.-..+.|..|.|+.||+. | .+++|+.|||++|+|+.+ |..++.+.+|..|-+-+++.++.+|. |.++..|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45677889999999999999876 4 889999999999999977 57789999998888888666778886 8899999
Q ss_pred ccccccCCcccccCCCcccccc-cccccccccceeecccccccccccc-cccCCCcccEEecCCCCCc-----h------
Q 046888 662 ERINLWNCTHLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVST-SICKLKSLIWLCLNECLNL-----E------ 728 (1170)
Q Consensus 662 ~~L~L~~c~~L~l~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l-----~------ 728 (1170)
+.|.+.-++ +..++ ..+..|++|..|.+.+|.. ..++. ++..+.+++++.+..++.+ .
T Consensus 143 qrLllNan~--------i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 143 QRLLLNANH--------INCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HHHhcChhh--------hcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 998876532 22222 2345566666666665542 23332 4445555555554333210 0
Q ss_pred -----------------------------hhhccccEE----EccCcCCcccCc-cccCCCCCCEEEccCCCCCCcCcCC
Q 046888 729 -----------------------------SFLESLKKI----NLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGL 774 (1170)
Q Consensus 729 -----------------------------~~~~~L~~L----~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l 774 (1170)
.+...++.+ ....+.....|. .|..+++|++|+|++|+++.
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~----- 288 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR----- 288 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-----
Confidence 001111111 111112222222 46778888888888888764
Q ss_pred cccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCccc-cccccCCCCCCEEEecCCCC
Q 046888 775 VSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 775 ~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~ 844 (1170)
+.+..|.++..|+.|.|..|+|..+. ..+.++..|+.|+|.+|+|+.+ |..+..+.+|.+|+|-.|+.
T Consensus 289 --i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 --IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred --hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 44445778888888888888887653 3466788888888888888855 66777888888888877764
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=7.6e-14 Score=150.60 Aligned_cols=249 Identities=22% Similarity=0.256 Sum_probs=175.2
Q ss_pred EecCCCCCCCCCCCCCCcCccccCCCCCccccccc-ccccccceeecCCCCCCCccCCC-CCCCCccccccccCCccccc
Q 046888 597 HLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEG-KKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNL 674 (1170)
Q Consensus 597 ~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l 674 (1170)
+.++-.++++|... +..-+.++|..|+|+.+|++ ++.+++||.||||+|.+....|+ |.++.+|..|-+.+
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg------ 124 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG------ 124 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc------
Confidence 44455567777654 45778899999999999965 79999999999999998887787 88888877775543
Q ss_pred CCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhc-------cccEEEccCcCCc-
Q 046888 675 CDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLE-------SLKKINLGRTTVT- 745 (1170)
Q Consensus 675 ~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~-------~L~~L~L~~~~i~- 745 (1170)
+|.|+++|.. +++|..|+.|.+.-|+..-.....+..|++|..|.+.++ .++.++. .++.+++..|.+.
T Consensus 125 -~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 125 -NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred -CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc
Confidence 5788999985 799999999999888766666677888999888888765 2333322 2455555544421
Q ss_pred ------------ccCccccCCCCCCEEEccCCCCCCc-------------------CcCCcccCccccCCCCCCCEEeCC
Q 046888 746 ------------ELPSSFENIEGLGTLGLERSQLPHL-------------------LSGLVSLPASLLSGLFSLNWLNLN 794 (1170)
Q Consensus 746 ------------~lp~~l~~l~~L~~L~L~~~~~~~~-------------------~~~l~~lp~~~l~~l~~L~~L~L~ 794 (1170)
..|..++...-..-..+...++... .......|...|..+++|+.|+|+
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 0111111111111111111100000 001124455668899999999999
Q ss_pred CCCCCCC-CcccCCCCCCCEEECcCCCCcccc-ccccCCCCCCEEEecCCCCCCCCCCCccc
Q 046888 795 NCALTAI-PEEIGCLPSLEWLELRENNFESLP-VSIKQLSRLKRLDLSNCSMLQSIPELPPS 854 (1170)
Q Consensus 795 ~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~~~ 854 (1170)
+|.++.+ +.++..+..|+.|.|.+|++..+. ..+.++..|+.|+|.+|+...--|..+..
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 9999996 568899999999999999998775 45788999999999999977766665543
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.3e-12 Score=150.00 Aligned_cols=207 Identities=24% Similarity=0.223 Sum_probs=95.1
Q ss_pred CCCcCccccCCCCCcc-----cccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccc
Q 046888 611 KPKNLIELNLPFSKVV-----QIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSS 685 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~ 685 (1170)
.+.+|++|+++++.+. .++..+...++|+.|+++++.... .+ ..+..++..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~-----------------------~~~~~~~~~ 76 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IP-----------------------RGLQSLLQG 76 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cc-----------------------hHHHHHHHH
Confidence 4455777777777663 344555566667777776665321 01 011222333
Q ss_pred cccccccceeecccccccccccccccCCCc---ccEEecCCCCCc-----------hhhhccccEEEccCcCCc-----c
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKS---LIWLCLNECLNL-----------ESFLESLKKINLGRTTVT-----E 746 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~---L~~L~l~~c~~l-----------~~~~~~L~~L~L~~~~i~-----~ 746 (1170)
+..+++|+.|++++|......+..+..+.+ |+.|++++|... ..+++.|+.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344445555555544433333332322222 455555444211 001133455555555444 2
Q ss_pred cCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcCCCC
Q 046888 747 LPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRENNF 821 (1170)
Q Consensus 747 lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~n~l 821 (1170)
++..+..+++|++|++++|.+.+. ....++.. +..+++|+.|+|++|.+++ ++..+..+++|+.|++++|.+
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDA--GIRALAEG-LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchH--HHHHHHHH-HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 233444555566666666555421 00111111 3334566666666665542 233444555666666666655
Q ss_pred ccc-cccc-----cCCCCCCEEEecCCCC
Q 046888 822 ESL-PVSI-----KQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 822 ~~l-p~~l-----~~l~~L~~L~L~~c~~ 844 (1170)
+.. +..+ ...+.|+.|++++|..
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 421 0011 1135566666666643
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1.7e-12 Score=148.96 Aligned_cols=234 Identities=22% Similarity=0.216 Sum_probs=129.8
Q ss_pred CeeEEEecCCCCC-----CCCCCC-CCCcCccccCCCCCccc-------ccccccccccceeecCCCCCCCccCCC-CCC
Q 046888 592 KLRYLHLHKYPLR-----TLPSNF-KPKNLIELNLPFSKVVQ-------IWEGKKKAFKLKSINLSHSQYLIRIPD-PSE 657 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~-------l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~ 657 (1170)
+|+.|++.++.+. .++..+ ..++|++|+++++.+.. ++..+..+++|+.|+|++|.+....+. +..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5999999999984 244333 56779999999887663 234566788999999999987643332 222
Q ss_pred C---CccccccccCCcccccCCCcccccccccccc-cccceeecccccccc----cccccccCCCcccEEecCCCCCchh
Q 046888 658 A---PNLERINLWNCTHLNLCDTAIEEVPSSVECL-TNLEYLYINRCKRLK----RVSTSICKLKSLIWLCLNECLNLES 729 (1170)
Q Consensus 658 l---~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~c~~l~~ 729 (1170)
+ ++|++|++++|.. .......+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.--..
T Consensus 104 l~~~~~L~~L~ls~~~~---~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 104 LLRSSSLQELKLNNNGL---GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HhccCcccEEEeeCCcc---chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 2 4477777777631 112222334445566 788888888887552 2334455566777777776532110
Q ss_pred hhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcc
Q 046888 730 FLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEE 804 (1170)
Q Consensus 730 ~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~ 804 (1170)
.+..++..+..+++|+.|++++|.+.... ...+... +..+++|+.|++++|.+++ +...
T Consensus 181 -------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~-~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 181 -------------GIRALAEGLKANCNLEVLDLNNNGLTDEG--ASALAET-LASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred -------------HHHHHHHHHHhCCCCCEEeccCCccChHH--HHHHHHH-hcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 00122233334455666666655543210 0011111 3445556666666665553 1111
Q ss_pred c-CCCCCCCEEECcCCCCc-----cccccccCCCCCCEEEecCCCC
Q 046888 805 I-GCLPSLEWLELRENNFE-----SLPVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 805 l-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~ 844 (1170)
+ ...+.|+.|++++|.++ .++..+..+++|++|++++|..
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 1 12355666666666553 2333444455666666666653
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=4.4e-09 Score=124.39 Aligned_cols=286 Identities=17% Similarity=0.156 Sum_probs=171.2
Q ss_pred CCCCCCccccchhHHHHHHHHhhcC--CCCeEEEEEEecCCChHHHHHHHHHHHHhccCC--ceEEEEechhhhhcCcCH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTG--LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE--GKCFIENVREEIENGVGL 255 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~ 255 (1170)
+...++.++||+.++++|...+... ......+.|+|++|+|||++++.+++++..... ..+++. .....+.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-----~~~~~~~ 99 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-----CQIDRTR 99 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-----CCcCCCH
Confidence 3346788999999999999988532 233456789999999999999999998766542 234443 2334456
Q ss_pred HHHHHHHHHHHhcCcccC---CCCChhHHHHHHhc--CCCeEEEEeCCCChH------HHHHHHcccCCCCCCcE--EEE
Q 046888 256 VHLHKQVVSLLLGERLET---GGPNIPAYALERLR--RTKVFMVLDDVSEFE------QLKYLVGWLDGFCPGSR--IVV 322 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~---~~~~l~~~l~~~L~--~kk~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IIi 322 (1170)
..++.+++.++....... ....+.+.+.+.+. +++++||||+++... .+..+...... .++++ +|.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~ 178 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEE
Confidence 677888888887532221 12223334445554 456899999997643 34444433222 13333 566
Q ss_pred EeCChhHHHHhC-----CCCcceEeecCCCHhHHHHHHHHHHhc---cCCCC-hhHHHHHHHHHHHhCCChhHHHHHHHH
Q 046888 323 TTRDKQVLRKQG-----VKDEHVYEVERLNEDEGLELFYKYAFR---QNHRP-EHLTVLSKKAVRYAEGNPLALEVLGSS 393 (1170)
Q Consensus 323 TTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~-~~~~~~~~~i~~~~~GlPLAl~~lg~~ 393 (1170)
++.+..+..... .-....+.+++++.++..+++..++-. ..... +..+.+++......|..+.|+.++-..
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 666554332211 001246799999999999999887632 12222 233333333333356677887776443
Q ss_pred h-----cC---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccC----CCCHHH----HHHHHh
Q 046888 394 L-----QQ---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFK----GEGKDR----VLMLLH 457 (1170)
Q Consensus 394 L-----~~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~----l~~l~~ 457 (1170)
. .+ .+.+....+++... .....-.+..|+.++|.++..++.... ...... ...+..
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~--------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE--------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 2 11 24566666666541 122345678999999988877764432 222222 223333
Q ss_pred hCCCC------HHHHHHHHHhcCCcEEe
Q 046888 458 DRQYN------VTQALSVLIDKSLIIEH 479 (1170)
Q Consensus 458 ~~~~~------~~~~l~~L~~~sLi~~~ 479 (1170)
..+.. ...++..|.+.|+|...
T Consensus 331 ~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 33332 24568889999999754
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=2.1e-12 Score=145.57 Aligned_cols=207 Identities=27% Similarity=0.421 Sum_probs=136.5
Q ss_pred EEecCCCCCCCCCCC---CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCccc
Q 046888 596 LHLHKYPLRTLPSNF---KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHL 672 (1170)
Q Consensus 596 L~l~~~~l~~lp~~~---~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L 672 (1170)
|.|++-.++.+|..- .+..-+..||+.|.+..+|..+..+..|..|.|.+|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------------------------- 109 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC------------------------- 109 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-------------------------
Confidence 344444445444322 3444455666666666666666655555555555543
Q ss_pred ccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCcccc
Q 046888 673 NLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFE 752 (1170)
Q Consensus 673 ~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~ 752 (1170)
+..+|..+.++..|.+|+|+.|. +..+|..++.|+ |+.|-+++|+++.+|..++
T Consensus 110 ------~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-------------------Lkvli~sNNkl~~lp~~ig 163 (722)
T KOG0532|consen 110 ------IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-------------------LKVLIVSNNKLTSLPEEIG 163 (722)
T ss_pred ------ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-------------------ceeEEEecCccccCCcccc
Confidence 36677777777777777777765 455666666554 4555566677777777777
Q ss_pred CCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCC
Q 046888 753 NIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLS 832 (1170)
Q Consensus 753 ~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~ 832 (1170)
.+..|..|+.+.|.+. .+|.. +.++.+|+.|++..|++..+|..+..| .|..||++.|++..||..+.+|.
T Consensus 164 ~~~tl~~ld~s~nei~-------slpsq-l~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-------SLPSQ-LGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMR 234 (722)
T ss_pred cchhHHHhhhhhhhhh-------hchHH-hhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhh
Confidence 7777778888777765 45555 777778888888888888888777744 47778888888888888888888
Q ss_pred CCCEEEecCCCCCCCCCCCc------cccceeccccc
Q 046888 833 RLKRLDLSNCSMLQSIPELP------PSLKWLQAGNC 863 (1170)
Q Consensus 833 ~L~~L~L~~c~~l~~lp~l~------~~L~~L~i~~c 863 (1170)
.|++|.|.+|+ +++-|.-. -=.++|++.-|
T Consensus 235 ~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 235 HLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 88888888887 45544311 12355666655
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=2.9e-11 Score=152.06 Aligned_cols=288 Identities=22% Similarity=0.255 Sum_probs=190.3
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCcCccccCCCCC--ccccccc-ccccccceeecCCCCCCCccCCC-CCCCCccccccc
Q 046888 591 EKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSK--VVQIWEG-KKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINL 666 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L 666 (1170)
...|.+.+.+|.+..++....+++|++|-+..|. +..++.. +..++.|++|||++|..+..+|. ++++-+|++|+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 3789999999999999988888899999998886 6666644 67899999999999999999998 788888887766
Q ss_pred cCCcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCC-C-----chhh--hccccEEE
Q 046888 667 WNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL-N-----LESF--LESLKKIN 738 (1170)
Q Consensus 667 ~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~-~-----l~~~--~~~L~~L~ 738 (1170)
++ +.+..+|.++++|++|.+|++..+..+..+|..+..|++|++|.+..-. . +..+ ++.|+.|.
T Consensus 603 ~~--------t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 603 SD--------TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred cC--------CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 65 6678999999999999999999998888888777779999999986532 1 1111 22233333
Q ss_pred ccCcCCcccCccccCCCCCC----EEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-cc-----C-C
Q 046888 739 LGRTTVTELPSSFENIEGLG----TLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EI-----G-C 807 (1170)
Q Consensus 739 L~~~~i~~lp~~l~~l~~L~----~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l-----~-~ 807 (1170)
...... .+-..+..+..|. .+.+.++... ..+.. +..+.+|+.|.+.+|.+.++.. +. . .
T Consensus 675 ~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-------~~~~~-~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~ 745 (889)
T KOG4658|consen 675 ITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-------TLISS-LGSLGNLEELSILDCGISEIVIEWEESLIVLLC 745 (889)
T ss_pred eecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-------eeecc-cccccCcceEEEEcCCCchhhcccccccchhhh
Confidence 322221 1111122222222 2222222221 22222 6788899999999998875321 11 1 1
Q ss_pred CCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCCc-------------ccccee-ccccccccCCCCCCC
Q 046888 808 LPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPELP-------------PSLKWL-QAGNCKRLQSLPEIP 873 (1170)
Q Consensus 808 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~-------------~~L~~L-~i~~c~~L~~l~~~~ 873 (1170)
+++|..+.+.+|..-..+.+..-.++|+.|.+.+|+.++.+.... .++..+ .+.+.+.++.+-..|
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP 825 (889)
T ss_pred HHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc
Confidence 445556666666555666677778999999999999888765321 223333 233333322222222
Q ss_pred CCchhhhhhhhhccccccCCCcccccC
Q 046888 874 SRPEEIDASLLQKLSKYSYDDEVEDVN 900 (1170)
Q Consensus 874 ~~~~~~~~~~L~~L~~~~c~~l~~~~~ 900 (1170)
+.++.+..+.+..||++...|.
T Consensus 826 -----l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 826 -----LSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred -----cCccchhheehhcCcccccCcc
Confidence 2344478888888988886654
No 33
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=4.4e-08 Score=114.59 Aligned_cols=287 Identities=16% Similarity=0.136 Sum_probs=164.6
Q ss_pred CCCCCCccccchhHHHHHHHHhhc--CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC------ceEEEEechhhhhc
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCT--GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE------GKCFIENVREEIEN 251 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~ 251 (1170)
+...++.++||+.++++|...|.. .......+.|+|++|+|||++++++++++....+ ..+|+. ...
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-----~~~ 84 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-----CQI 84 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-----CCC
Confidence 344567899999999999998863 1233467899999999999999999997754322 234443 333
Q ss_pred CcCHHHHHHHHHHHHhc--CcccC-C--CCChhHHHHHHhc--CCCeEEEEeCCCChH-----HHHHHHcccCC-CC--C
Q 046888 252 GVGLVHLHKQVVSLLLG--ERLET-G--GPNIPAYALERLR--RTKVFMVLDDVSEFE-----QLKYLVGWLDG-FC--P 316 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~--~~~~~-~--~~~l~~~l~~~L~--~kk~LlVLDdv~~~~-----~~~~l~~~~~~-~~--~ 316 (1170)
..+...+...++.++.. ..... + ...+...+.+.+. +++++||||+++... .+..+...... .. .
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 44556778888888852 11111 1 1122233344443 567899999997661 13333322111 11 2
Q ss_pred CcEEEEEeCChhHHHHhC----CC-CcceEeecCCCHhHHHHHHHHHHh---ccCCCChhHHHHHHHHHHHhCCChh-HH
Q 046888 317 GSRIVVTTRDKQVLRKQG----VK-DEHVYEVERLNEDEGLELFYKYAF---RQNHRPEHLTVLSKKAVRYAEGNPL-AL 387 (1170)
Q Consensus 317 gsrIIiTTR~~~v~~~~~----~~-~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~GlPL-Al 387 (1170)
.-.+|.+|.+........ .. ....+.+++.+.+|..+++..++- ......++..+...+++....|.|- |+
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 234555554443322110 00 114689999999999999998863 1222233334455566777778874 43
Q ss_pred HHHHHHh-----cC---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCC----CCHHHH---
Q 046888 388 EVLGSSL-----QQ---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKG----EGKDRV--- 452 (1170)
Q Consensus 388 ~~lg~~L-----~~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~----~~~~~l--- 452 (1170)
.++-... .+ .+.+..+.+.+.+. .....-+...||.+++.++..++..-+. .....+
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~--------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIE--------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3332211 11 34555555555442 1223446678999998877776643221 112222
Q ss_pred -HHHHhhCCCC------HHHHHHHHHhcCCcEEe
Q 046888 453 -LMLLHDRQYN------VTQALSVLIDKSLIIEH 479 (1170)
Q Consensus 453 -~~l~~~~~~~------~~~~l~~L~~~sLi~~~ 479 (1170)
..+....|.. ...++..|...|+|...
T Consensus 317 y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 317 YKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2233333322 24568888999999865
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=4.6e-09 Score=133.01 Aligned_cols=308 Identities=15% Similarity=0.163 Sum_probs=186.6
Q ss_pred ccccchhHHHHHHHHhhcC-CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCc---eEEEEechhhhhcCcCHHHHHHH
Q 046888 186 GLVGLSSRIECIKSLLCTG-LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEG---KCFIENVREEIENGVGLVHLHKQ 261 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~~~~~l~~~ 261 (1170)
.++||+.+++.|...+... .....++.+.|.+|||||+|+++|...+..++.. ..|-. ... ...-..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~-~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FER-NIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccC-CCchHHHHHHHHH
Confidence 3799999999999888743 3456799999999999999999999987655211 11110 000 0011112223333
Q ss_pred HHHHHhcCcccC------------------------------C---------CCChhH--------HHHHHh-cCCCeEE
Q 046888 262 VVSLLLGERLET------------------------------G---------GPNIPA--------YALERL-RRTKVFM 293 (1170)
Q Consensus 262 ll~~l~~~~~~~------------------------------~---------~~~l~~--------~l~~~L-~~kk~Ll 293 (1170)
++.++..+.... + ....+. .+.... +.+++++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 333332221100 1 000110 111112 3469999
Q ss_pred EEeCCCChHH-----HHHHHcccC--C-CCCCcEEEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC
Q 046888 294 VLDDVSEFEQ-----LKYLVGWLD--G-FCPGSRIVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR 365 (1170)
Q Consensus 294 VLDdv~~~~~-----~~~l~~~~~--~-~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1170)
|+||+.-.+. ++.+..... . .....-.+.|.+...-.-.........+.+.||+..+..++........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 9999943322 333333322 0 0011123334443311111222234789999999999999998876332
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHHHHHhcCC-------CHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHh
Q 046888 366 PEHLTVLSKKAVRYAEGNPLALEVLGSSLQQK-------SKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFL 438 (1170)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~-------~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl 438 (1170)
.....+....|+++.+|+|+.+..+-..+... +...|+.-...+...+..+.+.+.+....+.||...++++.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22334567789999999999999998888652 34567666666655544445666789999999999999999
Q ss_pred hcccccCCCCHHHHHHHHhhCCCCHH-HHHHHHHhcCCcEEe---------CCeE---EehHHHHHHHHHHHhh
Q 046888 439 DIACFFKGEGKDRVLMLLHDRQYNVT-QALSVLIDKSLIIEH---------NNRL---HMHELLQEMGQEIVRQ 499 (1170)
Q Consensus 439 ~~a~f~~~~~~~~l~~l~~~~~~~~~-~~l~~L~~~sLi~~~---------~~~~---~mHdll~~~~~~i~~~ 499 (1170)
..||+.+.++.+.+..++........ ...+.|.+ ++|.+. .... ..|+.+|+.+....-+
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999999999998886444333 33444444 444432 1112 4688888888765543
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=2.2e-09 Score=122.10 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=148.0
Q ss_pred CccccchhHHHHHHHHhhcC---CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTG---LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQ 261 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1170)
..|||++..+++|..++... ....+.+.++|++|+|||+||+.+++++...+. +.. .........+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-----~~~~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-----GPALEKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-----cchhcCchhHH-H
Confidence 46999999999999888632 233556889999999999999999998754321 111 00001111111 1
Q ss_pred HHHHHhcCcc------cCCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCC
Q 046888 262 VVSLLLGERL------ETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGV 335 (1170)
Q Consensus 262 ll~~l~~~~~------~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 335 (1170)
.+..+..... ..-.......+...+.+.+..+|+|+..+..++.. ...+..-|.+|||...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEecCCccccCHHHHh
Confidence 1111110000 00000011112222223333333333322222111 11234455667776544332111
Q ss_pred CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhc------C---CCHHHHHHHH
Q 046888 336 KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQ------Q---KSKQDWENVL 406 (1170)
Q Consensus 336 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~------~---~~~~~w~~~l 406 (1170)
.....+++++++.+|..+++.+.+..... .-..+....|++.|+|.|-.+..++..+. + .+.+..+
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--- 223 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--- 223 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---
Confidence 11157899999999999999988743222 22244567899999999976655544321 0 0111111
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCHHHHHHHh-hcccccCC-CCHHHHHHHHhhCCCCHHHHHH-HHHhcCCcEEe
Q 046888 407 DNLKQISGASRIYKLLRISYEELTFEEKSIFL-DIACFFKG-EGKDRVLMLLHDRQYNVTQALS-VLIDKSLIIEH 479 (1170)
Q Consensus 407 ~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~~~sLi~~~ 479 (1170)
.....+...|.+|++.++..+. .++.+..+ ...+.+...+......++..++ .|++++||...
T Consensus 224 ----------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 224 ----------KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ----------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 2222245567889998888776 44556433 4567788888777777888888 69999999744
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=2.3e-09 Score=122.80 Aligned_cols=261 Identities=17% Similarity=0.159 Sum_probs=152.7
Q ss_pred CCCCCccccchhHHHHHHHHhhc---CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCT---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|....+|+|++..++.+..++.. .....+.+.|+|++|+||||||+.+++.+...+. +.. ... .. . ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~-~~---~-~~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA-LE---K-PG 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc-cc---C-hH
Confidence 45667899999999999888753 2234567899999999999999999998754321 111 000 00 0 01
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH--HHHHHHcccC-------------------CCCC
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE--QLKYLVGWLD-------------------GFCP 316 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~--~~~~l~~~~~-------------------~~~~ 316 (1170)
....++.. + ++.-+|++|+++... ..+.+...+. ...+
T Consensus 92 ~l~~~l~~--------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 92 DLAAILTN--------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHHh--------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 11111111 1 123456666664321 1111111100 0112
Q ss_pred CcEEEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcC
Q 046888 317 GSRIVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQ 396 (1170)
Q Consensus 317 gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~ 396 (1170)
.+-|..|+|...+.......-...+++++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 344566777554332211111157899999999999999988754322 22345678999999999965554444321
Q ss_pred CCHHHHHHHHHHHhhcCC--hhhHHHHHHHHHhcCCHHHHHHHh-hcccccCC-CCHHHHHHHHhhCCCCHHHHHH-HHH
Q 046888 397 KSKQDWENVLDNLKQISG--ASRIYKLLRISYEELTFEEKSIFL-DIACFFKG-EGKDRVLMLLHDRQYNVTQALS-VLI 471 (1170)
Q Consensus 397 ~~~~~w~~~l~~l~~~~~--~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~ 471 (1170)
.|.... .-..... .....+.+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|+
T Consensus 228 ----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 228 ----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 111110 0000000 022334455667789988888886 55556544 4677888888777777787888 999
Q ss_pred hcCCcEEe
Q 046888 472 DKSLIIEH 479 (1170)
Q Consensus 472 ~~sLi~~~ 479 (1170)
+.+||...
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999754
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=2.1e-08 Score=111.95 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=108.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHH---
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALE--- 284 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~--- 284 (1170)
..++.|+|++|+||||+|+.+++.+...=-..+++. ....+...++..+...++..............+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~------~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV------NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee------CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999987653211122332 22334556777777666543222111111222222
Q ss_pred -H-hcCCCeEEEEeCCCCh--HHHHHHHcccC---CCCCCcEEEEEeCChhHHHHhCC--------CCcceEeecCCCHh
Q 046888 285 -R-LRRTKVFMVLDDVSEF--EQLKYLVGWLD---GFCPGSRIVVTTRDKQVLRKQGV--------KDEHVYEVERLNED 349 (1170)
Q Consensus 285 -~-L~~kk~LlVLDdv~~~--~~~~~l~~~~~---~~~~gsrIIiTTR~~~v~~~~~~--------~~~~~~~l~~L~~~ 349 (1170)
. ..+++.++|+||++.. ..++.+..... .......|++|.... ....... .....+++++|+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2 2567899999999874 34554432211 112223456665543 2111110 01246889999999
Q ss_pred HHHHHHHHHHhccCC--CChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 046888 350 EGLELFYKYAFRQNH--RPEHLTVLSKKAVRYAEGNPLALEVLGSSL 394 (1170)
Q Consensus 350 ea~~Lf~~~af~~~~--~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 394 (1170)
|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887643221 112234678899999999999999988876
No 38
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.94 E-value=4.3e-09 Score=114.74 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=100.7
Q ss_pred cccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH------HH
Q 046888 187 LVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL------HK 260 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l------~~ 260 (1170)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+..... .. ....... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE-SN-ESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB-SH-HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc-hh-hhHHHHHHHHHHHHH
Confidence 799999999999998653 35789999999999999999999987443334444432211 00 0001111 11
Q ss_pred HHHHHHhcCccc-----------CCCCChhHHHHHHhc--CCCeEEEEeCCCChH-------H-HHHHHcccCC--CCCC
Q 046888 261 QVVSLLLGERLE-----------TGGPNIPAYALERLR--RTKVFMVLDDVSEFE-------Q-LKYLVGWLDG--FCPG 317 (1170)
Q Consensus 261 ~ll~~l~~~~~~-----------~~~~~l~~~l~~~L~--~kk~LlVLDdv~~~~-------~-~~~l~~~~~~--~~~g 317 (1170)
.+...+...... .........+.+.+. +++++||+||++... . +..+...+.. ....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111112111000 011111222233333 346999999996544 1 2223222221 1233
Q ss_pred cEEEEEeCChhHHHHh------CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046888 318 SRIVVTTRDKQVLRKQ------GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEV 389 (1170)
Q Consensus 318 srIIiTTR~~~v~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 389 (1170)
-.+|+++....+.... -......+.+++|+.+++++++...+-.. ..-....+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3455555555444430 01122459999999999999998876332 11012344568999999999998764
No 39
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=5.8e-09 Score=107.09 Aligned_cols=143 Identities=25% Similarity=0.389 Sum_probs=85.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCC-----ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFE-----GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYAL 283 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~ 283 (1170)
|++.|+|.+|+||||+++.++.++..... ...+....+. .........+...+........ ......+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRD-ISDSNNSRSLADLLFDQLPESI-----APIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehh-hhhccccchHHHHHHHhhccch-----hhhHHHHH
Confidence 58999999999999999999998765542 2233333443 2222211233333333322111 11111111
Q ss_pred H-HhcCCCeEEEEeCCCChHH---------HHHHH-cccCC-CCCCcEEEEEeCChhH--HH-HhCCCCcceEeecCCCH
Q 046888 284 E-RLRRTKVFMVLDDVSEFEQ---------LKYLV-GWLDG-FCPGSRIVVTTRDKQV--LR-KQGVKDEHVYEVERLNE 348 (1170)
Q Consensus 284 ~-~L~~kk~LlVLDdv~~~~~---------~~~l~-~~~~~-~~~gsrIIiTTR~~~v--~~-~~~~~~~~~~~l~~L~~ 348 (1170)
. ....++++||+|++|+... +..++ ..+.. ..++.+||||+|.... .. ..... ..+++++|++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~ 152 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSE 152 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCH
Confidence 2 2357899999999966432 12222 22222 3578999999998866 22 22222 6899999999
Q ss_pred hHHHHHHHHHH
Q 046888 349 DEGLELFYKYA 359 (1170)
Q Consensus 349 ~ea~~Lf~~~a 359 (1170)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997764
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=7.4e-11 Score=133.29 Aligned_cols=191 Identities=21% Similarity=0.320 Sum_probs=127.0
Q ss_pred eeEEEecCCCCCCCCCCC-CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 593 LRYLHLHKYPLRTLPSNF-KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
-...+++.|.+..+|..+ .+..|..|.|.+|.+..+|..+.++..|.+|||+.|++....+.+..++ |+.|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl------- 148 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL------- 148 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeE-------
Confidence 346788999999999887 6788999999999999999999999999999999998533222232222 2222
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSF 751 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l 751 (1170)
-+++|+++.+|..|+.+.+|..|+.+.|. +..+|+.+
T Consensus 149 -i~sNNkl~~lp~~ig~~~tl~~ld~s~ne------------------------------------------i~slpsql 185 (722)
T KOG0532|consen 149 -IVSNNKLTSLPEEIGLLPTLAHLDVSKNE------------------------------------------IQSLPSQL 185 (722)
T ss_pred -EEecCccccCCcccccchhHHHhhhhhhh------------------------------------------hhhchHHh
Confidence 22334445555555555555555555443 33344444
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccc---
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSI--- 828 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l--- 828 (1170)
+.+.+|+.|++..|.+. .+|.. +.. -.|..||++.|+++.+|-.+..|+.|++|-|.+|.+++=|..+
T Consensus 186 ~~l~slr~l~vrRn~l~-------~lp~E-l~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLE-------DLPEE-LCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred hhHHHHHHHHHhhhhhh-------hCCHH-HhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence 44444455555555443 23333 222 2477888888888888888888888888888888888777654
Q ss_pred cCCCCCCEEEecCCC
Q 046888 829 KQLSRLKRLDLSNCS 843 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~ 843 (1170)
+...-.++|+..-|+
T Consensus 257 GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 257 GKVHIFKYLSTQACQ 271 (722)
T ss_pred cceeeeeeecchhcc
Confidence 334556788888774
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=1.9e-09 Score=127.48 Aligned_cols=146 Identities=32% Similarity=0.506 Sum_probs=96.9
Q ss_pred CcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCC
Q 046888 677 TAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEG 756 (1170)
Q Consensus 677 n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~ 756 (1170)
|.+..+|..++.+++|+.|++++|+ +..+|...+.+ ..|+.|++++|.+..+|..+..+.+
T Consensus 150 N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~------------------~~L~~L~ls~N~i~~l~~~~~~~~~ 210 (394)
T COG4886 150 NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNL------------------SNLNNLDLSGNKISDLPPEIELLSA 210 (394)
T ss_pred cchhhhhhhhhccccccccccCCch-hhhhhhhhhhh------------------hhhhheeccCCccccCchhhhhhhh
Confidence 4445555555666666666666654 33333332222 3355566666777777776666667
Q ss_pred CCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCE
Q 046888 757 LGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKR 836 (1170)
Q Consensus 757 L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 836 (1170)
|++|.+++|... ..+.. +.++.++..|.+.+|.+..++..++.+++|+.|++++|.++.++. +..+.+|+.
T Consensus 211 L~~l~~~~N~~~-------~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~ 281 (394)
T COG4886 211 LEELDLSNNSII-------ELLSS-LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRE 281 (394)
T ss_pred hhhhhhcCCcce-------ecchh-hhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCE
Confidence 778888777532 22222 666777777778888877777778888888888888888888875 788888888
Q ss_pred EEecCCCCCCCCCC
Q 046888 837 LDLSNCSMLQSIPE 850 (1170)
Q Consensus 837 L~L~~c~~l~~lp~ 850 (1170)
|+++++.....+|.
T Consensus 282 L~~s~n~~~~~~~~ 295 (394)
T COG4886 282 LDLSGNSLSNALPL 295 (394)
T ss_pred EeccCccccccchh
Confidence 88888876655553
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.9e-10 Score=124.12 Aligned_cols=64 Identities=28% Similarity=0.444 Sum_probs=37.2
Q ss_pred cCCCCCCCEEeCCCCCCCC--CCcc-----cCCCCCCCEEECcCCCCcccc--ccccCCCCCCEEEecCCCCC
Q 046888 782 LSGLFSLNWLNLNNCALTA--IPEE-----IGCLPSLEWLELRENNFESLP--VSIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 782 l~~l~~L~~L~L~~~~l~~--ip~~-----l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l 845 (1170)
...++.|+.|+++.|.+.+ +|+. ...+++|++|++..|++..++ ..+..+++|+.|.+..|...
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 3455555556666665554 2332 345677777777777776554 23445666677766666543
No 43
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.86 E-value=1.4e-07 Score=113.03 Aligned_cols=296 Identities=17% Similarity=0.208 Sum_probs=187.9
Q ss_pred CCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 179 MSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
.+|..+.+.|-|..-+..+... .+.|.+.|..++|.|||||+-++..+. ..-..+.|+.- ...+.+..+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wlsl----de~dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLSL----DESDNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEeec----CCccCCHHHH
Confidence 4566678888888766666543 468999999999999999999998843 44456788862 2235566777
Q ss_pred HHHHHHHHhcCcccC--------------CCCChhHHHHHHhc--CCCeEEEEeCCCC---h---HHHHHHHcccCCCCC
Q 046888 259 HKQVVSLLLGERLET--------------GGPNIPAYALERLR--RTKVFMVLDDVSE---F---EQLKYLVGWLDGFCP 316 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~--------------~~~~l~~~l~~~L~--~kk~LlVLDdv~~---~---~~~~~l~~~~~~~~~ 316 (1170)
...++..+..-.... ....+...+...+. .++..+||||..- . ..++.++...| +
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---E 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---C
Confidence 777777776332221 11112222333332 4689999999743 2 23555655444 7
Q ss_pred CcEEEEEeCChhHHHH--hCCCCcceEee----cCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 317 GSRIVVTTRDKQVLRK--QGVKDEHVYEV----ERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 317 gsrIIiTTR~~~v~~~--~~~~~~~~~~l----~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
+-.+|||||.+--+.. +.+. ....++ -.|+.+|+-++|.... ..+ -.+.-++.+.+..+|-+-|+..+
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr-~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~--Ld~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLR-DELLEIGSEELRFDTEEAAAFLNDRG---SLP--LDAADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred CeEEEEEeccCCCCcccceeeh-hhHHhcChHhhcCChHHHHHHHHHcC---CCC--CChHHHHHHHhhcccHHHHHHHH
Confidence 8899999998732211 1111 123333 3589999999997764 111 12334678999999999999999
Q ss_pred HHHhcC-CCHHHHHHHHHHHhhcCChhhHHH-HHHHHHhcCCHHHHHHHhhcccccCCCCHHHHHHHHhhCCCCHHHHHH
Q 046888 391 GSSLQQ-KSKQDWENVLDNLKQISGASRIYK-LLRISYEELTFEEKSIFLDIACFFKGEGKDRVLMLLHDRQYNVTQALS 468 (1170)
Q Consensus 391 g~~L~~-~~~~~w~~~l~~l~~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~l~~~~~~~~~~~l~ 468 (1170)
+=.+++ .+.+.-...+. .. . +-|.+ ...--+|.||++.|..++-+|++..- . +.+..-+.. .-+....++
T Consensus 234 aLa~~~~~~~~q~~~~Ls---G~-~-~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~-~eL~~~Ltg-~~ng~amLe 305 (894)
T COG2909 234 ALALRNNTSAEQSLRGLS---GA-A-SHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF-N-DELCNALTG-EENGQAMLE 305 (894)
T ss_pred HHHccCCCcHHHHhhhcc---ch-H-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-h-HHHHHHHhc-CCcHHHHHH
Confidence 888873 33332222111 11 0 12222 23344789999999999999988431 1 122222221 123455689
Q ss_pred HHHhcCCcEEe----CCeEEehHHHHHHHHHHHhhhc
Q 046888 469 VLIDKSLIIEH----NNRLHMHELLQEMGQEIVRQED 501 (1170)
Q Consensus 469 ~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~ 501 (1170)
.|.+++|.-.- ++.|+.|.++.+|.+...+.+.
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 99999987643 6789999999999998877653
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=7.2e-09 Score=122.66 Aligned_cols=177 Identities=26% Similarity=0.340 Sum_probs=126.0
Q ss_pred CCeeEEEecCCCCCCCCCCCCCC--cCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccC
Q 046888 591 EKLRYLHLHKYPLRTLPSNFKPK--NLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWN 668 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~ 668 (1170)
+.+..|++.++.+.++|...... +|+.|++++|.+..+|..+..+++|+.|++++|++....+..+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 36889999999999998877553 8999999999999998888899999999999998543333333666666665554
Q ss_pred CcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccC
Q 046888 669 CTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELP 748 (1170)
Q Consensus 669 c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp 748 (1170)
|.+..+|..++.+..|+.|.+++|. ....+..+.+++++..|.+.+ |.+..++
T Consensus 196 --------N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~------------------n~~~~~~ 248 (394)
T COG4886 196 --------NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN------------------NKLEDLP 248 (394)
T ss_pred --------CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC------------------ceeeecc
Confidence 7778888877777778888888875 334444466666666555443 4444556
Q ss_pred ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc
Q 046888 749 SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE 803 (1170)
Q Consensus 749 ~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~ 803 (1170)
..+..+++|+.|++++|.+.. ++. +..+.+|+.|+++++.+..++.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~-------i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS-------ISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceeccccccccc-------ccc--ccccCccCEEeccCccccccch
Confidence 667777777777777777653 333 5666777777777777766443
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=3.2e-09 Score=110.97 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=45.7
Q ss_pred cccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc
Q 046888 670 THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS 749 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~ 749 (1170)
+.+||++|.|+.+..++.-+++++.|+++.|..... . ++..|.+|+.|+ |++|.++++-.
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LD------------------LS~N~Ls~~~G 346 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLD------------------LSGNLLAECVG 346 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeee-h-hhhhcccceEee------------------cccchhHhhhh
Confidence 344556677788888888888888888888764321 1 133344444333 33444444444
Q ss_pred cccCCCCCCEEEccCCCCC
Q 046888 750 SFENIEGLGTLGLERSQLP 768 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~ 768 (1170)
+-.++-+.++|.|++|.+.
T Consensus 347 wh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hHhhhcCEeeeehhhhhHh
Confidence 4445556666666666543
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.71 E-value=2.8e-08 Score=110.41 Aligned_cols=282 Identities=23% Similarity=0.275 Sum_probs=188.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
...|.+.++|.|||||||++-.+.. ++..|...+++.+.+. +. +...+...+...+.-...+ .+.....+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~p-it---D~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAP-IT---DPALVFPTLAGALGLHVQP--GDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeeccc-cC---chhHhHHHHHhhccccccc--chHHHHHHHHH
Confidence 3568899999999999999999999 8888988877765444 32 2333333333333222111 11222344577
Q ss_pred hcCCCeEEEEeCCCCh-HHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEeecCCCHh-HHHHHHHHHHhccC
Q 046888 286 LRRTKVFMVLDDVSEF-EQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEVERLNED-EGLELFYKYAFRQN 363 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~-~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~ 363 (1170)
..+++.++|+||-.+. ++-..+...+....+.-+|+.|+|+. ..+.+...+.++.|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~-----~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREA-----ILVAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhh-----hcccccccccCCccccCCchhHHHHHHHHHhc
Confidence 8899999999998554 23333444444445566799999964 33444578899999877 79999988763221
Q ss_pred C---CChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCHHHHHHHHHH----Hhhc-----CChhhHHHHHHHHHhcCCH
Q 046888 364 H---RPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQKSKQDWENVLDN----LKQI-----SGASRIYKLLRISYEELTF 431 (1170)
Q Consensus 364 ~---~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~----l~~~-----~~~~~i~~~l~~sy~~L~~ 431 (1170)
. ...........|.+...|.|++|...++..+.....+....+.. +... +..+.....+..||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1 12333456778999999999999999999988766655444432 2221 1124567789999999999
Q ss_pred HHHHHHhhcccccCCCCHHHHHHHHhhC-----CCCHHHHHHHHHhcCCcEEe----CCeEEehHHHHHHHHHHHhh
Q 046888 432 EEKSIFLDIACFFKGEGKDRVLMLLHDR-----QYNVTQALSVLIDKSLIIEH----NNRLHMHELLQEMGQEIVRQ 499 (1170)
Q Consensus 432 ~~k~~fl~~a~f~~~~~~~~l~~l~~~~-----~~~~~~~l~~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~ 499 (1170)
.++-.|-.++.|...++.+.....-... .+..-..+-.+++++++... .-+++.-+-.+.|+.+...+
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888776333222222 22334557788999998766 23466666677776666554
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=6.6e-09 Score=105.56 Aligned_cols=104 Identities=27% Similarity=0.449 Sum_probs=42.0
Q ss_pred ccccEEEccCcCCcccCcccc-CCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCccc-CCCC
Q 046888 732 ESLKKINLGRTTVTELPSSFE-NIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLP 809 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l-~~l~ 809 (1170)
..+++|+|.+|.|+.+. .++ .+.+|+.|+|++|.+.. ++. +..++.|+.|++++|.|+++.+.+ ..++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-------l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-------LEG--LPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---------TT------TT--EEE--SS---S-CHHHHHH-T
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-------ccC--ccChhhhhhcccCCCCCCccccchHHhCC
Confidence 34677788888888774 455 57899999999999874 332 677899999999999999987655 3689
Q ss_pred CCCEEECcCCCCcccc--ccccCCCCCCEEEecCCCCC
Q 046888 810 SLEWLELRENNFESLP--VSIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 810 ~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l 845 (1170)
+|+.|+|++|++..+. ..+..+++|+.|+|.+|+..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999999999887553 35778999999999999854
No 48
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=1.8e-06 Score=104.16 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=137.6
Q ss_pred CCCCCCccccchhHHHHHHHHhhc---CCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-----CC--ceEEEEechhhh
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCT---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-----FE--GKCFIENVREEI 249 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~ 249 (1170)
+...++.++||+.++++|...|.. +.....++.|+|++|.|||+.++.|.+++... .+ ..+++. +
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-----C 824 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-----G 824 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-----C
Confidence 345678999999999999988863 23334677899999999999999999876432 12 134443 2
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccCCCC--ChhHHHHHHhc---CCCeEEEEeCCCChH--HHHHHHcccCCC-CCCcEEE
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLETGGP--NIPAYALERLR---RTKVFMVLDDVSEFE--QLKYLVGWLDGF-CPGSRIV 321 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~--~l~~~l~~~L~---~kk~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsrII 321 (1170)
........+...+..++.+.....+.. .+...+...+. +...+||||+|+... +-+.|...+.|. ..+++|+
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 223456667777777775544332222 12222223331 224589999997532 112222222221 2456655
Q ss_pred E--EeCChh----HHHHhCCC-CcceEeecCCCHhHHHHHHHHHHhcc-CC-CChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046888 322 V--TTRDKQ----VLRKQGVK-DEHVYEVERLNEDEGLELFYKYAFRQ-NH-RPEHLTVLSKKAVRYAEGNPLALEVLGS 392 (1170)
Q Consensus 322 i--TTR~~~----v~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~af~~-~~-~~~~~~~~~~~i~~~~~GlPLAl~~lg~ 392 (1170)
| +|.+.. +....... ....+..++.+.++-.+++..++-.. .. .++..+-+|+.++...|..=.||.++-.
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 4 332211 11111110 11346679999999999999988432 12 2333444445444444555667766654
Q ss_pred HhcC-----CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcc
Q 046888 393 SLQQ-----KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIA 441 (1170)
Q Consensus 393 ~L~~-----~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 441 (1170)
+... ...+....+..++.. .. +.-....||.++|-+++-++
T Consensus 985 AgEikegskVT~eHVrkAleeiE~----sr----I~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFD----SP----LTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHh----hh----HHHHHHcCCHHHHHHHHHHH
Confidence 4432 133344444433321 11 22334678888887666444
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=9.3e-09 Score=113.48 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=53.2
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC--cccCCCCCCCEEECcCCCCccc--cc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRENNFESL--PV 826 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip--~~l~~l~~L~~L~L~~n~l~~l--p~ 826 (1170)
+..+++|+.|+|..|..... ...+ ...++.|+.|+|++|++.+++ ...+.++.|+.|+++.|.+.++ |+
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~----~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d 290 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILI----KATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD 290 (505)
T ss_pred HHhCCcHHHhhhhcccccce----ecch---hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC
Confidence 34556666666666642110 0111 334556777777777777655 4566777777777777777643 43
Q ss_pred c-----ccCCCCCCEEEecCCCC
Q 046888 827 S-----IKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 827 ~-----l~~l~~L~~L~L~~c~~ 844 (1170)
. ...+++|++|++..|+.
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccchhhhcccccceeeecccCcc
Confidence 3 35677777777777764
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=7.9e-09 Score=108.09 Aligned_cols=102 Identities=25% Similarity=0.316 Sum_probs=90.3
Q ss_pred cccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCC
Q 046888 733 SLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLE 812 (1170)
Q Consensus 733 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~ 812 (1170)
.|++|+|++|.|+.+..++.-++.++.|+++.|.+.. +.. +..+++|+.|||++|.++++..|-..+-+++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-------v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-------VQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceee-------ehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 4999999999999999999999999999999999864 222 6778999999999999999888877888999
Q ss_pred EEECcCCCCccccccccCCCCCCEEEecCCCC
Q 046888 813 WLELRENNFESLPVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 813 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 844 (1170)
.|.|++|.++++. .+..|-+|..||+++|+.
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheeccccccch
Confidence 9999999999887 788999999999999973
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=2.3e-06 Score=101.08 Aligned_cols=179 Identities=18% Similarity=0.278 Sum_probs=107.2
Q ss_pred CCCCCccccchhHHHH---HHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIEC---IKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|...+.+||.+..+.. +.+++.. .....+.++|++|+||||||+.+++.....|. .+.. . ..+...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a-----~-~~~~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA-----V-TSGVKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec-----c-cccHHH
Confidence 3445678999887666 7777743 34567889999999999999999987654432 1110 0 112222
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEE--EeCChh--HHH
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVV--TTRDKQ--VLR 331 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi--TTR~~~--v~~ 331 (1170)
+ ++++..... ....+++.+|++|+++.. .+.+.|+..+. .|..++| ||.+.. +..
T Consensus 77 i-r~ii~~~~~---------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 L-REVIEEARQ---------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred H-HHHHHHHHH---------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 1 222221110 112457889999999754 45566655443 3455554 344332 111
Q ss_pred HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCC-hhHHHHHHHHHHHhCCChhHHHHH
Q 046888 332 KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRP-EHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 332 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
... .....+++++++.++..+++.+.+....... .-..+....+++.++|.+..+.-+
T Consensus 138 aL~-SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 138 ALL-SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHh-ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 111 1226899999999999999988653311111 222455678899999998766443
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=2.9e-08 Score=100.94 Aligned_cols=137 Identities=23% Similarity=0.316 Sum_probs=45.5
Q ss_pred CCcccccccccccccccceeeccccccccccccccc-CCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCC
Q 046888 676 DTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSIC-KLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENI 754 (1170)
Q Consensus 676 ~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l 754 (1170)
.+.|+..|. +.+..++++|+|.+|.... +. .++ .+.+| +.|++++|.|+.++ .+..+
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L------------------~~L~Ls~N~I~~l~-~l~~L 63 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQIST-IE-NLGATLDKL------------------EVLDLSNNQITKLE-GLPGL 63 (175)
T ss_dssp ---------------------------------S--TT-TT--------------------EEE-TTS--S--T-T----
T ss_pred ccccccccc-ccccccccccccccccccc-cc-chhhhhcCC------------------CEEECCCCCCcccc-CccCh
Confidence 344455554 4455567777777765322 21 232 23444 44445555666654 46678
Q ss_pred CCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC--cccCCCCCCCEEECcCCCCccccc----cc
Q 046888 755 EGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRENNFESLPV----SI 828 (1170)
Q Consensus 755 ~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip--~~l~~l~~L~~L~L~~n~l~~lp~----~l 828 (1170)
++|+.|++++|.+.. +.......+++|+.|+|++|+|.++- ..+..+++|+.|+|.+|.++.-+. .+
T Consensus 64 ~~L~~L~L~~N~I~~-------i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi 136 (175)
T PF14580_consen 64 PRLKTLDLSNNRISS-------ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVI 136 (175)
T ss_dssp TT--EEE--SS---S--------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred hhhhhcccCCCCCCc-------cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHH
Confidence 888888888888764 32221235788889999988887643 456778999999999998875542 35
Q ss_pred cCCCCCCEEEecC
Q 046888 829 KQLSRLKRLDLSN 841 (1170)
Q Consensus 829 ~~l~~L~~L~L~~ 841 (1170)
..+|+|+.||-..
T Consensus 137 ~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 137 YKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT-SEETTEE
T ss_pred HHcChhheeCCEE
Confidence 6778888877543
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.58 E-value=5.1e-07 Score=99.75 Aligned_cols=171 Identities=18% Similarity=0.260 Sum_probs=102.3
Q ss_pred CCccccchhHHH---HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 184 SKGLVGLSSRIE---CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 184 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
-+.+||-+..+. -|.+++. .+.+.-.-+||++|+||||||+.++......|...-= -..++..+.+
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA---------v~~gvkdlr~ 91 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA---------VTSGVKDLRE 91 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc---------ccccHHHHHH
Confidence 344455443331 2344442 3456677899999999999999999977766543211 1233444333
Q ss_pred HHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCC--ChHHHHHHHcccCCCCCCcEEEE--EeCChhH--HHHhC
Q 046888 261 QVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVS--EFEQLKYLVGWLDGFCPGSRIVV--TTRDKQV--LRKQG 334 (1170)
Q Consensus 261 ~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIi--TTR~~~v--~~~~~ 334 (1170)
.+ .+. -..+..+++.+|.+|.|. +..|-+.|+.... .|.-|+| ||-++.. -...
T Consensus 92 i~-e~a---------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~AL- 151 (436)
T COG2256 92 II-EEA---------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPAL- 151 (436)
T ss_pred HH-HHH---------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHH-
Confidence 22 211 114456899999999995 3456666665443 6766665 6666522 1111
Q ss_pred CCCcceEeecCCCHhHHHHHHHHHHhccCCC-----ChhHHHHHHHHHHHhCCChh
Q 046888 335 VKDEHVYEVERLNEDEGLELFYKYAFRQNHR-----PEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 335 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-----~~~~~~~~~~i~~~~~GlPL 385 (1170)
.....++++++|+.+|-.+++.+-+-..... ..-.++....+++.++|---
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1123799999999999999998844222111 11223455677888888643
No 54
>PRK06893 DNA replication initiation factor; Validated
Probab=98.55 E-value=1.6e-06 Score=93.81 Aligned_cols=150 Identities=16% Similarity=0.279 Sum_probs=91.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
.+.+.|+|.+|+|||+||+++++.+..+...+.|+. .... .....++ .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-----~~~~---~~~~~~~--------------------~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-----LSKS---QYFSPAV--------------------LENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-----HHHh---hhhhHHH--------------------Hhhcc
Confidence 467899999999999999999998766666667775 2110 0000011 12222
Q ss_pred CCCeEEEEeCCCCh---HHHH-HHHcccCCC-CCCcEEEEEeCCh----------hHHHHhCCCCcceEeecCCCHhHHH
Q 046888 288 RTKVFMVLDDVSEF---EQLK-YLVGWLDGF-CPGSRIVVTTRDK----------QVLRKQGVKDEHVYEVERLNEDEGL 352 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~---~~~~-~l~~~~~~~-~~gsrIIiTTR~~----------~v~~~~~~~~~~~~~l~~L~~~ea~ 352 (1170)
+.-+|||||++.. .+|+ .+...++.. ..|+++||+|.+. .+...++.. ..+++++++.++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHH
Confidence 2348999999763 3333 233222221 2456665554433 444444433 68999999999999
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 353 ELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 353 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
+++.+.++...- .-.++...-+++.+.|..-++..+
T Consensus 168 ~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 999999865432 122345566777777665544433
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=3.3e-09 Score=114.11 Aligned_cols=193 Identities=23% Similarity=0.304 Sum_probs=115.0
Q ss_pred ccccccccceeecCCCCCCCccCCC-----CCCCCccccccccCCcccccCCCccc----c--cccccccccccceeecc
Q 046888 630 EGKKKAFKLKSINLSHSQYLIRIPD-----PSEAPNLERINLWNCTHLNLCDTAIE----E--VPSSVECLTNLEYLYIN 698 (1170)
Q Consensus 630 ~~~~~l~~L~~L~Ls~~~~l~~~p~-----~~~l~~L~~L~L~~c~~L~l~~n~i~----~--lp~~i~~l~~L~~L~L~ 698 (1170)
+.+..+++|++||||.|-+....+. ++++.+|++|.|.+|--=-..+-.+. + ...-++.-++|+.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3345567888888888876544332 45667777777776521100000000 0 01112233444555444
Q ss_pred ccccccccc-----ccccCCCcccEEecCCCCCchhhhccccEEEccCcCCc-----ccCccccCCCCCCEEEccCCCCC
Q 046888 699 RCKRLKRVS-----TSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVT-----ELPSSFENIEGLGTLGLERSQLP 768 (1170)
Q Consensus 699 ~~~~l~~lp-----~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~~ 768 (1170)
+|+ +..-+ ..+.. .+.|+.+.+..|.|. .+...+..+++|++|+|.+|.++
T Consensus 166 rNr-len~ga~~~A~~~~~------------------~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 166 RNR-LENGGATALAEAFQS------------------HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccc-cccccHHHHHHHHHh------------------ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 443 11111 11111 234666666666665 23456788999999999999875
Q ss_pred CcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCccc-CCCCCCCEEECcCCCCc-----cccccccCCCCCCEE
Q 046888 769 HLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEI-GCLPSLEWLELRENNFE-----SLPVSIKQLSRLKRL 837 (1170)
Q Consensus 769 ~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L 837 (1170)
..-+ ..+.. .++.+++|+.|++++|.+.. +...+ ...|+|+.|.|.+|.++ .+-.++...+.|+.|
T Consensus 227 ~egs--~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL 303 (382)
T KOG1909|consen 227 LEGS--VALAK-ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL 303 (382)
T ss_pred hHHH--HHHHH-HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence 4211 12222 26678899999999998875 32333 34789999999999887 234456678999999
Q ss_pred EecCCCC
Q 046888 838 DLSNCSM 844 (1170)
Q Consensus 838 ~L~~c~~ 844 (1170)
+|++|..
T Consensus 304 nLngN~l 310 (382)
T KOG1909|consen 304 NLNGNRL 310 (382)
T ss_pred cCCcccc
Confidence 9999974
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=5.4e-07 Score=102.32 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=26.9
Q ss_pred ccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcC
Q 046888 691 NLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTT 743 (1170)
Q Consensus 691 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~ 743 (1170)
+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|.+|+.|++.++.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~ 123 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIKGSA 123 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEEeCCCC
Confidence 34555555555444444433 2355566666665555556666666655443
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=4.7e-06 Score=90.39 Aligned_cols=172 Identities=16% Similarity=0.269 Sum_probs=101.6
Q ss_pred Ccccc--chhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHH
Q 046888 185 KGLVG--LSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQV 262 (1170)
Q Consensus 185 ~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1170)
++|++ .+..++.+.+++.. ...+.|.|+|.+|+|||+||+.++++........+++. ... ... ....+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~-~~~------~~~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAE-LAQ------ADPEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHH-HHH------hHHHH
Confidence 45552 44567777777542 34578999999999999999999997765544455554 111 110 00011
Q ss_pred HHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH---H-HHHHHcccCC-CCCCcEEEEEeCChh---------
Q 046888 263 VSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE---Q-LKYLVGWLDG-FCPGSRIVVTTRDKQ--------- 328 (1170)
Q Consensus 263 l~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIIiTTR~~~--------- 328 (1170)
+ +.+.+ .-+||+||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 ~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 85 L--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred H--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 1 11222 2389999996542 1 3333332221 123457899887532
Q ss_pred HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046888 329 VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLG 391 (1170)
Q Consensus 329 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 391 (1170)
+....... ..+++++++.++...++...+-+... .-..+..+.+++.+.|+|..+..+.
T Consensus 144 L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 144 LRTRLAWG--LVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHhcC--eeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 11122112 57999999999999998876532221 1223445677778888887766554
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.6e-05 Score=96.21 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=112.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 239 (1170)
|...+++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.+-.. |...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 4456789999999999999986442 24566799999999999999999865321 1111
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
+.+. .....++..+ ++++..... .-..++.-++|||+++.. ..+..|+..+......
T Consensus 91 iEID-----Aas~rgVDdI-ReLIe~a~~---------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMD-----AASNRGVDEM-AALLERAVY---------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEec-----ccccccHHHH-HHHHHHHHh---------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 1111 0111111111 111111100 011234457889999765 3467777666655567
Q ss_pred cEEEEEeCChhHH-HHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 046888 318 SRIVVTTRDKQVL-RKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP-LALEVL 390 (1170)
Q Consensus 318 srIIiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~l 390 (1170)
.++|+||.+..-. ... ......+.++.++.++..+.+.+.+-.... .-..+..+.|++.++|.. -|+..+
T Consensus 150 v~FILaTtd~~KIp~TI-rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 150 VKFILATTDPQKIPVTV-LSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred eEEEEEECChhhccchh-hhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7888887766332 221 122378999999999999999887633221 122345677888998865 355443
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=7e-07 Score=110.84 Aligned_cols=110 Identities=23% Similarity=0.425 Sum_probs=86.1
Q ss_pred ccEEEccCcCCc-ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCC
Q 046888 734 LKKINLGRTTVT-ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSL 811 (1170)
Q Consensus 734 L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L 811 (1170)
++.|+|++|.+. .+|..+.++++|+.|+|++|.+.+ .+|.. +..+++|+.|+|++|+++. +|..++.+++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g------~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------NIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC------cCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 566777777776 678888888899999998888765 46655 7888888888888888885 78888888888
Q ss_pred CEEECcCCCCc-cccccccCC-CCCCEEEecCCCCCCCCCC
Q 046888 812 EWLELRENNFE-SLPVSIKQL-SRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 812 ~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~c~~l~~lp~ 850 (1170)
+.|+|++|+++ .+|..+..+ .++..+++.+|+.+...|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 88888888887 778777653 4677888888876665554
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.9e-05 Score=91.56 Aligned_cols=182 Identities=13% Similarity=0.135 Sum_probs=110.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC---------------------ce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE---------------------GK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 239 (1170)
|...++++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.+..... ..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4455689999999999998886432 2456789999999999999999987642110 01
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH--HHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE--QLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~--~~~~l~~~~~~~~~g 317 (1170)
.++. ......... .+++...+.. .-..+++-++|+|+++... .++.++..+....+.
T Consensus 91 ~~~~-----~~~~~~v~~-ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 91 IEID-----AASRTKVEE-MREILDNIYY---------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred EEec-----ccccCCHHH-HHHHHHHHhc---------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1110 000011111 1122211110 0012345689999997653 466777666655566
Q ss_pred cEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 318 SRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.++|++|.+. .+..... .....+++++++.++..+.+...+-..+. .-..+.+..|++.++|.|-.+
T Consensus 150 ~~fIl~t~~~~~l~~tI~-SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 150 IKFILATTDVEKIPKTIL-SRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eEEEEEcCChHhhhHHHH-hhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 6777766544 3332221 12268999999999999988887643221 112345567888999988643
No 61
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.34 E-value=1.2e-06 Score=96.53 Aligned_cols=91 Identities=25% Similarity=0.455 Sum_probs=76.7
Q ss_pred CCCccEEeccccccccCchHHHHHHHHhcCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccC--------
Q 046888 7 SCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASS-------- 77 (1170)
Q Consensus 7 ~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s-------- 77 (1170)
..+.|||||||..- -...++-|.-.|.-+|++||+|- .+..|+ +.+.+.+.|..++.+|.|++||....
T Consensus 610 skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 46899999998764 46788888889999999999998 888887 46689999999999999999998542
Q ss_pred CCcHHHHHHHHHhhhcCCcEEEEEEe
Q 046888 78 KWCPNELVNILKCKNLNGQIVIPIYY 103 (1170)
Q Consensus 78 ~wcl~El~~~~~~~~~~~~~v~pif~ 103 (1170)
.|.-.|++.+++|.++ ++|||-
T Consensus 688 DWVHKEl~~Afe~~KN----IiPI~D 709 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQKN----IIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHhcCC----eeeeec
Confidence 4777788888888765 999983
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.9e-05 Score=95.89 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=112.8
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-C-C-ceEEEEec------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-F-E-GKCFIENV------------ 245 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~-~~~~~~~~------------ 245 (1170)
|.....+||-+..++.|.+++..+. =...+.++|..|+||||+|+.+++.+-.. . . .-|..++.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 3455789999999999998886432 23456899999999999999999876432 1 0 01111100
Q ss_pred hh-hhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEE
Q 046888 246 RE-EIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVV 322 (1170)
Q Consensus 246 ~~-~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIi 322 (1170)
.+ ......++..+ +++...+. ..-..+++-++|||+++. .+..+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 00 00001112211 22222211 011245677999999975 4567777777765556667666
Q ss_pred EeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 323 TTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 323 TTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
+|.+. .+...... ....|++++|+.++..+++.+.+-... .....+....|++.++|.|--+
T Consensus 155 aTTe~~kLl~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 155 ATTDPQKLPVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred ECCCchhchHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 55544 44333211 227899999999999999987663321 1122345678899999988533
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=2.6e-05 Score=90.25 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=108.5
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC-Cc-eEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-EG-KCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~~l 258 (1170)
|...+.++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+..+. .. .+++. ..+...... ..+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~--~~~ 85 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQGK--KYL 85 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcch--hhh
Confidence 344567999999999999988543 345688999999999999999998764332 22 23332 211000000 000
Q ss_pred HH--HHHHHHhcCc--ccCCCCChhHHHHHH-----hcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 259 HK--QVVSLLLGER--LETGGPNIPAYALER-----LRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 259 ~~--~ll~~l~~~~--~~~~~~~l~~~l~~~-----L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
.. .....+.... .....+.++..+... +...+-+||+||++.. +..+.|...+....+..++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 0000000000 000011111111111 1133458999999754 23444444443344567788777543
Q ss_pred -hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 328 -QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 328 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
.+..... .....+++.+++.++..+++...+-..+.. -..+....++++++|.+-.+.
T Consensus 166 ~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2222221 122678999999999999998876433221 224456778888888765443
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.9e-05 Score=91.15 Aligned_cols=182 Identities=16% Similarity=0.112 Sum_probs=111.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 239 (1170)
|.....+||.+...+.|..++..+. -...+.++|..|+||||+|+.+++.+-.. |...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 4555789999999999999986442 24677999999999999999999875321 1111
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
+.+. .+...++..+ ++++.... ..-..+++-++|+|+|+.. .....|+..+....++
T Consensus 90 iEID-----AAs~~~VddI-Reli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEID-----AASRTKVEDT-RELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEec-----ccccCCHHHH-HHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111 1111112111 11111110 0112345668899999764 4566676666555566
Q ss_pred cEEEEEeCChh-HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 318 SRIVVTTRDKQ-VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 318 srIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.++|++|.+.. +.... ......+++++++.++..+.+.+.+-+.+. ....+....|++.++|.+-.+
T Consensus 149 v~FILaTtd~~kIp~TI-lSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 149 VKFLFATTDPQKLPITV-ISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred cEEEEEECChHhhhHHH-HHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 77887776643 22111 122378999999999999988887643322 122344577889999987433
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=5.2e-05 Score=87.24 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=110.9
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC--Cce-EEE--EechhhhhcCcC
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF--EGK-CFI--ENVREEIENGVG 254 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~-~~~--~~~~~~~~~~~~ 254 (1170)
.|....+++|-+...+.+.+.+..+. -.....++|+.|+||||+|..+++.+-.+= ... +-. ..+. .....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~--~~~~c- 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA--IDPDH- 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc--CCCCC-
Confidence 45566789999999999998886432 244688999999999999999998653210 000 000 0000 00000
Q ss_pred HHHHHHHHHHHH-------h---cCc-----ccCCCCChhHHHHHHh-----cCCCeEEEEeCCCCh--HHHHHHHcccC
Q 046888 255 LVHLHKQVVSLL-------L---GER-----LETGGPNIPAYALERL-----RRTKVFMVLDDVSEF--EQLKYLVGWLD 312 (1170)
Q Consensus 255 ~~~l~~~ll~~l-------~---~~~-----~~~~~~~l~~~l~~~L-----~~kk~LlVLDdv~~~--~~~~~l~~~~~ 312 (1170)
...+.+...- . .+. .....++++ .+.+.+ .+++-++|+|+++.. .....|+..+.
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0000000000 0 000 000111111 111222 245678999999653 44666666665
Q ss_pred CCCCCcEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 313 GFCPGSRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 313 ~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
...++..+|++|.+. .+.... ......+.+.+++.++..+++..... ...+ +....+++.++|.|+....+
T Consensus 167 epp~~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGP---DLPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred cCCCCeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhcc---cCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 544566677777665 333332 22337899999999999999987641 1111 11267899999999865554
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.8e-05 Score=93.15 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=112.5
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc--cCCceEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN--EFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
|...+.++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+.....+.......
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d-- 86 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD-- 86 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc--
Confidence 4455679999999999988886432 2356699999999999999999997642 2333344321100000000000
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHH-----hcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC-hhHH
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALER-----LRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRD-KQVL 330 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~-----L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~ 330 (1170)
+..+... ...+.+.+++ +.+. ..+++-++|+|+++.. +.++.|+..+....+...+|++|.. ..+.
T Consensus 87 ----v~el~~~-~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 87 ----VLEIDAA-SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred ----eEEeccc-ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 0000000 0001111111 1111 2245668899999754 4577777766655555566655543 3332
Q ss_pred HHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 331 RKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 331 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.... .....+++.+++.++..+.+.+.+-..+.. ...+....|++.++|.+--+
T Consensus 161 ~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2221 123689999999999999999887543321 12345678899999988543
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.7e-05 Score=91.89 Aligned_cols=183 Identities=11% Similarity=0.077 Sum_probs=110.4
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-----C------------------
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-----F------------------ 236 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F------------------ 236 (1170)
.|...+++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-.. .
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 34556789999999999999986442 24567899999999999999999876321 0
Q ss_pred ---CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHccc
Q 046888 237 ---EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWL 311 (1170)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~ 311 (1170)
...+.+. .....++..+. +++..+. ..-..++.-++|+|+++.. ...+.|+..+
T Consensus 90 G~hpDviEId-----Aas~~gVDdIR-eLie~~~---------------~~P~~gr~KViIIDEah~Ls~~AaNALLKTL 148 (700)
T PRK12323 90 GRFVDYIEMD-----AASNRGVDEMA-QLLDKAV---------------YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL 148 (700)
T ss_pred CCCCcceEec-----ccccCCHHHHH-HHHHHHH---------------hchhcCCceEEEEEChHhcCHHHHHHHHHhh
Confidence 0011110 00011111111 1111110 0112345668999999754 4577777777
Q ss_pred CCCCCCcEEEEEeC-ChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 312 DGFCPGSRIVVTTR-DKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 312 ~~~~~gsrIIiTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.......++|++|. ...+..... .....+.++.++.++..+.+.+.+-..... ...+..+.|++.++|.|.-.
T Consensus 149 EEPP~~v~FILaTtep~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 149 EEPPEHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred ccCCCCceEEEEeCChHhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 65555666555554 444433321 122689999999999999888776332211 12334577899999998643
No 68
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=3e-06 Score=82.70 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=77.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
-+++.|.|+.|+|||||+++++.+.. .-...+++. ... ... ..... .+ +.+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~----~~~-~~~~~--------------~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDD----PRD-RRLAD--------------PD-LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCC----HHH-HHHhh--------------hh-hHHHHHHhhc
Confidence 36899999999999999999998765 223345553 111 100 00000 00 1222223344
Q ss_pred CCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHh----CCCCcceEeecCCCHhHH
Q 046888 288 RTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ----GVKDEHVYEVERLNEDEG 351 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~~~~~~~~~l~~L~~~ea 351 (1170)
.++.+++||+|.....|...+..+-..++..+|++|+.....+..- -......+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4788999999988877777665554455678999999988665331 111235689999998774
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=2e-05 Score=90.43 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=107.8
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
|..-.+++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++++........++. +. .+...+...+..
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~--~~~~~~~~~~~~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN--ASDERGIDVIRN 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec--cccccchHHHHH
Confidence 344467999999999999998643 3445799999999999999999987643321112221 00 111122221111
Q ss_pred HHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hHHHHhCCCC
Q 046888 261 QVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDK-QVLRKQGVKD 337 (1170)
Q Consensus 261 ~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~ 337 (1170)
.+ ..+.... + .....+-++++|+++.. +..+.|...+....+.+++|+++... .+..... ..
T Consensus 88 ~i-~~~~~~~-~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr 152 (319)
T PRK00440 88 KI-KEFARTA-P------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SR 152 (319)
T ss_pred HH-HHHHhcC-C------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HH
Confidence 11 1111100 0 00123568899998753 33445555555445567777776432 2222111 11
Q ss_pred cceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 338 EHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 338 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
...+++++++.++....+...+-..+.. -..+....+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2578999999999999988877543321 12345677888999987543
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=1.1e-06 Score=99.77 Aligned_cols=91 Identities=18% Similarity=0.328 Sum_probs=58.3
Q ss_pred cccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccC
Q 046888 633 KKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICK 712 (1170)
Q Consensus 633 ~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~ 712 (1170)
..+.+|+.|++++|. +..+|.+ .++|+.|.+.+|..| ..+|..+ .++|++|++++|..+..+|.+
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP~L--P~sLtsL~Lsnc~nL-------tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s--- 113 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLPVL--PNELTEITIENCNNL-------TTLPGSI--PEGLEKLTVCHCPEISGLPES--- 113 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccCCC--CCCCcEEEccCCCCc-------ccCCchh--hhhhhheEccCcccccccccc---
Confidence 345667777777763 4555532 235777777777666 6666544 357888888888777777764
Q ss_pred CCcccEEecC--CCCCchhhhccccEEEccC
Q 046888 713 LKSLIWLCLN--ECLNLESFLESLKKINLGR 741 (1170)
Q Consensus 713 L~~L~~L~l~--~c~~l~~~~~~L~~L~L~~ 741 (1170)
|+.|.++ .|..+..+|++|+.|.+.+
T Consensus 114 ---Le~L~L~~n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 114 ---VRSLEIKGSATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred ---cceEEeCCCCCcccccCcchHhheeccc
Confidence 3444443 3455777788877777644
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=8.1e-08 Score=103.64 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=96.7
Q ss_pred cccccceeecccccccccccc----cccCCCcccEEecCCCCC-------------------chhhhccccEEEccCcCC
Q 046888 688 CLTNLEYLYINRCKRLKRVST----SICKLKSLIWLCLNECLN-------------------LESFLESLKKINLGRTTV 744 (1170)
Q Consensus 688 ~l~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~c~~-------------------l~~~~~~L~~L~L~~~~i 744 (1170)
..++|++|+||+|-....-+. -|.++.+|++|.|.+|-. ....++.|+.+...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 345677777777654333222 234556666666666621 112355688888888877
Q ss_pred cccC-----ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEE
Q 046888 745 TELP-----SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWL 814 (1170)
Q Consensus 745 ~~lp-----~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L 814 (1170)
..-+ ..+...+.|+.+.+..|.+...- . .+-...+..+++|+.|||.+|-++. +...+..+++|+.|
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG--~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG--V-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCch--h-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 7444 34666778888888888764321 1 1112226778888888888887763 44556677788888
Q ss_pred ECcCCCCcc-----ccccc-cCCCCCCEEEecCCCCCC
Q 046888 815 ELRENNFES-----LPVSI-KQLSRLKRLDLSNCSMLQ 846 (1170)
Q Consensus 815 ~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~c~~l~ 846 (1170)
++++|.++. +-..+ ...|+|+.|.|.+|....
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 888887762 11122 346788888888887543
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=4.7e-05 Score=91.32 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=110.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 239 (1170)
|.....+||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 445568999999999999888643 223557899999999999999999865421 1111
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~g 317 (1170)
+.+. .....++..+ ++++..+.. .-..+++-++|+|+++. ....+.|+..+......
T Consensus 91 ieid-----aas~~gvd~i-r~ii~~~~~---------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID-----AASRTGVEET-KEILDNIQY---------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee-----cccccCHHHH-HHHHHHHHh---------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1111 1111222211 122221110 11235667899999975 34567777766655556
Q ss_pred cEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046888 318 SRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVL 390 (1170)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 390 (1170)
.++|++|-+. .+.... ......+++++++.++..+.+...+-..+. ....+....|++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTI-LSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666544443 343222 112378999999999988888775533221 1223445678888888764 44444
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.26 E-value=3.5e-05 Score=93.07 Aligned_cols=181 Identities=14% Similarity=0.162 Sum_probs=108.0
Q ss_pred CCCCCccccchhHHHHHHHHhhcCC--CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGL--PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
|.....++|.+..+++|..++.... ...+.+.|+|++|+||||+|+++++++. |+. +.+. .+..... ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-----asd~r~~-~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-----ASDQRTA-DV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-----ccccccH-HH
Confidence 4455679999999999999986421 2267899999999999999999999763 322 2221 2221111 22
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh------HHHHHHHcccCCCCCCcEEEEEeCChh-HHH
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF------EQLKYLVGWLDGFCPGSRIVVTTRDKQ-VLR 331 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~ 331 (1170)
...++....... .....++-+||+|+++.. ..++.+...+. ..+..||+|+.+.. ...
T Consensus 81 i~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 81 IERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 222222211100 111136779999999764 22455554443 23345666664432 111
Q ss_pred -HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 332 -KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 332 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
... .....+++++++.++....+...+...... -..+....|++.++|..-.+.
T Consensus 146 k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 146 RELR-NACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hhHh-ccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 111 122679999999999999888776443321 123456788888988765444
No 74
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=1e-05 Score=80.75 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=69.8
Q ss_pred ccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHh
Q 046888 188 VGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1170)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++. ..+ ..............
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~----~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASD----LLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhh----hhhhhHHHHHhhhh--
Confidence 47888888888887542 3568999999999999999999998754333344443 211 11111111100000
Q ss_pred cCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HH---HHHHHcccCCC---CCCcEEEEEeCCh
Q 046888 268 GERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQ---LKYLVGWLDGF---CPGSRIVVTTRDK 327 (1170)
Q Consensus 268 ~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~---~~~l~~~~~~~---~~gsrIIiTTR~~ 327 (1170)
............++.++|+||++.. .. +..+....... ..+.+||+||...
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0000111223456789999999853 22 33333332221 3677888888865
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=3.2e-06 Score=82.93 Aligned_cols=113 Identities=21% Similarity=0.334 Sum_probs=74.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc-----CCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCccc-CCCCChhH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE-----FEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLE-TGGPNIPA 280 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~l~~ 280 (1170)
+-+.+.|+|.+|+|||++++.+++..... -...+|+. .........+...++.++...... .....+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34689999999999999999999977543 23445665 444457889999999999877665 23344445
Q ss_pred HHHHHhcCCC-eEEEEeCCCCh---HHHHHHHcccCCCCCCcEEEEEeCC
Q 046888 281 YALERLRRTK-VFMVLDDVSEF---EQLKYLVGWLDGFCPGSRIVVTTRD 326 (1170)
Q Consensus 281 ~l~~~L~~kk-~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIIiTTR~ 326 (1170)
.+.+.+.+.+ .+||+|+++.. +.++.+....+ ..+.+||+..++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5666666555 49999999765 33555544333 566778887765
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=2e-05 Score=81.96 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=97.1
Q ss_pred CCCCCCccccchhHHHHHHHHhhc---CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCT---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLV 256 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 256 (1170)
.|..-++|||-+.-++.+.-++.. ..+...-+.+||++|.||||||..++++....|. +... -. .... .
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~-i~k~---~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PA-IEKA---G 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC---SC---H
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hh-hhhH---H
Confidence 456678999999999988766642 2345678999999999999999999998876653 1210 00 1111 1
Q ss_pred HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccC--------CCCCCc--------
Q 046888 257 HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLD--------GFCPGS-------- 318 (1170)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~--------~~~~gs-------- 318 (1170)
.+.. ++ ..++ ++-+|.+|.+... .+-+.|..... ..++++
T Consensus 91 dl~~-il--------------------~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 91 DLAA-IL--------------------TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHHH-HH--------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHHH-HH--------------------HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1111 11 2233 3446777999653 33333332221 112222
Q ss_pred ---EEEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 319 ---RIVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 319 ---rIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
-|=.|||...+..-+...-..+..++..+.+|-.++..+.+-.-. -+-.++.+.+|++.+.|-|--..-+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 234688875553333222124568999999999999988763322 2234567889999999999654433
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.24 E-value=9.2e-05 Score=84.57 Aligned_cols=183 Identities=13% Similarity=0.190 Sum_probs=106.9
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc-cCCceEEEEechhhhhcCcCHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN-EFEGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
|..-..++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+++.+.. .|...+.-.+ .+...+...+.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGIDVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccHHHHH
Confidence 445567899998888888887543 3455789999999999999999998633 3332211111 12222333222
Q ss_pred HHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hHHHHhCCC
Q 046888 260 KQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDK-QVLRKQGVK 336 (1170)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~ 336 (1170)
. .+......... .-.++.-++|||+++.. .+...|...+......+++|+++... .+......
T Consensus 83 ~-~i~~~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S- 148 (319)
T PLN03025 83 N-KIKMFAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS- 148 (319)
T ss_pred H-HHHHHHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-
Confidence 2 22211110000 00134568999999764 33444544444445667777776443 22221111
Q ss_pred CcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 337 DEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 337 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
....+++++++.++..+.+...+-..+.. -..+....+++.++|..-
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMR 195 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 12579999999999999988877433221 113456778888888753
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=3.4e-06 Score=98.17 Aligned_cols=173 Identities=19% Similarity=0.266 Sum_probs=100.3
Q ss_pred CCCccccchhHHHHHHHHhhcC-----------CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 183 SSKGLVGLSSRIECIKSLLCTG-----------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
....+.|++..++++.+.+... -...+-+.|+|++|+|||++|++++++....|-... .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-----~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-----G----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----h-----
Confidence 3457899999999998876421 123456999999999999999999998765432110 0
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCC-
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGF- 314 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~- 314 (1170)
..+....... ....+...+...-...+.+|+||+++.. ..+..++..+...
T Consensus 190 ----~~l~~~~~g~--------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ----SELVRKYIGE--------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ----HHHHHHhhhH--------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 0111110000 0000111111112345679999998653 1133333333322
Q ss_pred -CCCcEEEEEeCChhHH-----HHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCC-hhHHHHHHHHHHHhCCC
Q 046888 315 -CPGSRIVVTTRDKQVL-----RKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRP-EHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 315 -~~gsrIIiTTR~~~v~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 383 (1170)
..+.+||.||.....+ +....+ ..++++..+.++..++|..++.+..... ..+ ..+++.+.|.
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd--~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~ 327 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFD--RIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGA 327 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCc--eEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCC
Confidence 2456788888754322 111234 6799999999999999999885543322 223 4566666665
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=3e-05 Score=88.38 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=109.7
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc------cCCceEEEEechhhhhcCcCHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN------EFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
+.++|-+..++.+...+..+ .-.....++|+.|+||||+|+.++..+-. +.+...|.. . .....+...+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~---~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I---NKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c---cCCCCCHHHH
Confidence 46789888889999888543 23457789999999999999999987522 233323321 0 0112233332
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCC--CChHHHHHHHcccCCCCCCcEEEEEeCChhH-HHHhCC
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDV--SEFEQLKYLVGWLDGFCPGSRIVVTTRDKQV-LRKQGV 335 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv--~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~~~ 335 (1170)
+++...+... . ..+++=++|+|++ .+.+....|+..+....+++.+|++|.+... +.....
T Consensus 79 -r~~~~~~~~~--------------p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 -RNIIEEVNKK--------------P-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred -HHHHHHHhcC--------------c-ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222222110 1 1233445555665 4556788888888777788888888876532 222211
Q ss_pred CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 336 KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 336 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
....+++.+++.++..+.+.... . ... .+.++.++.+++|.|.-+...
T Consensus 143 -Rc~~~~~~~~~~~~~~~~l~~~~-~--~~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 -RCQIYKLNRLSKEEIEKFISYKY-N--DIK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred -hceeeeCCCcCHHHHHHHHHHHh-c--CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22789999999999988876553 1 111 233567889999998755433
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=0.00012 Score=86.93 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=108.9
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc----CC-----------------c
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE----FE-----------------G 238 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 238 (1170)
.|...+.+||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 34556789999988888888775432 23457899999999999999999865321 00 1
Q ss_pred eEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCC
Q 046888 239 KCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCP 316 (1170)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~ 316 (1170)
...+. .+...+...+. ++...... ....+++-++|+|+++.. ++.+.|+..+....+
T Consensus 88 v~el~-----aa~~~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 88 VIELD-----AASNRGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred cEEEe-----CcccCCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11111 11112222221 22211110 012345678999999754 345666666554434
Q ss_pred CcEEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC-hhHHHHHHH
Q 046888 317 GSRIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN-PLALEVLGS 392 (1170)
Q Consensus 317 gsrIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~lg~ 392 (1170)
...+|++|.+ ..+..... .....+++.+++.++....+...+...+. .-..+....|++.++|. +.|+..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444444433 34433332 22378999999999998888887743221 11234456778777654 666666644
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=6.3e-05 Score=91.11 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=108.2
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC---------------------Cce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---------------------EGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 239 (1170)
|.....+||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-..- ...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 4556789999999999999986432 245789999999999999999988653211 001
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH--HHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE--QLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~--~~~~l~~~~~~~~~g 317 (1170)
+.+. .....++.. .++++..... .-..+++-++|+|+++... ....|+..+......
T Consensus 91 lEid-----aAs~~gVd~-IRelle~a~~---------------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEID-----AASNTGIDN-IREVLENAQY---------------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEe-----ccccCCHHH-HHHHHHHHHh---------------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 1111 011111111 1111111100 0122456688999997643 355566555544456
Q ss_pred cEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 318 SRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.++|++|.+. .+..... .....+.+++++.++..+.+.+.+-+.+. .-..+....|++.++|.+.-+
T Consensus 150 v~fILaTtd~~kL~~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 150 VKFILATTDPHKVPVTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cEEEEEeCCccccchHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHH
Confidence 6777776554 2222111 11256888999999999988877643221 122345678899999988543
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.7e-07 Score=111.25 Aligned_cols=55 Identities=27% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCC
Q 046888 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 788 L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 843 (1170)
|+.+++++|.+..++..+..+..+..|++.+|++..+. .+...+.+..+.+..++
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK 288 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence 55555555555555444555555555555555544333 23333344444444443
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=4.1e-06 Score=104.00 Aligned_cols=105 Identities=30% Similarity=0.418 Sum_probs=87.9
Q ss_pred CCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCCCEEECcCCCCc-cccccccCCCC
Q 046888 756 GLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRENNFE-SLPVSIKQLSR 833 (1170)
Q Consensus 756 ~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 833 (1170)
.++.|+|++|.+.+ .+|.. +..+++|+.|+|++|++.+ +|..++.+++|+.|+|++|+++ .+|..+..+++
T Consensus 419 ~v~~L~L~~n~L~g------~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRG------FIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCccc------cCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47889999999875 56665 8899999999999999985 8999999999999999999998 78999999999
Q ss_pred CCEEEecCCCCCCCCCCCc----cccceeccccccccC
Q 046888 834 LKRLDLSNCSMLQSIPELP----PSLKWLQAGNCKRLQ 867 (1170)
Q Consensus 834 L~~L~L~~c~~l~~lp~l~----~~L~~L~i~~c~~L~ 867 (1170)
|+.|+|++|...+.+|... .++..+++.+++.+-
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999999999888888633 234455555554443
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=0.00022 Score=85.14 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=111.3
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC-------ceEEEEe--------
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE-------GKCFIEN-------- 244 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~-------- 244 (1170)
.|....++||-+..++.|...+..+ .-...+.++|..|+||||+|+.+++.+-..-. ..|..+.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3455568899999999988877543 22457889999999999999999987632110 0111110
Q ss_pred ----chhh-hhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 245 ----VREE-IENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 245 ----~~~~-~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
+.+. .....++..+.. ++.... ..-..+++-++|+|+++.. ..++.|+..+....+.
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 0000 001112222211 111110 0112346678999999863 4577777666655556
Q ss_pred cEEEE-EeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 318 SRIVV-TTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 318 srIIi-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
..+|+ ||+...+...... ....+++++++.++..+.+...+-..+.. ...+....|++.++|.+--
T Consensus 159 ~vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 159 IIFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 66554 5555455443322 22679999999999999999887543321 1233456788899998743
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.4e-05 Score=90.03 Aligned_cols=192 Identities=15% Similarity=0.089 Sum_probs=108.2
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC---ceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE---GKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|...+.+||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-..-. ..|..+. .-..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~---------sC~~ 83 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT---------SCLE 83 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc---------HHHH
Confidence 4556789999999999998886432 1345789999999999999999987543210 0111110 0000
Q ss_pred HHHHHHHHHhcCc--ccCCCCChhH---HHH-HHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEE-EeCChh
Q 046888 258 LHKQVVSLLLGER--LETGGPNIPA---YAL-ERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVV-TTRDKQ 328 (1170)
Q Consensus 258 l~~~ll~~l~~~~--~~~~~~~l~~---~l~-~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi-TTR~~~ 328 (1170)
+.......+..-. ...+.+.+++ .+. ....++.-++|+|+++.. ++.+.|+..+........+|. ||....
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 0000000000000 0001111111 111 112356678999999753 557777776654444555454 444344
Q ss_pred HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 329 VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 329 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
+..... .....|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+-
T Consensus 164 I~~TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 164 IPETIL-SRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ccHHHH-hhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 433321 12267999999999998888877643221 1224456789999999884
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.4e-08 Score=101.63 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=101.2
Q ss_pred cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCC
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERS 765 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~ 765 (1170)
++.+.+|+.|.|.++..-..+...|.+-.+|+.|++++|+.+..+... --+.+++.|..|+|++|
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---------------ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---------------LLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH---------------HHHHhhhhHhhcCchHh
Confidence 566777788888877766666666777888888888888766543211 13567788888888888
Q ss_pred CCCCcCcCCcccCccccCCCCCCCEEeCCCCC--CC--CCCcccCCCCCCCEEECcCCC-Cc-cccccccCCCCCCEEEe
Q 046888 766 QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCA--LT--AIPEEIGCLPSLEWLELRENN-FE-SLPVSIKQLSRLKRLDL 839 (1170)
Q Consensus 766 ~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~--l~--~ip~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L 839 (1170)
.+....- ..+- -.--++|..|+|+||. +. .+..-...+++|..|+|++|. ++ ..-..+.+++.|++|.|
T Consensus 271 ~l~~~~V--tv~V---~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 271 FLFTEKV--TVAV---AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred hccchhh--hHHH---hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7654210 0110 1122468888888873 22 233334567888888888883 33 33345678888888888
Q ss_pred cCCCCCCCCCC------Cccccceecccccc
Q 046888 840 SNCSMLQSIPE------LPPSLKWLQAGNCK 864 (1170)
Q Consensus 840 ~~c~~l~~lp~------l~~~L~~L~i~~c~ 864 (1170)
+.|..+ +|+ -.|+|.+|++.+|-
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 888632 332 12677788877763
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=6.1e-05 Score=87.37 Aligned_cols=178 Identities=11% Similarity=0.108 Sum_probs=107.1
Q ss_pred CccccchhHHHHHHHHhhcCCC--------CeEEEEEEecCCChHHHHHHHHHHHHhccC--------------------
Q 046888 185 KGLVGLSSRIECIKSLLCTGLP--------DVRIVGIWGMGGIGKTTIVKALFNQISNEF-------------------- 236 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------------------- 236 (1170)
++++|-+..++.|.+.+..+.. -...+.++|++|+|||++|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999998875431 246688999999999999999988653221
Q ss_pred CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCC
Q 046888 237 EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGF 314 (1170)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~ 314 (1170)
+...++.. .....++..+ +++...+.. .-..+++-++|+|+++.. .....|+..+...
T Consensus 85 pD~~~i~~----~~~~i~i~~i-R~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAP----EGLSIGVDEV-RELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecc----ccccCCHHHH-HHHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11222210 0011122221 122222110 001234457788999754 3455666666555
Q ss_pred CCCcEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 315 CPGSRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 315 ~~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
.++..+|++|.+. .+...... ....+.+++++.++..+.+.... . .. .+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~---~-~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRD---G-VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhc---C-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5667666666654 44433321 23789999999999998887432 1 11 344677899999999755443
No 88
>PRK08727 hypothetical protein; Validated
Probab=98.13 E-value=0.00014 Score=78.86 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=95.6
Q ss_pred CCccccchh-HHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHH
Q 046888 184 SKGLVGLSS-RIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQV 262 (1170)
Q Consensus 184 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1170)
.++|++-.. .+..+..+.. + .....+.|+|.+|+|||.||+++++....+...+.|+. ..+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-----~~~------~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-----LQA------AAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-----HHH------hhhhH
Confidence 355665543 3343443332 2 22346999999999999999999998776655566764 211 11111
Q ss_pred HHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----HHHHHHHcccCC-CCCCcEEEEEeCChh---------
Q 046888 263 VSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----EQLKYLVGWLDG-FCPGSRIVVTTRDKQ--------- 328 (1170)
Q Consensus 263 l~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~~~--------- 328 (1170)
.. ..+.+. +.-+||+||++.. ..-+.+...+.. ...|..||+|++...
T Consensus 85 ~~-----------------~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 RD-----------------ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred HH-----------------HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 10 002222 3358999999642 212233322221 234667999998531
Q ss_pred HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 329 VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 329 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
+...+.. ...+++++++.++..+++.+++....- .-.++...-+++.+.|-.-+
T Consensus 147 L~SRl~~--~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 147 LRSRLAQ--CIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHhc--CceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHH
Confidence 1122212 268999999999999999988754221 12233445666666655433
No 89
>PTZ00202 tuzin; Provisional
Probab=98.11 E-value=0.00032 Score=79.44 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=109.8
Q ss_pred HHHHHHhhhhhccc----ccCCCCCCCccccchhHHHHHHHHhhcCC-CCeEEEEEEecCCChHHHHHHHHHHHHhccCC
Q 046888 163 VEVIVKDILKKLEC----TSMSSDSSKGLVGLSSRIECIKSLLCTGL-PDVRIVGIWGMGGIGKTTIVKALFNQISNEFE 237 (1170)
Q Consensus 163 i~~iv~~i~~~l~~----~~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1170)
..-.|+...+.++. .+..|.....|+||+.++.+|...|...+ +..++++|.|++|+|||||++.+.....
T Consensus 236 l~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~---- 311 (550)
T PTZ00202 236 LKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG---- 311 (550)
T ss_pred HHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----
Confidence 33445555555421 11346678899999999999999996433 3457999999999999999999987553
Q ss_pred ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC---CCCChhHHHHHHh-c-CCCeEEEEeCC--CChHH-HHHHHc
Q 046888 238 GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET---GGPNIPAYALERL-R-RTKVFMVLDDV--SEFEQ-LKYLVG 309 (1170)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~l~~~l~~~L-~-~kk~LlVLDdv--~~~~~-~~~l~~ 309 (1170)
...++.|. .+...++..++.+++...... -...+.+.+.+.- . +++.+||+-== ++... ..+..
T Consensus 312 ~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v- 383 (550)
T PTZ00202 312 MPAVFVDV-------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV- 383 (550)
T ss_pred ceEEEECC-------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-
Confidence 22454432 266899999999998633222 1122333333221 2 56677766422 22211 11111
Q ss_pred ccCCCCCCcEEEEEeCChhHHH-HhCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 310 WLDGFCPGSRIVVTTRDKQVLR-KQGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 310 ~~~~~~~gsrIIiTTR~~~v~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
.+.....-++|++----+.+.. ....+.-..|-++.++.++|.++-.+..
T Consensus 384 ~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 384 ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1112234567776543332211 1112223579999999999998865543
No 90
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0015 Score=75.13 Aligned_cols=287 Identities=14% Similarity=0.154 Sum_probs=164.3
Q ss_pred CCCCCCccccchhHHHHHHHHhhcC--CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCc--eEEEEechhhhhcCcCH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTG--LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEG--KCFIENVREEIENGVGL 255 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~ 255 (1170)
+...++.+.+|+.+++++...|..- .....-+.|+|.+|.|||+.++.+++++...... .+++. +....+.
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-----c~~~~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-----CLELRTP 86 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-----eeeCCCH
Confidence 3445666999999999999887631 1222338999999999999999999988766443 46665 4446777
Q ss_pred HHHHHHHHHHHhcCccc-CCCCChhHHHHHHhc--CCCeEEEEeCCCChHHH--HHHHcccCCCCC-CcEE--EEEeCCh
Q 046888 256 VHLHKQVVSLLLGERLE-TGGPNIPAYALERLR--RTKVFMVLDDVSEFEQL--KYLVGWLDGFCP-GSRI--VVTTRDK 327 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~-~~~~~l~~~l~~~L~--~kk~LlVLDdv~~~~~~--~~l~~~~~~~~~-gsrI--IiTTR~~ 327 (1170)
.++..+++.++...... .....+...+.+.+. ++.+++|||+++....- +.|-..+.+... .++| |..+-+.
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 88888898888622221 133334444555554 57899999999653221 222222222222 3443 3344444
Q ss_pred hHHHHhCC-----CCcceEeecCCCHhHHHHHHHHHH---hccCCCChhHHHHHHHHHHHhCC-ChhHHHHHHHH--hcC
Q 046888 328 QVLRKQGV-----KDEHVYEVERLNEDEGLELFYKYA---FRQNHRPEHLTVLSKKAVRYAEG-NPLALEVLGSS--LQQ 396 (1170)
Q Consensus 328 ~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~G-lPLAl~~lg~~--L~~ 396 (1170)
........ -....+..++-+.+|-..++..++ |......++.-+++..++..-+| .=.|+..+-.. ++.
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 33222210 011347788889999999988876 44444555555555556666665 33455544332 221
Q ss_pred ------CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCCCCHH----HHHHHHhhCCC---CH
Q 046888 397 ------KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKGEGKD----RVLMLLHDRQY---NV 463 (1170)
Q Consensus 397 ------~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~----~l~~l~~~~~~---~~ 463 (1170)
.+.+.-..+.+.. -.....-....|+.++|..++.++..-.+.... ....+....+. ..
T Consensus 247 ~~~~~~v~~~~v~~a~~~~--------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI--------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh--------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1222222221111 122333347788999888877666553333322 23333333333 22
Q ss_pred HHHHHHHHhcCCcEEe
Q 046888 464 TQALSVLIDKSLIIEH 479 (1170)
Q Consensus 464 ~~~l~~L~~~sLi~~~ 479 (1170)
...+..|...++|...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 3557777778887755
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=1.7e-06 Score=72.14 Aligned_cols=58 Identities=43% Similarity=0.630 Sum_probs=43.8
Q ss_pred CCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc-ccccCCCCCCEEEecCCC
Q 046888 786 FSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLP-VSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~ 843 (1170)
++|+.|++++|+++.+| ..+..+++|+.|+|++|+++.+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35777777777777766 46677888888888888887775 456788888888888875
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=4.4e-05 Score=82.81 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=96.7
Q ss_pred CCCccc-cchhH-HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 183 SSKGLV-GLSSR-IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 183 ~~~~~v-Gr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
..++|+ |.+.. +..+.++.. +....+.+.|+|.+|+|||+||+++++.....-....++. ... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-----~~~------~~~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-----AAS------PLL 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-----hHH------hHH
Confidence 345555 54443 344455443 2234567899999999999999999997644333444554 111 000
Q ss_pred HHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCC-CCCc-EEEEEeCChhHHHHh---
Q 046888 261 QVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGF-CPGS-RIVVTTRDKQVLRKQ--- 333 (1170)
Q Consensus 261 ~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~-~~gs-rIIiTTR~~~v~~~~--- 333 (1170)
.+ ... ...-+||+||++.. .+.+.+...+... ..+. .||+|++........
T Consensus 84 ~~---------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 011 12346888999643 2333333333221 2344 366666643211100
Q ss_pred ---CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 046888 334 ---GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSL 394 (1170)
Q Consensus 334 ---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 394 (1170)
.......++++++++++-..++...+-.... .-.++..+.+++...|++..+..+-..|
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 0111268899999999877777665422221 1223456677778889988877665544
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.09 E-value=0.0001 Score=85.98 Aligned_cols=185 Identities=13% Similarity=0.120 Sum_probs=112.4
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc----CC-----------------ce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE----FE-----------------GK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 239 (1170)
|.....++|.+..++.+.+.+..+. -...+.++|.+|+||||+|+.++..+... +. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4455678999999999999886432 24567899999999999999999876421 11 01
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
.++. .....+.. ..+++...+.. .-..+++-++|+|+++.. .....++..+....+.
T Consensus 89 ~~~~-----~~~~~~~~-~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEID-----AASNNGVD-DIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEee-----ccccCCHH-HHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 1111 00011111 11222222211 011234558889998654 4466666666555566
Q ss_pred cEEEEEeCChh-HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 318 SRIVVTTRDKQ-VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 318 srIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
..+|++|.+.. +...... ....++.++++.++..+++...+-..+.. -..+.+..+++.++|.|..+...
T Consensus 148 ~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 148 VVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 67777765543 3332211 12678999999999999998877443321 12356677889999998765544
No 94
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.08 E-value=5.7e-06 Score=86.52 Aligned_cols=50 Identities=28% Similarity=0.449 Sum_probs=35.8
Q ss_pred ccccchhHHHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 186 GLVGLSSRIECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.||||+++++++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 234557999999999999999999999988776
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=6.6e-05 Score=91.43 Aligned_cols=183 Identities=14% Similarity=0.098 Sum_probs=110.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC---------------------Cce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---------------------EGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 239 (1170)
|.....+||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-... ...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 4556789999999999998886432 234578999999999999999998653321 011
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
..+. .....++..+ +++...+. ..-..+++-++|+|+++.. ...+.|+..+......
T Consensus 91 ieid-----aas~~~Vddi-R~li~~~~---------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 91 IEID-----AASRTKVEDT-RELLDNVQ---------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred eeec-----ccccCCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 1111 0001111111 12221111 0112456678999999753 4577777666655556
Q ss_pred cEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 318 SRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
.++|.+|.+. .+...... ....|.+++++.++..+.+.+.+-..+.. ...+....|++.++|.+--+.
T Consensus 150 v~FIL~Tt~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred eEEEEecCCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 6665555444 44333211 23789999999999999988766322211 123445678999999876333
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=4e-05 Score=95.28 Aligned_cols=173 Identities=17% Similarity=0.297 Sum_probs=100.2
Q ss_pred CCCCCccccchhHHH---HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIE---CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|...+.++|.+..+. .+.+.+.. +....+.++|++|+||||||+.+++.....|. .+. .. ..++..
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-----a~-~~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-----AV-LAGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-----hh-hhhhHH
Confidence 344567899988774 45666643 34567889999999999999999987765542 121 00 011111
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHH--hcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEE--eCChh--H
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALER--LRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVT--TRDKQ--V 329 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~--L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiT--TR~~~--v 329 (1170)
+ ++.+... .+. ..+++.++||||++. ..+.+.|+..+. .|+.++|+ |.+.. +
T Consensus 93 i-r~~i~~a----------------~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 L-RAEVDRA----------------KERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred H-HHHHHHH----------------HHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 1 1111111 011 124577999999964 455566664433 45555553 34331 2
Q ss_pred HHHhCCCCcceEeecCCCHhHHHHHHHHHHhcc-----CCCChhHHHHHHHHHHHhCCChh
Q 046888 330 LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQ-----NHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
..... .....+.+++|+.++...++.+.+-.. .....-.++....+++++.|.--
T Consensus 153 ~~aL~-SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 153 NKALV-SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhHhh-ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11111 112679999999999999988766310 11112234455778888888743
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.06 E-value=0.0001 Score=77.34 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=95.2
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCceEEEEechhhhhcCcC
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGKCFIENVREEIENGVG 254 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~ 254 (1170)
.+.+.+..+ .-...+.++|..|+||||+|+.+...+-.. ++...++.. .....+
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~----~~~~~~ 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP----EGQSIK 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc----ccCcCC
Confidence 344455322 123678899999999999999999876431 111222211 011112
Q ss_pred HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hHHH
Q 046888 255 LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDK-QVLR 331 (1170)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~ 331 (1170)
...+ +++...+.. .-..+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+..
T Consensus 78 ~~~i-~~i~~~~~~---------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 VDQV-RELVEFLSR---------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHH-HHHHHHHcc---------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 2111 112222110 011245668899999753 44667776666655667777777654 3323
Q ss_pred HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 332 KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 332 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
... .....+++.+++.++..+.+.+. + .. .+.+..+++.++|.|..
T Consensus 142 ~i~-sr~~~~~~~~~~~~~~~~~l~~~--g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIR-SRCQVLPFPPLSEEALLQWLIRQ--G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHH-hhcEEeeCCCCCHHHHHHHHHHc--C---CC---HHHHHHHHHHcCCCccc
Confidence 221 12368999999999998888776 1 11 34577899999998853
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00016 Score=82.80 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=113.8
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc----CCceEEEEechhhhhcCcCH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE----FEGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~~ 255 (1170)
.|.....++|-+...+.+...+..+. -...+.|+|..|+||||+|+.+++.+-.. +..... ....+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--------~~~~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--------ADPDPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--------CCCCCC
Confidence 55667789999999999999886442 24568899999999999999999876431 111000 000000
Q ss_pred HHHHHHHHHH-------HhcC---cc-----cCCCCChhHHHHHHh-----cCCCeEEEEeCCCCh--HHHHHHHcccCC
Q 046888 256 VHLHKQVVSL-------LLGE---RL-----ETGGPNIPAYALERL-----RRTKVFMVLDDVSEF--EQLKYLVGWLDG 313 (1170)
Q Consensus 256 ~~l~~~ll~~-------l~~~---~~-----~~~~~~l~~~l~~~L-----~~kk~LlVLDdv~~~--~~~~~l~~~~~~ 313 (1170)
....+.+... +... +. ....+.++ .+.+.+ .+++-++|+|+++.. ...+.|+..+..
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 1111111110 0000 00 00111221 122222 245668999999753 445666666554
Q ss_pred CCCCcE-EEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 314 FCPGSR-IVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 314 ~~~gsr-IIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
...... |++|++...++..... ....+.+.+++.++..+++....... . ...+....+++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444555 4455554444433322 23689999999999999998743211 1 11344678899999999865544
No 99
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=9.2e-05 Score=88.89 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=107.9
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC--C-------------------c
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF--E-------------------G 238 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~ 238 (1170)
.|.....++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- . .
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 34556789999999999998885432 246788999999999999999998763210 0 0
Q ss_pred eEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCC
Q 046888 239 KCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCP 316 (1170)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~ 316 (1170)
..++. .....++..+ +.+...+.. .-...++=++|+|+++. ......|+..+....+
T Consensus 90 iieId-----aas~igVd~I-ReIi~~~~~---------------~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~ 148 (605)
T PRK05896 90 IVELD-----AASNNGVDEI-RNIIDNINY---------------LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPK 148 (605)
T ss_pred eEEec-----cccccCHHHH-HHHHHHHHh---------------chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCC
Confidence 01110 0001111111 111111110 00112333599999975 3456666665554445
Q ss_pred CcEEEEEe-CChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHHH
Q 046888 317 GSRIVVTT-RDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVLG 391 (1170)
Q Consensus 317 gsrIIiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg 391 (1170)
...+|++| ....+..... .....+++.+++.++....+...+-..+. .-..+.+..+++.++|.+- |+..+-
T Consensus 149 ~tvfIL~Tt~~~KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 149 HVVFIFATTEFQKIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred cEEEEEECCChHhhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55655544 4334433221 11268999999999999888877643221 1123346678888998664 444443
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.04 E-value=2.3e-05 Score=84.94 Aligned_cols=153 Identities=16% Similarity=0.273 Sum_probs=93.1
Q ss_pred CCCCCccccchhHHHH---HHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIEC---IKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|...++.||.+..+.+ |.+++ +.+....+.+||++|.||||||+.+...-+.+ ...|+. .+....-..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~--Syrfve-----lSAt~a~t~ 204 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVE-----LSATNAKTN 204 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEE-----EeccccchH
Confidence 3444556666554433 34444 34567788999999999999999999865443 245555 333322223
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEE--EeCChhHH-HH
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVV--TTRDKQVL-RK 332 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIi--TTR~~~v~-~~ 332 (1170)
-.+.++.+.... ..+.++|.+|.+|.|.. ..|-+.++.. ...|.-++| ||.++... ..
T Consensus 205 dvR~ife~aq~~--------------~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 205 DVRDIFEQAQNE--------------KSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHHHHHHHHH--------------HhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhH
Confidence 333344332211 34677899999999954 3444555433 346776665 67666321 11
Q ss_pred hCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 333 QGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 333 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
.-.....++.+++|+.++...++.+..
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHHH
Confidence 112223789999999999998888743
No 101
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=1.5e-06 Score=103.17 Aligned_cols=217 Identities=22% Similarity=0.251 Sum_probs=107.2
Q ss_pred CeeEEEecCCCCCCCCC-CCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPS-NFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
+|..|++.+|.++.+.. .-.+.+|++|++++|.|..+ .++..+..|+.|++++|. +..++.+..+++|+.+++.+
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~-- 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSY-- 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCc--
Confidence 66777777777776666 33566777777777777666 345556667777777766 33444444444444444443
Q ss_pred ccccCCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc
Q 046888 671 HLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS 749 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~ 749 (1170)
|.+..+... +..+.+|+.+.+.+|.....- .+..+..+..+ ++..|.+..+-.
T Consensus 172 ------n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~------------------~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 172 ------NRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLL------------------SLLDNKISKLEG 225 (414)
T ss_pred ------chhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHh------------------hcccccceeccC
Confidence 333444332 355566666666665422211 11112222222 333333332211
Q ss_pred cccCCC--CCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc----c
Q 046888 750 SFENIE--GLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFE----S 823 (1170)
Q Consensus 750 ~l~~l~--~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~----~ 823 (1170)
+..+. +|+.+++.+|.+.. .+. .+..+..+..|++.++.+..+. .+...+.+..+.+..|.+. .
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~-------~~~-~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISR-------SPE-GLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred -cccchhHHHHHHhcccCcccc-------ccc-cccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhh
Confidence 11111 25555555555432 111 1445555666666666555432 1233444555555555443 1
Q ss_pred cccc-ccCCCCCCEEEecCCCCCCCC
Q 046888 824 LPVS-IKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 824 lp~~-l~~l~~L~~L~L~~c~~l~~l 848 (1170)
.... ....+.++.+.+.+++.-...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hccccccccccccccccccCcccccc
Confidence 1111 455667777777777654433
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00019 Score=84.31 Aligned_cols=199 Identities=12% Similarity=0.087 Sum_probs=108.9
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc--CCceEEEEechhhhhcCcCHHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE--FEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
.|.....++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... +...-|..+.. ...+.-.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~----~~c~~c~ 85 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT----EPCGECE 85 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC----CCCCCCH
Confidence 34556789999999999998886432 23457899999999999999999876431 10000000000 0000000
Q ss_pred HHHHHHHHHhc-----Cc-ccCCCCChhHHHHHHh-----cCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEe
Q 046888 258 LHKQVVSLLLG-----ER-LETGGPNIPAYALERL-----RRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTT 324 (1170)
Q Consensus 258 l~~~ll~~l~~-----~~-~~~~~~~l~~~l~~~L-----~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT 324 (1170)
..+.+...... +. ...+.+.+++ +.+.+ .+++-++|+|+++.. +.++.++..+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 00000000000 00 0001111111 11222 245567899999753 45677776666555666766555
Q ss_pred -CChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 325 -RDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 325 -R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
+...+..... .....+++++++.++..+.+...+-..+ ..-..+.+..+++.++|.+--+
T Consensus 165 ~~~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 165 TELHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CChHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 4444433221 1125789999999999888877663221 1123455678899999987533
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00015 Score=85.80 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=111.1
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc---------------------cCCce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN---------------------EFEGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~F~~~ 239 (1170)
|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-. .+..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4455789999999999988886432 2357889999999999999999875421 11122
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
+.+. .+...++..+. +++..... .-..+++-++|+|+++.. +..+.|+..+....+.
T Consensus 88 ~eid-----aas~~~vddIR-~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEID-----AASNTSVDDIK-VILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEe-----cccCCCHHHHH-HHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 2222 11122333322 22222110 001245567999999653 4467777766665567
Q ss_pred cEEEEEeC-ChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 318 SRIVVTTR-DKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 318 srIIiTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
.++|++|. .+.+..... .....+++++++.++..+.+.+.+...+. .-..+....|++.++|.+-.
T Consensus 147 v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 147 VKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred eEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 77666554 334433321 12278999999999999998887744322 11234456788899888753
No 104
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00048 Score=83.92 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=107.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-------------------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE------------------------- 235 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------------- 235 (1170)
|...+++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-..
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 4556789998888888999886442 24567899999999999999998865311
Q ss_pred -CCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccC
Q 046888 236 -FEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLD 312 (1170)
Q Consensus 236 -F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~ 312 (1170)
+.....+. .....++..+ ++++..... .-..++.-++|||+|+.. ...+.|+..+.
T Consensus 91 ~h~D~~eld-----aas~~~Vd~i-Reli~~~~~---------------~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE 149 (618)
T PRK14951 91 RFVDYTELD-----AASNRGVDEV-QQLLEQAVY---------------KPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE 149 (618)
T ss_pred CCCceeecC-----cccccCHHHH-HHHHHHHHh---------------CcccCCceEEEEEChhhCCHHHHHHHHHhcc
Confidence 00111110 0011111111 111111100 001234557899999753 45677776665
Q ss_pred CCCCCcEEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 313 GFCPGSRIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 313 ~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
......++|++|.+ ..+..... .....++++.++.++..+.+.+.+-..+.. ...+....|++.++|.+--+
T Consensus 150 EPP~~~~fIL~Ttd~~kil~TIl-SRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 150 EPPEYLKFVLATTDPQKVPVTVL-SRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred cCCCCeEEEEEECCchhhhHHHH-HhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 54455566655544 33332221 123789999999999999988776433221 12345577888898877443
No 105
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.98 E-value=5.6e-07 Score=99.26 Aligned_cols=217 Identities=22% Similarity=0.221 Sum_probs=111.3
Q ss_pred CCCcCccccCCC-CCcccc--cccccccccceeecCCCCCCCcc---CCCCCCCCccccccccCCcccccC---------
Q 046888 611 KPKNLIELNLPF-SKVVQI--WEGKKKAFKLKSINLSHSQYLIR---IPDPSEAPNLERINLWNCTHLNLC--------- 675 (1170)
Q Consensus 611 ~~~~L~~L~L~~-~~i~~l--~~~~~~l~~L~~L~Ls~~~~l~~---~p~~~~l~~L~~L~L~~c~~L~l~--------- 675 (1170)
.+.+|++|+|.. ..++.. -.-...+++|++|+++.|.-... -+-..++.+|+.+.+.||..+.+.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 456677777666 344421 11235577778888877764433 112455666777777777554210
Q ss_pred ---------C-Ccccccc--cccccccccceeeccccccccccc--ccccCCCcccEEecCCCCCchhhhccccEEEccC
Q 046888 676 ---------D-TAIEEVP--SSVECLTNLEYLYINRCKRLKRVS--TSICKLKSLIWLCLNECLNLESFLESLKKINLGR 741 (1170)
Q Consensus 676 ---------~-n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~ 741 (1170)
+ +.++... ..-..+..|+.|+.++|...+..+ .-..+..+|+.|-+++|..+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----------- 336 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----------- 336 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-----------
Confidence 0 0001100 000223445555555554432221 11123445555555555433221
Q ss_pred cCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCC-CCC-----CCcccCCCCCCCEEE
Q 046888 742 TTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCA-LTA-----IPEEIGCLPSLEWLE 815 (1170)
Q Consensus 742 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~-l~~-----ip~~l~~l~~L~~L~ 815 (1170)
.++. --.+.+.|+.|++..|...... .+-. .-.+++.|+.|.|+.|. +++ +...-..+..|+.|.
T Consensus 337 -~ft~---l~rn~~~Le~l~~e~~~~~~d~----tL~s-ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 337 -GFTM---LGRNCPHLERLDLEECGLITDG----TLAS-LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred -hhhh---hhcCChhhhhhcccccceehhh----hHhh-hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 1111 1235667777777777653321 1111 13467778888888774 333 123334567788888
Q ss_pred CcCCCCc--cccccccCCCCCCEEEecCCCCCCC
Q 046888 816 LRENNFE--SLPVSIKQLSRLKRLDLSNCSMLQS 847 (1170)
Q Consensus 816 L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~ 847 (1170)
|+++... ..-..+..+++|+.++|-+|.....
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 8888554 2334566778888888888876544
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00027 Score=85.00 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=108.8
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 239 (1170)
|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4556789999999999999986432 23457899999999999999999865321 1112
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~g 317 (1170)
..+. .....++..+ ++++..+.. .-..++.-++|+|+|+. .+....|+..+....+.
T Consensus 91 ~eid-----aas~~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVD-----AASRTKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEc-----ccccCCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 2221 1112223322 222222111 01124555788999975 34566677666555566
Q ss_pred cEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 318 SRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.++|++|.+. .+..... .....+++++++.++..+.+...+-..+..- ..+....|++.++|.+.-+
T Consensus 150 ~~fIlattd~~kl~~tI~-SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVL-SRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHH-HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 7777665544 3322211 1126789999999988877766653322211 2234567888889987543
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.98 E-value=4.1e-05 Score=89.54 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=97.4
Q ss_pred CCCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 183 SSKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
..+.+.|++..++++.+.+.. +-...+-|.++|++|.|||++|++++++....|- .+. ..+
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~~---- 200 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GSE---- 200 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hHH----
Confidence 335788999999999887632 1133567899999999999999999997654321 111 111
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HH---HHHHHcccCCC-
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQ---LKYLVGWLDGF- 314 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~---~~~l~~~~~~~- 314 (1170)
+.. ...+. ....+...+...-...+.+|+||+++.. +. +..++..++..
T Consensus 201 ------l~~----~~~g~----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 201 ------LVQ----KFIGE----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ------HhH----hhccc----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 100 00000 0001111111112345788999999653 11 22233223322
Q ss_pred -CCCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhccCCCC-hhHHHHHHHHHHHhCCC
Q 046888 315 -CPGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRP-EHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 315 -~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 383 (1170)
..+.+||.||.....+... ..+ ..++++..+.++..++|..+..+..... ..+ ..+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd--~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFD--RIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCc--eEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 2345677777654332211 233 6799999999999999998874433222 223 3455555554
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00024 Score=85.80 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=112.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC---------------------Cce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---------------------EGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 239 (1170)
|...++++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-... ...
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 445567899888888888888543 2246788999999999999999998763211 001
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
.++. .....++..+. .+...+.. .-..+++-++|+|+++.. +....|+..+......
T Consensus 91 ~eId-----~a~~~~Id~iR-~L~~~~~~---------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 91 VEID-----GASNRGIDDAK-RLKEAIGY---------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred EEEe-----cccccCHHHHH-HHHHHHHh---------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 1111 00111122111 11111100 112345678999999754 4466676666544445
Q ss_pred cEEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh-hHHHHHHHHh
Q 046888 318 SRIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP-LALEVLGSSL 394 (1170)
Q Consensus 318 srIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~lg~~L 394 (1170)
..+|++|.+ ..+..... .....+++++++.++..+.+...+..... .-..+.+..|++.++|.+ .|+..+...+
T Consensus 150 ~ifILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566665554 34433221 12267899999999999988887644322 112345677888899865 6777765544
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.98 E-value=0.00021 Score=77.59 Aligned_cols=169 Identities=12% Similarity=0.244 Sum_probs=93.7
Q ss_pred Cccc-cchh-HHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHH
Q 046888 185 KGLV-GLSS-RIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQV 262 (1170)
Q Consensus 185 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1170)
++|+ |-.. .+..+.++... ...+.+.|+|++|+|||+||+++++....+-..+.|+. ..... ....++
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-----~~~~~---~~~~~~ 91 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-----LDKRA---WFVPEV 91 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-----HHHHh---hhhHHH
Confidence 3444 6322 33444444432 23467899999999999999999998765544455654 21100 000011
Q ss_pred HHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh---HHHHH-HHcccCC-CCCC-cEEEEEeCChh--------
Q 046888 263 VSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF---EQLKY-LVGWLDG-FCPG-SRIVVTTRDKQ-------- 328 (1170)
Q Consensus 263 l~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~---~~~~~-l~~~~~~-~~~g-srIIiTTR~~~-------- 328 (1170)
. +.+.+ --+|++||++.. .+|+. +...+.. ...| .++|+||+...
T Consensus 92 ----------------~----~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 92 ----------------L----EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred ----------------H----HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 1 12211 237889999653 22322 2222221 1133 37999987541
Q ss_pred -HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 329 -VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 329 -v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
+...+... .+++++++++++-.+++.+++.... -.-.++...-+++.+.|..-++.
T Consensus 151 ~L~SRl~~g--~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 151 DLASRLDWG--QIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHhCC--ceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHH
Confidence 22222222 6899999999999999887664322 11223455566777766654443
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00052 Score=83.15 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC---------------------Cce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---------------------EGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 239 (1170)
|.....+||-+..++.+..++..+. -...+.++|..|+||||+|+.++..+-... ...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3455689999999999998886432 235568999999999999999998763211 111
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
+.+. .....++..+ ++++..... .-..+++-++|+|+++.. +....|+..+......
T Consensus 91 ~ei~-----~~~~~~vd~i-r~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD-----AASNTQVDAM-RELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee-----ccccCCHHHH-HHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1111 0101111111 122221110 011345668999999854 3466677666655556
Q ss_pred cEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046888 318 SRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVL 390 (1170)
Q Consensus 318 srIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 390 (1170)
..+|++|.+. .+.... ......+++++++.++..+.+.+.+-..+.. ...+....+++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666655443 222111 0112678999999999998887766332211 123445778889999875 44433
No 111
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00061 Score=80.96 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=97.3
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC--CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF--EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
.-+.|+|..|.|||.|++++++.+.... ..++++. ...+...+...+.... ..+ ..+.+.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~-----~~~-~~~~~~~ 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH-----KEI-EQFKNEI 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh-----hHH-HHHHHHh
Confidence 4588999999999999999999775433 2334443 1234444444433210 111 1222334
Q ss_pred cCCCeEEEEeCCCCh----HHHHHHHcccCC-CCCCcEEEEEeCCh-hHH--------HHhCCCCcceEeecCCCHhHHH
Q 046888 287 RRTKVFMVLDDVSEF----EQLKYLVGWLDG-FCPGSRIVVTTRDK-QVL--------RKQGVKDEHVYEVERLNEDEGL 352 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~~-~v~--------~~~~~~~~~~~~l~~L~~~ea~ 352 (1170)
+ ..-+||+||+... ...+.+...++. ...|..||+|+... ... ..+. .+-++++++++.++..
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~--~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN--MGLSIAIQKLDNKTAT 281 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh--CCceeccCCcCHHHHH
Confidence 4 3457889999542 223344333322 23455788886533 222 1222 2267899999999999
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046888 353 ELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLG 391 (1170)
Q Consensus 353 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 391 (1170)
+++.+++-.......-.++...-|++.++|.|-.+.-+.
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 999998843221112335677889999999997776554
No 112
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=0.00023 Score=76.58 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=82.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
.+.+.|+|.+|+|||+|++.++.... ..|+. .. .+...+.. .+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-----~~------~~~~~~~~--------------------~~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-----PN------EIGSDAAN--------------------AAA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-----HH------HcchHHHH--------------------hhh
Confidence 46789999999999999999887532 23443 10 11111111 111
Q ss_pred CCCeEEEEeCCCC----hHHHHHHHcccCCCCCCcEEEEEeCCh---------hHHHHhCCCCcceEeecCCCHhHHHHH
Q 046888 288 RTKVFMVLDDVSE----FEQLKYLVGWLDGFCPGSRIVVTTRDK---------QVLRKQGVKDEHVYEVERLNEDEGLEL 354 (1170)
Q Consensus 288 ~kk~LlVLDdv~~----~~~~~~l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~L 354 (1170)
+ -+|++||++. .+.+-.+..... ..|..||+|++.. .+...+... .++++++++.++-.++
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHH
Confidence 1 2788899954 233333332222 3467799988742 222233333 7899999999999999
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046888 355 FYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEV 389 (1170)
Q Consensus 355 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 389 (1170)
+.+.+-... -.-.+++..-|++.+.|..-++..
T Consensus 162 L~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 998874321 112244556667777766655543
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00041 Score=87.55 Aligned_cols=180 Identities=11% Similarity=0.085 Sum_probs=107.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC-----------------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE----------------------- 237 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----------------------- 237 (1170)
|.....+||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-....
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 4455689999999999999986432 2356789999999999999999987632100
Q ss_pred ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCC
Q 046888 238 GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFC 315 (1170)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~ 315 (1170)
...++. .....++..+. ++...+. ..-..+++-++|||+++.. ...+.|+..+....
T Consensus 90 dv~eid-----aas~~~Vd~iR-~l~~~~~---------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEID-----AASHGGVDDAR-ELRERAF---------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEec-----ccccCCHHHHH-HHHHHHH---------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 011110 00111222221 1111110 0112345557889999754 44667776666555
Q ss_pred CCcEEEEEeC-ChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 316 PGSRIVVTTR-DKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 316 ~gsrIIiTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
..+.+|++|. ...+...... ....|++..++.++..+++.+.+-..+.. ...+....|++.++|.+.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6666665554 3344443321 23789999999999988887765332211 123345678899999874
No 114
>PRK05642 DNA replication initiation factor; Validated
Probab=97.92 E-value=0.00048 Score=74.74 Aligned_cols=149 Identities=15% Similarity=0.256 Sum_probs=87.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
...+.|+|..|+|||.||+++++.+..+-..++|+. .. .+.... ..+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----~~------~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----LA------ELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----HH------HHHhhh-----------------HHHHHhhh
Confidence 367899999999999999999998765545566765 11 111100 11123343
Q ss_pred CCCeEEEEeCCCCh---HHH-HHHHcccCC-CCCCcEEEEEeCChhH-H--------HHhCCCCcceEeecCCCHhHHHH
Q 046888 288 RTKVFMVLDDVSEF---EQL-KYLVGWLDG-FCPGSRIVVTTRDKQV-L--------RKQGVKDEHVYEVERLNEDEGLE 353 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIIiTTR~~~v-~--------~~~~~~~~~~~~l~~L~~~ea~~ 353 (1170)
+-. ++|+||+... .++ +.+...++. ...|.+||+|++...- . ..+. ...++++++++.++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~--~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLT--LALVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHh--cCeeeecCCCCHHHHHH
Confidence 333 6788999532 233 223333322 2346788998875321 1 1111 12678999999999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046888 354 LFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEV 389 (1170)
Q Consensus 354 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 389 (1170)
++..++....- .-.++...-+++.+.|..-++..
T Consensus 174 il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 174 ALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHH
Confidence 99877644321 11134556666666666544433
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=0.00019 Score=82.22 Aligned_cols=152 Identities=15% Similarity=0.256 Sum_probs=89.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
|.....++|.+...+.+..++..+ .-..++.++|.+|+||||+|+++++.....| ..+. .+. .....+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-----~~~-~~~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-----GSD-CRIDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-----cCc-ccHHHHHH
Confidence 445578999999999999988643 2346777799999999999999998763222 2222 111 11222211
Q ss_pred HHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh---HHHHHHHcccCCCCCCcEEEEEeCChhHH-HHhCCC
Q 046888 261 QVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF---EQLKYLVGWLDGFCPGSRIVVTTRDKQVL-RKQGVK 336 (1170)
Q Consensus 261 ~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~~~~ 336 (1170)
.+ ...... ..+...+-++|+|+++.. +..+.+...+.....+.++|+||.....+ ... ..
T Consensus 87 ~l-~~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l-~s 150 (316)
T PHA02544 87 RL-TRFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL-RS 150 (316)
T ss_pred HH-HHHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH-Hh
Confidence 11 111100 011234557889999754 22334443344445677899888754321 111 11
Q ss_pred CcceEeecCCCHhHHHHHHHHH
Q 046888 337 DEHVYEVERLNEDEGLELFYKY 358 (1170)
Q Consensus 337 ~~~~~~l~~L~~~ea~~Lf~~~ 358 (1170)
....+.++..+.++..+++...
T Consensus 151 R~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHHH
Confidence 1256788888888887776543
No 116
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.91 E-value=7.1e-06 Score=68.42 Aligned_cols=59 Identities=37% Similarity=0.638 Sum_probs=33.5
Q ss_pred CCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCC
Q 046888 756 GLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNF 821 (1170)
Q Consensus 756 ~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l 821 (1170)
+|++|++++|++. .+|...+.++++|+.|+|++|+++.++ ..+..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4555555555443 344444556666666666666666543 3556666666666666653
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.91 E-value=0.0052 Score=70.37 Aligned_cols=206 Identities=12% Similarity=0.128 Sum_probs=117.7
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc--CcCHHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN--GVGLVH 257 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~--~~~~~~ 257 (1170)
.+...+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.++.+.+=-.++++ ++.. +.. ..+...
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~-~~~~~~~~~~~ 80 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQ-LGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-Eeec-CCCcccCCHHH
Confidence 455666788998666666666643 135899999999999999999999876542334444 3433 221 234555
Q ss_pred HHHHHHHHHhcCcccC------------CCCChhHHHHHHh---cCCCeEEEEeCCCChHH----HHHHHcccC-CCC--
Q 046888 258 LHKQVVSLLLGERLET------------GGPNIPAYALERL---RRTKVFMVLDDVSEFEQ----LKYLVGWLD-GFC-- 315 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~------------~~~~l~~~l~~~L---~~kk~LlVLDdv~~~~~----~~~l~~~~~-~~~-- 315 (1170)
..+.+...+...-... ........+.+.+ .+++++|++|+|+..-. .+.+.+.+. |..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 5555444443321110 1122222333332 25899999999975321 122222111 100
Q ss_pred -----CCc-EEEE-Ee-CChhHHHHhC--CCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 316 -----PGS-RIVV-TT-RDKQVLRKQG--VKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 316 -----~gs-rIIi-TT-R~~~v~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
-.+ ++++ .+ +......... .+-...++|++++.+|...|...+-.. .. ....+++...+||+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHH
Confidence 011 2222 22 1111111100 112257899999999999999887422 11 1227889999999999
Q ss_pred HHHHHHHHhcC
Q 046888 386 ALEVLGSSLQQ 396 (1170)
Q Consensus 386 Al~~lg~~L~~ 396 (1170)
-+..++..+..
T Consensus 235 Lv~~~~~~l~~ 245 (331)
T PF14516_consen 235 LVQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00077 Score=81.89 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC--C---------------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF--E--------------------- 237 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~--------------------- 237 (1170)
|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-... .
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 4455689999999999999986432 234578999999999999999998654211 0
Q ss_pred ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCC
Q 046888 238 GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFC 315 (1170)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~ 315 (1170)
.++.+. .....++..+ +++...+. ..-..+++-++|+|+++. .+..+.|+..+....
T Consensus 88 dvieid-----aas~~gvd~i-Rel~~~~~---------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp 146 (584)
T PRK14952 88 DVVELD-----AASHGGVDDT-RELRDRAF---------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP 146 (584)
T ss_pred eEEEec-----cccccCHHHH-HHHHHHHH---------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC
Confidence 000110 0011112211 11111110 001124555889999974 455677777666555
Q ss_pred CCcEEEEEe-CChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHHHH
Q 046888 316 PGSRIVVTT-RDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVLGS 392 (1170)
Q Consensus 316 ~gsrIIiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg~ 392 (1170)
....+|++| ....+...... ....++...++.++..+.+.+.+-..+.. -..+....|++.++|.+- |+..+-.
T Consensus 147 ~~~~fIL~tte~~kll~TI~S-Rc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRS-RTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHH-hceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566655544 44444433221 12789999999999998888776433221 123345678888999874 4444433
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6e-07 Score=94.52 Aligned_cols=180 Identities=20% Similarity=0.206 Sum_probs=94.4
Q ss_pred cCccccCCCCCcc--cccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCccccccccccccc
Q 046888 614 NLIELNLPFSKVV--QIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLT 690 (1170)
Q Consensus 614 ~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~ 690 (1170)
.|++|||+++.|+ ++-.-++.+.+|+.|.|.++++...+-. +.+-.+|+.|+|+.|..+ +.|.... -+.+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~--t~n~~~l---l~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF--TENALQL---LLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--chhHHHH---HHHhhh
Confidence 4778888888776 4444457778888888888775443332 555667777777777544 1111111 145666
Q ss_pred ccceeeccccccccccccc-ccC-CCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCC
Q 046888 691 NLEYLYINRCKRLKRVSTS-ICK-LKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLP 768 (1170)
Q Consensus 691 ~L~~L~L~~~~~l~~lp~~-i~~-L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~ 768 (1170)
.|..|+|+.|......-.. +.+ -.+|..|+++||...- ....+..-
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------~~sh~~tL------------------ 308 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------QKSHLSTL------------------ 308 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------hhhHHHHH------------------
Confidence 6667777666533221110 000 1233334444432100 00001011
Q ss_pred CcCcCCcccCccccCCCCCCCEEeCCCCC-CCC-CCcccCCCCCCCEEECcCCCCc--cccccccCCCCCCEEEecCCC
Q 046888 769 HLLSGLVSLPASLLSGLFSLNWLNLNNCA-LTA-IPEEIGCLPSLEWLELRENNFE--SLPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 769 ~~~~~l~~lp~~~l~~l~~L~~L~L~~~~-l~~-ip~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~ 843 (1170)
...+++|..|||++|. ++. .-..+..++.|++|.|+.|..- +---.+...|+|.+|++.+|-
T Consensus 309 -------------~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 -------------VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -------------HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 2345556666666653 222 3334556777777777777431 111135667788888888874
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.86 E-value=0.00041 Score=74.38 Aligned_cols=157 Identities=14% Similarity=0.223 Sum_probs=85.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCC--ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFE--GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALE 284 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~ 284 (1170)
....+.|+|..|.|||.|.+++++++....+ .++++. .......+...+... . ...+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~-------~-~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDG-------E-IEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTT-------S-HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHcc-------c-chhhhh
Confidence 3456889999999999999999998776543 234443 223333343333321 1 122335
Q ss_pred HhcCCCeEEEEeCCCCh---HHH-HHHHcccCC-CCCCcEEEEEeCCh-h--------HHHHhCCCCcceEeecCCCHhH
Q 046888 285 RLRRTKVFMVLDDVSEF---EQL-KYLVGWLDG-FCPGSRIVVTTRDK-Q--------VLRKQGVKDEHVYEVERLNEDE 350 (1170)
Q Consensus 285 ~L~~kk~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIIiTTR~~-~--------v~~~~~~~~~~~~~l~~L~~~e 350 (1170)
.++. -=+|++||++.. ..+ +.+...++. ...|.+||+|++.. . +...+.. +-++++++++.++
T Consensus 94 ~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 94 RLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--GLVVELQPPDDED 170 (219)
T ss_dssp HHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--SEEEEE----HHH
T ss_pred hhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--cchhhcCCCCHHH
Confidence 5553 446788999653 212 233322222 23577899999543 1 1122222 2689999999999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 351 GLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 351 a~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
..+++.+.+-...-. --++++.-+++.+.+..-.|
T Consensus 171 r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 171 RRRILQKKAKERGIE--LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHH
Confidence 999999988433221 22344455555555444333
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.83 E-value=0.00015 Score=80.24 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=81.6
Q ss_pred ccccchhHHHHHHHHhh----------c---CCCCeEEEEEEecCCChHHHHHHHHHHHHhccC--CceEEEEechhhhh
Q 046888 186 GLVGLSSRIECIKSLLC----------T---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF--EGKCFIENVREEIE 250 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~----------~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~ 250 (1170)
.++|.+...++|.+... . ..+...-+.++|++|+||||+|+.+++.+...- ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-----~~ 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-----VE 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-----ec
Confidence 47887777666654322 0 123456788999999999999999998753211 1112221 10
Q ss_pred cCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC----------hHHHHHHHcccCCCCCCcEE
Q 046888 251 NGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE----------FEQLKYLVGWLDGFCPGSRI 320 (1170)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~----------~~~~~~l~~~~~~~~~gsrI 320 (1170)
...+ .....+. ....+...+ +.. ..-+|++|+++. .++++.+..........-.+
T Consensus 82 ----~~~l----~~~~~g~----~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 82 ----RADL----VGEYIGH----TAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ----HHHh----hhhhccc----hHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 0111 1111000 001111111 111 134788999964 23456666555443333355
Q ss_pred EEEeCChhHHH------Hh--CCCCcceEeecCCCHhHHHHHHHHHHh
Q 046888 321 VVTTRDKQVLR------KQ--GVKDEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 321 IiTTR~~~v~~------~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
|+++.....-. .. ... ..++++.++.+|-.+++.+.+-
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~--~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFP--ISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccc--eEEEECCCCHHHHHHHHHHHHH
Confidence 56654332211 11 122 5689999999999999987764
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0012 Score=80.61 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=110.6
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC----ceEEEEechhhhhcCcCH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE----GKCFIENVREEIENGVGL 255 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~~~~~~~~ 255 (1170)
.|.....++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... +..+- ..+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~---------~cg~ 88 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID---------LCGV 88 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc---------cCcc
Confidence 34556789999999999999886442 2456889999999999999999987643221 00000 0000
Q ss_pred HHHHHHHHHHHhcC------cccCCCCChhHHHHHH-----hcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEE
Q 046888 256 VHLHKQVVSLLLGE------RLETGGPNIPAYALER-----LRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVV 322 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~------~~~~~~~~l~~~l~~~-----L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi 322 (1170)
-.-.+.+......+ ....+.+.+++.+ +. ...++-++|+|+++.. ...+.|+..+....+.+.+|+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl 167 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIF 167 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 00000000000000 0000111111111 11 1234456899999654 446667666655556666665
Q ss_pred Ee-CChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 323 TT-RDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 323 TT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
+| ....+..... .....++++.++.++..+.+.+.+-..... -..+....|++.++|.+.-+.
T Consensus 168 ~tte~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 168 ATTEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred EeCChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 44 4444443321 123689999999999999998876433221 123456778999999886443
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.83 E-value=0.00012 Score=90.46 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=40.4
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
|...+.++|.+..++.+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44556799999999988777643 334679999999999999999998755
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0011 Score=81.09 Aligned_cols=196 Identities=12% Similarity=0.100 Sum_probs=106.4
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc--CCceEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE--FEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
|...+.+||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+.-.|.....+ ..+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCHH
Confidence 455678999999999999888543 223458899999999999999999876321 110011110000 0000000
Q ss_pred HHHHHHHHhc-----Cc-ccCCCCChhHHHHHH-----hcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEe-
Q 046888 259 HKQVVSLLLG-----ER-LETGGPNIPAYALER-----LRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTT- 324 (1170)
Q Consensus 259 ~~~ll~~l~~-----~~-~~~~~~~l~~~l~~~-----L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT- 324 (1170)
.+.+...-.. .. ...+.+.++.. .+. ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l-~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQL-RENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHH-HHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 0000000000 00 00011112211 111 2234557899999754 44666776666554556655544
Q ss_pred CChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 325 RDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 325 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
+...+..... .....+++.+++.++....+.+.+-..+. .-..+.+..+++.++|..-
T Consensus 166 ~~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 4444443321 12378999999999988888776533221 1123456778899998654
No 125
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00037 Score=81.51 Aligned_cols=181 Identities=12% Similarity=0.151 Sum_probs=106.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc--------CCceEEEEechhhhhcC
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE--------FEGKCFIENVREEIENG 252 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~~ 252 (1170)
|..-+.++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-.+ ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~----~~~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD----AASN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec----cccC
Confidence 445577899999999999988643 224578899999999999999998876431 222222110 0111
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEe-CChhH
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTT-RDKQV 329 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT-R~~~v 329 (1170)
.+...+ .++..++.. .-..+++-++|+|+++.. ..++.+...+........+|++| +...+
T Consensus 88 ~~~~~i-~~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDDI-RNLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHHH-HHHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 112222 122222110 011234557999998643 34666655444433455565555 33333
Q ss_pred HHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 330 LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
..... .....++.++++.++....+...+...+.. -..+....+++.++|.+-
T Consensus 152 ~~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 32221 112579999999999999888877543321 123456778888888765
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0012 Score=81.58 Aligned_cols=196 Identities=15% Similarity=0.145 Sum_probs=110.1
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
|...+.+||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+....... .....+.....+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~---------~~~~c~~c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP---------KGRPCGTCEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccCHHHH
Confidence 4455689999999999988886432 235678999999999999999998763211000 000000011111
Q ss_pred HHHHHHhcCc------ccCCCCChhHHHHHHh-----cCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC-
Q 046888 261 QVVSLLLGER------LETGGPNIPAYALERL-----RRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRD- 326 (1170)
Q Consensus 261 ~ll~~l~~~~------~~~~~~~l~~~l~~~L-----~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~- 326 (1170)
.+........ ...+.+.+++ +.+.+ ..++-++|+|+++.. +..+.|+..+....+...+|++|.+
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1110000000 0000111111 11111 234568999999643 5567777666555556666666543
Q ss_pred hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 327 KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 327 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
..+..... .....++++.++.++....+.+.+...+.. -..+.+..+++.++|.+..+...
T Consensus 161 ~kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 161 HKVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333221 122678899999999998888776443221 12345678899999988654433
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00084 Score=79.84 Aligned_cols=187 Identities=15% Similarity=0.207 Sum_probs=107.9
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC---C----ceE-------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---E----GKC------------- 240 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~----~~~------------- 240 (1170)
|...++++|.+..++.+...+..+. -...+.++|..|+||||+|+.+++.+-..= + +.|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 4556789999999999999886432 235678999999999999999998763210 0 000
Q ss_pred EEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCc
Q 046888 241 FIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGS 318 (1170)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 318 (1170)
|+. +. .....+...+. ++...+. .....+++-++|+|+++.. +..+.|+..+....+..
T Consensus 92 ~~~-i~--g~~~~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 VLE-ID--GASHRGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eEE-ee--ccccCCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 110 00 00011111111 1111110 0112245667899998643 34566666555544566
Q ss_pred EEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046888 319 RIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVL 390 (1170)
Q Consensus 319 rIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 390 (1170)
.+|++|.. ..+..... .....+++++++.++..+.+...+-+.+. .-..+.+..++++++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666543 33332221 11267999999999999888877633221 1223456788899999764 44433
No 128
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=1.5e-06 Score=101.43 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=75.4
Q ss_pred ccccccccccceeecccccccccccccccCC-CcccEEecCC-----------CC-Cchhhhc--cccEEEccCcCCccc
Q 046888 683 PSSVECLTNLEYLYINRCKRLKRVSTSICKL-KSLIWLCLNE-----------CL-NLESFLE--SLKKINLGRTTVTEL 747 (1170)
Q Consensus 683 p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~-----------c~-~l~~~~~--~L~~L~L~~~~i~~l 747 (1170)
|-+|..+.+|+.|.|.+|.... . .++..+ ..|++|.-.+ |- .+.+-|. .|...+.+.|.+..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 5567778899999999987432 1 111111 1233332111 10 0000011 144445555555555
Q ss_pred CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccccc
Q 046888 748 PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVS 827 (1170)
Q Consensus 748 p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 827 (1170)
..++.-++.|+.|+|+.|++... . .+..++.|++|||+.|.+..+|.--..--.|+.|+|++|.++++- .
T Consensus 180 D~SLqll~ale~LnLshNk~~~v-------~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-g 249 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV-------D--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-G 249 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh-------H--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-h
Confidence 55555566666666666665431 1 144555666666666666655532111112666666666665554 4
Q ss_pred ccCCCCCCEEEecCCC
Q 046888 828 IKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 828 l~~l~~L~~L~L~~c~ 843 (1170)
+.+|.+|+.|||++|-
T Consensus 250 ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHhhhhhhccchhHhh
Confidence 5566666666666654
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00083 Score=82.54 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=108.6
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhh-----------
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREE----------- 248 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~----------- 248 (1170)
.|.....++|-+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-..-....+- .+..+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECIENVNNSLDII 90 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHHHhhcCCCcEE
Confidence 34455679999999999999886432 245678999999999999999998653210000000 00000
Q ss_pred ---hhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEE-E
Q 046888 249 ---IENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIV-V 322 (1170)
Q Consensus 249 ---~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrII-i 322 (1170)
.....+... .+++...+.. .-..+++-++|+|+++.. ..+..|+..+....+...+| +
T Consensus 91 eidaasn~~vd~-IReLie~~~~---------------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 91 EMDAASNNGVDE-IRELIENVKN---------------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred EEeccccCCHHH-HHHHHHHHHh---------------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 000011111 1111111100 012245668899999653 45677776665544555555 4
Q ss_pred EeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046888 323 TTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVL 390 (1170)
Q Consensus 323 TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 390 (1170)
|++...+..... .....+++.+++.++..+.+...+-..+. ....+.+..+++.++|.+- |+..+
T Consensus 155 Tte~~KLl~TI~-SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 155 TTEVHKIPLTIL-SRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred cCChhhhhHHHH-hhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544444443321 12268999999999999888876533221 1123346778899988764 44433
No 130
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.74 E-value=0.00063 Score=76.00 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=82.7
Q ss_pred ccccchhHHHHHHHHhh----------cCC---CCeEEEEEEecCCChHHHHHHHHHHHHhccC--CceEEEEechhhhh
Q 046888 186 GLVGLSSRIECIKSLLC----------TGL---PDVRIVGIWGMGGIGKTTIVKALFNQISNEF--EGKCFIENVREEIE 250 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~----------~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~ 250 (1170)
.++|.+...++|.++.. .+- ....-+.++|.+|.||||+|+.++..+...- ....|+. ++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-----v~ 97 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-----VT 97 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-----ec
Confidence 35777766666554322 010 1123588999999999999999988664321 1112332 11
Q ss_pred cCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-----------HHHHHHHcccCCCCCCcE
Q 046888 251 NGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-----------EQLKYLVGWLDGFCPGSR 319 (1170)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsr 319 (1170)
.. ++...+.+... ..+...+ +.. ..-+|+||+++.. +..+.|...+.....+-+
T Consensus 98 ----~~----~l~~~~~g~~~----~~~~~~~-~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 98 ----RD----DLVGQYIGHTA----PKTKEIL-KRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred ----HH----HHhHhhcccch----HHHHHHH-HHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 01 12222221110 1111111 111 2358889999632 234555555554445557
Q ss_pred EEEEeCChhHHHHhCCC------CcceEeecCCCHhHHHHHHHHHHh
Q 046888 320 IVVTTRDKQVLRKQGVK------DEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 320 IIiTTR~~~v~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
||+++-....-.....+ -...+++++++.+|-.+++...+-
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 77776543221111110 015799999999999999988763
No 131
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=3.2e-05 Score=87.14 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=58.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc-cCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCC-CChh-----
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN-EFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGG-PNIP----- 279 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-~~l~----- 279 (1170)
.-+..+|+|++|+||||||+++|+.+.. +|+..+|+..+++ . ...+..+++++...+......... ...+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE-R--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE-R--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC-c--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 3467899999999999999999997654 7999999985554 1 125667777775432222111100 0000
Q ss_pred HHHHHH--hcCCCeEEEEeCCCCh
Q 046888 280 AYALER--LRRTKVFMVLDDVSEF 301 (1170)
Q Consensus 280 ~~l~~~--L~~kk~LlVLDdv~~~ 301 (1170)
-...++ -.+++++|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 001122 3579999999999543
No 132
>PRK06620 hypothetical protein; Validated
Probab=97.72 E-value=0.0002 Score=76.37 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=74.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR 288 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~ 288 (1170)
+.+.|+|++|+|||+||+++++... ..++.... .. . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~~~------~~------------------------~----~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKDIF------FN------------------------E----EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcchhh------hc------------------------h----hHHh-
Confidence 6689999999999999999776542 12322000 00 0 1111
Q ss_pred CCeEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChhH-------HHHhCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 289 TKVFMVLDDVSEFEQ--LKYLVGWLDGFCPGSRIVVTTRDKQV-------LRKQGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 289 kk~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIIiTTR~~~v-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
..-++++||++...+ +-.+...+. ..|..||+|++.... ...+.. +-+++++++++++..+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~--gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKS--VLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhC--CceEeeCCCCHHHHHHHHHHHH
Confidence 234678899975432 222222222 356789999874421 112222 2589999999999888887776
Q ss_pred hccCCCChhHHHHHHHHHHHhCCCh
Q 046888 360 FRQNHRPEHLTVLSKKAVRYAEGNP 384 (1170)
Q Consensus 360 f~~~~~~~~~~~~~~~i~~~~~GlP 384 (1170)
.... -.-.+++.+-|++.+.|.-
T Consensus 161 ~~~~--l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 161 SISS--VTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHcC--CCCCHHHHHHHHHHccCCH
Confidence 3221 1112344455666665543
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.0014 Score=70.41 Aligned_cols=192 Identities=15% Similarity=0.185 Sum_probs=116.0
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh--ccCCceEEEEechhhhhcCcCHH-
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS--NEFEGKCFIENVREEIENGVGLV- 256 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~~~~~~~~- 256 (1170)
.|...+.++|-+..++-|...+.. ........+|++|.|||+-|++++.++- +-|++++.-.+ ++...|..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln----aSderGisv 104 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN----ASDERGISV 104 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc----ccccccccc
Confidence 345567899999999999888854 5678899999999999999999998753 34554443222 22222222
Q ss_pred -HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCC-eEEEEeCCCCh--HHHHHHHcccCCCCCCcEEE-EEeCChhHHH
Q 046888 257 -HLHKQVVSLLLGERLETGGPNIPAYALERLRRTK-VFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIV-VTTRDKQVLR 331 (1170)
Q Consensus 257 -~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrII-iTTR~~~v~~ 331 (1170)
.....-.+++........ ..- ..+ -.+|||+++.. +.|..|......+...+|.| ||+--..+..
T Consensus 105 vr~Kik~fakl~~~~~~~~---------~~~-~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSD---------GYP-CPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhhhcCHHHHhhcccccc---------CCC-CCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 111111111111110000 000 112 36899999864 56888888777777777754 5543332222
Q ss_pred HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 046888 332 KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP-LALEVL 390 (1170)
Q Consensus 332 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~l 390 (1170)
.. +.....|.-++|.+++..+-+...+-+.+..- ..+..+.|+++++|-- -|+.++
T Consensus 175 pi-~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 175 PL-VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HH-HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 11 11225688999999999998888885444322 2345678899998853 344443
No 134
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.71 E-value=0.0005 Score=81.73 Aligned_cols=158 Identities=22% Similarity=0.340 Sum_probs=91.0
Q ss_pred CCCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccC-----CceEEEEech
Q 046888 183 SSKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-----EGKCFIENVR 246 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~ 246 (1170)
.-..+.|.+..++++...+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345688899999988876531 123356689999999999999999999876542 2344443 21
Q ss_pred h-hhhcCc-C-HHHHHHHHHHHHhcCcccCCCCChhHHHHHH-hcCCCeEEEEeCCCChH---------H-----HHHHH
Q 046888 247 E-EIENGV-G-LVHLHKQVVSLLLGERLETGGPNIPAYALER-LRRTKVFMVLDDVSEFE---------Q-----LKYLV 308 (1170)
Q Consensus 247 ~-~~~~~~-~-~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~-L~~kk~LlVLDdv~~~~---------~-----~~~l~ 308 (1170)
. .....+ + .....+.++. ...+. -.+++++|+||+++..- + +..++
T Consensus 259 ~~eLl~kyvGete~~ir~iF~----------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQ----------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred chhhcccccchHHHHHHHHHH----------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 1 000000 0 0011111111 11111 23478999999996421 1 23444
Q ss_pred cccCCCC--CCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 309 GWLDGFC--PGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 309 ~~~~~~~--~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
..++... .+..||.||-....+... ..+ ..++++..+.++..++|..+.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD--~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLD--VKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccc--eEEEeCCCCHHHHHHHHHHHh
Confidence 4444322 334455566444332211 234 679999999999999999886
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00095 Score=79.86 Aligned_cols=184 Identities=11% Similarity=0.067 Sum_probs=110.4
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc--------------------CCceE
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE--------------------FEGKC 240 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------F~~~~ 240 (1170)
|.....+||-+...+.|...+..+. -..+..++|..|.||||+|+.+++.+-.. +...+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4455789999999999999886442 24566899999999999999999876311 00011
Q ss_pred EEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCc
Q 046888 241 FIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGS 318 (1170)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 318 (1170)
+..+ .....++..+...+ ..... .-..+++-++|+|+++.. +..+.|+..+....+.+
T Consensus 89 ~eld----aas~~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 89 IEMD----AASNRGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred EEec----cccccCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 1100 01111222222211 11100 001134568899999753 45677776666555667
Q ss_pred EEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 319 RIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 319 rIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
++|++|.+. .+...... ....+++.+++.++..+.+.+.+-..+.. -..+.+..|++.++|.+--+.
T Consensus 149 ~FIL~ttd~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 149 KFILATTDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EEEEEECChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 777777664 22222211 23789999999999999887776433221 123456788999999885443
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.69 E-value=0.00056 Score=79.69 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=91.0
Q ss_pred CCCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 183 SSKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+. .
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-----~-- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-----G-- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-----h--
Confidence 335789999999988876541 1134578999999999999999999987654331 111 0
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh------------H----HHHHHHcccCCC-
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF------------E----QLKYLVGWLDGF- 314 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~------------~----~~~~l~~~~~~~- 314 (1170)
..+.... .++ +...+.+.+.......+.+|++|+++.. . .+..++..++.+
T Consensus 213 ----s~l~~k~----~ge----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ----SEFVQKY----LGE----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ----HHHHHHh----cch----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 0011100 000 0111121222233457889999997532 0 123333333322
Q ss_pred -CCCcEEEEEeCChhHHHH-----hCCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 315 -CPGSRIVVTTRDKQVLRK-----QGVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 315 -~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
..+..||+||.....+.. -..+ ..++++..+.++..++|..+.-+
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd--~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLD--RKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCccc--EEEEeCCcCHHHHHHHHHHHHhc
Confidence 235567888875543322 1234 67899999999999999877643
No 137
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.0011 Score=70.44 Aligned_cols=265 Identities=17% Similarity=0.207 Sum_probs=144.7
Q ss_pred CCCCCCccccchhHHHHHHHHhhc---CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCT---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLV 256 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 256 (1170)
.|.....|||-++..++|.-++.. .....--|.++|++|.||||||.-+++++...+.. . ......+..+
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-sGp~leK~gD-- 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-SGPALEKPGD-- 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-ccccccChhh--
Confidence 355667899999999998877753 22345679999999999999999999988654321 1 0000111111
Q ss_pred HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH-HHHHHH-ccc--------CCCCCCcE-------
Q 046888 257 HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE-QLKYLV-GWL--------DGFCPGSR------- 319 (1170)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~-~~~~l~-~~~--------~~~~~gsr------- 319 (1170)
++.-+ .-|...-+ +.+|.+.... ..++++ ... -..++++|
T Consensus 94 -----laaiL-----------------t~Le~~DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 94 -----LAAIL-----------------TNLEEGDV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred -----HHHHH-----------------hcCCcCCe-EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 11111 22333333 3346664321 122221 000 11234444
Q ss_pred ----EEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhc
Q 046888 320 ----IVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQ 395 (1170)
Q Consensus 320 ----IIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~ 395 (1170)
|=.|||.-.+..-..-.-+.+..++.-+.+|-.++..+.+-.-+ -+-.++-+.+|+++..|-|--..-+-+..+
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 33588876443322111125678899999999999988873222 122345678899999999964333322222
Q ss_pred CCCHHHHHHHHHH--HhhcCChhhHHHHHHHHHhcCCHHHHHHHhhccccc--CCCCHHHHHHHHhhCCCCHHHHHH-HH
Q 046888 396 QKSKQDWENVLDN--LKQISGASRIYKLLRISYEELTFEEKSIFLDIACFF--KGEGKDRVLMLLHDRQYNVTQALS-VL 470 (1170)
Q Consensus 396 ~~~~~~w~~~l~~--l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~--~~~~~~~l~~l~~~~~~~~~~~l~-~L 470 (1170)
. +..+-.. +...- .....+.|.+-=.+|+...++.+.-+.-.+ .+...+.+...+..+....++.++ -|
T Consensus 229 D-----fa~V~~~~~I~~~i-a~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyL 302 (332)
T COG2255 229 D-----FAQVKGDGDIDRDI-ADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 (332)
T ss_pred H-----HHHHhcCCcccHHH-HHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHH
Confidence 1 1100000 00000 022344444444567777777776666555 334566666666544444444444 58
Q ss_pred HhcCCcEEe-CCe
Q 046888 471 IDKSLIIEH-NNR 482 (1170)
Q Consensus 471 ~~~sLi~~~-~~~ 482 (1170)
+..++|+.. .+|
T Consensus 303 iq~gfi~RTpRGR 315 (332)
T COG2255 303 IQQGFIQRTPRGR 315 (332)
T ss_pred HHhchhhhCCCcc
Confidence 889999877 344
No 138
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.69 E-value=0.00019 Score=84.15 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=90.7
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
.++.|.+..++++.+.+.. +-...+-|.++|.+|.|||++|++++++....|- .+.. .+ ..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-se-L~--- 254 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SE-LI--- 254 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-ch-hh---
Confidence 5678999999999887642 1123467889999999999999999998765441 1110 00 00
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------------HHHHHHcccCCC--C
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------------QLKYLVGWLDGF--C 315 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 315 (1170)
... .+. +...+...+.....+.+.+|+||+++... .+..++..++.+ .
T Consensus 255 ------~k~----~Ge----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 255 ------QKY----LGD----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ------hhh----cch----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 000 000 00011111112223567888999874311 122333333322 2
Q ss_pred CCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 316 PGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 316 ~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
.+.+||+||.....+... ..+ ..++++..+.++..++|..+..+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd--~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRID--RKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeE--EEEEeCCCCHHHHHHHHHHHHhc
Confidence 355788888765444332 223 67899999999999999988744
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00044 Score=87.80 Aligned_cols=169 Identities=16% Similarity=0.212 Sum_probs=94.5
Q ss_pred HHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC----
Q 046888 161 MLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---- 236 (1170)
Q Consensus 161 ~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---- 236 (1170)
..+.+...++..+. .+..-+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++...-
T Consensus 163 ~~l~~~~~~l~~~~-----r~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 163 DALEKYTVDLTEKA-----KNGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred hHHHHHhhhHHHHH-----hcCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 35555555555444 23344579999999999998886432 33467999999999999999999874431
Q ss_pred --CceEEEEechhhhhc-C--cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh-cCCCeEEEEeCCCCh---------
Q 046888 237 --EGKCFIENVREEIEN-G--VGLVHLHKQVVSLLLGERLETGGPNIPAYALERL-RRTKVFMVLDDVSEF--------- 301 (1170)
Q Consensus 237 --~~~~~~~~~~~~~~~-~--~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L-~~kk~LlVLDdv~~~--------- 301 (1170)
...+|..+....... . .....-.+++ + +.+ ..++.+|++|+++..
T Consensus 236 l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i-------------------~-~~~~~~~~~ILfiDEih~l~~~g~~~~~ 295 (731)
T TIGR02639 236 LKNAKIYSLDMGSLLAGTKYRGDFEERLKAV-------------------V-SEIEKEPNAILFIDEIHTIVGAGATSGG 295 (731)
T ss_pred hcCCeEEEecHHHHhhhccccchHHHHHHHH-------------------H-HHHhccCCeEEEEecHHHHhccCCCCCc
Confidence 234444332220100 0 0011111111 1 222 245789999998532
Q ss_pred --HHHHHHHcccCCCCCCc-EEEEEeCChhHHHHhC-----CCCcceEeecCCCHhHHHHHHHHHH
Q 046888 302 --EQLKYLVGWLDGFCPGS-RIVVTTRDKQVLRKQG-----VKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 302 --~~~~~l~~~~~~~~~gs-rIIiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
+..+.|...+. .|. ++|-+|...+...... ......++++.++.++..+++....
T Consensus 296 ~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 296 SMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 12223333322 332 4454444322111000 0112578999999999999998654
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=1.7e-05 Score=83.91 Aligned_cols=219 Identities=19% Similarity=0.187 Sum_probs=116.4
Q ss_pred eeEEEecCCCCCCCCCC--C--CCCcCccccCCCCCccc---ccccccccccceeecCCCCCCCccCCCC-CCCCccccc
Q 046888 593 LRYLHLHKYPLRTLPSN--F--KPKNLIELNLPFSKVVQ---IWEGKKKAFKLKSINLSHSQYLIRIPDP-SEAPNLERI 664 (1170)
Q Consensus 593 Lr~L~l~~~~l~~lp~~--~--~~~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~Ls~~~~l~~~p~~-~~l~~L~~L 664 (1170)
+..|.+.++.+...... | ....+++|||..|.|.. +-.-+.+|+.|++|+|++|.+...+..+ ..+.||+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33455555555443221 1 45677888888887763 2223477888888888888765444333 245567777
Q ss_pred cccCCcccccCCCcccccccccccccccceeecccccccc-ccc-ccccC-CCcccEEecCCCCCchhhhccccEEEccC
Q 046888 665 NLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLK-RVS-TSICK-LKSLIWLCLNECLNLESFLESLKKINLGR 741 (1170)
Q Consensus 665 ~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp-~~i~~-L~~L~~L~l~~c~~l~~~~~~L~~L~L~~ 741 (1170)
.|.|- .| ..+.+...+..+++++.|.++.|..-. .+. ..+.. -+.+++|...+|... +.++-
T Consensus 127 VLNgT-~L-----~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~---------~w~~~ 191 (418)
T KOG2982|consen 127 VLNGT-GL-----SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ---------LWLNK 191 (418)
T ss_pred EEcCC-CC-----ChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH---------HHHHH
Confidence 66651 11 113334456777788888877763110 000 00111 123444555454211 11111
Q ss_pred cCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC--CcccCCCCCCCEEECcCC
Q 046888 742 TTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI--PEEIGCLPSLEWLELREN 819 (1170)
Q Consensus 742 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i--p~~l~~l~~L~~L~L~~n 819 (1170)
|++. .-++++..+-+..|.+.... .......++.+.-|+|+.++|.+. -+.+..++.|..|.++++
T Consensus 192 ~~l~------r~Fpnv~sv~v~e~PlK~~s------~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 192 NKLS------RIFPNVNSVFVCEGPLKTES------SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred HhHH------hhcccchheeeecCcccchh------hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 1111 12355555666666553211 011144556666777777777763 356677888888888887
Q ss_pred CCc-cc----c--ccccCCCCCCEEE
Q 046888 820 NFE-SL----P--VSIKQLSRLKRLD 838 (1170)
Q Consensus 820 ~l~-~l----p--~~l~~l~~L~~L~ 838 (1170)
.+. .+ + --++.|++++.|+
T Consensus 260 Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 260 PLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cccccccCCcceEEEEeeccceEEec
Confidence 654 11 1 1356777777775
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0012 Score=79.01 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=107.0
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCce
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGK 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 239 (1170)
|.....++|-+..++.+...+..+. -.....++|+.|+||||+|+.++..+-.. +...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 4455678999999999999986532 23456789999999999999999875311 0001
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~g 317 (1170)
..+. .....+...+ +.+...+.. .-..+++-++|+|+++.. +..+.|+..+....+.
T Consensus 91 ~eid-----aas~~gvd~i-r~I~~~~~~---------------~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEID-----AASNRGIDDI-RALRDAVSY---------------TPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEe-----CccCCCHHHH-HHHHHHHHh---------------CcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1110 0011111111 111111100 011345668999999754 4456666666554455
Q ss_pred cEEEEEe-CChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 318 SRIVVTT-RDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 318 srIIiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
..+|++| +...+..... .....+++.+++.++..+.+...+-..+.. ...+.+..+++.++|.+..+..+
T Consensus 150 ~v~Il~tt~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 150 TIFILCTTEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred eEEEEEECCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555555 4333332221 112679999999999998888876432221 12344567888899977544433
No 142
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.67 E-value=3.3e-06 Score=93.38 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCcCccccCCCCC-cc--cccccccccccceeecCCCCCCCccCCC---CCCCCccccccccCCcccccCCCccccccc
Q 046888 611 KPKNLIELNLPFSK-VV--QIWEGKKKAFKLKSINLSHSQYLIRIPD---PSEAPNLERINLWNCTHLNLCDTAIEEVPS 684 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~-i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~---~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~ 684 (1170)
++++++.|++.++. ++ .+-.--..+.+|++|+|..|..++...- ...+++|++|+++.|..+ ++|.++.+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi--~~~gv~~~-- 237 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI--SGNGVQAL-- 237 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh--hcCcchHH--
Confidence 45555555555543 21 1112224566777777777654433221 235666666666666544 22222222
Q ss_pred ccccccccceeeccccc
Q 046888 685 SVECLTNLEYLYINRCK 701 (1170)
Q Consensus 685 ~i~~l~~L~~L~L~~~~ 701 (1170)
..++.+|+.+.+++|.
T Consensus 238 -~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 238 -QRGCKELEKLSLKGCL 253 (483)
T ss_pred -hccchhhhhhhhcccc
Confidence 2334445555555554
No 143
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=9.5e-07 Score=103.05 Aligned_cols=91 Identities=25% Similarity=0.247 Sum_probs=50.8
Q ss_pred ccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhh------ccccEEEccCcCCcc
Q 046888 673 NLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFL------ESLKKINLGRTTVTE 746 (1170)
Q Consensus 673 ~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~------~~L~~L~L~~~~i~~ 746 (1170)
+.+.|.+..+..++.-++.|++|||++|+....- .+..|+.|++|+|+.+. +..+| ..|..|.+++|.+++
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTT 246 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHh
Confidence 4566777777777888888888888887744332 45566666666665531 11111 114455555555444
Q ss_pred cCccccCCCCCCEEEccCCCC
Q 046888 747 LPSSFENIEGLGTLGLERSQL 767 (1170)
Q Consensus 747 lp~~l~~l~~L~~L~L~~~~~ 767 (1170)
+ ..+.+|++|+.|+++.|-+
T Consensus 247 L-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 247 L-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred h-hhHHhhhhhhccchhHhhh
Confidence 4 2344444555555554443
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.64 E-value=0.0031 Score=74.74 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=90.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCC--ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFE--GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
...+.|+|.+|+|||.||+++++.+..+.+ .++|+. . ..+..++...+... . ...+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~-------~-~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S----------EKFTNDFVNALRNN-------K-MEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H----------HHHHHHHHHHHHcC-------C-HHHHHHH
Confidence 346899999999999999999998876543 234443 1 12223333333221 1 1122244
Q ss_pred hcCCCeEEEEeCCCCh----HHHHHHHcccCCC-CCCcEEEEEeCC-hhHHHHh------CCCCcceEeecCCCHhHHHH
Q 046888 286 LRRTKVFMVLDDVSEF----EQLKYLVGWLDGF-CPGSRIVVTTRD-KQVLRKQ------GVKDEHVYEVERLNEDEGLE 353 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~----~~~~~l~~~~~~~-~~gsrIIiTTR~-~~v~~~~------~~~~~~~~~l~~L~~~ea~~ 353 (1170)
+++ .-+|||||++.. ...+.+...+... ..|..||+|+.. ...+..+ ....+..+++++.+.++..+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 347889999642 1122333222211 235567887753 2222111 01122578999999999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 354 LFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 354 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
++...+-.... .-.++....|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 99988743221 1224556677777777765443
No 145
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=4.9e-05 Score=58.22 Aligned_cols=39 Identities=36% Similarity=0.584 Sum_probs=19.5
Q ss_pred CCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc
Q 046888 787 SLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLP 825 (1170)
Q Consensus 787 ~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp 825 (1170)
+|++|+|++|+|+++|..++.|++|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555544555555555555555555443
No 146
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0017 Score=79.98 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=108.2
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC-CceEEEEechhhhhcCcCHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-EGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
|.....++|.+...+.|..++..+. -...+.++|..|+||||+|+.++..+-... +.. .....+.-...
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~---------~~~~Cg~C~~C 81 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP---------TPEPCGKCELC 81 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC---------CCCCCcccHHH
Confidence 3455679999999999999886542 235678999999999999999998764321 000 00000000111
Q ss_pred HHHHHHHhc-----C-cccCCCCChhHHHHH----HhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC-
Q 046888 260 KQVVSLLLG-----E-RLETGGPNIPAYALE----RLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRD- 326 (1170)
Q Consensus 260 ~~ll~~l~~-----~-~~~~~~~~l~~~l~~----~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~- 326 (1170)
+.+...... . ....+.+.+++.+.. -..+++-++|+|+++.. +..+.|+..+........+|++|.+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 111000000 0 000011111111110 01234567899999753 4567777666554445555554443
Q ss_pred hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 327 KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 327 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
..+..... .....+++..++.++..+.+.+.+-..+.. -..+.+..+++.++|.+..+..+
T Consensus 162 ~~llpTIr-SRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 162 QRVLPTII-SRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34433321 122678899999999888887766432211 11234678889999987644433
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.62 E-value=0.0035 Score=66.51 Aligned_cols=55 Identities=29% Similarity=0.474 Sum_probs=41.3
Q ss_pred CCCCCccccchhHHHHHHHHhh---cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 181 SDSSKGLVGLSSRIECIKSLLC---TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
+...+.++|.+.+.+.|.+-.. .+. ...-|.+||..|.|||++++++.+++..+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 3455789999999888764322 222 345678899999999999999999887653
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.59 E-value=0.0013 Score=78.85 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=91.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCc--eEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEG--KCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
..-+.|+|.+|+|||+||+++++++..+++. +.|+. . ..+..++...+... ....+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~--------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S----------EKFTNDFVNALRNN--------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHHcC--------cHHHHHHH
Confidence 4568999999999999999999998776533 33443 1 12223333333211 11223344
Q ss_pred hcCCCeEEEEeCCCCh----HHHHHHHcccCC-CCCCcEEEEEeCCh-hHHH----Hh--CCCCcceEeecCCCHhHHHH
Q 046888 286 LRRTKVFMVLDDVSEF----EQLKYLVGWLDG-FCPGSRIVVTTRDK-QVLR----KQ--GVKDEHVYEVERLNEDEGLE 353 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~~-~v~~----~~--~~~~~~~~~l~~L~~~ea~~ 353 (1170)
++ +.-+|||||++.. ...+.+...++. ...|..|||||... ..+. .. ....+.++++++.+.++..+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 44 3447889999542 112333332221 12355688877643 1111 11 11122679999999999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 354 LFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 354 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
++...+-... ..-.+++...|++.+.|..-.+.
T Consensus 288 il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 288 ILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHH
Confidence 9999874322 12234456777787887765443
No 149
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0063 Score=75.08 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=107.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc-----------------------cCC
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN-----------------------EFE 237 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----------------------~F~ 237 (1170)
|...+.++|-+...+.|...+..+. -...+.++|..|+||||+|+.++..+-. +|+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 3455689999999999999886432 2456789999999999999999886631 121
Q ss_pred ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCC
Q 046888 238 GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFC 315 (1170)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~ 315 (1170)
... +. .....+...+. +++.++... -..+++=++|+|+++.. +..+.|+..+....
T Consensus 92 ~~~-ld-----~~~~~~vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IHE-LD-----AASNNSVDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eEE-ec-----ccccCCHHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 111 10 11111122211 121211100 01234457899998754 44667776666555
Q ss_pred CCcEEEE-EeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 316 PGSRIVV-TTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 316 ~gsrIIi-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
..+.+|+ ||+...+...... ...++++++++.++....+...+-..+.. ...+.+..|++.++|..-
T Consensus 150 ~~tifIL~tt~~~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILS-RCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCeEEEEEeCCchhchHHHHh-hhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 5666655 4454455443321 23789999999999999888776433221 123355778888888764
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.002 Score=73.28 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=91.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCceEEEEechhhhhcCcCHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGKCFIENVREEIENGVGLVHLHKQVVSLL 266 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 266 (1170)
...+.++|+.|+||||+|+.++..+-.+ .+...++.... .....+++++. ++...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~--~~~~i~id~iR-~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE--ADKTIKVDQVR-ELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC--CCCCCCHHHHH-HHHHHH
Confidence 4568899999999999999999875321 11222222100 00112222222 122222
Q ss_pred hcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh-hHHHHhCCCCcceEee
Q 046888 267 LGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK-QVLRKQGVKDEHVYEV 343 (1170)
Q Consensus 267 ~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~l 343 (1170)
... ....+.|++ |+|+++. ......|+..+....+++.+|+||.+. .++..... ....+.+
T Consensus 99 ~~~--------------~~~~~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~ 162 (328)
T PRK05707 99 VQT--------------AQLGGRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQAC 162 (328)
T ss_pred hhc--------------cccCCCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeC
Confidence 110 111234555 6799975 455677776666555677777777665 44433321 2368999
Q ss_pred cCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 344 ERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 344 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
.+++.+++.+.+.... . .. ..+.+..++..++|.|+....+
T Consensus 163 ~~~~~~~~~~~L~~~~-~-~~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQAL-P-ES----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhc-c-cC----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999887653 1 11 1223456788999999755444
No 151
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.57 E-value=0.0036 Score=69.36 Aligned_cols=168 Identities=17% Similarity=0.261 Sum_probs=104.9
Q ss_pred CCCccccchhHHHHHHHHhhcCCCCe-EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHH
Q 046888 183 SSKGLVGLSSRIECIKSLLCTGLPDV-RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQ 261 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1170)
..+++.+|+.++..+..++...+..+ ..|.|+|.+|.|||.+.+++++.... ..+|+. +-+.+....+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n-----~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN-----CVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee-----hHHhccHHHHHHH
Confidence 45678999999999999996554433 44589999999999999999987632 357886 5668889999999
Q ss_pred HHHHHh-cCcccCCCCC----hhHHH---HH--Hhc--CCCeEEEEeCCCChHHHHH-----HHcccCCCCCCcEEEEEe
Q 046888 262 VVSLLL-GERLETGGPN----IPAYA---LE--RLR--RTKVFMVLDDVSEFEQLKY-----LVGWLDGFCPGSRIVVTT 324 (1170)
Q Consensus 262 ll~~l~-~~~~~~~~~~----l~~~l---~~--~L~--~kk~LlVLDdv~~~~~~~~-----l~~~~~~~~~gsrIIiTT 324 (1170)
|+.+.+ ..+.....+. +...+ .+ ... ++.++||||+++...+.++ +.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 999885 3332221111 11111 11 111 4689999999976544222 221110011112344444
Q ss_pred CCh---hHHHHhCCCCcceEeecCCCHhHHHHHHHHH
Q 046888 325 RDK---QVLRKQGVKDEHVYEVERLNEDEGLELFYKY 358 (1170)
Q Consensus 325 R~~---~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1170)
-.. .-....|.....++..+.-+.+|-.+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 322 1122245444457788889999999988654
No 152
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.57 E-value=7.5e-05 Score=81.04 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=58.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc-cCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCC-------CCh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN-EFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGG-------PNI 278 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-------~~l 278 (1170)
....++|.|.+|+|||||++.+++.+.. +|+..+|+..+.+ ...++..+++++...+......... ..+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e---r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE---RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC---CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3467999999999999999999997644 6899999874433 2367788888773322222111100 001
Q ss_pred hHHHHH-HhcCCCeEEEEeCCCCh
Q 046888 279 PAYALE-RLRRTKVFMVLDDVSEF 301 (1170)
Q Consensus 279 ~~~l~~-~L~~kk~LlVLDdv~~~ 301 (1170)
...... +-.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 111111 23478999999999654
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0021 Score=76.38 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=91.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCC--ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFE--GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
..-+.|+|.+|+|||+||+++++.+...++ .+.|+. . ..+..++...+... .+ ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----~------~~f~~~~~~~~~~~-------~~-~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----S------EKFLNDLVDSMKEG-------KL-NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----H------HHHHHHHHHHHhcc-------cH-HHHHHH
Confidence 345899999999999999999998766543 234443 1 22334443333211 11 122244
Q ss_pred hcCCCeEEEEeCCCCh---HH-HHHHHcccCC-CCCCcEEEEEeC-ChhHHHHh------CCCCcceEeecCCCHhHHHH
Q 046888 286 LRRTKVFMVLDDVSEF---EQ-LKYLVGWLDG-FCPGSRIVVTTR-DKQVLRKQ------GVKDEHVYEVERLNEDEGLE 353 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~---~~-~~~l~~~~~~-~~~gsrIIiTTR-~~~v~~~~------~~~~~~~~~l~~L~~~ea~~ 353 (1170)
.+.+.-+|++||++.. .. -+.+...+.. ...|..||+||. ...-+... ....+.++++++.+.++-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4444568999999642 11 1223222211 123457888874 43322211 01122578999999999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 046888 354 LFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 354 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
++.+.+-.... .-.+++...|++.+.|.--.+.
T Consensus 271 IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 271 IARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHhcCC--CCCHHHHHHHHhccccCHHHHH
Confidence 99888743221 1124456677777777644433
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.55 E-value=0.0022 Score=82.20 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC----
Q 046888 161 MLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---- 236 (1170)
Q Consensus 161 ~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---- 236 (1170)
..+++...++..+. .+...+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 168 ~~l~~~~~~L~~~~-----r~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 168 SALDQYTTDLTAQA-----REGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred hhHHHHhhhHHHHh-----cCCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 35566555555444 23445689999999999998886432 23467999999999999999999875432
Q ss_pred --CceEEEEechhhhhcC---cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH-------HH
Q 046888 237 --EGKCFIENVREEIENG---VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE-------QL 304 (1170)
Q Consensus 237 --~~~~~~~~~~~~~~~~---~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~-------~~ 304 (1170)
...+|..++....... .....-.++++.++. -.+++++|++|++.... +.
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~------------------~~~~~~ILfIDEih~l~~~g~~~~~~ 302 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK------------------ASPQPIILFIDEAHTLIGAGGQAGQG 302 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHH------------------hcCCCeEEEEeChHHhccCCCccccc
Confidence 1233433322201000 011112222222110 02468999999984431 11
Q ss_pred H---HHHcccCCCCCC-cEEEEEeCChhHHHHhCC-----CCcceEeecCCCHhHHHHHHHHHH
Q 046888 305 K---YLVGWLDGFCPG-SRIVVTTRDKQVLRKQGV-----KDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 305 ~---~l~~~~~~~~~g-srIIiTTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
+ .|...+ ..| -++|-||...+.-..... ...+.+.|++++.+++.+++....
T Consensus 303 d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 303 DAANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred cHHHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 1 233222 233 356655554322111100 122689999999999999975443
No 155
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=4.4e-06 Score=78.42 Aligned_cols=104 Identities=23% Similarity=0.351 Sum_probs=75.9
Q ss_pred ccEEEccCcCCcccCcc---ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCC
Q 046888 734 LKKINLGRTTVTELPSS---FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPS 810 (1170)
Q Consensus 734 L~~L~L~~~~i~~lp~~---l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~ 810 (1170)
+..++|+.+.+-.++.. +.....|+..+|++|.+. .+|...-..++.++.|+|++|.|+++|..+..++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-------~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~a 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-------KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPA 101 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-------hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHH
Confidence 34455555555544433 344556667788888765 45665455666788888988888888888888899
Q ss_pred CCEEECcCCCCccccccccCCCCCCEEEecCCCC
Q 046888 811 LEWLELRENNFESLPVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 811 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 844 (1170)
|+.|+++.|.|...|..+..|.+|-.|+..+|..
T Consensus 102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 9999999998888888888888888888877763
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0056 Score=72.59 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=84.3
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR 288 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~ 288 (1170)
.-+.|+|..|+|||+||+++++.+......++|+. ...+...+...+... . ...+.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-------~-~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-------E-MQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-------h-HHHHHHHcc-
Confidence 56889999999999999999998865544455554 122233333333211 1 112223333
Q ss_pred CCeEEEEeCCCCh----HHHHHHHcccCC-CCCCcEEEEEeCC-hhHHH----Hh--CCCCcceEeecCCCHhHHHHHHH
Q 046888 289 TKVFMVLDDVSEF----EQLKYLVGWLDG-FCPGSRIVVTTRD-KQVLR----KQ--GVKDEHVYEVERLNEDEGLELFY 356 (1170)
Q Consensus 289 kk~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~-~~v~~----~~--~~~~~~~~~l~~L~~~ea~~Lf~ 356 (1170)
..-+|++||+... ...+.+...++. ...|..||+||.. ...+. .. ....+.++++++++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3457888998542 112233322211 1245678888854 22111 11 11123689999999999999998
Q ss_pred HHHhccCCCChhHHHHHHHHHHHhCCC
Q 046888 357 KYAFRQNHRPEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 357 ~~af~~~~~~~~~~~~~~~i~~~~~Gl 383 (1170)
+.+-.... .-.++...-+++...|.
T Consensus 282 ~k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 88743221 11233444455555543
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0077 Score=68.13 Aligned_cols=192 Identities=12% Similarity=0.105 Sum_probs=108.5
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc---------------cCCceEEEEechhhh
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN---------------EFEGKCFIENVREEI 249 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~~ 249 (1170)
.+++|-+...+.+.+.+..+. -.....++|..|+||+++|.++++.+-. .++...|+..... .
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~-~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ-H 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc-c
Confidence 468999999999999886432 2468899999999999999999986522 2233344432110 0
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccC---CCCChhHHHHHHh-----cCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcE
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLET---GGPNIPAYALERL-----RRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSR 319 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~---~~~~l~~~l~~~L-----~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr 319 (1170)
+..... ...+...+...... ..+.++ .+.+.+ .+++-++|+|+++.. .....|+..+.... .+.
T Consensus 82 -~g~~~~---~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 -QGKLIT---ASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred -cccccc---hhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 000000 00001111000000 111111 122222 245667889998653 44566666554444 345
Q ss_pred EE-EEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 320 IV-VTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 320 II-iTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
+| +|++...++..... ....+++++++.++..+.+....... ..+ .....++..++|.|..+..+
T Consensus 156 fILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHHH
Confidence 55 45455455544422 23789999999999999998765211 111 11357889999999755443
No 158
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0087 Score=72.95 Aligned_cols=185 Identities=11% Similarity=0.111 Sum_probs=108.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-----CCc-eEEEEechhh------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-----FEG-KCFIENVREE------ 248 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~------ 248 (1170)
|.....++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.. +++ .|.. .++.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~--C~~i~~~~~~ 88 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS--CKSIDNDNSL 88 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH--HHHHHcCCCC
Confidence 4556789999999999999986432 24568899999999999999999875321 110 0000 0000
Q ss_pred ------hhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEE
Q 046888 249 ------IENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRI 320 (1170)
Q Consensus 249 ------~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI 320 (1170)
.....++..+. ++...+. ..-..+++-++|+|+++.. ++.+.|+..+....+...+
T Consensus 89 dv~~idgas~~~vddIr-~l~e~~~---------------~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vf 152 (563)
T PRK06647 89 DVIEIDGASNTSVQDVR-QIKEEIM---------------FPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVF 152 (563)
T ss_pred CeEEecCcccCCHHHHH-HHHHHHH---------------hchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEE
Confidence 00001111111 1111100 0012345667899999654 4567777776655556666
Q ss_pred EEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 321 VVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 321 IiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
|.+|.+ ..+..... .....++..+++.++..+.+...+...+.. -..+.+..|++.++|.+-.+
T Consensus 153 I~~tte~~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 153 IFATTEVHKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EEecCChHHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 655543 33433221 122679999999999988888876443322 12345567888899987543
No 159
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.003 Score=70.58 Aligned_cols=131 Identities=11% Similarity=0.141 Sum_probs=72.9
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhcc-C-CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNE-F-EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
..+.++|.+|.||||+|+.+++..... + ...-|+. ++ ... +.....+... ......+ +..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-----v~----~~~----l~~~~~g~~~----~~~~~~l-~~a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-----VT----RDD----LVGQYIGHTA----PKTKEVL-KKA 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-----ec----HHH----HHHHHhccch----HHHHHHH-HHc
Confidence 358899999999999999998865321 1 1111332 11 111 2222211110 0111111 111
Q ss_pred cCCCeEEEEeCCCC-----------hHHHHHHHcccCCCCCCcEEEEEeCChhHHHHh--------CCCCcceEeecCCC
Q 046888 287 RRTKVFMVLDDVSE-----------FEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ--------GVKDEHVYEVERLN 347 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~~~l~~L~ 347 (1170)
..-+|++|+++. .+..+.|...+.....+.+||+++....+.... ..+ ..++.++++
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~--~~i~F~~~t 197 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIA--NHVDFPDYT 197 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC--ceEEcCCcC
Confidence 234889999964 233455555554444556777777543332111 123 689999999
Q ss_pred HhHHHHHHHHHHhc
Q 046888 348 EDEGLELFYKYAFR 361 (1170)
Q Consensus 348 ~~ea~~Lf~~~af~ 361 (1170)
.+|..+++...+-+
T Consensus 198 ~~el~~I~~~~l~~ 211 (287)
T CHL00181 198 PEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888743
No 160
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.50 E-value=0.00011 Score=71.87 Aligned_cols=88 Identities=24% Similarity=0.429 Sum_probs=46.7
Q ss_pred ccEEeccccccccCchHHHHHHHHhcC-------CCcE----------EecC-CCCCCCcchHHHHHHhhccceEEEEec
Q 046888 10 YDVFLSFRGEDTRENFTSHLYAALCGK-------KIKT----------FIDE-DLNRGDEISPALLNAIEGSKISVIIFS 71 (1170)
Q Consensus 10 ~dvFis~~~~d~~~~f~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S 71 (1170)
|.|||||++.|.. ..+..|...+... .+.. +.+. +....+.|...|.++|.+|.++||+.+
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6799999999842 3677777777663 2211 1222 333455889999999999999999999
Q ss_pred cCcccCCCcHHHHHHHHHhhhcCCcEEEEEE
Q 046888 72 KDYASSKWCPNELVNILKCKNLNGQIVIPIY 102 (1170)
Q Consensus 72 ~~y~~s~wcl~El~~~~~~~~~~~~~v~pif 102 (1170)
++-..|.|+-.|+..+++ .+..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998876 334466664
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.50 E-value=0.0026 Score=68.92 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+..+.++..........+.++|.+|.|||+||.++++.+..+-..++++.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444444322223457899999999999999999998766555556653
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0069 Score=74.46 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=106.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc--CC----ceE-------------E
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE--FE----GKC-------------F 241 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~----~~~-------------~ 241 (1170)
|....++||.+...+.|...+..+ .-...+.++|..|+||||+|+.+++.+-.. .. +.| |
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 455678999999999999988643 223566899999999999999999875321 00 000 1
Q ss_pred EEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcE
Q 046888 242 IENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSR 319 (1170)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr 319 (1170)
+. +. .....++..+ +++...+.. .-...++-++|+|+++.. ...+.|+..+....+...
T Consensus 91 ~e-id--~~s~~~v~~i-r~l~~~~~~---------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 91 FE-ID--GASNTGVDDI-RELRENVKY---------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred ee-ee--ccCccCHHHH-HHHHHHHHh---------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 00 00 0011112221 112211110 001234457889999754 446666666655445666
Q ss_pred EEE-EeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 046888 320 IVV-TTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP-LALEVL 390 (1170)
Q Consensus 320 IIi-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~l 390 (1170)
+|+ ||....+..... .....++.++++.++..+.+...+-..+.. -..+....+++.++|.. .|+..+
T Consensus 152 fIl~t~~~~kl~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 152 FIFATTEPHKVPITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEeCChhhhhHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665 444444443321 122678999999999888887765332211 12344567888888865 444444
No 163
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=0.00011 Score=56.33 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=34.4
Q ss_pred CCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCC
Q 046888 809 PSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 809 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
++|++|+|++|+|+.+|..+.+|++|+.|+|++|+ +++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57999999999999999889999999999999997 455554
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=97.47 E-value=0.0016 Score=80.21 Aligned_cols=173 Identities=17% Similarity=0.248 Sum_probs=98.1
Q ss_pred CCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 183 SSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
..++++|.+...+++.+.+.. +..-.+-|.++|++|.|||+||++++.+.... |+. ++
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-----is-- 248 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-----IS-- 248 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-----cc--
Confidence 345788998888877766531 11224569999999999999999999865322 221 10
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------------HHHHHHcccCCC--
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------------QLKYLVGWLDGF-- 314 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------------~~~~l~~~~~~~-- 314 (1170)
...+.... .+ .+...+...+.......+.+|++|+++... .+..++..++.+
T Consensus 249 --~s~f~~~~----~g----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 249 --GSEFVEMF----VG----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHHHHHh----hh----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 00011000 00 011122223334445678999999995431 134444444332
Q ss_pred CCCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCC
Q 046888 315 CPGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEG 382 (1170)
Q Consensus 315 ~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G 382 (1170)
..+-.||.||.....+... ..+ ..+.++..+.++..+++..++-..... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd--~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFD--RQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCc--eEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 2344666666654433321 233 678999999999999999887432111 12233556666666
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0015 Score=71.80 Aligned_cols=171 Identities=23% Similarity=0.352 Sum_probs=101.3
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
..+=|.+.++++|.+.... +-+..+-|.++|++|.|||-||++|+++.... |+..+..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH------
Confidence 3456788888888876542 22446779999999999999999999986543 4442221
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCCCC
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~~g 317 (1170)
. +.....++ +...+++...-.-.+.+..|.+|.++.. ..+-.|+..++.|.+.
T Consensus 220 ---E----lVqKYiGE----GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ---E----LVQKYIGE----GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ---H----HHHHHhcc----chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1 11111111 1111221111112356889999988441 1144566677776553
Q ss_pred --cEEEEEeCChhHH-----HHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 318 --SRIVVTTRDKQVL-----RKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 318 --srIIiTTR~~~v~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
-+||..|--.+++ +--..+ ..++++.-+.+.-.++|.-|+-+.... .-+++. +++.+.|.
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~D--RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~ 356 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFD--RKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGF 356 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCccc--ceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCC
Confidence 4788777544333 222345 789999777777788998888554432 234443 45555554
No 166
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.43 E-value=0.00019 Score=81.63 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=61.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCC-------Ch
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGP-------NI 278 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-------~l 278 (1170)
.-+.++|+|.+|.|||||++.+++.+... |+..+|+..+++ ....+..+++.++..+.......... .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34679999999999999999999987655 999999985433 23578888888865443332222110 01
Q ss_pred hHHH-HHHhcCCCeEEEEeCCCCh
Q 046888 279 PAYA-LERLRRTKVFMVLDDVSEF 301 (1170)
Q Consensus 279 ~~~l-~~~L~~kk~LlVLDdv~~~ 301 (1170)
.+.. ..+-.+++++|++|.+...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 1111 1123579999999999654
No 167
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0038 Score=76.35 Aligned_cols=192 Identities=14% Similarity=0.094 Sum_probs=105.7
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
.|.....++|.+...+.|...+..+. -.+.+.++|..|+||||+|+.++..+-..-.. .....+.-...
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~----------~~~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP----------DGEPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----------CCCCCCccHHH
Confidence 34566789999999999999986542 24567789999999999999998865321000 00000000000
Q ss_pred HHHHHHHhcC------cccCCCCChhHHHHHH-----hcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEE-EeC
Q 046888 260 KQVVSLLLGE------RLETGGPNIPAYALER-----LRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVV-TTR 325 (1170)
Q Consensus 260 ~~ll~~l~~~------~~~~~~~~l~~~l~~~-----L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi-TTR 325 (1170)
..+....... ....+.+.+++ +.+. ..+++-++|+|+++.. .....|+..+........+|+ ||.
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 0000000000 00001111111 1111 1345667899999754 456777766654444445554 444
Q ss_pred ChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 326 DKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 326 ~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
...+..... .....++..+++.++..+.+...+-..+..- ..+.+..+++.++|.+.-
T Consensus 159 ~~ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 159 PHKIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred hhhCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 443333221 1226789999999999888887764332211 134466778888887753
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.39 E-value=0.0017 Score=83.56 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=92.8
Q ss_pred HHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-C---
Q 046888 161 MLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-F--- 236 (1170)
Q Consensus 161 ~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F--- 236 (1170)
..+++...++..+- .....+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++... -
T Consensus 160 ~~l~~~~~~l~~~a-----~~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 160 PTLEEFGTNLTKEA-----IDGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred hHHHHHHHHHHHHH-----HcCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 35566655554443 11223468999999999999996432 2345799999999999999999987532 1
Q ss_pred --CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------HH
Q 046888 237 --EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------QL 304 (1170)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------~~ 304 (1170)
...+|..+...........-.. ...++..+.+.-..++++|++|+++..- ..
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~----------------e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a 296 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEF----------------EERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA 296 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHH----------------HHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH
Confidence 2344544322201000000000 0011111212223568999999984211 11
Q ss_pred HHHHcccCCCCCC-cEEEEEeCChhHHHHhC-----CCCcceEeecCCCHhHHHHHHHHH
Q 046888 305 KYLVGWLDGFCPG-SRIVVTTRDKQVLRKQG-----VKDEHVYEVERLNEDEGLELFYKY 358 (1170)
Q Consensus 305 ~~l~~~~~~~~~g-srIIiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1170)
.-|...+ ..| -++|.+|.......... ......++++..+.++...++...
T Consensus 297 ~lLkp~l---~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 297 NILKPAL---ARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhHHHH---hCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2222222 122 35555555443211110 112257889999999988887653
No 169
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.014 Score=70.59 Aligned_cols=152 Identities=12% Similarity=0.149 Sum_probs=86.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCC--ceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFE--GKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
..+.|+|..|.|||.|+.++++.....+. .+.|+. ...+..++...+... ....+.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 35899999999999999999998765432 234543 122333333332211 011222444
Q ss_pred cCCCeEEEEeCCCCh---HH-HHHHHcccCC-CCCCcEEEEEeCCh---------hHHHHhCCCCcceEeecCCCHhHHH
Q 046888 287 RRTKVFMVLDDVSEF---EQ-LKYLVGWLDG-FCPGSRIVVTTRDK---------QVLRKQGVKDEHVYEVERLNEDEGL 352 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~~---~~-~~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~ 352 (1170)
++ -=+|||||++.. +. -+.|...++. ...|..|||||+.. .+...+. .+-+++|+..+.+...
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~--~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFE--WGLITDVQPPELETRI 452 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhh--cCceEEcCCCCHHHHH
Confidence 43 347888999542 11 1223322222 13456788888753 1122222 2378999999999999
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHhCCCh
Q 046888 353 ELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP 384 (1170)
Q Consensus 353 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1170)
+++.+++-...- .--+++..-|++.+.+..
T Consensus 453 aIL~kka~~r~l--~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 453 AILRKKAVQEQL--NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHhcCC--CCCHHHHHHHHHhccCCH
Confidence 999988743221 112344555555555543
No 170
>PRK12377 putative replication protein; Provisional
Probab=97.35 E-value=0.0049 Score=66.94 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=30.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...+.|+|.+|+|||.||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999998876655566664
No 171
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.30 E-value=0.0025 Score=65.49 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
|....++||-+..++.+.-.-. +++.+-+.|.||+|+||||-+..+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4455678999999988876653 45678899999999999999888888653
No 172
>PRK08116 hypothetical protein; Validated
Probab=97.29 E-value=0.0019 Score=71.33 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=57.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR 288 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~ 288 (1170)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+........ ..-...+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC
Confidence 46899999999999999999998876644455553 1223333332221111 1111223355554
Q ss_pred CCeEEEEeCCCC--h--HHHHHHHcccCC-CCCCcEEEEEeCCh
Q 046888 289 TKVFMVLDDVSE--F--EQLKYLVGWLDG-FCPGSRIVVTTRDK 327 (1170)
Q Consensus 289 kk~LlVLDdv~~--~--~~~~~l~~~~~~-~~~gsrIIiTTR~~ 327 (1170)
-. ||||||+.. . ...+.+...++. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 789999932 1 122333333322 23566789998643
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.27 E-value=0.0031 Score=76.68 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=94.8
Q ss_pred CCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 183 SSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
.-++++|.+...+++.+++.. +....+-+.++|++|.|||+||++++......| +. ++
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-----i~-- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-----IS-- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-----cc--
Confidence 345788988887777665431 122345688999999999999999998653322 21 10
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCC-
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFC- 315 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~- 315 (1170)
...+... ..+. ....+...+.......+.+|+||+++.. ..+..++..++...
T Consensus 121 --~~~~~~~----~~g~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 --GSDFVEM----FVGV----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHHH----Hhcc----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 0011110 0000 1111222222333456789999999542 11233444443322
Q ss_pred -CCcEEEEEeCChhHHH-----HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC
Q 046888 316 -PGSRIVVTTRDKQVLR-----KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 316 -~gsrIIiTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 383 (1170)
.+-.||.||.....+. .-..+ ..++++..+.++..++|..+.-+.....+ .....+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd--~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFD--RQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcce--EEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 2334556665443221 11234 67899999999999999887743222111 1124667777663
No 174
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.0076 Score=68.59 Aligned_cols=218 Identities=15% Similarity=0.222 Sum_probs=127.8
Q ss_pred HHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhc--CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCc--eEE
Q 046888 166 IVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCT--GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEG--KCF 241 (1170)
Q Consensus 166 iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~ 241 (1170)
+-......+ .....+..++||+.++..+.+++.. +.+..+-+-|.|-+|.|||.+...++.+....... .++
T Consensus 135 ~~~~~~~~l----~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~ 210 (529)
T KOG2227|consen 135 ISEQRSESL----LNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVY 210 (529)
T ss_pred HHHHHHHHH----HhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEE
Confidence 344444444 2345667899999999999999864 34556788999999999999999999876554433 355
Q ss_pred EEechhhhhcCcCHHHHHHHHHHHHhcCcccCCC-CChhHHHHHHhcC--CCeEEEEeCCCChHH--HHHHHcccCCC-C
Q 046888 242 IENVREEIENGVGLVHLHKQVVSLLLGERLETGG-PNIPAYALERLRR--TKVFMVLDDVSEFEQ--LKYLVGWLDGF-C 315 (1170)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-~~l~~~l~~~L~~--kk~LlVLDdv~~~~~--~~~l~~~~~~~-~ 315 (1170)
+. ...-.....+...+...+.......+. ...+..+.....+ .-+|+|+|..|.... -..+...+.|. -
T Consensus 211 in-----c~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l 285 (529)
T KOG2227|consen 211 IN-----CTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL 285 (529)
T ss_pred Ee-----eccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC
Confidence 54 222244567777777777433332222 2223333333433 358899999865432 12222223332 3
Q ss_pred CCcEEEEEeCCh------hHHHHh----CCCCcceEeecCCCHhHHHHHHHHHHhccCCC---ChhHHHHHHHHHHHhCC
Q 046888 316 PGSRIVVTTRDK------QVLRKQ----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHR---PEHLTVLSKKAVRYAEG 382 (1170)
Q Consensus 316 ~gsrIIiTTR~~------~v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~---~~~~~~~~~~i~~~~~G 382 (1170)
+++|+|+.---. ..+... +.. ...+.-++-+.++-.++|..+.-..... +...+-.|++++...|.
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~-P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIK-PKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCC-CceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 677766532211 111111 111 2678889999999999999887332211 12344445555555555
Q ss_pred ChhHHHHHHHH
Q 046888 383 NPLALEVLGSS 393 (1170)
Q Consensus 383 lPLAl~~lg~~ 393 (1170)
+=-|+.+.-+.
T Consensus 365 lRkaLdv~R~a 375 (529)
T KOG2227|consen 365 LRKALDVCRRA 375 (529)
T ss_pred HHHHHHHHHHH
Confidence 55565555443
No 175
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.24 E-value=0.0073 Score=66.25 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcC-CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCc------eEEEEechhhhhcCcCHHHHHHHHHHH
Q 046888 193 RIECIKSLLCTG-LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEG------KCFIENVREEIENGVGLVHLHKQVVSL 265 (1170)
Q Consensus 193 ~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1170)
.++.|+.++... ....+-+.|+|.+|+|||++++++...+...++. ++.+. .....+...+...|+..
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCChHHHHHHHHHH
Confidence 355666666533 3445669999999999999999999876544432 33333 56678889999999999
Q ss_pred HhcCcccC-CCCChhHHHHHHhcC-CCeEEEEeCCCCh-----HHHHHHHcccCCCC---CCcEEEEEeCChhHHHHhCC
Q 046888 266 LLGERLET-GGPNIPAYALERLRR-TKVFMVLDDVSEF-----EQLKYLVGWLDGFC---PGSRIVVTTRDKQVLRKQGV 335 (1170)
Q Consensus 266 l~~~~~~~-~~~~l~~~l~~~L~~-kk~LlVLDdv~~~-----~~~~~l~~~~~~~~---~gsrIIiTTR~~~v~~~~~~ 335 (1170)
++...... ....+.....+.++. +-=+||+|.+.+. .+-..++..+...+ .-+-|.|-|++-.-+ ...
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a--l~~ 197 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA--LRT 197 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH--hcc
Confidence 98876544 333344444455554 3347899999652 11222222222111 233455555543111 111
Q ss_pred C-----CcceEeecCCCHhHH-HHHHHHHHhc--cCC-CChhHHHHHHHHHHHhCCChhHHH
Q 046888 336 K-----DEHVYEVERLNEDEG-LELFYKYAFR--QNH-RPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 336 ~-----~~~~~~l~~L~~~ea-~~Lf~~~af~--~~~-~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
+ ....+.++....++- .+|+...... -.. ..-...++++.|...++|+.=-+.
T Consensus 198 D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 198 DPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred CHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1 124667777766544 4444332211 011 122346788999999999864433
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.24 E-value=0.002 Score=80.80 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 162 LVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 162 ~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+++...++.... .-...+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a-----~~g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLA-----RVGGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHH-----HcCCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 5555555544332 11223469999999999999887532 23456899999999999999998764
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0042 Score=79.87 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 161 MLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 161 ~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..+++...++..+. .+...+.++||+.++.++.+.|+... ..-+.++|.+|+|||+||+.++.++..
T Consensus 159 ~~l~~~~~~l~~~~-----r~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 159 QALKKYTIDLTERA-----EQGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred hHHHHHhhhHHHHH-----hcCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 34555555554444 23344579999999999999886532 335669999999999999999998754
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.23 E-value=0.0022 Score=62.63 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEecCCChHHHHHHHHHHHHh
Q 046888 211 VGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
|.|+|.+|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.19 E-value=0.0038 Score=80.63 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 162 LVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 162 ~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.+++...++..+. .+...+.+|||+.++.++...|.... ..-+.++|.+|+|||++|+.+++++...
T Consensus 155 ~l~~~~~~l~~~~-----~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 155 ALEKYARDLTERA-----REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred HHHHHhhhHHHHh-----hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 4555544444443 23344569999999999999886543 3445689999999999999999987553
No 180
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=6.8e-05 Score=79.42 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=115.3
Q ss_pred CCCCCeeEEEecCCCCCCCCCCC----CCCcCccccCCCCCcccccccc-cccccceeecCCCCCCCccCC--CCCCCCc
Q 046888 588 YLPEKLRYLHLHKYPLRTLPSNF----KPKNLIELNLPFSKVVQIWEGK-KKAFKLKSINLSHSQYLIRIP--DPSEAPN 660 (1170)
Q Consensus 588 ~l~~~Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~ 660 (1170)
.....++.|+|.+|.+......+ +++.|++|+|++|.+...-... -.+.+|+.|-|.++.+.-... .+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34457888999999887665544 7888999999998776443333 356789999988877533222 2567888
Q ss_pred cccccccC--CcccccCCCccccccccc---ccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhcccc
Q 046888 661 LERINLWN--CTHLNLCDTAIEEVPSSV---ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLK 735 (1170)
Q Consensus 661 L~~L~L~~--c~~L~l~~n~i~~lp~~i---~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~ 735 (1170)
++.|.++. .+.+++..+.++.....+ ..++++..+.++-|+....+| ++..+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-------nv~sv~--------------- 205 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-------NVNSVF--------------- 205 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-------cchhee---------------
Confidence 88887764 456666666666544322 223333333333333222222 222232
Q ss_pred EEEccCcCCcccC--ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-----C--cccC
Q 046888 736 KINLGRTTVTELP--SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-----P--EEIG 806 (1170)
Q Consensus 736 ~L~L~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-----p--~~l~ 806 (1170)
+..+.++... .....++.+..|+|+.+.+.... ++.. +.++++|..|.++++.+.+- + --++
T Consensus 206 ---v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa----svD~--Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 206 ---VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA----SVDA--LNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred ---eecCcccchhhcccCCCCCcchhhhhcccccccHH----HHHH--HcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 3333333221 23344555556677766664321 2222 66777788888888777641 1 1256
Q ss_pred CCCCCCEEECc
Q 046888 807 CLPSLEWLELR 817 (1170)
Q Consensus 807 ~l~~L~~L~L~ 817 (1170)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 67788877644
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.12 E-value=0.00097 Score=65.66 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=27.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
+.+.|+|.+|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999998776554334444
No 182
>PRK08181 transposase; Validated
Probab=97.11 E-value=0.0013 Score=72.25 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=28.3
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+-+.++|.+|.|||.||.++.+....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998765544556654
No 183
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.0053 Score=71.95 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcc
Q 046888 192 SRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERL 271 (1170)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 271 (1170)
.-+.++.+.+... ..++.|.|+-++||||+++.+....... .+++..... ......+ .+.+....
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~-~~~~~~l----~d~~~~~~---- 88 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDL-RLDRIEL----LDLLRAYI---- 88 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecch-hcchhhH----HHHHHHHH----
Confidence 3344444444322 1299999999999999997766655443 455542111 1111111 11111110
Q ss_pred cCCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHh----CCCCcceEeecCCC
Q 046888 272 ETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ----GVKDEHVYEVERLN 347 (1170)
Q Consensus 272 ~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~~~~~~~~~l~~L~ 347 (1170)
+.-..++..++||.|.....|+..+..+-..++. +|+||+-+..+...- -......+++-||+
T Consensus 89 ------------~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 89 ------------ELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ------------HhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 1111178899999999999998887777666666 899988776543221 11224789999999
Q ss_pred HhHHHHHH
Q 046888 348 EDEGLELF 355 (1170)
Q Consensus 348 ~~ea~~Lf 355 (1170)
..|-..+-
T Consensus 156 F~Efl~~~ 163 (398)
T COG1373 156 FREFLKLK 163 (398)
T ss_pred HHHHHhhc
Confidence 99987754
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.11 E-value=0.003 Score=80.53 Aligned_cols=174 Identities=18% Similarity=0.186 Sum_probs=92.8
Q ss_pred CCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 184 SKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
.+++.|++..++++.+++.. +-...+.|.++|.+|.|||+||+++++.....| +.+. ..+..+..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 34688999999998887642 113346789999999999999999998765432 2221 11101111
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCC-CCCc
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGF-CPGS 318 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~-~~gs 318 (1170)
.+.. ...+...+.......+.+|+||+++.. .....|...++.. ..+.
T Consensus 253 ~g~~------------------~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 253 YGES------------------EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ccHH------------------HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1100 001111122233456678999998542 1123344333322 2333
Q ss_pred EEEE-EeCChh-HHHHh----CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh
Q 046888 319 RIVV-TTRDKQ-VLRKQ----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP 384 (1170)
Q Consensus 319 rIIi-TTR~~~-v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1170)
.++| ||.... +-... ..+ ..++++..+.++..+++..+.-+..... ......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd--~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFD--REIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhcc--EEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 4444 444332 11111 123 5688888899998888886542211111 112345666666653
No 185
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.05 E-value=0.0065 Score=72.55 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=85.0
Q ss_pred CCccccchhHHHHHHHHhh--------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCH
Q 046888 184 SKGLVGLSSRIECIKSLLC--------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 255 (1170)
..++.|.+...+.+.+... .+-...+-|.++|++|.|||.+|+++++.+.-.| +..+.....+...+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 3567888776666654221 1223457799999999999999999998764332 211111100000110
Q ss_pred HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH--------------HHHHHHcccCCCCCCcEEE
Q 046888 256 VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE--------------QLKYLVGWLDGFCPGSRIV 321 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~--------------~~~~l~~~~~~~~~gsrII 321 (1170)
. ...+.+.+...-...+.+|++|+++..- .+..++..+.....+--||
T Consensus 303 s------------------e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 303 S------------------ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred H------------------HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 0 0011111112223468999999986421 0222332222223334466
Q ss_pred EEeCChhHH-----HHhCCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 322 VTTRDKQVL-----RKQGVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 322 iTTR~~~v~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
.||.....+ +.-..+ ..+.++.-+.++..++|..+..+
T Consensus 365 aTTN~~~~Ld~allR~GRFD--~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFD--EIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EecCChhhCCHHHhCCCcCC--eEEEeCCcCHHHHHHHHHHHHhh
Confidence 677654321 212344 78899999999999999988744
No 186
>PRK09183 transposase/IS protein; Provisional
Probab=97.02 E-value=0.0011 Score=72.82 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=26.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
...+.|+|.+|+|||+||.+++.....+-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35688999999999999999988754433334444
No 187
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.00 E-value=0.0011 Score=68.33 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=26.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.+-+.|+|.+|+|||.||.++.+++..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456999999999999999999997665444566664
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.01 Score=72.82 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=43.8
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCC---CCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGL---PDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|...++++|-+..++++..++.... ...+++.|+|++|.||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45566789999999999999886432 3457899999999999999999998653
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.99 E-value=0.033 Score=72.09 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=40.3
Q ss_pred CCccccchhHHHHHHHHhhcCC------C-CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 184 SKGLVGLSSRIECIKSLLCTGL------P-DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...++|.+..++.+...+.... + ...++.++|++|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3468999999999988775321 1 14568899999999999999999876443
No 190
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.019 Score=66.03 Aligned_cols=163 Identities=19% Similarity=0.193 Sum_probs=91.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
....+.|||..|.|||-|++++.+......+...++. + ........+...+... .. +..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y-----~----~se~f~~~~v~a~~~~----~~----~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY-----L----TSEDFTNDFVKALRDN----EM----EKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe-----c----cHHHHHHHHHHHHHhh----hH----HHHHHhh
Confidence 3567999999999999999999998877766333332 1 1122223333332221 11 1122333
Q ss_pred cCCCeEEEEeCCCCh----HHHHHHHcccCC-CCCCcEEEEEeCCh---------hHHHHhCCCCcceEeecCCCHhHHH
Q 046888 287 RRTKVFMVLDDVSEF----EQLKYLVGWLDG-FCPGSRIVVTTRDK---------QVLRKQGVKDEHVYEVERLNEDEGL 352 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~ 352 (1170)
.-=++++||++-. ..-+.+...++. ...|..||+|++.. .+...+.+ +-++++.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~--Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW--GLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc--eeEEeeCCCCHHHHH
Confidence 3337889999442 112333333322 23444899998543 12222333 378999999999999
Q ss_pred HHHHHHHhccC--CCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 353 ELFYKYAFRQN--HRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 353 ~Lf~~~af~~~--~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
.++.+.+.... -+++...-++.++-+-..-+.-|+..+
T Consensus 251 aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 251 AILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99998764322 233334444444444333344444433
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.97 E-value=0.0032 Score=73.03 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc--cCCceEEEEechhhhhcCcCHHHHHHH
Q 046888 184 SKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN--EFEGKCFIENVREEIENGVGLVHLHKQ 261 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1170)
..++++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .+..+.|+. +.+.++.......
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-----FHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-----FHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe-----ecccccHHHHhcc
Confidence 34577888888888888753 356888999999999999999997743 345555655 4444443333221
Q ss_pred HHHHHhcCcccC--CCCChhHHHHHHhc--CCCeEEEEeCCCChH
Q 046888 262 VVSLLLGERLET--GGPNIPAYALERLR--RTKVFMVLDDVSEFE 302 (1170)
Q Consensus 262 ll~~l~~~~~~~--~~~~l~~~l~~~L~--~kk~LlVLDdv~~~~ 302 (1170)
+ ....... ......+.+..... ++++++|+|+++...
T Consensus 245 ~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 245 Y----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred c----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1 0000000 11122222222222 468999999997643
No 192
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.036 Score=58.73 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=102.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC---CCCChhHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET---GGPNIPAYA 282 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~l~~~l 282 (1170)
++.+++.++|.-|.|||.++|++...+...=-..+.+ -....+...+...+..++....... ....+...+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i------~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI------DKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe------cCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 4556999999999999999996555443221122222 2334556677788888877632221 111222222
Q ss_pred HHHh-cCCC-eEEEEeCCCCh--HHHHHHH--cccC-CCCCCcEEEEEeCCh-------hHHHHhCCCCcce-EeecCCC
Q 046888 283 LERL-RRTK-VFMVLDDVSEF--EQLKYLV--GWLD-GFCPGSRIVVTTRDK-------QVLRKQGVKDEHV-YEVERLN 347 (1170)
Q Consensus 283 ~~~L-~~kk-~LlVLDdv~~~--~~~~~l~--~~~~-~~~~gsrIIiTTR~~-------~v~~~~~~~~~~~-~~l~~L~ 347 (1170)
.+.. ++++ +.+++|+..+. ++++.+. ..+. ....--+|+..-..+ .+....+-. ..+ |+++|++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R-~~ir~~l~P~~ 201 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR-IDIRIELPPLT 201 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe-EEEEEecCCcC
Confidence 2222 4566 99999998543 3344443 2221 111112344433222 112222211 134 9999999
Q ss_pred HhHHHHHHHHHHhccCCCChh-HHHHHHHHHHHhCCChhHHHHHHH
Q 046888 348 EDEGLELFYKYAFRQNHRPEH-LTVLSKKAVRYAEGNPLALEVLGS 392 (1170)
Q Consensus 348 ~~ea~~Lf~~~af~~~~~~~~-~~~~~~~i~~~~~GlPLAl~~lg~ 392 (1170)
.++...++.++.-+...+.+- -.+....|.....|.|.++..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999998887544333332 234556778888999999887654
No 193
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.95 E-value=0.0013 Score=66.63 Aligned_cols=62 Identities=31% Similarity=0.365 Sum_probs=33.9
Q ss_pred cCCCCCCCEEeCCCCCCCCCCcccCC-CCCCCEEECcCCCCcccc--ccccCCCCCCEEEecCCC
Q 046888 782 LSGLFSLNWLNLNNCALTAIPEEIGC-LPSLEWLELRENNFESLP--VSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 782 l~~l~~L~~L~L~~~~l~~ip~~l~~-l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~ 843 (1170)
+..++.|..|.|.+|+|+.+-+.+.. +++|+.|.|.+|+|..+. ..+..+|+|++|.+-+|+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 44555566666666666655444332 445666666666555442 234555666666666665
No 194
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.94 E-value=0.16 Score=58.38 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=64.7
Q ss_pred CCeEEEEeCCCChH-----HHHHHH---cccCCCCCCcEEEEEeCChhHHH----HhCCCCcceEeecCCCHhHHHHHHH
Q 046888 289 TKVFMVLDDVSEFE-----QLKYLV---GWLDGFCPGSRIVVTTRDKQVLR----KQGVKDEHVYEVERLNEDEGLELFY 356 (1170)
Q Consensus 289 kk~LlVLDdv~~~~-----~~~~l~---~~~~~~~~gsrIIiTTR~~~v~~----~~~~~~~~~~~l~~L~~~ea~~Lf~ 356 (1170)
+|=+||+||+.... -++.|. ..+- ..+-.+||++|-+....+ .+.....+.+.+.-.+.+.|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 46789999984321 122222 1111 124458999888764433 3322234678999999999999999
Q ss_pred HHHhccCCC-------------C-----hhHHHHHHHHHHHhCCChhHHHHHHHHhcC
Q 046888 357 KYAFRQNHR-------------P-----EHLTVLSKKAVRYAEGNPLALEVLGSSLQQ 396 (1170)
Q Consensus 357 ~~af~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~ 396 (1170)
.+.-..... . .....-....++.+||==.=|..+++.++.
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 987432110 0 122333456677778877777777777764
No 195
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.0074 Score=77.06 Aligned_cols=151 Identities=18% Similarity=0.259 Sum_probs=87.0
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
..+.|.+...++|.+.+.. +....+-|.++|++|.|||++|+++++.....| +.....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~------ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE------ 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH------
Confidence 5678888888888776541 112345689999999999999999999765433 1111111
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--------------HHHHHHHcccCCC--CCC
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--------------EQLKYLVGWLDGF--CPG 317 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--------------~~~~~l~~~~~~~--~~g 317 (1170)
++....++ ....+...+...-...+.+|++|+++.. ..+..++..++.. ..+
T Consensus 523 --------l~~~~vGe----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 523 --------ILSKWVGE----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred --------HhhcccCc----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11100000 0011121122222456789999998532 1234455444432 233
Q ss_pred cEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 318 SRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 318 srIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
--||.||.....+... ..+ ..+.++..+.++..++|..+.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd--~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFD--RLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccc--eEEEeCCcCHHHHHHHHHHHh
Confidence 4456666554433221 233 788999999999999998776
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.93 E-value=0.018 Score=63.76 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+-|.|.|.+|+|||++|++++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999998653
No 197
>PRK06526 transposase; Provisional
Probab=96.91 E-value=0.0012 Score=72.25 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=26.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCF 241 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1170)
.+-+.|+|.+|+|||+||.++.++...+-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568999999999999999999876544333344
No 198
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.027 Score=63.51 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=62.7
Q ss_pred CCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCC
Q 046888 288 RTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNH 364 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 364 (1170)
+++=++|+|+++.. .....|+..+....+++.+|++|.. ..++..... ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C
Confidence 34557889999754 4466677666665677777776664 344444322 23688999999999998886531 1
Q ss_pred CChhHHHHHHHHHHHhCCChhHHHHHH
Q 046888 365 RPEHLTVLSKKAVRYAEGNPLALEVLG 391 (1170)
Q Consensus 365 ~~~~~~~~~~~i~~~~~GlPLAl~~lg 391 (1170)
. ...+..++..++|.|+....+.
T Consensus 187 ~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1225677999999998665443
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.018 Score=65.92 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=86.2
Q ss_pred cccc-chhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCceEEEE
Q 046888 186 GLVG-LSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGKCFIE 243 (1170)
Q Consensus 186 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~ 243 (1170)
.++| -+..++.+...+..+ .-.....++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 556667777777533 224567899999999999999998865321 11122221
Q ss_pred echhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEE
Q 046888 244 NVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIV 321 (1170)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrII 321 (1170)
. ......+..+. ++...+.. .-..+++=++|+|+++.. +....|+..+....+++.+|
T Consensus 85 ~----~~~~i~id~ir-~l~~~~~~---------------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 P----DGQSIKKDQIR-YLKEEFSK---------------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred c----ccccCCHHHHH-HHHHHHhh---------------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 0 00011111111 11111100 002234456888998653 44667777776666777777
Q ss_pred EEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHH
Q 046888 322 VTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYK 357 (1170)
Q Consensus 322 iTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 357 (1170)
++|.+. .+...... ....+++++++.++..+.+..
T Consensus 145 l~t~~~~~ll~TIrS-Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQILPTILS-RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChHhCcHHHHh-hceeeeCCCCCHHHHHHHHHH
Confidence 777654 33333221 237899999999999888764
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.014 Score=67.11 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=80.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
.....+.+.|++|.|||+||..++. ...|+.+-.+. ...--++..-.+ ...+.....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-----pe~miG~sEsaK--------------c~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-----PEDMIGLSESAK--------------CAHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-----hHHccCccHHHH--------------HHHHHHHHHHh
Confidence 3466788999999999999999875 46788655443 111222221111 01122222344
Q ss_pred hcCCCeEEEEeCCCChHH------------HHHHHccc---CCCCCCcEEEEEeCChhHHHHhCCCC--cceEeecCCCH
Q 046888 286 LRRTKVFMVLDDVSEFEQ------------LKYLVGWL---DGFCPGSRIVVTTRDKQVLRKQGVKD--EHVYEVERLNE 348 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~~~------------~~~l~~~~---~~~~~gsrIIiTTR~~~v~~~~~~~~--~~~~~l~~L~~ 348 (1170)
-+..=-.||+||++..-+ ++.|...+ +..++.--|+-||..+.++..++.-. ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 455667899999955322 34444333 33333334666888889998887531 25789999988
Q ss_pred -hHHHHHHHHH
Q 046888 349 -DEGLELFYKY 358 (1170)
Q Consensus 349 -~ea~~Lf~~~ 358 (1170)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777776654
No 201
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.85 E-value=0.089 Score=67.11 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHhhcC-----C-C-CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 185 KGLVGLSSRIECIKSLLCTG-----L-P-DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~-----~-~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+.++|.+..++.+...+... . + ...++.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46789999999888776531 1 1 234678999999999999999998773
No 202
>PRK10536 hypothetical protein; Provisional
Probab=96.84 E-value=0.0044 Score=66.58 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=73.9
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH-H-hccCCceEEEEechhhhhc-----CcCHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ-I-SNEFEGKCFIENVREEIEN-----GVGLVH 257 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~~~~-----~~~~~~ 257 (1170)
..+.++......+..++.. ..+|.+.|.+|.|||+||.+++.+ + ...|...+.....-+ ..+ +.++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~-~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ-ADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC-chhhhCcCCCCHHH
Confidence 4567788888887777743 348999999999999999998874 4 444554433322111 111 011111
Q ss_pred ----HHH---HHHHHHhcCccc-----CCCCChhHHHHHHhcCCCe---EEEEeCCCCh--HHHHHHHcccCCCCCCcEE
Q 046888 258 ----LHK---QVVSLLLGERLE-----TGGPNIPAYALERLRRTKV---FMVLDDVSEF--EQLKYLVGWLDGFCPGSRI 320 (1170)
Q Consensus 258 ----l~~---~ll~~l~~~~~~-----~~~~~l~~~l~~~L~~kk~---LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI 320 (1170)
... +.+..+.+.... .....+.-.-...++++.+ +||+|.+.+. .+...++ ...+.+|+|
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEE
Confidence 111 111221111000 0011111112256677654 9999999764 4455555 345799999
Q ss_pred EEEeCC
Q 046888 321 VVTTRD 326 (1170)
Q Consensus 321 IiTTR~ 326 (1170)
|+|--.
T Consensus 207 v~~GD~ 212 (262)
T PRK10536 207 IVNGDI 212 (262)
T ss_pred EEeCCh
Confidence 998654
No 203
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.018 Score=68.50 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=88.1
Q ss_pred ccccchhHHHHHHHHhh-----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc-
Q 046888 186 GLVGLSSRIECIKSLLC-----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV- 253 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~- 253 (1170)
++=|.++...+|.+.+. .+....+-|..+|+||.|||++|+++++.-.-.|-.+ . .-+-.+.-.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k-gpEL~sk~vG 510 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K-GPELFSKYVG 510 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c-CHHHHHHhcC
Confidence 44557766666664433 2335578899999999999999999999876555321 0 000000000
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCCCCCcEE
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGFCPGSRI 320 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~~~gsrI 320 (1170)
.-++..++++++ .-+--+.++.||.++.. ..+..|+..++.......|
T Consensus 511 eSEr~ir~iF~k-------------------AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 511 ESERAIREVFRK-------------------ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred chHHHHHHHHHH-------------------HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111222222222 11224577888877442 1255666666665555444
Q ss_pred EE---EeCChhHHHHh----CCCCcceEeecCCCHhHHHHHHHHHHhccC
Q 046888 321 VV---TTRDKQVLRKQ----GVKDEHVYEVERLNEDEGLELFYKYAFRQN 363 (1170)
Q Consensus 321 Ii---TTR~~~v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 363 (1170)
+| |-|...+-..+ ..+ .++.++.-+.+...++|..++-+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD--~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLD--RIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccc--eeEeecCccHHHHHHHHHHHHhcCC
Confidence 44 33443332222 234 7888888888888999999985443
No 204
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.0002 Score=74.95 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=66.9
Q ss_pred cccccccceeeccccccccccccc----ccCCCcccEEecCCCCC-------ch----hh--------hccccEEEccCc
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTS----ICKLKSLIWLCLNECLN-------LE----SF--------LESLKKINLGRT 742 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~c~~-------l~----~~--------~~~L~~L~L~~~ 742 (1170)
+-.+++|+..+|++|.+....|+. |.+-+.|++|.+++|-- +. .+ -+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 345566666666666655444432 33445566666665521 00 00 122666666666
Q ss_pred CCcccCc-----cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCC
Q 046888 743 TVTELPS-----SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLE 812 (1170)
Q Consensus 743 ~i~~lp~-----~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~ 812 (1170)
.+...|. .+..-.+|+.+.+..|.+... +...+--..+..+.+|+.|+|..|-++. +...+...+.|+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpe--gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPE--GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcc--hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 6655443 123335666666666665321 0011111113345666666666665552 223334445566
Q ss_pred EEECcCCCCc
Q 046888 813 WLELRENNFE 822 (1170)
Q Consensus 813 ~L~L~~n~l~ 822 (1170)
.|.+..|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 6666666444
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.78 E-value=0.0019 Score=65.32 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=80.3
Q ss_pred chhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC--cc
Q 046888 727 LESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP--EE 804 (1170)
Q Consensus 727 l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip--~~ 804 (1170)
+.........++|++|.+..++ .+..++.|.+|.|.+|.+.... +..-..+++|..|.|.+|+|.++- .-
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~-------p~L~~~~p~l~~L~LtnNsi~~l~dl~p 108 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRID-------PDLDTFLPNLKTLILTNNSIQELGDLDP 108 (233)
T ss_pred ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeec-------cchhhhccccceEEecCcchhhhhhcch
Confidence 3344455778889998888764 3677889999999999987543 332345678999999999888743 34
Q ss_pred cCCCCCCCEEECcCCCCcccc----ccccCCCCCCEEEecCCC
Q 046888 805 IGCLPSLEWLELRENNFESLP----VSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 805 l~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L~~c~ 843 (1170)
+..+|.|++|.+-+|..+..+ -.+..+|+|+.||.++=.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 667889999999999877554 236778888888887644
No 206
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.77 E-value=0.035 Score=71.58 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHHHhhcC-----C-C-CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 184 SKGLVGLSSRIECIKSLLCTG-----L-P-DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-----~-~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
...++|.+..++.+...+... . + ...++.++|+.|+|||++|+.+++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 346899999999888777521 1 1 1247889999999999999999986643
No 207
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.71 E-value=0.048 Score=69.93 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=40.3
Q ss_pred CccccchhHHHHHHHHhhc----CCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 185 KGLVGLSSRIECIKSLLCT----GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
+..+|.+...+++.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578999888888876642 222345899999999999999999999875444
No 208
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.031 Score=66.58 Aligned_cols=163 Identities=21% Similarity=0.191 Sum_probs=85.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
..-|.|.|..|+|||+||+++++.+... ..+++.-+.-.......+..+|+.+.. ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHh
Confidence 4568999999999999999999987643 233333221111223335555554432 2236777
Q ss_pred CCCeEEEEeCCCChH--------H----HHHHHccc----C-CCCCCcE--EEEEeCChhHHHHhCCC---CcceEeecC
Q 046888 288 RTKVFMVLDDVSEFE--------Q----LKYLVGWL----D-GFCPGSR--IVVTTRDKQVLRKQGVK---DEHVYEVER 345 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~~--------~----~~~l~~~~----~-~~~~gsr--IIiTTR~~~v~~~~~~~---~~~~~~l~~ 345 (1170)
..+-+|||||++... | .+.+...+ . ....+.+ +|.|......+...-+. -..+..++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 889999999994311 1 11111111 1 1123444 44444443322221111 115678888
Q ss_pred CCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC-hhHHHHH
Q 046888 346 LNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN-PLALEVL 390 (1170)
Q Consensus 346 L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~l 390 (1170)
+..++.-++++... ........+.+ ..-+..+|+|. |.-++++
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~~~~~d-Ld~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSDITMDD-LDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHH-HhhhhhhhhHH-HHHHHHhcCCccchhHHHH
Confidence 88888877776654 22221112222 22366777664 4444443
No 209
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.70 E-value=0.0002 Score=67.61 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=66.1
Q ss_pred CeeEEEecCCCCCCCCCCC--CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCC
Q 046888 592 KLRYLHLHKYPLRTLPSNF--KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNC 669 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 669 (1170)
+|...++++|.++++|..| .++.++.|+|++|.|..+|..+..++.|+.|+++.|.+....-.+..+.+|-.|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds--- 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS--- 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC---
Confidence 6888899999999999888 56689999999999999999999999999999999986544333444444444444
Q ss_pred cccccCCCcccccccc
Q 046888 670 THLNLCDTAIEEVPSS 685 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~ 685 (1170)
.+|.+.++|-.
T Consensus 131 -----~~na~~eid~d 141 (177)
T KOG4579|consen 131 -----PENARAEIDVD 141 (177)
T ss_pred -----CCCccccCcHH
Confidence 34566666654
No 210
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.69 E-value=0.00024 Score=88.14 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=23.3
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccc--ccccccccccceeecCCCC
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQ--IWEGKKKAFKLKSINLSHS 646 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~ 646 (1170)
+|+.||+++++++.+...-.+++|+.|.+.+-.+.. -...+..|++|+.||+|..
T Consensus 174 NL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 174 NLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 444444444444444322244444444444433331 1123344444444444443
No 211
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.11 Score=58.77 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC
Q 046888 289 TKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR 365 (1170)
Q Consensus 289 kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1170)
++=++|+|+++.. .....|+..+....+++.+|.+|.+ ..++..... ....+.+.+++.+++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~~L~~~~-----~ 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQWLKGQG-----I 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHHHHHHcC-----C
Confidence 3447788998753 4567777777666677776666554 455555432 23789999999999999886532 1
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 366 PEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
. ....+++.++|.|+....+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999876554
No 212
>PRK04132 replication factor C small subunit; Provisional
Probab=96.66 E-value=0.11 Score=65.56 Aligned_cols=150 Identities=11% Similarity=0.090 Sum_probs=90.0
Q ss_pred cCCChHHHHHHHHHHHHh-ccCCc-eEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEE
Q 046888 216 MGGIGKTTIVKALFNQIS-NEFEG-KCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFM 293 (1170)
Q Consensus 216 ~gGiGKTtLA~~v~~~~~-~~F~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~Ll 293 (1170)
+.++||||+|.++++++- +.+.. .+-+. .++..+...+.+ ++......... -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN-----ASd~rgid~IR~-iIk~~a~~~~~-------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN-----ASDERGINVIRE-KVKEFARTKPI-------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe-----CCCcccHHHHHH-HHHHHHhcCCc-------------CCCCCEEE
Confidence 788999999999999862 22322 23333 343345554433 32322211000 01245689
Q ss_pred EEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHH
Q 046888 294 VLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLT 370 (1170)
Q Consensus 294 VLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~ 370 (1170)
|+|+++.. ++...|+..+.......++|.+|.+. .+..... .....+.+++++.++-.+.+.+.+-..+.. -..
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTE 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCH
Confidence 99999864 45666776666555667777666554 3333322 223789999999999988887765332211 123
Q ss_pred HHHHHHHHHhCCChhHH
Q 046888 371 VLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 371 ~~~~~i~~~~~GlPLAl 387 (1170)
+....|++.++|.+...
T Consensus 712 e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 712 EGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 45678999999988543
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.08 Score=59.87 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=61.4
Q ss_pred CCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCC
Q 046888 288 RTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNH 364 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 364 (1170)
+++=++|+|+++.. .....|+..+....+++.+|++|.+. .++..... ....+.+.+++.++..+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~~~~~~L~~~~~---~ 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQQALDWLQAQSS---A 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHHHHHHHHHHHhc---c
Confidence 44557779999753 45677777776666777777777654 44444322 227899999999999998877641 1
Q ss_pred CChhHHHHHHHHHHHhCCChhHH
Q 046888 365 RPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 365 ~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
. ...+...+..++|.|+..
T Consensus 182 -~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred -C---hHHHHHHHHHcCCCHHHH
Confidence 1 112456788899999633
No 214
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.65 E-value=0.0023 Score=64.36 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=54.9
Q ss_pred cEEeccccccc-cCchHHHHHHHHhcC-CCcEEecC-CCCC--CCcchHHHHHHhhccceEEEEeccCc
Q 046888 11 DVFLSFRGEDT-RENFTSHLYAALCGK-KIKTFIDE-DLNR--GDEISPALLNAIEGSKISVIIFSKDY 74 (1170)
Q Consensus 11 dvFis~~~~d~-~~~f~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~ai~~s~~~i~v~S~~y 74 (1170)
-|||||+..+. ...+|..|++.|++. |+.|.+|. +... +..+...+.+++++++.+|||.|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999988543 346799999999999 99999998 7644 77899999999999999999999655
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.64 E-value=0.034 Score=62.56 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=81.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc-CHHHHHHHHHHHHhcCcccCCCCChhHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV-GLVHLHKQVVSLLLGERLETGGPNIPAYALE 284 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~ 284 (1170)
.-.+.++|||++|.|||.+|++++.++...| +..+..+-.+... ......++++...... .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~--------------a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAADI--------------I 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHHH--------------h
Confidence 4568999999999999999999999876443 2222232111111 2223334333322100 0
Q ss_pred HhcCCCeEEEEeCCCCh------------HHH--HHHHcccC----------C----CCCCcEEEEEeCChhHHHHh---
Q 046888 285 RLRRTKVFMVLDDVSEF------------EQL--KYLVGWLD----------G----FCPGSRIVVTTRDKQVLRKQ--- 333 (1170)
Q Consensus 285 ~L~~kk~LlVLDdv~~~------------~~~--~~l~~~~~----------~----~~~gsrIIiTTR~~~v~~~~--- 333 (1170)
+-+.++.+|++|+++.. .+. ..|+...+ | ..++--||+||-+...+...
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 12467899999998531 121 23433221 1 23445678888766543221
Q ss_pred --CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh
Q 046888 334 --GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL 385 (1170)
Q Consensus 334 --~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1170)
..+ ..| ..-+.++-.+++..+. +....+. .-..++++...|=|+
T Consensus 288 pGRfD--k~i--~lPd~e~R~eIL~~~~-r~~~l~~---~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 288 DGRME--KFY--WAPTREDRIGVVHGIF-RDDGVSR---EDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCC--cee--CCCCHHHHHHHHHHHh-ccCCCCH---HHHHHHHHcCCCCCc
Confidence 122 333 3455666677776665 3332221 223445555555554
No 216
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.62 E-value=0.034 Score=70.59 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=99.4
Q ss_pred CCchhHHHHHHHHhhhhhcccccCCC-----------CCCCccccchhHHHHHHHHhhc----CCCCeEEEEEEecCCCh
Q 046888 156 IRPEAMLVEVIVKDILKKLECTSMSS-----------DSSKGLVGLSSRIECIKSLLCT----GLPDVRIVGIWGMGGIG 220 (1170)
Q Consensus 156 ~~~e~~~i~~iv~~i~~~l~~~~~~~-----------~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiG 220 (1170)
..+|+..+....+-+.. +|.. ... ....+.+|.+...+++.++|.. +.....++.++|++|+|
T Consensus 284 ~~~e~~~~~~yl~~~~~-~pw~-~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~G 361 (784)
T PRK10787 284 MSAEATVVRGYIDWMVQ-VPWN-ARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVG 361 (784)
T ss_pred CCchHHHHHHHHHHHHh-CCCC-CCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCC
Confidence 46777777777766543 2111 111 1234589999999999888763 12345689999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC---CCCChhHHHHHHhcCCCeEEEEeC
Q 046888 221 KTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET---GGPNIPAYALERLRRTKVFMVLDD 297 (1170)
Q Consensus 221 KTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~l~~~l~~~L~~kk~LlVLDd 297 (1170)
|||+|+.++..+...|-... ...+ .+.. ++.+..... ....+.+.+.. .....-+++||.
T Consensus 362 KTtl~~~ia~~l~~~~~~i~-~~~~-------~d~~--------~i~g~~~~~~g~~~G~~~~~l~~-~~~~~~villDE 424 (784)
T PRK10787 362 KTSLGQSIAKATGRKYVRMA-LGGV-------RDEA--------EIRGHRRTYIGSMPGKLIQKMAK-VGVKNPLFLLDE 424 (784)
T ss_pred HHHHHHHHHHHhCCCEEEEE-cCCC-------CCHH--------HhccchhccCCCCCcHHHHHHHh-cCCCCCEEEEEC
Confidence 99999999987654432211 1111 1111 111111100 11122212211 122344788999
Q ss_pred CCChHH------HHHHHcccCCC---------------CCCcEEEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHH
Q 046888 298 VSEFEQ------LKYLVGWLDGF---------------CPGSRIVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFY 356 (1170)
Q Consensus 298 v~~~~~------~~~l~~~~~~~---------------~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 356 (1170)
++.... ...|...++.. -...-+|.|+....+.... .+...++++.+++.+|-.++..
T Consensus 425 idk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aL-l~R~~ii~~~~~t~eek~~Ia~ 503 (784)
T PRK10787 425 IDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPL-LDRMEVIRLSGYTEDEKLNIAK 503 (784)
T ss_pred hhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHH-hcceeeeecCCCCHHHHHHHHH
Confidence 965321 24444433311 0223344455443322222 2233688999999999999888
Q ss_pred HHH
Q 046888 357 KYA 359 (1170)
Q Consensus 357 ~~a 359 (1170)
++.
T Consensus 504 ~~L 506 (784)
T PRK10787 504 RHL 506 (784)
T ss_pred Hhh
Confidence 876
No 217
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.62 E-value=0.036 Score=65.28 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...+|.++|.+|+||||+|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877654
No 218
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.00054 Score=85.06 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=72.4
Q ss_pred ccccceeecccccccccc-ccccc-CCCcccEEecCCCC----Cchhh---hccccEEEccCcCCcccCccccCCCCCCE
Q 046888 689 LTNLEYLYINRCKRLKRV-STSIC-KLKSLIWLCLNECL----NLESF---LESLKKINLGRTTVTELPSSFENIEGLGT 759 (1170)
Q Consensus 689 l~~L~~L~L~~~~~l~~l-p~~i~-~L~~L~~L~l~~c~----~l~~~---~~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 759 (1170)
-.+|++|++++......- |..++ .||+|+.|.+.|-. .+..+ -++|..||+++++++.+ ..+++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 468999999885543222 22233 47889999888732 11222 34477777777777766 66677777777
Q ss_pred EEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-------cccCCCCCCCEEECcCCCCc
Q 046888 760 LGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-------EEIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 760 L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-------~~l~~l~~L~~L~L~~n~l~ 822 (1170)
|.+.+-.+.... .+-. +-+|++|+.||+|......-+ +.-..+|+|+.||.|++.+.
T Consensus 200 L~mrnLe~e~~~----~l~~--LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQ----DLID--LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchh----hHHH--HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777665543210 1111 445666666666665433321 11233566666666665444
No 219
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.047 Score=62.29 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
..++|+++|.+|+||||++..++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 458999999999999999999998776443334444
No 220
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.55 E-value=0.0045 Score=67.54 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcc-----cCCCCChh--
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERL-----ETGGPNIP-- 279 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-----~~~~~~l~-- 279 (1170)
.-+.++|.|.+|.||||||+.++++++.+|+..+++.-+.+ +...+..+.+++...-..... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe---r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE---RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34679999999999999999999999888888888876655 122233444443322111000 00111111
Q ss_pred ------HHHHHHh--c-CCCeEEEEeCCCChHH
Q 046888 280 ------AYALERL--R-RTKVFMVLDDVSEFEQ 303 (1170)
Q Consensus 280 ------~~l~~~L--~-~kk~LlVLDdv~~~~~ 303 (1170)
-.+.+++ + ++.+|+++||+-...+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 1123444 3 7899999999965433
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.067 Score=61.07 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCceEEEEechhhhhc
Q 046888 193 RIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE---------------------FEGKCFIENVREEIEN 251 (1170)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~ 251 (1170)
.-+++...+..+ .-.....+.|+.|+||+|+|.+++..+--. .+...++..... ..
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~ 86 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KS 86 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cc
Confidence 344555555432 224567899999999999999999865211 111222210000 00
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh-h
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK-Q 328 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~-~ 328 (1170)
..+++++. ++...+.. .-..+++=++|+|+++. ......|+..+....+++.+|.+|.+. .
T Consensus 87 ~I~idqiR-~l~~~~~~---------------~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 87 SLGVDAVR-EVTEKLYE---------------HARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred cCCHHHHH-HHHHHHhh---------------ccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 01111111 11111110 01124555788899875 345677777776666777766666654 4
Q ss_pred HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 329 VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 329 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
++...... .+.+.+++++.+++.+.+.... . .+ .+.+..++..++|.|...
T Consensus 151 lLpTIrSR-Cq~~~~~~~~~~~~~~~L~~~~---~-~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 151 LLATLRSR-CRLHYLAPPPEQYALTWLSREV---T-MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ChHHHHhc-cccccCCCCCHHHHHHHHHHcc---C-CC---HHHHHHHHHHcCCCHHHH
Confidence 55443222 2678999999999998876532 1 11 223567899999999643
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.52 E-value=0.0049 Score=68.01 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 243 (1170)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987665 44556665
No 223
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.52 E-value=0.01 Score=62.57 Aligned_cols=110 Identities=13% Similarity=0.172 Sum_probs=64.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE-echhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE-NVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
.+|.|+|..|.||||++..+...+.......++.. +-.+ ..... ...+..+ .....+.....+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-----~~~~~-~~~~i~q---~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-----FVHES-KRSLINQ---REVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-----ccccC-ccceeee---cccCCCccCHHHHHHHHhc
Confidence 36899999999999999998887765544444432 1111 00000 0000000 0001122345556667788
Q ss_pred CCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHH
Q 046888 288 RTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVL 330 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~ 330 (1170)
..+=.+++|.+.+.+.+....... ..|-.++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 788899999998887766554332 2455577777665543
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.49 E-value=0.058 Score=64.64 Aligned_cols=202 Identities=15% Similarity=0.145 Sum_probs=120.9
Q ss_pred CCCCCccccchhHHHHHHHHhhc--CC-CCeEEEEEEecCCChHHHHHHHHHHHHh-----c---cCCceEEEEechhhh
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCT--GL-PDVRIVGIWGMGGIGKTTIVKALFNQIS-----N---EFEGKCFIENVREEI 249 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~---~F~~~~~~~~~~~~~ 249 (1170)
..++..+-+|+.+..+|...+.. .. .....+-|.|.+|.|||..+..|.+.++ . .|+ .+.+. .
T Consensus 392 s~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN-----g 465 (767)
T KOG1514|consen 392 SAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN-----G 465 (767)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc-----c
Confidence 34777899999999999988763 22 3345889999999999999999998654 2 243 23443 2
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc-----CCCeEEEEeCCCChHH--HHHHHcccCCC-CCCcEEE
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR-----RTKVFMVLDDVSEFEQ--LKYLVGWLDGF-CPGSRIV 321 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~-----~kk~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrII 321 (1170)
-.-.+..+++..|...+.++.... ....+.+..+.. .++.++++|+++..-. -+-+-..++|. .++|+++
T Consensus 466 m~l~~~~~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 466 LRLASPREIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred eeecCHHHHHHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceE
Confidence 233457888889988887765442 111222223433 4678899999854311 12222334553 5788866
Q ss_pred EEeCCh--hH---------HHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhCCChhHHHH
Q 046888 322 VTTRDK--QV---------LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNH-RPEHLTVLSKKAVRYAEGNPLALEV 389 (1170)
Q Consensus 322 iTTR~~--~v---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLAl~~ 389 (1170)
|-+=.. .+ ...+|. ..+...+-++++-.++...+.-+-.. .....+-++++|+.-.|..-.|+.+
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred EEEecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 644211 11 112222 35667777777777777666533222 2233444566666666666666665
Q ss_pred HHHH
Q 046888 390 LGSS 393 (1170)
Q Consensus 390 lg~~ 393 (1170)
.-+.
T Consensus 621 c~RA 624 (767)
T KOG1514|consen 621 CRRA 624 (767)
T ss_pred HHHH
Confidence 5444
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.0082 Score=68.11 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=29.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.-+.++|.+|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998766555566665
No 226
>PRK07261 topology modulation protein; Provisional
Probab=96.47 E-value=0.009 Score=61.40 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 227
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.39 E-value=0.031 Score=56.88 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=74.5
Q ss_pred cchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc--------------------cCCceEEEEechhh
Q 046888 189 GLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN--------------------EFEGKCFIENVREE 248 (1170)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~ 248 (1170)
|-+...+.|...+..+ .-...+.++|..|+||+|+|+++++.+-. ..+...++....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-- 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-- 77 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT--
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc--
Confidence 4455666777777533 22446789999999999999999986421 133334443110
Q ss_pred hhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCC
Q 046888 249 IENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRD 326 (1170)
Q Consensus 249 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~ 326 (1170)
........++. ++...+.. .-..+++=++|+||++. .+....|+..+.....++++|++|++
T Consensus 78 ~~~~i~i~~ir-~i~~~~~~---------------~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 78 KKKSIKIDQIR-EIIEFLSL---------------SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSSBSHHHHH-HHHHHCTS---------------S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred ccchhhHHHHH-HHHHHHHH---------------HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 00122333322 22222211 11123455788999975 45567777777666788898888887
Q ss_pred hh-HHHHhCCCCcceEeecCCC
Q 046888 327 KQ-VLRKQGVKDEHVYEVERLN 347 (1170)
Q Consensus 327 ~~-v~~~~~~~~~~~~~l~~L~ 347 (1170)
.. ++..... ....+.+++|+
T Consensus 142 ~~~il~TI~S-Rc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRS-RCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHT-TSEEEEE----
T ss_pred hHHChHHHHh-hceEEecCCCC
Confidence 64 3433322 22566666653
No 228
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.38 E-value=0.091 Score=60.08 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
+.++|....+.++.+.+..-...-.-|.|+|..|.||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999988888777543333456889999999999999999753
No 229
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0025 Score=67.36 Aligned_cols=109 Identities=28% Similarity=0.370 Sum_probs=73.9
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCC--CCCC-CCcccCCCCCCCEEECcCCCCc---ccc
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNC--ALTA-IPEEIGCLPSLEWLELRENNFE---SLP 825 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~--~l~~-ip~~l~~l~~L~~L~L~~n~l~---~lp 825 (1170)
..+..|+.|++.++.++.. .. +..|++|+.|.++.| .+.. ++.....+++|++|+|++|++. +++
T Consensus 40 d~~~~le~ls~~n~gltt~----~~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL----TN-----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred ccccchhhhhhhccceeec----cc-----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 3445666666666665431 12 556788999999999 4443 5544556699999999999776 333
Q ss_pred ccccCCCCCCEEEecCCCCCCC------CCCCccccceeccccccccCCCC
Q 046888 826 VSIKQLSRLKRLDLSNCSMLQS------IPELPPSLKWLQAGNCKRLQSLP 870 (1170)
Q Consensus 826 ~~l~~l~~L~~L~L~~c~~l~~------lp~l~~~L~~L~i~~c~~L~~l~ 870 (1170)
.+..+.+|..|++.+|.-.+. +-.+.++|++|+-.++..-+...
T Consensus 111 -pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 111 -PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred -hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 567888899999999986551 11245788888877776655443
No 230
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.038 Score=68.26 Aligned_cols=118 Identities=23% Similarity=0.321 Sum_probs=72.6
Q ss_pred CccccchhHHHHHHHHhhc-------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 185 KGLVGLSSRIECIKSLLCT-------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
...+|-+..++.+.+.+.. ...........|+.|+|||.||++++..+-+.=+..+-+ +..| .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSE---------y 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSE---------Y 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHH---------H
Confidence 4579999999888877652 122356778899999999999999998764322332322 1222 1
Q ss_pred HHHHHHHHHhcCcccC-CCCChhHHHHHHhcCCCe-EEEEeCCCCh--HHHHHHHcccCC
Q 046888 258 LHKQVVSLLLGERLET-GGPNIPAYALERLRRTKV-FMVLDDVSEF--EQLKYLVGWLDG 313 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~-~~~~l~~~l~~~L~~kk~-LlVLDdv~~~--~~~~~l~~~~~~ 313 (1170)
.-+.-.+.+.+..... +.+. --.+-+..++++| +|.||.|+.. +-.+-|+..++.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1223334444444333 2222 2223388888888 8889999754 456666666553
No 231
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.15 Score=58.08 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCC-hhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC
Q 046888 289 TKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRD-KQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR 365 (1170)
Q Consensus 289 kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1170)
++=++|+|+++. ......|+..+....+++.+|.+|.+ ..++..... ....+.+.+++.++..+.+.... .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 444778899875 45577777777766677766655544 555544322 23789999999999999887642 1
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 366 PEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
.+ ...++..++|.|+....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999754433
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.28 E-value=0.022 Score=57.77 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=27.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766545566664
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.27 E-value=0.0034 Score=62.20 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 046888 211 VGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 234
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.13 Score=60.55 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=86.6
Q ss_pred CCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 184 SKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
.+++=|++..+++|.+++.. +-...|-|.++|++|.|||.||++++.+..--| +. ++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~-----isAp- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS-----ISAP- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee-----ecch-
Confidence 46788999999999887652 223457799999999999999999998875333 22 1110
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--------HH-----HHHHHcccCC------C
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--------EQ-----LKYLVGWLDG------F 314 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--------~~-----~~~l~~~~~~------~ 314 (1170)
++.+...++ ....+.+...+.-..-++++++|+++.. .+ +..|+...+. +
T Consensus 258 -------eivSGvSGE----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 -------EIVSGVSGE----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -------hhhcccCcc----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 111111111 1222333333445667999999999541 11 2333333221 1
Q ss_pred CCCcEEEE-EeCChhHHHH---hC-CCCcceEeecCCCHhHHHHHHHHHHh
Q 046888 315 CPGSRIVV-TTRDKQVLRK---QG-VKDEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 315 ~~gsrIIi-TTR~~~v~~~---~~-~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
+.+--||- |+|...+-.. .| .+ ..+.+.--+...-.+++...+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFd--rEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFD--REICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhcccccc--ceeeecCCchHHHHHHHHHHHh
Confidence 22322332 5565433222 22 23 5567766677666667666653
No 235
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.26 E-value=0.042 Score=57.82 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=97.5
Q ss_pred CccccchhHHHH---HHHHhhc----CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 185 KGLVGLSSRIEC---IKSLLCT----GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 185 ~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
++.||.+....+ |.+.|.. +.-..+-|..+|++|.|||.+|++++++.+.-| +. +. ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-----vk----at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-----VK----ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-----ec----hHH
Confidence 467888766554 4455542 234478899999999999999999998765332 21 00 001
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--------------HHHHHHHcccCCC--CCCcEEE
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--------------EQLKYLVGWLDGF--CPGSRIV 321 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--------------~~~~~l~~~~~~~--~~gsrII 321 (1170)
+ .++.-.++...+.+...+.-+.-++.+.+|.++.. +...+|+..++.. +.|-.-|
T Consensus 187 ----l----iGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 187 ----L----IGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred ----H----HHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1 11111112222222222223346889999988542 2356666666543 2344444
Q ss_pred EEeCChhHHHH-hCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC
Q 046888 322 VTTRDKQVLRK-QGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 322 iTTR~~~v~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 383 (1170)
-.|-...++.. ....-...++...-+++|-.+++..++-.-.-+-+.. .+.++++.+|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 45544444332 2222225678888899999999999984433332211 34456666654
No 236
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.25 E-value=0.077 Score=65.30 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=39.9
Q ss_pred CCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 183 SSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....++|....++++.+.+..-.....-|.|+|..|.|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 44689999999999887775433334567899999999999999998753
No 237
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.23 E-value=0.0039 Score=60.02 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 238
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.055 Score=62.07 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=80.7
Q ss_pred ccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC---------------------CceEEEEe
Q 046888 186 GLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF---------------------EGKCFIEN 244 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~ 244 (1170)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+-... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 356777777787777753332334599999999999999999999775332 2222222
Q ss_pred chhhhhcCcC---HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcE
Q 046888 245 VREEIENGVG---LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSR 319 (1170)
Q Consensus 245 ~~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr 319 (1170)
.+.... .....+++....... ...++.-++++|+++.. +....+...+.......+
T Consensus 81 ----~s~~~~~~i~~~~vr~~~~~~~~~---------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 81 ----PSDLRKIDIIVEQVRELAEFLSES---------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred ----ccccCCCcchHHHHHHHHHHhccC---------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 122222 122222222222110 01245678999999764 335566655555667788
Q ss_pred EEEEeCCh-hHHHHhCCCCcceEeecCCCH
Q 046888 320 IVVTTRDK-QVLRKQGVKDEHVYEVERLNE 348 (1170)
Q Consensus 320 IIiTTR~~-~v~~~~~~~~~~~~~l~~L~~ 348 (1170)
+|++|.+. .+...... ....+++++.+.
T Consensus 142 ~il~~n~~~~il~tI~S-Rc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRS-RCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhh-cceeeecCCchH
Confidence 88887743 33332211 225666666333
No 239
>PRK08118 topology modulation protein; Reviewed
Probab=96.21 E-value=0.012 Score=60.19 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=26.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc---cCCceEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN---EFEGKCF 241 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 241 (1170)
+.|.|+|++|+||||||+.+++++.- +|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35899999999999999999997643 3555554
No 240
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.17 E-value=0.0044 Score=66.33 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=29.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.++|+|..|.|||||++.+......+|..++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5789999999999999999999999997665554
No 241
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.16 E-value=0.043 Score=70.86 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHhhcC------CC-CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 185 KGLVGLSSRIECIKSLLCTG------LP-DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++|-+..++.+...+... .+ ....+.++|+.|+|||+||+.+++.+-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46899999999988776521 11 134567999999999999999998764
No 242
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.099 Score=64.30 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=104.2
Q ss_pred CCCCccccchhHHHHHHHHhh----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLC----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
...+++.|.++..++|+++.. .+..-.+=|.++|++|.|||-||++++-+-. +=|+.....
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS---- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS---- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH----
Confidence 344678999988887776653 1223357799999999999999999987543 223321110
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC-----------------hHHHHHHHcccCCC
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE-----------------FEQLKYLVGWLDGF 314 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~-----------------~~~~~~l~~~~~~~ 314 (1170)
++...+.+. +...+.+.....-...+.++.+|+++. ...+..|+...+.+
T Consensus 379 ---------EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ---------EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ---------HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 000000000 111111111122234566777777632 12267777777777
Q ss_pred CCCcEEE--EEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 315 CPGSRIV--VTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 315 ~~gsrII--iTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
..++.|| -+|...+++... ..+ ..+.++.-+..+..++|..|+-+.... .+..++++ ++...-|.+=|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfd--r~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFD--RQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccc--cceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 6555343 345444443322 234 678888889999999999998443332 34455666 88888887744
No 243
>PRK14974 cell division protein FtsY; Provisional
Probab=96.15 E-value=0.11 Score=59.21 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..++|+++|++|+||||++..++..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999988877654
No 244
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.14 E-value=0.1 Score=59.63 Aligned_cols=45 Identities=29% Similarity=0.226 Sum_probs=34.1
Q ss_pred cccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 187 LVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
+||....++++.+.+..-...-.-|.|+|..|.||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777776666533333456899999999999999999874
No 245
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.13 E-value=0.052 Score=56.74 Aligned_cols=122 Identities=29% Similarity=0.385 Sum_probs=71.8
Q ss_pred CCCCccccchhHHHHHHHHhh---cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 182 DSSKGLVGLSSRIECIKSLLC---TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
..-..++|.+...+.|.+-.. .+ -..--|.+||.-|.||+.|++++.+.+..+.-..+=|. ++ +-.++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~--k~---dl~~Lp-- 128 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD--KE---DLATLP-- 128 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc--HH---HHhhHH--
Confidence 344579999998888754321 22 22345789999999999999999999988776533322 11 111111
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCC---ChHHHHHHHcccCCC---CCCcEEEEEeCCh-hHHH
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVS---EFEQLKYLVGWLDGF---CPGSRIVVTTRDK-QVLR 331 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~---~~~~~~~l~~~~~~~---~~gsrIIiTTR~~-~v~~ 331 (1170)
.++.++ +.+.+|+.|..||+. ..+..+.|...+... .|...++..|.++ ++..
T Consensus 129 --~l~~~L------------------r~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 129 --DLVELL------------------RARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred --HHHHHH------------------hcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 122111 224679999999983 334456655554422 2334455444443 4444
No 246
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.12 E-value=0.11 Score=60.92 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++.++|.+|+||||+|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 247
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.12 E-value=0.016 Score=62.62 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=38.1
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.|-++|..+-..-.++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455566555566789999999999999999999987766666778886
No 248
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.11 E-value=0.013 Score=66.52 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=55.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccC-CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCC-CCChh-----H
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEF-EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETG-GPNIP-----A 280 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~l~-----~ 280 (1170)
-+.++|+|.+|.|||||++.+++.+..+. +..+++.-+.+ ....+..+.+.+...+........ ...++ .
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~ 209 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVL 209 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999886654 33333333322 345566777777665544322111 11011 1
Q ss_pred HHHHHh--cCCCeEEEEeCCCCh
Q 046888 281 YALERL--RRTKVFMVLDDVSEF 301 (1170)
Q Consensus 281 ~l~~~L--~~kk~LlVLDdv~~~ 301 (1170)
...+++ .+++++||+|++...
T Consensus 210 ~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 210 ERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHcCCCEEEEEeCcHHH
Confidence 112222 479999999999543
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.11 E-value=0.0055 Score=69.24 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=41.2
Q ss_pred ccccchhHHHHHHHHhhcC----CCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 186 GLVGLSSRIECIKSLLCTG----LPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.++|+++.++++.+++... ....++++++|++|.||||||+++++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999998887632 234688999999999999999999987643
No 250
>PRK10867 signal recognition particle protein; Provisional
Probab=96.10 E-value=0.12 Score=60.72 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999988877655
No 251
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.04 E-value=0.019 Score=64.68 Aligned_cols=100 Identities=12% Similarity=0.210 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+. . ..+..++...... ..... ..+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----~------~~l~~~lk~~~~~-------~~~~~-~l~~l 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----F------PEFIRELKNSISD-------GSVKE-KIDAV 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----H------HHHHHHHHHHHhc-------CcHHH-HHHHh
Confidence 3467899999999999999999998865544456664 2 2233333332211 11221 12333
Q ss_pred cCCCeEEEEeCCCCh--HHHH--HHHccc-CCC-CCCcEEEEEeCC
Q 046888 287 RRTKVFMVLDDVSEF--EQLK--YLVGWL-DGF-CPGSRIVVTTRD 326 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~~--~~~~--~l~~~~-~~~-~~gsrIIiTTR~ 326 (1170)
. +-=||||||+... ..|. .++..+ ... ..+-.+|+||--
T Consensus 216 ~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 K-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3 4557899999532 2232 233322 221 244567888763
No 252
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.02 E-value=0.061 Score=67.30 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=82.4
Q ss_pred ccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCH
Q 046888 186 GLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 255 (1170)
.+.|.+...+++.+.+.. +..-.+-|.|+|++|.|||++|+.++.+....| +.+. ..+
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~-------- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-------- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH--------
Confidence 456666666655554431 011134599999999999999999988765433 1111 110
Q ss_pred HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------------HHHHHHcccCCCCC--C
Q 046888 256 VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------------QLKYLVGWLDGFCP--G 317 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------------~~~~l~~~~~~~~~--g 317 (1170)
+... ..+ .+...+...+.......+.+|++|+++... .+..++..++.+.. +
T Consensus 221 --~~~~----~~g----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 --FVEM----FVG----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred --hHHh----hhc----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 0000 000 001111212222334467899999986531 13344444443322 3
Q ss_pred cEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 318 SRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 318 srIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
.-+|.||...+.+... ..+ ..+.++..+.++..+++..+.-+
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfd--r~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFD--RQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccc--eEEEcCCCCHHHHHHHHHHHhhc
Confidence 3445577655433321 233 67889999999999998888743
No 253
>PRK06696 uridine kinase; Validated
Probab=95.99 E-value=0.013 Score=63.20 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=35.9
Q ss_pred chhHHHHHHHHhhc-CCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 190 LSSRIECIKSLLCT-GLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 190 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
|.+.+++|.+.+.. ..+...+|+|.|.+|.||||||+.+...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55666677665543 34567899999999999999999999987644
No 254
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.98 E-value=0.0019 Score=67.97 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=29.1
Q ss_pred CCCCCEEeCCCCCCCCCCc-----ccCCCCCCCEEECcCCCCcc--c----cccccCCCCCCEEEecCCCC
Q 046888 785 LFSLNWLNLNNCALTAIPE-----EIGCLPSLEWLELRENNFES--L----PVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 785 l~~L~~L~L~~~~l~~ip~-----~l~~l~~L~~L~L~~n~l~~--l----p~~l~~l~~L~~L~L~~c~~ 844 (1170)
-|.|+......|++...|. .+..-.+|+.+.+..|.|.. + -..+..+.+|+.|||.+|..
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 3455666666665554332 12222455666666665431 0 11234455666666666643
No 255
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.09 Score=54.82 Aligned_cols=150 Identities=21% Similarity=0.368 Sum_probs=83.7
Q ss_pred ccc-chhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcC
Q 046888 187 LVG-LSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVG 254 (1170)
Q Consensus 187 ~vG-r~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 254 (1170)
+|| .+..++++.+.+.. +-.+.+-|.++|++|.|||-||+++++.- .+.|+. +..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg------- 214 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG------- 214 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech-------
Confidence 444 56777777766542 22456778999999999999999998743 234443 221
Q ss_pred HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------------HHHHHHcccCCCC--C
Q 046888 255 LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------------QLKYLVGWLDGFC--P 316 (1170)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 316 (1170)
..+.+.. .++ +..++++...-.-.+-+-+|..|.++... ..-.|+..++.|. .
T Consensus 215 -selvqk~----ige----gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 215 -SELVQKY----IGE----GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -HHHHHHH----hhh----hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 1111111 111 11111111111123457788888875411 1334455555543 3
Q ss_pred CcEEEEEeCChhHHHH-----hCCCCcceEeecCCCHhHHHHHHHHHHh
Q 046888 317 GSRIVVTTRDKQVLRK-----QGVKDEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 317 gsrIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
.-+||..|..-+++.. -.++ ..++.++-+.+...+++.-|.-
T Consensus 286 nikvimatnridild~allrpgrid--rkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRID--RKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred ceEEEEeccccccccHhhcCCCccc--ccccCCCCCHHHHHHHHHHhhh
Confidence 4577776654444332 2344 6688888888888888877763
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.014 Score=63.96 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=29.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567899999999999999999999884334455554
No 257
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.95 E-value=0.022 Score=73.23 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=39.1
Q ss_pred CccccchhHHHHHHHHhhc-------CCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 185 KGLVGLSSRIECIKSLLCT-------GLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..++|-+..++.+.+.+.. ......++.++|++|+|||.||++++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4689999999998877642 1122457899999999999999999987643
No 258
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.94 E-value=0.028 Score=60.79 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC------CceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF------EGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 243 (1170)
..|..+|..+-..-.++.|+|.+|.|||+||..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 345555655556678999999999999999999987665444 5667776
No 259
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0039 Score=65.95 Aligned_cols=105 Identities=29% Similarity=0.274 Sum_probs=61.6
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCC--Ccc-cccccccccccceeecCCCCCCC--ccCCCCCCCCccccccc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFS--KVV-QIWEGKKKAFKLKSINLSHSQYL--IRIPDPSEAPNLERINL 666 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~--~i~-~l~~~~~~l~~L~~L~Ls~~~~l--~~~p~~~~l~~L~~L~L 666 (1170)
.|..|++.+..++++-..-.+++|+.|.++.| .+. .++.....+++|++|+|++|++. ..++.+..+.||..|++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 45566666666655544445778888888888 443 44444566688888888888753 33344566667777777
Q ss_pred cCCcccccCCCcccccccccccccccceeecccc
Q 046888 667 WNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRC 700 (1170)
Q Consensus 667 ~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~ 700 (1170)
.+|...++.... ...+.-+++|++|+-..+
T Consensus 124 ~n~~~~~l~dyr----e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 124 FNCSVTNLDDYR----EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccCCccccccHH----HHHHHHhhhhcccccccc
Confidence 776655322211 011334555555554443
No 260
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.11 Score=59.23 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh-HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC
Q 046888 289 TKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDKQ-VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR 365 (1170)
Q Consensus 289 kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1170)
.|++ |+|+++.. .....++..+.....+..+|++|.+.. +..... .....+.+.+++.+++.+.+.... .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 4444 55887643 334444444443335566777777653 433321 122688999999999998886531 1
Q ss_pred ChhHHHHHHHHHHHhCCChhH
Q 046888 366 PEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLA 386 (1170)
.... ..+..++|-|+.
T Consensus 187 ~~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 187 AEPE-----ERLAFHSGAPLF 202 (325)
T ss_pred CcHH-----HHHHHhCCChhh
Confidence 1111 123568898864
No 261
>PRK07667 uridine kinase; Provisional
Probab=95.84 E-value=0.017 Score=60.69 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
++++...+....+...+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555665555566899999999999999999999987643
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0094 Score=58.35 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=29.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhcc-CCce-EEEEech
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNE-FEGK-CFIENVR 246 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~-~~~~~~~ 246 (1170)
--|+|.||+|+||||+++.+.+.++.. |... +|...+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 458999999999999999999988766 6533 3333333
No 263
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.84 E-value=0.16 Score=64.49 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..++|....++++.+.+..-...-.-|.|+|..|.|||++|+.+++.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 479999998888876665333334578999999999999999998754
No 264
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.84 E-value=0.025 Score=60.77 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..|..+|..+-..-+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455666555566789999999999999999999987765545567775
No 265
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.78 E-value=0.053 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 266
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.76 E-value=0.019 Score=60.08 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=59.1
Q ss_pred chhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH--hccCCceEEEEechhhhhcCcC--HHHHHH-----
Q 046888 190 LSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI--SNEFEGKCFIENVREEIENGVG--LVHLHK----- 260 (1170)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~~~~~~~~--~~~l~~----- 260 (1170)
+..+-+...+.|. +..+|.+.|++|.|||.||.+.+-+. ..+|+..++....-+ +.+.-+ .-.+.+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~-~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE-AGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S---TT----SS---------TT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC-CccccccCCCCHHHHHHHH
Confidence 3334444444453 45689999999999999999887642 466777777654322 111111 001111
Q ss_pred --HHHHHHhcCcccCCCCChhHHH---------HHHhcCC---CeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEe
Q 046888 261 --QVVSLLLGERLETGGPNIPAYA---------LERLRRT---KVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTT 324 (1170)
Q Consensus 261 --~ll~~l~~~~~~~~~~~l~~~l---------~~~L~~k---k~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTT 324 (1170)
-+...+..-- +...+...+ ...++++ ..+||+|++.+ .++++.++. ..+.|||||++-
T Consensus 80 ~~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~G 153 (205)
T PF02562_consen 80 LRPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITG 153 (205)
T ss_dssp THHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE
T ss_pred HHHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEec
Confidence 1111111100 112222111 1234443 46899999965 456777654 457899999986
Q ss_pred CCh
Q 046888 325 RDK 327 (1170)
Q Consensus 325 R~~ 327 (1170)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 543
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.75 E-value=0.055 Score=59.97 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
...++++++|.+|+||||++..++..++..-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998776553334444
No 268
>PHA00729 NTP-binding motif containing protein
Probab=95.73 E-value=0.043 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+...|.|.|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998763
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.71 E-value=0.63 Score=53.34 Aligned_cols=45 Identities=16% Similarity=0.368 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhhcCC-CCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 191 SSRIECIKSLLCTGL-PDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 191 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
+.-.+.|.+.+.... +...+|||.|.=|.||||+.+.+.+++...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776543 678899999999999999999999988776
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.70 E-value=0.23 Score=58.11 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
...+|+++|.+|+||||+|..++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 358999999999999999999988766543233333
No 271
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.70 E-value=0.012 Score=58.27 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=32.0
Q ss_pred ccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 188 VGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
||....++++.+.+..-.....-|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 566777777776665433344568999999999999999998753
No 272
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.12 Score=60.02 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++|.++|..|+||||.+..++.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988664
No 273
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.64 E-value=0.16 Score=55.72 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=91.4
Q ss_pred CCCccccchhHHHHHHHHhhcC--CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhh-hcCcCHHHHH
Q 046888 183 SSKGLVGLSSRIECIKSLLCTG--LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEI-ENGVGLVHLH 259 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~~~~~~~~l~ 259 (1170)
....++|-.++.+++.+++... -++.--|.|+|+.|.|||+|.-....+ .+.|.-...+..+.... .+...+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457999999999988887631 123346789999999999988766655 33344333443322211 1122233444
Q ss_pred HHHHHHHhcCcccC-CCCChhHHHHHHhc------CCCeEEEEeCCCChH----H--HHHHH-cccCCCCCCcEEEEEeC
Q 046888 260 KQVVSLLLGERLET-GGPNIPAYALERLR------RTKVFMVLDDVSEFE----Q--LKYLV-GWLDGFCPGSRIVVTTR 325 (1170)
Q Consensus 260 ~~ll~~l~~~~~~~-~~~~l~~~l~~~L~------~kk~LlVLDdv~~~~----~--~~~l~-~~~~~~~~gsrIIiTTR 325 (1170)
.++..++....... ...+....+.+.|+ +.++++|+|.+|-.. | +-.+. ..-....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44444433322221 22333333444443 346999999886432 2 22222 12223456677889999
Q ss_pred ChhH--HHH-h--CCCCcceEeecCCCHhHHHHHHHHH
Q 046888 326 DKQV--LRK-Q--GVKDEHVYEVERLNEDEGLELFYKY 358 (1170)
Q Consensus 326 ~~~v--~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1170)
-.-+ ++. . ....-.++-.+.++-++-.++++.-
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 6522 111 1 1111135555666666555555444
No 274
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.4 Score=57.22 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=103.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc----CC--ceEEEEechhhhhcCcC
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE----FE--GKCFIENVREEIENGVG 254 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~--~~~~~~~~~~~~~~~~~ 254 (1170)
|...+++||-+.-.+.|...+..+. -..--...|.-|+||||+||-++..+-.. .+ ..|..+ .+ +... .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~-I~~g-~ 86 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KE-INEG-S 86 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hh-hhcC-C
Confidence 3455678999999999999886442 13345689999999999999999854211 11 112111 00 1111 0
Q ss_pred HHHHHH-HHHHHHhcCcccCCCCChhHHHHHHh-----cCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCC
Q 046888 255 LVHLHK-QVVSLLLGERLETGGPNIPAYALERL-----RRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRD 326 (1170)
Q Consensus 255 ~~~l~~-~ll~~l~~~~~~~~~~~l~~~l~~~L-----~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~ 326 (1170)
..++.+ +-++ ..+.+.+++.. +.. .++.=.+|+|.|.. ...+..|+..+....+.-..|..|.+
T Consensus 87 ~~DviEiDaAS-------n~gVddiR~i~-e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 87 LIDVIEIDAAS-------NTGVDDIREII-EKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cccchhhhhhh-------ccChHHHHHHH-HHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 000000 0000 00222332111 222 23444778999965 35588888777655555555555554
Q ss_pred h-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh
Q 046888 327 K-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP 384 (1170)
Q Consensus 327 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1170)
. .+.... ....+.|..+.++.++-...+...+-..+-. ..++...-|++..+|..
T Consensus 159 ~~Kip~TI-lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 159 PQKIPNTI-LSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSL 214 (515)
T ss_pred cCcCchhh-hhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCCh
Confidence 4 333222 2233789999999998888877766332211 12333445566666643
No 275
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.63 E-value=0.095 Score=52.59 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=60.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC----CCCC-------
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET----GGPN------- 277 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----~~~~------- 277 (1170)
.+|-|++-.|-||||+|...+-+...+-..+.++.-+.. ....+-...++.+ ..+....... ....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg--~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG--GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC--CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467888889999999999998877666555556543322 1123333333332 0000000000 0000
Q ss_pred ---hhHHHHHHhcC-CCeEEEEeCCCChH-----HHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 278 ---IPAYALERLRR-TKVFMVLDDVSEFE-----QLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 278 ---l~~~l~~~L~~-kk~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
..+...+.+.. +-=|+|||++...- ..+.+...+....++..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11112233333 44599999984321 1233333333444677899999986
No 276
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.62 E-value=0.062 Score=62.16 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=37.5
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666555455679999999999999999999987766545566765
No 277
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.61 E-value=0.035 Score=56.68 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred cccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 187 LVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
+||.+..++++.+.+..-.....-|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888877766532222245779999999999999999883
No 278
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.095 Score=63.95 Aligned_cols=153 Identities=22% Similarity=0.225 Sum_probs=87.5
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++.....|-....- +..+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSKWV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcccc
Confidence 4456666666555544321 224466899999999999999999999665444321110 1001000
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCCCCCc--
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGFCPGS-- 318 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~~~gs-- 318 (1170)
+ .....+.+......+..+..|.+|.++.. .....++..++.....+
T Consensus 318 G------------------esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 318 G------------------ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred c------------------hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0 01111222223444577899999998431 23444554544333333
Q ss_pred EEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 319 RIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 319 rIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
.||-||-........ ..+ ..+.++.-+.++..+.|..+.-+
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd--~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFD--RLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccc--eEeecCCCCHHHHHHHHHHHhcc
Confidence 344455433332211 234 68999999999999999999843
No 279
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.59 E-value=0.071 Score=67.27 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHHHhhcC-------CCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 185 KGLVGLSSRIECIKSLLCTG-------LPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++|-+..++.|...+... ......+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999988877521 11245788999999999999999998773
No 280
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.56 E-value=0.16 Score=62.10 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=38.8
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...++++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44457999999999998776433 23467899999999999999998753
No 281
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.55 E-value=0.031 Score=60.84 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc------CCceEEEE
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE------FEGKCFIE 243 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 243 (1170)
.|-.+|..+-..-.++.|+|.+|.|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444555455567899999999999999999997543222 25677876
No 282
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.50 E-value=0.29 Score=59.79 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 183 SSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34679999999998888776544445678999999999999999998854
No 283
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.21 Score=57.86 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++++++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 284
>PRK04296 thymidine kinase; Provisional
Probab=95.44 E-value=0.019 Score=60.08 Aligned_cols=109 Identities=19% Similarity=0.112 Sum_probs=58.9
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCccc---CCCCChhHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLE---TGGPNIPAYALER 285 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~l~~~l~~~ 285 (1170)
.++.|+|..|.||||+|..++.+...+...++++... .....+.. .++..+...... .....+.+.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~---~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA---IDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc---ccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999999876654444444210 01111111 122222111000 011112211222
Q ss_pred hcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 286 LRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
..++.-+||+|.+.- .+++..+...+. ..|-.||+|.++.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 223456899999854 344555554432 4678899999984
No 285
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.44 E-value=0.044 Score=59.02 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=70.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEe--chhhhhcCcCHHHHHHHHHHHHhcCcccC-------CCCC
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIEN--VREEIENGVGLVHLHKQVVSLLLGERLET-------GGPN 277 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-------~~~~ 277 (1170)
...++||+|..|.||||+|+.+..-.... .+.+++.. +.. .. .........+++...+...... +..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~-~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITK-LS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhh-cc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45689999999999999999998754433 33444431 100 11 1122233445555544322111 2222
Q ss_pred hh-HHHHHHhcCCCeEEEEeCC------CChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHh
Q 046888 278 IP-AYALERLRRTKVFMVLDDV------SEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ 333 (1170)
Q Consensus 278 l~-~~l~~~L~~kk~LlVLDdv------~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1170)
.+ -.+.+.|.-++-++|.|.- .-..|.-.|+..+.. ..|-..+..|-|-.+.+.+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 22 3355778889999999964 334555555544432 2355567777777776655
No 286
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.44 E-value=0.21 Score=60.37 Aligned_cols=60 Identities=32% Similarity=0.405 Sum_probs=43.7
Q ss_pred CCCCccccchhHHHHHHHHhhc---CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 182 DSSKGLVGLSSRIECIKSLLCT---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
....+++--.+-++++..||.. +....+++.+.|++|.||||.++.+++++ .|+..=|..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3334555556778888888864 33346799999999999999999999876 345555643
No 287
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.088 Score=57.29 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=28.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH----hccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI----SNEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~ 243 (1170)
.|+|.++|++|.|||+|.+++++++ .++|.....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5899999999999999999999965 34555555543
No 288
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.14 Score=53.51 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=83.9
Q ss_pred ccccchhHHHHHHHHhh-----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcC
Q 046888 186 GLVGLSSRIECIKSLLC-----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVG 254 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 254 (1170)
++=|.+-..+++.+... .+-+..|-|.++|++|.|||.||+++++.-...| +..++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------- 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------- 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH-------
Confidence 46678888888877654 2335578899999999999999999998765443 332211
Q ss_pred HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------------HHHHHHcccCCCCC--
Q 046888 255 LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------------QLKYLVGWLDGFCP-- 316 (1170)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------------~~~~l~~~~~~~~~-- 316 (1170)
. +...-+++ +..++++..+-.-.+-+-+|.+|.++... .+-.|+...+.|.+
T Consensus 224 -e-----fvqkylge----gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 224 -E-----FVQKYLGE----GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred -H-----HHHHHhcc----CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 1 11111111 22233322222223567788889885421 13344444555544
Q ss_pred CcEEEEEe-CChh----HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 317 GSRIVVTT-RDKQ----VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 317 gsrIIiTT-R~~~----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
.-+||..| |... +++--..+ ..++.+.-+..+-.-.|.....+
T Consensus 294 nvkvimatnradtldpallrpgrld--rkiefplpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITSK 341 (408)
T ss_pred ceEEEEecCcccccCHhhcCCcccc--ccccCCCCchhhhhhhHHhhhhc
Confidence 34667655 4322 22222233 56677655555555566655433
No 289
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.33 E-value=0.038 Score=66.29 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=51.4
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHH
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALE 284 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~ 284 (1170)
.+.-++..++|++|+||||||..++++.. |. ++=+. .++......+.+.+...+... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN-----ASDeRt~~~v~~kI~~avq~~--------------s 380 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN-----ASDERTAPMVKEKIENAVQNH--------------S 380 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec-----ccccccHHHHHHHHHHHHhhc--------------c
Confidence 35678999999999999999999987532 22 22222 556666666666666655443 2
Q ss_pred Hhc--CCCeEEEEeCCCCh
Q 046888 285 RLR--RTKVFMVLDDVSEF 301 (1170)
Q Consensus 285 ~L~--~kk~LlVLDdv~~~ 301 (1170)
.+. +++.-+|+|.++-.
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 222 57888999999764
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.30 E-value=0.055 Score=56.17 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=63.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH------HHHHHHHHHhcCcccC------C
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH------LHKQVVSLLLGERLET------G 274 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~------l~~~ll~~l~~~~~~~------~ 274 (1170)
.-.+++|.|..|.|||||++.++.... ...+.+++... . .. ...... ...+++..+....... +
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~-~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-D-LA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-E-CC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 346899999999999999999987543 34555655321 0 11 111111 1111333332221111 1
Q ss_pred -CCChhHHHHHHhcCCCeEEEEeCCCC---hHH---HHHHHcccCCCCCCcEEEEEeCChhHHHH
Q 046888 275 -GPNIPAYALERLRRTKVFMVLDDVSE---FEQ---LKYLVGWLDGFCPGSRIVVTTRDKQVLRK 332 (1170)
Q Consensus 275 -~~~l~~~l~~~L~~kk~LlVLDdv~~---~~~---~~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1170)
...-+-.+.+.+...+-++++|+--. ... +..++..+.. ..|..||++|.+......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHH
Confidence 11122234566777889999998632 222 3333322211 125678888888766543
No 291
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.29 E-value=0.078 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+|.++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986554
No 292
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.27 E-value=0.43 Score=53.68 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
|...+.++=..+....+...+.. .+.|.|.|.+|+||||+|+.++.++...|
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 44444555555556666666643 24699999999999999999999886544
No 293
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.095 Score=63.18 Aligned_cols=159 Identities=20% Similarity=0.253 Sum_probs=91.5
Q ss_pred CCccccchhHHHHHHHHhhc----CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHH
Q 046888 184 SKGLVGLSSRIECIKSLLCT----GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
..+-+|.+...+++.+.|.- ..-.-.+++++|++|+|||.|++.+++.+...|-... +--+|+ .
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrD----E------- 389 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRD----E------- 389 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCcccc----H-------
Confidence 34578999999999998863 2233479999999999999999999998877663211 111221 1
Q ss_pred HHHHHHHhcCcccCCCCChhHHHH---HHhcCCCeEEEEeCCCChH------HHHHHHcccCCCC-------------CC
Q 046888 260 KQVVSLLLGERLETGGPNIPAYAL---ERLRRTKVFMVLDDVSEFE------QLKYLVGWLDGFC-------------PG 317 (1170)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~l~~~l~---~~L~~kk~LlVLDdv~~~~------~~~~l~~~~~~~~-------------~g 317 (1170)
+++-+..... ...+.-++. ...+.+.=+++||.+|... -..+|+..++.-. .=
T Consensus 390 ----AEIRGHRRTY-IGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 390 ----AEIRGHRRTY-IGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ----HHhccccccc-cccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 1111221111 111222222 2334567789999996522 1233333332211 12
Q ss_pred cEE-EEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 318 SRI-VVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 318 srI-IiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
|.| .|||-+. +-....-.+...++++.+-+.+|-+++-.+|.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444 4555443 20111112334789999999999888877775
No 294
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.24 E-value=0.023 Score=58.82 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=32.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...+|.+.|+.|.||||+|+.++.++..++...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999988887777773
No 295
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.22 E-value=0.095 Score=52.17 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
.-.+++|.|..|.|||||++.+..... ...+.+++..... +.--+.+. ....-+-.+.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~-i~~~~~lS-----------------~G~~~rv~laral 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVK-IGYFEQLS-----------------GGEKMRLALAKLL 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEE-EEEEccCC-----------------HHHHHHHHHHHHH
Confidence 346899999999999999999987543 2344455431100 10000000 0011112233566
Q ss_pred cCCCeEEEEeCCC---ChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHh
Q 046888 287 RRTKVFMVLDDVS---EFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ 333 (1170)
Q Consensus 287 ~~kk~LlVLDdv~---~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1170)
..++=++++|+-. +.+..+.+...+... +..||++|.+.......
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 6777889999863 222222222222211 24688888877655443
No 296
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.19 E-value=0.03 Score=55.87 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=30.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.+|-|.|.+|.||||||+++..++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58999999999999999999999988776666664
No 297
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.18 Score=58.51 Aligned_cols=148 Identities=21% Similarity=0.281 Sum_probs=82.0
Q ss_pred CccccchhHHHHHHH---Hhhc-------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc---
Q 046888 185 KGLVGLSSRIECIKS---LLCT-------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN--- 251 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~---~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~--- 251 (1170)
++.-|.|...++|++ +|.. +..=.+-|.++|++|.|||-||++++-+..--| |...-.| ..+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSE-FdEm~V 378 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSE-FDEMFV 378 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccc-hhhhhh
Confidence 345677766655554 4432 112256799999999999999999987543222 2221111 000
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCCCCCc
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGFCPGS 318 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~~~gs 318 (1170)
..+.. .+++...+.-..-+++|.+|.++.. ..+..|+..++.|.+..
T Consensus 379 GvGAr--------------------RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe 438 (752)
T KOG0734|consen 379 GVGAR--------------------RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE 438 (752)
T ss_pred cccHH--------------------HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC
Confidence 11111 1222222333456899999988542 12677888888876655
Q ss_pred EEEE--EeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 319 RIVV--TTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 319 rIIi--TTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
-||| .|--++.+... ..+ ..+.|+.-+-.--.++|..|.
T Consensus 439 GiIvigATNfpe~LD~AL~RPGRFD--~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 439 GIIVIGATNFPEALDKALTRPGRFD--RHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred ceEEEeccCChhhhhHHhcCCCccc--eeEecCCCCcccHHHHHHHHH
Confidence 4443 33333333322 122 456666666666677777776
No 298
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.18 E-value=0.068 Score=54.59 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=42.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC--
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR-- 288 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~-- 288 (1170)
+.|.|.+|.|||++|.++... .....+|+. .....+.. +++.+..........-...+....+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a-----t~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA-----TAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE-----ccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999998765 234566665 33334332 3444333222221111112222233344432
Q ss_pred CCeEEEEeCC
Q 046888 289 TKVFMVLDDV 298 (1170)
Q Consensus 289 kk~LlVLDdv 298 (1170)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347899987
No 299
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.13 Score=63.67 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=84.5
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-C-----CceEEEEechhhhhcCcCHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-F-----EGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-----~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
+..+||+.++.++.+.|.....+.. .++|.+|+|||++|.-++.++.+. - +..++--++.. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~-L--------- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS-L--------- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH-H---------
Confidence 4589999999999999975443333 478999999999999999987543 1 12223222211 0
Q ss_pred HHHHHHHHhcCcccCC-CCChhHHHHHHhcCCCeEEEEeCCCCh-----------HHHHHHHcccCCCCCCcEEEEEeCC
Q 046888 259 HKQVVSLLLGERLETG-GPNIPAYALERLRRTKVFMVLDDVSEF-----------EQLKYLVGWLDGFCPGSRIVVTTRD 326 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~-~~~l~~~l~~~L~~kk~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR~ 326 (1170)
..+..-... .+.++..+.+.-+..++.+.+|.+... +...-|...+. .|.--.|-.||-+
T Consensus 238 -------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~ 309 (786)
T COG0542 238 -------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLD 309 (786)
T ss_pred -------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHH
Confidence 001110001 111222222222345899999987331 11222222221 2222245566655
Q ss_pred hhH--HHH--hCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 327 KQV--LRK--QGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 327 ~~v--~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
+-- ... .-....+.+.|+..+.+++..++.-..
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 411 000 001123789999999999999987653
No 300
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.09 E-value=0.1 Score=54.71 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=36.8
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGE 269 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~ 269 (1170)
++|.++|+.|+||||.+-+++.+.+.+-..+.+++. -....+...-++.+.+.+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~----D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA----DTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE----STSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecC----CCCCccHHHHHHHHHHHhccc
Confidence 689999999999999999888877666444555541 111233444455566666544
No 301
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.09 E-value=0.026 Score=67.04 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCccccchhHHHHHHHHhh----cCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 184 SKGLVGLSSRIECIKSLLC----TGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..+++|++..++++.+.|. .....-+++.++|++|.||||||+.+++-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999998882 33445689999999999999999999986644
No 302
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.08 E-value=0.018 Score=55.82 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=20.5
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 046888 211 VGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
|+|.|.+|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 303
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.07 E-value=0.11 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=25.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...+++++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 304
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.072 Score=56.01 Aligned_cols=54 Identities=28% Similarity=0.458 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHHhh-----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEech
Q 046888 188 VGLSSRIECIKSLLC-----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVR 246 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 246 (1170)
=|=..++++|.+... .+-+..+-|.++|++|.|||-+|++++|+- ..||+..++
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvig 244 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIG 244 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehh
Confidence 344555666665443 233456778999999999999999999875 357776443
No 305
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.02 E-value=0.074 Score=53.43 Aligned_cols=88 Identities=28% Similarity=0.283 Sum_probs=44.6
Q ss_pred EEecCCChHHHHHHHHHHHHhccCCceEEEE---echhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC-
Q 046888 213 IWGMGGIGKTTIVKALFNQISNEFEGKCFIE---NVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR- 288 (1170)
Q Consensus 213 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~- 288 (1170)
|.|++|+||||+|+.++.++. | ..++ -+++...... .+..++...+. .......+.+.+.+.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s---~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDS---ELGKQIQEYLD-NGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTS---HHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhh---HHHHHHHHHHH-hhccchHHHHHHHHHHHHhhh
Confidence 689999999999999998752 2 3332 1222121111 11122222222 11111222333344455543
Q ss_pred -CCeEEEEeCCC-ChHHHHHHHc
Q 046888 289 -TKVFMVLDDVS-EFEQLKYLVG 309 (1170)
Q Consensus 289 -kk~LlVLDdv~-~~~~~~~l~~ 309 (1170)
..--+|||+.- +.+|.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 24567899994 5566666654
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.2 Score=57.56 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=47.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccC--CceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC-CCCChhHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEF--EGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET-GGPNIPAYAL 283 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~l~~~l~ 283 (1170)
...+++++|+.|+||||++.+++.+...++ ..+.++. .. ....+...-++.+...+....... ....+...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D---~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l- 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TD---SYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL- 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cc---cccccHHHHHHHHHHHcCCceEecCCcccHHHHH-
Confidence 357999999999999999999998765443 3344543 11 111222333333333333222111 222333222
Q ss_pred HHhcCCCeEEEEeCCC
Q 046888 284 ERLRRTKVFMVLDDVS 299 (1170)
Q Consensus 284 ~~L~~kk~LlVLDdv~ 299 (1170)
..+.++ =++++|...
T Consensus 211 ~~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 AELRNK-HMVLIDTIG 225 (374)
T ss_pred HHhcCC-CEEEEcCCC
Confidence 344554 556689884
No 307
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.01 E-value=0.037 Score=59.54 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=47.1
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC--
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR-- 288 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~-- 288 (1170)
|.|.|++|+||||+|+.+++++. +....-=.-+++.+.....+....++ ........+.+.+...+.+++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~----~~~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQK----VVTSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHH----HHHcCCcCCHHHHHHHHHHHHHhhc
Confidence 88999999999999999988653 22111111122212211122222222 22222222223333344444432
Q ss_pred --CCeEEEEeCC-CChHHHHHHH
Q 046888 289 --TKVFMVLDDV-SEFEQLKYLV 308 (1170)
Q Consensus 289 --kk~LlVLDdv-~~~~~~~~l~ 308 (1170)
...-+|||.. .+..|.+.+.
T Consensus 83 ~~~~~g~iLDGfPRt~~Qa~~l~ 105 (229)
T PTZ00088 83 DDCFKGFILDGFPRNLKQCKELG 105 (229)
T ss_pred cccCceEEEecCCCCHHHHHHHH
Confidence 3445899998 5666766654
No 308
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.99 E-value=0.046 Score=55.73 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
.-.+++|.|..|.|||||.+.++.... ...+.+++.... ... ........ ..+..-..-.+.+.-+-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~--~~~-~~~~~~~~---~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE--VSF-ASPRDARR---AGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE--CCc-CCHHHHHh---cCeEEEEecCHHHHHHHHHHHHH
Confidence 346899999999999999999986542 335556654211 110 11111000 00000000001111222344666
Q ss_pred cCCCeEEEEeCCCC---hHHHHHHHcccCCC-CCCcEEEEEeCChhHHHH
Q 046888 287 RRTKVFMVLDDVSE---FEQLKYLVGWLDGF-CPGSRIVVTTRDKQVLRK 332 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~---~~~~~~l~~~~~~~-~~gsrIIiTTR~~~v~~~ 332 (1170)
..++-++++|+-.. .+..+.+...+... ..|..||++|.+...+..
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 77888899998632 22222222222111 246678889888765444
No 309
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.0014 Score=69.25 Aligned_cols=86 Identities=23% Similarity=0.230 Sum_probs=59.0
Q ss_pred CCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc--ccccCC
Q 046888 754 IEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLP--VSIKQL 831 (1170)
Q Consensus 754 l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l 831 (1170)
+.+.+.|++.+|.+.+. ++ ...|+.|+.|.|+-|+|+.+. .+..+++|+.|+|..|.|.++- ..+.++
T Consensus 18 l~~vkKLNcwg~~L~DI-----si----c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SI----CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH-----HH----HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 44566677777776542 11 456777888888888777653 3566778888888888777653 356788
Q ss_pred CCCCEEEecCCCCCCCCC
Q 046888 832 SRLKRLDLSNCSMLQSIP 849 (1170)
Q Consensus 832 ~~L~~L~L~~c~~l~~lp 849 (1170)
|+|+.|-|..|+-.+.-+
T Consensus 88 psLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAG 105 (388)
T ss_pred chhhhHhhccCCcccccc
Confidence 888888888887655443
No 310
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.91 E-value=0.022 Score=59.94 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
||+|.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988643
No 311
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.88 E-value=0.42 Score=60.35 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 184 SKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+.++|....+.++.+.+..-...-.-|.|+|..|.||+++|+++.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 3457788777777666554322233448899999999999999998753
No 312
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.085 Score=62.05 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=77.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
..-|.+||++|.|||-||++|+++-.-.| +. +.. ..++... .++ ....+++...+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VKG--------PELlNkY----VGE----SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VKG--------PELLNKY----VGE----SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ecC--------HHHHHHH----hhh----HHHHHHHHHHHhhc
Confidence 45688999999999999999999876554 32 111 1122211 111 11222322223334
Q ss_pred CCCeEEEEeCCCCh-------------HHHHHHHcccCCCC--CCcEEEEEeCChhHH-HH----hCCCCcceEeecCCC
Q 046888 288 RTKVFMVLDDVSEF-------------EQLKYLVGWLDGFC--PGSRIVVTTRDKQVL-RK----QGVKDEHVYEVERLN 347 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~~--~gsrIIiTTR~~~v~-~~----~~~~~~~~~~l~~L~ 347 (1170)
.-++.|.+|.++.. .-+..|+..++... .|--||-.|-.+++. .. -..+ ...-|+.-+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlD--k~LyV~lPn 680 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLD--KLLYVGLPN 680 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccC--ceeeecCCC
Confidence 67899999998541 22566776666542 344455444333332 21 1234 788899999
Q ss_pred HhHHHHHHHHHHh
Q 046888 348 EDEGLELFYKYAF 360 (1170)
Q Consensus 348 ~~ea~~Lf~~~af 360 (1170)
.+|-.+++....-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988874
No 313
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.88 E-value=0.1 Score=60.14 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=63.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
...|.|.|..|.||||+++.+.+.+.......++.. .+.. +.........+.......+.....+.+...|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti------Edp~--E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI------EDPI--EYVHRNKRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE------cCCh--hhhccCccceEEccccCCCCcCHHHHHHHhhc
Confidence 367999999999999999999887765555555442 1111 10000000000000011122345666777888
Q ss_pred CCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 288 RTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
..+=.|++|.+.+.+......... ..|-.|+.|.-..
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 999999999999887766544322 2344455555443
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.83 E-value=0.12 Score=53.28 Aligned_cols=114 Identities=24% Similarity=0.194 Sum_probs=60.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEe--chhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIEN--VREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
-.+++|.|..|.|||||++.++.-.. ...+.+++.. +.- ..+...+.. ...-+-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~-~~q~~~LSg-----------------Gq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVY-KPQYIDLSG-----------------GELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEE-EcccCCCCH-----------------HHHHHHHHHHH
Confidence 45899999999999999999886442 2234444421 000 111111110 11112233466
Q ss_pred hcCCCeEEEEeCCCC---hHH---HHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEeec
Q 046888 286 LRRTKVFMVLDDVSE---FEQ---LKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEVE 344 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~---~~~---~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~ 344 (1170)
+..++-++++|.--. ... +..++..+.. ..+..||++|.+....... .+ .++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d--~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SD--RIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CC--EEEEEc
Confidence 677888999998632 222 2222222211 1235678888877665543 22 455544
No 315
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.084 Score=59.67 Aligned_cols=49 Identities=24% Similarity=0.343 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+.++.+.|-.+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 4566667754433457899999999999999999999998776 677765
No 316
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.76 E-value=0.067 Score=57.06 Aligned_cols=44 Identities=30% Similarity=0.377 Sum_probs=35.7
Q ss_pred HhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 200 LLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 200 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+|..+-..-+++.|+|.+|.|||++|.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44445456789999999999999999999887766667788886
No 317
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.74 E-value=0.25 Score=54.50 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=64.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC---C---CC-Ch
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET---G---GP-NI 278 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~---~~-~l 278 (1170)
.+.+-++|+|..|.|||||.+.++..++.. .+.+++... . +. ...-..++......-.... . .+ ..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~-v~----~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-K-VG----IVDERSEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-E-ee----cchhHHHHHHHhcccccccccccccccccch
Confidence 345789999999999999999999876543 334444210 0 11 0000112221111100000 0 00 00
Q ss_pred -hHHHHHHh-cCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHH
Q 046888 279 -PAYALERL-RRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLR 331 (1170)
Q Consensus 279 -~~~l~~~L-~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~ 331 (1170)
...+...+ ...+=++++|.+...+.+..+...+. .|..||+||-+..+..
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 11122222 25788999999988877777765553 5778999998766643
No 318
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.73 E-value=0.18 Score=53.10 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET 273 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 273 (1170)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++..-+ .....+..........
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~----------~Aa~~L~~~~~~~a~T- 72 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN----------KAAKELREKTGIEAQT- 72 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH----------HHHHHHHHHHTS-EEE-
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH----------HHHHHHHHhhCcchhh-
Confidence 3444555532 3368899999999999999999887766533334443111 1112222222211100
Q ss_pred CCCChhHHHHHH---------hcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh
Q 046888 274 GGPNIPAYALER---------LRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDKQ 328 (1170)
Q Consensus 274 ~~~~l~~~l~~~---------L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1170)
+...+... -..++-+||+|++... .++..+...... .|.|+|+.--..+
T Consensus 73 ----i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 73 ----IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ----HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ----HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 00000000 0123458999998653 456776655542 5778888755443
No 319
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.033 Score=58.26 Aligned_cols=30 Identities=47% Similarity=0.601 Sum_probs=27.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
+.+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988765
No 320
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.70 E-value=0.12 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
++.++|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.61 Score=53.31 Aligned_cols=38 Identities=32% Similarity=0.408 Sum_probs=29.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999999999999887654433455554
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.64 E-value=0.26 Score=49.88 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=64.6
Q ss_pred HHHHhhccceEEEEeccCcccCCCcHHHHHHHHHhhhcCCcEEEEEEeeeCccccccccccHHHHHHHHHHHhhhhHHHH
Q 046888 56 LLNAIEGSKISVIIFSKDYASSKWCPNELVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAETV 135 (1170)
Q Consensus 56 i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~~~~~~~~~~~v~pif~~v~ps~vr~~~g~~~~~~~~~~~~~~~~~~~v 135 (1170)
+.++++++++.+.|+......+.. -.++.+.+... ..+..++.|+=++|-.+ .+.+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~----------------------~~~~ 57 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVP----------------------TWVT 57 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCC----------------------HHHH
Confidence 567899999999998865432221 24555555432 22345666765666310 1123
Q ss_pred HHHHHHHhhcccCCCCcccCCCchhHHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcCC-CCeEEEEEE
Q 046888 136 QKWRDVMTQTSYLSGHESTKIRPEAMLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTGL-PDVRIVGIW 214 (1170)
Q Consensus 136 ~~w~~aL~~v~~~~g~~~~~~~~e~~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~ 214 (1170)
+.|...+.+......+ +.....=.|.+.-++.+.+.+.... .....|+++
T Consensus 58 ~~~~~~~~~~~~~~~~-----------------------------~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~ 108 (157)
T cd01858 58 ARWVKILSKEYPTIAF-----------------------------HASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFI 108 (157)
T ss_pred HHHHHHHhcCCcEEEE-----------------------------EeeccccccHHHHHHHHHHHHhhhccccceEEEEE
Confidence 4555555432110000 0000011244444444544432111 223568899
Q ss_pred ecCCChHHHHHHHHHH
Q 046888 215 GMGGIGKTTIVKALFN 230 (1170)
Q Consensus 215 G~gGiGKTtLA~~v~~ 230 (1170)
|++|+|||||...+..
T Consensus 109 G~~nvGKStliN~l~~ 124 (157)
T cd01858 109 GYPNVGKSSIINTLRS 124 (157)
T ss_pred eCCCCChHHHHHHHhc
Confidence 9999999999998865
No 323
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.64 E-value=0.096 Score=58.97 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=38.0
Q ss_pred HHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..|-.+|. .+-+.-+++-|+|++|+||||||..++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555665 45566789999999999999999998887666666777875
No 324
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.64 E-value=0.083 Score=57.48 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..|-++|..+-..-.++.|+|.+|.|||+||.++......+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455566555566789999999999999999999765433445666765
No 325
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.62 E-value=0.071 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
++.|.|.+|.||||+|..+..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998764
No 326
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.68 Score=48.83 Aligned_cols=185 Identities=18% Similarity=0.300 Sum_probs=95.3
Q ss_pred ccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcC
Q 046888 186 GLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVG 254 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 254 (1170)
.+=|.+..+++|.+.+-. +-...+-|..+|++|.|||-+|++.+.+-...|-. . .+
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK----------L---Ag 238 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK----------L---AG 238 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH----------h---cc
Confidence 455666666666554421 11235668899999999999999988765443311 0 00
Q ss_pred HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCCCCc
Q 046888 255 LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFCPGS 318 (1170)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~~gs 318 (1170)
.++.....+. +...++++..-.-...+.+|.+|.++.. ...-.|+..++.|.+.-
T Consensus 239 -----PQLVQMfIGd----GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~ 309 (424)
T KOG0652|consen 239 -----PQLVQMFIGD----GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD 309 (424)
T ss_pred -----hHHHhhhhcc----hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc
Confidence 0111111111 1111121111112345788888887331 11344566677776554
Q ss_pred --EEEEEeCCh-----hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 319 --RIVVTTRDK-----QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNH-RPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 319 --rIIiTTR~~-----~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
+||..|..- .+++.-..+ ..++.+--+.+...+++.-|.-+... +.-.++++++.--..-|.--.|+-+=
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLD--RKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVE 387 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLD--RKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVE 387 (424)
T ss_pred ceEEEeecccccccCHHHhhccccc--ccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehh
Confidence 556555322 333443444 56777666666666677767655443 44567776654332222223344444
Q ss_pred HHHh
Q 046888 391 GSSL 394 (1170)
Q Consensus 391 g~~L 394 (1170)
|+++
T Consensus 388 AGMi 391 (424)
T KOG0652|consen 388 AGMI 391 (424)
T ss_pred hhHH
Confidence 4443
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.59 E-value=0.18 Score=60.16 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566667555555679999999999999999999987764434566765
No 328
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.58 E-value=2.7 Score=45.33 Aligned_cols=226 Identities=16% Similarity=0.243 Sum_probs=122.4
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc------cCCceEEEEechhh-----hh---
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN------EFEGKCFIENVREE-----IE--- 250 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~-----~~--- 250 (1170)
+.+.++++.-.++.++.. ..+..-..++|+.|.||-|.+..+.+++-+ +-+..-|....... ++
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 456777777777777664 345778899999999999999988886532 22333344321110 00
Q ss_pred -------cCcCHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCe-EEEEeCCCCh--HHHHHHHcccCCCCCCcE
Q 046888 251 -------NGVGLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKV-FMVLDDVSEF--EQLKYLVGWLDGFCPGSR 319 (1170)
Q Consensus 251 -------~~~~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~-LlVLDdv~~~--~~~~~l~~~~~~~~~gsr 319 (1170)
+....+ .+.++++.+....... +.-..+.+ ++|+-.++.. +.-.+|..........+|
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-----------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-----------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 000001 1222333332211111 11122333 4555555442 223334433334456678
Q ss_pred EEEE----eCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHHHHH-
Q 046888 320 IVVT----TRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVLGSS- 393 (1170)
Q Consensus 320 IIiT----TR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg~~- 393 (1170)
+|+. ||--...+.- .-.+.++..+++|-...++.-+-+..-. ...+++.+|+++++|+-- ||-.+-..
T Consensus 160 lIl~cns~SriIepIrSR----Cl~iRvpaps~eeI~~vl~~v~~kE~l~--lp~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSR----CLFIRVPAPSDEEITSVLSKVLKKEGLQ--LPKELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred EEEEecCcccchhHHhhh----eeEEeCCCCCHHHHHHHHHHHHHHhccc--CcHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7764 3322222221 1568999999999999998887443322 226788999999999742 33222111
Q ss_pred hcC---------CCHHHHHHHHHHHhh----cCChhhHHHHHHHHHhcC
Q 046888 394 LQQ---------KSKQDWENVLDNLKQ----ISGASRIYKLLRISYEEL 429 (1170)
Q Consensus 394 L~~---------~~~~~w~~~l~~l~~----~~~~~~i~~~l~~sy~~L 429 (1170)
+.+ ...-+|+-++.+... ......+.++-..-|+-|
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 111 245689988877543 122245666666666655
No 329
>PRK08356 hypothetical protein; Provisional
Probab=94.56 E-value=0.17 Score=53.20 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEEecCCChHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALF 229 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1170)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 330
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.55 E-value=0.2 Score=51.90 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=26.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
.-.+++|.|..|.|||||++.++..... ..+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITL 61 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEE
Confidence 3468999999999999999999875432 2344444
No 331
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.55 E-value=0.06 Score=63.28 Aligned_cols=46 Identities=30% Similarity=0.250 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..++||+..++.+...+..+. -|.|.|.+|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 368999999999887775443 4899999999999999999986643
No 332
>PRK09354 recA recombinase A; Provisional
Probab=94.49 E-value=0.094 Score=59.53 Aligned_cols=50 Identities=30% Similarity=0.375 Sum_probs=39.2
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...|-.+|. .+-+.-+++-|+|.+|+||||||.+++......-..++|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 345556665 55566789999999999999999998887766666778886
No 333
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.49 E-value=0.086 Score=59.33 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=37.5
Q ss_pred HHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..|-.+|. .+-+.-+++-|+|.+|+||||||..++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555665 45567789999999999999999998887666556667775
No 334
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.47 E-value=0.25 Score=50.06 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=38.9
Q ss_pred CCChhHHHHHHhcCCCeEEEEeC----CCChHHHHHH--HcccCCCCCCcEEEEEeCChhHHHHhC
Q 046888 275 GPNIPAYALERLRRTKVFMVLDD----VSEFEQLKYL--VGWLDGFCPGSRIVVTTRDKQVLRKQG 334 (1170)
Q Consensus 275 ~~~l~~~l~~~L~~kk~LlVLDd----v~~~~~~~~l--~~~~~~~~~gsrIIiTTR~~~v~~~~~ 334 (1170)
.++-+..+.+.+-+++-+++-|. +|..-.|+-+ ...++ ..|..||++|-|.++...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 33334456677788999999994 5544444433 33333 46899999999998877764
No 335
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.46 E-value=0.031 Score=47.69 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+|+|.|.+|.||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 336
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.46 E-value=0.0088 Score=72.77 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=7.8
Q ss_pred CCEEEecCCCCCC
Q 046888 834 LKRLDLSNCSMLQ 846 (1170)
Q Consensus 834 L~~L~L~~c~~l~ 846 (1170)
|+.|+++.|...+
T Consensus 403 l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 403 LRVLNLSDCRLVT 415 (482)
T ss_pred cceEecccCcccc
Confidence 6666666665433
No 337
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.17 Score=54.21 Aligned_cols=52 Identities=37% Similarity=0.464 Sum_probs=40.1
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
.++=|.++.+++|.+.... +-...+-|-++|.+|.|||-||++|+|+-+.-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3466788999998877642 113356788999999999999999999776555
No 338
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.45 E-value=0.13 Score=56.86 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..|.|+|.+|.||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999877653
No 339
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.44 E-value=0.006 Score=74.26 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=44.0
Q ss_pred cccceeecCCCCCCCcc---CCCCCCCCccccccccCC-cccccCCCcccccccccccccccceeeccccccccc-cccc
Q 046888 635 AFKLKSINLSHSQYLIR---IPDPSEAPNLERINLWNC-THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR-VSTS 709 (1170)
Q Consensus 635 l~~L~~L~Ls~~~~l~~---~p~~~~l~~L~~L~L~~c-~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~ 709 (1170)
+++|+.|.+..+..+.. .+....+++|+.|++++| ....... .........+++|+.|++++|..... .-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP---LLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch---hHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 56677777777655543 233556677777777663 1110000 00111233446677777776653221 1111
Q ss_pred cc-CCCcccEEecCCCCC
Q 046888 710 IC-KLKSLIWLCLNECLN 726 (1170)
Q Consensus 710 i~-~L~~L~~L~l~~c~~ 726 (1170)
+. .+++|+.|.+.+|..
T Consensus 264 l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSN 281 (482)
T ss_pred HHhhCCCcceEccCCCCc
Confidence 21 255666666666643
No 340
>PTZ00301 uridine kinase; Provisional
Probab=94.43 E-value=0.036 Score=58.81 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=24.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875443
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.41 E-value=0.53 Score=55.66 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh--ccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS--NEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 243 (1170)
.++++++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999887765 3333455554
No 342
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.27 Score=59.34 Aligned_cols=150 Identities=22% Similarity=0.266 Sum_probs=88.8
Q ss_pred CCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC---ceEEEEechhhh
Q 046888 183 SSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE---GKCFIENVREEI 249 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~ 249 (1170)
...+..|.+...+++.+.++. +..=.+-|.++|++|.|||.||++++.+..-.|- +.-|+. .
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe-----m 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-----M 222 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-----h
Confidence 345678988888887776652 1122566999999999999999999986543331 111111 0
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC---------------hH-HHHHHHcccCC
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE---------------FE-QLKYLVGWLDG 313 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~---------------~~-~~~~l~~~~~~ 313 (1170)
--.. +...+++...+..++-+.++++|.++. .+ .+..++...+.
T Consensus 223 fVGv--------------------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 223 FVGV--------------------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred hcCC--------------------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 0011 222233333355566788999998743 12 26677777777
Q ss_pred CCCCcEEE-E--EeCChhHHHH-----hCCCCcceEeecCCCHhHHHHHHHHHHh
Q 046888 314 FCPGSRIV-V--TTRDKQVLRK-----QGVKDEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 314 ~~~gsrII-i--TTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
++.+.-|| + |.|. +|+.. -+.+ ..+.++.-+-....+++.-|+-
T Consensus 283 F~~~~gviviaaTNRp-dVlD~ALlRpgRFD--RqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 283 FGGNEGVIVIAATNRP-DVLDPALLRPGRFD--RQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred CCCCCceEEEecCCCc-ccchHhhcCCCCcc--eeeecCCcchhhHHHHHHHHhh
Confidence 76433233 2 3343 33322 2334 5677777777777788877763
No 343
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.40 E-value=0.78 Score=55.65 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
..++|....+.++...+..-...-..|.|.|.+|.|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899998888887776543344556899999999999999999874
No 344
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.12 Score=55.80 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHHHHhcCCCeEEEEeC----CCC--hHHHHHHHcccCCCCCCcEEEEEeCChhHHHHh
Q 046888 281 YALERLRRTKVFMVLDD----VSE--FEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ 333 (1170)
Q Consensus 281 ~l~~~L~~kk~LlVLDd----v~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1170)
.+.+.|.+++=|++||. ||. ...+-.++..+.. .|..||++|-|-......
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh
Confidence 45577889999999995 333 3345556655543 388899999987665543
No 345
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.38 E-value=0.2 Score=55.40 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCccc
Q 046888 193 RIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLE 272 (1170)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 272 (1170)
.++.+..++.. ...+|.|.|..|.||||+++++.+.+...-...+.+.+-.| ..+... .++ +-..
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E-----~~~~~~-----~q~--~v~~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE-----YQIPGI-----NQV--QVNE 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce-----ecCCCc-----eEE--EeCC
Confidence 34445555532 23589999999999999999998876542223344433222 111000 000 0001
Q ss_pred CCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHc
Q 046888 273 TGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVG 309 (1170)
Q Consensus 273 ~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~ 309 (1170)
.........+...|+..+=.++++++.+.+....+..
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 1122455666788888899999999999887655443
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.38 E-value=0.12 Score=52.94 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=62.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechh--hhhcCcCHH--HHHHHHHHHHhcCcccC-CCCChhHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVRE--EIENGVGLV--HLHKQVVSLLLGERLET-GGPNIPAY 281 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~--~~~~~~~~~--~l~~~ll~~l~~~~~~~-~~~~l~~~ 281 (1170)
.-.+++|+|..|.|||||++.++..... ..+.+++...+. .+.+..... .+.+.+... ....- +...-+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3468999999999999999999875432 233333321000 011111111 222222110 11111 22222333
Q ss_pred HHHHhcCCCeEEEEeCCCC---hHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEee
Q 046888 282 ALERLRRTKVFMVLDDVSE---FEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEV 343 (1170)
Q Consensus 282 l~~~L~~kk~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l 343 (1170)
+.+.+..++=++++|+--. .+..+.+...+... +..||++|.+..... . .+ +++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~-~d--~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-F-HD--RVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-h-CC--EEEEE
Confidence 4566777888899997532 22222222222222 356888888776543 2 33 55554
No 347
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.35 E-value=0.12 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.|.++|++|.||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887544
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.33 E-value=0.12 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.-.+++|+|..|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998863
No 349
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.32 E-value=1.2 Score=54.38 Aligned_cols=50 Identities=16% Similarity=0.041 Sum_probs=37.0
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
...++++|....++++.+.+..-...-.-|.|+|..|.||+++|+++...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34568999998888877665422222344889999999999999998654
No 350
>PRK06762 hypothetical protein; Provisional
Probab=94.30 E-value=0.037 Score=56.63 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
++|.|+|++|.||||+|+.+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 351
>PRK08233 hypothetical protein; Provisional
Probab=94.27 E-value=0.033 Score=57.84 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+|+|.|.+|.||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999988764
No 352
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.049 Score=65.14 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=43.8
Q ss_pred ccccchhHHHHHHHHhhc----CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC
Q 046888 186 GLVGLSSRIECIKSLLCT----GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE 237 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1170)
.-+|+++-.+++.+++.- ++-+-++++.+|++|+|||.+|+.++..+-.+|-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 468999999999988863 3455789999999999999999999998866653
No 353
>PRK03839 putative kinase; Provisional
Probab=94.24 E-value=0.034 Score=57.78 Aligned_cols=24 Identities=42% Similarity=0.673 Sum_probs=21.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|.|.|++|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 354
>PRK04040 adenylate kinase; Provisional
Probab=94.24 E-value=0.044 Score=57.20 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=23.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|+|++|.||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.23 E-value=0.041 Score=58.68 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 356
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.23 E-value=0.12 Score=61.61 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666677655566789999999999999999999887655434566765
No 357
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.22 E-value=0.029 Score=53.47 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCc
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISNEFEG 238 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 238 (1170)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 358
>PRK00625 shikimate kinase; Provisional
Probab=94.15 E-value=0.036 Score=56.92 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|.|+||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 359
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.14 E-value=0.15 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 360
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.01 E-value=0.048 Score=58.06 Aligned_cols=28 Identities=39% Similarity=0.707 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+...+|+|+|.+|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999988654
No 361
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.01 E-value=0.035 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccC
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988766543
No 362
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.99 E-value=0.08 Score=57.33 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.....+|+|.|..|.|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999877654
No 363
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.97 E-value=0.86 Score=51.51 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=24.5
Q ss_pred HhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 200 LLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 200 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.|..+-+--..|+|||+.|+||+||.+.+.-+
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcC
Confidence 34444444567999999999999999988753
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.96 E-value=0.053 Score=60.41 Aligned_cols=127 Identities=20% Similarity=0.158 Sum_probs=70.9
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVS 264 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1170)
+.+.-.....+++.++|...-.....|.|.|..|.||||+++++...+...-...+-+.+..|..........
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~------- 176 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQ------- 176 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEE-------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEE-------
Confidence 4444444445666666654323457899999999999999999998776652333444433221100000000
Q ss_pred HHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEE-EEEeCC
Q 046888 265 LLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRI-VVTTRD 326 (1170)
Q Consensus 265 ~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrI-IiTTR~ 326 (1170)
... ..+.....+.+...|+..+=.+|++.+.+.+..+.+. .. ..|..+ +-|...
T Consensus 177 ---~~~-~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~-a~---~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 177 ---IQT-RRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQ-AA---NTGHLGSLTTLHA 231 (270)
T ss_dssp ---EEE-ETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHH-HH---HTT-EEEEEEEE-
T ss_pred ---EEe-ecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHH-hh---ccCCceeeeeeec
Confidence 000 0134455666778888888899999999888776643 22 245566 555443
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.94 E-value=0.23 Score=60.00 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=70.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCc---------eEEEEechh----------hhhcCc-CH-HHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEG---------KCFIENVRE----------EIENGV-GL-VHLHKQVVSLL 266 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---------~~~~~~~~~----------~~~~~~-~~-~~l~~~ll~~l 266 (1170)
-..|+|+|..|+|||||.+.+....... .+ ..|+..-+. .+.+.+ +. ..-.+..+..+
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 3469999999999999999997654322 11 112211110 011111 10 22233333333
Q ss_pred hcCcccC--------CCCChhHHHHHHhcCCCeEEEEeCC------CChHHHHHHHcccCCCCCCcEEEEEeCChhHHHH
Q 046888 267 LGERLET--------GGPNIPAYALERLRRTKVFMVLDDV------SEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRK 332 (1170)
Q Consensus 267 ~~~~~~~--------~~~~l~~~l~~~L~~kk~LlVLDdv------~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 332 (1170)
+-..... +.+..+-.+...+-.++=++|||.= +..++++..+..+ +| .||+.|-|+.....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHh
Confidence 3222211 2233344445556678899999954 3344454444333 34 48888999988887
Q ss_pred hCCCCcceEeecC
Q 046888 333 QGVKDEHVYEVER 345 (1170)
Q Consensus 333 ~~~~~~~~~~l~~ 345 (1170)
.. + .++.+.+
T Consensus 502 va-~--~i~~~~~ 511 (530)
T COG0488 502 VA-T--RIWLVED 511 (530)
T ss_pred hc-c--eEEEEcC
Confidence 64 3 6777765
No 366
>PRK14528 adenylate kinase; Provisional
Probab=93.94 E-value=0.16 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+.|.|.|++|.||||+|+.++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 367
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.48 Score=56.48 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..++|+|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998876544
No 368
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.88 E-value=0.16 Score=55.97 Aligned_cols=57 Identities=28% Similarity=0.375 Sum_probs=43.0
Q ss_pred HHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 197 IKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
|-.+|..+-+.-+++=|+|+.|.||||+|.+++-..+..-..++|++ ....+++.++
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID-----tE~~l~p~r~ 105 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID-----TEHALDPERA 105 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe-----CCCCCCHHHH
Confidence 34455455567789999999999999999998887777767889997 4444555544
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.88 E-value=0.38 Score=53.62 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEEechhhhhcCcCHHHHHHHHHHHHh
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1170)
....++.|.|.+|+||||+|.+++.....+ -..++|+. .. .....+...+...+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-----~E--~~~~~~~~r~~~~~~ 83 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-----LE--EPVVRTARRLLGQYA 83 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-----cc--cCHHHHHHHHHHHHh
Confidence 345688999999999999999998876544 34566665 22 234455555555443
No 370
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.22 Score=51.21 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=63.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH--------------HHHHHHhcCccc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK--------------QVVSLLLGERLE 272 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~--------------~ll~~l~~~~~~ 272 (1170)
.-.+++|.|..|.|||||.+.++.... ...+.+++... . ... ........ .+...+ -
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~-~~~-~~~~~~~~~i~~~~~~~~~~~~t~~e~l-----L 97 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-D-LRD-LDLESLRKNIAYVPQDPFLFSGTIRENI-----L 97 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-E-hhh-cCHHHHHhhEEEEcCCchhccchHHHHh-----h
Confidence 346899999999999999999987543 23455554311 0 100 00000000 000000 0
Q ss_pred CCCCChhHHHHHHhcCCCeEEEEeCCCC------hHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEee
Q 046888 273 TGGPNIPAYALERLRRTKVFMVLDDVSE------FEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEV 343 (1170)
Q Consensus 273 ~~~~~l~~~l~~~L~~kk~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l 343 (1170)
.+.+.-+-.+.+.+..++-+++||+-.. ...+..++..+. .+..||++|.+...... .+ +++.+
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d--~~~~l 167 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--AD--RIIVL 167 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CC--EEEEE
Confidence 0011112224456667888999998632 223333333332 34678888888776653 34 55554
No 371
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.1 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999873
No 372
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.76 E-value=0.24 Score=57.88 Aligned_cols=42 Identities=33% Similarity=0.387 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhh-----cCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 191 SSRIECIKSLLC-----TGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 191 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+-++++..||. ...-+.++..|+|++|+||||..+.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 344677777776 344557899999999999999999988754
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.74 E-value=0.061 Score=59.28 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCF 241 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1170)
.++.+|.|.|.+|.|||||+..+.+.++......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468999999999999999999999988776544333
No 374
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.13 Score=52.09 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=64.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
-.+++|+|..|.|||||++.+...+. ...+.+++.... ... ........ .+..-..-.+.+..+-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~--~~~-~~~~~~~~----~i~~~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD--IAK-LPLEELRR----RIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE--ccc-CCHHHHHh----ceEEEeeCCHHHHHHHHHHHHHh
Confidence 36899999999999999999987553 345566654211 100 00111111 01000000011112223445666
Q ss_pred CCCeEEEEeCCCC---hHH---HHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEee
Q 046888 288 RTKVFMVLDDVSE---FEQ---LKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEV 343 (1170)
Q Consensus 288 ~kk~LlVLDdv~~---~~~---~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l 343 (1170)
..+=++++|+... ... +..++.... ..+..||++|.+...+... .+ +++.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d--~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-AD--RVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CC--EEEEE
Confidence 7788999998742 222 333332222 2256788888887766654 23 55554
No 375
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.71 E-value=0.088 Score=51.09 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+++.+.|...-....+|.+.|.-|.||||+++.++..+
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 334444443222344689999999999999999999865
No 376
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.69 E-value=0.054 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
++.+|+|.|++|+||||+|+.++.++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 377
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.69 E-value=0.051 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...|.|+|++|.||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998873
No 378
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.68 E-value=0.5 Score=47.81 Aligned_cols=131 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh------------------------------ccCCceEEEEechhhhhcCcCHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS------------------------------NEFEGKCFIENVREEIENGVGLV 256 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~------------------------------~~F~~~~~~~~~~~~~~~~~~~~ 256 (1170)
..++-.|+|-.|+||+||..+++-... .+....+|+. ...-++..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlR-----AEs~yn~a 110 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLR-----AESFYNVA 110 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEe-----hhHHHHHH
Confidence 457889999999999999999875310 1112223332 22233333
Q ss_pred HHHHHHHHHHhcCcccC----CCCChhHHHHHHhcCCCeEEEEeCCCC----hHHHHHHHcccCCCCCCcEEEEEeCChh
Q 046888 257 HLHKQVVSLLLGERLET----GGPNIPAYALERLRRTKVFMVLDDVSE----FEQLKYLVGWLDGFCPGSRIVVTTRDKQ 328 (1170)
Q Consensus 257 ~l~~~ll~~l~~~~~~~----~~~~l~~~l~~~L~~kk~LlVLDdv~~----~~~~~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1170)
+-..++..+.......- ..+.......+++. .+-+.|||.=+. ..|++-+....+-...|+.|||.|-.+-
T Consensus 111 s~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 111 SYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred HHHHhhhhhcccCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 32222222111000000 22233333444444 456778998643 3566555443333457799999999986
Q ss_pred HHHHhCCCCcceEeecCC
Q 046888 329 VLRKQGVKDEHVYEVERL 346 (1170)
Q Consensus 329 v~~~~~~~~~~~~~l~~L 346 (1170)
++... +..+|++..-
T Consensus 190 LlAiP---~A~I~~~~~~ 204 (233)
T COG3910 190 LLAIP---GAEIYEISES 204 (233)
T ss_pred heeCC---CcEEEEEecC
Confidence 64433 3356765543
No 379
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.005 Score=65.11 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccc--ccccccccceeecCCCCCCCccCCC------CCCCCccc
Q 046888 591 EKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIW--EGKKKAFKLKSINLSHSQYLIRIPD------PSEAPNLE 662 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p~------~~~l~~L~ 662 (1170)
+.|++|.|+-|.+++|...-.+++|++|.|..|.|..+- .-++++++|+.|-|..|.-.+.-+. +.-+|||+
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 479999999999999887778999999999999988764 3468888899999888876554443 34566666
Q ss_pred ccc
Q 046888 663 RIN 665 (1170)
Q Consensus 663 ~L~ 665 (1170)
.|+
T Consensus 121 KLD 123 (388)
T KOG2123|consen 121 KLD 123 (388)
T ss_pred hcc
Confidence 665
No 380
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.76 Score=53.00 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=79.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
-|--.++|++|.|||++..++++.+. .-++.-.+.+ +.... . ++.++.. .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~-v~~n~---d-Lr~LL~~---------------------t 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTE-VKLDS---D-LRHLLLA---------------------T 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeecc-ccCcH---H-HHHHHHh---------------------C
Confidence 46678999999999999999987653 3344433322 21111 1 2222211 2
Q ss_pred CCCeEEEEeCCCChHH--------------------HHHHHcccC--CCCC-CcEEEE-EeCChhHHHHh-----CCCCc
Q 046888 288 RTKVFMVLDDVSEFEQ--------------------LKYLVGWLD--GFCP-GSRIVV-TTRDKQVLRKQ-----GVKDE 338 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~~~--------------------~~~l~~~~~--~~~~-gsrIIi-TTR~~~v~~~~-----~~~~~ 338 (1170)
..|-+||+.|+|..-+ +--|+..++ |... +-|||| ||-..+-+... .++
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD-- 362 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD-- 362 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce--
Confidence 3456677777754210 122333333 2223 336655 66544332221 233
Q ss_pred ceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHH-HHhcCC
Q 046888 339 HVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLG-SSLQQK 397 (1170)
Q Consensus 339 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg-~~L~~~ 397 (1170)
..+.+.-=+.+....|+..+... +.+. .++.+|.+...|.-+.=..++ .++..+
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~-~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGI-EEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCC-CCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 56778888888888888887632 2222 234445444445444333333 334444
No 381
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.58 E-value=0.26 Score=53.91 Aligned_cols=25 Identities=44% Similarity=0.740 Sum_probs=22.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
-.+++|+|..|+|||||++.++..+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998743
No 382
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.55 E-value=0.098 Score=54.03 Aligned_cols=35 Identities=29% Similarity=0.258 Sum_probs=27.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
..+|+|.|++|.||||+|+.++..+...-....++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999999875432223444
No 383
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.52 E-value=2.2 Score=46.70 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=76.5
Q ss_pred cccCCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCH
Q 046888 176 CTSMSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 176 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 255 (1170)
.+..+....+.|+|-..-. ++..++.......+.+.++|+.|+|||+-++.+++... ..|+.. .++.+..
T Consensus 63 ~q~~~~~~~~~~l~tkt~r-~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~----~~p~~~a 132 (297)
T COG2842 63 VQAALEKLAPDFLETKTVR-RIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIE----ADPSYTA 132 (297)
T ss_pred cccccccccccccccchhH-hHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-----cceeec----CChhhHH
Confidence 4434555677888876532 23333333333345899999999999999999987542 233321 4555666
Q ss_pred HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCC
Q 046888 256 VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGF 314 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~ 314 (1170)
..+...+.......... ........+..++++..-+++.|+.+.. ..++.+....+..
T Consensus 133 ~~~i~~i~~~~~~~~~~-~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 133 LVLILIICAAAFGATDG-TINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred HHHHHHHHHHHhcccch-hHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhh
Confidence 66666665555443322 1222333444677888889999988653 4466665444433
No 384
>PRK15115 response regulator GlrR; Provisional
Probab=93.51 E-value=2.5 Score=50.83 Aligned_cols=48 Identities=21% Similarity=0.132 Sum_probs=33.8
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..++|....+.++.+....-......|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777766655443222233457899999999999999997743
No 385
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.18 Score=54.72 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=25.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
-...++|||.+|.|||-+|++|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 357899999999999999999998876554
No 386
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.45 E-value=0.15 Score=57.28 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=41.6
Q ss_pred CCCCccccchhHHHHH---HHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEE
Q 046888 182 DSSKGLVGLSSRIECI---KSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCF 241 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 241 (1170)
.....+||.....+.. .+++..+.-.-|.|.|.|++|.|||+||..+++.+....+.+..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 3456899988777663 45554444346899999999999999999999999877775443
No 387
>PRK13947 shikimate kinase; Provisional
Probab=93.44 E-value=0.055 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
-|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988743
No 388
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.42 E-value=0.24 Score=51.02 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=60.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechh------------hhhcCcCH---HHHHHHHHHHHhcCcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVRE------------EIENGVGL---VHLHKQVVSLLLGERL 271 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~------------~~~~~~~~---~~l~~~ll~~l~~~~~ 271 (1170)
.-.+++|+|..|.|||||++.++.... ...+.+++....- .+.+...+ ..+.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------- 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-------- 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--------
Confidence 346899999999999999999987442 2344444421100 00000000 00000000
Q ss_pred cCCCCChhHHHHHHhcCCCeEEEEeCCCC---h---HHHHHHHcccCCCCCCcEEEEEeCChhHHHHh
Q 046888 272 ETGGPNIPAYALERLRRTKVFMVLDDVSE---F---EQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ 333 (1170)
Q Consensus 272 ~~~~~~l~~~l~~~L~~kk~LlVLDdv~~---~---~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 333 (1170)
-.+.+.-+-.+.+.+..++=++++|+-.. . ..+..++..+. ..|..||++|.+...+...
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL 161 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh
Confidence 00011112234466677888999998632 1 22333333322 2367789998888765543
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.42 E-value=0.086 Score=54.60 Aligned_cols=26 Identities=50% Similarity=0.649 Sum_probs=22.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 390
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.41 E-value=0.21 Score=55.34 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=44.3
Q ss_pred CCCCCccccchhHHHH---HHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC
Q 046888 181 SDSSKGLVGLSSRIEC---IKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE 237 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1170)
-...+.|||.....+. +.+++..+.-.-|.|.|+|++|.|||+||..+++.+...-+
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 3456789998877665 45566555555789999999999999999999999875544
No 391
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.40 E-value=0.35 Score=51.23 Aligned_cols=20 Identities=50% Similarity=0.630 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALF 229 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~ 229 (1170)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 392
>PRK06547 hypothetical protein; Provisional
Probab=93.38 E-value=0.073 Score=54.62 Aligned_cols=27 Identities=37% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....+|+|.|.+|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998864
No 393
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.35 E-value=0.47 Score=48.23 Aligned_cols=116 Identities=16% Similarity=0.021 Sum_probs=59.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC-------CC----C
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET-------GG----P 276 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-------~~----~ 276 (1170)
..+|-|++-.|.||||.|..++-+...+--.++++.-+.. ....+-....+.+ .+.-..... +. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg--~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG--AWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC--CcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 3578888889999999999998876555444443332221 1122333333322 110000000 00 0
Q ss_pred C---hhHHHHHHhcC-CCeEEEEeCCCChHH-----HHHHHcccCCCCCCcEEEEEeCCh
Q 046888 277 N---IPAYALERLRR-TKVFMVLDDVSEFEQ-----LKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 277 ~---l~~~l~~~L~~-kk~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
. ..+...+.+.. +-=|+|||.+...-. .+.+...+....++..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 0 11122234444 445999999842211 223333333445677999999976
No 394
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.34 E-value=0.78 Score=59.43 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=97.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC----CceEEEE--echhhhhcCcCHH-HHHHHHHHHHhcCcccCCCCChhHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF----EGKCFIE--NVREEIENGVGLV-HLHKQVVSLLLGERLETGGPNIPAY 281 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~--~~~~~~~~~~~~~-~l~~~ll~~l~~~~~~~~~~~l~~~ 281 (1170)
.-+.|+|-+|.||||+...++-....+. +..+|+. .... ...+.-. .+..-+...+.... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~--~~~~~~q~~~~~~l~~~~~~~~---~~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFAL--ARKFEKQLSLIDYLAEELFSQG---IAKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHH--hhhhHhhccHHHHHHHHHhccC---CcchhhHH
Confidence 3689999999999999998887543222 2223332 1111 0111111 22222222222211 11222222
Q ss_pred HHHHhcCCCeEEEEeCCCChHH------HHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEeecCCCHhHHHHHH
Q 046888 282 ALERLRRTKVFMVLDDVSEFEQ------LKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELF 355 (1170)
Q Consensus 282 l~~~L~~kk~LlVLDdv~~~~~------~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf 355 (1170)
..+.+...++|+.+|.++.... ...+-..+++ -+.+++|+|+|....-..... ...+++..+.++.-.+..
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~--f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKG--FAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhh--hhhccchhhhHHHHHHHH
Confidence 2378889999999999976432 2222222233 357899999997644322211 145566666655443222
Q ss_pred H--------HHHhccCCCC--hhHHH---HHHHHHHHhCCChhHHHHHHHHhc------CCCHHHHHHHHHHHhh
Q 046888 356 Y--------KYAFRQNHRP--EHLTV---LSKKAVRYAEGNPLALEVLGSSLQ------QKSKQDWENVLDNLKQ 411 (1170)
Q Consensus 356 ~--------~~af~~~~~~--~~~~~---~~~~i~~~~~GlPLAl~~lg~~L~------~~~~~~w~~~l~~l~~ 411 (1170)
. ...++..... ..... -..+-++.....|++|...+..-. ....+-++.+++.+-.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 2 1112211111 01111 112334445788999988875443 1345566766666543
No 395
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=93.33 E-value=0.2 Score=48.07 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=51.8
Q ss_pred EEeccccccccCchHHHHHHHHhcCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccC
Q 046888 12 VFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKD 73 (1170)
Q Consensus 12 vFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~ 73 (1170)
|||.|. +| ..+++.+...|+..|+.+.+-. ....|..+.+.+.+++.+++.+||+++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899996 66 4688999999998899876655 66899999999999999999999999983
No 396
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.33 E-value=0.67 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999988654
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.32 E-value=0.12 Score=57.09 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=31.9
Q ss_pred cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 203 TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 203 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.+-..-.++.|.|.+|.|||++|.+++.....+-..++|+.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34455689999999999999999998776544455677776
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.30 E-value=0.28 Score=54.84 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..++++|+|.+|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999998876543
No 399
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.29 E-value=1.9 Score=52.27 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..++|......++.+.+..-......+.|.|..|.|||++|+.+...-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 358888888887776665433334567899999999999999997743
No 400
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.28 E-value=0.18 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 046888 211 VGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 401
>PRK14531 adenylate kinase; Provisional
Probab=93.27 E-value=0.31 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+.|.|.|++|.||||+|+.++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 402
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.26 E-value=0.16 Score=52.30 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=63.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcc----------cCCCCC
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERL----------ETGGPN 277 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----------~~~~~~ 277 (1170)
-.+++|+|..|.|||||++.++.... ...+.+++... . .. ..........+ ..+..... -.+.+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~-~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-D-IS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-E-cc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 45899999999999999999987543 23444444311 0 10 00111111100 00000000 001111
Q ss_pred hhHHHHHHhcCCCeEEEEeCCCC------hHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEee
Q 046888 278 IPAYALERLRRTKVFMVLDDVSE------FEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEV 343 (1170)
Q Consensus 278 l~~~l~~~L~~kk~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l 343 (1170)
-+-.+.+.+..++=++++|+-.. ...+..++..+. ..|..||++|.+..... . .+ +++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d--~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-AD--RILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CC--EEEEE
Confidence 12234455667788999998632 222333333332 24667888888877654 3 34 55555
No 403
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.23 E-value=0.12 Score=54.63 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
....+|+|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999998775443345555
No 404
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.23 E-value=0.42 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 046888 211 VGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 405
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=2.2 Score=52.19 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=58.6
Q ss_pred CCCCCC-CccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechh
Q 046888 179 MSSDSS-KGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVRE 247 (1170)
Q Consensus 179 ~~~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 247 (1170)
..|.+. +++=|.+....+|.+-+.. +-....-|.++|++|.|||-+|++|+-+.+- -|+.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----~FlS---- 735 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----NFLS---- 735 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-----eEEe----
Confidence 344444 4566777777777655432 2222346889999999999999999986653 3443
Q ss_pred hhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC
Q 046888 248 EIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE 300 (1170)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~ 300 (1170)
+. +. .+++... ++ ..+.+++...+.-..+++.|.+|.+|.
T Consensus 736 -VK---GP-ELLNMYV----Gq----SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 736 -VK---GP-ELLNMYV----GQ----SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -ec---CH-HHHHHHh----cc----hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11 11 2222221 11 223334333344456899999999865
No 406
>PRK01184 hypothetical protein; Provisional
Probab=93.19 E-value=0.13 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=17.9
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.+|+|+|++|.||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 443
No 407
>PRK14529 adenylate kinase; Provisional
Probab=93.17 E-value=0.27 Score=52.57 Aligned_cols=92 Identities=22% Similarity=0.101 Sum_probs=49.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCC-
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRT- 289 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~k- 289 (1170)
|.|.|++|.||||+|+.++.++.- ....--.-+++.+.....+....+++ .........+.+...+.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~--~~is~gdllr~~i~~~t~lg~~i~~~----i~~G~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL--AHIESGAIFREHIGGGTELGKKAKEY----IDRGDLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC--CCcccchhhhhhccCCChHHHHHHHH----HhccCcchHHHHHHHHHHHHhccC
Confidence 788999999999999999987642 21110111222122222222222222 22222223344444555666432
Q ss_pred CeEEEEeCCC-ChHHHHHHH
Q 046888 290 KVFMVLDDVS-EFEQLKYLV 308 (1170)
Q Consensus 290 k~LlVLDdv~-~~~~~~~l~ 308 (1170)
.-=+|||+.- +.+|.+.|.
T Consensus 77 ~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 77 KNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCcEEEeCCCCCHHHHHHHH
Confidence 3458999994 556666554
No 408
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.96 Score=57.19 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=66.0
Q ss_pred CccccchhHHHHHHHHhhcC---C-C--CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTG---L-P--DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~---~-~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
+..+|-+..+..|...+... . + ..-...+.|+.|+|||.||++++.-+.+..+..+-+. +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 45788888888887777531 1 1 3567789999999999999999998866666544443 2222
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCe-EEEEeCCCChHH
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKV-FMVLDDVSEFEQ 303 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~-LlVLDdv~~~~~ 303 (1170)
++ .+.+.+.....-....-..+.+.++++++ +|.||||+..+.
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 22 23332222222112222345578888776 677899986543
No 409
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.15 E-value=0.23 Score=52.68 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=39.4
Q ss_pred hHHHHHHhcCCCeEEEEeCC----C--ChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEeec
Q 046888 279 PAYALERLRRTKVFMVLDDV----S--EFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEVE 344 (1170)
Q Consensus 279 ~~~l~~~L~~kk~LlVLDdv----~--~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~ 344 (1170)
+.++.+.|-..+-+|+.|.= | +.+.+-.++..+. ...|..||+.|-|..++..+. .++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d----r~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD----RVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC----EEEEEe
Confidence 44566788889999999963 2 2333444443332 134778999999999988653 455543
No 410
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.07 Score=55.16 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998876
No 411
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.09 E-value=0.45 Score=47.60 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998765
No 412
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.09 E-value=0.074 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|.+.|++|.||||+|+++..+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 413
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.05 E-value=0.21 Score=55.23 Aligned_cols=45 Identities=29% Similarity=0.348 Sum_probs=38.1
Q ss_pred HHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 199 SLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 199 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
++|..+-+.-+++.|+|.+|.|||++|.++..+...+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455577899999999999999999999998888888888886
No 414
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.00 E-value=1.4 Score=49.85 Aligned_cols=48 Identities=29% Similarity=0.300 Sum_probs=33.0
Q ss_pred eEeecCCCHhHHHHHHHHHHhccCCCC-hhHHHHHHHHHHHhCCChhHH
Q 046888 340 VYEVERLNEDEGLELFYKYAFRQNHRP-EHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 340 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLAl 387 (1170)
.++|++++.+|+..++..+.-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998874332222 223334455666669999644
No 415
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.96 E-value=1.2 Score=53.25 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh-ccCCceEEEEechhhhhcCcCHHHHHHHHHHH
Q 046888 187 LVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS-NEFEGKCFIENVREEIENGVGLVHLHKQVVSL 265 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1170)
..|...-+..|.+++. +-..-.++.|.|.+|+|||++|..++..+. .+-..++|+. -.....++...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-------lEm~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-------LEMSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHHH
Confidence 4555555666666654 444456899999999999999999997654 3223345543 234566777777665
Q ss_pred Hhc
Q 046888 266 LLG 268 (1170)
Q Consensus 266 l~~ 268 (1170)
..+
T Consensus 246 ~~~ 248 (421)
T TIGR03600 246 KSG 248 (421)
T ss_pred HcC
Confidence 543
No 416
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.95 E-value=0.38 Score=60.21 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=37.9
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...|..+|. .+-..-+++-|+|.+|+||||||..++......-..++|+.
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 445666675 45566789999999999999999887766555556677876
No 417
>PRK14526 adenylate kinase; Provisional
Probab=92.94 E-value=0.26 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 046888 211 VGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+.|+|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 418
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.93 E-value=2.8 Score=51.04 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 184 SKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
...++|....++++.+.+..-...-.-|.|.|..|.||+++|+.+++.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 345999999998888777533333457899999999999999999874
No 419
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.90 E-value=0.16 Score=57.18 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=29.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.|++...|.||+||||+|.+.+-..........-+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 588999999999999999998888877765544443
No 420
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=92.89 E-value=0.81 Score=45.25 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHHHhhccceEEEEeccCcccCCCcHHHHHHHHHhhhcCCcEEEEEEeeeC
Q 046888 54 PALLNAIEGSKISVIIFSKDYASSKWCPNELVNILKCKNLNGQIVIPIYYHVS 106 (1170)
Q Consensus 54 ~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~~~~~~~~~~~v~pif~~v~ 106 (1170)
.++.++|+++++.|+|+......+.+. .++.+.+.... .+..++.|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 367899999999999998766555542 25555554331 2345566655555
No 421
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.89 E-value=8.5 Score=43.24 Aligned_cols=168 Identities=9% Similarity=0.067 Sum_probs=91.6
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc--------c-CC-ceEEEEechhhhhcCcCHHHHHHHHH
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN--------E-FE-GKCFIENVREEIENGVGLVHLHKQVV 263 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-F~-~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1170)
++.+...+..+ .-..+..++|..|+||+++|+++.+.+-. . .+ ...++. . ........++. ++.
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~---~g~~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I---FDKDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c---CCCcCCHHHHH-HHH
Confidence 34455555322 22456779999999999999999998611 1 11 112221 0 01112222222 222
Q ss_pred HHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEe-CChhHHHHhCCCCcce
Q 046888 264 SLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTT-RDKQVLRKQGVKDEHV 340 (1170)
Q Consensus 264 ~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT-R~~~v~~~~~~~~~~~ 340 (1170)
..+... ..-.+++=++|+|+++.. .....|+..+...++.+.+|++| ....++..... ...+
T Consensus 79 ~~~~~~--------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S-Rc~~ 143 (299)
T PRK07132 79 NKLYFS--------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS-RCQV 143 (299)
T ss_pred HHhccC--------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh-CeEE
Confidence 221100 001135667888888654 34666776666666777777655 44455443321 2378
Q ss_pred EeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 341 YEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 341 ~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
+++.+++.++..+.+.... .+ .+.++.++...+|.--|++.+
T Consensus 144 ~~f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EECCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988776531 12 123455666666633455543
No 422
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.85 E-value=0.14 Score=50.55 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=26.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 243 (1170)
++|+|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999988744 44444443
No 423
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.83 E-value=0.55 Score=55.56 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 242 (1170)
.-+.++|.|.+|+|||||+.++.+....+ -+.++|.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~ 178 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA 178 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE
Confidence 34679999999999999999998876533 3444554
No 424
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.82 E-value=0.037 Score=35.36 Aligned_cols=18 Identities=50% Similarity=0.846 Sum_probs=9.2
Q ss_pred CCEEECcCCCCccccccc
Q 046888 811 LEWLELRENNFESLPVSI 828 (1170)
Q Consensus 811 L~~L~L~~n~l~~lp~~l 828 (1170)
|++|+|++|+|+.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 425
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=1.4 Score=49.54 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=28.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
....||.++|.-|.||||..-.+++.++.+--.++.++
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 45789999999999999998888877665543344443
No 426
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.77 E-value=0.2 Score=60.53 Aligned_cols=63 Identities=22% Similarity=0.473 Sum_probs=39.5
Q ss_pred hhHHHHHHhcCCCeEEEEeCCCC---hHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCCCCcceEeecC
Q 046888 278 IPAYALERLRRTKVFMVLDDVSE---FEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGVKDEHVYEVER 345 (1170)
Q Consensus 278 l~~~l~~~L~~kk~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~ 345 (1170)
.+..+.+.|-.++=+++||.=-+ .+.++.|...+.. -+| .+||.|-|+..+..... ++++++.
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t---~I~~ld~ 225 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVAT---HILELDR 225 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhh---heEEecC
Confidence 34455667777888999996533 2333333333322 245 79999999998887643 4565544
No 427
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.70 E-value=1.6 Score=49.64 Aligned_cols=54 Identities=26% Similarity=0.126 Sum_probs=35.6
Q ss_pred cceEeecCCCHhHHHHHHHHHHhc----cCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 046888 338 EHVYEVERLNEDEGLELFYKYAFR----QNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSL 394 (1170)
Q Consensus 338 ~~~~~l~~L~~~ea~~Lf~~~af~----~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 394 (1170)
..+++++..+.+|+.++...+.-. ...+. ++.-+++.-..+|+|--++-++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 457899999999999888776521 11122 3334566667799996666666554
No 428
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.69 E-value=0.078 Score=56.89 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+|||.|.+|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 429
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.68 E-value=0.29 Score=52.57 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.++.+.+.....+..+|||.|.||.||+||.-++...+..+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444444567899999999999999999998877654
No 430
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.67 E-value=0.077 Score=55.05 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 431
>PRK13949 shikimate kinase; Provisional
Probab=92.64 E-value=0.086 Score=54.03 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 432
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.44 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.-.+++|+|..|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 433
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.60 E-value=0.24 Score=55.84 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=32.1
Q ss_pred cccchhHHHHHHHHhhcCC---------------CCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 187 LVGLSSRIECIKSLLCTGL---------------PDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..|...++.+|.+.+.... ...-+++|+|.+|+||||+.+.+.....
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 4555666666655543111 1224799999999999999999987543
No 434
>PRK06217 hypothetical protein; Validated
Probab=92.53 E-value=0.085 Score=54.93 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|.|.|.+|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 435
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.52 E-value=0.17 Score=58.39 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccccchhHHHHHHHHhhcC------------CCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 186 GLVGLSSRIECIKSLLCTG------------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
.+||.+...+.+...+... ....+-|.++|++|+|||++|++++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 5788888887776555421 11236789999999999999999999875443
No 436
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.51 E-value=0.54 Score=51.00 Aligned_cols=25 Identities=44% Similarity=0.703 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
+.-.+++|.|+.|.|||||.+.++.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999987
No 437
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.49 E-value=0.11 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 438
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.48 E-value=0.23 Score=54.14 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+.|-++|..+-..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455566666667789999999999999999998775444556677775
No 439
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.47 E-value=0.087 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+|.|.|.+|.||||+|+.+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 440
>PRK05439 pantothenate kinase; Provisional
Probab=92.47 E-value=0.18 Score=56.57 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.....+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886653
No 441
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.45 E-value=0.086 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 442
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.44 E-value=0.88 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
++++|.|..|.|||||.+.+.-.+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997643
No 443
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.35 E-value=0.26 Score=57.96 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCccc-----CCCCChh--
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLE-----TGGPNIP-- 279 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-----~~~~~l~-- 279 (1170)
.-+.++|.|.+|+|||||+..++.....+...++.+.-+.+ +...+..+.++++..-...... .+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34679999999999999999988876544343443433433 2223334444444321111100 0111111
Q ss_pred ------HHHHHHh---cCCCeEEEEeCCCCh
Q 046888 280 ------AYALERL---RRTKVFMVLDDVSEF 301 (1170)
Q Consensus 280 ------~~l~~~L---~~kk~LlVLDdv~~~ 301 (1170)
-.+.+++ +++.+|+++|++-..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1133555 679999999999554
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.32 E-value=0.1 Score=54.08 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++++|.|++|+||||||+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.32 E-value=0.23 Score=56.29 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=61.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc-CHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV-GLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
....++|+|..|.||||+++++...+... ...+.+.+..+ ..-.. +...+ .. .............+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~E-l~~~~~~~~~l----~~--~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTRE-IFLPHPNYVHL----FY--SKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccc-cCCCCCCEEEE----Ee--cCCCCCcCccCHHHHHHHH
Confidence 34689999999999999999998766433 23444443333 11110 00000 00 0000011223345556677
Q ss_pred hcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 046888 286 LRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQ 328 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1170)
|+..+=.+|+|.+...+.++.+. .......| ++.|+-...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~-a~~~g~~~--~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIR-AVNTGHPG--SITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHH-HHhcCCCe--EEEEEeCCC
Confidence 88888899999999876655433 33222222 466665443
No 446
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.32 E-value=0.66 Score=47.92 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=62.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHh----cCc--ccC-C----C
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLL----GER--LET-G----G 275 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~----~~~--~~~-~----~ 275 (1170)
....|-|+|-.|-||||.|..++-+...+--.+.++.-+.. ....+-...++.+- .+. +.. ... . .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg--~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG--AWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC--CCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHH
Confidence 34689999999999999999998876655444554443322 11223333333210 000 000 000 0 0
Q ss_pred CC---hhHHHHHHhcC-CCeEEEEeCCCChHH-----HHHHHcccCCCCCCcEEEEEeCCh
Q 046888 276 PN---IPAYALERLRR-TKVFMVLDDVSEFEQ-----LKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 276 ~~---l~~~l~~~L~~-kk~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
.. ..+...+.+.. +-=|+|||.+...-. .+.+...+....++..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 00 11122234443 445999999843211 233333333445677999999976
No 447
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.32 E-value=0.1 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+|.|-|.+|.||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998764
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.31 E-value=0.12 Score=53.94 Aligned_cols=92 Identities=25% Similarity=0.234 Sum_probs=51.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcc---cCCCCChhHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERL---ETGGPNIPAYALE 284 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~---~~~~~~l~~~l~~ 284 (1170)
...++|+|..|.||||+++.+...+... ...+.+.+..+ ..... .... ++..... ........+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E-~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAE-LQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccc-cCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998866533 23343432222 10000 0000 0000000 0012334455556
Q ss_pred HhcCCCeEEEEeCCCChHHHHHHH
Q 046888 285 RLRRTKVFMVLDDVSEFEQLKYLV 308 (1170)
Q Consensus 285 ~L~~kk~LlVLDdv~~~~~~~~l~ 308 (1170)
.++..+=.++++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 677778888999998887665443
No 449
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.30 E-value=0.1 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 046888 211 VGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 450
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.28 E-value=0.11 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHhc
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
|.|.|.+|+|||||++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 451
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.25 E-value=0.61 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.-.+++|+|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 452
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.24 E-value=0.26 Score=53.36 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..|-++|..+-..-..+.|.|.+|.||||||.+++.....+-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555445556789999999999999999988765444556677775
No 453
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.24 E-value=0.21 Score=57.69 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHhhc---------CC---CCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 186 GLVGLSSRIECIKSLLCT---------GL---PDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~---------~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
.++|.+..++.+..++.. +. ...+.|.++|++|+|||+||+.++..+...|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 578988888888766642 00 1136789999999999999999998765443
No 454
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.21 E-value=2.4 Score=51.01 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=34.5
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
..++|....++++...+..-...-.-|.|.|..|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 35788888888777666432222244669999999999999999764
No 455
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.14 E-value=0.17 Score=53.84 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEec
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENV 245 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 245 (1170)
.....|.++||+|.||||+.+.++..+..++.. .++.|+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 345678899999999999999999887776653 344444
No 456
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.12 E-value=0.52 Score=52.60 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHH-H--HhccCCceEEEEe---chhhhhcCc-----CHHHHHHHH---HHHHhcCc
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFN-Q--ISNEFEGKCFIEN---VREEIENGV-----GLVHLHKQV---VSLLLGER 270 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~-~--~~~~F~~~~~~~~---~~~~~~~~~-----~~~~l~~~l---l~~l~~~~ 270 (1170)
.+++..|.+.|.+|.|||.||.+..- + -+..|...+.... +++.+.--+ .+..+.+.+ ++.+....
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 36789999999999999999986543 2 1333443332211 111111111 111122222 22222221
Q ss_pred ccCCCCChhHHH---------HHHhcCC---CeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC
Q 046888 271 LETGGPNIPAYA---------LERLRRT---KVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRD 326 (1170)
Q Consensus 271 ~~~~~~~l~~~l---------~~~L~~k---k~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~ 326 (1170)
.. +...+...+ ....+++ +.++|+|...+. .+++.++. ..|+||||+.|--.
T Consensus 322 ~~-~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G~GsKIVl~gd~ 387 (436)
T COG1875 322 EP-GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAGEGSKIVLTGDP 387 (436)
T ss_pred cc-chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---hccCCCEEEEcCCH
Confidence 11 111111110 1223333 568999999764 55666653 56899999998653
No 457
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.62 Score=49.34 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.-.+++|+|..|.|||||++.+.....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346899999999999999999987544
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.11 E-value=0.17 Score=51.65 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=25.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...+++|+|..|.|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 459
>PRK13948 shikimate kinase; Provisional
Probab=92.11 E-value=0.11 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+.|.++||.|.||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 460
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.10 E-value=0.26 Score=56.98 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=55.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCC-c-eEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFE-G-KCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
..|.|+|..|.||||++.++.+.+....+ . .+-+.+.-|..-. +...+.. ..+ .....+.......++..|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~--~~q---~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLP--PAQ---SQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeec--ccc---cccCCCccCHHHHHHHhh
Confidence 46889999999999999999887754332 2 3333322221000 0000000 000 000112234556677889
Q ss_pred cCCCeEEEEeCCCChHHHHHHH
Q 046888 287 RRTKVFMVLDDVSEFEQLKYLV 308 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~~~~~~~l~ 308 (1170)
+..+=.|+++.+.+.+..+..+
T Consensus 223 R~~PD~I~vGEiRd~et~~~al 244 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAV 244 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHH
Confidence 9999999999999998877544
No 461
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.08 E-value=0.96 Score=49.89 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=27.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..+++++|.+|+||||+++.+...+..+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 479999999999999999999887654323344443
No 462
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.07 E-value=0.34 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.-+..||+|.+|.||||+.+.++.+
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcC
Confidence 4577999999999999999999874
No 463
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.06 E-value=0.1 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
++.|+|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998763
No 464
>PRK13946 shikimate kinase; Provisional
Probab=92.04 E-value=0.11 Score=54.25 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+.|.+.|++|.||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998873
No 465
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.03 E-value=0.27 Score=55.28 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=54.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC--CceEEEEechhhhhc-CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF--EGKCFIENVREEIEN-GVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
+.+.|+|..|.||||+++++.+.+.... ...+-+.+..| ..- ..+... + .. ..+.....+.+...
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E-l~~~~~~~v~--------~--~~-~~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE-LQCAAPNVVQ--------L--RT-SDDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh-hcCCCCCEEE--------E--Ee-cCCCCCHHHHHHHH
Confidence 4678999999999999999998876532 23344443333 110 000000 0 00 01222566677788
Q ss_pred hcCCCeEEEEeCCCChHHHHHH
Q 046888 286 LRRTKVFMVLDDVSEFEQLKYL 307 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~~~~~~l 307 (1170)
|+..+=.||+..+.+.+.++.+
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHH
Confidence 8888889999999988776554
No 466
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.00 E-value=0.26 Score=51.68 Aligned_cols=26 Identities=38% Similarity=0.666 Sum_probs=22.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977766544
No 467
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.94 E-value=0.38 Score=54.88 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC------CceEEEEechhhhhcCcCHHHHHH
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF------EGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
..+..+|..+-..-.++-|+|.+|+|||++|.+++....... ..++|+. ....+...++.+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~-----te~~f~~~rl~~ 155 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID-----TEGTFRPERIEQ 155 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe-----CCCCcCHHHHHH
Confidence 345556655555678999999999999999999987643221 3577876 444455555543
No 468
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=1.6 Score=47.26 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHhh----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 185 KGLVGLSSRIECIKSLLC----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
....|.+...+.|.+..- ......+-|.++|++|.||+-||++|+.+.-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 467888888888876542 2223368899999999999999999987643
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.90 E-value=0.097 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.|+|+|+.|+|||||++.+...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765443
No 470
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=1.2 Score=53.62 Aligned_cols=170 Identities=22% Similarity=0.314 Sum_probs=93.7
Q ss_pred ccccchhHHHHHHHHhh-----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcC
Q 046888 186 GLVGLSSRIECIKSLLC-----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVG 254 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 254 (1170)
.+-|....+..++.... .+-...+-+..+|++|.|||-+|++|+++.. ..+|..+..+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pe------- 253 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPE------- 253 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHH-------
Confidence 44556666666665543 1223467899999999999999999998765 3344443222
Q ss_pred HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCC-CeEEEEeCCCChH------------HHHHHHcccCCCCCCcEE-
Q 046888 255 LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRT-KVFMVLDDVSEFE------------QLKYLVGWLDGFCPGSRI- 320 (1170)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~k-k~LlVLDdv~~~~------------~~~~l~~~~~~~~~gsrI- 320 (1170)
+++...++ ....++..+.+..+.+ +..+.+|+++..- ....+....++.++.+++
T Consensus 254 -------li~k~~gE----te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 254 -------LISKFPGE----TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred -------HHHhcccc----hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 12222111 1223344444556666 8888888874321 123333334444444443
Q ss_pred -EEEeCChhHHHH-h---CCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 321 -VVTTRDKQVLRK-Q---GVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 321 -IiTTR~~~v~~~-~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
|-|||....+.. . ..+ +.+++.--+..+-.+++..+.-..... ..++ .+++..+.|.
T Consensus 323 vl~atnrp~sld~alRRgRfd--~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l----~~iA~~thGy 385 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFD--REVEIGIPGSDGRLDILRVLTKKMNLLSDVDL----EDIAVSTHGY 385 (693)
T ss_pred EEEecCCccccChhhhcCCCc--ceeeecCCCchhHHHHHHHHHHhcCCcchhhH----HHHHHHccch
Confidence 345555433221 1 233 667787788888888887776443333 2333 3455555554
No 471
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.88 E-value=0.37 Score=56.53 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=51.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcc-----cCCCCChh--
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERL-----ETGGPNIP-- 279 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-----~~~~~~l~-- 279 (1170)
.-+.++|.|.+|+|||||+..+......+...++.+.-+.+ +...+..+.++++..-..... ..+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE---R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC---CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34679999999999999999998866544344444444443 122334444444321111110 00111111
Q ss_pred ------HHHHHHh---cCCCeEEEEeCCCChH
Q 046888 280 ------AYALERL---RRTKVFMVLDDVSEFE 302 (1170)
Q Consensus 280 ------~~l~~~L---~~kk~LlVLDdv~~~~ 302 (1170)
-.+.+++ +++.+|+++||+-...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 1233555 4589999999996543
No 472
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.88 E-value=0.24 Score=49.58 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
...+|-+.|.+|.||||||.+++.++..+.-.+..+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457999999999999999999999887765444333
No 473
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.41 Score=50.17 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=36.4
Q ss_pred CChhHHHHHHhcCCCeEEEEeCCCCh---HHHHHHHcccCC-CCCCcEEEEEeCChhHHHHhCCC
Q 046888 276 PNIPAYALERLRRTKVFMVLDDVSEF---EQLKYLVGWLDG-FCPGSRIVVTTRDKQVLRKQGVK 336 (1170)
Q Consensus 276 ~~l~~~l~~~L~~kk~LlVLDdv~~~---~~~~~l~~~~~~-~~~gsrIIiTTR~~~v~~~~~~~ 336 (1170)
+.-+..+.+.+--++=+.|||.-++- +.++.+...... ..+|+-++|.|-...++.....+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 34444555666678889999988653 223222222211 23566677777777887776555
No 474
>PLN02674 adenylate kinase
Probab=91.82 E-value=0.6 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..|.|.|++|.||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999998765
No 475
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.78 E-value=0.79 Score=50.21 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=50.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh----ccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCccc-----CCCCCh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS----NEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLE-----TGGPNI 278 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-----~~~~~l 278 (1170)
-+.++|.|-+|+|||+|+..+.++.. .+-+.++|.. +.+ +......+.+++...-...... .+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGe---R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGI---TMEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecc---ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 46789999999999999999887653 1234455553 333 1223334444443321111100 011111
Q ss_pred h--------HHHHHHhc---CCCeEEEEeCCCChHH
Q 046888 279 P--------AYALERLR---RTKVFMVLDDVSEFEQ 303 (1170)
Q Consensus 279 ~--------~~l~~~L~---~kk~LlVLDdv~~~~~ 303 (1170)
. -.+.++++ ++++|+++||+-...+
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 1 11234443 6899999999965443
No 476
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77 E-value=0.59 Score=48.77 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=55.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhcc---C-CceEEEEechhhhhcC-cCHHHHHHHHHHHHhcCcccCCCCChhHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNE---F-EGKCFIENVREEIENG-VGLVHLHKQVVSLLLGERLETGGPNIPAYAL 283 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---F-~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~ 283 (1170)
--..|.|++|+|||||.+.+++-++.. | +..+-+.+-+...... .+..+.. +......- +...-.+-+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~--~g~R~dVl----d~cpk~~gmm 211 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHG--RGRRMDVL----DPCPKAEGMM 211 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhh--hhhhhhhc----ccchHHHHHH
Confidence 346799999999999999999866543 3 2233332222111110 0111111 10000000 0000011111
Q ss_pred HHh-cCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeC
Q 046888 284 ERL-RRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTR 325 (1170)
Q Consensus 284 ~~L-~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR 325 (1170)
... ...+=.+|+|.+...++..++...+. .|-++|.|.-
T Consensus 212 maIrsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaH 251 (308)
T COG3854 212 MAIRSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAH 251 (308)
T ss_pred HHHHhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeec
Confidence 222 23567899999988877666665543 6777777754
No 477
>PRK15453 phosphoribulokinase; Provisional
Probab=91.73 E-value=0.24 Score=54.24 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
...+|+|.|-+|.||||+|+++.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999977654
No 478
>PLN02459 probable adenylate kinase
Probab=91.72 E-value=0.24 Score=53.96 Aligned_cols=94 Identities=21% Similarity=0.164 Sum_probs=48.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC-
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR- 288 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~- 288 (1170)
.+.|.|++|.||||+|+.++.++. |....-=.-+++.+.....+.. .+............+.+...+.+++..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~----~i~~~~~~G~lVPdeiv~~ll~~~l~~~ 104 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGA----QLKEIVNQGKLVPDEIIFSLLSKRLEAG 104 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHH----HHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 367789999999999999988653 2211111112221222111111 122222222222233334444555542
Q ss_pred ---CCeEEEEeCCC-ChHHHHHHHc
Q 046888 289 ---TKVFMVLDDVS-EFEQLKYLVG 309 (1170)
Q Consensus 289 ---kk~LlVLDdv~-~~~~~~~l~~ 309 (1170)
.+--+|||..- +..|.+.|..
T Consensus 105 ~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 105 EEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred cccCCceEEEeCCCCCHHHHHHHHh
Confidence 34568999994 5677666653
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.71 E-value=0.27 Score=61.61 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-..|+|+|..|.|||||||.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999865
No 480
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.65 E-value=0.19 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
+++|+|..|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999988765
No 481
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.63 E-value=0.29 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.8
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.++.|.|.+|+||||++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999887653
No 482
>PRK14530 adenylate kinase; Provisional
Probab=91.59 E-value=0.14 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|.|+|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 483
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.57 E-value=0.29 Score=60.03 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=38.5
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
+..+-|..-.+.|.++.........+|.|+|++|.||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34556666666677766555555668999999999999999999998764
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.56 E-value=1.6 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.++++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987663
No 485
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.56 E-value=0.14 Score=51.67 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=23.8
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
+-|.++||.|.||||+.++++.++.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3588999999999999999998775544
No 486
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.54 E-value=1 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 487
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.53 E-value=0.21 Score=55.21 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=29.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
++|+|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999998876 566664
No 488
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.53 E-value=0.16 Score=52.79 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
.|++.|+|+.|+|||||++.+......+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999888888544443
No 489
>PRK13975 thymidylate kinase; Provisional
Probab=91.53 E-value=0.15 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=23.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 490
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.52 E-value=0.13 Score=51.40 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALF 229 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~ 229 (1170)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 491
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.50 E-value=0.14 Score=52.75 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+.|.|+|+.|.||||+|+.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999998753
No 492
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=91.48 E-value=0.46 Score=55.27 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.++|+|+.|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999999865
No 493
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.47 E-value=0.17 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 494
>PRK05973 replicative DNA helicase; Provisional
Probab=91.44 E-value=0.32 Score=52.40 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=29.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45578999999999999999998876544444556654
No 495
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.43 Score=53.52 Aligned_cols=73 Identities=25% Similarity=0.245 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHH
Q 046888 157 RPEAMLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVK 226 (1170)
Q Consensus 157 ~~e~~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~ 226 (1170)
.+++.+++-.-.+|..+- +-..=+.+.|.....+-|++.... -...-+-|..+|++|.|||-||+
T Consensus 189 ~~d~~Lve~lerdIl~~n-----p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAK 263 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRN-----PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAK 263 (491)
T ss_pred cchHHHHHHHHHHHhccC-----CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHH
Confidence 345555555445555442 223335788888887777765431 11234678999999999999999
Q ss_pred HHHHHHhc
Q 046888 227 ALFNQISN 234 (1170)
Q Consensus 227 ~v~~~~~~ 234 (1170)
+|+.+...
T Consensus 264 AvATEc~t 271 (491)
T KOG0738|consen 264 AVATECGT 271 (491)
T ss_pred HHHHhhcC
Confidence 99987653
No 496
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.40 E-value=0.27 Score=60.76 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc-cCCceEEEEechhhhhcCcCHHHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN-EFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
++...+.++|.+..++.|...+..+ +.+.++|.+|.||||+|+.+++.+.. +++...|+.+ .......+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n------p~~~~~~~ 95 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN------PEDPNNPK 95 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC------CCcchHHH
Confidence 4455567999999888888877543 46899999999999999999987643 3466777764 22344455
Q ss_pred HHHHHHHH
Q 046888 259 HKQVVSLL 266 (1170)
Q Consensus 259 ~~~ll~~l 266 (1170)
.+.+..++
T Consensus 96 ~~~v~~~~ 103 (637)
T PRK13765 96 IRTVPAGK 103 (637)
T ss_pred HHHHHHhc
Confidence 55555433
No 497
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.38 E-value=0.056 Score=34.50 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=15.5
Q ss_pred CCCEEeCCCCCCCCCCcccCC
Q 046888 787 SLNWLNLNNCALTAIPEEIGC 807 (1170)
Q Consensus 787 ~L~~L~L~~~~l~~ip~~l~~ 807 (1170)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888877776554
No 498
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.38 E-value=0.25 Score=55.72 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=27.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
|++.+.|-||+||||+|-+.+-..+.+-..+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 68899999999999999998887766544444443
No 499
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.33 E-value=2 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.-.+-|.++|++|.|||.||++++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 345679999999999999999999864
No 500
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.27 E-value=0.53 Score=53.58 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc------CCceEEEEechhhhhcCcCHHHHH
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE------FEGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
..+..+|..+-..-.++-|+|.+|+||||+|.+++...... -..++|+. ....+...++.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~-----te~~f~~~rl~ 147 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID-----TENTFRPERIM 147 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE-----CCCCCCHHHHH
Confidence 34555665554567899999999999999999998765321 12577886 44445555544
Done!