Query 046888
Match_columns 1170
No_of_seqs 1060 out of 5945
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 09:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 3.9E-48 1.3E-52 387.0 10.9 171 1-177 1-172 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 5.1E-46 1.7E-50 376.6 10.4 167 6-175 32-201 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-39 4.4E-44 398.4 19.9 298 188-502 131-473 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 8.6E-34 2.9E-38 383.9 23.9 307 179-500 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 6.3E-33 2.1E-37 340.6 23.2 277 185-493 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 3.3E-32 1.1E-36 337.9 21.8 338 179-537 118-507 (591)
7 3h16_A TIR protein; bacteria T 99.9 1.5E-28 5E-33 246.3 1.3 117 7-124 18-135 (154)
8 4ecn_A Leucine-rich repeat pro 99.9 5.2E-26 1.8E-30 288.5 24.1 264 614-895 549-840 (876)
9 4eco_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 285.6 18.3 296 582-895 239-600 (636)
10 3rgz_A Protein brassinosteroid 99.9 8.5E-26 2.9E-30 288.6 17.7 281 547-849 240-555 (768)
11 3rgz_A Protein brassinosteroid 99.9 1E-25 3.5E-30 287.8 18.4 322 549-896 338-741 (768)
12 4ecn_A Leucine-rich repeat pro 99.9 5.9E-25 2E-29 278.9 23.3 294 592-908 492-832 (876)
13 4eco_A Uncharacterized protein 99.9 7.2E-25 2.4E-29 273.6 23.1 299 582-894 198-578 (636)
14 3t6q_A CD180 antigen; protein- 99.9 7.2E-24 2.5E-28 264.1 28.0 311 534-864 37-436 (606)
15 3t6q_A CD180 antigen; protein- 99.9 5.9E-24 2E-28 264.9 26.5 266 592-863 130-459 (606)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-24 1.2E-28 266.9 23.8 175 686-863 303-507 (606)
17 3o6n_A APL1; leucine-rich repe 99.9 8.8E-24 3E-28 248.1 24.9 228 592-843 94-329 (390)
18 3oja_B Anopheles plasmodium-re 99.9 9.8E-24 3.3E-28 261.7 25.2 286 543-864 64-356 (597)
19 3v47_A TOLL-like receptor 5B a 99.9 6.6E-24 2.2E-28 254.7 22.8 312 534-865 34-407 (455)
20 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-24 1.2E-28 261.8 20.3 333 534-899 25-460 (520)
21 2id5_A Lingo-1, leucine rich r 99.9 7.9E-24 2.7E-28 255.6 23.2 284 534-845 36-333 (477)
22 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-23 8.5E-28 259.3 26.2 194 687-894 347-557 (606)
23 2z81_A CD282 antigen, TOLL-lik 99.9 5.2E-24 1.8E-28 262.1 19.0 310 534-863 30-441 (549)
24 4fmz_A Internalin; leucine ric 99.9 2.4E-23 8.1E-28 240.4 22.4 248 592-864 67-322 (347)
25 4fmz_A Internalin; leucine ric 99.9 4.4E-23 1.5E-27 238.1 24.5 278 549-864 61-344 (347)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.3E-23 1.8E-27 253.6 24.9 331 534-893 56-508 (562)
27 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-22 4.3E-27 261.9 27.0 301 534-863 28-391 (844)
28 2z63_A TOLL-like receptor 4, v 99.9 7.6E-23 2.6E-27 252.9 23.6 124 734-863 375-504 (570)
29 1o6v_A Internalin A; bacterial 99.9 7.3E-23 2.5E-27 246.2 22.5 297 549-893 63-364 (466)
30 2z63_A TOLL-like receptor 4, v 99.9 3.7E-23 1.3E-27 255.7 19.5 169 684-863 276-480 (570)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 5.7E-27 248.6 23.4 327 535-894 55-509 (549)
32 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.2E-27 236.9 21.7 297 552-892 43-349 (390)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-22 1.2E-26 252.3 25.9 290 592-893 273-620 (680)
34 3v47_A TOLL-like receptor 5B a 99.9 5.1E-22 1.7E-26 238.2 25.9 305 554-892 30-405 (455)
35 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-22 1.3E-26 238.1 22.9 275 549-870 37-324 (457)
36 2id5_A Lingo-1, leucine rich r 99.9 4.6E-22 1.6E-26 240.2 23.7 237 592-843 57-307 (477)
37 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-22 1.6E-26 237.5 23.1 266 592-898 43-323 (457)
38 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-22 7.5E-27 245.8 20.0 326 535-893 50-479 (520)
39 1jl5_A Outer protein YOPM; leu 99.9 1.9E-21 6.6E-26 231.9 27.6 266 553-874 110-377 (454)
40 3oja_B Anopheles plasmodium-re 99.9 4.2E-22 1.4E-26 247.0 22.2 297 552-892 49-355 (597)
41 3j0a_A TOLL-like receptor 5; m 99.9 6E-22 2.1E-26 255.6 23.4 295 545-863 64-461 (844)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9E-22 3.1E-26 242.6 22.3 301 554-892 52-483 (562)
43 1xku_A Decorin; proteoglycan, 99.9 2.3E-21 7.8E-26 222.0 23.8 216 591-825 52-279 (330)
44 1o6v_A Internalin A; bacterial 99.9 9.8E-22 3.3E-26 236.3 21.7 295 550-893 86-386 (466)
45 4fcg_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 228.5 16.4 218 592-857 82-302 (328)
46 1xku_A Decorin; proteoglycan, 99.9 2.2E-21 7.4E-26 222.2 23.3 252 592-864 32-304 (330)
47 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-21 9E-26 244.4 26.2 258 534-819 29-306 (680)
48 1jl5_A Outer protein YOPM; leu 99.9 5.3E-21 1.8E-25 228.2 27.2 240 589-863 89-347 (454)
49 4fcg_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 228.6 15.9 212 612-871 80-295 (328)
50 2ft3_A Biglycan; proteoglycan, 99.9 1E-21 3.5E-26 225.2 20.1 213 592-843 55-275 (332)
51 3ub2_A TOLL/interleukin-1 rece 99.9 5.4E-24 1.8E-28 209.4 0.5 134 4-142 5-145 (146)
52 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-22 7.4E-27 228.5 13.6 243 591-867 50-305 (313)
53 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-21 4E-26 224.6 19.2 241 553-845 53-307 (332)
54 1ogq_A PGIP-2, polygalacturona 99.8 6.2E-22 2.1E-26 224.7 9.4 249 554-849 50-308 (313)
55 4g8a_A TOLL-like receptor 4; l 99.8 2.9E-20 1E-24 232.6 24.2 121 534-668 56-182 (635)
56 3zyi_A Leucine-rich repeat-con 99.8 2.9E-20 9.8E-25 222.6 23.0 235 593-844 56-302 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 2.5E-20 8.5E-25 222.3 22.1 235 593-844 45-291 (440)
58 1ozn_A Reticulon 4 receptor; N 99.8 2E-20 6.8E-25 209.5 19.0 222 594-848 14-241 (285)
59 3g06_A SSPH2 (leucine-rich rep 99.8 4.9E-20 1.7E-24 226.5 23.8 250 554-863 40-294 (622)
60 3g06_A SSPH2 (leucine-rich rep 99.8 7E-20 2.4E-24 225.2 24.6 240 554-850 61-302 (622)
61 2z66_A Variable lymphocyte rec 99.8 2.2E-20 7.5E-25 211.4 18.1 233 595-843 11-259 (306)
62 2z80_A TOLL-like receptor 2, v 99.8 4.7E-21 1.6E-25 221.6 11.3 246 590-847 51-316 (353)
63 1wwl_A Monocyte differentiatio 99.8 5.1E-21 1.8E-25 217.2 5.2 235 592-845 44-309 (312)
64 2z66_A Variable lymphocyte rec 99.8 3.6E-20 1.2E-24 209.6 11.8 219 590-823 27-262 (306)
65 4g8a_A TOLL-like receptor 4; l 99.8 4.1E-18 1.4E-22 213.1 27.6 311 534-864 80-578 (635)
66 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.7E-25 212.4 5.9 236 592-869 35-278 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-20 6.2E-25 213.2 4.7 231 593-865 12-249 (317)
68 3zyj_A Leucine-rich repeat-con 99.8 1.7E-18 5.8E-23 206.4 21.5 218 589-822 62-292 (440)
69 3zyi_A Leucine-rich repeat-con 99.8 1.3E-18 4.6E-23 208.1 19.7 218 589-822 73-303 (452)
70 2js7_A Myeloid differentiation 99.8 2.1E-20 7E-25 187.1 2.6 100 6-107 13-117 (160)
71 2j67_A TOLL like receptor 10; 99.8 4.2E-20 1.4E-24 187.7 4.4 100 6-107 32-136 (178)
72 3oja_A Leucine-rich immune mol 99.8 2.2E-19 7.6E-24 216.2 10.8 212 592-845 35-250 (487)
73 2z80_A TOLL-like receptor 2, v 99.8 7.1E-19 2.4E-23 203.3 14.5 246 554-824 52-316 (353)
74 1fyx_A TOLL-like receptor 2; b 99.8 1.7E-20 6E-25 185.8 0.5 99 6-106 2-105 (149)
75 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-18 4.2E-23 194.9 15.5 201 589-822 30-238 (285)
76 1t3g_A X-linked interleukin-1 99.8 1.6E-19 5.3E-24 180.5 6.9 101 8-108 1-115 (159)
77 2z62_A TOLL-like receptor 4, v 99.8 3.8E-18 1.3E-22 189.9 18.2 219 596-848 12-240 (276)
78 4ay9_X Follicle-stimulating ho 99.8 2E-18 6.9E-23 199.1 15.3 223 594-850 12-241 (350)
79 3oja_A Leucine-rich immune mol 99.8 5.8E-19 2E-23 212.6 10.6 235 552-840 32-270 (487)
80 1p9a_G Platelet glycoprotein I 99.7 1.5E-17 5E-22 186.2 18.8 194 592-844 11-207 (290)
81 1p9a_G Platelet glycoprotein I 99.7 4.9E-17 1.7E-21 182.0 19.9 201 549-822 5-208 (290)
82 2o6q_A Variable lymphocyte rec 99.7 6.9E-17 2.4E-21 179.0 20.3 198 592-846 17-219 (270)
83 2o6q_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 177.7 20.2 179 589-822 35-218 (270)
84 2xwt_C Thyrotropin receptor; s 99.7 2.2E-17 7.5E-22 179.5 13.8 205 603-843 23-237 (239)
85 1wwl_A Monocyte differentiatio 99.7 6.3E-19 2.2E-23 199.9 0.7 227 612-869 42-289 (312)
86 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-19 4E-24 218.0 -5.9 279 550-843 24-352 (461)
87 1h6u_A Internalin H; cell adhe 99.7 4.4E-17 1.5E-21 184.2 15.2 188 592-844 42-229 (308)
88 1h6u_A Internalin H; cell adhe 99.7 3.6E-17 1.2E-21 184.9 14.1 207 614-864 20-228 (308)
89 2xwt_C Thyrotropin receptor; s 99.7 3.3E-17 1.1E-21 178.1 13.3 213 617-866 15-239 (239)
90 1z7x_W Ribonuclease inhibitor; 99.7 5.9E-19 2E-23 211.9 -1.0 303 548-864 50-409 (461)
91 3rfs_A Internalin B, repeat mo 99.7 4.1E-17 1.4E-21 181.0 11.4 149 686-863 81-232 (272)
92 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.5E-21 177.0 15.4 225 592-857 20-247 (272)
93 2z62_A TOLL-like receptor 4, v 99.7 3.7E-16 1.3E-20 173.7 17.8 200 589-822 26-237 (276)
94 4glp_A Monocyte differentiatio 99.7 8.1E-17 2.8E-21 182.3 11.6 149 687-845 142-307 (310)
95 2qen_A Walker-type ATPase; unk 99.7 2.4E-15 8.2E-20 173.3 23.2 292 179-494 6-349 (350)
96 2ca6_A RAN GTPase-activating p 99.7 6.6E-18 2.3E-22 197.7 0.7 231 611-847 30-318 (386)
97 2ast_B S-phase kinase-associat 99.7 2.1E-17 7.2E-22 189.5 4.0 61 782-842 218-282 (336)
98 2ast_B S-phase kinase-associat 99.7 6E-17 2.1E-21 185.6 7.1 213 591-819 47-282 (336)
99 2ca6_A RAN GTPase-activating p 99.6 2.2E-17 7.4E-22 193.3 1.9 250 613-864 9-314 (386)
100 2fna_A Conserved hypothetical 99.6 9.8E-15 3.3E-19 168.6 23.5 291 179-493 7-356 (357)
101 3cvr_A Invasion plasmid antige 99.6 1.6E-15 5.5E-20 184.0 16.5 189 592-830 60-252 (571)
102 4glp_A Monocyte differentiatio 99.6 3.9E-16 1.3E-20 176.7 10.1 196 592-822 92-307 (310)
103 3m19_A Variable lymphocyte rec 99.6 5.4E-15 1.9E-19 161.8 18.5 91 750-847 102-194 (251)
104 3m19_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 157.4 18.1 176 592-823 15-193 (251)
105 1h6t_A Internalin B; cell adhe 99.6 5E-15 1.7E-19 165.8 13.1 190 613-845 24-213 (291)
106 1m9s_A Internalin B; cell inva 99.6 4.6E-15 1.6E-19 182.1 13.5 192 612-846 20-211 (605)
107 4ay9_X Follicle-stimulating ho 99.6 7.2E-15 2.5E-19 169.3 14.3 223 616-872 12-242 (350)
108 1dce_A Protein (RAB geranylger 99.6 3.3E-16 1.1E-20 191.1 2.3 163 677-849 359-550 (567)
109 1dce_A Protein (RAB geranylger 99.6 1.1E-16 3.8E-21 195.4 -2.4 195 611-839 347-567 (567)
110 3goz_A Leucine-rich repeat-con 99.6 2.3E-16 7.9E-21 182.8 0.4 219 614-843 23-295 (362)
111 1h6t_A Internalin B; cell adhe 99.5 8.8E-15 3E-19 163.8 11.3 170 592-825 47-216 (291)
112 3ogk_B Coronatine-insensitive 99.5 2E-16 6.9E-21 196.2 -2.8 290 551-864 161-499 (592)
113 3ogk_B Coronatine-insensitive 99.5 8.7E-16 3E-20 190.5 2.6 297 550-864 188-524 (592)
114 1w5s_A Origin recognition comp 99.5 9E-14 3.1E-18 164.0 19.2 286 182-479 19-371 (412)
115 1m9s_A Internalin B; cell inva 99.5 1.4E-14 4.9E-19 177.7 12.2 186 598-825 28-213 (605)
116 3cvr_A Invasion plasmid antige 99.5 4.2E-14 1.5E-18 171.6 13.6 186 555-808 60-253 (571)
117 2p1m_B Transport inhibitor res 99.5 1.8E-16 6.1E-21 196.8 -7.6 293 591-894 156-518 (594)
118 1xeu_A Internalin C; cellular 99.5 6.9E-14 2.3E-18 154.0 11.4 169 611-845 17-185 (263)
119 3goz_A Leucine-rich repeat-con 99.5 2.1E-15 7.3E-20 174.6 -1.1 216 617-843 2-264 (362)
120 3e6j_A Variable lymphocyte rec 99.5 2.7E-13 9.2E-18 145.9 15.4 150 672-848 24-175 (229)
121 2qby_B CDC6 homolog 3, cell di 99.5 6.7E-12 2.3E-16 146.4 27.6 274 184-479 19-339 (384)
122 4ezg_A Putative uncharacterize 99.5 7.1E-14 2.4E-18 146.7 8.3 40 685-724 83-122 (197)
123 2v9t_B SLIT homolog 2 protein 99.5 5.8E-13 2E-17 142.3 15.5 146 672-844 16-164 (220)
124 2o6s_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 142.4 13.8 86 752-850 97-183 (208)
125 4ezg_A Putative uncharacterize 99.4 2.2E-13 7.6E-18 142.9 11.1 139 676-844 53-193 (197)
126 2v70_A SLIT-2, SLIT homolog 2 99.4 8.2E-13 2.8E-17 141.1 15.6 148 672-846 16-167 (220)
127 2o6s_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 139.2 15.9 167 673-870 13-182 (208)
128 2p1m_B Transport inhibitor res 99.4 2.2E-15 7.5E-20 186.9 -5.7 303 550-865 152-518 (594)
129 2xot_A Amphoterin-induced prot 99.4 6.1E-13 2.1E-17 153.8 13.7 88 750-844 107-201 (361)
130 2v9t_B SLIT homolog 2 protein 99.4 2.6E-12 8.9E-17 137.3 15.0 112 686-822 52-165 (220)
131 1xeu_A Internalin C; cellular 99.4 1E-12 3.5E-17 144.5 11.9 155 675-864 27-183 (263)
132 2v1u_A Cell division control p 99.4 4E-11 1.4E-15 139.8 25.4 281 182-479 16-351 (387)
133 2qby_A CDC6 homolog 1, cell di 99.4 1.3E-11 4.5E-16 143.9 20.6 284 182-479 17-348 (386)
134 3e6j_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 136.8 14.5 63 752-822 109-172 (229)
135 2xot_A Amphoterin-induced prot 99.4 3.2E-12 1.1E-16 147.6 14.0 150 672-849 23-179 (361)
136 2v70_A SLIT-2, SLIT homolog 2 99.3 4.5E-12 1.5E-16 135.4 13.5 150 594-799 14-166 (220)
137 4b8c_D Glucose-repressible alc 99.3 3.1E-13 1E-17 170.2 3.5 195 613-863 173-369 (727)
138 2ell_A Acidic leucine-rich nuc 99.3 4.7E-12 1.6E-16 129.0 10.4 130 688-843 22-158 (168)
139 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4.2E-15 135.9 23.2 305 183-500 15-387 (389)
140 4b8c_D Glucose-repressible alc 99.3 5.6E-13 1.9E-17 167.9 1.6 123 619-769 207-330 (727)
141 2je0_A Acidic leucine-rich nuc 99.2 8.8E-12 3E-16 124.2 8.3 125 690-840 17-148 (149)
142 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 6.8E-16 125.4 9.2 131 686-843 15-151 (176)
143 1njg_A DNA polymerase III subu 99.2 1.9E-10 6.4E-15 124.5 16.9 189 181-394 19-231 (250)
144 2ell_A Acidic leucine-rich nuc 99.2 2.9E-11 1E-15 123.1 9.8 124 731-864 23-158 (168)
145 3sb4_A Hypothetical leucine ri 99.2 5.9E-11 2E-15 135.2 13.2 225 590-837 48-326 (329)
146 2je0_A Acidic leucine-rich nuc 99.2 3.2E-11 1.1E-15 120.1 9.5 121 731-861 16-148 (149)
147 2wfh_A SLIT homolog 2 protein 99.2 1.1E-10 3.7E-15 121.8 13.5 106 732-844 31-138 (193)
148 1w8a_A SLIT protein; signaling 99.2 1.7E-10 5.8E-15 120.2 12.9 109 733-848 30-142 (192)
149 1w8a_A SLIT protein; signaling 99.1 1.2E-10 4.1E-15 121.4 11.0 123 594-725 11-137 (192)
150 2wfh_A SLIT homolog 2 protein 99.1 3E-10 1E-14 118.4 11.4 123 594-725 13-137 (193)
151 1a9n_A U2A', U2A'; complex (nu 99.1 8.7E-11 3E-15 120.6 6.8 125 591-725 19-151 (176)
152 2chg_A Replication factor C sm 99.1 2.9E-09 9.9E-14 113.3 18.9 189 180-391 12-204 (226)
153 2o6r_A Variable lymphocyte rec 99.1 6.9E-10 2.4E-14 113.9 13.0 110 732-848 28-140 (177)
154 2o6r_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 111.5 13.5 126 672-824 12-139 (177)
155 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 111.4 12.2 103 734-845 14-118 (174)
156 3g39_A Variable lymphocyte rec 99.0 1.7E-09 5.9E-14 110.1 12.4 105 734-847 11-117 (170)
157 1ds9_A Outer arm dynein; leuci 99.0 3E-12 1E-16 134.4 -8.8 130 680-838 38-180 (198)
158 4fdw_A Leucine rich hypothetic 98.9 3.5E-08 1.2E-12 114.9 19.7 215 592-844 136-357 (401)
159 3sb4_A Hypothetical leucine ri 98.9 4.3E-09 1.5E-13 119.7 11.5 236 553-816 48-328 (329)
160 1sxj_B Activator 1 37 kDa subu 98.9 2E-08 6.9E-13 113.7 16.8 188 181-392 17-211 (323)
161 1ds9_A Outer arm dynein; leuci 98.9 1.1E-11 3.7E-16 130.1 -9.8 136 686-849 14-157 (198)
162 4fdw_A Leucine rich hypothetic 98.8 1.2E-07 3.9E-12 110.5 19.8 226 592-863 114-355 (401)
163 1hqc_A RUVB; extended AAA-ATPa 98.8 2.1E-07 7.1E-12 105.4 20.7 267 181-491 8-310 (324)
164 2r9u_A Variable lymphocyte rec 98.8 2.8E-08 9.5E-13 101.5 11.9 90 732-828 33-124 (174)
165 1iqp_A RFCS; clamp loader, ext 98.8 6.7E-08 2.3E-12 109.6 16.3 188 181-392 21-213 (327)
166 3g39_A Variable lymphocyte rec 98.8 3.2E-08 1.1E-12 100.7 11.9 87 732-825 30-118 (170)
167 2ifg_A High affinity nerve gro 98.7 4.8E-08 1.6E-12 111.9 11.4 102 736-845 12-116 (347)
168 3un9_A NLR family member X1; l 98.6 5.7E-09 2E-13 120.4 -0.2 153 689-844 71-251 (372)
169 1jr3_A DNA polymerase III subu 98.5 1.1E-06 3.8E-11 101.5 17.2 196 181-391 12-221 (373)
170 2chq_A Replication factor C sm 98.5 1.1E-06 3.9E-11 98.9 16.9 180 181-390 13-203 (319)
171 3un9_A NLR family member X1; l 98.5 5.3E-09 1.8E-13 120.6 -4.1 74 747-823 175-253 (372)
172 2ifg_A High affinity nerve gro 98.4 5.7E-07 1.9E-11 102.9 11.7 75 742-823 42-117 (347)
173 3pfi_A Holliday junction ATP-d 98.4 1.3E-05 4.5E-10 91.0 22.3 257 181-485 25-320 (338)
174 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.9E-10 93.7 20.8 66 542-622 59-126 (394)
175 3te6_A Regulatory protein SIR3 98.4 7.5E-06 2.6E-10 90.8 18.1 163 186-360 21-212 (318)
176 1jbk_A CLPB protein; beta barr 98.4 4.3E-06 1.5E-10 86.2 15.2 51 182-234 19-69 (195)
177 3d8b_A Fidgetin-like protein 1 98.4 9.1E-06 3.1E-10 93.0 19.3 203 158-392 62-296 (357)
178 3h4m_A Proteasome-activating n 98.4 8E-06 2.7E-10 90.4 17.9 181 181-390 13-230 (285)
179 3bos_A Putative DNA replicatio 98.3 1E-06 3.4E-11 94.8 10.0 174 182-390 25-216 (242)
180 1sxj_D Activator 1 41 kDa subu 98.3 3.8E-06 1.3E-10 96.2 15.4 197 181-390 33-234 (353)
181 1sxj_A Activator 1 95 kDa subu 98.3 1.2E-05 4.1E-10 96.8 18.7 192 181-390 35-252 (516)
182 1d2n_A N-ethylmaleimide-sensit 98.3 3.3E-05 1.1E-09 84.8 20.0 200 185-412 33-264 (272)
183 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.9E-05 1.3E-09 83.6 19.7 182 184-390 5-221 (262)
184 4fs7_A Uncharacterized protein 98.2 3.6E-05 1.2E-09 89.5 20.0 96 734-841 255-352 (394)
185 2ra8_A Uncharacterized protein 98.2 1.4E-07 4.7E-12 107.8 -0.6 60 784-843 250-318 (362)
186 2ra8_A Uncharacterized protein 98.2 3.1E-07 1.1E-11 105.0 2.2 57 807-863 250-317 (362)
187 2z4s_A Chromosomal replication 98.2 2.3E-05 7.9E-10 92.1 17.7 181 183-388 103-303 (440)
188 3b9p_A CG5977-PA, isoform A; A 98.2 4.4E-05 1.5E-09 85.0 19.0 196 166-391 3-233 (297)
189 3eie_A Vacuolar protein sortin 98.2 0.0001 3.4E-09 83.0 21.6 182 181-391 14-228 (322)
190 2qp9_X Vacuolar protein sortin 98.2 6.4E-05 2.2E-09 85.8 20.2 183 181-391 47-261 (355)
191 3uk6_A RUVB-like 2; hexameric 98.1 4.9E-05 1.7E-09 87.4 18.5 201 184-390 43-302 (368)
192 1sxj_E Activator 1 40 kDa subu 98.1 1.8E-05 6.2E-10 90.5 14.7 200 181-390 10-236 (354)
193 2zan_A Vacuolar protein sortin 98.1 7.4E-05 2.5E-09 88.0 20.0 186 180-390 129-344 (444)
194 1l8q_A Chromosomal replication 98.1 7E-05 2.4E-09 84.5 18.9 178 183-386 9-203 (324)
195 1xwi_A SKD1 protein; VPS4B, AA 98.1 5E-05 1.7E-09 85.4 17.0 182 182-391 9-223 (322)
196 3syl_A Protein CBBX; photosynt 98.0 6.3E-05 2.2E-09 84.2 16.6 151 186-361 32-219 (309)
197 3pvs_A Replication-associated 98.0 5.1E-05 1.8E-09 89.0 16.3 179 181-389 22-213 (447)
198 3u61_B DNA polymerase accessor 98.0 3.9E-05 1.4E-09 86.5 14.1 176 181-387 22-212 (324)
199 4gt6_A Cell surface protein; l 98.0 0.00048 1.6E-08 79.9 23.5 261 543-841 52-343 (394)
200 4h09_A Hypothetical leucine ri 97.9 0.00052 1.8E-08 79.1 21.6 268 544-839 59-340 (379)
201 3vfd_A Spastin; ATPase, microt 97.9 0.00016 5.5E-09 83.7 17.2 184 180-391 110-326 (389)
202 3cf0_A Transitional endoplasmi 97.9 0.00012 4E-09 81.6 15.4 155 182-360 12-200 (301)
203 2p65_A Hypothetical protein PF 97.8 6.2E-05 2.1E-09 76.9 10.6 50 183-234 20-69 (187)
204 1in4_A RUVB, holliday junction 97.8 0.0011 3.8E-08 74.8 21.9 261 182-487 22-319 (334)
205 1a5t_A Delta prime, HOLB; zinc 97.8 0.0002 6.8E-09 81.0 15.0 173 191-390 8-204 (334)
206 1sxj_C Activator 1 40 kDa subu 97.8 0.0003 1E-08 79.8 15.9 184 181-387 21-208 (340)
207 4b4t_J 26S protease regulatory 97.7 0.00073 2.5E-08 76.8 18.4 170 185-383 148-353 (405)
208 1io0_A Tropomodulin; LRR prote 97.7 7E-06 2.4E-10 84.5 1.0 92 749-843 59-162 (185)
209 4h09_A Hypothetical leucine ri 97.7 0.0036 1.2E-07 71.9 23.9 276 548-870 40-339 (379)
210 4gt6_A Cell surface protein; l 97.7 0.00067 2.3E-08 78.6 17.5 85 749-843 282-368 (394)
211 3n70_A Transport activator; si 97.7 6.5E-05 2.2E-09 73.7 7.4 47 186-232 2-48 (145)
212 3hu3_A Transitional endoplasmi 97.6 0.00046 1.6E-08 81.7 15.4 179 184-390 203-414 (489)
213 4b4t_H 26S protease regulatory 97.6 0.0011 3.8E-08 76.4 17.8 170 185-383 209-414 (467)
214 2bjv_A PSP operon transcriptio 97.6 0.00055 1.9E-08 74.6 14.6 49 185-233 6-54 (265)
215 2w58_A DNAI, primosome compone 97.6 5.1E-05 1.7E-09 79.1 5.8 61 183-243 23-89 (202)
216 4b4t_L 26S protease subunit RP 97.6 0.0015 5E-08 75.6 18.2 171 184-383 180-386 (437)
217 3ec2_A DNA replication protein 97.6 0.00033 1.1E-08 71.3 11.1 49 185-233 10-63 (180)
218 4b4t_M 26S protease regulatory 97.5 0.00069 2.3E-08 78.2 14.8 172 183-383 179-386 (434)
219 1lv7_A FTSH; alpha/beta domain 97.5 0.00061 2.1E-08 73.8 13.8 155 181-359 8-195 (257)
220 3e4g_A ATP synthase subunit S, 97.5 4E-05 1.4E-09 76.9 3.9 83 756-846 62-153 (176)
221 4fcw_A Chaperone protein CLPB; 97.5 0.00067 2.3E-08 75.8 14.2 50 186-235 18-74 (311)
222 3e4g_A ATP synthase subunit S, 97.5 1.4E-05 4.8E-10 80.2 0.3 73 655-729 81-154 (176)
223 3pxg_A Negative regulator of g 97.5 0.00071 2.4E-08 80.1 15.0 151 182-359 177-338 (468)
224 1qvr_A CLPB protein; coiled co 97.5 0.00036 1.2E-08 89.2 12.2 51 182-234 167-217 (854)
225 4b4t_K 26S protease regulatory 97.4 0.0018 6.1E-08 74.7 16.5 170 185-383 172-378 (428)
226 1ojl_A Transcriptional regulat 97.4 0.0014 4.9E-08 72.7 15.1 48 185-232 2-49 (304)
227 4b4t_I 26S protease regulatory 97.4 0.0019 6.7E-08 73.6 15.8 170 185-383 182-387 (437)
228 2ce7_A Cell division protein F 97.4 0.0028 9.6E-08 74.4 17.6 175 183-384 14-221 (476)
229 1ofh_A ATP-dependent HSL prote 97.4 0.00039 1.3E-08 77.5 9.8 48 186-233 16-75 (310)
230 2r62_A Cell division protease 97.4 0.00014 4.7E-09 79.6 5.7 154 182-359 8-196 (268)
231 3rw6_A Nuclear RNA export fact 97.3 0.00017 5.8E-09 78.0 5.2 43 753-800 168-210 (267)
232 3pxi_A Negative regulator of g 97.3 0.0018 6.2E-08 81.7 15.4 151 182-359 177-338 (758)
233 2gno_A DNA polymerase III, gam 97.3 0.0013 4.4E-08 73.0 12.0 145 189-359 1-152 (305)
234 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0022 7.6E-08 81.0 15.5 154 183-359 184-362 (758)
235 1io0_A Tropomodulin; LRR prote 97.2 5.6E-05 1.9E-09 77.6 0.5 93 749-844 30-135 (185)
236 3rw6_A Nuclear RNA export fact 97.2 0.00022 7.6E-09 77.1 4.9 66 783-849 167-237 (267)
237 3co5_A Putative two-component 97.1 0.00021 7.3E-09 69.8 2.9 47 186-232 5-51 (143)
238 3t15_A Ribulose bisphosphate c 97.1 0.0038 1.3E-07 68.9 13.4 29 207-235 35-63 (293)
239 3m6a_A ATP-dependent protease 97.0 0.0029 9.9E-08 76.2 12.7 50 186-235 82-135 (543)
240 2c9o_A RUVB-like 1; hexameric 96.9 0.0056 1.9E-07 72.2 13.8 51 183-233 35-88 (456)
241 2kjq_A DNAA-related protein; s 96.9 0.0016 5.6E-08 63.9 7.4 37 207-243 35-71 (149)
242 1ixz_A ATP-dependent metallopr 96.9 0.02 6.9E-07 61.5 16.6 152 182-359 13-199 (254)
243 3cf2_A TER ATPase, transitiona 96.8 0.0018 6E-08 80.5 8.8 150 185-359 204-385 (806)
244 1iy2_A ATP-dependent metallopr 96.8 0.017 5.8E-07 63.1 15.8 154 182-359 37-223 (278)
245 3pxi_A Negative regulator of g 96.8 0.0038 1.3E-07 78.8 11.8 149 185-359 491-675 (758)
246 2x8a_A Nuclear valosin-contain 96.7 0.017 5.8E-07 62.9 14.8 151 185-359 10-191 (274)
247 2r44_A Uncharacterized protein 96.7 0.0066 2.3E-07 68.3 11.5 47 185-235 27-73 (331)
248 2qgz_A Helicase loader, putati 96.6 0.0073 2.5E-07 67.1 10.7 60 184-243 123-188 (308)
249 1eiw_A Hypothetical protein MT 96.4 0.0028 9.4E-08 58.0 4.5 72 8-102 3-74 (111)
250 2dhr_A FTSH; AAA+ protein, hex 96.3 0.027 9.1E-07 66.5 14.1 152 183-359 29-214 (499)
251 1um8_A ATP-dependent CLP prote 96.3 0.018 6.1E-07 66.0 12.3 26 208-233 72-97 (376)
252 1ypw_A Transitional endoplasmi 96.3 0.016 5.4E-07 73.2 12.6 152 184-359 203-385 (806)
253 1ye8_A Protein THEP1, hypothet 96.1 0.085 2.9E-06 53.1 14.9 24 210-233 2-25 (178)
254 2cvh_A DNA repair and recombin 96.0 0.012 4.2E-07 61.5 7.9 45 196-243 8-52 (220)
255 1qvr_A CLPB protein; coiled co 95.9 0.025 8.7E-07 72.1 12.0 50 185-234 558-614 (854)
256 1r6b_X CLPA protein; AAA+, N-t 95.7 0.011 3.8E-07 74.6 7.5 48 185-232 458-512 (758)
257 3lw7_A Adenylate kinase relate 95.5 0.081 2.8E-06 52.7 11.8 20 209-228 2-21 (179)
258 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0056 1.9E-07 67.2 2.6 25 207-231 122-146 (331)
259 1zu4_A FTSY; GTPase, signal re 95.3 0.061 2.1E-06 59.8 10.5 105 114-235 15-132 (320)
260 1pgv_A TMD-1, tropomodulin TMD 95.2 0.0058 2E-07 62.4 1.9 33 786-818 98-135 (197)
261 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.019 6.7E-07 60.5 6.1 37 207-243 22-58 (235)
262 1j8m_F SRP54, signal recogniti 95.2 0.044 1.5E-06 60.2 9.0 35 208-242 98-132 (297)
263 1vma_A Cell division protein F 95.1 0.12 3.9E-06 57.0 12.2 44 192-235 82-131 (306)
264 3hr8_A Protein RECA; alpha and 95.0 0.048 1.6E-06 61.3 8.7 50 194-243 46-96 (356)
265 1jr3_D DNA polymerase III, del 94.9 0.38 1.3E-05 54.0 16.1 156 207-389 17-183 (343)
266 3rfe_A Platelet glycoprotein I 94.9 0.039 1.3E-06 52.5 6.5 54 789-844 11-67 (130)
267 1g5t_A COB(I)alamin adenosyltr 94.9 0.042 1.4E-06 55.8 7.0 35 209-243 29-63 (196)
268 2eyu_A Twitching motility prot 94.8 0.011 3.8E-07 63.8 2.8 112 207-330 24-136 (261)
269 3jvv_A Twitching mobility prot 94.7 0.015 5E-07 65.8 3.6 110 209-330 124-234 (356)
270 3c8u_A Fructokinase; YP_612366 94.7 0.029 9.9E-07 58.3 5.5 40 194-233 8-47 (208)
271 1rz3_A Hypothetical protein rb 94.6 0.058 2E-06 55.6 7.4 45 190-234 3-48 (201)
272 2b8t_A Thymidine kinase; deoxy 94.6 0.013 4.5E-07 61.3 2.5 109 208-327 12-126 (223)
273 3cf2_A TER ATPase, transitiona 94.4 0.063 2.1E-06 66.7 8.4 150 185-359 477-661 (806)
274 1qhx_A CPT, protein (chloramph 94.4 0.017 5.7E-07 58.2 2.7 25 209-233 4-28 (178)
275 3io5_A Recombination and repai 94.3 0.16 5.4E-06 55.5 10.3 48 195-243 12-65 (333)
276 3umf_A Adenylate kinase; rossm 94.3 0.024 8.3E-07 59.1 3.8 27 206-232 27-53 (217)
277 1u0j_A DNA replication protein 94.2 0.22 7.7E-06 53.1 11.0 39 194-232 90-128 (267)
278 1xp8_A RECA protein, recombina 94.1 0.14 4.9E-06 57.8 10.0 53 191-243 56-109 (366)
279 3hws_A ATP-dependent CLP prote 94.1 0.034 1.2E-06 63.3 4.9 48 186-233 16-76 (363)
280 2zr9_A Protein RECA, recombina 94.1 0.23 7.8E-06 55.9 11.5 50 194-243 46-96 (349)
281 3kb2_A SPBC2 prophage-derived 94.0 0.025 8.4E-07 56.5 3.2 25 209-233 2-26 (173)
282 3hyn_A Putative signal transdu 94.0 0.12 4.1E-06 50.7 7.6 105 9-118 5-133 (189)
283 1u94_A RECA protein, recombina 94.0 0.2 6.7E-06 56.5 10.7 53 191-243 45-98 (356)
284 3dm5_A SRP54, signal recogniti 93.9 0.39 1.3E-05 55.3 13.3 36 207-242 99-134 (443)
285 2xxa_A Signal recognition part 93.9 0.12 4.3E-06 59.7 9.0 29 207-235 99-127 (433)
286 3bh0_A DNAB-like replicative h 93.8 0.11 3.7E-06 57.7 8.2 70 189-266 50-119 (315)
287 1odf_A YGR205W, hypothetical 3 93.8 0.063 2.1E-06 58.8 6.1 30 205-234 28-57 (290)
288 2ga8_A Hypothetical 39.9 kDa p 93.8 0.052 1.8E-06 60.4 5.5 49 188-236 2-52 (359)
289 3vaa_A Shikimate kinase, SK; s 93.8 0.029 1E-06 57.8 3.3 27 207-233 24-50 (199)
290 3trf_A Shikimate kinase, SK; a 93.7 0.03 1E-06 56.8 3.2 26 208-233 5-30 (185)
291 3nbx_X ATPase RAVA; AAA+ ATPas 93.6 0.046 1.6E-06 64.6 4.9 43 186-232 23-65 (500)
292 3sr0_A Adenylate kinase; phosp 93.6 0.065 2.2E-06 55.4 5.4 89 210-308 2-94 (206)
293 1nks_A Adenylate kinase; therm 93.5 0.064 2.2E-06 54.5 5.2 26 209-234 2-27 (194)
294 3uie_A Adenylyl-sulfate kinase 93.5 0.071 2.4E-06 54.8 5.5 27 207-233 24-50 (200)
295 1pgv_A TMD-1, tropomodulin TMD 93.4 0.022 7.6E-07 58.1 1.5 90 751-843 37-137 (197)
296 3e70_C DPA, signal recognition 93.4 0.14 4.7E-06 57.0 8.0 29 207-235 128-156 (328)
297 1zuh_A Shikimate kinase; alpha 93.3 0.042 1.4E-06 54.8 3.3 26 208-233 7-32 (168)
298 3kl4_A SRP54, signal recogniti 93.2 0.25 8.5E-06 56.9 10.1 36 207-242 96-131 (433)
299 1ly1_A Polynucleotide kinase; 93.1 0.048 1.7E-06 54.8 3.5 22 209-230 3-24 (181)
300 3tlx_A Adenylate kinase 2; str 93.0 0.083 2.8E-06 56.3 5.3 40 193-232 14-53 (243)
301 2yvu_A Probable adenylyl-sulfa 93.0 0.088 3E-06 53.3 5.3 28 207-234 12-39 (186)
302 1sky_E F1-ATPase, F1-ATP synth 93.0 0.16 5.5E-06 58.7 7.9 32 209-240 152-183 (473)
303 2rhm_A Putative kinase; P-loop 93.0 0.068 2.3E-06 54.4 4.4 25 208-232 5-29 (193)
304 2ewv_A Twitching motility prot 93.0 0.051 1.7E-06 61.9 3.8 110 207-328 135-245 (372)
305 1kag_A SKI, shikimate kinase I 92.9 0.037 1.3E-06 55.4 2.3 25 209-233 5-29 (173)
306 1xjc_A MOBB protein homolog; s 92.9 0.087 3E-06 52.4 4.9 29 207-235 3-31 (169)
307 3b9q_A Chloroplast SRP recepto 92.9 0.18 6.1E-06 55.5 7.9 36 207-243 99-134 (302)
308 1zp6_A Hypothetical protein AT 92.9 0.052 1.8E-06 55.3 3.4 25 207-231 8-32 (191)
309 2yhs_A FTSY, cell division pro 92.9 0.18 6.3E-06 58.6 8.3 36 207-243 292-327 (503)
310 3iij_A Coilin-interacting nucl 92.8 0.041 1.4E-06 55.5 2.4 25 208-232 11-35 (180)
311 1g8p_A Magnesium-chelatase 38 92.7 0.064 2.2E-06 60.5 4.1 50 182-233 21-70 (350)
312 2ze6_A Isopentenyl transferase 92.7 0.06 2E-06 57.8 3.6 25 209-233 2-26 (253)
313 2og2_A Putative signal recogni 92.7 0.44 1.5E-05 53.6 10.8 35 207-242 156-190 (359)
314 1kht_A Adenylate kinase; phosp 92.6 0.06 2.1E-06 54.7 3.5 26 209-234 4-29 (192)
315 3rfe_A Platelet glycoprotein I 92.6 0.16 5.6E-06 48.1 6.2 36 787-822 32-68 (130)
316 3t61_A Gluconokinase; PSI-biol 92.6 0.047 1.6E-06 56.2 2.6 25 208-232 18-42 (202)
317 1ex7_A Guanylate kinase; subst 92.6 0.036 1.2E-06 56.2 1.6 28 209-236 2-29 (186)
318 4eun_A Thermoresistant glucoki 92.6 0.085 2.9E-06 54.3 4.5 26 207-232 28-53 (200)
319 2jaq_A Deoxyguanosine kinase; 92.6 0.057 2E-06 55.5 3.2 24 210-233 2-25 (205)
320 1via_A Shikimate kinase; struc 92.6 0.058 2E-06 54.1 3.1 24 210-233 6-29 (175)
321 1knq_A Gluconate kinase; ALFA/ 92.5 0.084 2.9E-06 52.9 4.3 25 208-232 8-32 (175)
322 2bdt_A BH3686; alpha-beta prot 92.5 0.094 3.2E-06 53.3 4.7 31 209-243 3-33 (189)
323 2iyv_A Shikimate kinase, SK; t 92.4 0.05 1.7E-06 55.1 2.5 24 210-233 4-27 (184)
324 2q6t_A DNAB replication FORK h 92.4 0.26 8.7E-06 57.6 8.9 71 189-267 182-253 (444)
325 3fwy_A Light-independent proto 92.4 0.11 3.8E-06 57.4 5.4 38 206-243 46-83 (314)
326 1kgd_A CASK, peripheral plasma 92.3 0.063 2.2E-06 54.2 3.1 26 208-233 5-30 (180)
327 1tev_A UMP-CMP kinase; ploop, 92.3 0.079 2.7E-06 53.9 3.8 24 209-232 4-27 (196)
328 2c95_A Adenylate kinase 1; tra 92.3 0.07 2.4E-06 54.5 3.4 25 208-232 9-33 (196)
329 1tue_A Replication protein E1; 92.2 0.11 3.9E-06 52.9 4.7 46 188-234 39-84 (212)
330 1ny5_A Transcriptional regulat 92.1 2.1 7.3E-05 48.7 16.0 47 186-232 138-184 (387)
331 2bwj_A Adenylate kinase 5; pho 92.1 0.077 2.6E-06 54.3 3.5 25 209-233 13-37 (199)
332 1nn5_A Similar to deoxythymidy 92.1 0.12 4.1E-06 53.6 5.0 29 208-236 9-37 (215)
333 1e6c_A Shikimate kinase; phosp 92.1 0.06 2.1E-06 53.7 2.6 25 209-233 3-27 (173)
334 2plr_A DTMP kinase, probable t 92.1 0.12 4.1E-06 53.4 5.0 28 209-236 5-32 (213)
335 1y63_A LMAJ004144AAA protein; 92.0 0.08 2.7E-06 53.6 3.5 24 208-231 10-33 (184)
336 2r6a_A DNAB helicase, replicat 92.0 0.73 2.5E-05 53.9 12.2 63 194-264 190-253 (454)
337 3cm0_A Adenylate kinase; ATP-b 92.0 0.084 2.9E-06 53.4 3.6 25 208-232 4-28 (186)
338 4a1f_A DNAB helicase, replicat 92.0 0.2 7E-06 55.7 6.9 73 187-267 26-98 (338)
339 2pt5_A Shikimate kinase, SK; a 91.9 0.084 2.9E-06 52.4 3.4 24 210-233 2-25 (168)
340 3dzd_A Transcriptional regulat 91.9 2.3 8E-05 48.0 15.9 48 185-232 129-176 (368)
341 1ukz_A Uridylate kinase; trans 91.9 0.099 3.4E-06 53.8 4.1 27 206-232 13-39 (203)
342 1qf9_A UMP/CMP kinase, protein 91.9 0.095 3.3E-06 53.2 3.9 25 208-232 6-30 (194)
343 1uj2_A Uridine-cytidine kinase 91.9 0.087 3E-06 56.4 3.7 28 206-233 20-47 (252)
344 2vli_A Antibiotic resistance p 91.8 0.061 2.1E-06 54.2 2.3 25 209-233 6-30 (183)
345 1uf9_A TT1252 protein; P-loop, 91.8 0.099 3.4E-06 53.7 3.9 26 206-231 6-31 (203)
346 2j37_W Signal recognition part 91.8 0.55 1.9E-05 55.2 10.6 36 207-242 100-135 (504)
347 3a00_A Guanylate kinase, GMP k 91.8 0.063 2.2E-06 54.5 2.3 28 209-236 2-29 (186)
348 1n0w_A DNA repair protein RAD5 91.7 0.24 8.3E-06 52.3 7.0 48 196-243 12-65 (243)
349 3p32_A Probable GTPase RV1496/ 91.7 0.26 9E-06 55.6 7.6 41 195-235 66-106 (355)
350 1cke_A CK, MSSA, protein (cyti 91.7 0.093 3.2E-06 55.0 3.6 24 209-232 6-29 (227)
351 2dr3_A UPF0273 protein PH0284; 91.6 0.14 4.9E-06 54.2 5.1 45 199-243 14-58 (247)
352 2qor_A Guanylate kinase; phosp 91.6 0.077 2.6E-06 54.8 2.8 27 207-233 11-37 (204)
353 2if2_A Dephospho-COA kinase; a 91.6 0.091 3.1E-06 54.1 3.3 22 209-230 2-23 (204)
354 2cdn_A Adenylate kinase; phosp 91.6 0.097 3.3E-06 53.8 3.5 26 208-233 20-45 (201)
355 3tau_A Guanylate kinase, GMP k 91.6 0.081 2.8E-06 54.8 2.9 28 207-234 7-34 (208)
356 2wwf_A Thymidilate kinase, put 91.5 0.1 3.5E-06 54.0 3.6 28 208-235 10-37 (212)
357 3asz_A Uridine kinase; cytidin 91.5 0.12 4.2E-06 53.5 4.2 27 207-233 5-31 (211)
358 4a74_A DNA repair and recombin 91.4 0.19 6.4E-06 52.7 5.7 37 196-232 13-49 (231)
359 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.12 4E-06 55.7 4.1 26 208-233 4-29 (260)
360 1puj_A YLQF, conserved hypothe 91.4 1.6 5.4E-05 47.4 13.2 49 52-106 13-61 (282)
361 3bgw_A DNAB-like replicative h 91.4 0.28 9.7E-06 57.1 7.6 70 189-266 179-248 (444)
362 2pbr_A DTMP kinase, thymidylat 91.4 0.11 3.6E-06 53.0 3.5 25 210-234 2-26 (195)
363 2qt1_A Nicotinamide riboside k 91.4 0.11 3.8E-06 53.6 3.7 26 206-231 19-44 (207)
364 2grj_A Dephospho-COA kinase; T 91.3 0.11 3.9E-06 52.9 3.7 26 207-232 11-36 (192)
365 3tqc_A Pantothenate kinase; bi 91.3 0.17 6E-06 55.9 5.4 47 187-233 69-117 (321)
366 1aky_A Adenylate kinase; ATP:A 91.2 0.099 3.4E-06 54.6 3.2 26 208-233 4-29 (220)
367 1g41_A Heat shock protein HSLU 91.1 0.13 4.5E-06 59.4 4.3 50 186-235 16-77 (444)
368 3tr0_A Guanylate kinase, GMP k 91.1 0.11 3.6E-06 53.5 3.2 25 208-232 7-31 (205)
369 2j41_A Guanylate kinase; GMP, 91.0 0.11 3.8E-06 53.4 3.3 25 208-232 6-30 (207)
370 2bbw_A Adenylate kinase 4, AK4 91.0 0.12 4E-06 55.2 3.6 25 208-232 27-51 (246)
371 1jjv_A Dephospho-COA kinase; P 91.0 0.11 3.8E-06 53.5 3.3 22 209-230 3-24 (206)
372 3ney_A 55 kDa erythrocyte memb 91.0 0.1 3.4E-06 53.4 2.8 27 207-233 18-44 (197)
373 2pez_A Bifunctional 3'-phospho 90.9 0.15 5E-06 51.3 4.0 27 208-234 5-31 (179)
374 4gp7_A Metallophosphoesterase; 90.8 0.098 3.3E-06 52.3 2.6 21 208-228 9-29 (171)
375 3nwj_A ATSK2; P loop, shikimat 90.8 0.095 3.2E-06 55.9 2.6 25 209-233 49-73 (250)
376 3gmt_A Adenylate kinase; ssgci 90.8 0.4 1.4E-05 50.1 7.2 23 210-232 10-32 (230)
377 2z0h_A DTMP kinase, thymidylat 90.8 0.3 1E-05 49.7 6.3 25 210-234 2-26 (197)
378 1gtv_A TMK, thymidylate kinase 90.8 0.088 3E-06 54.6 2.3 25 210-234 2-26 (214)
379 1v5w_A DMC1, meiotic recombina 90.8 0.48 1.6E-05 53.2 8.4 49 195-243 109-163 (343)
380 1q57_A DNA primase/helicase; d 90.7 0.72 2.5E-05 54.8 10.5 56 205-267 239-295 (503)
381 1gvn_B Zeta; postsegregational 90.7 0.19 6.5E-06 54.9 4.9 26 207-232 32-57 (287)
382 3fb4_A Adenylate kinase; psych 90.7 0.13 4.6E-06 53.4 3.6 23 210-232 2-24 (216)
383 2z43_A DNA repair and recombin 90.5 0.35 1.2E-05 53.8 7.1 48 196-243 95-148 (324)
384 3k1j_A LON protease, ATP-depen 90.4 0.14 4.9E-06 62.4 4.0 52 181-236 37-88 (604)
385 1zak_A Adenylate kinase; ATP:A 90.4 0.12 4E-06 54.2 2.8 26 208-233 5-30 (222)
386 1zd8_A GTP:AMP phosphotransfer 90.3 0.13 4.6E-06 53.9 3.2 25 208-232 7-31 (227)
387 2wsm_A Hydrogenase expression/ 90.3 0.21 7.1E-06 52.0 4.7 44 190-235 14-57 (221)
388 4e22_A Cytidylate kinase; P-lo 90.3 0.13 4.4E-06 55.1 3.1 26 208-233 27-52 (252)
389 1m7g_A Adenylylsulfate kinase; 90.3 0.17 5.8E-06 52.4 3.9 26 208-233 25-50 (211)
390 2ffh_A Protein (FFH); SRP54, s 90.1 0.5 1.7E-05 54.3 8.0 29 207-235 97-125 (425)
391 3dl0_A Adenylate kinase; phosp 90.1 0.14 4.9E-06 53.2 3.1 23 210-232 2-24 (216)
392 2jeo_A Uridine-cytidine kinase 90.0 0.19 6.4E-06 53.5 4.1 27 206-232 23-49 (245)
393 3aez_A Pantothenate kinase; tr 90.0 0.19 6.5E-06 55.6 4.2 28 206-233 88-115 (312)
394 1lvg_A Guanylate kinase, GMP k 90.0 0.13 4.6E-06 52.7 2.8 25 209-233 5-29 (198)
395 2hf9_A Probable hydrogenase ni 90.0 0.38 1.3E-05 50.1 6.5 40 194-235 26-65 (226)
396 2p5t_B PEZT; postsegregational 90.0 0.22 7.5E-06 53.3 4.6 27 207-233 31-57 (253)
397 3upu_A ATP-dependent DNA helic 89.9 1.1 3.6E-05 52.6 10.9 29 209-237 46-74 (459)
398 1cr0_A DNA primase/helicase; R 89.9 0.35 1.2E-05 53.0 6.3 38 206-243 33-71 (296)
399 3ake_A Cytidylate kinase; CMP 89.9 0.17 5.7E-06 52.1 3.5 24 210-233 4-27 (208)
400 3d3q_A TRNA delta(2)-isopenten 89.9 0.16 5.6E-06 56.3 3.5 25 209-233 8-32 (340)
401 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.49 1.7E-05 52.7 7.4 88 209-308 172-259 (330)
402 1rj9_A FTSY, signal recognitio 89.8 0.26 8.9E-06 54.2 5.1 36 207-243 101-136 (304)
403 3be4_A Adenylate kinase; malar 89.7 0.16 5.3E-06 53.0 3.1 24 209-232 6-29 (217)
404 2f6r_A COA synthase, bifunctio 89.6 0.19 6.6E-06 54.7 3.8 23 207-229 74-96 (281)
405 2zts_A Putative uncharacterize 89.6 0.19 6.6E-06 53.3 3.8 38 206-243 28-66 (251)
406 1htw_A HI0065; nucleotide-bind 89.5 0.32 1.1E-05 47.7 5.0 27 206-232 31-57 (158)
407 3r20_A Cytidylate kinase; stru 89.5 0.19 6.4E-06 52.9 3.4 25 209-233 10-34 (233)
408 1svm_A Large T antigen; AAA+ f 89.4 0.29 9.9E-06 55.4 5.2 32 201-232 162-193 (377)
409 1e4v_A Adenylate kinase; trans 89.4 0.2 7E-06 51.9 3.7 23 210-232 2-24 (214)
410 2ehv_A Hypothetical protein PH 89.4 0.27 9.3E-06 52.1 4.8 37 207-243 29-66 (251)
411 2v3c_C SRP54, signal recogniti 89.3 0.47 1.6E-05 54.8 7.0 35 208-242 99-133 (432)
412 2ck3_D ATP synthase subunit be 89.3 0.76 2.6E-05 53.0 8.5 35 208-242 153-188 (482)
413 1znw_A Guanylate kinase, GMP k 89.3 0.17 5.7E-06 52.3 2.9 25 208-232 20-44 (207)
414 3zvl_A Bifunctional polynucleo 89.3 0.51 1.7E-05 54.5 7.3 27 206-232 256-282 (416)
415 2v54_A DTMP kinase, thymidylat 89.2 0.18 6.1E-06 51.8 3.1 24 209-232 5-28 (204)
416 2px0_A Flagellar biosynthesis 89.2 0.31 1E-05 53.4 5.1 28 207-234 104-131 (296)
417 1vht_A Dephospho-COA kinase; s 89.2 0.22 7.5E-06 51.8 3.8 23 208-230 4-26 (218)
418 1np6_A Molybdopterin-guanine d 89.2 0.33 1.1E-05 48.6 4.8 28 208-235 6-33 (174)
419 2f1r_A Molybdopterin-guanine d 89.1 0.16 5.4E-06 50.7 2.5 26 209-234 3-28 (171)
420 2xb4_A Adenylate kinase; ATP-b 89.1 0.21 7.2E-06 52.3 3.5 23 210-232 2-24 (223)
421 1ak2_A Adenylate kinase isoenz 89.0 0.2 7E-06 52.7 3.4 25 209-233 17-41 (233)
422 3end_A Light-independent proto 89.0 0.35 1.2E-05 53.3 5.4 38 206-243 39-76 (307)
423 3crm_A TRNA delta(2)-isopenten 88.9 0.18 6.2E-06 55.6 2.9 24 209-232 6-29 (323)
424 1cp2_A CP2, nitrogenase iron p 88.9 0.38 1.3E-05 51.8 5.5 35 209-243 2-36 (269)
425 1z6g_A Guanylate kinase; struc 88.8 0.17 5.7E-06 52.9 2.5 25 208-232 23-47 (218)
426 2i3b_A HCR-ntpase, human cance 88.7 0.21 7E-06 50.8 3.0 24 210-233 3-26 (189)
427 1a7j_A Phosphoribulokinase; tr 88.7 0.16 5.4E-06 55.6 2.3 27 207-233 4-30 (290)
428 3a8t_A Adenylate isopentenyltr 88.6 0.15 5.1E-06 56.5 1.9 25 208-232 40-64 (339)
429 1yrb_A ATP(GTP)binding protein 88.5 0.41 1.4E-05 51.2 5.5 27 207-233 13-39 (262)
430 3cr8_A Sulfate adenylyltranfer 88.4 0.46 1.6E-05 56.7 6.2 28 207-234 368-395 (552)
431 1fx0_B ATP synthase beta chain 88.3 0.39 1.3E-05 55.7 5.2 36 208-243 165-201 (498)
432 1sq5_A Pantothenate kinase; P- 88.2 0.3 1E-05 53.9 4.2 28 206-233 78-105 (308)
433 3e1s_A Exodeoxyribonuclease V, 88.2 1.1 3.8E-05 53.9 9.5 34 209-242 205-238 (574)
434 2i1q_A DNA repair and recombin 88.2 0.68 2.3E-05 51.4 7.1 38 195-232 85-122 (322)
435 2r8r_A Sensor protein; KDPD, P 88.0 0.41 1.4E-05 49.7 4.7 26 210-235 8-33 (228)
436 2afh_E Nitrogenase iron protei 88.0 0.47 1.6E-05 51.8 5.5 35 208-242 2-36 (289)
437 1ls1_A Signal recognition part 87.9 0.45 1.5E-05 52.1 5.3 35 207-242 97-131 (295)
438 1s96_A Guanylate kinase, GMP k 87.9 0.26 8.8E-06 51.4 3.2 27 207-233 15-41 (219)
439 1q3t_A Cytidylate kinase; nucl 87.9 0.3 1E-05 51.6 3.8 27 206-232 14-40 (236)
440 3exa_A TRNA delta(2)-isopenten 87.8 0.24 8.3E-06 54.1 2.9 25 208-232 3-27 (322)
441 1nlf_A Regulatory protein REPA 87.6 0.43 1.5E-05 51.8 4.9 27 208-234 30-56 (279)
442 1ltq_A Polynucleotide kinase; 87.6 0.3 1E-05 53.7 3.7 23 209-231 3-25 (301)
443 2p67_A LAO/AO transport system 87.5 0.74 2.5E-05 51.5 7.0 31 205-235 53-83 (341)
444 3lnc_A Guanylate kinase, GMP k 87.5 0.18 6.3E-06 53.0 1.8 25 208-232 27-52 (231)
445 2orw_A Thymidine kinase; TMTK, 87.4 0.49 1.7E-05 47.8 4.9 26 209-234 4-29 (184)
446 3foz_A TRNA delta(2)-isopenten 87.3 0.3 1E-05 53.3 3.3 26 207-232 9-34 (316)
447 1g8f_A Sulfate adenylyltransfe 87.2 0.44 1.5E-05 56.0 5.0 42 193-234 380-421 (511)
448 2j9r_A Thymidine kinase; TK1, 87.1 1.3 4.4E-05 45.5 7.8 110 207-327 27-138 (214)
449 1pzn_A RAD51, DNA repair and r 87.1 0.37 1.3E-05 54.2 4.1 37 196-232 119-155 (349)
450 4eaq_A DTMP kinase, thymidylat 87.0 0.62 2.1E-05 48.9 5.5 28 207-234 25-52 (229)
451 3cmu_A Protein RECA, recombina 87.0 1.1 3.6E-05 61.0 8.9 48 196-243 1414-1462(2050)
452 3b85_A Phosphate starvation-in 86.8 0.28 9.5E-06 50.7 2.6 23 209-231 23-45 (208)
453 3cnl_A YLQF, putative uncharac 86.8 0.99 3.4E-05 48.4 7.1 28 53-80 12-39 (262)
454 2onk_A Molybdate/tungstate ABC 86.8 0.3 1E-05 51.7 3.0 25 206-231 23-47 (240)
455 4edh_A DTMP kinase, thymidylat 86.7 0.95 3.3E-05 46.8 6.7 28 208-235 6-33 (213)
456 3hjn_A DTMP kinase, thymidylat 86.6 0.85 2.9E-05 46.5 6.2 33 210-242 2-34 (197)
457 2qmh_A HPR kinase/phosphorylas 86.6 0.29 9.8E-06 49.7 2.5 24 209-232 35-58 (205)
458 2axn_A 6-phosphofructo-2-kinas 86.4 0.6 2E-05 55.5 5.6 30 207-236 34-63 (520)
459 3lda_A DNA repair protein RAD5 86.4 0.8 2.7E-05 52.3 6.4 50 194-243 164-219 (400)
460 2pcj_A ABC transporter, lipopr 86.3 0.3 1E-05 51.1 2.6 23 208-230 30-52 (224)
461 3eph_A TRNA isopentenyltransfe 86.2 0.43 1.5E-05 54.1 3.9 25 209-233 3-27 (409)
462 3tif_A Uncharacterized ABC tra 86.0 0.31 1.1E-05 51.5 2.6 23 208-230 31-53 (235)
463 4dzz_A Plasmid partitioning pr 86.0 0.6 2.1E-05 47.7 4.8 35 209-243 2-37 (206)
464 2qm8_A GTPase/ATPase; G protei 86.0 1 3.5E-05 50.3 6.9 31 204-234 51-81 (337)
465 3vr4_D V-type sodium ATPase su 85.8 0.7 2.4E-05 53.0 5.5 26 209-234 152-177 (465)
466 1oix_A RAS-related protein RAB 85.8 0.41 1.4E-05 48.5 3.3 24 208-231 29-52 (191)
467 3fdi_A Uncharacterized protein 85.7 0.42 1.4E-05 49.0 3.3 25 209-233 7-31 (201)
468 2ocp_A DGK, deoxyguanosine kin 85.6 0.44 1.5E-05 50.4 3.6 26 208-233 2-27 (241)
469 2dyk_A GTP-binding protein; GT 85.5 0.48 1.6E-05 46.0 3.5 22 209-230 2-23 (161)
470 3cmw_A Protein RECA, recombina 85.4 1.4 4.7E-05 59.1 8.7 56 188-243 711-767 (1706)
471 2cbz_A Multidrug resistance-as 85.4 0.35 1.2E-05 51.1 2.6 25 208-232 31-55 (237)
472 2d2e_A SUFC protein; ABC-ATPas 85.2 0.41 1.4E-05 51.0 3.1 24 208-231 29-52 (250)
473 4akg_A Glutathione S-transfera 85.2 2 6.9E-05 60.4 10.5 138 209-359 1268-1431(2695)
474 3gfo_A Cobalt import ATP-bindi 85.2 0.36 1.2E-05 52.2 2.6 23 208-230 34-56 (275)
475 2v9p_A Replication protein E1; 85.0 0.63 2.1E-05 51.0 4.4 27 206-232 124-150 (305)
476 1ypw_A Transitional endoplasmi 84.9 0.41 1.4E-05 60.2 3.4 53 184-236 476-539 (806)
477 1b0u_A Histidine permease; ABC 84.9 0.37 1.3E-05 51.8 2.6 25 207-231 31-55 (262)
478 2zu0_C Probable ATP-dependent 84.9 0.43 1.5E-05 51.4 3.1 24 208-231 46-69 (267)
479 3ea0_A ATPase, para family; al 84.8 0.9 3.1E-05 47.9 5.6 36 207-242 3-40 (245)
480 2ged_A SR-beta, signal recogni 84.8 0.76 2.6E-05 46.3 4.8 24 207-230 47-70 (193)
481 1ji0_A ABC transporter; ATP bi 84.8 0.38 1.3E-05 50.9 2.6 23 208-230 32-54 (240)
482 4g1u_C Hemin import ATP-bindin 84.8 0.38 1.3E-05 51.8 2.5 24 208-231 37-60 (266)
483 1mv5_A LMRA, multidrug resista 84.7 0.41 1.4E-05 50.8 2.8 24 207-230 27-50 (243)
484 3v9p_A DTMP kinase, thymidylat 84.6 1 3.4E-05 47.1 5.6 28 208-235 25-52 (227)
485 2olj_A Amino acid ABC transpor 84.6 0.39 1.3E-05 51.5 2.6 25 207-231 49-73 (263)
486 1g6h_A High-affinity branched- 84.6 0.39 1.3E-05 51.4 2.6 23 208-230 33-55 (257)
487 1sgw_A Putative ABC transporte 84.6 0.34 1.2E-05 50.3 2.0 23 209-231 36-58 (214)
488 2pze_A Cystic fibrosis transme 84.5 0.4 1.4E-05 50.3 2.6 25 208-232 34-58 (229)
489 2wji_A Ferrous iron transport 84.5 0.53 1.8E-05 46.3 3.3 22 209-230 4-25 (165)
490 3kjh_A CO dehydrogenase/acetyl 84.4 0.75 2.6E-05 48.7 4.7 33 211-243 3-35 (254)
491 3lv8_A DTMP kinase, thymidylat 84.4 1.2 4E-05 46.9 6.0 35 208-242 27-62 (236)
492 3ld9_A DTMP kinase, thymidylat 84.4 1.2 4.3E-05 46.2 6.2 28 207-234 20-47 (223)
493 2f9l_A RAB11B, member RAS onco 84.4 0.47 1.6E-05 48.4 3.0 24 208-231 5-28 (199)
494 2ff7_A Alpha-hemolysin translo 84.3 0.41 1.4E-05 50.9 2.6 23 208-230 35-57 (247)
495 3io3_A DEHA2D07832P; chaperone 84.3 1 3.4E-05 50.5 5.8 38 206-243 16-55 (348)
496 3fkq_A NTRC-like two-domain pr 84.3 0.87 3E-05 51.7 5.5 38 206-243 141-179 (373)
497 1vpl_A ABC transporter, ATP-bi 84.2 0.42 1.4E-05 51.1 2.6 24 207-230 40-63 (256)
498 4hlc_A DTMP kinase, thymidylat 84.2 0.85 2.9E-05 46.9 4.8 29 209-237 3-31 (205)
499 3zq6_A Putative arsenical pump 84.1 1 3.6E-05 49.9 5.9 36 208-243 14-49 (324)
500 4tmk_A Protein (thymidylate ki 84.0 1.3 4.6E-05 45.7 6.2 27 209-235 4-30 (213)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-48 Score=387.00 Aligned_cols=171 Identities=42% Similarity=0.722 Sum_probs=144.7
Q ss_pred CCCCCCCCCccEEeccccccccCchHHHHHHHHhcCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCC
Q 046888 1 MASSSSSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKW 79 (1170)
Q Consensus 1 m~~~~~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w 79 (1170)
|+|| ..++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|.|
T Consensus 1 msss-~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~W 79 (176)
T 3jrn_A 1 MSSH-TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSW 79 (176)
T ss_dssp -------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHH
T ss_pred CCCC-CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChh
Confidence 6554 689999999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhhcCCcEEEEEEeeeCccccccccccHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCcccCCCch
Q 046888 80 CPNELVNILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAETVQKWRDVMTQTSYLSGHESTKIRPE 159 (1170)
Q Consensus 80 cl~El~~~~~~~~~~~~~v~pif~~v~ps~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~~~~e 159 (1170)
|++||++|++|.+.++++|+||||+|+|++||+|+|+||+||++|+++ .+.+++++||+||++||+++|| +. .++|
T Consensus 80 Cl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~-~~-~~~e 155 (176)
T 3jrn_A 80 CLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGD-CS-GDDD 155 (176)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCE-EC-CSCH
T ss_pred HHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccce-ec-CCCH
Confidence 999999999999889999999999999999999999999999999986 5789999999999999999999 66 4679
Q ss_pred hHHHHHHHHhhhhhcccc
Q 046888 160 AMLVEVIVKDILKKLECT 177 (1170)
Q Consensus 160 ~~~i~~iv~~i~~~l~~~ 177 (1170)
+++|++||++|.++| ++
T Consensus 156 ~~~i~~Iv~~v~~~l-~~ 172 (176)
T 3jrn_A 156 SKLVDKIANEISNKK-TI 172 (176)
T ss_dssp HHHHHHHHHHHHTTC-C-
T ss_pred HHHHHHHHHHHHHHh-cC
Confidence 999999999999999 55
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.1e-46 Score=376.59 Aligned_cols=167 Identities=42% Similarity=0.743 Sum_probs=156.6
Q ss_pred CCCCccEEeccccccccCchHHHHHHHHhcCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcHHHH
Q 046888 6 SSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCPNEL 84 (1170)
Q Consensus 6 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El 84 (1170)
+.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|.||++||
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL 111 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL 111 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred CCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence 468999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc-CCcEEEEEEeeeCccccccccccHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccCCCCcccCC-CchhHH
Q 046888 85 VNILKCKNL-NGQIVIPIYYHVSPSDVRKQTGTFGEGFVRLEQQFKEKAETVQKWRDVMTQTSYLSGHESTKI-RPEAML 162 (1170)
Q Consensus 85 ~~~~~~~~~-~~~~v~pif~~v~ps~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~~-~~e~~~ 162 (1170)
++|++|.+. ++++|+||||+|+|++||+|+|.||+||++|++++ ..+++++||.||++||+++|| +..+ ..|+++
T Consensus 112 ~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~-~~~~~~~e~~~ 188 (204)
T 3ozi_A 112 AEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGW-HIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBE-EECTTSCHHHH
T ss_pred HHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCce-ecCCCCCHHHH
Confidence 999999864 68999999999999999999999999999999876 458999999999999999999 6555 678999
Q ss_pred HHHHHHhhhhhcc
Q 046888 163 VEVIVKDILKKLE 175 (1170)
Q Consensus 163 i~~iv~~i~~~l~ 175 (1170)
|++||++|+++|+
T Consensus 189 i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 189 ADKVSADIWSHIS 201 (204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999983
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-39 Score=398.43 Aligned_cols=298 Identities=16% Similarity=0.156 Sum_probs=235.3
Q ss_pred ccchhHHHHHHHHhhcC-CCCeEEEEEEecCCChHHHHHHHHHH----HHhccCCceEEEEechhhhhcC--cCHHHHHH
Q 046888 188 VGLSSRIECIKSLLCTG-LPDVRIVGIWGMGGIGKTTIVKALFN----QISNEFEGKCFIENVREEIENG--VGLVHLHK 260 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~--~~~~~l~~ 260 (1170)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|++++|+. +++. +++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-----vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-----DSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-----CCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-----ECCCCCCCHHHHHH
Confidence 49999999999999754 44689999999999999999999997 6889999999995 4444 47889999
Q ss_pred HHHHHHhcCcc---cCCCCC-----hhHHHHHHhcCC-CeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHH
Q 046888 261 QVVSLLLGERL---ETGGPN-----IPAYALERLRRT-KVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLR 331 (1170)
Q Consensus 261 ~ll~~l~~~~~---~~~~~~-----l~~~l~~~L~~k-k~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~ 331 (1170)
.++.++..... ....+. +...+.+.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++.
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHH
Confidence 99999987532 112222 466778899996 999999999998876 3332 28999999999999988
Q ss_pred HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCHHHHHHHHHH-Hh
Q 046888 332 KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQKSKQDWENVLDN-LK 410 (1170)
Q Consensus 332 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~-l~ 410 (1170)
.++.. ..+|+|++|+.+||++||.+++|+... ...+.+++++|+++|+|+||||+++|+.|+.+. .+|...+.. +.
T Consensus 280 ~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~ 356 (549)
T 2a5y_B 280 AASQT-CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLE 356 (549)
T ss_dssp GCCSC-EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHH
T ss_pred HcCCC-CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhh
Confidence 76521 267999999999999999999976532 367788999999999999999999999998774 233333322 22
Q ss_pred hcCChhhHHHHHHHHHhcCCHHHHHHHh-----------hcccccCCCCHHHHHHHHhhC--CCCH-----------HHH
Q 046888 411 QISGASRIYKLLRISYEELTFEEKSIFL-----------DIACFFKGEGKDRVLMLLHDR--QYNV-----------TQA 466 (1170)
Q Consensus 411 ~~~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~l~~~~--~~~~-----------~~~ 466 (1170)
..+. ..+..++++||+.|+++.|.||+ +||+||+++.++ +.+|.++ |+.. ..+
T Consensus 357 ~~~~-~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~ 433 (549)
T 2a5y_B 357 SRGL-VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADR 433 (549)
T ss_dssp HHCS-STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHH
T ss_pred cccH-HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHH
Confidence 2233 56777788888888888888888 999999998877 6778777 5432 247
Q ss_pred HHHHHhcCCcEEe----CCeEEehHHHHHHHHHHHhhhcc
Q 046888 467 LSVLIDKSLIIEH----NNRLHMHELLQEMGQEIVRQEDI 502 (1170)
Q Consensus 467 l~~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~~ 502 (1170)
++.|+++|||+.. ..+|+|||++|++|++++.+++.
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999999876 24799999999999998877653
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.6e-34 Score=383.95 Aligned_cols=307 Identities=22% Similarity=0.281 Sum_probs=242.4
Q ss_pred CCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHH---HhccCCceEEEEechhhhhcCcCH
Q 046888 179 MSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQ---ISNEFEGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~ 255 (1170)
..|..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+|+.++.+ . .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-Q-DKSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS-C-CHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC-c-CchHH
Confidence 46677788999999999999999776678999999999999999999999985 3556766664433332 1 12233
Q ss_pred HHHHHHHHHHHhcCcccC-----CCCChhHHHHHHhcCC--CeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 046888 256 VHLHKQVVSLLLGERLET-----GGPNIPAYALERLRRT--KVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQ 328 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~-----~~~~l~~~l~~~L~~k--k~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1170)
......++..+....... ..+.+.+.+...+.++ |+||||||||+.++++.+ ++||+||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 444556666666543221 2233444555666655 999999999998876553 68999999999998
Q ss_pred HHHH-hCCCCcceEeecC-CCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCHHHHHHHH
Q 046888 329 VLRK-QGVKDEHVYEVER-LNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQKSKQDWENVL 406 (1170)
Q Consensus 329 v~~~-~~~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l 406 (1170)
++.. .+.. ..+++++ |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.++ ..|+..+
T Consensus 269 ~~~~~~~~~--~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 269 VTDSVMGPK--HVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp TTTTCCSCB--CCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred HHHhhcCCc--eEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 8754 3333 7899996 99999999999988432 334456789999999999999999999998766 5799999
Q ss_pred HHHhhcCC----------hhhHHHHHHHHHhcCCHHHHHHHhhcccccCCC--CHHHHHHHHhhCCCCHHHHHHHHHhcC
Q 046888 407 DNLKQISG----------ASRIYKLLRISYEELTFEEKSIFLDIACFFKGE--GKDRVLMLLHDRQYNVTQALSVLIDKS 474 (1170)
Q Consensus 407 ~~l~~~~~----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~s 474 (1170)
+.+..... ...+..+|++||+.|++++|.||+++|+||+++ +.+.++.+|..++..++.+++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 98865431 246999999999999999999999999999986 457789999888778889999999999
Q ss_pred CcEEe-CC---eEEehHHHHHHHHHHHhhh
Q 046888 475 LIIEH-NN---RLHMHELLQEMGQEIVRQE 500 (1170)
Q Consensus 475 Li~~~-~~---~~~mHdll~~~~~~i~~~e 500 (1170)
||+.. ++ +|+||+++|+++++...++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99987 34 4999999999999987654
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.3e-33 Score=340.60 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=215.0
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHH--HHhccCCc-eEEEEechhhhhcCcCHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFN--QISNEFEG-KCFIENVREEIENGVGLVHLHKQ 261 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~-~~~~~~~~~~~~~~~~~~~l~~~ 261 (1170)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+. +++..+...+...
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-----Vs~~~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-----CCCSSSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-----eCCCCCHHHHHHH
Confidence 34599999999999998743 3489999999999999999999997 57889997 66765 5556666666666
Q ss_pred HHHHHhcCc---ccC-C--------CCChhHHHHHHh---cCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCC
Q 046888 262 VVSLLLGER---LET-G--------GPNIPAYALERL---RRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRD 326 (1170)
Q Consensus 262 ll~~l~~~~---~~~-~--------~~~l~~~l~~~L---~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~ 326 (1170)
++..+.... ... + .+.+...+.+.| .++|+||||||||+.++|+.+. +|||||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 666443211 000 0 112234455544 6799999999999999888752 79999999999
Q ss_pred hhHHHHhCCCCcceEeec------CCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCC--C
Q 046888 327 KQVLRKQGVKDEHVYEVE------RLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQK--S 398 (1170)
Q Consensus 327 ~~v~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~--~ 398 (1170)
+.++..+... ..|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +
T Consensus 275 ~~Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCC--eEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9987644322 356677 999999999999984 322 12233333 999999999999999976 6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHH-HHHHhhcccccCCCC--HHHHHHHHhhCCC-CHHHHHHHHHhcC
Q 046888 399 KQDWENVLDNLKQISGASRIYKLLRISYEELTFEE-KSIFLDIACFFKGEG--KDRVLMLLHDRQY-NVTQALSVLIDKS 474 (1170)
Q Consensus 399 ~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~--~~~l~~l~~~~~~-~~~~~l~~L~~~s 474 (1170)
.++|+.. .. ..+..+|++||+.|++++ |+||+++|+||++.. .+.+..+|.+.+. .++.+++.|+++|
T Consensus 344 ~eeW~~~-------~~-~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRS 415 (1221)
T 1vt4_I 344 WDNWKHV-------NC-DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415 (1221)
T ss_dssp HHHHHHC-------SC-HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSS
T ss_pred HHHHhcC-------Ch-hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhC
Confidence 7788753 23 789999999999999999 999999999999875 4568889988753 4678899999999
Q ss_pred CcEEe--CCeEEehHHHHHHH
Q 046888 475 LIIEH--NNRLHMHELLQEMG 493 (1170)
Q Consensus 475 Li~~~--~~~~~mHdll~~~~ 493 (1170)
||+.. .++|+|||++++++
T Consensus 416 LLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 416 LVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSBCSSSSEEBCCCHHHHHH
T ss_pred CEEEeCCCCEEEehHHHHHHh
Confidence 99986 46899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=3.3e-32 Score=337.94 Aligned_cols=338 Identities=20% Similarity=0.252 Sum_probs=245.7
Q ss_pred CCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH---hccCC-ceEEEEechhhhhcCcC
Q 046888 179 MSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI---SNEFE-GKCFIENVREEIENGVG 254 (1170)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~~~~~~~ 254 (1170)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. +.+|+ .++|+. +.. . +
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~----~-~ 191 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGK----Q-D 191 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EES----C-C
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCC----C-c
Confidence 456677889999999999999997655678999999999999999999999753 77896 566765 222 2 2
Q ss_pred HHHHHH---HHHHHHhcCccc--C---CCCChhHHHHHHhcC--CCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEe
Q 046888 255 LVHLHK---QVVSLLLGERLE--T---GGPNIPAYALERLRR--TKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTT 324 (1170)
Q Consensus 255 ~~~l~~---~ll~~l~~~~~~--~---~~~~l~~~l~~~L~~--kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTT 324 (1170)
...+.. .+...+...... . ....+...+.+.+.+ +++||||||||+..+++. +++|++|||||
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTs 264 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEEC
Confidence 222333 233344321111 1 112234445555655 799999999999776553 36899999999
Q ss_pred CChhHHHHhCCCCcceEee---cCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCHHH
Q 046888 325 RDKQVLRKQGVKDEHVYEV---ERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQKSKQD 401 (1170)
Q Consensus 325 R~~~v~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~ 401 (1170)
|++.++..++ . ..|++ ++|+.+||++||...++. +.....+.+.+|+++|+|+||||+++|+.|+... ..
T Consensus 265 R~~~~~~~~~-~--~~~~v~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~ 337 (591)
T 1z6t_A 265 RDKSVTDSVM-G--PKYVVPVESSLGKEKGLEILSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NR 337 (591)
T ss_dssp SCGGGGTTCC-S--CEEEEECCSSCCHHHHHHHHHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TC
T ss_pred CCcHHHHhcC-C--CceEeecCCCCCHHHHHHHHHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hh
Confidence 9998866543 2 45666 489999999999999854 2223345788999999999999999999998764 47
Q ss_pred HHHHHHHHhhcC----------ChhhHHHHHHHHHhcCCHHHHHHHhhcccccCCCC--HHHHHHHHhhCCCCHHHHHHH
Q 046888 402 WENVLDNLKQIS----------GASRIYKLLRISYEELTFEEKSIFLDIACFFKGEG--KDRVLMLLHDRQYNVTQALSV 469 (1170)
Q Consensus 402 w~~~l~~l~~~~----------~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~l~~~~~~~~~~~l~~ 469 (1170)
|...++.+.... ....+..++..||+.|++++|.||+++|+||.+.. .+.+..+|......+...++.
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~ 417 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQE 417 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHH
Confidence 998888887532 12579999999999999999999999999998754 567888887765567888999
Q ss_pred HHhcCCcEEe--C--CeEEehHHHHHHHHHHHhhh------------c-------ccCCCCcceeecccccccccccccc
Q 046888 470 LIDKSLIIEH--N--NRLHMHELLQEMGQEIVRQE------------D-------IKKPGKRSRLWHHKDVRHVLKHNEG 526 (1170)
Q Consensus 470 L~~~sLi~~~--~--~~~~mHdll~~~~~~i~~~e------------~-------~~~~~~~srl~~~~~i~~~l~~~~~ 526 (1170)
|+++|||... + .+|+||+++|+++++....+ . ...++.+..+|..+.++|++..+..
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 9999999876 2 27999999999998873211 0 1123344556666677777665543
Q ss_pred cccccceeccc
Q 046888 527 TDAIEGIFLNL 537 (1170)
Q Consensus 527 ~~~i~~i~l~l 537 (1170)
. .+..++.++
T Consensus 498 ~-~~~~l~~~~ 507 (591)
T 1z6t_A 498 K-ELCALMFSL 507 (591)
T ss_dssp H-HHHHHHSCH
T ss_pred H-HHHHHHhCH
Confidence 3 233444443
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=1.5e-28 Score=246.34 Aligned_cols=117 Identities=20% Similarity=0.392 Sum_probs=111.2
Q ss_pred CCCccEEeccccccccCchHHHHHHHHhcCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcHHHHH
Q 046888 7 SCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCPNELV 85 (1170)
Q Consensus 7 ~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~ 85 (1170)
.++|||||||+|+| +..|++||+++|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.||.
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 48999999999999 67899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEEEeeeCccccccccccHHHHHHHH
Q 046888 86 NILKCKNLNGQIVIPIYYHVSPSDVRKQTGTFGEGFVRL 124 (1170)
Q Consensus 86 ~~~~~~~~~~~~v~pif~~v~ps~vr~~~g~~~~~~~~~ 124 (1170)
.|++|...++++|+||||+|+|++||+|.|.|+++|+..
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999998778889999999999999999999999876544
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5.2e-26 Score=288.55 Aligned_cols=264 Identities=16% Similarity=0.167 Sum_probs=186.6
Q ss_pred cCccccCCCCCcccccc--cccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccc
Q 046888 614 NLIELNLPFSKVVQIWE--GKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTN 691 (1170)
Q Consensus 614 ~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~ 691 (1170)
+|++|+|++|.+..+|. .+..+++|+.|+|++|.+. .+|.++.+++|+.|+| ++|.+..+|..+..+++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~L--------s~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKL--------DYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEEC--------CSSCCSCCCTTSCEECT
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEEC--------cCCccccchHHHhhccc
Confidence 55555555555555554 4555555555555555543 4444445555554444 44667788888999998
Q ss_pred -cceeecccccccccccccccCCCc--ccEEecCCCCCchhhh-----------ccccEEEccCcCCcccCcccc-CCCC
Q 046888 692 -LEYLYINRCKRLKRVSTSICKLKS--LIWLCLNECLNLESFL-----------ESLKKINLGRTTVTELPSSFE-NIEG 756 (1170)
Q Consensus 692 -L~~L~L~~~~~l~~lp~~i~~L~~--L~~L~l~~c~~l~~~~-----------~~L~~L~L~~~~i~~lp~~l~-~l~~ 756 (1170)
|+.|+|++|... .+|..++.++. |+.|++++|.....+| .+|+.|++++|.++.+|..+. .+++
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~ 698 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence 999999998755 78887776654 9999999885433221 258999999999999988764 8899
Q ss_pred CCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccC--CCCCCCEEECcCCCCccccccccCCCCC
Q 046888 757 LGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIG--CLPSLEWLELRENNFESLPVSIKQLSRL 834 (1170)
Q Consensus 757 L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L 834 (1170)
|+.|+|++|.+..............+.++++|+.|+|++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|
T Consensus 699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L 778 (876)
T 4ecn_A 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778 (876)
T ss_dssp CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTC
T ss_pred CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCC
Confidence 99999999987632211111111112344589999999999999999887 8999999999999999999999999999
Q ss_pred CEEEecC------CCCCCCCCCC---ccccceeccccccccCCCCCCCCCchhhhhhhhhccccccCCCc
Q 046888 835 KRLDLSN------CSMLQSIPEL---PPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYDDE 895 (1170)
Q Consensus 835 ~~L~L~~------c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~l 895 (1170)
+.|+|++ |...+.+|.. .++|+.|++++|.- ..+|.. .. +.|+.|++.+|+-.
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~---l~----~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK---LT----PQLYILDIADNPNI 840 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC---CC----SSSCEEECCSCTTC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh---hc----CCCCEEECCCCCCC
Confidence 9999977 5566677753 36788888888854 555542 21 25788888888644
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3.3e-26 Score=285.60 Aligned_cols=296 Identities=19% Similarity=0.216 Sum_probs=205.3
Q ss_pred ecCCCc--CCCCCeeEEEecCCCCC-CCCCCC-CCCcCccccCCCCC-cc--ccccccccc------ccceeecCCCCCC
Q 046888 582 FLDGLD--YLPEKLRYLHLHKYPLR-TLPSNF-KPKNLIELNLPFSK-VV--QIWEGKKKA------FKLKSINLSHSQY 648 (1170)
Q Consensus 582 ~~~~l~--~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~-i~--~l~~~~~~l------~~L~~L~Ls~~~~ 648 (1170)
++..+. .++ +|++|++++|.+. .+|..+ .+++|++|++++|+ ++ .+|..+..+ ++|++|+|++|.+
T Consensus 239 ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 444444 443 6666666666644 456555 56666666666665 55 366655554 6666666666665
Q ss_pred CccCCC---CCCCCccccccccCC---------------cccccCCCcccccccccccccc-cceeeccccccccccccc
Q 046888 649 LIRIPD---PSEAPNLERINLWNC---------------THLNLCDTAIEEVPSSVECLTN-LEYLYINRCKRLKRVSTS 709 (1170)
Q Consensus 649 l~~~p~---~~~l~~L~~L~L~~c---------------~~L~l~~n~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~ 709 (1170)
. .+|. ++.+++|+.|+++++ +.|++++|.+..+|..++.+++ |++|++++|... .+|..
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 5 5554 566666666665542 2335566777888888888888 888888888755 77877
Q ss_pred ccCCC--cccEEecCCCCCchhhh-------------ccccEEEccCcCCcccCccc-cCCCCCCEEEccCCCCCCcCcC
Q 046888 710 ICKLK--SLIWLCLNECLNLESFL-------------ESLKKINLGRTTVTELPSSF-ENIEGLGTLGLERSQLPHLLSG 773 (1170)
Q Consensus 710 i~~L~--~L~~L~l~~c~~l~~~~-------------~~L~~L~L~~~~i~~lp~~l-~~l~~L~~L~L~~~~~~~~~~~ 773 (1170)
++.++ +|+.|++++|......| ..|+.|++++|.++.+|..+ ..+++|+.|+|++|.+..
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~---- 471 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---- 471 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB----
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC----
Confidence 76654 88888888875433222 25788888888888888764 458889999998888763
Q ss_pred CcccCcccc-------CCCCCCCEEeCCCCCCCCCCcccC--CCCCCCEEECcCCCCccccccccCCCCCCEEEec----
Q 046888 774 LVSLPASLL-------SGLFSLNWLNLNNCALTAIPEEIG--CLPSLEWLELRENNFESLPVSIKQLSRLKRLDLS---- 840 (1170)
Q Consensus 774 l~~lp~~~l-------~~l~~L~~L~L~~~~l~~ip~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~---- 840 (1170)
+|...+ .++++|+.|+|++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|+
T Consensus 472 ---i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 472 ---IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp ---CCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBC
T ss_pred ---cCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcc
Confidence 333322 233489999999999988888887 8899999999999998888888889999999995
Q ss_pred --CCCCCCCCCCCc---cccceeccccccccCCCCCCCCCchhhhhhhhhccccccCCCc
Q 046888 841 --NCSMLQSIPELP---PSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYDDE 895 (1170)
Q Consensus 841 --~c~~l~~lp~l~---~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~l 895 (1170)
+|...+.+|... ++|+.|++++|.- +.+|.. .. +.|+.|++.+++-.
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~---~~----~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK---IT----PNISVLDIKDNPNI 600 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC---CC----TTCCEEECCSCTTC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh---Hh----CcCCEEECcCCCCc
Confidence 455566777533 6788888887754 555442 11 35777887777544
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=8.5e-26 Score=288.56 Aligned_cols=281 Identities=23% Similarity=0.307 Sum_probs=144.1
Q ss_pred chhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCC-CCCCCC-C-CCcCccccCCCC
Q 046888 547 SRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLR-TLPSNF-K-PKNLIELNLPFS 623 (1170)
Q Consensus 547 ~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~-~~~L~~L~L~~~ 623 (1170)
+..|.++++|+.|+++++... ...+.. .+ ++|++|++++|.+. .+|..+ . +++|++|+|++|
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~------------~~~~~~--~l-~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFV------------GPIPPL--PL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCE------------ESCCCC--CC-TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred cHHHhcCCCCCEEECCCCccc------------CccCcc--cc-CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 345667788888888765421 011111 11 25555555555555 445444 2 255555555555
Q ss_pred Ccc-cccccccccccceeecCCCCCCCccCCC--CCCCCccccccccCC-----------------cccccCCCccc-cc
Q 046888 624 KVV-QIWEGKKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNC-----------------THLNLCDTAIE-EV 682 (1170)
Q Consensus 624 ~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c-----------------~~L~l~~n~i~-~l 682 (1170)
.+. .+|..+..+++|++|+|++|.+.+.+|. +..+++|++|+++++ +.|++++|.+. .+
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 555 4445555555555555555554444443 455555555554432 22233444443 23
Q ss_pred cccccc--ccccceeecccccccccccccccCCCcccEEecCCCCCchhhh------ccccEEEccCcCCc-ccCccccC
Q 046888 683 PSSVEC--LTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFL------ESLKKINLGRTTVT-ELPSSFEN 753 (1170)
Q Consensus 683 p~~i~~--l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~------~~L~~L~L~~~~i~-~lp~~l~~ 753 (1170)
|..+.. +++|+.|++++|...+.+|..++++++|+.|++++|......| +.|+.|++++|.+. .+|..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 444433 4555555555555555555555555555555555553221211 23555555555555 44555555
Q ss_pred CCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCCCEEECcCCCCc-cccccccCC
Q 046888 754 IEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRENNFE-SLPVSIKQL 831 (1170)
Q Consensus 754 l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l 831 (1170)
+++|+.|++++|.+.+ .+|.. +.++++|+.|+|++|++++ +|.+++.+++|+.|+|++|+++ .+|..+..+
T Consensus 465 l~~L~~L~L~~N~l~~------~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 465 VKTLETLILDFNDLTG------EIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CTTCCEEECCSSCCCS------CCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCCceEEEecCCcccC------cCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 5555555555555543 23332 4555555555555555552 5555555555555555555555 455555555
Q ss_pred CCCCEEEecCCCCCCCCC
Q 046888 832 SRLKRLDLSNCSMLQSIP 849 (1170)
Q Consensus 832 ~~L~~L~L~~c~~l~~lp 849 (1170)
++|+.|+|++|+..+.+|
T Consensus 538 ~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp TTCCEEECCSSEEESBCC
T ss_pred CCCCEEECCCCccCCcCC
Confidence 555555555555444443
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1e-25 Score=287.75 Aligned_cols=322 Identities=21% Similarity=0.286 Sum_probs=239.5
Q ss_pred hhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCC-CCCCCC-C--CCcCccccCCCCC
Q 046888 549 AFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLR-TLPSNF-K--PKNLIELNLPFSK 624 (1170)
Q Consensus 549 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~--~~~L~~L~L~~~~ 624 (1170)
.|.++++|+.|+++++. ....++..+..++.+|++|++++|.+. .+|..+ . +.+|++|++++|.
T Consensus 338 ~l~~l~~L~~L~Ls~n~------------l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNE------------FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp HHTTCTTCCEEECCSSE------------EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred HHhcCCCCCEEeCcCCc------------cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 35566666666665442 122344555555557788888877765 344444 2 6678888888888
Q ss_pred cc-cccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccccccccccccceeecccccc
Q 046888 625 VV-QIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKR 702 (1170)
Q Consensus 625 i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~ 702 (1170)
+. .+|..+..+++|++|+|++|.+...+|. +..+++|+.|+++++..- ..+|..++.+++|+.|++++|..
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-------GEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-------SCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-------CcCCHHHcCCCCceEEEecCCcc
Confidence 77 6677788888888888888887766665 677777777777765432 47888899999999999999998
Q ss_pred cccccccccCCCcccEEecCCCCCchhhh------ccccEEEccCcCCc-ccCccccCCCCCCEEEccCCCCCCcCcC-C
Q 046888 703 LKRVSTSICKLKSLIWLCLNECLNLESFL------ESLKKINLGRTTVT-ELPSSFENIEGLGTLGLERSQLPHLLSG-L 774 (1170)
Q Consensus 703 l~~lp~~i~~L~~L~~L~l~~c~~l~~~~------~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~-l 774 (1170)
.+.+|..++++++|+.|++++|.....+| +.|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+. +
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 88899989999999999999986554443 34899999999998 7888999999999999999876532210 0
Q ss_pred ---------------------------------------------------------------cccCccccCCCCCCCEE
Q 046888 775 ---------------------------------------------------------------VSLPASLLSGLFSLNWL 791 (1170)
Q Consensus 775 ---------------------------------------------------------------~~lp~~~l~~l~~L~~L 791 (1170)
..+|.. +..+++|+.|
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~-~~~l~~L~~L 637 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFL 637 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS-CSSSBCCCEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh-hhccccccEE
Confidence 001222 5667899999
Q ss_pred eCCCCCCCC-CCcccCCCCCCCEEECcCCCCc-cccccccCCCCCCEEEecCCCCCCCCCCCc---cccceecccccccc
Q 046888 792 NLNNCALTA-IPEEIGCLPSLEWLELRENNFE-SLPVSIKQLSRLKRLDLSNCSMLQSIPELP---PSLKWLQAGNCKRL 866 (1170)
Q Consensus 792 ~L~~~~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~i~~c~~L 866 (1170)
+|++|++++ +|..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+..+.+|... ++|+.|+++++.--
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999995 8999999999999999999999 899999999999999999999998999754 56778888877654
Q ss_pred CCCCCCCCCchhhhhhhhhccccccCCCcc
Q 046888 867 QSLPEIPSRPEEIDASLLQKLSKYSYDDEV 896 (1170)
Q Consensus 867 ~~l~~~~~~~~~~~~~~L~~L~~~~c~~l~ 896 (1170)
..+|... .+..+..+.+.+++.+-
T Consensus 718 g~iP~~~------~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 718 GPIPEMG------QFETFPPAKFLNNPGLC 741 (768)
T ss_dssp EECCSSS------SGGGSCGGGGCSCTEEE
T ss_pred ccCCCch------hhccCCHHHhcCCchhc
Confidence 4454321 12234455566666654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=5.9e-25 Score=278.89 Aligned_cols=294 Identities=16% Similarity=0.191 Sum_probs=171.4
Q ss_pred CeeEEEecCCCCC-CCCCCC-CCCcCccccCCCCC-ccc--ccccccccc-------cceeecCCCCCCCccCCC---CC
Q 046888 592 KLRYLHLHKYPLR-TLPSNF-KPKNLIELNLPFSK-VVQ--IWEGKKKAF-------KLKSINLSHSQYLIRIPD---PS 656 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~-i~~--l~~~~~~l~-------~L~~L~Ls~~~~l~~~p~---~~ 656 (1170)
+|++|++++|.+. .+|..+ .+++|++|+|++|+ +.. +|..+..+. +|+.|+|++|.+. .+|. ++
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 4555555544422 344333 44455555555554 432 444333333 4555555555443 3333 44
Q ss_pred CCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCCCc-ccEEecCCCCCchhhhcc--
Q 046888 657 EAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKS-LIWLCLNECLNLESFLES-- 733 (1170)
Q Consensus 657 ~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~-L~~L~l~~c~~l~~~~~~-- 733 (1170)
++++|+.|+|++ |.+..+| .++.+++|+.|+|++|... .+|..++++++ |+.|++++|. +..+|..
T Consensus 571 ~L~~L~~L~Ls~--------N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~ 639 (876)
T 4ecn_A 571 KMVKLGLLDCVH--------NKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFN 639 (876)
T ss_dssp TCTTCCEEECTT--------SCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCC
T ss_pred cCCCCCEEECCC--------CCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhh
Confidence 444444444433 3345555 5566666666666665543 55555556665 6666666553 2233321
Q ss_pred ------ccEEEccCcCCcccCc----ccc--CCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC
Q 046888 734 ------LKKINLGRTTVTELPS----SFE--NIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI 801 (1170)
Q Consensus 734 ------L~~L~L~~~~i~~lp~----~l~--~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i 801 (1170)
|+.|++++|.+...++ .+. .+++|+.|+|++|.+. .+|...+..+++|+.|+|++|.++.+
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-------KFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------SCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-------ccCHHHHccCCCCCEEECCCCcCCcc
Confidence 5566666666543221 222 2335666666666654 46666566889999999999999988
Q ss_pred CcccCCC--------CCCCEEECcCCCCcccccccc--CCCCCCEEEecCCCCCCCCCCC---ccccceecccccccc--
Q 046888 802 PEEIGCL--------PSLEWLELRENNFESLPVSIK--QLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKRL-- 866 (1170)
Q Consensus 802 p~~l~~l--------~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~L-- 866 (1170)
|..+... ++|+.|+|++|+++.+|..+. .+++|+.|+|++|+... +|.. .++|+.|++++++.+
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 8765543 389999999999999998887 89999999999998655 6643 267888888775421
Q ss_pred -CCCCCCCCCchhhhhhhhhccccccCCCcccccCC-Ccchhhh
Q 046888 867 -QSLPEIPSRPEEIDASLLQKLSKYSYDDEVEDVNG-SSSIRFL 908 (1170)
Q Consensus 867 -~~l~~~~~~~~~~~~~~L~~L~~~~c~~l~~~~~~-~~~l~~l 908 (1170)
.-...+|..+. .++.|+.|.+.+|.- ...|.. .++|+.+
T Consensus 792 N~l~~~ip~~l~--~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~L 832 (876)
T 4ecn_A 792 NRILRQWPTGIT--TCPSLIQLQIGSNDI-RKVDEKLTPQLYIL 832 (876)
T ss_dssp CBCCCCCCTTGG--GCSSCCEEECCSSCC-CBCCSCCCSSSCEE
T ss_pred ccccccChHHHh--cCCCCCEEECCCCCC-CccCHhhcCCCCEE
Confidence 11223443332 345688888888855 555432 2344444
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=7.2e-25 Score=273.56 Aligned_cols=299 Identities=18% Similarity=0.194 Sum_probs=194.6
Q ss_pred ecCCCcCCCCCeeEEEecCCCCCC------------------CCCCCC---CCcCccccCCCCCcc-cccccccccccce
Q 046888 582 FLDGLDYLPEKLRYLHLHKYPLRT------------------LPSNFK---PKNLIELNLPFSKVV-QIWEGKKKAFKLK 639 (1170)
Q Consensus 582 ~~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~~~i~-~l~~~~~~l~~L~ 639 (1170)
++..+..++ +|++|++++|.+.. +|..+. +++|++|+|++|.+. .+|..+..+++|+
T Consensus 198 ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 566677775 89999999999998 998864 899999999999866 7899999999999
Q ss_pred eecCCCCC-CCc-cCCC-CCCC------CccccccccCCcccccCCCccccccc--ccccccccceeecccccccccccc
Q 046888 640 SINLSHSQ-YLI-RIPD-PSEA------PNLERINLWNCTHLNLCDTAIEEVPS--SVECLTNLEYLYINRCKRLKRVST 708 (1170)
Q Consensus 640 ~L~Ls~~~-~l~-~~p~-~~~l------~~L~~L~L~~c~~L~l~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~ 708 (1170)
+|+|++|. +.. .+|. ++.+ ++|++|++++ |.+..+|. .++++++|++|++++|...+.+|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~--------n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY--------NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS--------SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC--------CcCCccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 99999998 665 5665 4443 6777776654 44456666 66666666666666666555666
Q ss_pred cccCCCcccEEecCCCCCchhhh------cc-ccEEEccCcCCcccCccccCCC--CCCEEEccCCCCCCcCc-------
Q 046888 709 SICKLKSLIWLCLNECLNLESFL------ES-LKKINLGRTTVTELPSSFENIE--GLGTLGLERSQLPHLLS------- 772 (1170)
Q Consensus 709 ~i~~L~~L~~L~l~~c~~l~~~~------~~-L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~~~~~~------- 772 (1170)
.++.+++|+.|++++|. +..+| .. |+.|++++|.++.+|..+..++ +|+.|++++|.+.+..+
T Consensus 348 ~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 56666666666666652 11222 12 6666666666666665555433 56666666655543110
Q ss_pred -----------------CCcccCccccCCCCCCCEEeCCCCCCCCCCcccCC--------CCCCCEEECcCCCCcccccc
Q 046888 773 -----------------GLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGC--------LPSLEWLELRENNFESLPVS 827 (1170)
Q Consensus 773 -----------------~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~--------l~~L~~L~L~~n~l~~lp~~ 827 (1170)
.+..+|...+..+++|+.|+|++|.++.+|..+.. +++|+.|+|++|+++.+|..
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 11134554455677777777777777776654432 22777888888877777777
Q ss_pred cc--CCCCCCEEEecCCCCCCCCCCCc---cccceecccccc---ccCCCCCCCCCchhhhhhhhhccccccCCC
Q 046888 828 IK--QLSRLKRLDLSNCSMLQSIPELP---PSLKWLQAGNCK---RLQSLPEIPSRPEEIDASLLQKLSKYSYDD 894 (1170)
Q Consensus 828 l~--~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~i~~c~---~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~ 894 (1170)
+. .+++|+.|+|++|+..+ +|... ++|+.|+++++. ...-...+|.... .+..|+.|++.+|.-
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSNDI 578 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSCC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh--cCCCCCEEECCCCcC
Confidence 76 77788888888777554 65432 566677775543 1111223333332 234566777766644
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=7.2e-24 Score=264.13 Aligned_cols=311 Identities=21% Similarity=0.180 Sum_probs=176.5
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCC-CCCC-C
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTL-PSNF-K 611 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~ 611 (1170)
.++++....-.+.+.+|.++++|++|+++++. .....+..+..++ +|++|++++|.+..+ |..+ .
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------------i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ------------IYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCC------------CCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSS
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCc------------cceeChhhccCcc-ccCeeeCCCCcccccChhhhcc
Confidence 45566555555667788899999999988764 2223344555554 788888888888866 4455 7
Q ss_pred CCcCccccCCCCCcccc-cccccccccceeecCCCCCCCc-cCCCCCCCCccccccccCC----------------c--c
Q 046888 612 PKNLIELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLI-RIPDPSEAPNLERINLWNC----------------T--H 671 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~-~~p~~~~l~~L~~L~L~~c----------------~--~ 671 (1170)
+++|++|++++|.+..+ +..+..+++|++|+|++|.+.. ..|.+..+++|++|+++++ + .
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 88888888888888877 5667888888888888888665 3466666888888877653 1 3
Q ss_pred cccCCCcccccccccccccccceeec----------------------------------------------------cc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYI----------------------------------------------------NR 699 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L----------------------------------------------------~~ 699 (1170)
|++++|.+..+++......+|+.|++ ++
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 44555665555543333333333333 33
Q ss_pred ccccccccccccCCCcccEEecCCCCCchhhh------ccccEEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCc
Q 046888 700 CKRLKRVSTSICKLKSLIWLCLNECLNLESFL------ESLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLS 772 (1170)
Q Consensus 700 ~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~------~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~ 772 (1170)
|......+..++++++|+.|++++|. +..+| +.|+.|++++|.++.+ |..+..+++|+.|++++|.+..
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--- 339 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL--- 339 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC---
T ss_pred CccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc---
Confidence 32222222223444444444444431 22222 1244444444444433 2234444444444444444332
Q ss_pred CCcccCccccCCCCCCCEEeCCCCCCCCC---CcccCCCCCCCEEECcCCCCccc-cccccCCCCCCEEEecCCCCCCCC
Q 046888 773 GLVSLPASLLSGLFSLNWLNLNNCALTAI---PEEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 773 ~l~~lp~~~l~~l~~L~~L~L~~~~l~~i---p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l 848 (1170)
.++...+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|++..+ |..+..+++|+.|+|++|......
T Consensus 340 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 340 ---ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp ---BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred ---ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 23333355556666666666665543 44555666666666666665533 445555666666666666544333
Q ss_pred CC----Cccccceecccccc
Q 046888 849 PE----LPPSLKWLQAGNCK 864 (1170)
Q Consensus 849 p~----l~~~L~~L~i~~c~ 864 (1170)
|. -.++|+.|++.+|.
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCC
T ss_pred cchhhhCcccCCEEECCCCc
Confidence 22 12455566655553
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=5.9e-24 Score=264.89 Aligned_cols=266 Identities=22% Similarity=0.266 Sum_probs=152.9
Q ss_pred CeeEEEecCCCCCCC--CCCCCCCcCccccCCCCCccccc-ccccccccce--eecCCCCCCCccCCCCCCCCccccccc
Q 046888 592 KLRYLHLHKYPLRTL--PSNFKPKNLIELNLPFSKVVQIW-EGKKKAFKLK--SINLSHSQYLIRIPDPSEAPNLERINL 666 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~--~L~Ls~~~~l~~~p~~~~l~~L~~L~L 666 (1170)
+|++|++++|.+..+ |..+.+++|++|++++|.+..++ ..+..+++|+ .|++++|.+....|......+|+.|++
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 677888888777765 55557778888888888777663 4566777777 778888877666666545555666655
Q ss_pred cCC--------------------------------------------cccccCCCcccccccc-cccccccceeeccccc
Q 046888 667 WNC--------------------------------------------THLNLCDTAIEEVPSS-VECLTNLEYLYINRCK 701 (1170)
Q Consensus 667 ~~c--------------------------------------------~~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~ 701 (1170)
.++ +.|++++|.+..++.. ++.+++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 433 2335555666666544 6666777777777664
Q ss_pred ccccccccccCCCcccEEecCCCCCchhh------hccccEEEccCcCCc-ccCc-cccCCCCCCEEEccCCCCCCcCcC
Q 046888 702 RLKRVSTSICKLKSLIWLCLNECLNLESF------LESLKKINLGRTTVT-ELPS-SFENIEGLGTLGLERSQLPHLLSG 773 (1170)
Q Consensus 702 ~l~~lp~~i~~L~~L~~L~l~~c~~l~~~------~~~L~~L~L~~~~i~-~lp~-~l~~l~~L~~L~L~~~~~~~~~~~ 773 (1170)
+..+|..++++++|++|++++|...... .+.|+.|++++|.+. .+|. .+..+++|+.|++++|.+....
T Consensus 290 -l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 366 (606)
T 3t6q_A 290 -LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD-- 366 (606)
T ss_dssp -CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE--
T ss_pred -cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc--
Confidence 3366666666777777777666422211 233666666666655 4443 3566666666666666654311
Q ss_pred CcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccc-c-ccccCCCCCCEEEecCCCCCCCCCC
Q 046888 774 LVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESL-P-VSIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 774 l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~l-p-~~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
..+.. +.++++|+.|++++|.+..+ |..+..+++|+.|+|++|.++.. | ..+..+++|+.|+|++|......|.
T Consensus 367 --~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 367 --CCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp --ESTTT-TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred --Ccchh-cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 00111 44555555555555555542 34455555555555555555432 1 2245555555555555554333332
Q ss_pred C---ccccceeccccc
Q 046888 851 L---PPSLKWLQAGNC 863 (1170)
Q Consensus 851 l---~~~L~~L~i~~c 863 (1170)
. .++|+.|++.+|
T Consensus 444 ~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTTTCTTCCEEECTTC
T ss_pred HHhCCCCCCEEECCCC
Confidence 2 244555555444
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.6e-24 Score=266.89 Aligned_cols=175 Identities=25% Similarity=0.212 Sum_probs=80.3
Q ss_pred cccccccceeecccccccccccccccCCCcccEEecCCCCCchhh----hccccEEEccCcCCccc---CccccCCCCCC
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF----LESLKKINLGRTTVTEL---PSSFENIEGLG 758 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~----~~~L~~L~L~~~~i~~l---p~~l~~l~~L~ 758 (1170)
+..+++|+.|++++|.. +.+|. + .+++|+.|++++|..+..+ .+.|+.|++++|.++.+ |..+..+++|+
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred ccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 44444555555555544 44552 3 5555555555555322221 22355555555555543 44555555555
Q ss_pred EEEccCCCCCCcCcC----------------Cc-ccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCCCEEECcCCC
Q 046888 759 TLGLERSQLPHLLSG----------------LV-SLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRENN 820 (1170)
Q Consensus 759 ~L~L~~~~~~~~~~~----------------l~-~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L~~L~L~~n~ 820 (1170)
.|++++|.+...... +. ..+...+.++++|+.|++++|.++. .|..+..+++|+.|+|++|.
T Consensus 380 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 555555553311000 00 1111124444555555555555443 34444455555555555554
Q ss_pred Ccc--ccccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccccc
Q 046888 821 FES--LPVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNC 863 (1170)
Q Consensus 821 l~~--lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c 863 (1170)
++. +|..+..+++|+.|+|++|...+..|.. .++|+.|++++|
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 442 3444455555555555555443333321 134444444444
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=8.8e-24 Score=248.14 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=102.0
Q ss_pred CeeEEEecCCCCCCCCCC-C-CCCcCccccCCCCCcccccccc-cccccceeecCCCCCCCccCCC-CCCCCcccccccc
Q 046888 592 KLRYLHLHKYPLRTLPSN-F-KPKNLIELNLPFSKVVQIWEGK-KKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW 667 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 667 (1170)
+|++|++++|.+..+|.. + .+++|++|++++|.+..+|..+ ..+++|++|+|++|.+....|. +..+++|++|+++
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 455555555555544332 2 4455555555555555554442 4455555555555544333333 4444444444444
Q ss_pred CCcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhh----hccccEEEccCcC
Q 046888 668 NCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF----LESLKKINLGRTT 743 (1170)
Q Consensus 668 ~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~----~~~L~~L~L~~~~ 743 (1170)
++ .+..++ ++.+++|+.|++++|... . +...++|+.|++++|.. ..+ +..|+.|++++|.
T Consensus 174 ~n--------~l~~~~--~~~l~~L~~L~l~~n~l~-~----~~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 174 SN--------RLTHVD--LSLIPSLFHANVSYNLLS-T----LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNN 237 (390)
T ss_dssp SS--------CCSBCC--GGGCTTCSEEECCSSCCS-E----EECCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSSC
T ss_pred CC--------cCCccc--cccccccceeeccccccc-c----cCCCCcceEEECCCCee-eeccccccccccEEECCCCC
Confidence 32 222221 334445555555544321 1 12233444555444421 111 2234555555554
Q ss_pred CcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcc
Q 046888 744 VTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFES 823 (1170)
Q Consensus 744 i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~ 823 (1170)
++.. ..+..+++|+.|++++|.+.. +++..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.
T Consensus 238 l~~~-~~l~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 238 LTDT-AWLLNYPGLVEVDLSYNELEK-------IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSCCCE-------EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred Cccc-HHHcCCCCccEEECCCCcCCC-------cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee
Confidence 4443 234444555555555554432 11112444445555555555554444444444555555555555554
Q ss_pred ccccccCCCCCCEEEecCCC
Q 046888 824 LPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 824 lp~~l~~l~~L~~L~L~~c~ 843 (1170)
+|..+..+++|+.|+|++|+
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSC
T ss_pred cCccccccCcCCEEECCCCc
Confidence 44444444555555555544
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.8e-24 Score=261.73 Aligned_cols=286 Identities=17% Similarity=0.138 Sum_probs=225.9
Q ss_pred cccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-CCCcCccccC
Q 046888 543 INLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-KPKNLIELNL 620 (1170)
Q Consensus 543 l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L 620 (1170)
-.++...|.++++|+.|+++++.. ....+..+..++ +|++|++++|.+..+|.. | .+++|++|+|
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l------------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQI------------EEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCC------------CEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCHHHHccCCCCcEEECCCCCC------------CCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 345566788899999999987642 222223444444 899999999999988765 3 7899999999
Q ss_pred CCCCcccccccc-cccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccccccccccccceeecc
Q 046888 621 PFSKVVQIWEGK-KKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYIN 698 (1170)
Q Consensus 621 ~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~ 698 (1170)
++|.+..+|..+ ..+++|++|+|++|.+....|. +..+++|+.|+|+++ .+..++ ++.+++|+.|+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--------RLTHVD--LSLIPSLFHANVS 200 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS--------CCSBCC--GGGCTTCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC--------CCCCcC--hhhhhhhhhhhcc
Confidence 999999988774 8899999999999988777665 788888888887764 445554 6678899999999
Q ss_pred cccccccccccccCCCcccEEecCCCCCc---hhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCc
Q 046888 699 RCKRLKRVSTSICKLKSLIWLCLNECLNL---ESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLV 775 (1170)
Q Consensus 699 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l---~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~ 775 (1170)
+|...+ +...++|+.|++++|..- ..++.+|+.|++++|.++.. ..+..+++|+.|+|++|.+.+
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~------ 268 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK------ 268 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE------
T ss_pred cCcccc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCC------
Confidence 875332 345678999999887521 12345699999999999874 678899999999999998864
Q ss_pred ccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCCcccc
Q 046888 776 SLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPELPPSL 855 (1170)
Q Consensus 776 ~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L 855 (1170)
..|. .+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+....-+...++|
T Consensus 269 ~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L 347 (597)
T 3oja_B 269 IMYH-PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 347 (597)
T ss_dssp EESG-GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred CCHH-HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCC
Confidence 2333 388899999999999999999888888999999999999999999889999999999999998655444456788
Q ss_pred ceecccccc
Q 046888 856 KWLQAGNCK 864 (1170)
Q Consensus 856 ~~L~i~~c~ 864 (1170)
+.|++.+++
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 889888764
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=6.6e-24 Score=254.70 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=223.1
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceee-cCCCcCCCCCeeEEEecCCCCCCC-CCCC-
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQF-LDGLDYLPEKLRYLHLHKYPLRTL-PSNF- 610 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~- 610 (1170)
.++++....-.+....|.++++|++|+++++.. ...+ +..+..++ +|++|++++|.+..+ |..+
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~------------~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP------------GLVIRNNTFRGLS-SLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCST------------TCEECTTTTTTCT-TCCEEECTTCTTCEECTTTTT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcc------------cceECcccccccc-cCCEEeCCCCccCccChhhcc
Confidence 455555555556667899999999999987642 2223 23444454 899999999999876 5556
Q ss_pred CCCcCccccCCCCCccc-cccc--ccccccceeecCCCCCCCccCCC--CCCCCccccccccCCcc--------------
Q 046888 611 KPKNLIELNLPFSKVVQ-IWEG--KKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNCTH-------------- 671 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~-------------- 671 (1170)
.+++|++|+|++|.+.. ++.. +..+++|++|+|++|.+....|. +..+++|++|+++++..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 78999999999999885 3444 78899999999999998777676 77889999988876432
Q ss_pred ----cccCCCcccccccc---------cccccccceeecccccccccccccccCC---CcccEEecCCCCCchh------
Q 046888 672 ----LNLCDTAIEEVPSS---------VECLTNLEYLYINRCKRLKRVSTSICKL---KSLIWLCLNECLNLES------ 729 (1170)
Q Consensus 672 ----L~l~~n~i~~lp~~---------i~~l~~L~~L~L~~~~~l~~lp~~i~~L---~~L~~L~l~~c~~l~~------ 729 (1170)
|++++|.+..++.. +..+++|+.|++++|...+..|..+..+ ++|+.|++++|.....
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 23344444443321 2244677777777777666666554433 6777777776632211
Q ss_pred -----------h-hccccEEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCC
Q 046888 730 -----------F-LESLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNC 796 (1170)
Q Consensus 730 -----------~-~~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~ 796 (1170)
+ +..|+.|++++|.+..+ |..+..+++|+.|+|++|.+.. +++..+.++++|+.|+|++|
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-------IDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSS
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-------cChhHhcCcccCCEEECCCC
Confidence 0 24688899999888854 5678888999999999988763 43334788889999999999
Q ss_pred CCCCC-CcccCCCCCCCEEECcCCCCccc-cccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccccccc
Q 046888 797 ALTAI-PEEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKR 865 (1170)
Q Consensus 797 ~l~~i-p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~ 865 (1170)
.++++ |..+..+++|+.|+|++|+++.+ |..+..+++|++|+|++|+.....+.. .++|+.|++.+++-
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 88875 56778889999999999988866 677888899999999988754433322 36777888777653
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=261.82 Aligned_cols=333 Identities=19% Similarity=0.182 Sum_probs=234.7
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCC
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPK 613 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~ 613 (1170)
.++++......+....|.++++|++|+++++.. ....+..+..++ +|++|++++|.++.+|.. .++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~ 90 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRI------------QYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTV 90 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC------------CEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCcc------------CCcChHHhhccc-CCCEEecCCCceeecCcc-ccC
Confidence 345555544455567788888888888877652 222344455554 788888888888888877 788
Q ss_pred cCccccCCCCCccc--ccccccccccceeecCCCCCCCccCCCCCCCCcc--ccccccCCcc------------------
Q 046888 614 NLIELNLPFSKVVQ--IWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNL--ERINLWNCTH------------------ 671 (1170)
Q Consensus 614 ~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L--~~L~L~~c~~------------------ 671 (1170)
+|++|+|++|.+.. +|..+..+++|++|+|++|.+.. ..+..+++| +.|+++++..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 88888888888875 45778888888888888887543 223444444 5555544322
Q ss_pred --------------------------cccCCCc-------cccccccccc---------------------------ccc
Q 046888 672 --------------------------LNLCDTA-------IEEVPSSVEC---------------------------LTN 691 (1170)
Q Consensus 672 --------------------------L~l~~n~-------i~~lp~~i~~---------------------------l~~ 691 (1170)
|++++|. +....+.++. +++
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 1111111 0000001111 236
Q ss_pred cceeecccccccccccccc-----cCCCcccEEecCCCCCchhhh----------ccccEEEccCcCCcccCccccCCCC
Q 046888 692 LEYLYINRCKRLKRVSTSI-----CKLKSLIWLCLNECLNLESFL----------ESLKKINLGRTTVTELPSSFENIEG 756 (1170)
Q Consensus 692 L~~L~L~~~~~l~~lp~~i-----~~L~~L~~L~l~~c~~l~~~~----------~~L~~L~L~~~~i~~lp~~l~~l~~ 756 (1170)
|++|++++|...+.+|..+ +++++|+.++++++.. .+| ..|+.|++++|.+..++. ...+++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~ 325 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISP 325 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCc
Confidence 7777777777666888877 8888999998887754 444 349999999998876642 268899
Q ss_pred CCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC---CCcccCCCCCCCEEECcCCCCcc-cccc-ccCC
Q 046888 757 LGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA---IPEEIGCLPSLEWLELRENNFES-LPVS-IKQL 831 (1170)
Q Consensus 757 L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~---ip~~l~~l~~L~~L~L~~n~l~~-lp~~-l~~l 831 (1170)
|++|++++|.+.+ .+|.. +..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++. +|.. +..+
T Consensus 326 L~~L~Ls~n~l~~------~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 326 FLHLDFSNNLLTD------TVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCEEECCSSCCCT------TTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred ccEEEeECCccCh------hhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 9999999999875 34444 7889999999999999996 45778999999999999999997 8865 7889
Q ss_pred CCCCEEEecCCCCCCCCCC-CccccceeccccccccCCCCCCCCCchhhhhhhhhccccccCCCccccc
Q 046888 832 SRLKRLDLSNCSMLQSIPE-LPPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYDDEVEDV 899 (1170)
Q Consensus 832 ~~L~~L~L~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~l~~~~ 899 (1170)
++|+.|+|++|...+.+|. ++++|+.|++++| .++.+ |.... .+..|+.|++.+|. +...+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~i---p~~~~--~l~~L~~L~L~~N~-l~~l~ 460 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSI---PKQVV--KLEALQELNVASNQ-LKSVP 460 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCC---CGGGG--GCTTCCEEECCSSC-CCCCC
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCC-ccccc---chhhh--cCCCCCEEECCCCc-CCccC
Confidence 9999999999998777665 4479999999988 44444 33332 45568888888873 43443
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=7.9e-24 Score=255.64 Aligned_cols=284 Identities=21% Similarity=0.284 Sum_probs=230.1
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-C
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-K 611 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~ 611 (1170)
.++++....-.+....|.++++|+.|+++++. .....+..+..++ +|++|++++|.++.+|.. | .
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENI------------VSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSC------------CCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTT
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCc------------cCEeChhhhhCCc-cCCEEECCCCcCCccCcccccC
Confidence 45566555555667789999999999998764 2233345565665 899999999999999875 3 7
Q ss_pred CCcCccccCCCCCcccc-cccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCccccccc-cccc
Q 046888 612 PKNLIELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPS-SVEC 688 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~-~i~~ 688 (1170)
+++|++|+|++|.+..+ +..+..+++|+.|+|++|.+....|. +..+++|+.|+|+++ .+..+|. .+.+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~l~~ 174 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--------NLTSIPTEALSH 174 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--------CCSSCCHHHHTT
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--------cCcccChhHhcc
Confidence 89999999999999876 45688999999999999987766664 788888888888774 4466665 4789
Q ss_pred ccccceeecccccccccccccccCCCcccEEecCCCCCchhhhc------cccEEEccCcCCcccCc-cccCCCCCCEEE
Q 046888 689 LTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLE------SLKKINLGRTTVTELPS-SFENIEGLGTLG 761 (1170)
Q Consensus 689 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~------~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~ 761 (1170)
+++|+.|++++|......+..+..+++|+.|++++|..+..+|. +|+.|++++|.++.+|. .+..+++|+.|+
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 99999999999987776677888999999999999877766544 58999999999998884 678899999999
Q ss_pred ccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccccc-cccCCCCCCEEEe
Q 046888 762 LERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLPV-SIKQLSRLKRLDL 839 (1170)
Q Consensus 762 L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 839 (1170)
|++|.+. .++...+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|
T Consensus 255 Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 255 LSYNPIS-------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CCSSCCC-------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred CCCCcCC-------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 9999876 34555578889999999999999885 6788889999999999999998875 4678899999999
Q ss_pred cCCCCC
Q 046888 840 SNCSML 845 (1170)
Q Consensus 840 ~~c~~l 845 (1170)
++|+..
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 999853
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.5e-23 Score=259.27 Aligned_cols=194 Identities=20% Similarity=0.189 Sum_probs=146.3
Q ss_pred ccccccceeeccccccccc--ccccccCCCcccEEecCCCCCchhh------hccccEEEccCcCCcccCc--cccCCCC
Q 046888 687 ECLTNLEYLYINRCKRLKR--VSTSICKLKSLIWLCLNECLNLESF------LESLKKINLGRTTVTELPS--SFENIEG 756 (1170)
Q Consensus 687 ~~l~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~~------~~~L~~L~L~~~~i~~lp~--~l~~l~~ 756 (1170)
+.+++|++|++++|...+. +|..+..+++|+.|++++|. +..+ .+.|+.|++++|.+..++. .+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 3456666666666654433 36778899999999999985 3333 3459999999999987654 7889999
Q ss_pred CCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC--CCcccCCCCCCCEEECcCCCCccc-cccccCCCC
Q 046888 757 LGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA--IPEEIGCLPSLEWLELRENNFESL-PVSIKQLSR 833 (1170)
Q Consensus 757 L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~--ip~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~ 833 (1170)
|+.|++++|.+.. ..|. .+.++++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++.+ |..+..+++
T Consensus 426 L~~L~l~~n~l~~------~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 426 LLYLDISYTNTKI------DFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp CCEEECTTSCCEE------CCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCEEECcCCCCCc------cchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 9999999998764 2333 38889999999999999886 688899999999999999999865 567889999
Q ss_pred CCEEEecCCCCCCCCCCCc---cccceeccccccccCCCCCCCCCchhhhhh-hhhccccccCCC
Q 046888 834 LKRLDLSNCSMLQSIPELP---PSLKWLQAGNCKRLQSLPEIPSRPEEIDAS-LLQKLSKYSYDD 894 (1170)
Q Consensus 834 L~~L~L~~c~~l~~lp~l~---~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~-~L~~L~~~~c~~ 894 (1170)
|+.|+|++|+.....|... ++|+.|++++|. ++.+|. ... ..+ .|+.|.+.++|-
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~---~~~--~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG---ILQ--HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES---CGG--GSCTTCCEEECCSCCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH---hHh--hhcccCcEEEccCCCc
Confidence 9999999998766656533 678889998875 555443 221 122 377777777644
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=5.2e-24 Score=262.09 Aligned_cols=310 Identities=21% Similarity=0.235 Sum_probs=210.1
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-C
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-K 611 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~ 611 (1170)
.++++....-.+....|.++++|++|+++++.. ....+..+..++ +|++|++++|.+..+|.. + .
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRI------------NTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCC------------CEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTT
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCc------------CccChhhccccc-cCCEEECCCCccCccCHHHhcc
Confidence 345555444445566788999999999987652 222334455554 899999999998888765 4 7
Q ss_pred CCcCccccCCCCCccc--ccccccccccceeecCCCCCCCccCC--CCCCCCccccccccCCc----------------c
Q 046888 612 PKNLIELNLPFSKVVQ--IWEGKKKAFKLKSINLSHSQYLIRIP--DPSEAPNLERINLWNCT----------------H 671 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~----------------~ 671 (1170)
+++|++|++++|.+.. .|..+..+++|++|+|++|.....+| .+.++++|++|+++++. .
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 8899999999998884 45678888999999999988666665 37888888888877532 2
Q ss_pred cccCCCccccccccc-ccccccceeecccccccccc--c-----------------------------ccccCCCcccEE
Q 046888 672 LNLCDTAIEEVPSSV-ECLTNLEYLYINRCKRLKRV--S-----------------------------TSICKLKSLIWL 719 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i-~~l~~L~~L~L~~~~~l~~l--p-----------------------------~~i~~L~~L~~L 719 (1170)
|+++.|.+..+|..+ +.+++|++|++++|...+.. | ..+..+++|+.|
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 234445555555443 45677777777777644320 1 011222333333
Q ss_pred ecCCCCCc-----------------------------------------hhhhccccEEEccCcCCcccCccc-cCCCCC
Q 046888 720 CLNECLNL-----------------------------------------ESFLESLKKINLGRTTVTELPSSF-ENIEGL 757 (1170)
Q Consensus 720 ~l~~c~~l-----------------------------------------~~~~~~L~~L~L~~~~i~~lp~~l-~~l~~L 757 (1170)
++++|... ......|+.|++++|.++.+|..+ ..+++|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence 33333100 012245788888888888888776 478889
Q ss_pred CEEEccCCCCCCcCcCCcccC--ccccCCCCCCCEEeCCCCCCCCCC---cccCCCCCCCEEECcCCCCccccccccCCC
Q 046888 758 GTLGLERSQLPHLLSGLVSLP--ASLLSGLFSLNWLNLNNCALTAIP---EEIGCLPSLEWLELRENNFESLPVSIKQLS 832 (1170)
Q Consensus 758 ~~L~L~~~~~~~~~~~l~~lp--~~~l~~l~~L~~L~L~~~~l~~ip---~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~ 832 (1170)
+.|++++|.+.+. +| ...+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+++.+|..+..++
T Consensus 337 ~~L~Ls~N~l~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 337 EFLDLSENLMVEE------YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp CEEECCSSCCCHH------HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred cEEEccCCccccc------cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 9999998887642 21 112567788888888888888765 347778888888888888888888888888
Q ss_pred CCCEEEecCCCCCCCCCC-Cccccceeccccc
Q 046888 833 RLKRLDLSNCSMLQSIPE-LPPSLKWLQAGNC 863 (1170)
Q Consensus 833 ~L~~L~L~~c~~l~~lp~-l~~~L~~L~i~~c 863 (1170)
+|++|+|++|.. +.+|. +|++|+.|++++|
T Consensus 411 ~L~~L~Ls~N~l-~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 411 KMRFLNLSSTGI-RVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp TCCEEECTTSCC-SCCCTTSCTTCSEEECCSS
T ss_pred cccEEECCCCCc-ccccchhcCCceEEECCCC
Confidence 888888888874 34443 4567777777776
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.4e-23 Score=240.38 Aligned_cols=248 Identities=22% Similarity=0.305 Sum_probs=117.7
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
+|++|++++|.++.+|....+++|++|++++|.+..++ .+..+++|++|+|++|.+. .++.+..+++|+.|++++|..
T Consensus 67 ~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~ 144 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHN 144 (347)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTT
T ss_pred CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCC
Confidence 55555555555555544224555555555555555543 3455555555555555432 223345555555555555433
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhh-----hccccEEEccCcCCcc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF-----LESLKKINLGRTTVTE 746 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~-----~~~L~~L~L~~~~i~~ 746 (1170)
+ ..++. +..+++|++|++++|.... ++. +..+++|+.|++++|.. ..+ ...|+.|++++|.+..
T Consensus 145 ~-------~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 145 L-------SDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQI-EDISPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp C-------CCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred c-------ccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcc-cccccccCCCccceeecccCCCCC
Confidence 3 22222 4455555555555544222 222 44555555555554421 111 2235555555555554
Q ss_pred cCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccc
Q 046888 747 LPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV 826 (1170)
Q Consensus 747 lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~ 826 (1170)
++. +..+++|+.|++++|.+.. ++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+|
T Consensus 214 ~~~-~~~~~~L~~L~l~~n~l~~-------~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~- 281 (347)
T 4fmz_A 214 ITP-VANMTRLNSLKIGNNKITD-------LSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS- 281 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCC-------CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred Cch-hhcCCcCCEEEccCCccCC-------Ccc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-
Confidence 433 4455555555555555432 222 444555555555555555442 3445555555555555555543
Q ss_pred cccCCCCCCEEEecCCCCCCCCCC---Cccccceecccccc
Q 046888 827 SIKQLSRLKRLDLSNCSMLQSIPE---LPPSLKWLQAGNCK 864 (1170)
Q Consensus 827 ~l~~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~i~~c~ 864 (1170)
.+..+++|+.|+|++|+.....|. -.++|+.|++.+|+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 344555555555555543333222 12345555555543
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.4e-23 Score=238.10 Aligned_cols=278 Identities=21% Similarity=0.235 Sum_probs=228.2
Q ss_pred hhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccc
Q 046888 549 AFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQI 628 (1170)
Q Consensus 549 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l 628 (1170)
.|..+++|+.|+++++... .++ .+..+ ++|++|++++|.++.+|....+++|++|++++|.+..+
T Consensus 61 ~~~~~~~L~~L~l~~n~i~-------------~~~-~~~~l-~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQIT-------------DIS-PLSNL-VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp TGGGCTTCCEEECCSSCCC-------------CCG-GGTTC-TTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC
T ss_pred hhhhcCCccEEEccCCccc-------------cch-hhhcC-CcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc
Confidence 4788999999999876531 111 14444 48999999999999998655899999999999999988
Q ss_pred cccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccc
Q 046888 629 WEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST 708 (1170)
Q Consensus 629 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 708 (1170)
+. +..+++|++|++++|.....++.+..+++|+.|++++|. +..++. +..+++|+.|++++|... .++.
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~--------~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~ 194 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--------VKDVTP-IANLTDLYSLSLNYNQIE-DISP 194 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC--------CCCCGG-GGGCTTCSEEECTTSCCC-CCGG
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC--------cCCchh-hccCCCCCEEEccCCccc-cccc
Confidence 77 889999999999999888888889999999999888753 355555 889999999999998744 4554
Q ss_pred cccCCCcccEEecCCCCCch----hhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCC
Q 046888 709 SICKLKSLIWLCLNECLNLE----SFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSG 784 (1170)
Q Consensus 709 ~i~~L~~L~~L~l~~c~~l~----~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~ 784 (1170)
+..+++|+.|++++|.... ..++.|+.|++++|.++.++. +..+++|+.|++++|.+.. ++. +..
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~--~~~ 263 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-------INA--VKD 263 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------CGG--GTT
T ss_pred -ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-------Chh--Hhc
Confidence 7899999999999874322 124569999999999998877 8999999999999998764 322 788
Q ss_pred CCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccc-cccccCCCCCCEEEecCCCCCCCCC-CCccccceecccc
Q 046888 785 LFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESL-PVSIKQLSRLKRLDLSNCSMLQSIP-ELPPSLKWLQAGN 862 (1170)
Q Consensus 785 l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp-~l~~~L~~L~i~~ 862 (1170)
+++|+.|++++|.+++++ .+..+++|+.|+|++|.++.. |..+..+++|+.|+|++|+.....| ...++|+.|++.+
T Consensus 264 l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSC
T ss_pred CCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhh
Confidence 999999999999999985 588899999999999999854 5778999999999999999655444 2236777887777
Q ss_pred cc
Q 046888 863 CK 864 (1170)
Q Consensus 863 c~ 864 (1170)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=5.3e-23 Score=253.64 Aligned_cols=331 Identities=21% Similarity=0.196 Sum_probs=227.9
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCC
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPK 613 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~ 613 (1170)
.++++......+....|.++++|++|+++++. .....++.+..++ +|++|++++|.++.+|.. .++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------------l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~ 121 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNR------------IRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMA 121 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------------CCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCT
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCC------------CCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-ccc
Confidence 45566555556667789999999999998775 2223344555554 899999999999999988 899
Q ss_pred cCccccCCCCCccccc--ccccccccceeecCCCCCCCccCCCCCCCCcc--ccccccCCcc--c---------------
Q 046888 614 NLIELNLPFSKVVQIW--EGKKKAFKLKSINLSHSQYLIRIPDPSEAPNL--ERINLWNCTH--L--------------- 672 (1170)
Q Consensus 614 ~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L--~~L~L~~c~~--L--------------- 672 (1170)
+|++|++++|.+..++ ..+..+++|++|+|++|.+.. ..+..+++| +.|+++++.. -
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 9999999999999765 688999999999999998654 234445555 7777766432 0
Q ss_pred --ccCCCcccc-ccc-cccc-------------------------------------------------------ccccc
Q 046888 673 --NLCDTAIEE-VPS-SVEC-------------------------------------------------------LTNLE 693 (1170)
Q Consensus 673 --~l~~n~i~~-lp~-~i~~-------------------------------------------------------l~~L~ 693 (1170)
+++.|.+.. ++. .+.. .++|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 111111110 000 0011 12677
Q ss_pred eeecccccccccccccc-----cCCCc--------------------------ccEEecCCCCCch----hhhccccEEE
Q 046888 694 YLYINRCKRLKRVSTSI-----CKLKS--------------------------LIWLCLNECLNLE----SFLESLKKIN 738 (1170)
Q Consensus 694 ~L~L~~~~~l~~lp~~i-----~~L~~--------------------------L~~L~l~~c~~l~----~~~~~L~~L~ 738 (1170)
+|++++|...+.+|..+ .++++ |+.|++++|.... ..++.|+.|+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 359 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEE
Confidence 77777777666777655 34443 4444444443211 2245699999
Q ss_pred ccCcCCcc-cCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcc-cCCCCCCCEEE
Q 046888 739 LGRTTVTE-LPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEE-IGCLPSLEWLE 815 (1170)
Q Consensus 739 L~~~~i~~-lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~-l~~l~~L~~L~ 815 (1170)
+++|.++. +|..+.++++|+.|+|++|.+.... .+|.. +.++++|+.|+|++|.++. +|.. +..+++|+.|+
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----KVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT----HHHHT-TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcc----cchhh-hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 99999986 6888999999999999999886421 22232 7889999999999999987 7764 77889999999
Q ss_pred CcCCCCc-cccccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccccccccCCCCCCCCCchhhhhhhhhcccccc
Q 046888 816 LRENNFE-SLPVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYS 891 (1170)
Q Consensus 816 L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~ 891 (1170)
|++|+++ .+|..+. ++|+.|+|++|. ++.+|.. .++|+.|++.++ .++.+|.. .. ..+..|+.|.+.+
T Consensus 435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~--~~--~~l~~L~~L~l~~ 506 (562)
T 3a79_B 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDG--VF--DRLTSLQYIWLHD 506 (562)
T ss_dssp CCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTT--ST--TTCTTCCCEECCS
T ss_pred CCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHH--HH--hcCCCCCEEEecC
Confidence 9999986 4454433 689999999996 4567652 367888888876 35555432 01 1234567777776
Q ss_pred CC
Q 046888 892 YD 893 (1170)
Q Consensus 892 c~ 893 (1170)
.+
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=261.95 Aligned_cols=301 Identities=22% Similarity=0.258 Sum_probs=219.2
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceee-cCCCcCCCCCeeEEEecCCCCCCC-CCCC-
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQF-LDGLDYLPEKLRYLHLHKYPLRTL-PSNF- 610 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~- 610 (1170)
.+|++....-.+....|.++++|++|+++++.. ...+ +..+..++ +|++|++++|.+..+ |..|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~------------~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT------------PLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC------------CCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC------------ccccCHHHhcCCC-CCCEEECCCCcCcccCHhHcc
Confidence 456666555556677899999999999987641 2233 45566665 899999999999977 6666
Q ss_pred CCCcCccccCCCCCccc-cccc--ccccccceeecCCCCCCCccCCC--CCCCCccccccccCCcccccCCCcccccccc
Q 046888 611 KPKNLIELNLPFSKVVQ-IWEG--KKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNCTHLNLCDTAIEEVPSS 685 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~ 685 (1170)
.+.+|++|+|++|.+.. +|.. +..+++|++|+|++|.+....+. ++++++|++|+|+++..- ...|..
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-------~~~~~~ 167 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-------LVCEHE 167 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-------CCCSGG
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-------eeCHHH
Confidence 89999999999999985 4554 88999999999999998766543 789999999988774321 123344
Q ss_pred cccc--cccceeecccccccccccccccCCCc------ccEEecCCCCCc------------------------------
Q 046888 686 VECL--TNLEYLYINRCKRLKRVSTSICKLKS------LIWLCLNECLNL------------------------------ 727 (1170)
Q Consensus 686 i~~l--~~L~~L~L~~~~~l~~lp~~i~~L~~------L~~L~l~~c~~l------------------------------ 727 (1170)
++.+ ++|+.|++++|...+..|..++.+.+ |+.|++++|...
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 5544 56666666666655555555444443 666666655210
Q ss_pred -----h--------hh-hccccEEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEe
Q 046888 728 -----E--------SF-LESLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLN 792 (1170)
Q Consensus 728 -----~--------~~-~~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~ 792 (1170)
. .+ +.+|+.|++++|.+..+ |..+..+++|+.|+|++|.+.. +++..+.++++|+.|+
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-------IADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-------ECTTTTTTCSSCCEEE
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-------CChHHhcCCCCCCEEE
Confidence 0 00 24688899999888865 4568889999999999998763 3334478888999999
Q ss_pred CCCCCCCCC-CcccCCCCCCCEEECcCCCCccccc-cccCCCCCCEEEecCCCCCCCCCCCccccceeccccc
Q 046888 793 LNNCALTAI-PEEIGCLPSLEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQSIPELPPSLKWLQAGNC 863 (1170)
Q Consensus 793 L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~i~~c 863 (1170)
|++|.++.+ |..+..+++|+.|+|++|++..++. .+..+++|+.|+|++|. ++.++. +++|+.|.+.++
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~L~~L~l~~N 391 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF-IPSIPDIFLSGN 391 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-CCSCSEEEEESC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC-CCCcchhccCCC
Confidence 999988875 6778888999999999998887754 57788899999998887 344554 456777777665
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=7.6e-23 Score=252.86 Aligned_cols=124 Identities=29% Similarity=0.379 Sum_probs=71.5
Q ss_pred ccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCCC
Q 046888 734 LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSLE 812 (1170)
Q Consensus 734 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L~ 812 (1170)
|+.|++++|.+..+|..+..+++|+.|++++|.+.. ..+...+.++++|+.|+|++|.+.. .|..+..+++|+
T Consensus 375 L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES------CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cCEEECCCCccccccccccccCCCCEEEccCCcccc------ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 455555555555444445555555555555554432 1122235566667777777776665 455566667777
Q ss_pred EEECcCCCCc--cccccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccccc
Q 046888 813 WLELRENNFE--SLPVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNC 863 (1170)
Q Consensus 813 ~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c 863 (1170)
.|+|++|.++ .+|..+..+++|+.|+|++|......|.. .++|+.|++.+|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 7777777665 46666666777777777777655444432 245666666665
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.3e-23 Score=246.17 Aligned_cols=297 Identities=23% Similarity=0.266 Sum_probs=196.3
Q ss_pred hhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccc
Q 046888 549 AFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQI 628 (1170)
Q Consensus 549 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l 628 (1170)
.+..+++|+.|+++++... .++. +..+ ++|++|++++|.+..++....+++|++|++++|.+..+
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~-------------~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLT-------------DITP-LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp TGGGCTTCCEEECCSSCCC-------------CCGG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred chhhhcCCCEEECCCCccC-------------Cchh-hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC
Confidence 3678889999998776421 1111 3444 38999999999988887744888999999999988888
Q ss_pred cccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccc
Q 046888 629 WEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST 708 (1170)
Q Consensus 629 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 708 (1170)
+. +..+++|++|+|++|.+. .++.+..+++|+.|++.+ .+..++. ++++++|+.|++++|.. ..++
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~---------~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~- 193 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGN---------QVTDLKP-LANLTTLERLDISSNKV-SDIS- 193 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEE---------SCCCCGG-GTTCTTCCEEECCSSCC-CCCG-
T ss_pred hH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCC---------cccCchh-hccCCCCCEEECcCCcC-CCCh-
Confidence 65 788899999999988744 456678888888887753 1133333 66777777777777653 3333
Q ss_pred cccCCCcccEEecCCCCCchh----hhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCC
Q 046888 709 SICKLKSLIWLCLNECLNLES----FLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSG 784 (1170)
Q Consensus 709 ~i~~L~~L~~L~l~~c~~l~~----~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~ 784 (1170)
.+..+++|+.|++++|..... .++.|+.|++++|.++.++ .+..+++|+.|++++|.+.. ++. +..
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-------~~~--~~~ 263 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-------LAP--LSG 263 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-------CGG--GTT
T ss_pred hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc-------chh--hhc
Confidence 366777777777777642211 1345777777777777663 46677777777777777653 222 566
Q ss_pred CCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCC-CCccccceeccccc
Q 046888 785 LFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIP-ELPPSLKWLQAGNC 863 (1170)
Q Consensus 785 l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~~L~~L~i~~c 863 (1170)
+++|+.|++++|.++.++. +..+++|+.|+|++|+++.++. +..+++|+.|+|++|+.....| ...++|+.|++.+|
T Consensus 264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 7777777777777777655 6677777777777777776664 6677777777777776443332 12356777777666
Q ss_pred cccCCCCCCCCCchhhhhhhhhccccccCC
Q 046888 864 KRLQSLPEIPSRPEEIDASLLQKLSKYSYD 893 (1170)
Q Consensus 864 ~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~ 893 (1170)
.+..++. ...+..|+.|.+.+|.
T Consensus 342 -~l~~~~~------l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 342 -KVSDVSS------LANLTNINWLSAGHNQ 364 (466)
T ss_dssp -CCCCCGG------GTTCTTCCEEECCSSC
T ss_pred -ccCCchh------hccCCCCCEEeCCCCc
Confidence 3333321 1123346666666664
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=255.70 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=87.4
Q ss_pred cccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhh--------------------------ccccEE
Q 046888 684 SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFL--------------------------ESLKKI 737 (1170)
Q Consensus 684 ~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~--------------------------~~L~~L 737 (1170)
..+..+++|+.|++++|.. ..+|..+..+ +|+.|++++|... .+| +.|+.|
T Consensus 276 ~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L 352 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352 (570)
T ss_dssp TTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred hhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEE
Confidence 3345566666666666643 3466555555 6666666555311 221 224444
Q ss_pred EccCcCCccc---CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC--cccCCCCCCC
Q 046888 738 NLGRTTVTEL---PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP--EEIGCLPSLE 812 (1170)
Q Consensus 738 ~L~~~~i~~l---p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip--~~l~~l~~L~ 812 (1170)
++++|.++.+ |..+..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+...+ ..+..+++|+
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-------EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred eCcCCccCccccccccccccCccCEEECCCCccc-------ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 4444444322 233444444444444444432 23333 555666666666666655532 2455666666
Q ss_pred EEECcCCCCcc-ccccccCCCCCCEEEecCCCCC-CCCCCC---ccccceeccccc
Q 046888 813 WLELRENNFES-LPVSIKQLSRLKRLDLSNCSML-QSIPEL---PPSLKWLQAGNC 863 (1170)
Q Consensus 813 ~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~c~~l-~~lp~l---~~~L~~L~i~~c 863 (1170)
.|+|++|.+.. .|..+..+++|+.|+|++|... ..+|.. .++|+.|++.+|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 66666666653 3445566666666666666543 234432 245666666655
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.7e-22 Score=248.65 Aligned_cols=327 Identities=22% Similarity=0.273 Sum_probs=227.4
Q ss_pred cccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCC--CCCC-C
Q 046888 535 LNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTL--PSNF-K 611 (1170)
Q Consensus 535 l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~-~ 611 (1170)
++++..+...+.+.+|.++++|++|+++++.... ..+..+..+ ++|++|++++|.++.+ |..+ .
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS------------LSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS------------CCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTT
T ss_pred EECCCCCcCccChhhccccccCCEEECCCCccCc------------cCHHHhccC-CCCcEEECCCCcccccchhhhhhc
Confidence 3333333334445678899999999998765311 111123333 3788999998888854 4555 7
Q ss_pred CCcCccccCCCCC-ccccc-ccccccccceeecCCCCCCCccCCC-CCCCCcccccccc----------------CCccc
Q 046888 612 PKNLIELNLPFSK-VVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW----------------NCTHL 672 (1170)
Q Consensus 612 ~~~L~~L~L~~~~-i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~----------------~c~~L 672 (1170)
+++|++|++++|. +..+| ..+..+++|++|+|++|.+....|. +..+++|++|++. .++.|
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEE
Confidence 8888888888887 66676 4678888888888888887776665 6777777777643 33444
Q ss_pred ccCCCcccccc---cc-----------------------------cccc-------------------------------
Q 046888 673 NLCDTAIEEVP---SS-----------------------------VECL------------------------------- 689 (1170)
Q Consensus 673 ~l~~n~i~~lp---~~-----------------------------i~~l------------------------------- 689 (1170)
++++|.+..++ .. +..+
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 55555554431 00 0111
Q ss_pred ----------------------------cccceeecccccccccccccc-cCCCcccEEecCCCCCchhhh---------
Q 046888 690 ----------------------------TNLEYLYINRCKRLKRVSTSI-CKLKSLIWLCLNECLNLESFL--------- 731 (1170)
Q Consensus 690 ----------------------------~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~c~~l~~~~--------- 731 (1170)
.+|+.|++++|. +..+|..+ .++++|+.|++++|......|
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 234445555443 33466555 468999999999987654432
Q ss_pred ccccEEEccCcCCcccC---ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCC
Q 046888 732 ESLKKINLGRTTVTELP---SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCL 808 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~~lp---~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l 808 (1170)
+.|+.|++++|.++.+| ..+..+++|+.|++++|.+. .+|.. +..+++|+.|+|++|.++.+|..+ .
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~--~ 430 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------PMPDS-CQWPEKMRFLNLSSTGIRVVKTCI--P 430 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-------CCCSC-CCCCTTCCEEECTTSCCSCCCTTS--C
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-------cCChh-hcccccccEEECCCCCcccccchh--c
Confidence 45999999999999876 35889999999999999876 45655 778899999999999999887655 3
Q ss_pred CCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCC--ccccceeccccccccCCCCCCCCCchhhhhhhhhc
Q 046888 809 PSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPEL--PPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQK 886 (1170)
Q Consensus 809 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~ 886 (1170)
++|+.|+|++|+++.++ ..+++|+.|+|++|+. +.+|.. .++|+.|+++++ .++.++. ... ..+..|+.
T Consensus 431 ~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l-~~ip~~~~l~~L~~L~Ls~N-~l~~~~~--~~~--~~l~~L~~ 501 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKL-KTLPDASLFPVLLVMKISRN-QLKSVPD--GIF--DRLTSLQK 501 (549)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SSCCCGGGCTTCCEEECCSS-CCCCCCT--TGG--GGCTTCCE
T ss_pred CCceEEECCCCChhhhc---ccCChhcEEECCCCcc-CcCCCcccCccCCEEecCCC-ccCCcCH--HHH--hcCcccCE
Confidence 68999999999998775 5789999999999974 577763 478999999887 4444322 111 23445778
Q ss_pred cccccCCC
Q 046888 887 LSKYSYDD 894 (1170)
Q Consensus 887 L~~~~c~~ 894 (1170)
|++.+++-
T Consensus 502 L~l~~N~~ 509 (549)
T 2z81_A 502 IWLHTNPW 509 (549)
T ss_dssp EECCSSCB
T ss_pred EEecCCCc
Confidence 88887753
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-22 Score=236.92 Aligned_cols=297 Identities=15% Similarity=0.167 Sum_probs=231.4
Q ss_pred CCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCccccc
Q 046888 552 NMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIW 629 (1170)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~ 629 (1170)
.+++|+.|++.++. ...++..+..-.++|++|++++|.+..+|. .+ .+++|++|+|++|.+..++
T Consensus 43 ~l~~l~~l~l~~~~-------------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-------------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCE-------------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCc-------------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 46789999997653 123344332222489999999999998865 45 8999999999999999886
Q ss_pred c-cccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccc-cccccccccceeecccccccccc
Q 046888 630 E-GKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRV 706 (1170)
Q Consensus 630 ~-~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l 706 (1170)
. .+..+++|++|+|++|.+....+. +..+++|++|+++++ .+..++ ..++.+++|++|++++|.... +
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 180 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN--------NLERIEDDTFQATTSLQNLQLSSNRLTH-V 180 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------CCCBCCTTTTSSCTTCCEEECCSSCCSB-C
T ss_pred HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC--------ccCccChhhccCCCCCCEEECCCCcCCc-c
Confidence 4 478999999999999986644444 588999999888774 445664 458999999999999987544 3
Q ss_pred cccccCCCcccEEecCCCCCch-hhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCC
Q 046888 707 STSICKLKSLIWLCLNECLNLE-SFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGL 785 (1170)
Q Consensus 707 p~~i~~L~~L~~L~l~~c~~l~-~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l 785 (1170)
+ ++.+++|+.|+++++..-. ..|..|+.|++++|.+..+|... .++|+.|++++|.+.. .+ .+..+
T Consensus 181 ~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~-------~~--~l~~l 247 (390)
T 3o6n_A 181 D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD-------TA--WLLNY 247 (390)
T ss_dssp C--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCC-------CG--GGGGC
T ss_pred c--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcc-------cH--HHcCC
Confidence 3 5678999999999874222 34677999999999999887644 5899999999999864 22 27889
Q ss_pred CCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccc
Q 046888 786 FSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAG 861 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~ 861 (1170)
++|+.|+|++|.++++ |..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+. ..+|.. .++|+.|++.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECC
Confidence 9999999999999985 7889999999999999999999998888999999999999974 455542 2789999998
Q ss_pred cccccCCCCCCCCCchhhhhhhhhccccccC
Q 046888 862 NCKRLQSLPEIPSRPEEIDASLLQKLSKYSY 892 (1170)
Q Consensus 862 ~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c 892 (1170)
+|. ++.++. ..+..|+.|.+.++
T Consensus 327 ~N~-i~~~~~-------~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 327 HNS-IVTLKL-------STHHTLKNLTLSHN 349 (390)
T ss_dssp SSC-CCCCCC-------CTTCCCSEEECCSS
T ss_pred CCc-cceeCc-------hhhccCCEEEcCCC
Confidence 875 444421 11234556665554
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.6e-22 Score=252.28 Aligned_cols=290 Identities=22% Similarity=0.260 Sum_probs=191.6
Q ss_pred CeeEEEecCCCCCCCC-CCC-CCCcCccccCCCCCcc------cccc----cccccccceeecCCCCCCCccCCC-CCCC
Q 046888 592 KLRYLHLHKYPLRTLP-SNF-KPKNLIELNLPFSKVV------QIWE----GKKKAFKLKSINLSHSQYLIRIPD-PSEA 658 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~------~l~~----~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l 658 (1170)
+|++|++++|.+..++ ..+ .+.+|++|++++|... .+|. .+..+++|++|+|++|.+....|. +..+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 4555555555444332 222 4445555555443221 2221 334444555555555544433333 4444
Q ss_pred CccccccccC--------------------CcccccCCCccccc-ccccccccccceeeccccccccccc-ccccCCCcc
Q 046888 659 PNLERINLWN--------------------CTHLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVS-TSICKLKSL 716 (1170)
Q Consensus 659 ~~L~~L~L~~--------------------c~~L~l~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L 716 (1170)
++|++|++++ ++.|++++|.+..+ |..+..+++|+.|++++|...+.+| ..+.++++|
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 432 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc
Confidence 5555554433 23445566777766 4578899999999999998777776 578899999
Q ss_pred cEEecCCCCCch------hhhccccEEEccCcCCc---ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCC
Q 046888 717 IWLCLNECLNLE------SFLESLKKINLGRTTVT---ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFS 787 (1170)
Q Consensus 717 ~~L~l~~c~~l~------~~~~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~ 787 (1170)
+.|++++|.... ...+.|+.|++++|.+. .+|..+..+++|+.|+|++|.+. .+++..+.++++
T Consensus 433 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~~ 505 (680)
T 1ziw_A 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-------NINDDMLEGLEK 505 (680)
T ss_dssp CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTT
T ss_pred cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-------cCChhhhccccc
Confidence 999999885221 11456999999998875 56888999999999999999876 455555888999
Q ss_pred CCEEeCCCCCCCCCCc---------ccCCCCCCCEEECcCCCCccccc-cccCCCCCCEEEecCCCCCCCCCC-C---cc
Q 046888 788 LNWLNLNNCALTAIPE---------EIGCLPSLEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQSIPE-L---PP 853 (1170)
Q Consensus 788 L~~L~L~~~~l~~ip~---------~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~-l---~~ 853 (1170)
|+.|+|++|.++.++. .+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|... .+|. . .+
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~ 584 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQV 584 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCC
Confidence 9999999999886422 36888999999999999998885 4789999999999998754 5553 2 26
Q ss_pred ccceeccccccccCCCCCCCCCchhhhhhhhhccccccCC
Q 046888 854 SLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYD 893 (1170)
Q Consensus 854 ~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~ 893 (1170)
+|+.|++.++ .++.++. ..-...+..++.|.+.++|
T Consensus 585 ~L~~L~L~~N-~l~~~~~---~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 585 SLKSLNLQKN-LITSVEK---KVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TCCEEECTTS-CCCBCCH---HHHHHHHTTCSEEECTTCC
T ss_pred CCCEEECCCC-cCCccCh---hHhcccccccCEEEccCCC
Confidence 7888888887 3444321 1100124456677766653
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=5.1e-22 Score=238.24 Aligned_cols=305 Identities=19% Similarity=0.215 Sum_probs=216.1
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCC-CCC-CCC-CCCcCccccCCCCCcccc-c
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLR-TLP-SNF-KPKNLIELNLPFSKVVQI-W 629 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp-~~~-~~~~L~~L~L~~~~i~~l-~ 629 (1170)
++|+.|+++++. .....+..+..++ +|++|++++|.+. .+| ..| .+++|++|+|++|.+..+ |
T Consensus 30 ~~l~~L~Ls~n~------------i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNS------------IAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp TTCCEEECCSSC------------CCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CccCEEEecCCc------------cCcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 689999998765 2223345566665 8999999999886 554 445 789999999999999876 6
Q ss_pred ccccccccceeecCCCCCCCccCCC---CCCCCccccccccCCcccccCCCccccc-ccc-cccccccceeecccccccc
Q 046888 630 EGKKKAFKLKSINLSHSQYLIRIPD---PSEAPNLERINLWNCTHLNLCDTAIEEV-PSS-VECLTNLEYLYINRCKRLK 704 (1170)
Q Consensus 630 ~~~~~l~~L~~L~Ls~~~~l~~~p~---~~~l~~L~~L~L~~c~~L~l~~n~i~~l-p~~-i~~l~~L~~L~L~~~~~l~ 704 (1170)
..+..+++|++|+|++|.+....|. +..+++|++|+|+++ .+..+ |.. ++++++|++|++++|...+
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN--------NIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS--------BCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC--------ccCccCcccccCCCCcccEEeCCCCcccc
Confidence 7899999999999999997654432 778888888887764 44555 544 7899999999999998777
Q ss_pred cccccccCC--CcccEEecCCCCCchhh---------------hccccEEEccCcCCcc-cCccc---------------
Q 046888 705 RVSTSICKL--KSLIWLCLNECLNLESF---------------LESLKKINLGRTTVTE-LPSSF--------------- 751 (1170)
Q Consensus 705 ~lp~~i~~L--~~L~~L~l~~c~~l~~~---------------~~~L~~L~L~~~~i~~-lp~~l--------------- 751 (1170)
..|..+..+ .+|+.|++++|... .+ ..+|+.|++++|.++. .|..+
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred cChhhhhccccccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 777666655 45566666554321 11 1235566666555542 11111
Q ss_pred ----------------------c--CCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccC
Q 046888 752 ----------------------E--NIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIG 806 (1170)
Q Consensus 752 ----------------------~--~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~ 806 (1170)
. ..++|+.|++++|.+.. +++..+..+++|+.|+|++|.++++ |..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-------LLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccc-------cchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 1 12578888888887763 3333378889999999999999885 56888
Q ss_pred CCCCCCEEECcCCCCccc-cccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccccccccCCCCCCCCCchhhhhh
Q 046888 807 CLPSLEWLELRENNFESL-PVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKRLQSLPEIPSRPEEIDAS 882 (1170)
Q Consensus 807 ~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~ 882 (1170)
.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|......|.. .++|+.|++.++ .++.++... . ..+.
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~--~~l~ 395 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI--F--DRLT 395 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT--T--TTCT
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhH--h--ccCC
Confidence 899999999999999876 567888999999999999866555543 367888888876 344443211 1 1233
Q ss_pred hhhccccccC
Q 046888 883 LLQKLSKYSY 892 (1170)
Q Consensus 883 ~L~~L~~~~c 892 (1170)
.|+.|.+.++
T Consensus 396 ~L~~L~l~~N 405 (455)
T 3v47_A 396 SLQKIWLHTN 405 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEEccCC
Confidence 4666776665
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.9e-22 Score=238.14 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=206.4
Q ss_pred hhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccc
Q 046888 549 AFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQI 628 (1170)
Q Consensus 549 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l 628 (1170)
.+.++++|+.|+++++.. . .+ .++..++ +|++|++++|.++.+| ...+++|++|++++|.++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l-----------~--~~-~~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSI-----------T--DM-TGIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCC-----------C--CC-TTGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC
T ss_pred ChhHcCCCCEEEccCCCc-----------c--cC-hhhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee
Confidence 577899999999987642 1 11 2455554 8999999999999887 44788999999999999987
Q ss_pred cccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccc
Q 046888 629 WEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVST 708 (1170)
Q Consensus 629 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 708 (1170)
+ +..+++|++|+|++|.+.. +| ++.+++|++|++++ |.+..+| ++.+++|+.|++++|...+.+
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~--------N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCAR--------NTLTEID--VSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTT--------SCCSCCC--CTTCTTCCEEECTTCSCCCCC--
T ss_pred e--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCC--------Cccceec--cccCCcCCEEECCCCCccccc--
Confidence 5 8889999999999998654 44 77888888887776 4456664 788999999999999777776
Q ss_pred cccCCCcccEEecCCCCCchhh----hccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCC
Q 046888 709 SICKLKSLIWLCLNECLNLESF----LESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSG 784 (1170)
Q Consensus 709 ~i~~L~~L~~L~l~~c~~l~~~----~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~ 784 (1170)
.++.+++|+.|++++|. +..+ .+.|+.|++++|.++.++ +..+++|+.|++++|.+.+ +| +..
T Consensus 165 ~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-------ip---~~~ 231 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-------ID---VTP 231 (457)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-------CC---CTT
T ss_pred ccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-------cC---ccc
Confidence 37788999999998873 3223 245888888888888773 7788888888888888763 33 567
Q ss_pred CCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc---------ccccCCCCCCEEEecCCCCCCCCCCCcccc
Q 046888 785 LFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLP---------VSIKQLSRLKRLDLSNCSMLQSIPELPPSL 855 (1170)
Q Consensus 785 l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp---------~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L 855 (1170)
+++|+.|++++|.++++| ++.+++|+.|++++|+++.+. -.+..+++|+.|+|++|+.++.+|.-.++|
T Consensus 232 l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred cCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcc
Confidence 788888888888888776 455666666666655544321 014567888888888888888887766778
Q ss_pred ceeccccccccCCCC
Q 046888 856 KWLQAGNCKRLQSLP 870 (1170)
Q Consensus 856 ~~L~i~~c~~L~~l~ 870 (1170)
+.|++.+|++|+.+.
T Consensus 310 ~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 310 TELDLSQNPKLVYLY 324 (457)
T ss_dssp SCCCCTTCTTCCEEE
T ss_pred eEechhhcccCCEEE
Confidence 888888887776653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.6e-22 Score=240.17 Aligned_cols=237 Identities=20% Similarity=0.248 Sum_probs=121.8
Q ss_pred CeeEEEecCCCCCCC-CCCC-CCCcCccccCCCCCccccccc-ccccccceeecCCCCCCCccCCC-CCCCCcccccccc
Q 046888 592 KLRYLHLHKYPLRTL-PSNF-KPKNLIELNLPFSKVVQIWEG-KKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW 667 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 667 (1170)
+|++|++++|.+..+ |..| .+++|++|+|++|.+..+|.. +..+++|++|+|++|.+....|. +..+++|+.|+|+
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 566666666665554 3333 555666666666666655543 45556666666666655444443 4555555555554
Q ss_pred CCcccccCCCccccc-ccccccccccceeecccccccccccccccCCCcccEEecCCCCCchh------hhccccEEEcc
Q 046888 668 NCTHLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLES------FLESLKKINLG 740 (1170)
Q Consensus 668 ~c~~L~l~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~------~~~~L~~L~L~ 740 (1170)
++ .+..+ |..+..+++|+.|++++|......+..+.++++|+.|++++|..... -...|+.|+++
T Consensus 137 ~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 137 DN--------DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CT--------TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CC--------ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 42 22333 23455566666666666544333333455556666665555431110 01235555555
Q ss_pred CcCC-cccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcC
Q 046888 741 RTTV-TELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRE 818 (1170)
Q Consensus 741 ~~~i-~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~ 818 (1170)
+|.. ..+|..+....+|+.|+|++|.+. .+|...+.++++|+.|+|++|.++.++ ..+..+++|+.|+|++
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCC-------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred CCccccccCcccccCccccEEECcCCccc-------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 5432 244444444445555555555543 234333555555555555555555533 2345555555555555
Q ss_pred CCCccc-cccccCCCCCCEEEecCCC
Q 046888 819 NNFESL-PVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 819 n~l~~l-p~~l~~l~~L~~L~L~~c~ 843 (1170)
|+++.+ |..+..+++|+.|+|++|.
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CccceECHHHhcCcccCCEEECCCCc
Confidence 555543 4445555555555555554
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.7e-22 Score=237.47 Aligned_cols=266 Identities=17% Similarity=0.160 Sum_probs=196.6
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
+|++|++++|.++.+|....+++|++|++++|.++.+| +..+++|++|+|++|.+.. +| ++.+++|++|+++++
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~L~~N-- 116 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLNCDTN-- 116 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECCSS--
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEECCCC--
Confidence 78889999988888885447888999999998888875 7788889999999888554 34 777777777777663
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhh----hccccEEEccCcCCccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF----LESLKKINLGRTTVTEL 747 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~----~~~L~~L~L~~~~i~~l 747 (1170)
.+..+| ++.+++|++|++++|...+ ++ ++.+++|+.|++++|..+..+ ...|+.|++++|.++.+
T Consensus 117 ------~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 117 ------KLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ------CCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred ------cCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence 446665 7888889999998887544 43 778888999998888655443 34588889999888888
Q ss_pred CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccccc
Q 046888 748 PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVS 827 (1170)
Q Consensus 748 p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 827 (1170)
| +..+++|+.|++++|.+.. ++ +..+++|+.|++++|+++++| +..+++|+.|++++|+++.+|
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~-------~~---l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITK-------LD---LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-------CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred c--cccCCCCCEEECcCCcCCe-------ec---cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--
Confidence 7 7888889999998888764 21 677888899999999888887 778888999999998888776
Q ss_pred ccCCCCC----------CEEEecCCCCCCCCCC-CccccceeccccccccCCCCCCCCCchhhhhhhhhccccccCCCcc
Q 046888 828 IKQLSRL----------KRLDLSNCSMLQSIPE-LPPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYDDEV 896 (1170)
Q Consensus 828 l~~l~~L----------~~L~L~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~l~ 896 (1170)
+..+++| +.|++++|+.++.+|. ..++|+.|++++|..+..++.... .++.|.+.+|+.+.
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~--------~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA--------GITELDLSQNPKLV 321 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTC--------CCSCCCCTTCTTCC
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCC--------cceEechhhcccCC
Confidence 3445544 4455555555555553 237788888888887776654222 24445555555555
Q ss_pred cc
Q 046888 897 ED 898 (1170)
Q Consensus 897 ~~ 898 (1170)
..
T Consensus 322 ~L 323 (457)
T 3bz5_A 322 YL 323 (457)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=245.77 Aligned_cols=326 Identities=17% Similarity=0.144 Sum_probs=237.5
Q ss_pred cccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCC--CCCCC-C
Q 046888 535 LNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRT--LPSNF-K 611 (1170)
Q Consensus 535 l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~--lp~~~-~ 611 (1170)
++++..+...+.+..|.++++|++|+++++.. . .++.. .+ ++|++|++++|.+.. +|..+ .
T Consensus 50 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l------------~-~lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 50 LIISHNRIQYLDISVFKFNQELEYLDLSHNKL------------V-KISCH--PT-VNLKHLDLSFNAFDALPICKEFGN 113 (520)
T ss_dssp EECCSSCCCEEEGGGGTTCTTCCEEECCSSCC------------C-EEECC--CC-CCCSEEECCSSCCSSCCCCGGGGG
T ss_pred EecCCCccCCcChHHhhcccCCCEEecCCCce------------e-ecCcc--cc-CCccEEeccCCccccccchhhhcc
Confidence 34444433344456899999999999988752 1 33333 33 489999999999986 45666 8
Q ss_pred CCcCccccCCCCCcccccccccccccc--eeecCCCCCC--CccCCC---------------------------CCCCCc
Q 046888 612 PKNLIELNLPFSKVVQIWEGKKKAFKL--KSINLSHSQY--LIRIPD---------------------------PSEAPN 660 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~~~~l~~L--~~L~Ls~~~~--l~~~p~---------------------------~~~l~~ 660 (1170)
+++|++|++++|.+.. ..+..+++| +.|+|++|.+ ....|. +..+++
T Consensus 114 l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 191 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191 (520)
T ss_dssp CTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred CCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccc
Confidence 8999999999999876 346667777 8888888876 333332 223566
Q ss_pred cccccccC-------------------------------------------------CcccccCCCccc-cccccc----
Q 046888 661 LERINLWN-------------------------------------------------CTHLNLCDTAIE-EVPSSV---- 686 (1170)
Q Consensus 661 L~~L~L~~-------------------------------------------------c~~L~l~~n~i~-~lp~~i---- 686 (1170)
|+.|++++ ++.|++++|.+. .+|..+
T Consensus 192 L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 66666544 445677788887 889988
Q ss_pred -ccccccceeeccccccccccc-ccccCC---CcccEEecCCCCCch----hhhccccEEEccCcCCcc-cCccccCCCC
Q 046888 687 -ECLTNLEYLYINRCKRLKRVS-TSICKL---KSLIWLCLNECLNLE----SFLESLKKINLGRTTVTE-LPSSFENIEG 756 (1170)
Q Consensus 687 -~~l~~L~~L~L~~~~~l~~lp-~~i~~L---~~L~~L~l~~c~~l~----~~~~~L~~L~L~~~~i~~-lp~~l~~l~~ 756 (1170)
+.+++|+.|++++|.. .+| ..++.+ .+|+.|++++|.... ..++.|+.|++++|.++. +|..+..+++
T Consensus 272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 9999999999999876 666 445444 679999998875332 224569999999999986 7888899999
Q ss_pred CCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcc-cCCCCCCCEEECcCCCCc-cccccccCCCC
Q 046888 757 LGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEE-IGCLPSLEWLELRENNFE-SLPVSIKQLSR 833 (1170)
Q Consensus 757 L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~-l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 833 (1170)
|+.|++++|.+... ..+|.. +..+++|+.|+|++|.++. +|.. +..+++|+.|+|++|+++ .+|..+. ++
T Consensus 350 L~~L~L~~N~l~~l----~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 350 LETLILQMNQLKEL----SKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp CCEEECCSSCCCBH----HHHHHH-HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred CCEEEccCCccCcc----ccchHH-HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 99999999988641 123333 7888999999999999988 8765 778899999999999886 5555443 78
Q ss_pred CCEEEecCCCCCCCCCCC---ccccceeccccccccCCCCCCCCCchhhhhhhhhccccccCC
Q 046888 834 LKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYD 893 (1170)
Q Consensus 834 L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~ 893 (1170)
|+.|+|++|... .+|.. .++|+.|++.+| .++.+|.. .. ..+..|+.|.+.+++
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~--~~--~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKSVPDG--IF--DRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCCTT--TT--TTCTTCCEEECCSSC
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCccCHH--Hh--ccCCcccEEECcCCC
Confidence 999999999744 67652 367888888887 45555442 01 123457777777664
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.9e-21 Score=231.94 Aligned_cols=266 Identities=24% Similarity=0.294 Sum_probs=169.4
Q ss_pred CCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccc
Q 046888 553 MPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGK 632 (1170)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~ 632 (1170)
+++|+.|+++++.. .++...+++|++|++++|.++.+|....+++|++|++++|.++.+|...
T Consensus 110 ~~~L~~L~l~~n~l-----------------~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~ 172 (454)
T 1jl5_A 110 PQSLKSLLVDNNNL-----------------KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172 (454)
T ss_dssp CTTCCEEECCSSCC-----------------SCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC
T ss_pred cCCCcEEECCCCcc-----------------CcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc
Confidence 36788888866532 1223345689999999999999986448889999999999998887654
Q ss_pred cccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccC
Q 046888 633 KKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICK 712 (1170)
Q Consensus 633 ~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~ 712 (1170)
.+|++|+|++|.+.. +|.++.+++|+.|+++++ .+..+|... ++|++|++++|... .+|. ++.
T Consensus 173 ---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N--------~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~ 235 (454)
T 1jl5_A 173 ---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNN--------SLKKLPDLP---LSLESIVAGNNILE-ELPE-LQN 235 (454)
T ss_dssp ---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSS--------CCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTT
T ss_pred ---ccccEEECcCCcCCc-CccccCCCCCCEEECCCC--------cCCcCCCCc---CcccEEECcCCcCC-cccc-cCC
Confidence 489999999997654 778888888888887764 334555432 46777777776533 5663 667
Q ss_pred CCcccEEecCCCCC--chhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCE
Q 046888 713 LKSLIWLCLNECLN--LESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNW 790 (1170)
Q Consensus 713 L~~L~~L~l~~c~~--l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~ 790 (1170)
+++|+.|++++|.- +...+.+|+.|++++|.++.+|.. +++|+.|++++|.+.+ +|. + .++|+.
T Consensus 236 l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-------l~~--~--~~~L~~ 301 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-------LSE--L--PPNLYY 301 (454)
T ss_dssp CTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-------ESC--C--CTTCCE
T ss_pred CCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-------ccC--c--CCcCCE
Confidence 77777777776532 112345577777777777766653 3567777777776553 111 0 135666
Q ss_pred EeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCCccccceeccccccccCCCC
Q 046888 791 LNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPELPPSLKWLQAGNCKRLQSLP 870 (1170)
Q Consensus 791 L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~ 870 (1170)
|++++|.++.++.. .++|+.|++++|+++.+|.. +++|+.|+|++|. ++.+|..+++|+.|++.++ .+..++
T Consensus 302 L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp~~l~~L~~L~L~~N-~l~~l~ 373 (454)
T 1jl5_A 302 LNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYN-PLREFP 373 (454)
T ss_dssp EECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCC
T ss_pred EECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCc-cccccchhhhccEEECCCC-CCCcCC
Confidence 66666666554421 23566666666666665543 3566666666664 3345555566666666554 333333
Q ss_pred CCCC
Q 046888 871 EIPS 874 (1170)
Q Consensus 871 ~~~~ 874 (1170)
.+|.
T Consensus 374 ~ip~ 377 (454)
T 1jl5_A 374 DIPE 377 (454)
T ss_dssp CCCT
T ss_pred CChH
Confidence 3343
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.2e-22 Score=247.04 Aligned_cols=297 Identities=16% Similarity=0.182 Sum_probs=232.8
Q ss_pred CCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCccccc
Q 046888 552 NMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIW 629 (1170)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~ 629 (1170)
.+++++.|++.++. ...++..+..-.++|++|++++|.+..+|. .| .+++|++|+|++|.+..++
T Consensus 49 ~l~~l~~l~l~~~~-------------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCE-------------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCC-------------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 36788999997653 123343332223489999999999998865 45 8999999999999999887
Q ss_pred cc-ccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccc-cccccccccceeecccccccccc
Q 046888 630 EG-KKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRV 706 (1170)
Q Consensus 630 ~~-~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l 706 (1170)
.. +..+++|++|+|++|.+....+. ++.+++|++|+|+++ .+..++ ..++.+++|++|++++|.... +
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 186 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN--------NLERIEDDTFQATTSLQNLQLSSNRLTH-V 186 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------CCCBCCTTTTTTCTTCCEEECTTSCCSB-C
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC--------cCCCCChhhhhcCCcCcEEECcCCCCCC-c
Confidence 55 68999999999999987655555 688999999988874 445554 468999999999999987544 3
Q ss_pred cccccCCCcccEEecCCCCCch-hhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCC
Q 046888 707 STSICKLKSLIWLCLNECLNLE-SFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGL 785 (1170)
Q Consensus 707 p~~i~~L~~L~~L~l~~c~~l~-~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l 785 (1170)
+ ++.+++|+.|++++|..-. ..|..|+.|++++|.+..+|..+. ++|+.|+|++|.+.+. . .+..+
T Consensus 187 ~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~~--------~-~l~~l 253 (597)
T 3oja_B 187 D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDT--------A-WLLNY 253 (597)
T ss_dssp C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCCC--------G-GGGGC
T ss_pred C--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCCC--------h-hhccC
Confidence 3 5678999999999874222 346779999999999998876553 7899999999998742 2 27889
Q ss_pred CCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCC---ccccceeccc
Q 046888 786 FSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAG 861 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~ 861 (1170)
++|+.|+|++|.++.+ |..++.+++|+.|+|++|+++.+|..+..+++|+.|+|++|... .+|.. .++|+.|++.
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence 9999999999999984 78899999999999999999999988889999999999999855 56642 3789999998
Q ss_pred cccccCCCCCCCCCchhhhhhhhhccccccC
Q 046888 862 NCKRLQSLPEIPSRPEEIDASLLQKLSKYSY 892 (1170)
Q Consensus 862 ~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c 892 (1170)
+|. +..++. ..++.|+.|.+.++
T Consensus 333 ~N~-l~~~~~-------~~~~~L~~L~l~~N 355 (597)
T 3oja_B 333 HNS-IVTLKL-------STHHTLKNLTLSHN 355 (597)
T ss_dssp SSC-CCCCCC-------CTTCCCSEEECCSS
T ss_pred CCC-CCCcCh-------hhcCCCCEEEeeCC
Confidence 875 333321 11234566666555
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=255.60 Aligned_cols=295 Identities=23% Similarity=0.255 Sum_probs=158.1
Q ss_pred cCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCC-CCCC--C-CCCcCccccC
Q 046888 545 LNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRT-LPSN--F-KPKNLIELNL 620 (1170)
Q Consensus 545 l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-lp~~--~-~~~~L~~L~L 620 (1170)
+.+.+|.++++|++|+++++.. ....+..+..++ +|++|++++|.+.. +|.. + .+++|++|+|
T Consensus 64 i~~~~f~~L~~L~~L~Ls~N~l------------~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 64 IDKEAFRNLPNLRILDLGSSKI------------YFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp ECTTTTSSCTTCCEEECTTCCC------------CEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred cCHHHhcCCCCCCEEECCCCcC------------cccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 3455788999999999987652 222344555554 67777777777764 3432 3 6777777777
Q ss_pred CCCCccccc--ccccccccceeecCCCCCCCccCCC-CCCC--CccccccccCC----------------------cccc
Q 046888 621 PFSKVVQIW--EGKKKAFKLKSINLSHSQYLIRIPD-PSEA--PNLERINLWNC----------------------THLN 673 (1170)
Q Consensus 621 ~~~~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l--~~L~~L~L~~c----------------------~~L~ 673 (1170)
++|.+..++ ..+.++++|++|+|++|.+....|. +..+ ++|+.|+++++ +.|+
T Consensus 131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 210 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210 (844)
T ss_dssp ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB
T ss_pred CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEe
Confidence 777776553 3467777777777777765443332 2222 33444433321 1222
Q ss_pred cCCCccc-cccc------------------------------------cccc--ccccceeecccccccccccccccCCC
Q 046888 674 LCDTAIE-EVPS------------------------------------SVEC--LTNLEYLYINRCKRLKRVSTSICKLK 714 (1170)
Q Consensus 674 l~~n~i~-~lp~------------------------------------~i~~--l~~L~~L~L~~~~~l~~lp~~i~~L~ 714 (1170)
+++|.+. .+|. .+.. .++|+.|++++|......|..+..++
T Consensus 211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC
Confidence 2222211 0010 1111 14566666666655555555566666
Q ss_pred cccEEecCCCCCchhh------hccccEEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCC
Q 046888 715 SLIWLCLNECLNLESF------LESLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFS 787 (1170)
Q Consensus 715 ~L~~L~l~~c~~l~~~------~~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~ 787 (1170)
+|+.|++++|...... ..+|+.|++++|.++.+ |..+..+++|+.|++++|.+. .++...+.++++
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~ 363 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-------IIQDQTFKFLEK 363 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-------CCCSSCSCSCCC
T ss_pred CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-------ccChhhhcCCCC
Confidence 6666666655321111 23466666666666654 445666666666666666553 233333555666
Q ss_pred CCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccc----------------------cccCCCCCCEEEecCCCCC
Q 046888 788 LNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV----------------------SIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 788 L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~----------------------~l~~l~~L~~L~L~~c~~l 845 (1170)
|+.|+|++|.++.++. +++|+.|++++|+++.+|. .+..+++|+.|+|++|+..
T Consensus 364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 6666666665554332 3333333333333333221 2346677777777777654
Q ss_pred CCC----CCCccccceeccccc
Q 046888 846 QSI----PELPPSLKWLQAGNC 863 (1170)
Q Consensus 846 ~~l----p~l~~~L~~L~i~~c 863 (1170)
... +...++|+.|++.++
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESC
T ss_pred ccccccccccCCccccccCCCC
Confidence 321 122355666666554
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=9e-22 Score=242.59 Aligned_cols=301 Identities=18% Similarity=0.180 Sum_probs=202.7
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCC-CCCC-CCCcCccccCCCCCccccccc
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTL-PSNF-KPKNLIELNLPFSKVVQIWEG 631 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~l~~~ 631 (1170)
++|+.|+++++.. ....+..+..++ +|++|++++|.++.+ |..| .+++|++|+|++|.++.+|..
T Consensus 52 ~~L~~L~Ls~N~i------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSI------------SELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp TTCCEEECCSSCC------------CCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CCcCEEECCCCCc------------cccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 7899999987652 111223455554 899999999999988 4555 789999999999999999987
Q ss_pred ccccccceeecCCCCCCCc-cCC-CCCCCCccccccccCCcccccCCCccccccccccccccc--ceeecccccc--ccc
Q 046888 632 KKKAFKLKSINLSHSQYLI-RIP-DPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNL--EYLYINRCKR--LKR 705 (1170)
Q Consensus 632 ~~~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L--~~L~L~~~~~--l~~ 705 (1170)
.+++|++|+|++|.+.. ..| .+.++++|++|+++++ .+.. ..+..+++| +.|++++|.. .+.
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n--------~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA--------KFRQ--LDLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS--------BCCT--TTTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC--------cccc--CchhhhhhceeeEEEeeccccccccc
Confidence 89999999999999765 233 3788899999888773 2232 234455555 7788877765 444
Q ss_pred cccccc--------------------------CCCcccEEecCCCCC--------------------------------c
Q 046888 706 VSTSIC--------------------------KLKSLIWLCLNECLN--------------------------------L 727 (1170)
Q Consensus 706 lp~~i~--------------------------~L~~L~~L~l~~c~~--------------------------------l 727 (1170)
.|..+. ++++|+.|+++++.. +
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 443333 344566666655420 0
Q ss_pred hhh-----hccccEEEccCcCCc-ccCccc--------------------------------------------------
Q 046888 728 ESF-----LESLKKINLGRTTVT-ELPSSF-------------------------------------------------- 751 (1170)
Q Consensus 728 ~~~-----~~~L~~L~L~~~~i~-~lp~~l-------------------------------------------------- 751 (1170)
..+ ...|++|++++|.+. .+|..+
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 000 115677777777666 555544
Q ss_pred ---cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC---cccCCCCCCCEEECcCCCCcc-c
Q 046888 752 ---ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP---EEIGCLPSLEWLELRENNFES-L 824 (1170)
Q Consensus 752 ---~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip---~~l~~l~~L~~L~L~~n~l~~-l 824 (1170)
..+++|+.|++++|.+.+ .+|.. +.++++|+.|+|++|.++.++ ..+..+++|+.|+|++|+++. +
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~------~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTD------SVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCT------TTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred cCccCCCCceEEECCCCcccc------chhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 456677777777776653 23333 677788888888888877644 457778888888888888875 6
Q ss_pred ccc-ccCCCCCCEEEecCCCCCCCCCCC-ccccceeccccccccCCCCCCCCCchhhhhhhhhccccccC
Q 046888 825 PVS-IKQLSRLKRLDLSNCSMLQSIPEL-PPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSY 892 (1170)
Q Consensus 825 p~~-l~~l~~L~~L~L~~c~~l~~lp~l-~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c 892 (1170)
|.. +..+++|+.|+|++|...+.+|.. +++|+.|++++| .++.+|. ... ....|+.|++.++
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~---~~~--~l~~L~~L~L~~N 483 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK---DVT--HLQALQELNVASN 483 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT---TTT--SSCCCSEEECCSS
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh---hhc--CCCCCCEEECCCC
Confidence 653 667788888888888766665543 368888888877 5555443 221 2345667777665
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.3e-21 Score=222.02 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=111.2
Q ss_pred CCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccc-cccccccccceeecCCCCCCCccCCC-CCCCCccccccc
Q 046888 591 EKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINL 666 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L 666 (1170)
++|++|++++|.++.+|. .+ .+++|++|+|++|.+..+ |..+..+++|++|+|++|.+. .+|. +. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 456666666666666654 23 566666666666666655 455666666666666666533 3332 21 34444443
Q ss_pred cCCcccccCCCccccccc-ccccccccceeecccccccc--cccccccCCCcccEEecCCCCCchhh----hccccEEEc
Q 046888 667 WNCTHLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLK--RVSTSICKLKSLIWLCLNECLNLESF----LESLKKINL 739 (1170)
Q Consensus 667 ~~c~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~~----~~~L~~L~L 739 (1170)
++ |.+..++. .+.++++|+.|++++|.... ..+..+.++++|+.|++++|. +..+ ++.|+.|++
T Consensus 129 ~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 129 HE--------NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL 199 (330)
T ss_dssp CS--------SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred CC--------CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence 33 33444443 35566666666666655422 344455556666666665542 1122 233555555
Q ss_pred cCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcC
Q 046888 740 GRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRE 818 (1170)
Q Consensus 740 ~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~ 818 (1170)
++|.++.+ |..+..+++|+.|+|++|.+.. ++...+..+++|+.|+|++|.++.+|..+..+++|+.|+|++
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISA-------VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCE-------ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCce-------eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC
Confidence 55555543 3345555555555555555432 222224444555555555555555555555555555555555
Q ss_pred CCCcccc
Q 046888 819 NNFESLP 825 (1170)
Q Consensus 819 n~l~~lp 825 (1170)
|+++.+|
T Consensus 273 N~i~~~~ 279 (330)
T 1xku_A 273 NNISAIG 279 (330)
T ss_dssp SCCCCCC
T ss_pred CcCCccC
Confidence 5555443
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=9.8e-22 Score=236.35 Aligned_cols=295 Identities=22% Similarity=0.307 Sum_probs=223.4
Q ss_pred hcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccc
Q 046888 550 FTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIW 629 (1170)
Q Consensus 550 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~ 629 (1170)
|.++++|+.|+++++... ..+. +..++ +|++|++++|.++.+|....+++|++|++++|.+..++
T Consensus 86 ~~~l~~L~~L~l~~n~l~-------------~~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIA-------------DITP-LANLT-NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCCC-------------CCGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG
T ss_pred hhccccCCEEECCCCccc-------------cChh-hcCCC-CCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh
Confidence 889999999999876531 1111 44444 89999999999999987558999999999999999876
Q ss_pred ccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeeccccccccccccc
Q 046888 630 EGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTS 709 (1170)
Q Consensus 630 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 709 (1170)
.+..+++|+.|++++ . ....+.+..+++|+.|+++++. +..++. +..+++|++|++++|...+..|
T Consensus 151 -~~~~l~~L~~L~l~~-~-~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 151 -ALSGLTSLQQLSFGN-Q-VTDLKPLANLTTLERLDISSNK--------VSDISV-LAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp -GGTTCTTCSEEEEEE-S-CCCCGGGTTCTTCCEEECCSSC--------CCCCGG-GGGCTTCSEEECCSSCCCCCGG--
T ss_pred -hhccCCcccEeecCC-c-ccCchhhccCCCCCEEECcCCc--------CCCChh-hccCCCCCEEEecCCccccccc--
Confidence 488899999999974 3 3344557888888888887753 355543 7888999999999987655444
Q ss_pred ccCCCcccEEecCCCCCc--hhh--hccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCC
Q 046888 710 ICKLKSLIWLCLNECLNL--ESF--LESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGL 785 (1170)
Q Consensus 710 i~~L~~L~~L~l~~c~~l--~~~--~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l 785 (1170)
++.+++|+.|++++|... ..+ .+.|+.|++++|.+..++. +..+++|+.|++++|.+.. ++. +..+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~--~~~l 286 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-------ISP--LAGL 286 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-------CGG--GTTC
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc-------ccc--ccCC
Confidence 678899999999887421 122 3469999999999987766 8889999999999998764 333 6788
Q ss_pred CCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCC--ccccceeccccc
Q 046888 786 FSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPEL--PPSLKWLQAGNC 863 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~i~~c 863 (1170)
++|+.|+|++|.+++++. +..+++|+.|+|++|+++.++. +..+++|+.|++++|+. ..++.+ .++|+.|++.+|
T Consensus 287 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS
T ss_pred CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc-CCchhhccCCCCCEEeCCCC
Confidence 899999999999988765 7788999999999999887764 78899999999999864 444443 367888888877
Q ss_pred cccCCCCCCCCCchhhhhhhhhccccccCC
Q 046888 864 KRLQSLPEIPSRPEEIDASLLQKLSKYSYD 893 (1170)
Q Consensus 864 ~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~ 893 (1170)
. +..++. ...++.|+.|.+.+|+
T Consensus 364 ~-l~~~~~------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 364 Q-ISDLTP------LANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CCBCGG------GTTCTTCCEEECCCEE
T ss_pred c-cCccch------hhcCCCCCEEeccCCc
Confidence 4 332221 1233457777777764
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.2e-22 Score=228.50 Aligned_cols=218 Identities=24% Similarity=0.398 Sum_probs=118.3
Q ss_pred CeeEEEecCCCCCCCCCCC-CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPSNF-KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
+++.|++++|.++.+|..+ .+++|++|+|++|.+..+|..+..+++|++|+|++|.+
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l---------------------- 139 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL---------------------- 139 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC----------------------
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc----------------------
Confidence 5666666666666666554 56666666666666666666666666666666666543
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCcc
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSS 750 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~ 750 (1170)
..+|..++++++|++|++++|...+.+|..++.. .+.+ .+. -...|+.|++++|.++.+|..
T Consensus 140 ---------~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------~~~~--~~~-~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 140 ---------RALPASIASLNRLRELSIRACPELTELPEPLAST------DASG--EHQ-GLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp ---------CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------C-CC--CEE-ESTTCCEEEEEEECCCCCCGG
T ss_pred ---------ccCcHHHhcCcCCCEEECCCCCCccccChhHhhc------cchh--hhc-cCCCCCEEECcCCCcCcchHh
Confidence 3344445555555555555555555555443320 0000 000 012234444444555555555
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCCCEEECcCCCCc-cccccc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSLEWLELRENNFE-SLPVSI 828 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l 828 (1170)
+.++++|+.|+|++|.+. .+|.. +..+++|+.|+|++|++.+ +|..++.+++|+.|+|++|++. .+|..+
T Consensus 202 l~~l~~L~~L~L~~N~l~-------~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLS-------ALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp GGGCTTCCEEEEESSCCC-------CCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred hcCCCCCCEEEccCCCCC-------cCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence 666666666666666554 23333 5555666666666655443 5555666666666666665443 555556
Q ss_pred cCCCCCCEEEecCCCCCCCCCCCccccce
Q 046888 829 KQLSRLKRLDLSNCSMLQSIPELPPSLKW 857 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~~l~~lp~l~~~L~~ 857 (1170)
..+++|+.|+|++|+.++.+|....+|..
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 66666666666666666666654433333
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.2e-21 Score=222.23 Aligned_cols=252 Identities=21% Similarity=0.280 Sum_probs=211.2
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccc-cccccccceeecCCCCCCCccCCC-CCCCCccccccccCC
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNC 669 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c 669 (1170)
+|+.++++++.++.+|..+ +++|++|++++|.++.++. .+..+++|++|+|++|.+....|. +..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~- 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK- 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-
Confidence 6889999999999999766 4689999999999998886 689999999999999998777665 88888888888776
Q ss_pred cccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCch------hh--hccccEEEccC
Q 046888 670 THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE------SF--LESLKKINLGR 741 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~------~~--~~~L~~L~L~~ 741 (1170)
|.+..+|..+. ++|++|++++|......+..+.++++|+.|++++|.... .+ .+.|+.|++++
T Consensus 110 -------n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 110 -------NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp -------SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred -------CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 55678887765 799999999998776666778999999999999985421 11 35699999999
Q ss_pred cCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCC
Q 046888 742 TTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENN 820 (1170)
Q Consensus 742 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~ 820 (1170)
|.++.+|..+. ++|+.|++++|.+.. ++...+.++++|+.|+|++|.++.++ ..+..+++|+.|+|++|+
T Consensus 181 n~l~~l~~~~~--~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 181 TNITTIPQGLP--PSLTELHLDGNKITK-------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SCCCSCCSSCC--TTCSEEECTTSCCCE-------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred CccccCCcccc--ccCCEEECCCCcCCc-------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 99999998765 899999999999764 43344889999999999999999865 478899999999999999
Q ss_pred CccccccccCCCCCCEEEecCCCCCCCCCC-C---------ccccceecccccc
Q 046888 821 FESLPVSIKQLSRLKRLDLSNCSMLQSIPE-L---------PPSLKWLQAGNCK 864 (1170)
Q Consensus 821 l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-l---------~~~L~~L~i~~c~ 864 (1170)
++.+|..+..+++|++|+|++|+.. .+|. . .++++.|++.+.+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CccCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCc
Confidence 9999999999999999999999854 4432 1 2566777777665
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.6e-21 Score=244.39 Aligned_cols=258 Identities=21% Similarity=0.207 Sum_probs=164.2
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-C
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-K 611 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~ 611 (1170)
.++++....-.+....|.++++|++|+++++.. ....+..+..++ +|++|++++|.+..+|.. | .
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI------------SKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC------------CCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc------------CccCHHHHhccc-CcCEEECCCCccCccChhhhcc
Confidence 355555544556677899999999999987642 112223334444 899999999999999874 5 8
Q ss_pred CCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccccc-c--
Q 046888 612 PKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSS-V-- 686 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~-i-- 686 (1170)
+.+|++|++++|.+..++ ..+..+++|++|+|++|.+....|. +..+++|++|+++++ .+..++.. +
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~ 167 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN--------KIQALKSEELDI 167 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS--------CCCCBCHHHHGG
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC--------cccccCHHHhhc
Confidence 999999999999999887 5689999999999999998776665 778888888888764 34555442 2
Q ss_pred ccccccceeecccccccccccccccCCCcccEEecCCCCCchhh---------hccccEEEccCcCCccc-CccccCCCC
Q 046888 687 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF---------LESLKKINLGRTTVTEL-PSSFENIEG 756 (1170)
Q Consensus 687 ~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~---------~~~L~~L~L~~~~i~~l-p~~l~~l~~ 756 (1170)
..+++|+.|++++|...+..|..+..+++|+.|.+.++...... ...|+.|++++|.+..+ |..+..++.
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 34578888888888766666666766766666666554321111 12355555555555433 333444332
Q ss_pred --CCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCCCCCEEECcCC
Q 046888 757 --LGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLPSLEWLELREN 819 (1170)
Q Consensus 757 --L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~~L~~L~L~~n 819 (1170)
|+.|+|++|.+.. +++..+..+++|+.|+|++|.+++ .|..+..+++|+.|+|++|
T Consensus 248 ~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNV-------VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp SCCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCEEECCCCCcCc-------cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 5555555554432 222224444555555555554444 2334444444444444443
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=5.3e-21 Score=228.18 Aligned_cols=240 Identities=26% Similarity=0.328 Sum_probs=168.2
Q ss_pred CCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccC
Q 046888 589 LPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWN 668 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~ 668 (1170)
.|++|++|++++|.++.+|.. +.+|++|++++|.+..++... ++|++|+|++|.+.. +|.++.+++|++|++++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 457899999999999988864 478999999999988776432 689999999998654 77888888888888776
Q ss_pred CcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCC--chhhhccccEEEccCcCCcc
Q 046888 669 CTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLN--LESFLESLKKINLGRTTVTE 746 (1170)
Q Consensus 669 c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~--l~~~~~~L~~L~L~~~~i~~ 746 (1170)
+ .+..+|..+ .+|++|++++|...+ +| .++++++|+.|++++|.- +...+..|+.|++++|.++.
T Consensus 163 N--------~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 163 N--------SLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 229 (454)
T ss_dssp S--------CCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS
T ss_pred C--------cCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCc
Confidence 4 446677643 488889998886544 66 588889999999888742 22445678899999998888
Q ss_pred cCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccc
Q 046888 747 LPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV 826 (1170)
Q Consensus 747 lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~ 826 (1170)
+|. +..+++|+.|++++|.+.. +|. .+++|+.|++++|.++++|.. +++|+.|++++|+++.+|.
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~-------l~~----~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKT-------LPD----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSS-------CCS----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC
T ss_pred ccc-cCCCCCCCEEECCCCcCCc-------ccc----cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccC
Confidence 884 8888899999998888763 332 125677777777776666543 3566666666666655442
Q ss_pred cc----------------cCC-CCCCEEEecCCCCCCCCCCCccccceeccccc
Q 046888 827 SI----------------KQL-SRLKRLDLSNCSMLQSIPELPPSLKWLQAGNC 863 (1170)
Q Consensus 827 ~l----------------~~l-~~L~~L~L~~c~~l~~lp~l~~~L~~L~i~~c 863 (1170)
.. ..+ ++|+.|+|++|.. ..+|..+++|+.|++.+|
T Consensus 295 ~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l-~~lp~~~~~L~~L~L~~N 347 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLERLIASFN 347 (454)
T ss_dssp CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS
T ss_pred cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcc-ccccccCCcCCEEECCCC
Confidence 11 011 3555666665543 235555556666666555
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.2e-22 Score=228.55 Aligned_cols=212 Identities=27% Similarity=0.372 Sum_probs=177.0
Q ss_pred CCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccc
Q 046888 612 PKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTN 691 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~ 691 (1170)
..++++|+|++|.+..+|..+..+++|++|+|++|.+ ..+|..++.+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l-------------------------------~~lp~~~~~l~~ 128 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-------------------------------MELPDTMQQFAG 128 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC-------------------------------CCCCSCGGGGTT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc-------------------------------cchhHHHhccCC
Confidence 3567777777777777777777777777777766643 567778899999
Q ss_pred cceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcC
Q 046888 692 LEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLL 771 (1170)
Q Consensus 692 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~ 771 (1170)
|++|+|++|... .+|..++++++|++|++++|..+..+|..+..+.+ +..+..+++|+.|+|++|.+.
T Consensus 129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~--------~~~~~~l~~L~~L~L~~n~l~--- 196 (328)
T 4fcg_A 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA--------SGEHQGLVNLQSLRLEWTGIR--- 196 (328)
T ss_dssp CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC---------CCCEEESTTCCEEEEEEECCC---
T ss_pred CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc--------hhhhccCCCCCEEECcCCCcC---
Confidence 999999999755 88999999999999999999877777776554332 334677999999999999876
Q ss_pred cCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc-cccccccCCCCCCEEEecCCCCCCCCCC
Q 046888 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFE-SLPVSIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 772 ~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
.+|.. +.++++|+.|+|++|.++.+|..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|+.++.+|.
T Consensus 197 ----~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 197 ----SLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp ----CCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred ----cchHh-hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 46665 88999999999999999999999999999999999999776 7888999999999999999999999996
Q ss_pred C---ccccceeccccccccCCCCC
Q 046888 851 L---PPSLKWLQAGNCKRLQSLPE 871 (1170)
Q Consensus 851 l---~~~L~~L~i~~c~~L~~l~~ 871 (1170)
. .++|+.|++++|..+..+|.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hhhcCCCCCEEeCCCCCchhhccH
Confidence 4 37899999999998887765
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1e-21 Score=225.18 Aligned_cols=213 Identities=20% Similarity=0.303 Sum_probs=103.3
Q ss_pred CeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccc-cccccccccceeecCCCCCCCccCCC-CCCCCcccccccc
Q 046888 592 KLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLW 667 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 667 (1170)
+|++|++++|.+..++. .+ .+++|++|++++|.+..+ |..+..+++|++|+|++|.+. .+|. +. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 45555555555554432 22 445555555555555544 344455555555555555432 2222 11 333333332
Q ss_pred CCcccccCCCcccccccc-cccccccceeeccccccc--ccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCC
Q 046888 668 NCTHLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRL--KRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTV 744 (1170)
Q Consensus 668 ~c~~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i 744 (1170)
+ |.+..+|.. +..+++|+.|++++|... +..|..+..+ + |+.|++++|.+
T Consensus 132 ~--------n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~------------------L~~L~l~~n~l 184 (332)
T 2ft3_A 132 D--------NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K------------------LNYLRISEAKL 184 (332)
T ss_dssp S--------SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C------------------CSCCBCCSSBC
T ss_pred C--------CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c------------------cCEEECcCCCC
Confidence 2 333444432 444555555555554432 1233333333 4 44555555555
Q ss_pred cccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCcc
Q 046888 745 TELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFES 823 (1170)
Q Consensus 745 ~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~~ 823 (1170)
+.+|..+. ++|+.|++++|.+.. ++...+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+++.
T Consensus 185 ~~l~~~~~--~~L~~L~l~~n~i~~-------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 185 TGIPKDLP--ETLNELHLDHNKIQA-------IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp SSCCSSSC--SSCSCCBCCSSCCCC-------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred CccCcccc--CCCCEEECCCCcCCc-------cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 55554433 455555555555442 222225555555555555555555432 45555555566665555555
Q ss_pred ccccccCCCCCCEEEecCCC
Q 046888 824 LPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 824 lp~~l~~l~~L~~L~L~~c~ 843 (1170)
+|..+..+++|+.|+|++|+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSC
T ss_pred cChhhhcCccCCEEECCCCC
Confidence 55555555556666665554
No 51
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.87 E-value=5.4e-24 Score=209.40 Aligned_cols=134 Identities=22% Similarity=0.339 Sum_probs=96.8
Q ss_pred CCCCCCccEEeccccccccCchHHHHHHHHhc--CCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCc
Q 046888 4 SSSSCNYDVFLSFRGEDTRENFTSHLYAALCG--KKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWC 80 (1170)
Q Consensus 4 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wc 80 (1170)
+...+.|||||||+++|+ .|+.||+++|++ .|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 335679999999999995 589999999998 599999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEeeeCccc----cccccccHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 046888 81 PNELVNILKCKNLNGQIVIPIYYHVSPSD----VRKQTGTFGEGFVRLEQQFKEKAETVQKWRDVM 142 (1170)
Q Consensus 81 l~El~~~~~~~~~~~~~v~pif~~v~ps~----vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~aL 142 (1170)
..|+..|+.+...+..+||||||+|++.+ +|....... ..++..|....+.|.+|++||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99999999987444447889999998544 455443221 123455556678899999876
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.2e-22 Score=228.48 Aligned_cols=243 Identities=22% Similarity=0.261 Sum_probs=175.5
Q ss_pred CCeeEEEecCCCCC---CCCCCC-CCCcCccccCCC-CCcc-cccccccccccceeecCCCCCCCccCCC-CCCCCcccc
Q 046888 591 EKLRYLHLHKYPLR---TLPSNF-KPKNLIELNLPF-SKVV-QIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLER 663 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~---~lp~~~-~~~~L~~L~L~~-~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~ 663 (1170)
.+++.|+++++.+. .+|..+ .+++|++|++++ |.+. .+|..+..+++|++|+|++|.+...+|. +..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 36888888888887 367666 778888888884 7766 6777788888888888888887666665 667777777
Q ss_pred ccccCCcccccCCCccc-ccccccccccccceeecccccccccccccccCCC-cccEEecCCCCCchhhhccccEEEccC
Q 046888 664 INLWNCTHLNLCDTAIE-EVPSSVECLTNLEYLYINRCKRLKRVSTSICKLK-SLIWLCLNECLNLESFLESLKKINLGR 741 (1170)
Q Consensus 664 L~L~~c~~L~l~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~c~~l~~~~~~L~~L~L~~ 741 (1170)
|+|+++ .+. .+|..++.+++|++|++++|...+.+|..++.++ +|+.|++++
T Consensus 130 L~Ls~N--------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~------------------ 183 (313)
T 1ogq_A 130 LDFSYN--------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR------------------ 183 (313)
T ss_dssp EECCSS--------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS------------------
T ss_pred EeCCCC--------ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC------------------
Confidence 766653 334 6777788888888888888877777777777776 666666555
Q ss_pred cCCc-ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCC
Q 046888 742 TTVT-ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENN 820 (1170)
Q Consensus 742 ~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~ 820 (1170)
|.++ .+|..+..++ |+.|++++|.+.. .++..+..+++|+.|+|++|.++..+..+..+++|+.|+|++|+
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 4444 4566677776 8888888887653 22333777888888888888887655557778888888888888
Q ss_pred Cc-cccccccCCCCCCEEEecCCCCCCCCCCC--ccccceeccccccccC
Q 046888 821 FE-SLPVSIKQLSRLKRLDLSNCSMLQSIPEL--PPSLKWLQAGNCKRLQ 867 (1170)
Q Consensus 821 l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~i~~c~~L~ 867 (1170)
++ .+|..+..+++|+.|+|++|+..+.+|.. .++|+.|++.+++.+.
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 87 67878888888888888888776677764 2455666666655444
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.2e-21 Score=224.62 Aligned_cols=241 Identities=20% Similarity=0.231 Sum_probs=186.4
Q ss_pred CCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCC-CCCC-CCCcCccccCCCCCcccccc
Q 046888 553 MPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTL-PSNF-KPKNLIELNLPFSKVVQIWE 630 (1170)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~l~~ 630 (1170)
.++|+.|+++++.. ....+..+..++ +|++|++++|.++.+ |..+ .+++|++|++++|.+..+|.
T Consensus 53 ~~~l~~L~l~~n~i------------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 53 SPDTTLLDLQNNDI------------SELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp CTTCCEEECCSSCC------------CEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS
T ss_pred CCCCeEEECCCCcC------------CccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc
Confidence 36899999987642 222234555555 899999999999987 5555 78999999999999999998
Q ss_pred cccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCccc---ccccccccccccceeecccccccccc
Q 046888 631 GKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIE---EVPSSVECLTNLEYLYINRCKRLKRV 706 (1170)
Q Consensus 631 ~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~---~lp~~i~~l~~L~~L~L~~~~~l~~l 706 (1170)
.+. ++|++|+|++|.+....+. +..+++|+.|+++++ .+. ..|..+..+ +|+.|++++|.. ..+
T Consensus 120 ~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l 187 (332)
T 2ft3_A 120 NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN--------PLENSGFEPGAFDGL-KLNYLRISEAKL-TGI 187 (332)
T ss_dssp SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC--------CCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSC
T ss_pred ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC--------ccccCCCCcccccCC-ccCEEECcCCCC-Ccc
Confidence 776 8999999999997655444 788999999888774 333 345667777 999999999874 446
Q ss_pred cccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccC-ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCC
Q 046888 707 STSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELP-SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGL 785 (1170)
Q Consensus 707 p~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l 785 (1170)
|..+. + .|+.|++++|.++.++ ..+..+++|+.|+|++|.+.. ++...+..+
T Consensus 188 ~~~~~--~------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-------~~~~~~~~l 240 (332)
T 2ft3_A 188 PKDLP--E------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-------IENGSLSFL 240 (332)
T ss_dssp CSSSC--S------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-------CCTTGGGGC
T ss_pred Ccccc--C------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-------CChhHhhCC
Confidence 65432 3 4556666667777665 578889999999999998764 444347888
Q ss_pred CCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccccc-ccC------CCCCCEEEecCCCCC
Q 046888 786 FSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVS-IKQ------LSRLKRLDLSNCSML 845 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~-l~~------l~~L~~L~L~~c~~l 845 (1170)
++|+.|+|++|.++.+|..+..+++|+.|+|++|+++.+|.. +.. .++|+.|++++|+..
T Consensus 241 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999999999999999899999999999999999887632 222 467899999999854
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=6.2e-22 Score=224.70 Aligned_cols=249 Identities=20% Similarity=0.236 Sum_probs=198.9
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecC-CCCC-CCCCCC-CCCcCccccCCCCCcc-ccc
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHK-YPLR-TLPSNF-KPKNLIELNLPFSKVV-QIW 629 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~-~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~l~ 629 (1170)
.+++.|+++++... ....++..+..++ +|++|++++ |.+. .+|..+ .+++|++|+|++|.+. .+|
T Consensus 50 ~~l~~L~L~~~~l~----------~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP----------KPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCS----------SCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCcc----------CCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 46778888765421 0114455566665 889999984 7766 677766 7889999999999998 788
Q ss_pred ccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCccc-cccccccccc-ccceeecccccccccc
Q 046888 630 EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIE-EVPSSVECLT-NLEYLYINRCKRLKRV 706 (1170)
Q Consensus 630 ~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~-~lp~~i~~l~-~L~~L~L~~~~~l~~l 706 (1170)
..+..+++|++|+|++|.+...+|. +..+++|++|+++++ .+. .+|..++.++ +|++|++++|...+.+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--------~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN--------RISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS--------CCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC--------cccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 8899999999999999988767776 778888888877764 445 7898999998 9999999999988888
Q ss_pred cccccCCCcccEEecCCCCCchhhhccccEEEccCcCCc-ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCC
Q 046888 707 STSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVT-ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGL 785 (1170)
Q Consensus 707 p~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l 785 (1170)
|..++.++ |+.|++++ |.++ ..|..+..+++|+.|+|++|.+.. .+|. +..+
T Consensus 191 ~~~~~~l~-L~~L~Ls~------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~--~~~l 243 (313)
T 1ogq_A 191 PPTFANLN-LAFVDLSR------------------NMLEGDASVLFGSDKNTQKIHLAKNSLAF------DLGK--VGLS 243 (313)
T ss_dssp CGGGGGCC-CSEEECCS------------------SEEEECCGGGCCTTSCCSEEECCSSEECC------BGGG--CCCC
T ss_pred ChHHhCCc-ccEEECcC------------------CcccCcCCHHHhcCCCCCEEECCCCceee------ecCc--cccc
Confidence 98887775 66666655 4444 356678899999999999999864 2232 6788
Q ss_pred CCCCEEeCCCCCCC-CCCcccCCCCCCCEEECcCCCCc-cccccccCCCCCCEEEecCCCCCCCCC
Q 046888 786 FSLNWLNLNNCALT-AIPEEIGCLPSLEWLELRENNFE-SLPVSIKQLSRLKRLDLSNCSMLQSIP 849 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~-~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp 849 (1170)
++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999999 58999999999999999999998 67754 889999999999999665544
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.9e-20 Score=232.64 Aligned_cols=121 Identities=26% Similarity=0.271 Sum_probs=75.5
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecC-CCcCCCCCeeEEEecCCCCCCCCCC-C-
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLD-GLDYLPEKLRYLHLHKYPLRTLPSN-F- 610 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~- 610 (1170)
.+|++....-.+...+|.++++|++|+++++.. ..++. .+..++ +|++|+|++|.++.+|.. |
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-------------~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-------------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-------------CEECTTTTTTCT-TCCEEECTTCCCCEECGGGGT
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-------------CCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhc
Confidence 456666555556667788888888888876542 12222 333443 677777777777776643 3
Q ss_pred CCCcCccccCCCCCccccccc-ccccccceeecCCCCCCCc-cCCC-CCCCCccccccccC
Q 046888 611 KPKNLIELNLPFSKVVQIWEG-KKKAFKLKSINLSHSQYLI-RIPD-PSEAPNLERINLWN 668 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~-~~p~-~~~l~~L~~L~L~~ 668 (1170)
++.+|++|+|++|+++.++.. +..+++|++|+|++|.+.. ..|. ++.+++|++|+|++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 667777777777777766643 5667777777777776543 2333 45566666666654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.9e-20 Score=222.60 Aligned_cols=235 Identities=24% Similarity=0.312 Sum_probs=156.9
Q ss_pred eeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCc
Q 046888 593 LRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCT 670 (1170)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~ 670 (1170)
.+.++..+..++.+|..+ +.+|++|+|++|++..++ ..+..+++|++|+|++|.+....|. +.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-- 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-- 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC--
Confidence 345666666666666544 256777777777776553 4566777777777777765554443 56666666666555
Q ss_pred ccccCCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhh-------ccccEEEccCc
Q 046888 671 HLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFL-------ESLKKINLGRT 742 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~-------~~L~~L~L~~~ 742 (1170)
|.+..+|.. ++.+++|++|+|++|......+..+.++++|+.|++++|..+..++ .+|+.|++++|
T Consensus 133 ------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 133 ------NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ------SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred ------CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 344555543 6667777777777776443333456677777777777665554432 23666666677
Q ss_pred CCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCC
Q 046888 743 TVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNF 821 (1170)
Q Consensus 743 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l 821 (1170)
.++.+| .+..+++|+.|+|++|.+.. +++..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|++
T Consensus 207 ~l~~~~-~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 207 NIKDMP-NLTPLVGLEELEMSGNHFPE-------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CCSSCC-CCTTCTTCCEEECTTSCCSE-------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccccc-cccccccccEEECcCCcCcc-------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 777765 36777888888888887653 4444477888888888888888774 55677788888888888888
Q ss_pred ccccc-cccCCCCCCEEEecCCCC
Q 046888 822 ESLPV-SIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 822 ~~lp~-~l~~l~~L~~L~L~~c~~ 844 (1170)
+.+|. .+..+++|+.|+|++|+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccChHHhccccCCCEEEccCCCc
Confidence 87764 356778888888888863
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=222.32 Aligned_cols=235 Identities=22% Similarity=0.281 Sum_probs=156.4
Q ss_pred eeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCc
Q 046888 593 LRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCT 670 (1170)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~ 670 (1170)
.+.++..+..++.+|..+. .+++.|+|++|++..++ ..+..+++|++|+|++|.+....+. +.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-- 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-- 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS--
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC--
Confidence 3455566666666665442 46666666666666554 4456666666666666664443333 55556655555544
Q ss_pred ccccCCCccccccc-ccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhh-------ccccEEEccCc
Q 046888 671 HLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFL-------ESLKKINLGRT 742 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~-------~~L~~L~L~~~ 742 (1170)
|.+..+|. .+..+++|++|+|++|......+..+.++++|+.|++++|..+..++ .+|+.|++++|
T Consensus 122 ------n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 122 ------NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp ------SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred ------CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 33455554 35666666666666665443333456666666666666655444332 23666777777
Q ss_pred CCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCC
Q 046888 743 TVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNF 821 (1170)
Q Consensus 743 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l 821 (1170)
.++.+|. +..+++|+.|+|++|.+.. +++..+.++++|+.|+|++|.++.+ +..+..+++|+.|+|++|++
T Consensus 196 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 196 NLREIPN-LTPLIKLDELDLSGNHLSA-------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CCSSCCC-CTTCSSCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred cCccccc-cCCCcccCEEECCCCccCc-------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 7777774 7788889999999888763 4444488888899999999988875 55678888999999999988
Q ss_pred ccccc-cccCCCCCCEEEecCCCC
Q 046888 822 ESLPV-SIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 822 ~~lp~-~l~~l~~L~~L~L~~c~~ 844 (1170)
+.+|. .+..+++|+.|+|++|+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhHhccccCCCEEEcCCCCc
Confidence 87764 457788899999988874
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=2e-20 Score=209.46 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=178.0
Q ss_pred eEEEecCCCCCCCCCCCCCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcc
Q 046888 594 RYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTH 671 (1170)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~ 671 (1170)
+.++++++.++.+|..+ +++|++|++++|.+..++ ..+..+++|++|+|++|.+....|. +..+++|++|+++++..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 67788888888888754 568999999999999887 4578899999999999987666554 77888888888877543
Q ss_pred cccCCCccccc-ccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-
Q 046888 672 LNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS- 749 (1170)
Q Consensus 672 L~l~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~- 749 (1170)
+ ..+ |..+..+++|++|++++|......|..+.++++|++|++++ |.++.+|.
T Consensus 93 l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------n~l~~~~~~ 147 (285)
T 1ozn_A 93 L-------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD------------------NALQALPDD 147 (285)
T ss_dssp C-------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS------------------SCCCCCCTT
T ss_pred c-------cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC------------------CcccccCHh
Confidence 3 666 55688889999999999887666666677777777666655 45565654
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccccc-c
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLPV-S 827 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~-~ 827 (1170)
.+..+++|+.|+|++|.+. .++...+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+|. .
T Consensus 148 ~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRIS-------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp TTTTCTTCCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred HhccCCCccEEECCCCccc-------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence 4788999999999999876 45555588899999999999999985 7889999999999999999998874 5
Q ss_pred ccCCCCCCEEEecCCCCCCCC
Q 046888 828 IKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 828 l~~l~~L~~L~L~~c~~l~~l 848 (1170)
+..+++|+.|+|++|+.....
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSG
T ss_pred cccCcccCEEeccCCCccCCC
Confidence 889999999999999865443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=4.9e-20 Score=226.48 Aligned_cols=250 Identities=19% Similarity=0.204 Sum_probs=161.6
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccccccc
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKK 633 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~ 633 (1170)
.+++.|+++++.. ..++..+ +++|++|++++|.++.+|. .+++|++|+|++|+++.+|.
T Consensus 40 ~~l~~L~ls~n~L-------------~~lp~~l---~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGL-------------TTLPDCL---PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCC-------------SCCCSCC---CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCc-------------CccChhh---CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---
Confidence 4688888876542 1233322 3588888888888888887 57888888888888888876
Q ss_pred ccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCC
Q 046888 634 KAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKL 713 (1170)
Q Consensus 634 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 713 (1170)
.+++|++|+|++|.+. .+|. .+++|+.|++++ |.+..+|.. +++|++|++++|. +..+|. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~-~l~~--~l~~L~~L~L~~--------N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~ 160 (622)
T 3g06_A 99 LPPGLLELSIFSNPLT-HLPA--LPSGLCKLWIFG--------NQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LP 160 (622)
T ss_dssp CCTTCCEEEECSCCCC-CCCC--CCTTCCEEECCS--------SCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CC
T ss_pred CCCCCCEEECcCCcCC-CCCC--CCCCcCEEECCC--------CCCCcCCCC---CCCCCEEECcCCc-CCCcCC---cc
Confidence 6788888888888744 3444 445555555444 556777764 4788888888875 344554 34
Q ss_pred CcccEEecCCCC--CchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEE
Q 046888 714 KSLIWLCLNECL--NLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWL 791 (1170)
Q Consensus 714 ~~L~~L~l~~c~--~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L 791 (1170)
++|+.|++++|. .+...+++|+.|++++|.++.+|.. +++|+.|++++|.+.. +|. .+++|+.|
T Consensus 161 ~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-------l~~----~~~~L~~L 226 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-------LPA----LPSGLKEL 226 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-------CCC----CCTTCCEE
T ss_pred CCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-------cCC----CCCCCCEE
Confidence 567777777653 1122235577777777777766653 3567777777776552 332 23567777
Q ss_pred eCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCCc---cccceeccccc
Q 046888 792 NLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPELP---PSLKWLQAGNC 863 (1170)
Q Consensus 792 ~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~i~~c 863 (1170)
+|++|.++.+| ..+++|+.|+|++|+|+.+|. .+++|+.|+|++|... .+|... ++|+.|++.++
T Consensus 227 ~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 227 IVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp ECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred EccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 77777777766 345677777777777777765 5667777777777533 555422 34555555544
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=7e-20 Score=225.16 Aligned_cols=240 Identities=20% Similarity=0.236 Sum_probs=195.9
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccccccc
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKK 633 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~ 633 (1170)
++|+.|+++++.. . .++. .+++|++|++++|.++.+|. .+++|++|+|++|.++.+|.
T Consensus 61 ~~L~~L~L~~N~l------------~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--- 118 (622)
T 3g06_A 61 AHITTLVIPDNNL------------T-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--- 118 (622)
T ss_dssp TTCSEEEECSCCC------------S-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---
T ss_pred CCCcEEEecCCCC------------C-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---
Confidence 6899999987652 1 1222 34699999999999999998 78999999999999999987
Q ss_pred ccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCC
Q 046888 634 KAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKL 713 (1170)
Q Consensus 634 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 713 (1170)
.+++|+.|+|++|.+. .+|. .+++|++|+|++ |.+..+|. .+++|+.|++++|.. ..+| ..+
T Consensus 119 ~l~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~--------N~l~~l~~---~~~~L~~L~L~~N~l-~~l~---~~~ 180 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSD--------NQLASLPA---LPSELCKLWAYNNQL-TSLP---MLP 180 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCS--------SCCSCCCC---CCTTCCEEECCSSCC-SCCC---CCC
T ss_pred CCCCcCEEECCCCCCC-cCCC--CCCCCCEEECcC--------CcCCCcCC---ccCCCCEEECCCCCC-CCCc---ccC
Confidence 6789999999999854 4555 246677666665 55577776 356899999999864 4577 367
Q ss_pred CcccEEecCCCCC--chhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEE
Q 046888 714 KSLIWLCLNECLN--LESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWL 791 (1170)
Q Consensus 714 ~~L~~L~l~~c~~--l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L 791 (1170)
++|+.|++++|.. +...+.+|+.|++++|.++.+|.. +++|+.|+|++|.+.. +| ..+++|+.|
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-------lp----~~l~~L~~L 246 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-------LP----VLPSELKEL 246 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-------CC----CCCTTCCEE
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-------CC----CCCCcCcEE
Confidence 8999999998742 223456799999999999999864 4889999999998763 44 356899999
Q ss_pred eCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCC
Q 046888 792 NLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 792 ~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
+|++|+++.+|. .+++|+.|+|++|+|+.+|..+..+++|+.|+|++|+..+..|.
T Consensus 247 ~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 247 MVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 999999999987 67899999999999999999999999999999999997765554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.2e-20 Score=211.41 Aligned_cols=233 Identities=21% Similarity=0.313 Sum_probs=111.5
Q ss_pred EEEecCCCCCCCCCCCCCCcCccccCCCCCccccccc-ccccccceeecCCCCCCCccC---CCCCCCCccccccccCCc
Q 046888 595 YLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEG-KKKAFKLKSINLSHSQYLIRI---PDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 595 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~---p~~~~l~~L~~L~L~~c~ 670 (1170)
.++++++.++.+|..+ +++|++|+|++|.++.+|.. +..+++|++|+|++|.+.... +.+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-- 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-- 87 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS--
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC--
Confidence 3455555555555533 24566666666666655544 355666666666665543210 1122334444443333
Q ss_pred ccccCCCcccccccccccccccceeeccccccccccc-ccccCCCcccEEecCCCCCchhh------hccccEEEccCcC
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS-TSICKLKSLIWLCLNECLNLESF------LESLKKINLGRTT 743 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~~------~~~L~~L~L~~~~ 743 (1170)
|.+..+|..+..+++|++|++++|......+ ..+..+++|++|++++|...... .+.|+.|++++|.
T Consensus 88 ------n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 88 ------NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ------CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred ------CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 3345555556666666666666655333222 34555555555555544211100 1123333333333
Q ss_pred Ccc--cCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCC
Q 046888 744 VTE--LPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENN 820 (1170)
Q Consensus 744 i~~--lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~ 820 (1170)
+.. +|..+..+++|+.|++++|.+.. +++..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQ-------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCC-------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 332 44455555555555555555432 222224455555555555555555432 44555555555555555
Q ss_pred Ccc-ccccccCCC-CCCEEEecCCC
Q 046888 821 FES-LPVSIKQLS-RLKRLDLSNCS 843 (1170)
Q Consensus 821 l~~-lp~~l~~l~-~L~~L~L~~c~ 843 (1170)
++. .|..+..++ +|+.|+|++|+
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CcccCHHHHHhhhccCCEEEccCCC
Confidence 553 233444442 55555555554
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.7e-21 Score=221.58 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=154.8
Q ss_pred CCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCcccccc
Q 046888 590 PEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERIN 665 (1170)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~ 665 (1170)
+++|++|++++|.++.+|. .+ .+++|++|++++|.+..++ ..+..+++|++|+|++|.+....+. +..+++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 3477777777777777765 33 6777777777777777664 4467777777777777775543333 56666666666
Q ss_pred ccCCcccccCCCccccccc--ccccccccceeecccccccccc-cccccCCCcccEEecCCCCCchhh------hccccE
Q 046888 666 LWNCTHLNLCDTAIEEVPS--SVECLTNLEYLYINRCKRLKRV-STSICKLKSLIWLCLNECLNLESF------LESLKK 736 (1170)
Q Consensus 666 L~~c~~L~l~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~~------~~~L~~ 736 (1170)
+++ |.+..+|. .+..+++|++|++++|.....+ |..++++++|+.|++++|...... .+.|++
T Consensus 131 L~~--------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 131 LLG--------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTT--------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCC--------CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 655 44466665 5677777777777777544444 455677777777777766422111 234667
Q ss_pred EEccCcCCcccCccc-cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCC
Q 046888 737 INLGRTTVTELPSSF-ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPS 810 (1170)
Q Consensus 737 L~L~~~~i~~lp~~l-~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~ 810 (1170)
|++++|.++.+|..+ ..+++|+.|++++|.+..... ..++. ......++.++|+++.+.+ +|..+..+++
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~--~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF--SELST--GETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC--C--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccc--ccccc--ccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 777777776665543 346677777777776654211 01111 2334556666776666653 5666677777
Q ss_pred CCEEECcCCCCccccccc-cCCCCCCEEEecCCCCCCC
Q 046888 811 LEWLELRENNFESLPVSI-KQLSRLKRLDLSNCSMLQS 847 (1170)
Q Consensus 811 L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~c~~l~~ 847 (1170)
|+.|+|++|+++.+|..+ ..+++|++|+|++|+....
T Consensus 279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 777777777777777654 6677777777777764443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=5.1e-21 Score=217.15 Aligned_cols=235 Identities=21% Similarity=0.188 Sum_probs=182.0
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccc--cccccc-------ccccceeecCCCCCCCccCCC-C--CCCC
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQ--IWEGKK-------KAFKLKSINLSHSQYLIRIPD-P--SEAP 659 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~-~--~~l~ 659 (1170)
+|++|++.+|.+ .+|..+. ..|+.|+|++|.+.. +|..+. .+++|++|+|++|.+....|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 567777788888 6776442 228889999988863 455444 688999999999998777776 3 7788
Q ss_pred ccccccccCCcccccCCCcccccccccccc-----cccceeecccccccccccccccCCCcccEEecCCCCCchh-----
Q 046888 660 NLERINLWNCTHLNLCDTAIEEVPSSVECL-----TNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLES----- 729 (1170)
Q Consensus 660 ~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~----- 729 (1170)
+|++|+|++ |.+..+|..++.+ ++|++|++++|...+..|..++++++|++|++++|.....
T Consensus 122 ~L~~L~Ls~--------N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 122 DLNILNLRN--------VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CCSEEEEES--------CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred CccEEEccC--------CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 888887776 4556677777777 8999999999987776668899999999999999864332
Q ss_pred -----hhccccEEEccCcCCcccC---c-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC
Q 046888 730 -----FLESLKKINLGRTTVTELP---S-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA 800 (1170)
Q Consensus 730 -----~~~~L~~L~L~~~~i~~lp---~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ 800 (1170)
-...|+.|++++|.++.++ . .+..+++|+.|+|++|.+.+. .|...+..+++|+.|+|++|.++.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA------AGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS------CCCSCCCCCTTCCEEECTTSCCSS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc------cchhhhhhcCCCCEEECCCCccCh
Confidence 1245888899998888443 2 345788999999999988752 222236677899999999999999
Q ss_pred CCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCC
Q 046888 801 IPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 801 ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 845 (1170)
+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+..
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 888776 889999999999998886 888999999999998753
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=3.6e-20 Score=209.62 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=170.0
Q ss_pred CCCeeEEEecCCCCCCCCCC-C-CCCcCccccCCCCCcccc---cccccccccceeecCCCCCCCccCCCCCCCCccccc
Q 046888 590 PEKLRYLHLHKYPLRTLPSN-F-KPKNLIELNLPFSKVVQI---WEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERI 664 (1170)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L 664 (1170)
+++|++|++++|.++.+|.. + .+++|++|+|++|.+..+ +..+..+++|++|+|++|.+....+.+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 45788888888888888765 3 778888888888888755 455667888888888888765433336677777777
Q ss_pred cccCCcccccCCCccccccc--ccccccccceeecccccccccccccccCCCcccEEecCCCCCch-hh------hcccc
Q 046888 665 NLWNCTHLNLCDTAIEEVPS--SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLE-SF------LESLK 735 (1170)
Q Consensus 665 ~L~~c~~L~l~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~-~~------~~~L~ 735 (1170)
++++ |.+..++. .+..+++|++|++++|......|..+..+++|++|++++|.... .+ .+.|+
T Consensus 107 ~l~~--------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 107 DFQH--------SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp ECTT--------SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ECCC--------CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 6665 44566653 57788888888888887777777778888888888888874332 12 34588
Q ss_pred EEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCCCC-CCC
Q 046888 736 KINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGCLP-SLE 812 (1170)
Q Consensus 736 ~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~l~-~L~ 812 (1170)
.|++++|.++.+ |..+..+++|+.|+|++|.+.. ++...+..+++|+.|+|++|.++. .|..+..++ +|+
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-------CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-------cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 899999999977 6789999999999999999864 444448889999999999999997 567788884 999
Q ss_pred EEECcCCCCcc
Q 046888 813 WLELRENNFES 823 (1170)
Q Consensus 813 ~L~L~~n~l~~ 823 (1170)
.|+|++|.++.
T Consensus 252 ~L~L~~N~~~~ 262 (306)
T 2z66_A 252 FLNLTQNDFAC 262 (306)
T ss_dssp EEECTTCCEEC
T ss_pred EEEccCCCeec
Confidence 99999998873
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=4.1e-18 Score=213.11 Aligned_cols=311 Identities=23% Similarity=0.278 Sum_probs=218.0
Q ss_pred ecccccccccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecC-CCcCCCCCeeEEEecCCCCCCCCCC-C-
Q 046888 534 FLNLSKIKGINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLD-GLDYLPEKLRYLHLHKYPLRTLPSN-F- 610 (1170)
Q Consensus 534 ~l~l~~~~~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~- 610 (1170)
.+|++..+.-.+...+|.++++|++|+++++.. ..++. .+..+ .+|++|++++|.++.+|.. |
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-------------~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-------------QSLALGAFSGL-SSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-------------CEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCT
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-------------CCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhh
Confidence 344444444445667899999999999987652 12332 23444 4899999999999999864 4
Q ss_pred CCCcCccccCCCCCccc--ccccccccccceeecCCCCCCCccCCC-CCCC---------------------------Cc
Q 046888 611 KPKNLIELNLPFSKVVQ--IWEGKKKAFKLKSINLSHSQYLIRIPD-PSEA---------------------------PN 660 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l---------------------------~~ 660 (1170)
.+++|++|+|++|.+.. +|..+..+++|++|+|++|.+....|. +..+ ..
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 88999999999999874 467788899999999999876443221 1000 00
Q ss_pred cccccccC------------------------------------------------------------------------
Q 046888 661 LERINLWN------------------------------------------------------------------------ 668 (1170)
Q Consensus 661 L~~L~L~~------------------------------------------------------------------------ 668 (1170)
++.+++.+
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence 11111000
Q ss_pred ------------------------CcccccCCCcccccc--------------------cccccccccceeeccccccc-
Q 046888 669 ------------------------CTHLNLCDTAIEEVP--------------------SSVECLTNLEYLYINRCKRL- 703 (1170)
Q Consensus 669 ------------------------c~~L~l~~n~i~~lp--------------------~~i~~l~~L~~L~L~~~~~l- 703 (1170)
++.|++.++.+..++ .....+++|+.|++++|...
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 001111111111111 11234677777777765431
Q ss_pred ------------------------ccccccccCCCcccEEecCCCCCchhh-------hccccEEEccCcCCccc-Cccc
Q 046888 704 ------------------------KRVSTSICKLKSLIWLCLNECLNLESF-------LESLKKINLGRTTVTEL-PSSF 751 (1170)
Q Consensus 704 ------------------------~~lp~~i~~L~~L~~L~l~~c~~l~~~-------~~~L~~L~L~~~~i~~l-p~~l 751 (1170)
..++..+..+++|+.+++.++...... ...++.++++.|.+..+ |..+
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 123445778999999999877543322 34589999999999865 4567
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCcccc-cccc
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLP-VSIK 829 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 829 (1170)
..+++|+.|+|++|.... .+++..+..+++|+.|+|++|+++++ |..+.++++|+.|+|++|+|+.+| ..+.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQE------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp TTCTTCCEEECTTCEEGG------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccchhhhhhhhhhccccc------ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 889999999999997543 23333488999999999999999985 678999999999999999999885 5689
Q ss_pred CCCCCCEEEecCCCCCCCCCC----Cccccceecccccc
Q 046888 830 QLSRLKRLDLSNCSMLQSIPE----LPPSLKWLQAGNCK 864 (1170)
Q Consensus 830 ~l~~L~~L~L~~c~~l~~lp~----l~~~L~~L~i~~c~ 864 (1170)
.+++|+.|+|++|+..+..|. +|++|+.|++++++
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999999999997776664 45788999988754
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.3e-20 Score=212.36 Aligned_cols=236 Identities=16% Similarity=0.224 Sum_probs=141.9
Q ss_pred CeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCC
Q 046888 592 KLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNC 669 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 669 (1170)
+|++|++++|.+..++. .+ .+++|++|+|++|.+..++. +..+++|++|+|++|.+.. +| ..++|+.|++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~---~~~~L~~L~l~~- 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL---VGPSIETLHAAN- 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EE---ECTTCCEEECCS-
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-cc---CCCCcCEEECCC-
Confidence 56666666666665542 22 55666666666666655443 5566666666666665322 21 113444444333
Q ss_pred cccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCccc-C
Q 046888 670 THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTEL-P 748 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~l-p 748 (1170)
|.+..++.. .+++|+.|++++|......|..++.+++|+.|++++ |.++.+ |
T Consensus 109 -------n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~------------------N~l~~~~~ 161 (317)
T 3o53_A 109 -------NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL------------------NEIDTVNF 161 (317)
T ss_dssp -------SCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT------------------SCCCEEEG
T ss_pred -------CccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC------------------CCCCcccH
Confidence 333444332 245566666666654444444455555555555444 455543 2
Q ss_pred ccc-cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccccc
Q 046888 749 SSF-ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVS 827 (1170)
Q Consensus 749 ~~l-~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 827 (1170)
..+ ..+++|+.|+|++|.+.. ++. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|+++.+|..
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~-------~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYD-------VKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCE-------EEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred HHHhhccCcCCEEECCCCcCcc-------ccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH
Confidence 333 367788888888887653 222 3347788888888888888777777888888888888888888877
Q ss_pred ccCCCCCCEEEecCCCCC-CCCCCC---ccccceeccccccccCCC
Q 046888 828 IKQLSRLKRLDLSNCSML-QSIPEL---PPSLKWLQAGNCKRLQSL 869 (1170)
Q Consensus 828 l~~l~~L~~L~L~~c~~l-~~lp~l---~~~L~~L~i~~c~~L~~l 869 (1170)
+..+++|+.|+|++|+.. ..+|.. .+.|+.|++.++..++..
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 888888888888888765 334332 245666666666655543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.8e-20 Score=213.15 Aligned_cols=231 Identities=17% Similarity=0.151 Sum_probs=153.0
Q ss_pred eeEEEecCCCCCCCCCCC--CCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCCCCCCCccccccccCC
Q 046888 593 LRYLHLHKYPLRTLPSNF--KPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNC 669 (1170)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 669 (1170)
++.++++.+.+...+..+ .+++|++|+|++|.+..++ ..+..+++|++|+|++|.+....| +..+++|++|+++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 444444444443222221 3456677777777666554 456666667777776666543333 555555555555442
Q ss_pred cccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc
Q 046888 670 THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS 749 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~ 749 (1170)
.+..+|. .++|++|++++|......+. .+ +.|+.|++++|.++.++.
T Consensus 91 --------~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~------------------~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 91 --------YVQELLV----GPSIETLHAANNNISRVSCS---RG------------------QGKKNIYLANNKITMLRD 137 (317)
T ss_dssp --------EEEEEEE----CTTCCEEECCSSCCSEEEEC---CC------------------SSCEEEECCSSCCCSGGG
T ss_pred --------ccccccC----CCCcCEEECCCCccCCcCcc---cc------------------CCCCEEECCCCCCCCccc
Confidence 2333332 25566666665543322211 12 336667777778887644
Q ss_pred -cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccc
Q 046888 750 -SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 750 -~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l 828 (1170)
.+..+++|+.|+|++|.+... .+......+++|+.|+|++|.++.+|.. ..+++|+.|+|++|+++.+|..+
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGG
T ss_pred hhhhccCCCCEEECCCCCCCcc------cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhh
Confidence 788899999999999998752 2233235789999999999999988654 45999999999999999999889
Q ss_pred cCCCCCCEEEecCCCCCCCCCCC---ccccceeccccccc
Q 046888 829 KQLSRLKRLDLSNCSMLQSIPEL---PPSLKWLQAGNCKR 865 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~i~~c~~ 865 (1170)
..+++|+.|+|++|+. +.+|.. .++|+.|++.+++-
T Consensus 211 ~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 211 QSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp GGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCC
T ss_pred cccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCc
Confidence 9999999999999974 466653 36788888887653
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=206.40 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=180.7
Q ss_pred CCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccc
Q 046888 589 LPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERI 664 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L 664 (1170)
++++++.|++++|.++.++. .| .+++|++|+|++|.+..++ ..+..+++|++|+|++|.+....+. +..+++|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 44689999999999998763 44 8899999999999999776 5678899999999999986654443 7888888888
Q ss_pred cccCCcccccCCCccccccc-ccccccccceeecccccccccccc-cccCCCcccEEecCCCCCchhhh-----ccccEE
Q 046888 665 NLWNCTHLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVST-SICKLKSLIWLCLNECLNLESFL-----ESLKKI 737 (1170)
Q Consensus 665 ~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~~~-----~~L~~L 737 (1170)
+|++ |.+..+|. .+..+++|++|++++|..+..++. .+.++++|+.|++++|. +..+| ..|+.|
T Consensus 142 ~L~~--------N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 142 WLRN--------NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDEL 212 (440)
T ss_dssp ECCS--------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEE
T ss_pred eCCC--------CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEE
Confidence 7766 55577765 578899999999999888887775 58889999999999883 34443 459999
Q ss_pred EccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEE
Q 046888 738 NLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLE 815 (1170)
Q Consensus 738 ~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~ 815 (1170)
+|++|.++.+ |..+..+++|+.|+|++|.+.. ++...+.++++|+.|+|++|+++.+|. .+..+++|+.|+
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeE-------EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 9999999977 6789999999999999999864 445558899999999999999999765 568899999999
Q ss_pred CcCCCCc
Q 046888 816 LRENNFE 822 (1170)
Q Consensus 816 L~~n~l~ 822 (1170)
|++|.+.
T Consensus 286 L~~Np~~ 292 (440)
T 3zyj_A 286 LHHNPWN 292 (440)
T ss_dssp CCSSCEE
T ss_pred cCCCCcc
Confidence 9999765
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.3e-18 Score=208.06 Aligned_cols=218 Identities=25% Similarity=0.343 Sum_probs=173.6
Q ss_pred CCCCeeEEEecCCCCCCCC-CCC-CCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCC-CCCCCccccc
Q 046888 589 LPEKLRYLHLHKYPLRTLP-SNF-KPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERI 664 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L 664 (1170)
+|++|++|++++|.++.++ ..| .+++|++|+|++|.+..++ ..+..+++|++|+|++|.+....+. +..+++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 4467888888888888774 444 7888888888888888776 5678888888888888886655444 6777888777
Q ss_pred cccCCcccccCCCccccccc-ccccccccceeecccccccccccc-cccCCCcccEEecCCCCCchhh-----hccccEE
Q 046888 665 NLWNCTHLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVST-SICKLKSLIWLCLNECLNLESF-----LESLKKI 737 (1170)
Q Consensus 665 ~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~~-----~~~L~~L 737 (1170)
+|++ |.+..+|. .+.++++|+.|++++|..++.+|. .+.++++|+.|++++|. +..+ ..+|+.|
T Consensus 153 ~L~~--------N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 153 WLRN--------NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEEL 223 (452)
T ss_dssp ECCS--------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEE
T ss_pred ECCC--------CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEE
Confidence 7765 45566665 578888899999988877777775 47788889999888873 3333 2458999
Q ss_pred EccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEE
Q 046888 738 NLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLE 815 (1170)
Q Consensus 738 ~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~ 815 (1170)
++++|.++.+ |..+.++++|+.|+|++|.+.. ++...+.++++|+.|+|++|+++.+|. .+..+++|+.|+
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-------IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCce-------ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 9999999977 5689999999999999999864 444448899999999999999999764 568899999999
Q ss_pred CcCCCCc
Q 046888 816 LRENNFE 822 (1170)
Q Consensus 816 L~~n~l~ 822 (1170)
|++|.+.
T Consensus 297 L~~Np~~ 303 (452)
T 3zyi_A 297 LHHNPWN 303 (452)
T ss_dssp CCSSCEE
T ss_pred ccCCCcC
Confidence 9999765
No 70
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.78 E-value=2.1e-20 Score=187.11 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=91.5
Q ss_pred CCCCccEEeccccccccCchHHHHHHHHhcC--CCcEEecC-CCCCCCcchHHHHHHhh-ccceEEEEeccCcccCCCcH
Q 046888 6 SSCNYDVFLSFRGEDTRENFTSHLYAALCGK--KIKTFIDE-DLNRGDEISPALLNAIE-GSKISVIIFSKDYASSKWCP 81 (1170)
Q Consensus 6 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~-~s~~~i~v~S~~y~~s~wcl 81 (1170)
..+.|||||||+++| ..|+.+|+++|+++ |+++|+|+ |+.+|+.|.++|.+||+ +|+++|+|+|++|++|.||.
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 468999999999999 68999999999985 69999999 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEEEEeeeCc
Q 046888 82 NELVNILKCK-NLNGQIVIPIYYHVSP 107 (1170)
Q Consensus 82 ~El~~~~~~~-~~~~~~v~pif~~v~p 107 (1170)
.|+..|+++. +.++++||||||++.+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999876 4445789999998764
No 71
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.78 E-value=4.2e-20 Score=187.69 Aligned_cols=100 Identities=22% Similarity=0.382 Sum_probs=86.7
Q ss_pred CCCCccEEeccccccccCchHHH-HHHHHhc--CCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcH
Q 046888 6 SSCNYDVFLSFRGEDTRENFTSH-LYAALCG--KKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCP 81 (1170)
Q Consensus 6 ~~~~~dvFis~~~~d~~~~f~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl 81 (1170)
..+.|||||||+++|+ .||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|++|++|.||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 4678999999999994 89985 9999998 899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEEEEeeeCc
Q 046888 82 NELVNILKCK-NLNGQIVIPIYYHVSP 107 (1170)
Q Consensus 82 ~El~~~~~~~-~~~~~~v~pif~~v~p 107 (1170)
.|+..|+.+. +.++++||||||+..|
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 9999999754 5567789999998544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.2e-19 Score=216.24 Aligned_cols=212 Identities=17% Similarity=0.213 Sum_probs=143.0
Q ss_pred CeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCC
Q 046888 592 KLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNC 669 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 669 (1170)
+|++|++++|.+..+|. .+ .+++|++|+|++|.+..++. +..+++|++|+|++|.+.. +|. .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~---~~~L~~L~L~~- 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV---GPSIETLHAAN- 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE---CTTCCEEECCS-
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC---CCCcCEEECcC-
Confidence 67777777777776653 34 67777777777777775554 6777777777777776432 221 24555555444
Q ss_pred cccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcc-cC
Q 046888 670 THLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTE-LP 748 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~-lp 748 (1170)
|.+..+|.. .+++|+.|+|++|...+..|..++++++|+.|++++| .++. .|
T Consensus 109 -------N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N------------------~l~~~~~ 161 (487)
T 3oja_A 109 -------NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN------------------EIDTVNF 161 (487)
T ss_dssp -------SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS------------------CCCEEEG
T ss_pred -------CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC------------------CCCCcCh
Confidence 444555442 4567777777777766666666666666666666554 4443 34
Q ss_pred cccc-CCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccccc
Q 046888 749 SSFE-NIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVS 827 (1170)
Q Consensus 749 ~~l~-~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 827 (1170)
..+. .+++|+.|+|++|.+.+ ++. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~-------~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYD-------VKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCE-------EEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred HHHhhhCCcccEEecCCCcccc-------ccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 4444 67788888888887653 222 3457788888888888888777777788888888888888888877
Q ss_pred ccCCCCCCEEEecCCCCC
Q 046888 828 IKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 828 l~~l~~L~~L~L~~c~~l 845 (1170)
+..+++|+.|+|++|+..
T Consensus 233 l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCTTCCEEECTTCCBC
T ss_pred hccCCCCCEEEcCCCCCc
Confidence 777888888888888765
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=203.30 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=196.8
Q ss_pred CCCceEEEccCCCCCcccccccCCCceeecC-CCcCCCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccccc
Q 046888 554 PNLRVLKFYIPEGLDMSFEEQHSDSKVQFLD-GLDYLPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIWE 630 (1170)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~ 630 (1170)
++|+.|+++++.. . .++. .+..++ +|++|++++|.++.++. .+ .+++|++|++++|.++.++.
T Consensus 52 ~~L~~L~l~~n~i------------~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRI------------T-YISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TTCCEEECTTSCC------------C-EECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred ccCcEEECCCCcC------------c-ccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 4899999987652 1 2222 455554 89999999999998854 45 88999999999999999987
Q ss_pred c-ccccccceeecCCCCCCCccCC--CCCCCCccccccccCCcccccCCCcccccc-cccccccccceeecccccccccc
Q 046888 631 G-KKKAFKLKSINLSHSQYLIRIP--DPSEAPNLERINLWNCTHLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRV 706 (1170)
Q Consensus 631 ~-~~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l 706 (1170)
. +..+++|++|+|++|.+....+ .+..+++|++|+++++..+ ..++ ..++.+++|++|++++|...+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCCCCCEEECCCCCcCccC
Confidence 6 7899999999999998664433 3788999999999886444 6664 56899999999999999988878
Q ss_pred cccccCCCcccEEecCCCCCchhh-------hccccEEEccCcCCcccCc----cccCCCCCCEEEccCCCCCCcCcCCc
Q 046888 707 STSICKLKSLIWLCLNECLNLESF-------LESLKKINLGRTTVTELPS----SFENIEGLGTLGLERSQLPHLLSGLV 775 (1170)
Q Consensus 707 p~~i~~L~~L~~L~l~~c~~l~~~-------~~~L~~L~L~~~~i~~lp~----~l~~l~~L~~L~L~~~~~~~~~~~l~ 775 (1170)
|..++++++|++|++++|.. ..+ +++|+.|++++|.++.++. .......++.++|+++.+.+. .+.
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~--~l~ 267 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE--SLF 267 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH--HHH
T ss_pred HHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc--chh
Confidence 89999999999999999853 333 4569999999999987653 234567899999999987642 122
Q ss_pred ccCccccCCCCCCCEEeCCCCCCCCCCccc-CCCCCCCEEECcCCCCccc
Q 046888 776 SLPASLLSGLFSLNWLNLNNCALTAIPEEI-GCLPSLEWLELRENNFESL 824 (1170)
Q Consensus 776 ~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l-~~l~~L~~L~L~~n~l~~l 824 (1170)
.+|.. +..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|.+..-
T Consensus 268 ~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 268 QVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 45544 788999999999999999999875 8999999999999988743
No 74
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.78 E-value=1.7e-20 Score=185.82 Aligned_cols=99 Identities=22% Similarity=0.339 Sum_probs=89.9
Q ss_pred CCCCccEEeccccccccCchHHH-HHHHHhcC--CCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcH
Q 046888 6 SSCNYDVFLSFRGEDTRENFTSH-LYAALCGK--KIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCP 81 (1170)
Q Consensus 6 ~~~~~dvFis~~~~d~~~~f~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl 81 (1170)
..+.|||||||+++|+ .|+.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhcCCcEEEEEEeeeC
Q 046888 82 NELVNILKC-KNLNGQIVIPIYYHVS 106 (1170)
Q Consensus 82 ~El~~~~~~-~~~~~~~v~pif~~v~ 106 (1170)
.|+..|+.+ .+.++++||||||+-.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i 105 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPI 105 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999864 3556778999998643
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.2e-18 Score=194.86 Aligned_cols=201 Identities=23% Similarity=0.368 Sum_probs=163.8
Q ss_pred CCCCeeEEEecCCCCCCCCCC-C-CCCcCccccCCCCCcccc-cccccccccceeecCCCCCCCccC-CC-CCCCCcccc
Q 046888 589 LPEKLRYLHLHKYPLRTLPSN-F-KPKNLIELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLIRI-PD-PSEAPNLER 663 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~-p~-~~~l~~L~~ 663 (1170)
++++|+.|++++|.++.+|.. + .+++|++|++++|.+..+ |..+..+++|++|+|++|..+..+ |. +..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 456899999999999988754 4 889999999999999987 677899999999999999844444 44 788889988
Q ss_pred ccccCCcccccCCCccccc-ccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCc
Q 046888 664 INLWNCTHLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRT 742 (1170)
Q Consensus 664 L~L~~c~~L~l~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~ 742 (1170)
|+++++ .+..+ |..+..+++|++|++++|......+..++++++|+.|++++ |
T Consensus 110 L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------n 163 (285)
T 1ozn_A 110 LHLDRC--------GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG------------------N 163 (285)
T ss_dssp EECTTS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS------------------S
T ss_pred EECCCC--------cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC------------------C
Confidence 888774 44555 55689999999999999986654445577777776666655 5
Q ss_pred CCcccCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCC
Q 046888 743 TVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENN 820 (1170)
Q Consensus 743 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~ 820 (1170)
.++.+|. .+..+++|+.|++++|.+.. +++..+..+++|+.|+|++|.++++|. .+..+++|+.|+|++|.
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAH-------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccccCHHHhcCccccCEEECCCCcccc-------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 5666665 58889999999999999864 333338889999999999999999874 58999999999999998
Q ss_pred Cc
Q 046888 821 FE 822 (1170)
Q Consensus 821 l~ 822 (1170)
+.
T Consensus 237 ~~ 238 (285)
T 1ozn_A 237 WV 238 (285)
T ss_dssp EE
T ss_pred cc
Confidence 87
No 76
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=180.53 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=90.6
Q ss_pred CCccEEeccccccc---------cCchHHHHHH-HHh-cCCCcEEecC-CCCCCCcchHHHHHHhhccceEEEEeccCcc
Q 046888 8 CNYDVFLSFRGEDT---------RENFTSHLYA-ALC-GKKIKTFIDE-DLNRGDEISPALLNAIEGSKISVIIFSKDYA 75 (1170)
Q Consensus 8 ~~~dvFis~~~~d~---------~~~f~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~ 75 (1170)
+.|||||||+++|+ +..||.++.. +|+ +.|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679998665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cCCCcHHHHHHHHHhh-hcCCcEEEEEEeeeCcc
Q 046888 76 -SSKWCPNELVNILKCK-NLNGQIVIPIYYHVSPS 108 (1170)
Q Consensus 76 -~s~wcl~El~~~~~~~-~~~~~~v~pif~~v~ps 108 (1170)
.|.||..|+..|+.+. +.++++||||+|...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999987 66678999999886543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.8e-18 Score=189.92 Aligned_cols=219 Identities=19% Similarity=0.209 Sum_probs=150.4
Q ss_pred EEecCCCCCCCCCCCCCCcCccccCCCCCcccccc-cccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccc
Q 046888 596 LHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLN 673 (1170)
Q Consensus 596 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~ 673 (1170)
++..+..+..+|..+ +.+|++|++++|.++.++. .+..+++|++|+|++|.+....+. +..+++|++|+|++
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~----- 85 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG----- 85 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-----
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-----
Confidence 344445555666544 2467777777777776654 566677777777777765544442 56666666666555
Q ss_pred cCCCcccccc-cccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcc--cCcc
Q 046888 674 LCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTE--LPSS 750 (1170)
Q Consensus 674 l~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~--lp~~ 750 (1170)
|.+..++ ..+..+++|++|++++|......+..++++++|++|++++ |.++. +|..
T Consensus 86 ---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------n~l~~~~l~~~ 144 (276)
T 2z62_A 86 ---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH------------------NLIQSFKLPEY 144 (276)
T ss_dssp ---CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS------------------SCCCCCCCCGG
T ss_pred ---CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC------------------CccceecCchh
Confidence 3334444 4567778888888877765544444566666665555554 45554 5778
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCC----EEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLN----WLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV 826 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~----~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~ 826 (1170)
+..+++|+.|++++|.+.. ++...+..+.+|+ .|++++|.++.++.......+|+.|+|++|+++.+|.
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQS-------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp GGGCTTCCEEECCSSCCCE-------ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred hccCCCCCEEECCCCCCCc-------CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH
Confidence 8889999999999998764 3333344455555 8999999999988777777799999999999998876
Q ss_pred c-ccCCCCCCEEEecCCCCCCCC
Q 046888 827 S-IKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 827 ~-l~~l~~L~~L~L~~c~~l~~l 848 (1170)
. +..+++|+.|+|++|+.....
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCCT
T ss_pred hHhcccccccEEEccCCcccccC
Confidence 5 588999999999999865443
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=2e-18 Score=199.07 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=143.8
Q ss_pred eEEEecCCCCCCCCCCCCCCcCccccCCCCCccccccc-ccccccceeecCCCCCCCccCCC--CCCCCccccccccCCc
Q 046888 594 RYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEG-KKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNCT 670 (1170)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~ 670 (1170)
+.++.+++.++++|..+ +.++++|+|++|+|+.+|.+ +.++++|++|+|++|.+++.+|. |.++++|.++.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~- 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA- 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE-
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC-
Confidence 46788889999999876 57899999999999999964 79999999999999998877775 677888776544433
Q ss_pred ccccCCCcccccc-cccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc
Q 046888 671 HLNLCDTAIEEVP-SSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS 749 (1170)
Q Consensus 671 ~L~l~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~ 749 (1170)
|.+..+| ..+..+++|++|++++|......+..+....++..|++.++..+..++..
T Consensus 90 ------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~---------------- 147 (350)
T 4ay9_X 90 ------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN---------------- 147 (350)
T ss_dssp ------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----------------
T ss_pred ------CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc----------------
Confidence 4558885 45799999999999998755444444556666777777665444333211
Q ss_pred cccCC-CCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCC-CCCCCCCc-ccCCCCCCCEEECcCCCCccccc
Q 046888 750 SFENI-EGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNN-CALTAIPE-EIGCLPSLEWLELRENNFESLPV 826 (1170)
Q Consensus 750 ~l~~l-~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~-~~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~ 826 (1170)
.+..+ ..|+.|+|++|.+. .++...+ ...+|+.|++.+ |.++.+|. .+..+++|+.|+|++|+|+.+|.
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~-------~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQ-------EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCC-------EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred chhhcchhhhhhcccccccc-------CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 22222 23455555555543 2333312 233455555543 34445543 34555566666666666665553
Q ss_pred cccCCCCCCEEEecCCCCCCCCCC
Q 046888 827 SIKQLSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 827 ~l~~l~~L~~L~L~~c~~l~~lp~ 850 (1170)
. .+.+|+.|.+.+|..++.+|.
T Consensus 220 ~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 220 Y--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp S--SCTTCCEEECTTCTTCCCCCC
T ss_pred h--hhccchHhhhccCCCcCcCCC
Confidence 2 245555555555555555554
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.8e-19 Score=212.62 Aligned_cols=235 Identities=17% Similarity=0.170 Sum_probs=186.9
Q ss_pred CCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccccc
Q 046888 552 NMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEG 631 (1170)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~ 631 (1170)
.+++|+.|+++++.. ....+..+..++ +|++|++++|.+..++....+++|++|+|++|.+..+|..
T Consensus 32 ~~~~L~~L~Ls~n~l------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPL------------SQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp TGGGCCEEECCSSCC------------CCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC
T ss_pred cCCCccEEEeeCCcC------------CCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC
Confidence 445899999987752 112233455554 8999999999998776645899999999999999988743
Q ss_pred ccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCccccc-ccccccccccceeecccccccccccccc
Q 046888 632 KKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEV-PSSVECLTNLEYLYINRCKRLKRVSTSI 710 (1170)
Q Consensus 632 ~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i 710 (1170)
++|++|+|++|.+....+. .+++|+.|+|++ |.+..+ |..++++++|+.|+|++|...+..|..+
T Consensus 99 ----~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~--------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSCS--RGQGKKNIYLAN--------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEEC--CCSSCEEEECCS--------SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ----CCcCEEECcCCcCCCCCcc--ccCCCCEEECCC--------CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 8999999999997665543 456677666655 555665 5578999999999999998887777776
Q ss_pred c-CCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCC
Q 046888 711 C-KLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLN 789 (1170)
Q Consensus 711 ~-~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~ 789 (1170)
. .+++|+.|++++| .++.+|. ...+++|+.|+|++|.+. .+|+. +..+++|+
T Consensus 165 ~~~l~~L~~L~Ls~N------------------~l~~~~~-~~~l~~L~~L~Ls~N~l~-------~~~~~-~~~l~~L~ 217 (487)
T 3oja_A 165 AASSDTLEHLNLQYN------------------FIYDVKG-QVVFAKLKTLDLSSNKLA-------FMGPE-FQSAAGVT 217 (487)
T ss_dssp GGGTTTCCEEECTTS------------------CCCEEEC-CCCCTTCCEEECCSSCCC-------EECGG-GGGGTTCS
T ss_pred hhhCCcccEEecCCC------------------ccccccc-cccCCCCCEEECCCCCCC-------CCCHh-HcCCCCcc
Confidence 5 6777777776664 4554433 335899999999999886 45555 77889999
Q ss_pred EEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc--cccccccCCCCCCEEEec
Q 046888 790 WLNLNNCALTAIPEEIGCLPSLEWLELRENNFE--SLPVSIKQLSRLKRLDLS 840 (1170)
Q Consensus 790 ~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~ 840 (1170)
.|+|++|.++.+|..+..+++|+.|+|++|.+. .+|.++..++.|+.|+++
T Consensus 218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999999999999999999999999998 778888899999888886
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.5e-17 Score=186.25 Aligned_cols=194 Identities=23% Similarity=0.240 Sum_probs=125.4
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
+|+.++++++.++.+|..+. ++|++|+|++|.+..++ ..+..+++|++|+|++|.+.. ++..
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--------------- 73 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--------------- 73 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC---------------
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC---------------
Confidence 67778888888887776553 57777777777777654 456777777777777776432 2222
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccC-c
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELP-S 749 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp-~ 749 (1170)
+.+++|+.|++++|. +..+|..+..+++|+.|+++ +|.++.+| .
T Consensus 74 ----------------~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~------------------~N~l~~l~~~ 118 (290)
T 1p9a_G 74 ----------------GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS------------------FNRLTSLPLG 118 (290)
T ss_dssp ----------------SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC------------------SSCCCCCCSS
T ss_pred ----------------CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECC------------------CCcCcccCHH
Confidence 344455555555543 22444444444444333333 23444444 3
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCCEEECcCCCCccccccc
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~~L~L~~n~l~~lp~~l 828 (1170)
.+..+++|+.|+|++|.+. .+|...+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+++.+|..+
T Consensus 119 ~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELK-------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp TTTTCTTCCEEECTTSCCC-------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred HHcCCCCCCEEECCCCCCC-------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 4666677777777777665 34444467777888888888888877654 466788888888888888888777
Q ss_pred cCCCCCCEEEecCCCC
Q 046888 829 KQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~~ 844 (1170)
..+++|+.|+|++|+.
T Consensus 192 ~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTCCCSEEECCSCCB
T ss_pred cccccCCeEEeCCCCc
Confidence 7778888888888874
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=4.9e-17 Score=181.97 Aligned_cols=201 Identities=23% Similarity=0.243 Sum_probs=151.8
Q ss_pred hhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcc
Q 046888 549 AFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVV 626 (1170)
Q Consensus 549 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~ 626 (1170)
.+.++++|+.+++.++.. ..++.+ ++++|+.|++++|.+..++. .+ .+++|++|+|++|.+.
T Consensus 5 ~~~~l~~l~~l~~~~~~l-------------~~ip~~---~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNL-------------TALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp EEECSTTCCEEECTTSCC-------------SSCCSC---CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred cccccCCccEEECCCCCC-------------CcCCCC---CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC
Confidence 467899999999976532 122332 34689999999999998753 34 8899999999999999
Q ss_pred cccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccc
Q 046888 627 QIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRV 706 (1170)
Q Consensus 627 ~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~l 706 (1170)
.++.. ..+++|++|+|++|.+ ..+|..+..+++|++|++++|......
T Consensus 69 ~~~~~-~~l~~L~~L~Ls~N~l-------------------------------~~l~~~~~~l~~L~~L~l~~N~l~~l~ 116 (290)
T 1p9a_G 69 KLQVD-GTLPVLGTLDLSHNQL-------------------------------QSLPLLGQTLPALTVLDVSFNRLTSLP 116 (290)
T ss_dssp EEECC-SCCTTCCEEECCSSCC-------------------------------SSCCCCTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCC-CCCCcCCEEECCCCcC-------------------------------CcCchhhccCCCCCEEECCCCcCcccC
Confidence 98765 7889999999998864 334444556666777777776544433
Q ss_pred cccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCC
Q 046888 707 STSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGL 785 (1170)
Q Consensus 707 p~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l 785 (1170)
|..+.++++|+.|++++ |.++.+|. .+..+++|+.|+|++|.+. .+|...+..+
T Consensus 117 ~~~~~~l~~L~~L~L~~------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~l~~~~~~~l 171 (290)
T 1p9a_G 117 LGALRGLGELQELYLKG------------------NELKTLPPGLLTPTPKLEKLSLANNNLT-------ELPAGLLNGL 171 (290)
T ss_dssp SSTTTTCTTCCEEECTT------------------SCCCCCCTTTTTTCTTCCEEECTTSCCS-------CCCTTTTTTC
T ss_pred HHHHcCCCCCCEEECCC------------------CCCCccChhhcccccCCCEEECCCCcCC-------ccCHHHhcCc
Confidence 45566666665555544 44555544 3567888899999888876 4666667889
Q ss_pred CCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc
Q 046888 786 FSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~ 822 (1170)
++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.
T Consensus 172 ~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 9999999999999999999999999999999999876
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=6.9e-17 Score=179.02 Aligned_cols=198 Identities=26% Similarity=0.350 Sum_probs=133.3
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccc-cccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
+++.++++++.++.+|..+. .+|++|+|++|.+..++. .+..+++|++|+|++|.+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------------- 73 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---------------------- 73 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC----------------------
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc----------------------
Confidence 46677888888877776543 567777777777776664 466677777777776653
Q ss_pred ccccCCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc
Q 046888 671 HLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS 749 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~ 749 (1170)
..+|.. +..+++|++|++++|......+..+.++++|+.|++++ |.++.+|.
T Consensus 74 ---------~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------n~l~~~~~ 126 (270)
T 2o6q_A 74 ---------QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR------------------NQLKSLPP 126 (270)
T ss_dssp ---------SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS------------------SCCCCCCT
T ss_pred ---------CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC------------------CccCeeCH
Confidence 333332 34555666666666553332233344555554444443 34444433
Q ss_pred -cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCcccccc
Q 046888 750 -SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFESLPVS 827 (1170)
Q Consensus 750 -~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~~ 827 (1170)
.+..+++|+.|+|++|.+. .+|...+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+++.+|..
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQ-------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HHhCcCcCCCEEECCCCcCC-------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 4667788888888888765 3555557788889999999888888765 477889999999999988888754
Q ss_pred -ccCCCCCCEEEecCCCCCC
Q 046888 828 -IKQLSRLKRLDLSNCSMLQ 846 (1170)
Q Consensus 828 -l~~l~~L~~L~L~~c~~l~ 846 (1170)
+..+++|+.|+|++|+...
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccccCCCEEEecCCCeeC
Confidence 7788999999999987543
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1e-16 Score=177.66 Aligned_cols=179 Identities=26% Similarity=0.374 Sum_probs=129.8
Q ss_pred CCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccccccc-cccccceeecCCCCCCCccCCCCCCCCcccccc
Q 046888 589 LPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIWEGK-KKAFKLKSINLSHSQYLIRIPDPSEAPNLERIN 665 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~ 665 (1170)
+|.+|+.|++++|.+..+|. .+ .+++|++|+|++|.+..++... ..+++|++|+|++|.+....+.
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 103 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG----------- 103 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT-----------
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh-----------
Confidence 45689999999999999986 34 8999999999999999998764 7899999999999875332222
Q ss_pred ccCCcccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCc
Q 046888 666 LWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVT 745 (1170)
Q Consensus 666 L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~ 745 (1170)
.+..+++|++|++++|......+..++.+++|++|++++ |.++
T Consensus 104 -------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~------------------n~l~ 146 (270)
T 2o6q_A 104 -------------------VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY------------------NELQ 146 (270)
T ss_dssp -------------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS------------------SCCC
T ss_pred -------------------HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC------------------CcCC
Confidence 234455566666665554443344445555555554443 3444
Q ss_pred ccCcc-ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCc
Q 046888 746 ELPSS-FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 746 ~lp~~-l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~ 822 (1170)
.+|.. +..+++|+.|+|++|.+. .++...+.++++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLK-------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHhHccCCcccceeEecCCcCc-------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 45443 667788888888888765 3455457788899999999999988765 4778999999999999765
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.2e-17 Score=179.46 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=122.5
Q ss_pred CCCCCCCCCCCcCccccCCCCCcccccc-cccccccceeecCCCCCCCccCCC--CCCCCccccccccCCcccccCCCcc
Q 046888 603 LRTLPSNFKPKNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNCTHLNLCDTAI 679 (1170)
Q Consensus 603 l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~L~l~~n~i 679 (1170)
++.+|. -+.+|++|++++|+++.++. .+..+++|++|+|++|..++.++. +.++++|++|++++|.. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-------l 93 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-------L 93 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-------C
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-------e
Confidence 777777 34578888888888887775 567788888888888863333332 55666666666655322 3
Q ss_pred ccccc-ccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCc-CCcccCc-cccCCCC
Q 046888 680 EEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRT-TVTELPS-SFENIEG 756 (1170)
Q Consensus 680 ~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~-~i~~lp~-~l~~l~~ 756 (1170)
..+|. .+.++++|++|++++|... .+|. ++.+++|+. |+.|++++| .++.+|. .+..+++
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~---------------L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDI---------------FFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCS---------------EEEEEEESCTTCCEECTTTTTTTBS
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCc-cccc-ccccccccc---------------ccEEECCCCcchhhcCcccccchhc
Confidence 55553 4566677777777766533 3554 444444430 224444444 5555544 3566666
Q ss_pred CC-EEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCC-CCCCCC-cccCCC-CCCCEEECcCCCCccccccccCCC
Q 046888 757 LG-TLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNC-ALTAIP-EEIGCL-PSLEWLELRENNFESLPVSIKQLS 832 (1170)
Q Consensus 757 L~-~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~-~l~~ip-~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~ 832 (1170)
|+ .|++++|.+. .+|...+.. ++|+.|+|++| .++.+| ..+..+ ++|+.|+|++|+++.+|.. .++
T Consensus 157 L~~~L~l~~n~l~-------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~ 226 (239)
T 2xwt_C 157 ETLTLKLYNNGFT-------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLE 226 (239)
T ss_dssp SEEEEECCSCCCC-------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCT
T ss_pred ceeEEEcCCCCCc-------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hhc
Confidence 66 6666666654 344433433 56666666666 366653 345556 6666666666666666643 566
Q ss_pred CCCEEEecCCC
Q 046888 833 RLKRLDLSNCS 843 (1170)
Q Consensus 833 ~L~~L~L~~c~ 843 (1170)
+|+.|++++|.
T Consensus 227 ~L~~L~l~~~~ 237 (239)
T 2xwt_C 227 HLKELIARNTW 237 (239)
T ss_dssp TCSEEECTTC-
T ss_pred cCceeeccCcc
Confidence 66666666654
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=6.3e-19 Score=199.90 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=121.1
Q ss_pred CCcCccccCCCCCcccccccccccccceeecCCCCCCC-ccCCC-CC-------CCCccccccccCCcccccCCCccc-c
Q 046888 612 PKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYL-IRIPD-PS-------EAPNLERINLWNCTHLNLCDTAIE-E 681 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l-~~~p~-~~-------~l~~L~~L~L~~c~~L~l~~n~i~-~ 681 (1170)
..+|++|++++|.+ .+|..+... |+.|+|++|.+. ..+|. +. ++++|++|+|++ |.+. .
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--------n~l~~~ 110 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN--------LEVTGT 110 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEE--------EBCBSC
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccC--------Ccccch
Confidence 45677777777777 666655443 777777776642 22222 11 233333333333 2233 3
Q ss_pred ccccc--ccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccC-ccccCCCCCC
Q 046888 682 VPSSV--ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELP-SSFENIEGLG 758 (1170)
Q Consensus 682 lp~~i--~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp-~~l~~l~~L~ 758 (1170)
+|..+ +.+++|++|++++|...+. |..++.+.. ..++.|++|++++|.++.++ ..+..+++|+
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------hhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 44443 4555555555555543333 433333300 00145666666666666555 5666777777
Q ss_pred EEEccCCCCCCcCcCCcccCcc-ccCCCCCCCEEeCCCCCCCCCC---c-ccCCCCCCCEEECcCCCCcccc--ccccCC
Q 046888 759 TLGLERSQLPHLLSGLVSLPAS-LLSGLFSLNWLNLNNCALTAIP---E-EIGCLPSLEWLELRENNFESLP--VSIKQL 831 (1170)
Q Consensus 759 ~L~L~~~~~~~~~~~l~~lp~~-~l~~l~~L~~L~L~~~~l~~ip---~-~l~~l~~L~~L~L~~n~l~~lp--~~l~~l 831 (1170)
.|+|++|.+.+.. .++.. .+..+++|+.|+|++|.++.++ . .+..+++|+.|+|++|+++..+ ..+..+
T Consensus 177 ~L~Ls~N~l~~~~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 177 TLDLSDNPELGER----GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp EEECCSCTTCHHH----HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred EEECCCCCcCcch----HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777654310 11111 1256667777777777776432 2 2245667777777777776543 344556
Q ss_pred CCCCEEEecCCCCCCCCCC-CccccceeccccccccCCC
Q 046888 832 SRLKRLDLSNCSMLQSIPE-LPPSLKWLQAGNCKRLQSL 869 (1170)
Q Consensus 832 ~~L~~L~L~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l 869 (1170)
++|+.|+|++|... .+|. ++++|+.|+++++ .++.+
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N-~l~~~ 289 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYN-RLDRN 289 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCCSEEEEEECCSS-CCCSC
T ss_pred CCCCEEECCCCccC-hhhhhccCCceEEECCCC-CCCCC
Confidence 67777777777643 5554 3356777776665 34444
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1.2e-19 Score=218.01 Aligned_cols=279 Identities=18% Similarity=0.142 Sum_probs=142.4
Q ss_pred hcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCC-CCC-C-CCC----cCccccCCC
Q 046888 550 FTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTL-PSN-F-KPK----NLIELNLPF 622 (1170)
Q Consensus 550 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~-~-~~~----~L~~L~L~~ 622 (1170)
|..+++|+.|+++++...+.. ...++..+...+ +|++|++++|.+... +.. + .+. +|++|+|++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~--------~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEAR--------CKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHH--------HHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred HhhcCCccEEEccCCCCCHHH--------HHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccC
Confidence 667777777777765421000 001122223333 677777777776531 111 1 222 577777777
Q ss_pred CCcc-----cccccccccccceeecCCCCCCCccCCC------CCCCCccccccccCCcccccCCCcccccccccccccc
Q 046888 623 SKVV-----QIWEGKKKAFKLKSINLSHSQYLIRIPD------PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTN 691 (1170)
Q Consensus 623 ~~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p~------~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~ 691 (1170)
|.+. .++..+..+++|++|+|++|.+....+. ....++|++|++++|. +.......++..+..+++
T Consensus 95 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~ 171 (461)
T 1z7x_W 95 CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS---LSAASCEPLASVLRAKPD 171 (461)
T ss_dssp SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC---CBGGGHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC---CCHHHHHHHHHHHhhCCC
Confidence 7776 3466677777777777777765332221 2234566777666652 122222234455555666
Q ss_pred cceeeccccccccccccccc-----CCCcccEEecCCCCCch----hh------hccccEEEccCcCCccc------Ccc
Q 046888 692 LEYLYINRCKRLKRVSTSIC-----KLKSLIWLCLNECLNLE----SF------LESLKKINLGRTTVTEL------PSS 750 (1170)
Q Consensus 692 L~~L~L~~~~~l~~lp~~i~-----~L~~L~~L~l~~c~~l~----~~------~~~L~~L~L~~~~i~~l------p~~ 750 (1170)
|++|++++|......+..+. .+++|+.|++++|..-. .+ .+.|++|++++|.++.. +..
T Consensus 172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence 66666666654332222221 24466666666653221 11 23466666666665532 112
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccC-CCCCCCEEECcCCCCcc-
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIG-CLPSLEWLELRENNFES- 823 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~-~l~~L~~L~L~~n~l~~- 823 (1170)
+..+++|+.|++++|.+.... ...++.. +..+++|+.|+|++|.+.+ +...+. ..++|+.|+|++|.++.
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~--~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKG--CGDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHH--HHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred hcCCCCceEEECcCCCCCHHH--HHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 234566666666666554310 0012222 4445666666666666543 112111 23466666666666552
Q ss_pred ----ccccccCCCCCCEEEecCCC
Q 046888 824 ----LPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 824 ----lp~~l~~l~~L~~L~L~~c~ 843 (1170)
+|..+..+++|+.|+|++|.
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHHhhCCCccEEEccCCc
Confidence 34455556666666666664
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=4.4e-17 Score=184.20 Aligned_cols=188 Identities=20% Similarity=0.299 Sum_probs=123.8
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
+|+.|+++++.+..+|....+++|++|++++|.+..++. +..+++|++|+|++|.+
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l----------------------- 97 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL----------------------- 97 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-----------------------
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-----------------------
Confidence 566777777777766643366677777777777766665 66667777777776653
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSF 751 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l 751 (1170)
..+| .+..+++|++|++++|... .+|. +..+++|+.|++++ |.++.++. +
T Consensus 98 --------~~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~------------------n~l~~~~~-l 147 (308)
T 1h6u_A 98 --------KNVS-AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDL------------------NQITNISP-L 147 (308)
T ss_dssp --------SCCG-GGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEECCS------------------SCCCCCGG-G
T ss_pred --------CCch-hhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEECCC------------------CccCcCcc-c
Confidence 2222 2445556666666665432 2332 44555555444444 33343333 5
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCC
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQL 831 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l 831 (1170)
..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+++++. +..+++|+.|+|++|+++.++ .+..+
T Consensus 148 ~~l~~L~~L~l~~n~l~~-------~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l 216 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSD-------LTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANT 216 (308)
T ss_dssp GGCTTCCEEECCSSCCCC-------CGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTC
T ss_pred cCCCCccEEEccCCcCCC-------Chh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCC
Confidence 667777777777777653 333 6677888888888888887765 777888888888888888877 47888
Q ss_pred CCCCEEEecCCCC
Q 046888 832 SRLKRLDLSNCSM 844 (1170)
Q Consensus 832 ~~L~~L~L~~c~~ 844 (1170)
++|+.|+|++|+.
T Consensus 217 ~~L~~L~l~~N~i 229 (308)
T 1h6u_A 217 SNLFIVTLTNQTI 229 (308)
T ss_dssp TTCCEEEEEEEEE
T ss_pred CCCCEEEccCCee
Confidence 8888888888874
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=3.6e-17 Score=184.93 Aligned_cols=207 Identities=20% Similarity=0.284 Sum_probs=155.6
Q ss_pred cCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccc
Q 046888 614 NLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLE 693 (1170)
Q Consensus 614 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~ 693 (1170)
++..+.+..+.+.... ....+++|+.|++++|.+ ..+|.+..+++|+.|+|++ |.+..++. +..+++|+
T Consensus 20 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~--------n~i~~~~~-~~~l~~L~ 88 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKD--------NQITDLAP-LKNLTKIT 88 (308)
T ss_dssp HHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCS--------SCCCCCGG-GTTCCSCC
T ss_pred HHHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccC--------CcCCCChh-HccCCCCC
Confidence 3444445555554432 234577788888888764 3456666666776666665 34467777 89999999
Q ss_pred eeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcC
Q 046888 694 YLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSG 773 (1170)
Q Consensus 694 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~ 773 (1170)
+|++++|.. ..+| .+..+++|+.|++++| .++.+|. +..+++|+.|++++|.+..
T Consensus 89 ~L~L~~n~l-~~~~-~~~~l~~L~~L~l~~n------------------~l~~~~~-l~~l~~L~~L~l~~n~l~~---- 143 (308)
T 1h6u_A 89 ELELSGNPL-KNVS-AIAGLQSIKTLDLTST------------------QITDVTP-LAGLSNLQVLYLDLNQITN---- 143 (308)
T ss_dssp EEECCSCCC-SCCG-GGTTCTTCCEEECTTS------------------CCCCCGG-GTTCTTCCEEECCSSCCCC----
T ss_pred EEEccCCcC-CCch-hhcCCCCCCEEECCCC------------------CCCCchh-hcCCCCCCEEECCCCccCc----
Confidence 999999974 4444 4667777776666654 5555554 8899999999999999864
Q ss_pred CcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCCCCCCC--
Q 046888 774 LVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQSIPEL-- 851 (1170)
Q Consensus 774 l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l-- 851 (1170)
++. +..+++|+.|+|++|.+++++. +..+++|+.|+|++|+++.+|. +..+++|+.|+|++|+.. .++.+
T Consensus 144 ---~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~l~~ 215 (308)
T 1h6u_A 144 ---ISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS-DVSPLAN 215 (308)
T ss_dssp ---CGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC-BCGGGTT
T ss_pred ---Ccc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC-ccccccC
Confidence 333 7789999999999999999877 8999999999999999999885 889999999999999854 44432
Q ss_pred ccccceecccccc
Q 046888 852 PPSLKWLQAGNCK 864 (1170)
Q Consensus 852 ~~~L~~L~i~~c~ 864 (1170)
.++|+.|++.+++
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 3678888888775
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.3e-17 Score=178.07 Aligned_cols=213 Identities=20% Similarity=0.220 Sum_probs=145.4
Q ss_pred cccCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCccccccc-ccccccccce
Q 046888 617 ELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPS-SVECLTNLEY 694 (1170)
Q Consensus 617 ~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~~ 694 (1170)
.+++..++++.+|. +. .+|++|+|++|.+....+. +..+++|+.|+++++..+ ..+|. .+.++++|++
T Consensus 15 ~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-------~~i~~~~f~~l~~L~~ 84 (239)
T 2xwt_C 15 DFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-------QQLESHSFYNLSKVTH 84 (239)
T ss_dssp TTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-------CEECTTTEESCTTCCE
T ss_pred cceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-------ceeCHhHcCCCcCCcE
Confidence 34444444677776 33 3788888888886555553 777888888877765333 66765 5778888888
Q ss_pred eeccccccccccc-ccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCC---EEEccCC-CCCC
Q 046888 695 LYINRCKRLKRVS-TSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLG---TLGLERS-QLPH 769 (1170)
Q Consensus 695 L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~---~L~L~~~-~~~~ 769 (1170)
|++++|..+..+| ..+.++++|+.|++++ |.++.+|. +..+++|+ .|++++| .+.
T Consensus 85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~------------------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~- 144 (239)
T 2xwt_C 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFN------------------TGLKMFPD-LTKVYSTDIFFILEITDNPYMT- 144 (239)
T ss_dssp EEEEEETTCCEECTTSEECCTTCCEEEEEE------------------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCC-
T ss_pred EECCCCCCeeEcCHHHhCCCCCCCEEeCCC------------------CCCccccc-cccccccccccEEECCCCcchh-
Confidence 8888733344444 4566666665555544 45566665 66777777 8888888 654
Q ss_pred cCcCCcccCccccCCCCCCC-EEeCCCCCCCCCCcccCCCCCCCEEECcCC-CCcccc-ccccCC-CCCCEEEecCCCCC
Q 046888 770 LLSGLVSLPASLLSGLFSLN-WLNLNNCALTAIPEEIGCLPSLEWLELREN-NFESLP-VSIKQL-SRLKRLDLSNCSML 845 (1170)
Q Consensus 770 ~~~~l~~lp~~~l~~l~~L~-~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n-~l~~lp-~~l~~l-~~L~~L~L~~c~~l 845 (1170)
.++...+.++++|+ .|++++|.++.+|......++|+.|+|++| .++.+| ..+..+ ++|+.|+|++|+..
T Consensus 145 ------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 145 ------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp ------EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred ------hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 45555577888888 888888888887766555578888888888 488775 456777 88888888888754
Q ss_pred CCCCC-Cccccceecccccccc
Q 046888 846 QSIPE-LPPSLKWLQAGNCKRL 866 (1170)
Q Consensus 846 ~~lp~-l~~~L~~L~i~~c~~L 866 (1170)
.+|. .+++|+.|.+.++..|
T Consensus 219 -~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 219 -ALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp -CCCCTTCTTCSEEECTTC---
T ss_pred -cCChhHhccCceeeccCccCC
Confidence 4443 4677888888777543
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=5.9e-19 Score=211.86 Aligned_cols=303 Identities=21% Similarity=0.211 Sum_probs=195.9
Q ss_pred hhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCC-----CCCCC-CCCcCccccCC
Q 046888 548 RAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRT-----LPSNF-KPKNLIELNLP 621 (1170)
Q Consensus 548 ~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~ 621 (1170)
..+..+++|+.|+++++...+.. ...+...+.....+|++|++++|.+.. +|..+ .+++|++|+++
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~--------~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 121 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVG--------VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHH--------HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC
T ss_pred HHHHhCCCcCEEeCCCCcCChHH--------HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC
Confidence 46778899999999876521000 001122222222379999999998873 45555 78899999999
Q ss_pred CCCcccc-cc----c-ccccccceeecCCCCCCCccC----CC-CCCCCccccccccCCcccccCCCcccccccccc-cc
Q 046888 622 FSKVVQI-WE----G-KKKAFKLKSINLSHSQYLIRI----PD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVE-CL 689 (1170)
Q Consensus 622 ~~~i~~l-~~----~-~~~l~~L~~L~Ls~~~~l~~~----p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~-~l 689 (1170)
+|.+... +. . ....++|++|+|++|.+.... +. +..+++|++|+++++. + .......+...+. .+
T Consensus 122 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i--~~~~~~~l~~~l~~~~ 198 (461)
T 1z7x_W 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-I--NEAGVRVLCQGLKDSP 198 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-C--HHHHHHHHHHHHHHSC
T ss_pred CCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-c--chHHHHHHHHHHhcCC
Confidence 9988632 11 2 223567999999999865432 22 4556788888877753 1 1111111222221 35
Q ss_pred cccceeeccccccccc----ccccccCCCcccEEecCCCCCchh-----h-------hccccEEEccCcCCcc-----cC
Q 046888 690 TNLEYLYINRCKRLKR----VSTSICKLKSLIWLCLNECLNLES-----F-------LESLKKINLGRTTVTE-----LP 748 (1170)
Q Consensus 690 ~~L~~L~L~~~~~l~~----lp~~i~~L~~L~~L~l~~c~~l~~-----~-------~~~L~~L~L~~~~i~~-----lp 748 (1170)
++|++|++++|..... ++..+..+++|+.|++++|. +.. + ...|+.|++++|.++. ++
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 6888899988875542 56677788888999988884 222 1 3468888998888885 67
Q ss_pred ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcCCCCcc
Q 046888 749 SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRENNFES 823 (1170)
Q Consensus 749 ~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~n~l~~ 823 (1170)
..+.++++|+.|++++|.+.... ...+........++|+.|+|++|.++. ++..+..+++|+.|+|++|.++.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 77778888999999888764311 011222212344688888888888875 45667778888888888888774
Q ss_pred c-cccc----cC-CCCCCEEEecCCCCCC----CCCCC---ccccceecccccc
Q 046888 824 L-PVSI----KQ-LSRLKRLDLSNCSMLQ----SIPEL---PPSLKWLQAGNCK 864 (1170)
Q Consensus 824 l-p~~l----~~-l~~L~~L~L~~c~~l~----~lp~l---~~~L~~L~i~~c~ 864 (1170)
. +..+ .. .++|+.|+|++|.... .+|.. .++|++|++.+|.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3 2222 22 6788888888887543 44432 3678888887763
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=4.1e-17 Score=181.04 Aligned_cols=149 Identities=28% Similarity=0.373 Sum_probs=73.6
Q ss_pred cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-cccCCCCCCEEEccC
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS-SFENIEGLGTLGLER 764 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~ 764 (1170)
++.+++|++|++++|...+..+..++++++|++|++++| .++.+|. .+..+++|+.|++++
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------------------~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN------------------QLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS------------------CCCCCCTTTTTTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC------------------cCCccCHHHhccCCCCCEEECCC
Confidence 445555555555555433333333444444444444332 2333332 244555555555555
Q ss_pred CCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCCEEECcCCCCccccc-cccCCCCCCEEEecCC
Q 046888 765 SQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPV-SIKQLSRLKRLDLSNC 842 (1170)
Q Consensus 765 ~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c 842 (1170)
|.+. .++...+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|
T Consensus 143 n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 143 NQLQ-------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp SCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccC-------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 5543 23333345555666666666665554432 3555666666666666655443 2455666666666666
Q ss_pred CCCCCCCCCccccceeccccc
Q 046888 843 SMLQSIPELPPSLKWLQAGNC 863 (1170)
Q Consensus 843 ~~l~~lp~l~~~L~~L~i~~c 863 (1170)
+.....| +|+.|.+..+
T Consensus 216 ~~~~~~~----~l~~l~~~~n 232 (272)
T 3rfs_A 216 PWDCTCP----GIRYLSEWIN 232 (272)
T ss_dssp CBCCCTT----TTHHHHHHHH
T ss_pred CccccCc----HHHHHHHHHH
Confidence 5443332 3444444443
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.3e-16 Score=176.97 Aligned_cols=225 Identities=20% Similarity=0.235 Sum_probs=168.8
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
++..+++..+.+..+.....+++|+.|++++|.+..++ ++..+++|++|+|++|.+. .++.+..+++|++|+|+++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n-- 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGN-- 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTS--
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCC--
Confidence 34445566666655544447788999999999988764 5788999999999999854 4566778888888877764
Q ss_pred cccCCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-
Q 046888 672 LNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS- 749 (1170)
Q Consensus 672 L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~- 749 (1170)
.+..+|.. ++.+++|++|++++|...+..+..++++++|++|++++| .++.+|.
T Consensus 96 ------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------------------~l~~~~~~ 151 (272)
T 3rfs_A 96 ------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN------------------QLQSLPKG 151 (272)
T ss_dssp ------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS------------------CCCCCCTT
T ss_pred ------ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC------------------ccCccCHH
Confidence 44666654 688999999999998866555555677777777766654 4555554
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCccccccc
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~~l 828 (1170)
.+..+++|+.|++++|.+. .++...+.++++|+.|+|++|.+++++. .+..+++|+.|+|++|.+.
T Consensus 152 ~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 218 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQ-------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 218 (272)
T ss_dssp TTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------
T ss_pred HhccCccCCEEECCCCCcC-------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------
Confidence 4678899999999999876 3555557888999999999999998654 4688999999999999765
Q ss_pred cCCCCCCEEEecCCCCCCCCCCCccccce
Q 046888 829 KQLSRLKRLDLSNCSMLQSIPELPPSLKW 857 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~~l~~lp~l~~~L~~ 857 (1170)
..+++|+.|+++.|...+.+|....++..
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 34667888999999888888765544433
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=3.7e-16 Score=173.75 Aligned_cols=200 Identities=19% Similarity=0.239 Sum_probs=155.9
Q ss_pred CCCCeeEEEecCCCCCCCCC-CC-CCCcCccccCCCCCcccccc-cccccccceeecCCCCCCCccCCC-CCCCCccccc
Q 046888 589 LPEKLRYLHLHKYPLRTLPS-NF-KPKNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERI 664 (1170)
Q Consensus 589 l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L 664 (1170)
+|++|++|++++|.++.++. .+ .+++|++|++++|.+..++. .+..+++|++|+|++|.+....+. +.++++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45689999999999998875 44 78999999999999998875 688999999999999997766655 7888999988
Q ss_pred cccCCcccccCCCccccccc-ccccccccceeecccccccc-cccccccCCCcccEEecCCCCCchhhhccccEEEccCc
Q 046888 665 NLWNCTHLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLK-RVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRT 742 (1170)
Q Consensus 665 ~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~ 742 (1170)
++.++ .+..++. .++.+++|++|++++|.... .+|..++++++|+.|++++|
T Consensus 106 ~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N------------------ 159 (276)
T 2z62_A 106 VAVET--------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN------------------ 159 (276)
T ss_dssp ECTTS--------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS------------------
T ss_pred ECCCC--------CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC------------------
Confidence 88764 4456655 68999999999999998655 36888888888888877765
Q ss_pred CCcccC-ccccCCCCCC----EEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCCEEEC
Q 046888 743 TVTELP-SSFENIEGLG----TLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLEWLEL 816 (1170)
Q Consensus 743 ~i~~lp-~~l~~l~~L~----~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~~L~L 816 (1170)
.++.++ ..+..+++|+ .|++++|.+.. ++...+ ...+|+.|+|++|.++.+|.. +..+++|+.|+|
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-------~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-------IQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCE-------ECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccc-------cCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 334333 2344444444 78888888763 444323 334799999999999987765 578999999999
Q ss_pred cCCCCc
Q 046888 817 RENNFE 822 (1170)
Q Consensus 817 ~~n~l~ 822 (1170)
++|.+.
T Consensus 232 ~~N~~~ 237 (276)
T 2z62_A 232 HTNPWD 237 (276)
T ss_dssp CSSCBC
T ss_pred cCCccc
Confidence 999876
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=182.34 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=99.4
Q ss_pred ccccccceeecccccccccccccccCCCcccEEecCCCCCchh--h--------hccccEEEccCcCCcccCc----ccc
Q 046888 687 ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLES--F--------LESLKKINLGRTTVTELPS----SFE 752 (1170)
Q Consensus 687 ~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~--~--------~~~L~~L~L~~~~i~~lp~----~l~ 752 (1170)
..+++|++|+|++|......|..++++++|++|++++|..... + .+.|++|++++|.++.+|. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 3455666666666655444445555666666666666542211 1 1236666666666765544 246
Q ss_pred CCCCCCEEEccCCCCCCcCcCCcccCccccCC---CCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccccccc
Q 046888 753 NIEGLGTLGLERSQLPHLLSGLVSLPASLLSG---LFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIK 829 (1170)
Q Consensus 753 ~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~---l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~ 829 (1170)
.+++|++|+|++|.+... .|.. +.. +++|+.|+|++|.++.+|..+. ++|+.|+|++|+++.+|. +.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~------~p~~-~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~ 291 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRAT------VNPS-APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PD 291 (310)
T ss_dssp HTCCCSSEECTTSCCCCC------CCSC-CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TT
T ss_pred cCCCCCEEECCCCCCCcc------chhh-HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hh
Confidence 778888888888887652 2322 333 3688888888888888887764 788888998888888874 67
Q ss_pred CCCCCCEEEecCCCCC
Q 046888 830 QLSRLKRLDLSNCSML 845 (1170)
Q Consensus 830 ~l~~L~~L~L~~c~~l 845 (1170)
.+++|+.|+|++|+..
T Consensus 292 ~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCSCEECSSTTTS
T ss_pred hCCCccEEECcCCCCC
Confidence 8888888888888753
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=2.4e-15 Score=173.26 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=176.2
Q ss_pred CCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhh---cCcCH
Q 046888 179 MSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIE---NGVGL 255 (1170)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~---~~~~~ 255 (1170)
.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+. ... .. .....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~-~~~~~~~~~~ 74 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRE-LYAERGHITR 74 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHH-HHHTTTCBCH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eec-ccccccCCCH
Confidence 45566788999999999999998643 689999999999999999999875 2 55654 222 11 01133
Q ss_pred HHHHHHHHHHHhc----------------CcccCCCCChh---HHHHHHhcC-CCeEEEEeCCCChH--------H-HHH
Q 046888 256 VHLHKQVVSLLLG----------------ERLETGGPNIP---AYALERLRR-TKVFMVLDDVSEFE--------Q-LKY 306 (1170)
Q Consensus 256 ~~l~~~ll~~l~~----------------~~~~~~~~~l~---~~l~~~L~~-kk~LlVLDdv~~~~--------~-~~~ 306 (1170)
..+...+...+.. .........+. ..+.+.... ++++|||||++... + +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 4444444433321 00000011222 222222322 49999999997632 2 333
Q ss_pred HHcccCCCCCCcEEEEEeCChhHHHHh----C----C--CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHH
Q 046888 307 LVGWLDGFCPGSRIVVTTRDKQVLRKQ----G----V--KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKA 376 (1170)
Q Consensus 307 l~~~~~~~~~gsrIIiTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i 376 (1170)
+...... .++.++|+|++...+.... . . .....+++.+|+.+|+.+++....-..... ...+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3322221 2577899999876543321 1 0 112479999999999999998754221111 113456889
Q ss_pred HHHhCCChhHHHHHHHHhcC-CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC---CHHHHHHHhhcccccCCCCHHHH
Q 046888 377 VRYAEGNPLALEVLGSSLQQ-KSKQDWENVLDNLKQISGASRIYKLLRISYEEL---TFEEKSIFLDIACFFKGEGKDRV 452 (1170)
Q Consensus 377 ~~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l 452 (1170)
++.++|+|+++..++..+.. .+...+. ..+. ..+...+.-.+..+ ++.++.++..+|+ .......+
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l 301 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL-----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLI 301 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH-----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH-----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHH
Confidence 99999999999999876432 2332221 1111 11111122222223 7889999999998 23455555
Q ss_pred HHHHhhC--CCC---HHHHHHHHHhcCCcEEeCCeEEe-hHHHHHHHH
Q 046888 453 LMLLHDR--QYN---VTQALSVLIDKSLIIEHNNRLHM-HELLQEMGQ 494 (1170)
Q Consensus 453 ~~l~~~~--~~~---~~~~l~~L~~~sLi~~~~~~~~m-Hdll~~~~~ 494 (1170)
...+... +.. ...+++.|.+.+||...+++|.+ |++++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 5554221 333 35679999999999988788876 788887653
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=6.6e-18 Score=197.68 Aligned_cols=231 Identities=21% Similarity=0.224 Sum_probs=121.8
Q ss_pred CCCcCccccCCCCCccc-----ccccccccccceeecCCCCCC---CccCCC--------CCCCCccccccccCCccccc
Q 046888 611 KPKNLIELNLPFSKVVQ-----IWEGKKKAFKLKSINLSHSQY---LIRIPD--------PSEAPNLERINLWNCTHLNL 674 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~~---l~~~p~--------~~~l~~L~~L~L~~c~~L~l 674 (1170)
.+++|++|+|++|.+.. ++..+..+++|++|+|++|.+ ...+|. +..+++|++|+|+++. +
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l 106 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA---F 106 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC---C
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc---C
Confidence 34556666666665542 333455566666666666532 112221 1344455555444431 1
Q ss_pred CCCcccccccccccccccceeeccccccccc----ccccccCC---------CcccEEecCCCCCc-hhh---------h
Q 046888 675 CDTAIEEVPSSVECLTNLEYLYINRCKRLKR----VSTSICKL---------KSLIWLCLNECLNL-ESF---------L 731 (1170)
Q Consensus 675 ~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~L---------~~L~~L~l~~c~~l-~~~---------~ 731 (1170)
.......+|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|..- ..+ .
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 1111123555566666666666666654322 22223233 56666666665422 111 1
Q ss_pred ccccEEEccCcCCc------ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----
Q 046888 732 ESLKKINLGRTTVT------ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA----- 800 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~------~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~----- 800 (1170)
+.|+.|++++|.++ -+|..+..+++|+.|+|++|.+... +...+|.. +..+++|+.|+|++|.++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~--g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL--GSSALAIA-LKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH--HHHHHHHH-GGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH--HHHHHHHH-HccCCCcCEEECCCCCCchhhHHH
Confidence 24666666666665 1233566677777777777765310 00133332 5566677777777777664
Q ss_pred CCccc--CCCCCCCEEECcCCCCcc-----ccccc-cCCCCCCEEEecCCCCCCC
Q 046888 801 IPEEI--GCLPSLEWLELRENNFES-----LPVSI-KQLSRLKRLDLSNCSMLQS 847 (1170)
Q Consensus 801 ip~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~c~~l~~ 847 (1170)
+|..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+|++|+....
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 34555 336777777777777665 66665 4567777777777765443
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.1e-17 Score=189.46 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=30.4
Q ss_pred cCCCCCCCEEeCCCCC-CCC-CCcccCCCCCCCEEECcCCC-Cc-cccccccCCCCCCEEEecCC
Q 046888 782 LSGLFSLNWLNLNNCA-LTA-IPEEIGCLPSLEWLELRENN-FE-SLPVSIKQLSRLKRLDLSNC 842 (1170)
Q Consensus 782 l~~l~~L~~L~L~~~~-l~~-ip~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~c 842 (1170)
+..+++|+.|+|++|. +++ .+..+..+++|+.|+|++|. +. .....+..+++|+.|+|++|
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3445555555555555 332 34445555555556555553 21 11113455556666666655
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=6e-17 Score=185.63 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=120.3
Q ss_pred CCeeEEEecCCCCCCCCCCC-CC--CcCccccCCCCCcccccccccccccceeecCCCCCCCcc-CCC-CCCCCcccccc
Q 046888 591 EKLRYLHLHKYPLRTLPSNF-KP--KNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIR-IPD-PSEAPNLERIN 665 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~-~~--~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-~~~l~~L~~L~ 665 (1170)
..++.|+++++.+. |..+ .+ .+++.|++++|.+...+..+..+++|++|+|++|.+... +|. +..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34677777777654 2222 23 567777777777776666666677777777777764432 333 45666666666
Q ss_pred ccCCcccccCCCcccccccccccccccceeecccccccc--cccccccCCCcccEEecCCCCCchh--h------hc-cc
Q 046888 666 LWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLK--RVSTSICKLKSLIWLCLNECLNLES--F------LE-SL 734 (1170)
Q Consensus 666 L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~--~------~~-~L 734 (1170)
|++|..- ...|..++.+++|++|++++|..+. .++..+.++++|++|++++|..+.. + .+ +|
T Consensus 125 L~~~~l~-------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 125 LEGLRLS-------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CTTCBCC-------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CcCcccC-------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 6665311 2344555666666666666664333 2455555666666666666633321 1 12 56
Q ss_pred cEEEccCcC--C--cccCccccCCCCCCEEEccCCC-CCCcCcCCcccCccccCCCCCCCEEeCCCCC-CCC-CCcccCC
Q 046888 735 KKINLGRTT--V--TELPSSFENIEGLGTLGLERSQ-LPHLLSGLVSLPASLLSGLFSLNWLNLNNCA-LTA-IPEEIGC 807 (1170)
Q Consensus 735 ~~L~L~~~~--i--~~lp~~l~~l~~L~~L~L~~~~-~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~-l~~-ip~~l~~ 807 (1170)
+.|++++|. + ..+|..+.++++|+.|++++|. +.. ..+.. +..+++|+.|+|++|. +.. ....+..
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------DCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG------GGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH------HHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 666666663 3 2455555666666666666666 322 11121 4555666666666663 221 1123555
Q ss_pred CCCCCEEECcCC
Q 046888 808 LPSLEWLELREN 819 (1170)
Q Consensus 808 l~~L~~L~L~~n 819 (1170)
+++|+.|+|++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 666666666666
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=2.2e-17 Score=193.29 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=187.3
Q ss_pred CcCccccCCCCCcccccccccccccceeecCCCCCCCccCC-----CCCCCCccccccccCCcccccCCC---ccccccc
Q 046888 613 KNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIP-----DPSEAPNLERINLWNCTHLNLCDT---AIEEVPS 684 (1170)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~~~~l~~L~~L~L~~c~~L~l~~n---~i~~lp~ 684 (1170)
..|+...+....+..++..+..+++|+.|+|++|.+....+ .+..+++|++|+|++|..-.+.+. .+..+..
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 34555566666777888888999999999999998765422 267889999999988632111110 1122233
Q ss_pred ccccccccceeecccccccc----cccccccCCCcccEEecCCCCCch----hhh---------------ccccEEEccC
Q 046888 685 SVECLTNLEYLYINRCKRLK----RVSTSICKLKSLIWLCLNECLNLE----SFL---------------ESLKKINLGR 741 (1170)
Q Consensus 685 ~i~~l~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~c~~l~----~~~---------------~~L~~L~L~~ 741 (1170)
.+..+++|++|+|++|.... .+|..+..+++|++|++++|..-. .++ +.|+.|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 34789999999999998766 478888999999999999996421 222 6899999999
Q ss_pred cCCc--ccC---ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCC-----CCCcccCCCCCC
Q 046888 742 TTVT--ELP---SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALT-----AIPEEIGCLPSL 811 (1170)
Q Consensus 742 ~~i~--~lp---~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~-----~ip~~l~~l~~L 811 (1170)
|.++ .+| ..+..+++|+.|+|++|.+... +...+.+..+..+++|+.|+|++|.++ .+|..+..+++|
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH--HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh--HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 9997 445 4677899999999999987621 001122212778899999999999995 478889999999
Q ss_pred CEEECcCCCCcc-----ccccccC--CCCCCEEEecCCCCCC----CCCCC----ccccceecccccc
Q 046888 812 EWLELRENNFES-----LPVSIKQ--LSRLKRLDLSNCSMLQ----SIPEL----PPSLKWLQAGNCK 864 (1170)
Q Consensus 812 ~~L~L~~n~l~~-----lp~~l~~--l~~L~~L~L~~c~~l~----~lp~l----~~~L~~L~i~~c~ 864 (1170)
+.|+|++|.++. +|..+.. +++|+.|+|++|.... .+|.. .++|+.|++.+|+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 999999999984 4667744 9999999999998655 36642 3778888887764
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=9.8e-15 Score=168.57 Aligned_cols=291 Identities=18% Similarity=0.162 Sum_probs=173.4
Q ss_pred CCCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhh--cCcCHH
Q 046888 179 MSSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIE--NGVGLV 256 (1170)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~~~ 256 (1170)
.++..++.|+||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ... .. ......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRK-FEERNYISYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGG-GTTCSCCCHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chh-hccccCCCHH
Confidence 445567889999999999999 743 699999999999999999999887532 45654 222 10 012223
Q ss_pred HHHHHHHHHHh-------------cCc----ccC-----C----CCChhHHHHHHhcC---CCeEEEEeCCCChH-----
Q 046888 257 HLHKQVVSLLL-------------GER----LET-----G----GPNIPAYALERLRR---TKVFMVLDDVSEFE----- 302 (1170)
Q Consensus 257 ~l~~~ll~~l~-------------~~~----~~~-----~----~~~l~~~l~~~L~~---kk~LlVLDdv~~~~----- 302 (1170)
.....+...+. ..- ... . .......+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 33333333221 100 000 0 01112223333432 48999999996532
Q ss_pred H-HHHHHcccCCCCCCcEEEEEeCChhHHHHh----C----CC-C-cceEeecCCCHhHHHHHHHHHHhccCCCChhHHH
Q 046888 303 Q-LKYLVGWLDGFCPGSRIVVTTRDKQVLRKQ----G----VK-D-EHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTV 371 (1170)
Q Consensus 303 ~-~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~----~~-~-~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~ 371 (1170)
+ +..+..... ..++.++|+|+|........ . .. . ...+++.+|+.+|+.+++...+-......+..
T Consensus 156 ~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--
T ss_pred hHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--
Confidence 1 222221111 12467899999987543321 1 11 1 25799999999999999987542212222221
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhcC-CCHHHHHHH-HHHHhhcCChhhHHHHHH-HHHh--cCCHHHHHHHhhcccccCC
Q 046888 372 LSKKAVRYAEGNPLALEVLGSSLQQ-KSKQDWENV-LDNLKQISGASRIYKLLR-ISYE--ELTFEEKSIFLDIACFFKG 446 (1170)
Q Consensus 372 ~~~~i~~~~~GlPLAl~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~f~~~ 446 (1170)
..+++.++|+|+++..++..+.. .+...|... .+... ..+...+. +.++ .|++.++.++..+|+ . .
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~ 303 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G 303 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B
T ss_pred --HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C
Confidence 68899999999999999887643 333333221 11110 11222222 1111 678899999999998 2 2
Q ss_pred CCHHHHHHHHh-hCC--C---CHHHHHHHHHhcCCcEEeCCeEEe-hHHHHHHH
Q 046888 447 EGKDRVLMLLH-DRQ--Y---NVTQALSVLIDKSLIIEHNNRLHM-HELLQEMG 493 (1170)
Q Consensus 447 ~~~~~l~~l~~-~~~--~---~~~~~l~~L~~~sLi~~~~~~~~m-Hdll~~~~ 493 (1170)
....+...+. ..| . ....+++.|++.+||...++.|++ |++++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 5555554331 122 2 245779999999999988777874 78888764
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=1.6e-15 Score=184.04 Aligned_cols=189 Identities=20% Similarity=0.306 Sum_probs=117.1
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
+|+.|++++|.++.+|..+ +++|++|+|++|.|+.+| ..+++|++|+|++|.+.. +|.+.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls---- 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVD---- 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECC----
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECC----
Confidence 5777777777777777755 367888888888888777 446778888888876544 554322 44444333
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSF 751 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l 751 (1170)
+|.+..+|. .+++|+.|+|++|... .+|. .++ +|+.|++++|.++.+|. +
T Consensus 129 ----~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~------------------~L~~L~Ls~N~L~~lp~-l 178 (571)
T 3cvr_A 129 ----NNQLTMLPE---LPALLEYINADNNQLT-MLPE---LPT------------------SLEVLSVRNNQLTFLPE-L 178 (571)
T ss_dssp ----SSCCSCCCC---CCTTCCEEECCSSCCS-CCCC---CCT------------------TCCEEECCSSCCSCCCC-C
T ss_pred ----CCcCCCCCC---cCccccEEeCCCCccC-cCCC---cCC------------------CcCEEECCCCCCCCcch-h
Confidence 355566666 5677777777776533 2443 223 34455555566666666 4
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCc---cccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccccc
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPA---SLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFE-SLPVS 827 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~---~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~ 827 (1170)
. ++|+.|+|++|.+.. +|. ......+.|+.|+|++|.|+.+|..+..+++|+.|+|++|.++ .+|..
T Consensus 179 ~--~~L~~L~Ls~N~L~~-------lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLES-------LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp C--TTCCEEECCSSCCSS-------CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred h--CCCCEEECcCCCCCc-------hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 4 777777777777653 332 1111222337777777777777777777777777777777776 44555
Q ss_pred ccC
Q 046888 828 IKQ 830 (1170)
Q Consensus 828 l~~ 830 (1170)
+..
T Consensus 250 l~~ 252 (571)
T 3cvr_A 250 LSQ 252 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=176.72 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=114.4
Q ss_pred CeeEEEecCCCCCC-CCCC---CCCCcCccccCCCCCccccc-----ccccccccceeecCCCCCCCccCCC-CCCCCcc
Q 046888 592 KLRYLHLHKYPLRT-LPSN---FKPKNLIELNLPFSKVVQIW-----EGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNL 661 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~-lp~~---~~~~~L~~L~L~~~~i~~l~-----~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L 661 (1170)
+|++|++++|.+.. .|.. ..+.+|++|+|++|.+.... ..+..+++|++|+|++|.+....|. ++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 46666666666553 2333 23555666666666555311 1223455555666655554333332 4444455
Q ss_pred ccccccCCcccccCCCccccccc--ccccccccceeeccccccccccccc----ccCCCcccEEecCCCCCchhhhcccc
Q 046888 662 ERINLWNCTHLNLCDTAIEEVPS--SVECLTNLEYLYINRCKRLKRVSTS----ICKLKSLIWLCLNECLNLESFLESLK 735 (1170)
Q Consensus 662 ~~L~L~~c~~L~l~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~c~~l~~~~~~L~ 735 (1170)
++|+|+++.-. ....++. .++.+++|++|+|++|.. ..+|.. ++.+ ..|+
T Consensus 172 ~~L~Ls~N~l~-----~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l------------------~~L~ 227 (310)
T 4glp_A 172 TSLDLSDNPGL-----GERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG------------------VQPH 227 (310)
T ss_dssp CEEECCSCTTC-----HHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT------------------CCCS
T ss_pred CEEECCCCCCc-----cchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC------------------CCCC
Confidence 44444443211 0000111 123444555555554432 111110 1222 3466
Q ss_pred EEEccCcCCccc-CccccCC---CCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCC
Q 046888 736 KINLGRTTVTEL-PSSFENI---EGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSL 811 (1170)
Q Consensus 736 ~L~L~~~~i~~l-p~~l~~l---~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L 811 (1170)
+|++++|.++.+ |..+..+ ++|++|+|++|.+. .+|.. + .++|+.|+|++|+++++|. +..+++|
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-------~lp~~-~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L 296 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-------QVPKG-L--PAKLRVLDLSSNRLNRAPQ-PDELPEV 296 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-------SCCSC-C--CSCCSCEECCSCCCCSCCC-TTSCCCC
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-------chhhh-h--cCCCCEEECCCCcCCCCch-hhhCCCc
Confidence 777777888866 7777766 69999999999987 35554 2 2799999999999999876 7889999
Q ss_pred CEEECcCCCCc
Q 046888 812 EWLELRENNFE 822 (1170)
Q Consensus 812 ~~L~L~~n~l~ 822 (1170)
+.|+|++|.++
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 99999999886
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=5.4e-15 Score=161.79 Aligned_cols=91 Identities=31% Similarity=0.445 Sum_probs=67.6
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCccccc-c
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFESLPV-S 827 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~-~ 827 (1170)
.+..+++|+.|+|++|.+. .++...+.++++|+.|+|++|+++.+|. .+..+++|+.|+|++|+++.+|. .
T Consensus 102 ~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLK-------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp TTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred HhcccCCCCEEEcCCCcCC-------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 3566677777777777665 3444446777888888888888888765 57788888888888888887764 5
Q ss_pred ccCCCCCCEEEecCCCCCCC
Q 046888 828 IKQLSRLKRLDLSNCSMLQS 847 (1170)
Q Consensus 828 l~~l~~L~~L~L~~c~~l~~ 847 (1170)
+..+++|+.|+|++|+....
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTT
T ss_pred HhCCCCCCEEEeeCCceeCC
Confidence 77888888888888875444
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=1.9e-14 Score=157.44 Aligned_cols=176 Identities=23% Similarity=0.276 Sum_probs=115.2
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccc-cccccccceeecCCCCCCCccCCCCCCCCccccccccCCc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWE-GKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCT 670 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 670 (1170)
..+.++++++.++.+|..+. .+|+.|+|++|.+..++. .+..+++|++|+|++|.+....|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------- 76 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA----------------- 76 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----------------
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-----------------
Confidence 35567777777777776543 466666666666665543 35566666666666665432222
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCcc
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSS 750 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~ 750 (1170)
..+..+++|++|+|++|......+..+..+++|++|++++ |.++.+|..
T Consensus 77 -------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------------------N~l~~~~~~ 125 (251)
T 3m19_A 77 -------------GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG------------------NQLKSLPSG 125 (251)
T ss_dssp -------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS------------------SCCCCCCTT
T ss_pred -------------hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC------------------CcCCCcChh
Confidence 2345566666666666654433334445555555444443 455555543
Q ss_pred -ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCcc
Q 046888 751 -FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFES 823 (1170)
Q Consensus 751 -l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~~ 823 (1170)
+..+++|+.|+|++|.+. .++...+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+..
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQ-------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HhccCCcccEEECcCCcCC-------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 577888888888888775 3555457888899999999999988764 67889999999999998864
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=5e-15 Score=165.79 Aligned_cols=190 Identities=22% Similarity=0.321 Sum_probs=136.5
Q ss_pred CcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCccccccccccccccc
Q 046888 613 KNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNL 692 (1170)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L 692 (1170)
.++..+.+..+.+..+. ....+++|+.|++++|.+ ..++.+..+++|+.|+|++ |.+..++. +..+++|
T Consensus 24 ~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~--------n~l~~~~~-l~~l~~L 92 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNG--------NKLTDIKP-LANLKNL 92 (291)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCS--------SCCCCCGG-GTTCTTC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccC--------CccCCCcc-cccCCCC
Confidence 34455556555555432 234567777777777763 3445555666666665554 34456665 7788888
Q ss_pred ceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCc
Q 046888 693 EYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLS 772 (1170)
Q Consensus 693 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 772 (1170)
++|++++|.. ..+|. ++.+++|+.|++++| .++.+ ..+..+++|+.|++++|.+..
T Consensus 93 ~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~n------------------~i~~~-~~l~~l~~L~~L~l~~n~l~~--- 148 (291)
T 1h6t_A 93 GWLFLDENKV-KDLSS-LKDLKKLKSLSLEHN------------------GISDI-NGLVHLPQLESLYLGNNKITD--- 148 (291)
T ss_dssp CEEECCSSCC-CCGGG-GTTCTTCCEEECTTS------------------CCCCC-GGGGGCTTCCEEECCSSCCCC---
T ss_pred CEEECCCCcC-CCChh-hccCCCCCEEECCCC------------------cCCCC-hhhcCCCCCCEEEccCCcCCc---
Confidence 8888888763 33443 666666666666554 44444 357788999999999998764
Q ss_pred CCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCC
Q 046888 773 GLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 773 ~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 845 (1170)
++ .+..+++|+.|+|++|.+++++. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|+..
T Consensus 149 ----~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 149 ----IT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ----CG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEE
T ss_pred ----ch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCccc
Confidence 32 27888999999999999999876 899999999999999999998 4899999999999999743
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=4.6e-15 Score=182.13 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=129.5
Q ss_pred CCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccc
Q 046888 612 PKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTN 691 (1170)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~ 691 (1170)
+.++..+.+..+.+..+.. ...|.+|+.|+|++|.+ ..+|.+..+++|+.|+|+++ .+..+|+ +..+++
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N--------~l~~~~~-l~~l~~ 88 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN--------KLTDIKP-LTNLKN 88 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTS--------CCCCCGG-GGGCTT
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCC--------CCCCChh-hccCCC
Confidence 3445555666665554432 35566777777777663 34455556666666655543 3355555 777788
Q ss_pred cceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcC
Q 046888 692 LEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLL 771 (1170)
Q Consensus 692 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~ 771 (1170)
|+.|+|++|.. ..+| .+..+++|+.|+|++| .+..+ ..+..+++|+.|+|++|.+..
T Consensus 89 L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N------------------~l~~l-~~l~~l~~L~~L~Ls~N~l~~-- 145 (605)
T 1m9s_A 89 LGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHN------------------GISDI-NGLVHLPQLESLYLGNNKITD-- 145 (605)
T ss_dssp CCEEECCSSCC-CCCT-TSTTCTTCCEEECTTS------------------CCCCC-GGGGGCTTCSEEECCSSCCCC--
T ss_pred CCEEECcCCCC-CCCh-hhccCCCCCEEEecCC------------------CCCCC-ccccCCCccCEEECCCCccCC--
Confidence 88888887753 3333 4556666666655554 44443 346778888888888887764
Q ss_pred cCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCCC
Q 046888 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSMLQ 846 (1170)
Q Consensus 772 ~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 846 (1170)
++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|+...
T Consensus 146 -----l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 146 -----IT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----CG--GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred -----ch--hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 22 27778888888888888888765 888888888888888888876 58888888888888887543
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=7.2e-15 Score=169.28 Aligned_cols=223 Identities=22% Similarity=0.215 Sum_probs=164.5
Q ss_pred ccccCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCccccccc-ccccccccc
Q 046888 616 IELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPS-SVECLTNLE 693 (1170)
Q Consensus 616 ~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~ 693 (1170)
++++.++++++.+|..+ .++|++|+|++|++....+. |.++++|++|+|+++..+ +.+|. .+.++++|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-------~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-------EVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-------CEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-------CccChhHhhcchhhh
Confidence 56778888999999876 36899999999986543333 788888888888775444 55654 467788877
Q ss_pred eeecccccccccc-cccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-cccCCCCCCEEEccCCCCCCcC
Q 046888 694 YLYINRCKRLKRV-STSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLL 771 (1170)
Q Consensus 694 ~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~ 771 (1170)
.+.+.++..+..+ |..+..+++|++|+++ +|.++.+|. .+....++..|++.++....
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~------------------~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-- 142 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLIS------------------NTGIKHLPDVHKIHSLQKVLLDIQDNINIH-- 142 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEE------------------EECCSSCCCCTTCCBSSCEEEEEESCTTCC--
T ss_pred hhhcccCCcccccCchhhhhcccccccccc------------------ccccccCCchhhcccchhhhhhhccccccc--
Confidence 6555444444444 4556667766666554 456665554 34566678888887654322
Q ss_pred cCCcccCccccCCCC-CCCEEeCCCCCCCCCCcccCCCCCCCEEECcC-CCCccccc-cccCCCCCCEEEecCCCCCCCC
Q 046888 772 SGLVSLPASLLSGLF-SLNWLNLNNCALTAIPEEIGCLPSLEWLELRE-NNFESLPV-SIKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 772 ~~l~~lp~~~l~~l~-~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~-n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l 848 (1170)
.++...+..+. .|+.|+|++|+|+.+|.......+|+.|++++ |.++.+|. .+..+++|+.|+|++|+ ++.+
T Consensus 143 ----~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~l 217 (350)
T 4ay9_X 143 ----TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL 217 (350)
T ss_dssp ----EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCC
T ss_pred ----cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCcc
Confidence 45555466654 68999999999999998888888999999985 68889985 46899999999999997 5666
Q ss_pred CC-CccccceeccccccccCCCCCC
Q 046888 849 PE-LPPSLKWLQAGNCKRLQSLPEI 872 (1170)
Q Consensus 849 p~-l~~~L~~L~i~~c~~L~~l~~~ 872 (1170)
|. .+.+|+.|.+.+|.+++.+|.+
T Consensus 218 p~~~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 218 PSYGLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CSSSCTTCCEEECTTCTTCCCCCCT
T ss_pred ChhhhccchHhhhccCCCcCcCCCc
Confidence 64 6789999999999999988754
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3.3e-16 Score=191.15 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=123.4
Q ss_pred Ccccccccccccccccceeeccccc-------------ccccccccccCCCcccEEe-cCCCC------------Cchhh
Q 046888 677 TAIEEVPSSVECLTNLEYLYINRCK-------------RLKRVSTSICKLKSLIWLC-LNECL------------NLESF 730 (1170)
Q Consensus 677 n~i~~lp~~i~~l~~L~~L~L~~~~-------------~l~~lp~~i~~L~~L~~L~-l~~c~------------~l~~~ 730 (1170)
|.++.+|..|+++++|+.|++++|. ..+..|..++++++|+.|+ ++.+. .+..+
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l 438 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc
Confidence 4445555555555556555554443 2334455555566666655 22210 12222
Q ss_pred -hccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCC
Q 046888 731 -LESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLP 809 (1170)
Q Consensus 731 -~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~ 809 (1170)
+..|+.|++++|.++.+|. +..+++|+.|+|++|.+. .+|.. ++++++|+.|+|++|.++.+| .++.++
T Consensus 439 ~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-------~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~ 508 (567)
T 1dce_A 439 EYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-------ALPPA-LAALRCLEVLQASDNALENVD-GVANLP 508 (567)
T ss_dssp HHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-------CCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred CccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-------ccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence 2358999999999999997 999999999999999876 46665 889999999999999999998 899999
Q ss_pred CCCEEECcCCCCccc--cccccCCCCCCEEEecCCCCCCCCC
Q 046888 810 SLEWLELRENNFESL--PVSIKQLSRLKRLDLSNCSMLQSIP 849 (1170)
Q Consensus 810 ~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~c~~l~~lp 849 (1170)
+|+.|+|++|+|+.+ |..+..+++|+.|+|++|+..+..|
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 999999999999988 8999999999999999998544433
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.1e-16 Score=195.38 Aligned_cols=195 Identities=14% Similarity=0.161 Sum_probs=137.6
Q ss_pred CCCcCccccCCCCCcccccccccccccceeecCCCCCC-------------CccCCC-CCCCCcccccc-ccC-----Cc
Q 046888 611 KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQY-------------LIRIPD-PSEAPNLERIN-LWN-----CT 670 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~-------------l~~~p~-~~~l~~L~~L~-L~~-----c~ 670 (1170)
.+++|+.|+|++|.++.+|..++.+++|+.|++++|.. .+..|. ++.+++|+.|+ +.. +.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 57789999999999999999999999999999977642 112221 23334444443 111 11
Q ss_pred ccccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCcc
Q 046888 671 HLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSS 750 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~ 750 (1170)
.+.+.+|.+..+|. ..|+.|+|++|.. ..+|. +++++ .|+.|+|++|.++.+|..
T Consensus 427 ~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l-~~lp~-~~~l~------------------~L~~L~Ls~N~l~~lp~~ 481 (567)
T 1dce_A 427 SKFLLENSVLKMEY-----ADVRVLHLAHKDL-TVLCH-LEQLL------------------LVTHLDLSHNRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHHHHHH-----TTCSEEECTTSCC-SSCCC-GGGGT------------------TCCEEECCSSCCCCCCGG
T ss_pred hhhhhcccccccCc-----cCceEEEecCCCC-CCCcC-ccccc------------------cCcEeecCcccccccchh
Confidence 12222222232222 1244444444432 22333 33333 366666777888899999
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC--CcccCCCCCCCEEECcCCCCccccccc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI--PEEIGCLPSLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i--p~~l~~l~~L~~L~L~~n~l~~lp~~l 828 (1170)
++.+++|+.|+|++|.+.+ +| . ++++++|+.|+|++|.++.+ |..++.+++|+.|+|++|+++.+|..+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-------lp-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-------VD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-------CG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred hhcCCCCCEEECCCCCCCC-------Cc-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999999873 55 3 89999999999999999997 899999999999999999999887543
Q ss_pred ----cCCCCCCEEEe
Q 046888 829 ----KQLSRLKRLDL 839 (1170)
Q Consensus 829 ----~~l~~L~~L~L 839 (1170)
..+++|+.|++
T Consensus 553 ~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 553 ERLAEMLPSVSSILT 567 (567)
T ss_dssp THHHHHCTTCSEEEC
T ss_pred HHHHHHCcccCccCC
Confidence 34889999875
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=2.3e-16 Score=182.77 Aligned_cols=219 Identities=15% Similarity=0.115 Sum_probs=106.1
Q ss_pred cCccccCCCCCccccc-----ccccccc-cceeecCCCCCCCccCCC-CCCC-----CccccccccCCcccccCCCcccc
Q 046888 614 NLIELNLPFSKVVQIW-----EGKKKAF-KLKSINLSHSQYLIRIPD-PSEA-----PNLERINLWNCTHLNLCDTAIEE 681 (1170)
Q Consensus 614 ~L~~L~L~~~~i~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p~-~~~l-----~~L~~L~L~~c~~L~l~~n~i~~ 681 (1170)
+|++|+|++|.+...+ ..+..++ +|++|+|++|.+....+. +..+ ++|++|+|++| .+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--------~l~~ 94 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN--------FLSY 94 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS--------CGGG
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC--------cCCh
Confidence 3555555555555443 3344455 566666666654333222 2111 44444444443 2222
Q ss_pred cc-c----ccccc-cccceeecccccccccccccc----cC-CCcccEEecCCCCCch----h-------hhccccEEEc
Q 046888 682 VP-S----SVECL-TNLEYLYINRCKRLKRVSTSI----CK-LKSLIWLCLNECLNLE----S-------FLESLKKINL 739 (1170)
Q Consensus 682 lp-~----~i~~l-~~L~~L~L~~~~~l~~lp~~i----~~-L~~L~~L~l~~c~~l~----~-------~~~~L~~L~L 739 (1170)
.+ . .+..+ ++|++|++++|......+..+ .. .++|++|++++|.--. . .+..|+.|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 21 1 13333 566666666665433333222 22 2456666666553210 1 1234566666
Q ss_pred cCcCCcccCc-----cccCC-CCCCEEEccCCCCCCcCcCCcccCccccCC-CCCCCEEeCCCCCCCCCC-----cccCC
Q 046888 740 GRTTVTELPS-----SFENI-EGLGTLGLERSQLPHLLSGLVSLPASLLSG-LFSLNWLNLNNCALTAIP-----EEIGC 807 (1170)
Q Consensus 740 ~~~~i~~lp~-----~l~~l-~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~-l~~L~~L~L~~~~l~~ip-----~~l~~ 807 (1170)
++|.++..+. .+..+ ++|+.|+|++|.+.... ...++.. +.. .++|+.|+|++|.+++.+ ..+..
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--YAELAYI-FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHH-HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--HHHHHHH-HhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 6666553332 23344 36666666666654310 1113322 222 346666777666666532 23455
Q ss_pred CCCCCEEECcCCCCc--------cccccccCCCCCCEEEecCCC
Q 046888 808 LPSLEWLELRENNFE--------SLPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 808 l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~c~ 843 (1170)
+++|+.|+|++|.+. .++..+..+++|+.|+|++|+
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 666677777666522 233445566666666666665
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=8.8e-15 Score=163.75 Aligned_cols=170 Identities=20% Similarity=0.277 Sum_probs=110.9
Q ss_pred CeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 592 KLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
+|+.|++++|.+..+|....+++|++|++++|.+..++. +..+++|++|+|++|.
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~------------------------ 101 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK------------------------ 101 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------------------------
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc------------------------
Confidence 455555555555555443344455555555555444443 4444444444444443
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSF 751 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l 751 (1170)
+..+|. ++.+++|++|++++|.... ++ .+..+++|+.|++++ |.++.+ ..+
T Consensus 102 -------l~~~~~-l~~l~~L~~L~L~~n~i~~-~~-~l~~l~~L~~L~l~~------------------n~l~~~-~~l 152 (291)
T 1h6t_A 102 -------VKDLSS-LKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGN------------------NKITDI-TVL 152 (291)
T ss_dssp -------CCCGGG-GTTCTTCCEEECTTSCCCC-CG-GGGGCTTCCEEECCS------------------SCCCCC-GGG
T ss_pred -------CCCChh-hccCCCCCEEECCCCcCCC-Ch-hhcCCCCCCEEEccC------------------CcCCcc-hhh
Confidence 244443 6677778888887775333 33 355566665555554 444444 457
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLP 825 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp 825 (1170)
..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.++++|. +..+++|+.|+|++|.++..|
T Consensus 153 ~~l~~L~~L~L~~N~l~~-------~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISD-------IVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GGCTTCSEEECCSSCCCC-------CGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred ccCCCCCEEEccCCcccc-------chh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 788899999999998764 333 7788999999999999999875 889999999999999888765
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=2e-16 Score=196.20 Aligned_cols=290 Identities=13% Similarity=0.053 Sum_probs=152.4
Q ss_pred cCCCCCceEEEccCCCCCcccccccCCCcee-ecCCCcCCCCCeeEEEecCCCCCCCC-----CCC-CCCcCccccCCCC
Q 046888 551 TNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQ-FLDGLDYLPEKLRYLHLHKYPLRTLP-----SNF-KPKNLIELNLPFS 623 (1170)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~Lr~L~l~~~~l~~lp-----~~~-~~~~L~~L~L~~~ 623 (1170)
.++++|+.|+++++...+ .... +...+..+ ++|+.|++++|.+..+. ..+ .+++|++|++++|
T Consensus 161 ~~~~~L~~L~L~~~~~~~---------~~~~~l~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSE---------KDGKWLHELAQHN-TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HHCTTCSEEECTTCEEEC---------CCSHHHHHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred hhCCCCCEEECccccccC---------cchhHHHHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 477888888887653100 0000 00011122 47899999888876432 222 6788999999998
Q ss_pred CcccccccccccccceeecCCCCCCCcc----CCCCCCCCccccccccCCcccccCCCcccccccccccccccceeeccc
Q 046888 624 KVVQIWEGKKKAFKLKSINLSHSQYLIR----IPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINR 699 (1170)
Q Consensus 624 ~i~~l~~~~~~l~~L~~L~Ls~~~~l~~----~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~ 699 (1170)
.+..++..+..+++|+.|+++++..... ...+..+++|+.|++.++ ....+|..+..+++|++|++++
T Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--------~~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM--------GPNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC--------CTTTGGGGGGGGGGCCEEEETT
T ss_pred cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc--------chhHHHHHHhhcCCCcEEecCC
Confidence 8888888888888999998885432211 112556667777766542 2245666666777777777777
Q ss_pred cccccc-ccccccCCCcccEEecCCCCCchhh------hccccEEEcc-----------CcCCc--ccCccccCCCCCCE
Q 046888 700 CKRLKR-VSTSICKLKSLIWLCLNECLNLESF------LESLKKINLG-----------RTTVT--ELPSSFENIEGLGT 759 (1170)
Q Consensus 700 ~~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~~------~~~L~~L~L~-----------~~~i~--~lp~~l~~l~~L~~ 759 (1170)
|..... ++..+..+++|+.|+++++..-..+ .+.|++|+++ .+.++ .++.....+++|+.
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 763222 2233456667777766633211111 2346666666 23443 12222344666666
Q ss_pred EEccCCCCCCcCcCCcccCccccCCCCCCCEEeCC----CCCCCCCC------cccCCCCCCCEEECcCCC--Cc-cccc
Q 046888 760 LGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLN----NCALTAIP------EEIGCLPSLEWLELRENN--FE-SLPV 826 (1170)
Q Consensus 760 L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~----~~~l~~ip------~~l~~l~~L~~L~L~~n~--l~-~lp~ 826 (1170)
|++..+.+... .+......+++|+.|+|+ .|.+++.| ..+..+++|+.|+|+.|. ++ ..+.
T Consensus 383 L~l~~~~l~~~------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 383 MAVYVSDITNE------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp EEEEESCCCHH------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred EEeecCCccHH------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 66655554321 111101225556666664 33444432 113445556666654432 32 1111
Q ss_pred cc-cCCCCCCEEEecCCCCCC-CCC---CCccccceecccccc
Q 046888 827 SI-KQLSRLKRLDLSNCSMLQ-SIP---ELPPSLKWLQAGNCK 864 (1170)
Q Consensus 827 ~l-~~l~~L~~L~L~~c~~l~-~lp---~l~~~L~~L~i~~c~ 864 (1170)
.+ ..+++|+.|+|++|.... .++ .-.++|+.|++++|+
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 22 235555666665555321 111 112455555555554
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.54 E-value=8.7e-16 Score=190.46 Aligned_cols=297 Identities=18% Similarity=0.140 Sum_probs=171.8
Q ss_pred hcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCC-CCCcCccccCCCCCc---
Q 046888 550 FTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNF-KPKNLIELNLPFSKV--- 625 (1170)
Q Consensus 550 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i--- 625 (1170)
+.++++|+.|+++.+...... ...+...+... ++|+.|++++|.+..+|..+ .+++|++|+++....
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~--------~~~l~~~~~~~-~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKIS--------PKDLETIARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCC--------HHHHHHHHHHC-TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred HhcCCCccEEEeeccCCCccC--------HHHHHHHHhhC-CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc
Confidence 456788888888665421000 00111111122 47888888888777766554 667788887764321
Q ss_pred -ccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccccccccccccceeeccccccc
Q 046888 626 -VQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRL 703 (1170)
Q Consensus 626 -~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l 703 (1170)
...+..+..+++|+.|+++++. ...+|. +..+++|++|+|++|. + .. ..++..+..+++|+.|+++++...
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l--~~---~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-L--ET---EDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-C--CH---HHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred hHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-C--CH---HHHHHHHHhCcCCCEEeccCccCH
Confidence 2334556677778888777753 333443 4567777777777764 2 11 122233567778888888754444
Q ss_pred ccccccccCCCcccEEecCC----------CCCchhh--------hccccEEEccCcCCcc-cCccccC-CCCCCEEEcc
Q 046888 704 KRVSTSICKLKSLIWLCLNE----------CLNLESF--------LESLKKINLGRTTVTE-LPSSFEN-IEGLGTLGLE 763 (1170)
Q Consensus 704 ~~lp~~i~~L~~L~~L~l~~----------c~~l~~~--------~~~L~~L~L~~~~i~~-lp~~l~~-l~~L~~L~L~ 763 (1170)
..++.....+++|+.|++++ |..+... .+.|+.|++..+.++. .+..+.. +++|+.|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 44444445677788888874 5544321 3457888887777662 2334443 7778888886
Q ss_pred CC----CCCCcCcCCcccCccccCCCCCCCEEeCCCCC--CCC-CCccc-CCCCCCCEEECcCCCCc--cccccccCCCC
Q 046888 764 RS----QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCA--LTA-IPEEI-GCLPSLEWLELRENNFE--SLPVSIKQLSR 833 (1170)
Q Consensus 764 ~~----~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~--l~~-ip~~l-~~l~~L~~L~L~~n~l~--~lp~~l~~l~~ 833 (1170)
++ .+.+... -..++.. +.++++|+.|+|+.|. +++ .+..+ ..+++|+.|+|++|+++ .++..+..+++
T Consensus 412 ~~~~~n~l~~~p~-~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 412 LLDREERITDLPL-DNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp ECSCCSCCSSCCC-HHHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred ecCCCccccCchH-HHHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 33 2221000 0011111 4457778888887653 443 22222 34677888888888776 35555677788
Q ss_pred CCEEEecCCCCCCC-CCC---Cccccceecccccc
Q 046888 834 LKRLDLSNCSMLQS-IPE---LPPSLKWLQAGNCK 864 (1170)
Q Consensus 834 L~~L~L~~c~~l~~-lp~---l~~~L~~L~i~~c~ 864 (1170)
|+.|+|++|+.... ++. ..++|+.|++++|.
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 88888888873211 222 23677888888776
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=9e-14 Score=163.99 Aligned_cols=286 Identities=13% Similarity=0.009 Sum_probs=170.2
Q ss_pred CCCCccccchhHHHHHHHHh-hc--CC--CCeEEEEE--EecCCChHHHHHHHHHHHHhcc-----CCc-eEEEEechhh
Q 046888 182 DSSKGLVGLSSRIECIKSLL-CT--GL--PDVRIVGI--WGMGGIGKTTIVKALFNQISNE-----FEG-KCFIENVREE 248 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~ 248 (1170)
..+..|+||+.++++|.+++ .. .. ...+.+.| +|++|+||||||++++++.... +.. .+|+.
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----- 93 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----- 93 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-----
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-----
Confidence 34578999999999999988 42 11 23456666 9999999999999999987653 232 34554
Q ss_pred hhcCcCHHHHHHHHHHHHhcCcccCC--CCChhHHHHHHhc--CCCeEEEEeCCCCh--------HHHHHHHcccCCC--
Q 046888 249 IENGVGLVHLHKQVVSLLLGERLETG--GPNIPAYALERLR--RTKVFMVLDDVSEF--------EQLKYLVGWLDGF-- 314 (1170)
Q Consensus 249 ~~~~~~~~~l~~~ll~~l~~~~~~~~--~~~l~~~l~~~L~--~kk~LlVLDdv~~~--------~~~~~l~~~~~~~-- 314 (1170)
.........+..+++.++.......+ ...+...+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 33445677888888888754322111 1122334444554 67999999999653 3344443332211
Q ss_pred -C--CCcEEEEEeCChhHHHHhC-------CCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhC---
Q 046888 315 -C--PGSRIVVTTRDKQVLRKQG-------VKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAE--- 381 (1170)
Q Consensus 315 -~--~gsrIIiTTR~~~v~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~--- 381 (1170)
+ ....||+||++..+..... ..-...+.+++|+.+++.++|...+........-..+....+++.++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 2 3345888887665432111 01013499999999999999987643111111112356678899999
Q ss_pred ---CChhHHHHHHHHh------cC---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccC----
Q 046888 382 ---GNPLALEVLGSSL------QQ---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFK---- 445 (1170)
Q Consensus 382 ---GlPLAl~~lg~~L------~~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~---- 445 (1170)
|+|..+..+.... .+ .+.+.+...+..... ...+.-+++.|++.++.++..+|.+..
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 9997655544321 11 123334333332110 233444667899999999999997642
Q ss_pred CCCHHHHH----HHH-hhCCCC------HHHHHHHHHhcCCcEEe
Q 046888 446 GEGKDRVL----MLL-HDRQYN------VTQALSVLIDKSLIIEH 479 (1170)
Q Consensus 446 ~~~~~~l~----~l~-~~~~~~------~~~~l~~L~~~sLi~~~ 479 (1170)
......+. .+. ...+.. ...+++.|.+.+||...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 22333322 223 333321 34678999999999875
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.4e-14 Score=177.74 Aligned_cols=186 Identities=19% Similarity=0.235 Sum_probs=122.0
Q ss_pred ecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCC
Q 046888 598 LHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDT 677 (1170)
Q Consensus 598 l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n 677 (1170)
+..+.+..++..-.+.+|+.|++++|.+..++ .+..+++|+.|+|++|.+.... .+..+++|+.|+|+++
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N-------- 97 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDEN-------- 97 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS--------
T ss_pred ccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCC--------
Confidence 33333443333234556666666666666654 4566666666666666644332 2555566666555553
Q ss_pred cccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCC
Q 046888 678 AIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGL 757 (1170)
Q Consensus 678 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L 757 (1170)
.+..+| .+..+++|+.|+|++|.... ++ .+..|++|+.|+|++| .+..+ ..+..+++|
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N------------------~l~~l-~~l~~l~~L 155 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNN------------------KITDI-TVLSRLTKL 155 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSS------------------CCCCC-GGGGSCTTC
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCC------------------ccCCc-hhhcccCCC
Confidence 334444 47777888888888876433 33 3556666666655554 44444 457788889
Q ss_pred CEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc
Q 046888 758 GTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLP 825 (1170)
Q Consensus 758 ~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp 825 (1170)
+.|+|++|.+.. +++ +..+++|+.|+|++|.++++| .+..+++|+.|+|++|++...|
T Consensus 156 ~~L~Ls~N~l~~-------~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 156 DTLSLEDNQISD-------IVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SEEECCSSCCCC-------CGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CEEECcCCcCCC-------chh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 999998888764 333 778889999999999998875 5888999999999999887665
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=4.2e-14 Score=171.59 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=140.6
Q ss_pred CCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccc
Q 046888 555 NLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKK 634 (1170)
Q Consensus 555 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~ 634 (1170)
+|+.|+++++.. . .++..+ +++|++|++++|.++.+| -.+++|++|+|++|.++.+|. +..
T Consensus 60 ~L~~L~Ls~n~L------------~-~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNL------------S-SLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCC------------S-CCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT
T ss_pred CccEEEeCCCCC------------C-ccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc
Confidence 899999977642 1 133333 358999999999999999 457899999999999999988 655
Q ss_pred cccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCcccccccccccccccceeecccccccccccccccCCC
Q 046888 635 AFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLK 714 (1170)
Q Consensus 635 l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 714 (1170)
+|++|+|++|.+.. +|. .+++|+.|+|++ |.+..+|. .+++|+.|+|++|...+ +|. ++ +
T Consensus 121 --~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~--------N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~ 180 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTM-LPE--LPALLEYINADN--------NQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--E 180 (571)
T ss_dssp --TCCEEECCSSCCSC-CCC--CCTTCCEEECCS--------SCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred --CCCEEECCCCcCCC-CCC--cCccccEEeCCC--------CccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--C
Confidence 99999999998655 666 566666666655 66788887 67899999999997443 666 43 4
Q ss_pred cccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCC-------CEEEccCCCCCCcCcCCcccCccccCCCCC
Q 046888 715 SLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGL-------GTLGLERSQLPHLLSGLVSLPASLLSGLFS 787 (1170)
Q Consensus 715 ~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L-------~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~ 787 (1170)
+ |+.|+|++|.|+.+|. +.. +| +.|+|++|.+. .+|.. +..+++
T Consensus 181 ~------------------L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-------~lp~~-l~~l~~ 231 (571)
T 3cvr_A 181 S------------------LEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-------HIPEN-ILSLDP 231 (571)
T ss_dssp T------------------CCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-------CCCGG-GGGSCT
T ss_pred C------------------CCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-------ecCHH-HhcCCC
Confidence 4 4555555667777777 544 66 99999999986 57776 555999
Q ss_pred CCEEeCCCCCCCC-CCcccCCC
Q 046888 788 LNWLNLNNCALTA-IPEEIGCL 808 (1170)
Q Consensus 788 L~~L~L~~~~l~~-ip~~l~~l 808 (1170)
|+.|+|++|.+++ +|..+..+
T Consensus 232 L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp TEEEECCSSSCCHHHHHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHHHHHh
Confidence 9999999999986 56655543
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=1.8e-16 Score=196.76 Aligned_cols=293 Identities=16% Similarity=0.141 Sum_probs=159.6
Q ss_pred CCeeEEEecCCCCCC-----CCCCC-CCCcCccccCCCCC--cc--cccccccccccceeecCCCCCCCccCCC-CCCCC
Q 046888 591 EKLRYLHLHKYPLRT-----LPSNF-KPKNLIELNLPFSK--VV--QIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAP 659 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~--i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~ 659 (1170)
++|++|++++|.+.. ++... .+++|++|++++|. +. .+..-...+++|++|+|++|.....+|. +..++
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 235 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC
Confidence 378888888877553 22222 56688888888775 21 2222234567888888888754444444 45566
Q ss_pred ccccccccCCc-------------------cc----ccCCCcccccccccccccccceeeccccccccc-ccccccCCCc
Q 046888 660 NLERINLWNCT-------------------HL----NLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR-VSTSICKLKS 715 (1170)
Q Consensus 660 ~L~~L~L~~c~-------------------~L----~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~ 715 (1170)
+|+.|++..+. .| .+.......+|..+..+++|++|++++|..... ++..+.++++
T Consensus 236 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315 (594)
T ss_dssp TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTT
T ss_pred cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCC
Confidence 77777654332 22 112222233444445667777777777763222 2223456777
Q ss_pred ccEEecCCCCCchhh------hccccEEEccC---------cCCcc--cCccccCCCCCCEEEccCCCCCCcCcCCcccC
Q 046888 716 LIWLCLNECLNLESF------LESLKKINLGR---------TTVTE--LPSSFENIEGLGTLGLERSQLPHLLSGLVSLP 778 (1170)
Q Consensus 716 L~~L~l~~c~~l~~~------~~~L~~L~L~~---------~~i~~--lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp 778 (1170)
|+.|++++|..-..+ .+.|++|++.+ +.++. +......+++|+.|.+..+.+... ..
T Consensus 316 L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~------~~ 389 (594)
T 2p1m_B 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA------AL 389 (594)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH------HH
T ss_pred cCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH------HH
Confidence 777777776221111 24577777732 33331 111123467777776666665431 11
Q ss_pred ccccCCCCCCCEEeCC--C----CCCCCCC------cccCCCCCCCEEECcCCCCc-cccccccC-CCCCCEEEecCCCC
Q 046888 779 ASLLSGLFSLNWLNLN--N----CALTAIP------EEIGCLPSLEWLELRENNFE-SLPVSIKQ-LSRLKRLDLSNCSM 844 (1170)
Q Consensus 779 ~~~l~~l~~L~~L~L~--~----~~l~~ip------~~l~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~c~~ 844 (1170)
......+++|+.|+|+ + +.++..| ..+..+++|+.|+|++ +++ ..+..+.. +++|+.|+|++|..
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i 468 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD 468 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC
Confidence 1112346778888887 3 3555433 2245677888888876 454 22233433 77888888888874
Q ss_pred CCCC-C---CCccccceeccccccccCCCCCCCCCchhhhhhhhhccccccCCC
Q 046888 845 LQSI-P---ELPPSLKWLQAGNCKRLQSLPEIPSRPEEIDASLLQKLSKYSYDD 894 (1170)
Q Consensus 845 l~~l-p---~l~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~L~~L~~~~c~~ 894 (1170)
.... + .-.++|+.|++.+|+. ...+ .... ...++.|+.|.+.+|+.
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~-~~~~--~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPF-GDKA-LLAN--ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSC-CHHH-HHHT--GGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCC-cHHH-HHHH--HHhCCCCCEEeeeCCCC
Confidence 3221 1 1146788888887763 1110 0000 01234577777777744
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=6.9e-14 Score=153.97 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=105.9
Q ss_pred CCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCccccccccccccc
Q 046888 611 KPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLT 690 (1170)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~ 690 (1170)
.+.+++.++++.+.++.++ .+..+++|+.|++++|.+ ..+| .++.++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-------------------------------~~l~-~l~~l~ 63 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-------------------------------QSLA-GMQFFT 63 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-------------------------------CCCT-TGGGCT
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-------------------------------ccch-HHhhCC
Confidence 4455666677777776665 456666777777766653 2333 344555
Q ss_pred ccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCc
Q 046888 691 NLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHL 770 (1170)
Q Consensus 691 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~ 770 (1170)
+|+.|++++|.. ..+|. +.++++|+.|++++| .++.+|.... ++|+.|+|++|.+..
T Consensus 64 ~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~N------------------~l~~l~~~~~--~~L~~L~L~~N~l~~- 120 (263)
T 1xeu_A 64 NLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRN------------------RLKNLNGIPS--ACLSRLFLDNNELRD- 120 (263)
T ss_dssp TCCEEECCSSCC-CCCGG-GTTCSSCCEEECCSS------------------CCSCCTTCCC--SSCCEEECCSSCCSB-
T ss_pred CCCEEECCCCcc-CCChh-hccCCCCCEEECCCC------------------ccCCcCcccc--CcccEEEccCCccCC-
Confidence 555555555542 22333 445555544444433 3333333222 667777777776653
Q ss_pred CcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCCCEEEecCCCCC
Q 046888 771 LSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 771 ~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 845 (1170)
++. +..+++|+.|+|++|++++++ .+..+++|+.|+|++|+++.+ ..+..+++|+.|+|++|+..
T Consensus 121 ------~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 121 ------TDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ------SGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ------Chh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 222 677778888888888888775 577788888888888888877 46778888888888888743
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.1e-15 Score=174.62 Aligned_cols=216 Identities=16% Similarity=0.118 Sum_probs=148.2
Q ss_pred cccCCCCCcccc-cccccccccceeecCCCCCCCccCC----C-CCCCC-ccccccccCCcccccCCCccccc-cccccc
Q 046888 617 ELNLPFSKVVQI-WEGKKKAFKLKSINLSHSQYLIRIP----D-PSEAP-NLERINLWNCTHLNLCDTAIEEV-PSSVEC 688 (1170)
Q Consensus 617 ~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p----~-~~~l~-~L~~L~L~~c~~L~l~~n~i~~l-p~~i~~ 688 (1170)
++++++|.+... |..+....+|++|+|++|.+....+ . +..++ +|++|+|+++ .+... +..+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--------~l~~~~~~~l~~ 73 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN--------SLGFKNSDELVQ 73 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS--------CGGGSCHHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC--------CCCHHHHHHHHH
Confidence 456777888744 4444555669999999998655443 2 55666 7888877775 33433 334444
Q ss_pred c-----cccceeecccccccccccccc----cCC-CcccEEecCCCCCchh-----------hhccccEEEccCcCCc--
Q 046888 689 L-----TNLEYLYINRCKRLKRVSTSI----CKL-KSLIWLCLNECLNLES-----------FLESLKKINLGRTTVT-- 745 (1170)
Q Consensus 689 l-----~~L~~L~L~~~~~l~~lp~~i----~~L-~~L~~L~l~~c~~l~~-----------~~~~L~~L~L~~~~i~-- 745 (1170)
+ ++|++|+|++|......+..+ ..+ ++|++|++++|.--.. ++..|++|++++|.++
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 4 899999999998665555533 344 8999999998852111 1457999999998888
Q ss_pred ---ccCccccCCC-CCCEEEccCCCCCCcCcCCcccCccccCCC-CCCCEEeCCCCCCCC-----CCcccCC-CCCCCEE
Q 046888 746 ---ELPSSFENIE-GLGTLGLERSQLPHLLSGLVSLPASLLSGL-FSLNWLNLNNCALTA-----IPEEIGC-LPSLEWL 814 (1170)
Q Consensus 746 ---~lp~~l~~l~-~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l-~~L~~L~L~~~~l~~-----ip~~l~~-l~~L~~L 814 (1170)
.++..+..++ +|++|+|++|.+..... ..+.. .+..+ ++|+.|+|++|.+++ ++..+.. .++|+.|
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~--~~l~~-~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNC--AELAK-FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhH--HHHHH-HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 4445556665 89999999988754211 01111 13445 489999999998886 5666655 4589999
Q ss_pred ECcCCCCcccc-----ccccCCCCCCEEEecCCC
Q 046888 815 ELRENNFESLP-----VSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 815 ~L~~n~l~~lp-----~~l~~l~~L~~L~L~~c~ 843 (1170)
+|++|.++..+ ..+..+++|+.|+|++|.
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 99999887543 345778889999999886
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=2.7e-13 Score=145.95 Aligned_cols=150 Identities=26% Similarity=0.332 Sum_probs=120.4
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-c
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS-S 750 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~-~ 750 (1170)
++.+++.+..+|..+. ++|++|+|++|...+..|..+.++++|+.|++++ |.++.+|. .
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~------------------N~l~~i~~~~ 83 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS------------------NQLGALPVGV 83 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS------------------SCCCCCCTTT
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC------------------CCCCCcChhh
Confidence 3445566678887654 7899999999887776677777777776666655 45666664 4
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccc-ccc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV-SIK 829 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~-~l~ 829 (1170)
+..+++|+.|+|++|.+. .++...+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+|. .+.
T Consensus 84 ~~~l~~L~~L~Ls~N~l~-------~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLT-------VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cccCCCcCEEECCCCcCC-------ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence 688999999999999876 455555788999999999999999999999999999999999999998874 578
Q ss_pred CCCCCCEEEecCCCCCCCC
Q 046888 830 QLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 830 ~l~~L~~L~L~~c~~l~~l 848 (1170)
.+++|+.|+|++|+.....
T Consensus 157 ~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCTTCCEEECTTSCBCTTB
T ss_pred CCCCCCEEEeeCCCccCCc
Confidence 8999999999999865443
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=6.7e-12 Score=146.41 Aligned_cols=274 Identities=12% Similarity=0.050 Sum_probs=175.1
Q ss_pred CCccccchhHHHHHHHHhhc--CCCCeEEEEEEecCCChHHHHHHHHHHHHhcc--------CCceEEEEechhhhhcCc
Q 046888 184 SKGLVGLSSRIECIKSLLCT--GLPDVRIVGIWGMGGIGKTTIVKALFNQISNE--------FEGKCFIENVREEIENGV 253 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~~~ 253 (1170)
++.++||+.+++++..++.. .....+.+.|+|++|+||||||+++++.+... ....+++. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-----CREVG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-----HHHHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-----CccCC
Confidence 47899999999999988753 23445789999999999999999999987443 22334443 33334
Q ss_pred -CHHHHHHHHHHHHhcCcccC---CCCChhHHHHHHhcCCCeEEEEeCCCChHH-------HHHHHcccCCCCCCcEEEE
Q 046888 254 -GLVHLHKQVVSLLLGERLET---GGPNIPAYALERLRRTKVFMVLDDVSEFEQ-------LKYLVGWLDGFCPGSRIVV 322 (1170)
Q Consensus 254 -~~~~l~~~ll~~l~~~~~~~---~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~-------~~~l~~~~~~~~~gsrIIi 322 (1170)
....+..+++.++.+..... ....+...+.+.+..++.+|||||++.... +..+.. +. .+.+||+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~---~~-~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR---SD-ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT---SS-SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc---CC-cceEEEE
Confidence 66677778888775443222 122334445566776666999999976432 333332 22 6778999
Q ss_pred EeCChhH----HHHh--CCCCcceEeecCCCHhHHHHHHHHHHhc---cCCCChhHHHHHHHHHHHhC---CChh-HHHH
Q 046888 323 TTRDKQV----LRKQ--GVKDEHVYEVERLNEDEGLELFYKYAFR---QNHRPEHLTVLSKKAVRYAE---GNPL-ALEV 389 (1170)
Q Consensus 323 TTR~~~v----~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~ 389 (1170)
||+.... .... ... ..+++++++.++..+++..++.. ..... .+..+.++++++ |.|. |+..
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHH
Confidence 9987532 1111 112 48999999999999999988632 12222 234556777777 9887 4444
Q ss_pred HHHHh--c----CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCCCCH-HHHHHHHhhCCCC
Q 046888 390 LGSSL--Q----QKSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKGEGK-DRVLMLLHDRQYN 462 (1170)
Q Consensus 390 lg~~L--~----~~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~l~~~~~~~ 462 (1170)
+-... . ..+.+.+..+++... ...+..+++.|++.++..+..++....+.+. +....+....|..
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~~--------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~ 316 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDYE--------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQK 316 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHHH--------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHHh--------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCC
Confidence 33322 1 246777777776542 2346677889999999988888772111112 2333444433321
Q ss_pred ------HHHHHHHHHhcCCcEEe
Q 046888 463 ------VTQALSVLIDKSLIIEH 479 (1170)
Q Consensus 463 ------~~~~l~~L~~~sLi~~~ 479 (1170)
...++..|.++++|...
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 35668899999999874
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=7.1e-14 Score=146.73 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=25.1
Q ss_pred ccccccccceeecccccccccccccccCCCcccEEecCCC
Q 046888 685 SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNEC 724 (1170)
Q Consensus 685 ~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c 724 (1170)
.+..+++|++|++++|......|..++.+++|++|++++|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 3555666666666666655555666666666666666654
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=5.8e-13 Score=142.33 Aligned_cols=146 Identities=21% Similarity=0.398 Sum_probs=111.5
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCccc-Ccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTEL-PSS 750 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~l-p~~ 750 (1170)
++++++.+..+|..+. ++|+.|++++|......+..+..+++|+.|++++ |.++.+ |..
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~------------------N~i~~~~~~~ 75 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN------------------NQISELAPDA 75 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS------------------SCCCEECTTT
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC------------------CcCCCcCHHH
Confidence 3445566677777654 6788888888765544444666666666665554 455555 667
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccccc-cc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLPV-SI 828 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~-~l 828 (1170)
+..+++|++|+|++|.+. .+|...+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+|. .+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~-------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKIT-------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp TTTCSSCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred hhCCcCCCEEECCCCcCC-------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 888889999999998876 46666678899999999999999986 5678889999999999999998865 47
Q ss_pred cCCCCCCEEEecCCCC
Q 046888 829 KQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 829 ~~l~~L~~L~L~~c~~ 844 (1170)
..+++|+.|+|++|+.
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 8899999999999974
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=3.9e-13 Score=142.38 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=43.9
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCCEEECcCCCCccccccccC
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPVSIKQ 830 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~~L~L~~n~l~~lp~~l~~ 830 (1170)
..+++|+.|+|++|.+. .++...+..+++|+.|+|++|.++++|.. +..+++|+.|+|++|.+. ..
T Consensus 97 ~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~ 163 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQ-------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CT 163 (208)
T ss_dssp TTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CC
T ss_pred cCccCCCEEEcCCCcCc-------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cC
Confidence 44445555555555443 23333345555555555555555554433 455556666666665432 23
Q ss_pred CCCCCEEEecCCCCCCCCCC
Q 046888 831 LSRLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 831 l~~L~~L~L~~c~~l~~lp~ 850 (1170)
+++|+.|+++.|...+.+|.
T Consensus 164 ~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBBC
T ss_pred CCCHHHHHHHHHhCCceeec
Confidence 44555555555555555554
No 125
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=2.2e-13 Score=142.93 Aligned_cols=139 Identities=19% Similarity=0.302 Sum_probs=97.5
Q ss_pred CCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcc-cCccccCC
Q 046888 676 DTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTE-LPSSFENI 754 (1170)
Q Consensus 676 ~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~-lp~~l~~l 754 (1170)
+|.+..+| .+..+++|++|++++|. ...++ .+..+++| +.|++++|.++. .|..+..+
T Consensus 53 ~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L------------------~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 53 NINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNL------------------ERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp SSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTC------------------CEEEEECTTCBGGGSCCCTTC
T ss_pred CCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCC------------------CEEEeECCccCcccChhhcCC
Confidence 34445555 46666666666666652 22222 34444444 444555556663 56778888
Q ss_pred CCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCC-CCCCCcccCCCCCCCEEECcCCCCccccccccCCCC
Q 046888 755 EGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCA-LTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSR 833 (1170)
Q Consensus 755 ~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~-l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 833 (1170)
++|+.|++++|.+.. ..+.. +..+++|+.|+|++|. ++++| .+..+++|+.|++++|.++.++ .+..+++
T Consensus 112 ~~L~~L~Ls~n~i~~------~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDD------SILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPK 182 (197)
T ss_dssp TTCCEEECCSSBCBG------GGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSS
T ss_pred CCCCEEEecCCccCc------HhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCC
Confidence 999999999988764 22332 7788899999999997 77787 6888899999999999998887 7888999
Q ss_pred CCEEEecCCCC
Q 046888 834 LKRLDLSNCSM 844 (1170)
Q Consensus 834 L~~L~L~~c~~ 844 (1170)
|+.|++++|+.
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 99999998874
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=8.2e-13 Score=141.15 Aligned_cols=148 Identities=20% Similarity=0.296 Sum_probs=108.5
Q ss_pred cccCCCcccccccccccccccceeeccccccccccc-ccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS-TSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS- 749 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~- 749 (1170)
+++++|.+..+|..+. ..++.|+|++|......| ..+.++++|+.|++++ |.++.++.
T Consensus 16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~------------------N~i~~i~~~ 75 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN------------------NKITDIEEG 75 (220)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS------------------SCCCEECTT
T ss_pred eEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC------------------CcCCEECHH
Confidence 4445556666776553 345778888776544433 2355666655555544 55665554
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccc-ccc
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESL-PVS 827 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~l-p~~ 827 (1170)
.+..+++|++|+|++|.+. .++...+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+ |..
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLE-------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp TTTTCTTCCEEECCSSCCC-------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred HhCCCCCCCEEECCCCccC-------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 6788888999999988876 45555588899999999999999886 67788899999999999999977 678
Q ss_pred ccCCCCCCEEEecCCCCCC
Q 046888 828 IKQLSRLKRLDLSNCSMLQ 846 (1170)
Q Consensus 828 l~~l~~L~~L~L~~c~~l~ 846 (1170)
+..+++|+.|+|++|+...
T Consensus 149 ~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTCTTCCEEECCSCCEEC
T ss_pred hcCCCCCCEEEecCcCCcC
Confidence 8889999999999998543
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=1e-12 Score=139.21 Aligned_cols=167 Identities=24% Similarity=0.329 Sum_probs=127.0
Q ss_pred ccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-cc
Q 046888 673 NLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS-SF 751 (1170)
Q Consensus 673 ~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~-~l 751 (1170)
+.+++.+..+|..+ .++|++|++++|......+..+.++++|++|++++ |.++.+|. .+
T Consensus 13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------n~l~~~~~~~~ 72 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG------------------NKLQSLPNGVF 72 (208)
T ss_dssp ECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS------------------SCCCCCCTTTT
T ss_pred EecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC------------------CccCccChhhc
Confidence 44455667777655 45889999999875544444466677766666655 45565655 46
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCCEEECcCCCCcccccc-cc
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESLPVS-IK 829 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~~L~L~~n~l~~lp~~-l~ 829 (1170)
..+++|++|+|++|.+. .++...+.++++|+.|+|++|.++.+|.. +..+++|+.|+|++|+++.+|.. +.
T Consensus 73 ~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQ-------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp TTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCCCCcCEEECCCCcCC-------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 88999999999999876 45555578999999999999999997764 78899999999999999988765 78
Q ss_pred CCCCCCEEEecCCCCCCCCCCCccccceeccccccccCCCC
Q 046888 830 QLSRLKRLDLSNCSMLQSIPELPPSLKWLQAGNCKRLQSLP 870 (1170)
Q Consensus 830 ~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~ 870 (1170)
.+++|+.|+|++|+..... ++|+.|.+..+.--..+|
T Consensus 146 ~l~~L~~L~l~~N~~~~~~----~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TCTTCCEEECCSCCBCCCT----TTTHHHHHHHHHCTTTBB
T ss_pred cCCCccEEEecCCCeecCC----CCHHHHHHHHHhCCceee
Confidence 8999999999999866554 367777777655444444
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=2.2e-15 Score=186.87 Aligned_cols=303 Identities=15% Similarity=0.103 Sum_probs=185.6
Q ss_pred hcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-----C-CCCcCccccCCCC
Q 046888 550 FTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-----F-KPKNLIELNLPFS 623 (1170)
Q Consensus 550 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-----~-~~~~L~~L~L~~~ 623 (1170)
+.++++|+.|+++++...+ ........+....++|+.|++++|. ..++.. . .+++|++|++++|
T Consensus 152 ~~~~~~L~~L~L~~~~i~~---------~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDD---------VSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECTTCEEEC---------CCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHhCCCCCEEeCcCCccCC---------cchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3478888888887653100 0111112222223489999999886 323211 1 4688999999988
Q ss_pred -CcccccccccccccceeecCCCCCC-------CccCCCCCCCCccccc----------------cccCCcccccCCCcc
Q 046888 624 -KVVQIWEGKKKAFKLKSINLSHSQY-------LIRIPDPSEAPNLERI----------------NLWNCTHLNLCDTAI 679 (1170)
Q Consensus 624 -~i~~l~~~~~~l~~L~~L~Ls~~~~-------l~~~p~~~~l~~L~~L----------------~L~~c~~L~l~~n~i 679 (1170)
.+..++..+..+++|+.|+++.+.. ....+.+.++++|+.| .+.+++.|++++|.+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 5666777777888888888765531 0000012223333332 123334444444443
Q ss_pred cc--cccccccccccceeecccccccccccccccCCCcccEEecCC--------CCCchh-----h---hccccEEEccC
Q 046888 680 EE--VPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNE--------CLNLES-----F---LESLKKINLGR 741 (1170)
Q Consensus 680 ~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~--------c~~l~~-----~---~~~L~~L~L~~ 741 (1170)
.. ++..+..+++|+.|++++|.....++.....+++|+.|++.+ |..+.. + .++|+.|.+..
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 32 333467899999999999843333444344689999999943 444432 1 35699999888
Q ss_pred cCCccc-Cccc-cCCCCCCEEEcc--C---C-CCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCC-CCCC
Q 046888 742 TTVTEL-PSSF-ENIEGLGTLGLE--R---S-QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGC-LPSL 811 (1170)
Q Consensus 742 ~~i~~l-p~~l-~~l~~L~~L~L~--~---~-~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~-l~~L 811 (1170)
+.++.. +..+ ..+++|+.|+++ + | .+... +....++. .+.++++|+.|+|++ .+++ .+..+.. +++|
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~~~-l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PLDIGFGA-IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CTHHHHHH-HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-chhhHHHH-HHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 888732 2333 368999999999 3 2 22210 00001111 156788999999987 6664 2333443 8999
Q ss_pred CEEECcCCCCcc--ccccccCCCCCCEEEecCCCCCCC----CCCCccccceeccccccc
Q 046888 812 EWLELRENNFES--LPVSIKQLSRLKRLDLSNCSMLQS----IPELPPSLKWLQAGNCKR 865 (1170)
Q Consensus 812 ~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~c~~l~~----lp~l~~~L~~L~i~~c~~ 865 (1170)
+.|+|++|.++. ++.....+++|+.|+|++|+.... +..-.++|+.|++.+|+.
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999999999873 332236799999999999997322 112247899999999964
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=6.1e-13 Score=153.77 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=58.3
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCccc----CCCCCCCEEECcCCCCcccc
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEI----GCLPSLEWLELRENNFESLP 825 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l----~~l~~L~~L~L~~n~l~~lp 825 (1170)
.+..+++|+.|+|++|.+.. +++..+.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.+|
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~-------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVV-------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred HhCCCcCCCEEECCCCcccE-------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 35556666666666666542 33333677777777777777777777654 46788888888888888776
Q ss_pred -ccccCCCC--CCEEEecCCCC
Q 046888 826 -VSIKQLSR--LKRLDLSNCSM 844 (1170)
Q Consensus 826 -~~l~~l~~--L~~L~L~~c~~ 844 (1170)
..+..++. |+.|+|++|+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCE
T ss_pred HHHhhhccHhhcceEEecCCCc
Confidence 34566665 37788888764
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2.6e-12 Score=137.27 Aligned_cols=112 Identities=25% Similarity=0.318 Sum_probs=77.3
Q ss_pred cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCcc-ccCCCCCCEEEccC
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSS-FENIEGLGTLGLER 764 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~ 764 (1170)
+..+++|+.|+|++|......|..+.++++|++|+|++ |.++.+|.. +..+++|+.|+|++
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~------------------N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG------------------NKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS------------------SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC------------------CcCCccCHhHccCCCCCCEEECCC
Confidence 44555555555555554444455555555555544443 345555543 56778888888888
Q ss_pred CCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCc
Q 046888 765 SQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 765 ~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~ 822 (1170)
|.+.. +++..+.++++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 114 N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 114 NKINC-------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCC-------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCE-------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88763 444448888999999999999998765 5888999999999999876
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1e-12 Score=144.54 Aligned_cols=155 Identities=21% Similarity=0.344 Sum_probs=119.2
Q ss_pred CCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCC
Q 046888 675 CDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENI 754 (1170)
Q Consensus 675 ~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l 754 (1170)
+.+.+..++ .+..+++|+.|++++|. +..+| .+..+++|+.|+++ +|.++.+|. +..+
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~------------------~N~i~~~~~-l~~l 84 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLS------------------HNQISDLSP-LKDL 84 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECC------------------SSCCCCCGG-GTTC
T ss_pred cCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECC------------------CCccCCChh-hccC
Confidence 334556666 47788888888888875 44555 45566666555554 456777766 8899
Q ss_pred CCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccccccCCCCC
Q 046888 755 EGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPVSIKQLSRL 834 (1170)
Q Consensus 755 ~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 834 (1170)
++|+.|+|++|.+.. +|. +.. ++|+.|+|++|.+++++ .+..+++|+.|+|++|+++.+| .+..+++|
T Consensus 85 ~~L~~L~L~~N~l~~-------l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L 152 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-------LNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKL 152 (263)
T ss_dssp SSCCEEECCSSCCSC-------CTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTC
T ss_pred CCCCEEECCCCccCC-------cCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCC
Confidence 999999999999864 333 333 89999999999999986 5899999999999999999997 78999999
Q ss_pred CEEEecCCCCCCCCCCC--ccccceecccccc
Q 046888 835 KRLDLSNCSMLQSIPEL--PPSLKWLQAGNCK 864 (1170)
Q Consensus 835 ~~L~L~~c~~l~~lp~l--~~~L~~L~i~~c~ 864 (1170)
+.|+|++|+.... +.+ .++|+.|++.+++
T Consensus 153 ~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 153 EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 9999999985443 332 3577778777664
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=4e-11 Score=139.82 Aligned_cols=281 Identities=12% Similarity=0.096 Sum_probs=171.6
Q ss_pred CCCCccccchhHHHHHHHHhhcC--CCCeEEEEEEecCCChHHHHHHHHHHHHhccC-----C-ceEEEEechhhhhcCc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTG--LPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-----E-GKCFIENVREEIENGV 253 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~-~~~~~~~~~~~~~~~~ 253 (1170)
..++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ . ..+++. .....
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~ 90 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-----ARHRE 90 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-----TTTSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-----CCcCC
Confidence 34578999999999999988532 34567899999999999999999999775432 2 234443 34445
Q ss_pred CHHHHHHHHHHHHhcCcccCC--CCChhHHHHHHh--cCCCeEEEEeCCCChH----H---HHHHHcccCCC--CCCcEE
Q 046888 254 GLVHLHKQVVSLLLGERLETG--GPNIPAYALERL--RRTKVFMVLDDVSEFE----Q---LKYLVGWLDGF--CPGSRI 320 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~--~~~l~~~l~~~L--~~kk~LlVLDdv~~~~----~---~~~l~~~~~~~--~~gsrI 320 (1170)
+...+...++.++.......+ ...+...+.+.+ .+++.+||||+++... . +..+....... ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 666777888888754322211 112233344455 3458899999997653 2 22233222111 345678
Q ss_pred EEEeCChhHH----HHh--CCCCcceEeecCCCHhHHHHHHHHHHhc---cCCCChhHHHHHHHHHHHhC---CChh-HH
Q 046888 321 VVTTRDKQVL----RKQ--GVKDEHVYEVERLNEDEGLELFYKYAFR---QNHRPEHLTVLSKKAVRYAE---GNPL-AL 387 (1170)
Q Consensus 321 IiTTR~~~v~----~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~~~~~~~~~~i~~~~~---GlPL-Al 387 (1170)
|+||+..... ... ... ...+.+++++.++..+++...+.. ..... .+..+.++++++ |.|- ++
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHH
Confidence 8888765221 111 111 147899999999999999988632 12222 234566777887 9993 33
Q ss_pred HHHHHHhc-----C---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCCCC---HH----HH
Q 046888 388 EVLGSSLQ-----Q---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKGEG---KD----RV 452 (1170)
Q Consensus 388 ~~lg~~L~-----~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~l 452 (1170)
.++..... + .+.+.+..+++... ...+.-++..|+++++..++.++....+.+ .. ..
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIE--------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH--------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh--------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 33322221 1 35666766665542 234566788999999999988886544432 22 22
Q ss_pred HHHHhhCCC------CHHHHHHHHHhcCCcEEe
Q 046888 453 LMLLHDRQY------NVTQALSVLIDKSLIIEH 479 (1170)
Q Consensus 453 ~~l~~~~~~------~~~~~l~~L~~~sLi~~~ 479 (1170)
..+....+. .....++.|...|++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 319 KELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 233333332 134668889999999874
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=1.3e-11 Score=143.88 Aligned_cols=284 Identities=16% Similarity=0.141 Sum_probs=168.1
Q ss_pred CCCCccccchhHHHHHHHHhhcC--CCCeEEEEEEecCCChHHHHHHHHHHHHhccCC---ceEEEEechhhhhcCcCHH
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTG--LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE---GKCFIENVREEIENGVGLV 256 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~ 256 (1170)
..++.|+||+.+++++.+++... ....+.+.|+|++|+||||||+++++.+...+. ..+|+. ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-----~~~~~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-----TRQIDTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-----HHHHCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-----CCCCCCHH
Confidence 44578999999999999988642 345678999999999999999999998866542 344544 22233444
Q ss_pred HHHHHHHHHHhcCcccCC--CCChhHHHHHHhc--CCCeEEEEeCCCCh------HHHHHHHcccCC-CCCCcEEEEEeC
Q 046888 257 HLHKQVVSLLLGERLETG--GPNIPAYALERLR--RTKVFMVLDDVSEF------EQLKYLVGWLDG-FCPGSRIVVTTR 325 (1170)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~--~~~l~~~l~~~L~--~kk~LlVLDdv~~~------~~~~~l~~~~~~-~~~gsrIIiTTR 325 (1170)
.+...++..+.......+ ...+...+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 555555554432211111 1122233334443 45899999999653 234444433321 234556788887
Q ss_pred ChhHHHHh------CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhC---CChhHH-HHHHHHhc
Q 046888 326 DKQVLRKQ------GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAE---GNPLAL-EVLGSSLQ 395 (1170)
Q Consensus 326 ~~~v~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPLAl-~~lg~~L~ 395 (1170)
+....... ... ...+.+++++.++..+++...+...........+..+.++++++ |.|..+ .++.....
T Consensus 172 ~~~~~~~~~~~~~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLS-EEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp CGGGGGGCTTHHHHTTT-TEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCC-CeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66432211 111 14899999999999999988753211111122344566777777 999844 33322211
Q ss_pred -----C---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccC-CC---CHHHH----HHHHhhC
Q 046888 396 -----Q---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFK-GE---GKDRV----LMLLHDR 459 (1170)
Q Consensus 396 -----~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~---~~~~l----~~l~~~~ 459 (1170)
+ .+.+.++.++.... ...+.-++.++++.++.++..++.+.+ +. ....+ ..+....
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE--------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH--------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh--------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 35566666655432 245666788999999999988886433 21 12222 3333322
Q ss_pred CCC------HHHHHHHHHhcCCcEEe
Q 046888 460 QYN------VTQALSVLIDKSLIIEH 479 (1170)
Q Consensus 460 ~~~------~~~~l~~L~~~sLi~~~ 479 (1170)
|.. ...+++.|.+.++|...
T Consensus 323 g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 222 35678899999999764
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=4e-12 Score=136.77 Aligned_cols=63 Identities=27% Similarity=0.348 Sum_probs=36.0
Q ss_pred cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCc
Q 046888 752 ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 752 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~ 822 (1170)
..+++|+.|+|++|.+. .+|.. +..+++|+.|+|++|.++.+| ..+..+++|+.|+|++|.+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~-------~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT-------ELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCC-------SCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCccc-------ccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 34445555555555443 23333 455556666666666666654 34566777777777777665
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=3.2e-12 Score=147.65 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=114.8
Q ss_pred cccCCCcccccccccccccccceeeccccccccccccccc-CCCcccEEecCCCCCchhhhccccEEEccCcCCcccC-c
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSIC-KLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELP-S 749 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp-~ 749 (1170)
++++++.+..+|..+. +.|+.|+|++|......+..+. ++++|+.|+|+ +|.|+.++ .
T Consensus 23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~------------------~N~i~~i~~~ 82 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS------------------HNHLNFISSE 82 (361)
T ss_dssp EECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC------------------SSCCCEECTT
T ss_pred EEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECC------------------CCcCCccChh
Confidence 4555566677777654 4588889988865544444444 56666555554 45666665 4
Q ss_pred cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCC-CcccCCCCCCCEEECcCCCCccccccc
Q 046888 750 SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAI-PEEIGCLPSLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 750 ~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~~l 828 (1170)
.+.++++|+.|+|++|.+. .++...+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+|+.+|..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLH-------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTTTCTTCCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred hccCCCCCCEEECCCCcCC-------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 6889999999999999976 45665689999999999999999986 678999999999999999999998765
Q ss_pred ----cCCCCCCEEEecCCCCCCCCC
Q 046888 829 ----KQLSRLKRLDLSNCSMLQSIP 849 (1170)
Q Consensus 829 ----~~l~~L~~L~L~~c~~l~~lp 849 (1170)
..+++|+.|+|++|+. +.+|
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l-~~l~ 179 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKL-KKLP 179 (361)
T ss_dssp TC----CTTCCEEECCSSCC-CCCC
T ss_pred hcCcccCCcCCEEECCCCCC-CccC
Confidence 5799999999999974 4454
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=4.5e-12 Score=135.39 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=90.0
Q ss_pred eEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccc--cccccccceeecCCCCCCCccCCCCCCCCccccccccCCcc
Q 046888 594 RYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWE--GKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTH 671 (1170)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 671 (1170)
+.++++++.++.+|..+ +..+++|+|++|.++.++. .+..+++|++|+|++|.+....+.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~----------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG----------------- 75 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-----------------
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-----------------
Confidence 46777788888777654 3456777777777776632 256777777777777764333221
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCccc-Ccc
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTEL-PSS 750 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~l-p~~ 750 (1170)
.+..+++|++|+|++|......|..+.++++|++|++++ |.++.+ |..
T Consensus 76 -------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------------------N~l~~~~~~~ 124 (220)
T 2v70_A 76 -------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS------------------NRITCVGNDS 124 (220)
T ss_dssp -------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT------------------SCCCCBCTTS
T ss_pred -------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC------------------CcCCeECHhH
Confidence 345555555566655554444444455555555444443 334433 345
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCC
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALT 799 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~ 799 (1170)
+..+++|+.|+|++|.+.. +++..+..+++|+.|+|++|.+.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITT-------VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp STTCTTCSEEECTTSCCCC-------BCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCCccCCEEECCCCcCCE-------ECHHHhcCCCCCCEEEecCcCCc
Confidence 6666677777777776653 33333667777777777777665
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3.1e-13 Score=170.20 Aligned_cols=195 Identities=21% Similarity=0.228 Sum_probs=100.3
Q ss_pred CcCccccCCCCCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCCCccccccccccccccc
Q 046888 613 KNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNL 692 (1170)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L 692 (1170)
..++.|+|.+|.+...+..+ |+.++|+.+.+. .++++.|.+...|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~---------------------~~~~~~n~~~~~~~~~~~l~~L 226 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSID---------------------EDDDIENRMVMPKDSKYDDQLW 226 (727)
T ss_dssp ---------------------------------------------------------------------------CCCCC
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCccccc---------------------CccccccceecChhhhccCCCC
Confidence 45667777777766654433 334444444321 1233344555566677888888
Q ss_pred ceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCc
Q 046888 693 EYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLS 772 (1170)
Q Consensus 693 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 772 (1170)
+.|+|++|... .+|..++++++|+.|+|+ +|.|+.+|..+.++++|+.|+|++|.+.
T Consensus 227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls------------------~N~l~~lp~~~~~l~~L~~L~Ls~N~l~---- 283 (727)
T 4b8c_D 227 HALDLSNLQIF-NISANIFKYDFLTRLYLN------------------GNSLTELPAEIKNLSNLRVLDLSHNRLT---- 283 (727)
T ss_dssp CEEECTTSCCS-CCCGGGGGCCSCSCCBCT------------------TSCCSCCCGGGGGGTTCCEEECTTSCCS----
T ss_pred cEEECCCCCCC-CCChhhcCCCCCCEEEee------------------CCcCcccChhhhCCCCCCEEeCcCCcCC----
Confidence 88888887744 677766666665555544 4566677888888888888888888875
Q ss_pred CCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCc-cccccccCCC-CCCEEEecCCCCCCCCCC
Q 046888 773 GLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFE-SLPVSIKQLS-RLKRLDLSNCSMLQSIPE 850 (1170)
Q Consensus 773 ~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~c~~l~~lp~ 850 (1170)
.+|.. +.++++|+.|+|++|.|+.+|..++.+++|+.|+|++|.|+ .+|..+..+. .+..|+|++|.....+|
T Consensus 284 ---~lp~~-~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p- 358 (727)
T 4b8c_D 284 ---SLPAE-LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP- 358 (727)
T ss_dssp ---SCCSS-GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_pred ---ccChh-hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-
Confidence 45655 77888899999999988888888888999999999999888 4455443332 12236788887665554
Q ss_pred Cccccceeccccc
Q 046888 851 LPPSLKWLQAGNC 863 (1170)
Q Consensus 851 l~~~L~~L~i~~c 863 (1170)
..|+.|++..+
T Consensus 359 --~~l~~l~l~~n 369 (727)
T 4b8c_D 359 --HERRFIEINTD 369 (727)
T ss_dssp --CC---------
T ss_pred --cccceeEeecc
Confidence 46667776655
No 138
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.7e-12 Score=129.03 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=94.8
Q ss_pred cccccceeeccccccc-ccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCC
Q 046888 688 CLTNLEYLYINRCKRL-KRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQ 766 (1170)
Q Consensus 688 ~l~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 766 (1170)
..++|+.|++++|... +.+|..+..+++|+.|++++ |.++.+ ..+..+++|+.|++++|.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~------------------n~l~~~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN------------------VGLISV-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES------------------SCCCCC-SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC------------------CCCCCh-hhhccCCCCCEEECcCCc
Confidence 3467788888877654 46666666666665555544 444444 567778888888888888
Q ss_pred CCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC--cccCCCCCCCEEECcCCCCccccc----cccCCCCCCEEEec
Q 046888 767 LPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRENNFESLPV----SIKQLSRLKRLDLS 840 (1170)
Q Consensus 767 ~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~ 840 (1170)
+.. .+|.. +.++++|+.|+|++|.++.+| ..+..+++|+.|+|++|.++.+|. .+..+++|+.|+++
T Consensus 83 l~~------~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 83 IFG------GLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CCS------CCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred Cch------HHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 764 23332 556888888888888888876 678888888888888888888776 67888888888888
Q ss_pred CCC
Q 046888 841 NCS 843 (1170)
Q Consensus 841 ~c~ 843 (1170)
+|.
T Consensus 156 ~n~ 158 (168)
T 2ell_A 156 DRE 158 (168)
T ss_dssp ETT
T ss_pred CCC
Confidence 886
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=1.2e-10 Score=135.90 Aligned_cols=305 Identities=14% Similarity=0.087 Sum_probs=180.5
Q ss_pred CCCccccchhHHHHHHHHhhc----CCCCeEEEEEEecCCChHHHHHHHHHHHHhccC-CceEEEEechhhhhcCcCHHH
Q 046888 183 SSKGLVGLSSRIECIKSLLCT----GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-EGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
.++.++||+.+++++..++.. .....+.+.|+|++|+||||||+.+++...... ...+++. .........
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-----~~~~~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-----GFIYRNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-----TTTCCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-----CccCCCHHH
Confidence 447899999999999988864 222334899999999999999999999876542 2344554 334455667
Q ss_pred HHHHHHHHHhcCcccCC--CCChhHHHHHHhc--CCCeEEEEeCCCC--hHHHHHHHcccCCCC----CCcEEEEEeCCh
Q 046888 258 LHKQVVSLLLGERLETG--GPNIPAYALERLR--RTKVFMVLDDVSE--FEQLKYLVGWLDGFC----PGSRIVVTTRDK 327 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~--~~~l~~~l~~~L~--~kk~LlVLDdv~~--~~~~~~l~~~~~~~~----~gsrIIiTTR~~ 327 (1170)
+...++..+.......+ ...+...+.+.+. +++.+||||+++. .+.+..|...+.... .+..||+||++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 77777776643221111 1122223333333 5688999999976 344555554443322 366788888776
Q ss_pred hHHHHhCC-----CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHh---------CCChhHHHHHHHH
Q 046888 328 QVLRKQGV-----KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYA---------EGNPLALEVLGSS 393 (1170)
Q Consensus 328 ~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~---------~GlPLAl~~lg~~ 393 (1170)
........ -....+.+++++.++..+++...+........-..+....+++++ +|.|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 43222110 001379999999999999998876431111112234567788888 7887554433222
Q ss_pred -hc-----C---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhccccc---CC--CCHHHHHH----H
Q 046888 394 -LQ-----Q---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFF---KG--EGKDRVLM----L 455 (1170)
Q Consensus 394 -L~-----~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~----l 455 (1170)
.. + .+.+....++...... .+.-.+..|+.+++.++..++.+. .+ .....+.. +
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~--------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFG--------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCC--------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhh--------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1 2334444444333211 123345678888898888888664 22 23333322 2
Q ss_pred HhhCCC------CHHHHHHHHHhcCCcEEe-C-------CeEE-------ehHHHHHHHHHHHhhh
Q 046888 456 LHDRQY------NVTQALSVLIDKSLIIEH-N-------NRLH-------MHELLQEMGQEIVRQE 500 (1170)
Q Consensus 456 ~~~~~~------~~~~~l~~L~~~sLi~~~-~-------~~~~-------mHdll~~~~~~i~~~e 500 (1170)
....+. .....++.|.++++|... . +++. .|++++.+...+..+|
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 222222 134668899999999874 2 2221 4677777776666554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=5.6e-13 Score=167.86 Aligned_cols=123 Identities=22% Similarity=0.280 Sum_probs=61.5
Q ss_pred cCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCcccccCCCcccccccccccccccceeec
Q 046888 619 NLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYI 697 (1170)
Q Consensus 619 ~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L 697 (1170)
++..|.+...+..+..+.+|+.|+|++|.+. .+|. +..+++|+.|+|+ +|.|..+|..+++|++|++|+|
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls--------~N~l~~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLN--------GNSLTELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCT--------TSCCSCCCGGGGGGTTCCEEEC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEee--------CCcCcccChhhhCCCCCCEEeC
Confidence 3444444444555666677777777776644 3332 3334444433333 3444566666666666666666
Q ss_pred ccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCC
Q 046888 698 NRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPH 769 (1170)
Q Consensus 698 ~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 769 (1170)
++|... .+|..+++|++|++|+|++ |.++.+|..|.++++|+.|+|++|.+.+
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFD------------------NMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCS------------------SCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCC------------------CCCCccChhhhcCCCccEEeCCCCccCC
Confidence 666533 5566666555555544443 3445566666666666666666666553
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=8.8e-12 Score=124.21 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=64.6
Q ss_pred cccceeeccccccc-ccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCCCCC
Q 046888 690 TNLEYLYINRCKRL-KRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLP 768 (1170)
Q Consensus 690 ~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~ 768 (1170)
++|+.|++++|... +.+|..++.+++|+.|++++| .++.+ ..+..+++|+.|++++|.+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n------------------~l~~~-~~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV------------------GLTSI-ANLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS------------------CCCCC-TTCCCCTTCCEEECCSSCCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC------------------CCCCc-hhhhcCCCCCEEECCCCccc
Confidence 45666666665543 355554455555544444443 22222 34455555556666555554
Q ss_pred CcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC--cccCCCCCCCEEECcCCCCccccc----cccCCCCCCEEEec
Q 046888 769 HLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP--EEIGCLPSLEWLELRENNFESLPV----SIKQLSRLKRLDLS 840 (1170)
Q Consensus 769 ~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~ 840 (1170)
. .+|. .+..+++|+.|++++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 78 ~------~~~~-~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 78 G------GLEV-LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp S------CTHH-HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred c------hHHH-HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 3 1222 1344555666666666555543 455555666666666665555543 35555556555554
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2e-11 Score=125.43 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=84.5
Q ss_pred cccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCEEEccCC
Q 046888 686 VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGTLGLERS 765 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~ 765 (1170)
+.++.+|+.|++++|... .+|. +..+ ++.|+.|++++|.++.+ ..+..+++|+.|+|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~-----------------~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGAT-----------------LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGG-----------------TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhc-----------------CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC
Confidence 455667777777776432 3332 2222 22344555555566655 45677777777777777
Q ss_pred CCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc--ccCCCCCCCEEECcCCCCcccccc----ccCCCCCCEEEe
Q 046888 766 QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE--EIGCLPSLEWLELRENNFESLPVS----IKQLSRLKRLDL 839 (1170)
Q Consensus 766 ~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~--~l~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~L 839 (1170)
.+. .+|+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.++.+|.. +..+++|+.|++
T Consensus 75 ~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 75 RIC-------RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCC-------EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccc-------ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 765 3444434667777777777777777765 677777777777777777777764 677777777777
Q ss_pred cCCC
Q 046888 840 SNCS 843 (1170)
Q Consensus 840 ~~c~ 843 (1170)
++|.
T Consensus 148 ~~n~ 151 (176)
T 1a9n_A 148 QKVK 151 (176)
T ss_dssp EECC
T ss_pred CcCC
Confidence 7765
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.9e-10 Score=124.52 Aligned_cols=189 Identities=15% Similarity=0.092 Sum_probs=120.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCce---------------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGK--------------------- 239 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~--------------------- 239 (1170)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.+...+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 4445679999999999999987543 235789999999999999999998775433210
Q ss_pred EEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCC
Q 046888 240 CFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPG 317 (1170)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~g 317 (1170)
..+. .. .........+++..+.. ....+++.+||+||++. .+.++.+...+.....+
T Consensus 98 ~~~~-----~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~ 156 (250)
T 1njg_A 98 IEID-----AA-SRTKVEDTRDLLDNVQY---------------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 156 (250)
T ss_dssp EEEE-----TT-CGGGHHHHHHHHHSCCC---------------SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT
T ss_pred EEec-----Cc-ccccHHHHHHHHHHhhh---------------chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc
Confidence 1110 00 00000111111111000 01235679999999965 45566666655555567
Q ss_pred cEEEEEeCChhHH-HHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 046888 318 SRIVVTTRDKQVL-RKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSL 394 (1170)
Q Consensus 318 srIIiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 394 (1170)
.++|+||+..... ... ......+++++++.++..+++...+....... ..+....++++++|+|..+..+...+
T Consensus 157 ~~~i~~t~~~~~~~~~l-~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 157 VKFLLATTDPQKLPVTI-LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEEEEESCGGGSCHHH-HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEEEEeCChHhCCHHH-HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899988765321 111 11126899999999999999998875433221 23456789999999999888776543
No 144
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=2.9e-11 Score=123.11 Aligned_cols=124 Identities=24% Similarity=0.336 Sum_probs=105.1
Q ss_pred hccccEEEccCcCCc--ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCC
Q 046888 731 LESLKKINLGRTTVT--ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGC 807 (1170)
Q Consensus 731 ~~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~ 807 (1170)
|+.|+.|++++|.++ .+|..+..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.++. +|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-------~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-------V--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-------C--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-------h--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 556788888888888 889889999999999999999864 2 228889999999999999998 7777778
Q ss_pred CCCCCEEECcCCCCcccc--ccccCCCCCCEEEecCCCCCCCCCC-------Cccccceecccccc
Q 046888 808 LPSLEWLELRENNFESLP--VSIKQLSRLKRLDLSNCSMLQSIPE-------LPPSLKWLQAGNCK 864 (1170)
Q Consensus 808 l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~-------l~~~L~~L~i~~c~ 864 (1170)
+++|+.|+|++|+++.+| ..+..+++|+.|+|++|+.. .+|. ..++|+.|++.+|.
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence 999999999999999887 68999999999999999854 4443 23678888888775
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=5.9e-11 Score=135.21 Aligned_cols=225 Identities=14% Similarity=0.128 Sum_probs=112.3
Q ss_pred CCCeeEEEecCCCCC--CCCCCCCCCcCccccCCCCCcccccc-cccc--------cccceeecCCCCCCCccCCC--CC
Q 046888 590 PEKLRYLHLHKYPLR--TLPSNFKPKNLIELNLPFSKVVQIWE-GKKK--------AFKLKSINLSHSQYLIRIPD--PS 656 (1170)
Q Consensus 590 ~~~Lr~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~--------l~~L~~L~Ls~~~~l~~~p~--~~ 656 (1170)
.++|+.|+|++|.+. ..+.. ....+..+.+..+ .+|. .+.. +.+|+.|+|.+ . +..++. |.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccc-ccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhh
Confidence 348999999999987 22221 1122344444444 3442 3455 89999999998 4 445554 88
Q ss_pred CCCccccccccCCcccccCCCccccccc-ccccccccceeecccccc---cccc-cccccCCCccc-EEecCCCCCchh-
Q 046888 657 EAPNLERINLWNCTHLNLCDTAIEEVPS-SVECLTNLEYLYINRCKR---LKRV-STSICKLKSLI-WLCLNECLNLES- 729 (1170)
Q Consensus 657 ~l~~L~~L~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~---l~~l-p~~i~~L~~L~-~L~l~~c~~l~~- 729 (1170)
++++|+.|++.+ |.+..++. .+..+.++..+.+..... ...+ +..+.++.+|+ .+.+.....+..
T Consensus 122 ~~~~L~~l~l~~--------n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~ 193 (329)
T 3sb4_A 122 GCDNLKICQIRK--------KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDE 193 (329)
T ss_dssp TCTTCCEEEBCC--------SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHH
T ss_pred cCcccceEEcCC--------CCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHH
Confidence 888888888876 33344443 355556666665544211 0011 11222333444 333332222211
Q ss_pred ------------------------------hhccccEEEccCcCCcccCc-cccCCCCCCEEEccCCCCCCcCcCCcccC
Q 046888 730 ------------------------------FLESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLP 778 (1170)
Q Consensus 730 ------------------------------~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp 778 (1170)
.+..|+.|++++|.++.+|. .|.++++|+.|+|..| +. .++
T Consensus 194 ~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-------~I~ 265 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-------TIG 265 (329)
T ss_dssp HHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-------EEC
T ss_pred HhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-------eeh
Confidence 12335555555555555443 3444555555555443 11 344
Q ss_pred ccccCCCCCCC-EEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCccccc-cccCCCCCCEE
Q 046888 779 ASLLSGLFSLN-WLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLPV-SIKQLSRLKRL 837 (1170)
Q Consensus 779 ~~~l~~l~~L~-~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L 837 (1170)
..+|.++.+|+ .|+|.+ +++.++ ..+.++++|+.|+|++|+++.++. .+.++++|+.|
T Consensus 266 ~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 266 QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 44455555555 555544 444432 344445555555555555554432 34444455444
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=3.2e-11 Score=120.07 Aligned_cols=121 Identities=25% Similarity=0.365 Sum_probs=100.6
Q ss_pred hccccEEEccCcCCc--ccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-CCcccCC
Q 046888 731 LESLKKINLGRTTVT--ELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-IPEEIGC 807 (1170)
Q Consensus 731 ~~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-ip~~l~~ 807 (1170)
++.|+.|++++|.++ .+|..+..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.++. +|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------I--ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-------C--TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-------c--hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 466888888888888 889989999999999999999864 2 228889999999999999998 7887888
Q ss_pred CCCCCEEECcCCCCcccc--ccccCCCCCCEEEecCCCCCCCCCC----C---ccccceeccc
Q 046888 808 LPSLEWLELRENNFESLP--VSIKQLSRLKRLDLSNCSMLQSIPE----L---PPSLKWLQAG 861 (1170)
Q Consensus 808 l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~----l---~~~L~~L~i~ 861 (1170)
+++|+.|++++|.++.+| ..+..+++|+.|++++|+. ..+|. . .++|+.|++.
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 999999999999999875 7899999999999999974 44443 1 2456665553
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=121.76 Aligned_cols=106 Identities=24% Similarity=0.365 Sum_probs=92.6
Q ss_pred ccccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCC
Q 046888 732 ESLKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPS 810 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~ 810 (1170)
..|+.|++++|.++.+|..+.++++|+.|+|++|.+. .++...+.++++|+.|+|++|.++.++ ..+..+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-------~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-------TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-------EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 4577888888899999999999999999999999986 355555889999999999999999976 46889999
Q ss_pred CCEEECcCCCCccccc-cccCCCCCCEEEecCCCC
Q 046888 811 LEWLELRENNFESLPV-SIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 811 L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~ 844 (1170)
|+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999998886 478899999999999984
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1.7e-10 Score=120.23 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=90.6
Q ss_pred cccEEEccCcCCcccCcc--ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCC
Q 046888 733 SLKKINLGRTTVTELPSS--FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLP 809 (1170)
Q Consensus 733 ~L~~L~L~~~~i~~lp~~--l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~ 809 (1170)
.|+.|++++|.++.++.. +..+++|++|+|++|.+.. +++..+.++++|+.|+|++|+++.++ ..+..++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-------IEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-------BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-------cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 467777777888888763 8899999999999999874 43334889999999999999999865 4588999
Q ss_pred CCCEEECcCCCCccc-cccccCCCCCCEEEecCCCCCCCC
Q 046888 810 SLEWLELRENNFESL-PVSIKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 810 ~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l 848 (1170)
+|+.|+|++|+++.+ |..+..+++|+.|+|++|+.....
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999999999999965 778899999999999999865543
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.2e-10 Score=121.39 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=103.3
Q ss_pred eEEEecCCCCCCCCCCCCCCcCccccCCCCCccccccc--ccccccceeecCCCCCCCccCCC-CCCCCccccccccCCc
Q 046888 594 RYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEG--KKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCT 670 (1170)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~ 670 (1170)
++|+++++.++.+|..+. .+|++|++++|.+..++.. +..+++|++|+|++|.+....|. +..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-- 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS--
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC--
Confidence 678899999999988663 3899999999999988764 78999999999999998777665 78888888887766
Q ss_pred ccccCCCcccccccc-cccccccceeecccccccccccccccCCCcccEEecCCCC
Q 046888 671 HLNLCDTAIEEVPSS-VECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL 725 (1170)
Q Consensus 671 ~L~l~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~ 725 (1170)
|.+..++.. +..+++|++|+|++|...+..|..+..+++|+.|++++++
T Consensus 88 ------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 ------NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ------CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ------CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 566777654 8899999999999998888888889999999999998875
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=3e-10 Score=118.36 Aligned_cols=123 Identities=17% Similarity=0.177 Sum_probs=99.7
Q ss_pred eEEEecCCCCCCCCCCCCCCcCccccCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccCCccc
Q 046888 594 RYLHLHKYPLRTLPSNFKPKNLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWNCTHL 672 (1170)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~L 672 (1170)
++++++++.++.+|..+ +.+|++|+|++|.++.+|..+..+++|++|+|++|.+....+. |.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~---- 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY---- 87 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS----
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC----
Confidence 46888899999998765 4689999999999999998899999999999999987665554 78888888877766
Q ss_pred ccCCCccccccc-ccccccccceeecccccccccccccccCCCcccEEecCCCC
Q 046888 673 NLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECL 725 (1170)
Q Consensus 673 ~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~ 725 (1170)
|.+..+|. .+..+++|++|+|++|......+..+..+++|+.|++++++
T Consensus 88 ----N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 ----NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ----SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ----CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 56677765 58899999999999987654444467889999999988764
No 151
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=8.7e-11 Score=120.62 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCeeEEEecCCCCCCCCCCCCCC-cCccccCCCCCcccccccccccccceeecCCCCCCCccCCC-CCCCCccccccccC
Q 046888 591 EKLRYLHLHKYPLRTLPSNFKPK-NLIELNLPFSKVVQIWEGKKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWN 668 (1170)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~-~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~ 668 (1170)
.+|+.|++++|.++.+|....+. +|++|++++|.+..+ ..+..+++|++|+|++|.+....+. +..+++|+.|+|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 36777777777777776544444 777777777777776 5677777788888887775544334 35666666665554
Q ss_pred CcccccCCCccccccc--ccccccccceeeccccccccccccc----ccCCCcccEEecCCCC
Q 046888 669 CTHLNLCDTAIEEVPS--SVECLTNLEYLYINRCKRLKRVSTS----ICKLKSLIWLCLNECL 725 (1170)
Q Consensus 669 c~~L~l~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~c~ 725 (1170)
|.+..+|. .+..+++|+.|++++|... .+|.. ++.+++|+.|+++++.
T Consensus 98 --------N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 --------NSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp --------CCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred --------CcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 45566666 6778888888888888643 55653 7778888888877764
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=2.9e-09 Score=113.35 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=118.6
Q ss_pred CCCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEEechhhhhcCcCHHHH
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
.|.....++|++..++++..++.... .+.+.|+|.+|+|||++|+.+++.+... +...+...+ .....+...+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 85 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERGIDVV 85 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE----TTCTTCHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec----cccccChHHH
Confidence 34455679999999999999987543 2348999999999999999999986443 222222221 2222333332
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChhH-HHHhCC
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDKQV-LRKQGV 335 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~~~ 335 (1170)
...+ ....... .....++.+||+||++.. +..+.+...+.....+.++|+||+.... .....
T Consensus 86 ~~~~-~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~- 150 (226)
T 2chg_A 86 RHKI-KEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ- 150 (226)
T ss_dssp HHHH-HHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HHHH-HHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH-
Confidence 2222 2211100 011356889999999763 4455555555445567889999876532 11111
Q ss_pred CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046888 336 KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLG 391 (1170)
Q Consensus 336 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 391 (1170)
.....+++++++.++..+++...+...... -..+....+++.++|+|..+..+.
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112589999999999999998887543322 113455678899999998655443
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=6.9e-10 Score=113.94 Aligned_cols=110 Identities=26% Similarity=0.418 Sum_probs=85.7
Q ss_pred ccccEEEccCcCCcccCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCC
Q 046888 732 ESLKKINLGRTTVTELPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLP 809 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~ 809 (1170)
..|+.|++++|.++.+|. .+..+++|++|++++|.+. .++...+.++++|+.|+|++|.++.+|.. +..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-------SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-------EeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 346667777777777765 4678889999999988876 45555577888999999999998887654 67888
Q ss_pred CCCEEECcCCCCcccccc-ccCCCCCCEEEecCCCCCCCC
Q 046888 810 SLEWLELRENNFESLPVS-IKQLSRLKRLDLSNCSMLQSI 848 (1170)
Q Consensus 810 ~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~l 848 (1170)
+|+.|+|++|+++.+|.. +..+++|+.|+|++|+.....
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999999988888765 477889999999998755443
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1.4e-09 Score=111.55 Aligned_cols=126 Identities=24% Similarity=0.357 Sum_probs=93.1
Q ss_pred cccCCCcccccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCc-c
Q 046888 672 LNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPS-S 750 (1170)
Q Consensus 672 L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~-~ 750 (1170)
++++++.+..+|..+. ++|+.|++++|...+..+..++.+++|++|++++ |.++.+|. .
T Consensus 12 l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------n~l~~~~~~~ 71 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ------------------NQIQSLPDGV 71 (177)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS------------------SCCCCCCTTT
T ss_pred EEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC------------------CcceEeChhH
Confidence 3445566677775543 6888888888775543334456666666665554 45565654 4
Q ss_pred ccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCCEEECcCCCCccc
Q 046888 751 FENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLEWLELRENNFESL 824 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~~L~L~~n~l~~l 824 (1170)
+..+++|+.|+|++|.+. .++...+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+...
T Consensus 72 ~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQ-------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCccCEEECCCCCcc-------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 688999999999999876 35555578899999999999999998765 47899999999999988743
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.3e-09 Score=111.38 Aligned_cols=103 Identities=25% Similarity=0.361 Sum_probs=89.8
Q ss_pred ccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCC
Q 046888 734 LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLE 812 (1170)
Q Consensus 734 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~ 812 (1170)
-+.++++++.++.+|..+. ++|+.|+|++|.+.. +++..+.++++|+.|+|++|+|+.+|.. +..+++|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-------cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 3678889999999998775 899999999999864 5444588999999999999999998875 58899999
Q ss_pred EEECcCCCCcccccc-ccCCCCCCEEEecCCCCC
Q 046888 813 WLELRENNFESLPVS-IKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 813 ~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l 845 (1170)
.|+|++|+|+.+|.. +..+++|+.|+|++|+..
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999999999865 889999999999999843
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.7e-09 Score=110.13 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=90.7
Q ss_pred ccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCCCCC
Q 046888 734 LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLPSLE 812 (1170)
Q Consensus 734 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~~L~ 812 (1170)
.+.++++++.++.+|..+. ++|+.|+|++|.+.. +++..+.++++|+.|+|++|+|+.+|.. +..+++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~-------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITK-------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC-------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCc-------cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 5788999999999998774 899999999999874 5444588999999999999999998765 58999999
Q ss_pred EEECcCCCCccccc-cccCCCCCCEEEecCCCCCCC
Q 046888 813 WLELRENNFESLPV-SIKQLSRLKRLDLSNCSMLQS 847 (1170)
Q Consensus 813 ~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~ 847 (1170)
.|+|++|+|+.+|. .+..+++|+.|+|++|+....
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999999999876 488999999999999985433
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=3e-12 Score=134.37 Aligned_cols=130 Identities=24% Similarity=0.300 Sum_probs=76.8
Q ss_pred cccccccccccccceeecccccccccccccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCE
Q 046888 680 EEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGT 759 (1170)
Q Consensus 680 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 759 (1170)
+.+|..++.+++|++|++++|... .+| .+.++++|+.|+++ +|.++.+|..+..+++|+.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~------------------~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLG------------------RNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEE------------------EEEECSCSSHHHHHHHCSE
T ss_pred hhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECC------------------CCCcccccchhhcCCcCCE
Confidence 556666777777777777777533 355 45555555544444 3444555555555566666
Q ss_pred EEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc--ccCCCCCCCEEECcCCCCcccccc----------
Q 046888 760 LGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE--EIGCLPSLEWLELRENNFESLPVS---------- 827 (1170)
Q Consensus 760 L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~--~l~~l~~L~~L~L~~n~l~~lp~~---------- 827 (1170)
|++++|.+.. +|. +..+++|+.|+|++|.++.++. .+..+++|+.|++++|.+...+..
T Consensus 98 L~L~~N~l~~-------l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 98 LWISYNQIAS-------LSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp EEEEEEECCC-------HHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred EECcCCcCCc-------CCc--cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 6666666542 221 4555666666666666666543 566666777777777766533211
Q ss_pred -ccCCCCCCEEE
Q 046888 828 -IKQLSRLKRLD 838 (1170)
Q Consensus 828 -l~~l~~L~~L~ 838 (1170)
+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 45566666665
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.89 E-value=3.5e-08 Score=114.86 Aligned_cols=215 Identities=13% Similarity=0.143 Sum_probs=139.6
Q ss_pred CeeEEEecCCCCCCCCCC-CCCCcCccccCCCCCccccc-ccccccccceeecCCCCCCCccCCCCCCCCccccccccCC
Q 046888 592 KLRYLHLHKYPLRTLPSN-FKPKNLIELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNC 669 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 669 (1170)
+|+.+.+..+ ++.++.. |.-.+|+.+.++. .++.+. ..+..+.+|+.++|++|.+...........+|+.+.|..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~- 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV- 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-
Confidence 5777776654 6666443 4334677777775 566665 346777888888888776443333322346676666653
Q ss_pred cccccCCCccccccc-ccccccccceeeccccccccccccc-ccCCCcccEEecCCCCCchhhhccccEEEccCcCCccc
Q 046888 670 THLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRLKRVSTS-ICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTEL 747 (1170)
Q Consensus 670 ~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~l 747 (1170)
.+..++. .+.++++|+.+++.++ +..++.. +.+ .+|+.+.+. +.++.+
T Consensus 213 --------~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-------------------~~i~~I 262 (401)
T 4fdw_A 213 --------TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-------------------NGVTNI 262 (401)
T ss_dssp --------TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-------------------TTCCEE
T ss_pred --------chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-------------------CCccEE
Confidence 1355554 4677888888888753 3444432 322 455555442 234444
Q ss_pred C-ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc
Q 046888 748 P-SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLP 825 (1170)
Q Consensus 748 p-~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp 825 (1170)
+ ..|.++++|+.+.+.++..... ....++..+|.++++|+.++|. ++++.++ ..+.++++|+.|.|..+ ++.++
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~--~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDD--PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCC--TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred ChhHhhCCCCCCEEEeCCccccCC--cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 3 4678888999999888765411 1235777778899999999998 4577764 46778899999999654 77664
Q ss_pred -ccccCCCCCCEEEecCCCC
Q 046888 826 -VSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 826 -~~l~~l~~L~~L~L~~c~~ 844 (1170)
..+.++ +|+.|++.+|..
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSC
T ss_pred HHhCCCC-CCCEEEEcCCCC
Confidence 467778 999999998863
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=4.3e-09 Score=119.66 Aligned_cols=236 Identities=16% Similarity=0.142 Sum_probs=134.7
Q ss_pred CCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-C--------CCcCccccCCC
Q 046888 553 MPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-K--------PKNLIELNLPF 622 (1170)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~--------~~~L~~L~L~~ 622 (1170)
+++|+.|+++++... ...... ..++ .++.+.+..+ .+|.. | + +.+|+.|+|++
T Consensus 48 l~~L~~LdLs~n~i~-----------~~~~~~--~~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~ 110 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-----------MYSGKA--GTYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE 110 (329)
T ss_dssp CTTCCEEEEEEEEEC-----------CEEESS--SSSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT
T ss_pred hccCeEEecCcceeE-----------EecCcc--cccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECCc
Confidence 889999999876421 001111 1122 2444554444 34433 3 5 78888888888
Q ss_pred CCccccccc-ccccccceeecCCCCCCCccCCC-CCCCCccccccccC-----------------Ccccc--cCCCcccc
Q 046888 623 SKVVQIWEG-KKKAFKLKSINLSHSQYLIRIPD-PSEAPNLERINLWN-----------------CTHLN--LCDTAIEE 681 (1170)
Q Consensus 623 ~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~-----------------c~~L~--l~~n~i~~ 681 (1170)
.++.++.. +..+++|+.|+|++|.+....+. |..+.++..+.+.. |..|. +.-.....
T Consensus 111 -~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~ 189 (329)
T 3sb4_A 111 -KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK 189 (329)
T ss_dssp -TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred -cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence 77777644 67788888888888775433333 55555555554432 11110 00000001
Q ss_pred ccccc----ccccccceeecccccccccccccccCCCcccEEecCCCCCchhh-------hccccEEEccCcCCcccCc-
Q 046888 682 VPSSV----ECLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNLESF-------LESLKKINLGRTTVTELPS- 749 (1170)
Q Consensus 682 lp~~i----~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~~-------~~~L~~L~L~~~~i~~lp~- 749 (1170)
++..+ -...++..+.+.++-...........+++|+.|+++++. +..+ ..+|+.|++.+| ++.++.
T Consensus 190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence 11110 012233333333221111111001125566666666542 2222 223666677666 666754
Q ss_pred cccCCCCCC-EEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCCCCCEEEC
Q 046888 750 SFENIEGLG-TLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLPSLEWLEL 816 (1170)
Q Consensus 750 ~l~~l~~L~-~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L 816 (1170)
.|.++++|+ .|.+.. .+. .++..+|.++++|+.|++++|+++.++. .+.++++|+.|..
T Consensus 268 aF~~~~~L~~~l~l~~-~l~-------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA-SVT-------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT-TCC-------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc-cce-------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 688999999 999987 433 6777779999999999999999999765 7888999999864
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=2e-08 Score=113.66 Aligned_cols=188 Identities=15% Similarity=0.209 Sum_probs=116.5
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-CCc-eEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-FEG-KCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~~~~~~~~~~l 258 (1170)
|.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+.+. .+...+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-----ASDDRGIDVV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-----TTSCCSHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-----CccccChHHH
Confidence 3445679999999999999986543 2338999999999999999999986432 221 22222 2222232222
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHh-cCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCChhH-HHHhC
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERL-RRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDKQV-LRKQG 334 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L-~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~~ 334 (1170)
++++..+.... ..+ .+++.++|+||++. .+..+.|...+....++.++|+||+...- .....
T Consensus 90 -~~~~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 90 -RNQIKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp -HTHHHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 22222221100 011 34588999999976 34444454444444567788888876532 12211
Q ss_pred CCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHHHHHH
Q 046888 335 VKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALEVLGS 392 (1170)
Q Consensus 335 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg~ 392 (1170)
. ....+++++++.++..+++...+...+.. -..+....+++.++|.|. |+..+..
T Consensus 156 s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 156 S-QCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp T-TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h-hceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 12589999999999999998877433221 113456788999999995 4454443
No 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=1.1e-11 Score=130.14 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=105.2
Q ss_pred cccccccceeecccccccccccc------cccCCCcccEEecCCCCCchhhhccccEEEccCcCCcccCccccCCCCCCE
Q 046888 686 VECLTNLEYLYINRCKRLKRVST------SICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTELPSSFENIEGLGT 759 (1170)
Q Consensus 686 i~~l~~L~~L~L~~~~~l~~lp~------~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 759 (1170)
+.....++.++++++...+.+|. .++.+++|+.|+ +++|.++.+| .+..+++|+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~------------------ls~n~l~~l~-~~~~l~~L~~ 74 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA------------------LSTNNIEKIS-SLSGMENLRI 74 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEE------------------CSEEEESCCC-CHHHHTTCCE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEE------------------CCCCCCcccc-ccccCCCCCE
Confidence 45556677777777665555554 555555555554 4556677777 8889999999
Q ss_pred EEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCCCccccc--cccCCCCCCEE
Q 046888 760 LGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENNFESLPV--SIKQLSRLKRL 837 (1170)
Q Consensus 760 L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L 837 (1170)
|++++|.+. .+|.. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|+++.+|. .+..+++|+.|
T Consensus 75 L~l~~n~l~-------~l~~~-~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 75 LSLGRNLIK-------KIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEEEEEEEC-------SCSSH-HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred EECCCCCcc-------cccch-hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 999999876 34543 566789999999999999987 68889999999999999998764 78999999999
Q ss_pred EecCCCCCCCCC
Q 046888 838 DLSNCSMLQSIP 849 (1170)
Q Consensus 838 ~L~~c~~l~~lp 849 (1170)
++++|+....+|
T Consensus 146 ~l~~N~l~~~~~ 157 (198)
T 1ds9_A 146 LLAGNPLYNDYK 157 (198)
T ss_dssp EECSCHHHHHHH
T ss_pred EecCCccccccc
Confidence 999998654443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=1.2e-07 Score=110.52 Aligned_cols=226 Identities=15% Similarity=0.213 Sum_probs=142.7
Q ss_pred CeeEEEecCCCCCCCCCC-CCCCcCccccCCCCCccccccc-ccccccceeecCCCCCCCccCCC--CCCCCcccccccc
Q 046888 592 KLRYLHLHKYPLRTLPSN-FKPKNLIELNLPFSKVVQIWEG-KKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLW 667 (1170)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~ 667 (1170)
.++.+.+.+ .++.++.. |.-.+|+.+.++.+ ++.+... +.+ .+|+.+.|..+ +..++. |.++++|+.++|.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecC
Confidence 444444433 34444332 32236777777665 6666544 333 46777777752 333333 6667777766665
Q ss_pred CCcccccCCCcccccccccccccccceeeccccccccccc-ccccCCCcccEEecCCCCCchhhhccccEEEccCcCCcc
Q 046888 668 NCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVS-TSICKLKSLIWLCLNECLNLESFLESLKKINLGRTTVTE 746 (1170)
Q Consensus 668 ~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~~~~~L~~L~L~~~~i~~ 746 (1170)
+ |.+..+|...-...+|+.+.+.++ +..++ ..+.++++|+.+.+.. .++.
T Consensus 189 ~--------n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-------------------~l~~ 239 (401)
T 4fdw_A 189 K--------TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-------------------NVST 239 (401)
T ss_dssp T--------SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT-------------------TCCE
T ss_pred C--------CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC-------------------CccC
Confidence 4 444666665433567777777643 33333 3455566666665543 2344
Q ss_pred cCc-cccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCC-----CC-CcccCCCCCCCEEECcCC
Q 046888 747 LPS-SFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALT-----AI-PEEIGCLPSLEWLELREN 819 (1170)
Q Consensus 747 lp~-~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~-----~i-p~~l~~l~~L~~L~L~~n 819 (1170)
++. .|.+ .+|+.+.|..+ + ..++..+|.++++|+.+++.++.+. .+ +..+.++++|+.+.|. +
T Consensus 240 I~~~aF~~-~~L~~i~lp~~-i-------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKLPNG-V-------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp ECTTTTTT-CCCSEEEEETT-C-------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred cccccccc-CCccEEEeCCC-c-------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 443 3444 78999999543 2 3677777999999999999998765 34 4578889999999999 4
Q ss_pred CCcccc-ccccCCCCCCEEEecCCCCCCCCCC-Cc--cccceeccccc
Q 046888 820 NFESLP-VSIKQLSRLKRLDLSNCSMLQSIPE-LP--PSLKWLQAGNC 863 (1170)
Q Consensus 820 ~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~-l~--~~L~~L~i~~c 863 (1170)
+++.++ ..+.++++|+.|.|..+ ++.++. .+ .+|+.|.+.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCS
T ss_pred ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCC
Confidence 588775 46788999999999665 555543 11 26777777654
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=2.1e-07 Score=105.42 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=151.8
Q ss_pred CCCCCccccchhHHHHHHHHhhc---CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCT---GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|...+.++|++..++++..++.. .....+.|.|+|++|+|||++|+++++.....| .++. .........
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-----~~~~~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-----GPAIEKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-----TTTCCSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-----ccccCChHH
Confidence 34557899999999998887752 122346789999999999999999998774322 2222 111111111
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCC------------------CCC
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGF------------------CPG 317 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~g 317 (1170)
+...+. .. ..++.+|+||+++.. ...+.+...+... .++
T Consensus 80 ----l~~~l~----------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 ----LAAILA----------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----HHHHHT----------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----HHHHHH----------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 111111 00 135678999999764 2333333222111 124
Q ss_pred cEEEEEeCChhHHH-HhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcC
Q 046888 318 SRIVVTTRDKQVLR-KQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSLQQ 396 (1170)
Q Consensus 318 srIIiTTR~~~v~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~ 396 (1170)
.++|.||....... .....-...+.+++++.+|..+++...+...... -..+....++++++|+|-.+..+...+..
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 56776666432211 1101111589999999999999998877433221 12345678899999999887766554421
Q ss_pred ---------CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCC--CCHHHHHHHHhhCCCCHHH
Q 046888 397 ---------KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKG--EGKDRVLMLLHDRQYNVTQ 465 (1170)
Q Consensus 397 ---------~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~l~~~~~~~~~~ 465 (1170)
.+.+.....+..+ ...+..+++.++..+..++....+ .....+.+.+.-.......
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~-------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL-------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH-------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh-------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1233333333222 223456788888888776654333 3455555554322212223
Q ss_pred HHHH-HHhcCCcEEeCCeEEehHHHHH
Q 046888 466 ALSV-LIDKSLIIEHNNRLHMHELLQE 491 (1170)
Q Consensus 466 ~l~~-L~~~sLi~~~~~~~~mHdll~~ 491 (1170)
.++. +++.++|........+-+...+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHhHHHHHhcchhcCCccceecHHHHH
Confidence 2333 7889999877555555444433
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=2.8e-08 Score=101.51 Aligned_cols=90 Identities=26% Similarity=0.430 Sum_probs=76.3
Q ss_pred ccccEEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcc-cCCCC
Q 046888 732 ESLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEE-IGCLP 809 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~-l~~l~ 809 (1170)
..|+.|+|++|.++.+ |..+.++++|+.|+|++|.+. .+|...+.++++|+.|+|++|+|+.+|.. +..++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-------AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-------ccChhHhCCcchhhEEECCCCccceeCHHHhcccc
Confidence 3466777777888877 567899999999999999986 46666678999999999999999998875 88999
Q ss_pred CCCEEECcCCCCccccccc
Q 046888 810 SLEWLELRENNFESLPVSI 828 (1170)
Q Consensus 810 ~L~~L~L~~n~l~~lp~~l 828 (1170)
+|+.|+|++|.+...+..+
T Consensus 106 ~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 106 SLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp TCSEEECCSSCBCTTBGGG
T ss_pred CCCEEEeCCCCcccccccH
Confidence 9999999999998766433
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=6.7e-08 Score=109.58 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=115.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC-Cc-eEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-EG-KCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~~l 258 (1170)
|.....++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.... .. .+.+. .+...+...+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-----ASDERGINVI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-----TTCHHHHHTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-----ccccCchHHH
Confidence 4445679999999999999987543 33489999999999999999999864332 11 12221 1111111111
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChhH-HHHhCC
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDKQV-LRKQGV 335 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~~~ 335 (1170)
. ..+....... ....+++.++|+|+++.. +..+.|...+.....+.++|+||....- .....
T Consensus 94 ~-~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~- 158 (327)
T 1iqp_A 94 R-EKVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ- 158 (327)
T ss_dssp H-HHHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred H-HHHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH-
Confidence 1 1111111000 011256789999999753 4556666555555567888888876532 11110
Q ss_pred CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046888 336 KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGS 392 (1170)
Q Consensus 336 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~ 392 (1170)
.....+++++++.++..+++...+...... -..+....+++.++|.|..+..+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 112578999999999999998877433221 1234567788999999986554433
No 166
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=3.2e-08 Score=100.67 Aligned_cols=87 Identities=30% Similarity=0.450 Sum_probs=74.5
Q ss_pred ccccEEEccCcCCccc-CccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCc-ccCCCC
Q 046888 732 ESLKKINLGRTTVTEL-PSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPE-EIGCLP 809 (1170)
Q Consensus 732 ~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~-~l~~l~ 809 (1170)
..|+.|+|++|.|+.+ |..+..+++|+.|+|++|.+. .+|...+.++++|+.|+|++|+++.+|. .+..++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-------VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK 102 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-------ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCC
Confidence 4567777788889887 567899999999999999986 4666668899999999999999999876 588999
Q ss_pred CCCEEECcCCCCcccc
Q 046888 810 SLEWLELRENNFESLP 825 (1170)
Q Consensus 810 ~L~~L~L~~n~l~~lp 825 (1170)
+|+.|+|++|.+...+
T Consensus 103 ~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 103 SLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TCCEEECCSSCBCTTB
T ss_pred CCCEEEeCCCCCCCCc
Confidence 9999999999887444
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=4.8e-08 Score=111.89 Aligned_cols=102 Identities=26% Similarity=0.275 Sum_probs=87.2
Q ss_pred EEEccCc-CCcccCccccCCCCCCEEEccC-CCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCC
Q 046888 736 KINLGRT-TVTELPSSFENIEGLGTLGLER-SQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLE 812 (1170)
Q Consensus 736 ~L~L~~~-~i~~lp~~l~~l~~L~~L~L~~-~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~ 812 (1170)
.++++++ .++.+|. +..+++|+.|+|++ |.+. .++...+.++++|+.|+|++|+|+.++ ..+..+++|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ-------HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC-------EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC-------CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 4577777 8999999 99999999999996 8876 566666999999999999999999965 5679999999
Q ss_pred EEECcCCCCccccccccCCCCCCEEEecCCCCC
Q 046888 813 WLELRENNFESLPVSIKQLSRLKRLDLSNCSML 845 (1170)
Q Consensus 813 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 845 (1170)
.|+|++|+|+.+|..+.....|+.|+|.+|+..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 999999999999876544445999999999854
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=5.7e-09 Score=120.36 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=100.8
Q ss_pred ccccceeeccccccccccccc----cc-CCCcccEEecCCCCCch----h---hhccccEEEccCcCCccc-----Cccc
Q 046888 689 LTNLEYLYINRCKRLKRVSTS----IC-KLKSLIWLCLNECLNLE----S---FLESLKKINLGRTTVTEL-----PSSF 751 (1170)
Q Consensus 689 l~~L~~L~L~~~~~l~~lp~~----i~-~L~~L~~L~l~~c~~l~----~---~~~~L~~L~L~~~~i~~l-----p~~l 751 (1170)
+++|+.|+|++|......... +. ..++|+.|+|++|..-. . ...+|+.|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777777777644322222 22 22577777777774311 1 133578888888887632 2222
Q ss_pred -cCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcCCCCcc--
Q 046888 752 -ENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRENNFES-- 823 (1170)
Q Consensus 752 -~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~n~l~~-- 823 (1170)
...++|+.|+|++|.+.... ...++.. +..+++|++|+|++|.+++ ++..+...++|+.|+|++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAG--VAVLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHH--HHHHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HhcCCccceeeCCCCCCChHH--HHHHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 34678999999999875311 1122222 4667889999999998875 45667778899999999998873
Q ss_pred ---ccccccCCCCCCEEEecCCCC
Q 046888 824 ---LPVSIKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 824 ---lp~~l~~l~~L~~L~L~~c~~ 844 (1170)
++..+...++|++|+|++|+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCC
Confidence 445566778999999999974
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=1.1e-06 Score=101.46 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=114.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
|.....++|++..++.+...+..+. -...+.|+|.+|+||||+|+.+++.+....... ....+......
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~----------~~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----------ATPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC----------SSCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC----------CCCCcccHHHH
Confidence 3445679999999999999886543 234788999999999999999998774322100 00000000000
Q ss_pred HHHHH----Hhc-C-cccCCCCChhHHHHHHh-----cCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 261 QVVSL----LLG-E-RLETGGPNIPAYALERL-----RRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 261 ~ll~~----l~~-~-~~~~~~~~l~~~l~~~L-----~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
.+... +.. . ......+.+.. +.+.+ .+++.++|+||++. .+..+.|...+.....+..+|++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCHHH-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred HHhccCCCceEEecccccCCHHHHHH-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00000 000 0 00011222222 22222 34678999999965 345566665554445566777777644
Q ss_pred h-HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046888 328 Q-VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLG 391 (1170)
Q Consensus 328 ~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 391 (1170)
. +..... .....+++++++.++..+++...+-..+... ..+....+++.++|.|..+..+.
T Consensus 160 ~~l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 160 QKLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhCcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 2 222211 1126899999999999999988764322211 13445778999999998776554
No 170
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.53 E-value=1.1e-06 Score=98.94 Aligned_cols=180 Identities=11% Similarity=0.093 Sum_probs=113.5
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc-cCCc-eEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN-EFEG-KCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~~~~~~~~~~l 258 (1170)
|.....++|++..++.+..++..+ ....+.|+|++|+|||++|+.+++.+.. .+.. .+.+. .+...+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-----~~~~~~---- 81 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-----ASDERG---- 81 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-----TTSTTC----
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-----CccccC----
Confidence 444567999999999999988653 3334899999999999999999997632 2211 12222 111111
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHH-----h-cCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh-H
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALER-----L-RRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDKQ-V 329 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~-----L-~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~-v 329 (1170)
...+...+.+. + .+++.++|+|+++.. +..+.|...+....++.++|+||.... +
T Consensus 82 ----------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 82 ----------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (319)
T ss_dssp ----------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGS
T ss_pred ----------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 11111111111 1 256789999999753 445667666666666778888886553 2
Q ss_pred HHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 330 LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
...... ....+++++++.++..+++...+...+.. -..+....+++.++|.+..+..+
T Consensus 146 ~~~l~s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 146 IEPIQS-RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CHHHHT-TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred chHHHh-hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222111 12589999999999999998877433221 12345567888999998765443
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=5.3e-09 Score=120.64 Aligned_cols=74 Identities=26% Similarity=0.177 Sum_probs=51.6
Q ss_pred cCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcCCCC
Q 046888 747 LPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRENNF 821 (1170)
Q Consensus 747 lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~n~l 821 (1170)
++..+..+++|++|+|++|.+.... ...++.. +...++|+.|+|++|.+++ ++..+...++|+.|+|++|.|
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g--~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEG--LELLAAQ-LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHH--HHHHHHH-GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHH--HHHHHHH-HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3445567778888888888764310 1122222 5566789999999998885 445566778999999999988
Q ss_pred cc
Q 046888 822 ES 823 (1170)
Q Consensus 822 ~~ 823 (1170)
+.
T Consensus 252 ~~ 253 (372)
T 3un9_A 252 SS 253 (372)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 172
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=5.7e-07 Score=102.85 Aligned_cols=75 Identities=21% Similarity=0.153 Sum_probs=52.7
Q ss_pred cCCcccC-ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCCcccCCCCCCCEEECcCCC
Q 046888 742 TTVTELP-SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIPEEIGCLPSLEWLELRENN 820 (1170)
Q Consensus 742 ~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip~~l~~l~~L~~L~L~~n~ 820 (1170)
|.++.+| ..|..+++|+.|+|++|.+. .+++..|.++++|+.|+|++|+|+.+|..+....+|+.|+|.+|.
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 42 QHLQHLELRDLRGLGELRNLTIVKSGLR-------FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCEECGGGSCSCCCCSEEECCSSCCC-------EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCCCcChhHhccccCCCEEECCCCccc-------eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 3444444 35667777777777777765 344444778888888888888888877655444448999999888
Q ss_pred Ccc
Q 046888 821 FES 823 (1170)
Q Consensus 821 l~~ 823 (1170)
+..
T Consensus 115 ~~c 117 (347)
T 2ifg_A 115 LHC 117 (347)
T ss_dssp CCC
T ss_pred ccC
Confidence 774
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.42 E-value=1.3e-05 Score=91.05 Aligned_cols=257 Identities=12% Similarity=0.139 Sum_probs=143.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcC---CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTG---LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|.....++|++..++++..++... ....+.|.|+|++|+|||++|++++++....| +.+. .........
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-----~~~~~~~~~ 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-----APMIEKSGD 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-----GGGCCSHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-----chhccchhH
Confidence 345568999999999998888642 33455689999999999999999988764432 2222 111111111
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCC------------------CCC
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGF------------------CPG 317 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~g 317 (1170)
+.. .+ .. ..+..+|+||+++.. +....|...+... .++
T Consensus 97 ~~~-~~--------------------~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 LAA-IL--------------------TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp HHH-HH--------------------HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred HHH-HH--------------------Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 111 10 11 235678999999753 3333333222111 123
Q ss_pred cEEEEEeCChhH-HHHh--CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 046888 318 SRIVVTTRDKQV-LRKQ--GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSL 394 (1170)
Q Consensus 318 srIIiTTR~~~v-~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 394 (1170)
.++|.||..... .... ..+ ..+.+++++.++..+++...+-.... .-..+....+++.+.|+|-.+..+...+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~--~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFG--MQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRV 230 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcC--EEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 466666654322 1111 222 68999999999999999887743221 1223456678888999986554433221
Q ss_pred ------cC---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCCC--CHHHHHHHHhhCCCCH
Q 046888 395 ------QQ---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKGE--GKDRVLMLLHDRQYNV 463 (1170)
Q Consensus 395 ------~~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~l~~~~~~~~ 463 (1170)
.+ .+.+.....+.. +..+...++..+++.+..++-. .+. ....+...+.......
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~-------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl 296 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNS-------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTI 296 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHH-------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHH-------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHH
Confidence 11 123333332222 2223345666666666666554 322 3555555554322223
Q ss_pred HHHHH-HHHhcCCcEEe-CCeEEe
Q 046888 464 TQALS-VLIDKSLIIEH-NNRLHM 485 (1170)
Q Consensus 464 ~~~l~-~L~~~sLi~~~-~~~~~m 485 (1170)
...++ .|++.++|... .+++.-
T Consensus 297 ~~~l~~~l~~~gli~~~~~g~~~t 320 (338)
T 3pfi_A 297 EDVIEPYLLANGYIERTAKGRIAS 320 (338)
T ss_dssp HHTTHHHHHHTTSEEEETTEEEEC
T ss_pred HHHHhHHHHHcCceecCCCccccc
Confidence 33455 78899999877 444443
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=1.1e-05 Score=93.70 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=37.5
Q ss_pred ccccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-C-CCCcCcccc
Q 046888 542 GINLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-F-KPKNLIELN 619 (1170)
Q Consensus 542 ~l~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~ 619 (1170)
...+...+|.++.+|+.+.+... -..+......-..+|+.+++..+ ++.++.. | ++.+|+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--------------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--------------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence 34467788888888888877321 11222222233346777777543 5555443 2 566666666
Q ss_pred CCC
Q 046888 620 LPF 622 (1170)
Q Consensus 620 L~~ 622 (1170)
++.
T Consensus 124 ~p~ 126 (394)
T 4fs7_A 124 LPL 126 (394)
T ss_dssp CCT
T ss_pred ccC
Confidence 554
No 175
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.38 E-value=7.5e-06 Score=90.84 Aligned_cols=163 Identities=11% Similarity=0.123 Sum_probs=100.5
Q ss_pred ccccchhHHHHHHHHhhc--CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC-------ceEEEEechhhhhcCcCHH
Q 046888 186 GLVGLSSRIECIKSLLCT--GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE-------GKCFIENVREEIENGVGLV 256 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~~~~~ 256 (1170)
.+.||+.+++++...|.. ..+....+.|+|++|.|||++|+.+++++..... ..+++. .....+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-----c~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-----ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-----TTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-----ccccCCHH
Confidence 489999999999887763 2345678899999999999999999998854321 133443 33345566
Q ss_pred HHHHHHHHHHhcCcccCCCCChhHHHH---HHh---cCCCeEEEEeCCCCh---HHHHHHHcccCCCCCCcE--EEEEeC
Q 046888 257 HLHKQVVSLLLGERLETGGPNIPAYAL---ERL---RRTKVFMVLDDVSEF---EQLKYLVGWLDGFCPGSR--IVVTTR 325 (1170)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~l~~~l~---~~L---~~kk~LlVLDdv~~~---~~~~~l~~~~~~~~~gsr--IIiTTR 325 (1170)
.+...++.++.+..... ......+. +.+ .+++++++||+++.. +.+-.+..... ...++ ||.++.
T Consensus 96 ~~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n 171 (318)
T 3te6_A 96 ALYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGG 171 (318)
T ss_dssp HHHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEec
Confidence 78888888886653221 11122222 222 456799999999764 33333332111 12332 333343
Q ss_pred ChhH---------HHHhCCCCcceEeecCCCHhHHHHHHHHHHh
Q 046888 326 DKQV---------LRKQGVKDEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 326 ~~~v---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
+.+. ...++. ..+..++++.+|-.+++..++-
T Consensus 172 ~~d~~~~~L~~~v~SR~~~---~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 172 HNVTIREQINIMPSLKAHF---TEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp SSCCCHHHHHTCHHHHTTE---EEEECCCCCHHHHHHHHHHHHH
T ss_pred CcccchhhcchhhhccCCc---eEEEeCCCCHHHHHHHHHHHHH
Confidence 3211 112221 4789999999999999988863
No 176
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=4.3e-06 Score=86.17 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.....++||+..++++.+.+..+ ..+.+.|+|.+|+|||++|+++++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567999999999999988643 3466889999999999999999997644
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.37 E-value=9.1e-06 Score=92.98 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=115.6
Q ss_pred chhHHHHHHHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHH
Q 046888 158 PEAMLVEVIVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKA 227 (1170)
Q Consensus 158 ~e~~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~ 227 (1170)
.+...++.|..++..+. ++..-..++|.+..+++|.+.+.. .....+.|.|+|.+|+|||+||++
T Consensus 62 ~~~~~~~~i~~~i~~~~-----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG-----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp SCHHHHHHHHHHTBCCS-----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHH
T ss_pred CChHHHHHHHhhcccCC-----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHH
Confidence 45566777777665443 334456799999999999887742 113356799999999999999999
Q ss_pred HHHHHhccCCceEEEEechhhhhcCcCH-HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-----
Q 046888 228 LFNQISNEFEGKCFIENVREEIENGVGL-VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----- 301 (1170)
Q Consensus 228 v~~~~~~~F~~~~~~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----- 301 (1170)
+++..... ++..+..+......+. ....+.+ +...-..++.+|+||+++..
T Consensus 137 ia~~~~~~----~~~i~~~~l~~~~~g~~~~~~~~~-------------------~~~a~~~~~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 137 IASQSGAT----FFSISASSLTSKWVGEGEKMVRAL-------------------FAVARCQQPAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp HHHHTTCE----EEEEEGGGGCCSSTTHHHHHHHHH-------------------HHHHHHTCSEEEEEETHHHHTBC--
T ss_pred HHHHcCCe----EEEEehHHhhccccchHHHHHHHH-------------------HHHHHhcCCeEEEEeCchhhhccCC
Confidence 99876332 2222222211111111 1111111 11222356789999999432
Q ss_pred --------HHHHHHHcccCC----CCCCcEEEEEeCChhHH-HHh--CCCCcceEeecCCCHhHHHHHHHHHHhccCCCC
Q 046888 302 --------EQLKYLVGWLDG----FCPGSRIVVTTRDKQVL-RKQ--GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRP 366 (1170)
Q Consensus 302 --------~~~~~l~~~~~~----~~~gsrIIiTTR~~~v~-~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 366 (1170)
.....++..+.. ...+..||.||.....+ ... ... ..+.++..+.++..+++...+-.....
T Consensus 194 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~--~~i~i~~p~~~~r~~il~~~~~~~~~~- 270 (357)
T 3d8b_A 194 DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV--KRLYIPLPEASARKQIVINLMSKEQCC- 270 (357)
T ss_dssp ----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHHTSCBC-
T ss_pred CCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc--eEEEeCCcCHHHHHHHHHHHHhhcCCC-
Confidence 112333332221 12344566666543211 111 233 578899999999999998876332211
Q ss_pred hhHHHHHHHHHHHhCC-ChhHHHHHHH
Q 046888 367 EHLTVLSKKAVRYAEG-NPLALEVLGS 392 (1170)
Q Consensus 367 ~~~~~~~~~i~~~~~G-lPLAl~~lg~ 392 (1170)
-..+....+++.+.| .+-.+..+..
T Consensus 271 -l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 271 -LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp -CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred -ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 112345677888887 4556665544
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=8e-06 Score=90.38 Aligned_cols=181 Identities=18% Similarity=0.243 Sum_probs=104.3
Q ss_pred CCCCCccccchhHHHHHHHHhhcC-----------CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhh
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTG-----------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEI 249 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 249 (1170)
....+.++|++..+++|.+.+... ....+.+.|+|++|+|||+||+++++.....| +..+..+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHH
Confidence 345578999999999998877421 23456799999999999999999998764332 211222201
Q ss_pred hcCcCH-HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccC
Q 046888 250 ENGVGL-VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLD 312 (1170)
Q Consensus 250 ~~~~~~-~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~ 312 (1170)
....+. ......+ +......++.+|+||+++.. ..+..+...+.
T Consensus 89 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 89 KKFIGEGASLVKDI-------------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CCSTTHHHHHHHHH-------------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHH-------------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 111111 1111111 11223456789999999543 12333333322
Q ss_pred C--CCCCcEEEEEeCChhHHHH-----hCCCCcceEeecCCCHhHHHHHHHHHHhccCCCC-hhHHHHHHHHHHHhCC-C
Q 046888 313 G--FCPGSRIVVTTRDKQVLRK-----QGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRP-EHLTVLSKKAVRYAEG-N 383 (1170)
Q Consensus 313 ~--~~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~G-l 383 (1170)
. ...+..||.||.....+.. ...+ ..+.++..+.++..+++..++....... .. ...+++.+.| .
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~ 223 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFD--RIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCV 223 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEE--EEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCC
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCC--eEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCC
Confidence 1 2245677888875533221 1222 5799999999999999988874432221 12 2456666666 4
Q ss_pred hhHHHHH
Q 046888 384 PLALEVL 390 (1170)
Q Consensus 384 PLAl~~l 390 (1170)
|-.+..+
T Consensus 224 ~~~i~~l 230 (285)
T 3h4m_A 224 GAELKAI 230 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=1e-06 Score=94.85 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=100.8
Q ss_pred CCCCccccch---hHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 182 DSSKGLVGLS---SRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 182 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
...++|+|.+ ..++.+..+...+ ..+.+.|+|.+|+||||||+.+++..........|+. ..+ .....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~-~~~~~----- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGI-HASIS----- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGG-GGGSC-----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHH-HHHHH-----
Confidence 3446788743 4556666666432 4578899999999999999999998765544455554 221 11000
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH--H--HHHHHcccCCC-CCC-cEEEEEeCChh----
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE--Q--LKYLVGWLDGF-CPG-SRIVVTTRDKQ---- 328 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~--~--~~~l~~~~~~~-~~g-srIIiTTR~~~---- 328 (1170)
.... +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...
T Consensus 96 -----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 -----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0000 111 346789999996431 1 22332222111 122 25888776321
Q ss_pred -----HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 329 -----VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 329 -----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
+...+... ..+++++++.++..+++...+...... -..+....+++.++|.+-.+..+
T Consensus 154 ~~~~~l~~r~~~~--~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWG--LTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHS--EEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcC--ceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHH
Confidence 11111111 679999999999999998877432221 12345567888899988766544
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=3.8e-06 Score=96.18 Aligned_cols=197 Identities=10% Similarity=0.116 Sum_probs=112.5
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc--cCCceEEEEechhhhhcCcCHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN--EFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
|.....++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.+.. .+...+.-.+ .+...+...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchHHH
Confidence 44556799999999999999865432 23899999999999999999987642 2222222111 1222233322
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh-HHHHhCC
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFCPGSRIVVTTRDKQ-VLRKQGV 335 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~ 335 (1170)
.. .+.............. .....-..++-+|++|+++.. .....+...+.......++|++|.... +.....
T Consensus 107 ~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~- 181 (353)
T 1sxj_D 107 RE-KVKNFARLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA- 181 (353)
T ss_dssp TT-HHHHHHHSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HH-HHHHHhhhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh-
Confidence 22 2222211110000000 000111235579999998653 334445444433445667777775442 211110
Q ss_pred CCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 336 KDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 336 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
.....+++++++.++..+.+...+...... -..+..+.++++++|.|-.+..+
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 011578999999999999998876432221 12345678899999998765443
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=1.2e-05 Score=96.83 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=105.6
Q ss_pred CCCCCccccchhHHHHHHHHhhcC---------------CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEec
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTG---------------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENV 245 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 245 (1170)
|.....++|++..++++..++... .+..+.+.|+|++|+||||+|+++++... +. .+.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-- 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-- 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC--
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe--
Confidence 445578999999999999998641 01347899999999999999999998872 22 12221
Q ss_pred hhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHH--HhcCCCeEEEEeCCCCh-----HHHHHHHcccCCCCCCc
Q 046888 246 REEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALE--RLRRTKVFMVLDDVSEF-----EQLKYLVGWLDGFCPGS 318 (1170)
Q Consensus 246 ~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~--~L~~kk~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs 318 (1170)
.+..... ......+....... ....+.....+ ....++.+|++|+++.. ..+..+...+.. .+.
T Consensus 110 ---~s~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 110 ---ASDVRSK-TLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TST 180 (516)
T ss_dssp ---TTSCCCH-HHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSS
T ss_pred ---CCCcchH-HHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCC
Confidence 2222222 12222111111110 01111100000 12357889999999542 112333322221 233
Q ss_pred EEEEEeCChh--HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhCCCh-hHHHHH
Q 046888 319 RIVVTTRDKQ--VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNH-RPEHLTVLSKKAVRYAEGNP-LALEVL 390 (1170)
Q Consensus 319 rIIiTTR~~~--v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP-LAl~~l 390 (1170)
.||+++.+.. .+.... .....+++++++.++..+++...+..... ..+ +....|++.++|.+ -++..+
T Consensus 181 ~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 4555554432 111121 11267999999999999999887754332 222 23567888899955 444444
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.26 E-value=3.3e-05 Score=84.81 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=104.4
Q ss_pred CccccchhHHHHHHH-------Hhhc-CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHH
Q 046888 185 KGLVGLSSRIECIKS-------LLCT-GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLV 256 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 256 (1170)
..++|.+..++++.. .+.. .....+.+.|+|.+|+|||++|+++++.....| +.+....+ . ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~-~-~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDK-M-IGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGG-C-TTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHH-h-cCCchH
Confidence 457787777666554 2221 234567899999999999999999999754322 22221110 0 000111
Q ss_pred HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh------------HHHHHHHcccCC---CCCCcEEE
Q 046888 257 HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF------------EQLKYLVGWLDG---FCPGSRIV 321 (1170)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gsrII 321 (1170)
..... +...+......+..+|+||+++.. ..++.+...+.. .+....||
T Consensus 108 ~~~~~----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 108 AKCQA----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HHHHH----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HHHHH----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 11011 111111223356789999998542 223334333322 23344577
Q ss_pred EEeCChhHHHHhCCC--CcceEeecCCCH-hHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC------hhHHHHHHH
Q 046888 322 VTTRDKQVLRKQGVK--DEHVYEVERLNE-DEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN------PLALEVLGS 392 (1170)
Q Consensus 322 iTTR~~~v~~~~~~~--~~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl------PLAl~~lg~ 392 (1170)
.||.....+...... -...+++++++. ++..+++.... ... .+....+++.+.|. .-++.++-.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 788877655542211 126789999988 55555554421 111 23456777788773 333333333
Q ss_pred HhcCCCHHHHHHHHHHHhhc
Q 046888 393 SLQQKSKQDWENVLDNLKQI 412 (1170)
Q Consensus 393 ~L~~~~~~~w~~~l~~l~~~ 412 (1170)
.-.......+..+++.+.+.
T Consensus 245 a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 245 SLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HTTSCGGGHHHHHHHHHHHT
T ss_pred HhhhchHHHHHHHHHHHHHc
Confidence 32223445566666555443
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.23 E-value=3.9e-05 Score=83.58 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 184 SKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
.++++|.+..++++.+++.. +....+.|.|+|++|+|||++|++++++....| +.+ +... ....+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~-~~~~~ 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAE-FVEVI 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTT-TSSSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHH-HHhhc
Confidence 35789999888888766531 112345688999999999999999999775332 222 2221 11111
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-----------------HHHHHHHcccCCC--
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-----------------EQLKYLVGWLDGF-- 314 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-----------------~~~~~l~~~~~~~-- 314 (1170)
.-. .... +...+.......+.+|+||+++.. ..+..++..+...
T Consensus 80 ~~~--~~~~---------------~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 80 GGL--GAAR---------------VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp TTH--HHHH---------------HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred cCh--hHHH---------------HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 100 0000 111111223346789999999764 1133444333222
Q ss_pred CCCcEEEEEeCChhHHHH-h----CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-HHH
Q 046888 315 CPGSRIVVTTRDKQVLRK-Q----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-ALE 388 (1170)
Q Consensus 315 ~~gsrIIiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-Al~ 388 (1170)
..+..||.||.....+.. . ..+ ..+.++..+.++..+++..++...... .........+++.+.|.+- .+.
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLD--RHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCC--EEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCC--eEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHH
Confidence 234566777765432211 1 233 678899999999999998887443222 1222234667777777643 444
Q ss_pred HH
Q 046888 389 VL 390 (1170)
Q Consensus 389 ~l 390 (1170)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=3.6e-05 Score=89.46 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=51.2
Q ss_pred ccEEEccCcCCcccCccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCC
Q 046888 734 LKKINLGRTTVTELPSSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLE 812 (1170)
Q Consensus 734 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~ 812 (1170)
|+.+.+..+...--...+..+..|+.+.+.... ++...+.++.+|+.+.+..+ ++.++ ..+.++.+|+
T Consensus 255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----------i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----------VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp CCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----------ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ceeEEcCCCcceeeccccccccccceeccCcee----------eccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 444444433222223345556666666554332 33333666667777776543 44443 3456667777
Q ss_pred EEECcCCCCcccc-ccccCCCCCCEEEecC
Q 046888 813 WLELRENNFESLP-VSIKQLSRLKRLDLSN 841 (1170)
Q Consensus 813 ~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~ 841 (1170)
.++|..+ ++.++ ..+.++++|+.++|..
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 7777533 55553 3456667777766643
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.4e-07 Score=107.85 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCCCCCEEeCCCCCCCC-CCcc---cCCCCCCCEEECcCCCCcc-----ccccccCCCCCCEEEecCCC
Q 046888 784 GLFSLNWLNLNNCALTA-IPEE---IGCLPSLEWLELRENNFES-----LPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 784 ~l~~L~~L~L~~~~l~~-ip~~---l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c~ 843 (1170)
.+++|+.|+|.+|.+.+ .+.. ...+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35666666666666553 1111 1245667777777666653 34444556677777777664
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=3.1e-07 Score=104.97 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCCCCCEEECcCCCCcc-ccccc---cCCCCCCEEEecCCCCCCC----CCCC---ccccceeccccc
Q 046888 807 CLPSLEWLELRENNFES-LPVSI---KQLSRLKRLDLSNCSMLQS----IPEL---PPSLKWLQAGNC 863 (1170)
Q Consensus 807 ~l~~L~~L~L~~n~l~~-lp~~l---~~l~~L~~L~L~~c~~l~~----lp~l---~~~L~~L~i~~c 863 (1170)
.+++|+.|+|++|.+.. .+..+ ..+++|+.|+|+.|..... ++.. .++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 46677777777776652 11112 2456777777766653221 2221 245666666555
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=2.3e-05 Score=92.09 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=104.5
Q ss_pred CCCccc-cchhHH--HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCc--eEEEEechhhhhcCcCHHH
Q 046888 183 SSKGLV-GLSSRI--ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEG--KCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 183 ~~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~ 257 (1170)
..++|| |..... ..+..+...... ...+.|+|.+|+||||||+++++.+...++. .+++. . ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----~------~~ 170 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----S------EK 170 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----H------HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----H------HH
Confidence 345666 654443 233333332222 5679999999999999999999988666533 23332 1 11
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----HHHHHHHcccCC-CCCCcEEEEEeCCh-----
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----EQLKYLVGWLDG-FCPGSRIVVTTRDK----- 327 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~~----- 327 (1170)
+..++...+... ....+.+.++.+.-+|+|||++.. ...+.+...+.. ...|..||+||...
T Consensus 171 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 171 FLNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 233333333221 111223444446779999999532 223333333221 23567899988763
Q ss_pred ----hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhCCChhHHH
Q 046888 328 ----QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNH-RPEHLTVLSKKAVRYAEGNPLALE 388 (1170)
Q Consensus 328 ----~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLAl~ 388 (1170)
.+...+... .++.+++++.++..+++...+-.... .++ +....|++.++|.+-.+.
T Consensus 243 ~l~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 243 EFQDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp SCCHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 222223222 57899999999999999888743221 122 234567788888876544
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.18 E-value=4.4e-05 Score=84.98 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=108.3
Q ss_pred HHHhhhhhcccccCCCCCCCccccchhHHHHHHHHhhcC----------CCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 166 IVKDILKKLECTSMSSDSSKGLVGLSSRIECIKSLLCTG----------LPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 166 iv~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
+++.+...+... .++..-..++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+++++.....
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEIVEG-GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTTBCC-SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhccC-CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 344444444111 34445578999999999998876421 1234678999999999999999999876432
Q ss_pred CCceEEEEechhhhhcCc-CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------
Q 046888 236 FEGKCFIENVREEIENGV-GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF------------- 301 (1170)
Q Consensus 236 F~~~~~~~~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~------------- 301 (1170)
| +.+ +..+...... ......+.++ ......++.+|++|+++..
T Consensus 82 ~---~~i-~~~~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 82 F---LNI-SAASLTSKYVGDGEKLVRALF-------------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp E---EEE-ESTTTSSSSCSCHHHHHHHHH-------------------HHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred e---EEe-eHHHHhhcccchHHHHHHHHH-------------------HHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 2 122 2211011111 1111111111 1222356789999999542
Q ss_pred HHHHHHHcccC---CC--CCCcEEEEEeCChh-----HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHH
Q 046888 302 EQLKYLVGWLD---GF--CPGSRIVVTTRDKQ-----VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTV 371 (1170)
Q Consensus 302 ~~~~~l~~~~~---~~--~~gsrIIiTTR~~~-----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~ 371 (1170)
.....++..+. .. +.+..||.||.... +... .+ ..+.++..+.++..+++...+-.....- ..+
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~--~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~ 212 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FT--KRVYVSLPDEQTRELLLNRLLQKQGSPL--DTE 212 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CC--EEEECCCCCHHHHHHHHHHHHGGGSCCS--CHH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CC--eEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHH
Confidence 11222322221 11 23445666776542 2232 33 5788888888888888887764332211 123
Q ss_pred HHHHHHHHhCCChh-HHHHHH
Q 046888 372 LSKKAVRYAEGNPL-ALEVLG 391 (1170)
Q Consensus 372 ~~~~i~~~~~GlPL-Al~~lg 391 (1170)
....+++.+.|.+- ++..+.
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHH
Confidence 45678888888765 554443
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.16 E-value=0.0001 Score=83.03 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=104.0
Q ss_pred CCCCCccccchhHHHHHHHHhh----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhh
Q 046888 181 SDSSKGLVGLSSRIECIKSLLC----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIE 250 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 250 (1170)
...-..++|.+..+++|.+.+. ......+-|.|+|.+|+|||+||+++++.....| +..+..+..+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhh
Confidence 3445679999999999988772 1122246789999999999999999999864332 2222211011
Q ss_pred cCcC-HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccC---C
Q 046888 251 NGVG-LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLD---G 313 (1170)
Q Consensus 251 ~~~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~---~ 313 (1170)
...+ .....+.+ +...-..++.+|+||+++.. .....++..+. .
T Consensus 90 ~~~g~~~~~~~~~-------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 90 KWMGESEKLVKQL-------------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TTGGGHHHHHHHH-------------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred cccchHHHHHHHH-------------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 1111 11111111 11222346789999999642 11233333222 2
Q ss_pred CCCCcEEEEEeCChhH-----HHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC-hhHH
Q 046888 314 FCPGSRIVVTTRDKQV-----LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN-PLAL 387 (1170)
Q Consensus 314 ~~~gsrIIiTTR~~~v-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLAl 387 (1170)
...+..||.||..... .. ..+ ..+.++..+.++..+++..++.+..... .......+++.+.|. +-.|
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~--Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRR--RFE--RRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHH--HCC--EEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHc--ccC--eEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHH
Confidence 3345566667765422 22 233 6788999999999999998874332211 122345677777763 4444
Q ss_pred HHHH
Q 046888 388 EVLG 391 (1170)
Q Consensus 388 ~~lg 391 (1170)
..+.
T Consensus 225 ~~l~ 228 (322)
T 3eie_A 225 AVVV 228 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.16 E-value=6.4e-05 Score=85.75 Aligned_cols=183 Identities=12% Similarity=0.091 Sum_probs=101.8
Q ss_pred CCCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhh
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIE 250 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 250 (1170)
+..-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+..+ ..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~-l~ 121 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD-LV 121 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHH-HH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHH-Hh
Confidence 34456799999999999887631 112235688999999999999999999874332 2212111 11
Q ss_pred cCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH-------------HHHHHHcccC---CC
Q 046888 251 NGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE-------------QLKYLVGWLD---GF 314 (1170)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~-------------~~~~l~~~~~---~~ 314 (1170)
..+ .......+...+...-..++.+|+||+++... ....++..+. ..
T Consensus 122 ~~~-----------------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 122 SKW-----------------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp SCC--------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred hhh-----------------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 000 00000001111112223567899999997431 1233333222 12
Q ss_pred CCCcEEEEEeCCh-----hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCC-ChhHHH
Q 046888 315 CPGSRIVVTTRDK-----QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEG-NPLALE 388 (1170)
Q Consensus 315 ~~gsrIIiTTR~~-----~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G-lPLAl~ 388 (1170)
..+..||.||... .+.. ..+ ..+.++..+.++..+++..++....... .......+++.+.| .+-.|.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~--~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~ 258 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFE--RRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIA 258 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCC--EEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccC--EEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHH
Confidence 3445566666544 2222 344 6788999999999999988874322111 12234567777777 444444
Q ss_pred HHH
Q 046888 389 VLG 391 (1170)
Q Consensus 389 ~lg 391 (1170)
.+.
T Consensus 259 ~l~ 261 (355)
T 2qp9_X 259 VVV 261 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.13 E-value=4.9e-05 Score=87.39 Aligned_cols=201 Identities=14% Similarity=0.116 Sum_probs=107.2
Q ss_pred CCccccchhHHHHHH---HHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 184 SKGLVGLSSRIECIK---SLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+++++.+....+. +.+. ..+..+...+......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIA-GSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEE-GGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-cccc-chhhhhcccchhHHHH
Confidence 568999999877754 4444333334689999999999999999999988643322 1121 1111222233333333
Q ss_pred HHHHHHhcCc--------------------cc------CC-----CCChhHHHHHHh-----cCC----CeEEEEeCCCC
Q 046888 261 QVVSLLLGER--------------------LE------TG-----GPNIPAYALERL-----RRT----KVFMVLDDVSE 300 (1170)
Q Consensus 261 ~ll~~l~~~~--------------------~~------~~-----~~~l~~~l~~~L-----~~k----k~LlVLDdv~~ 300 (1170)
+.+....+.. .. .+ ...+...+.+.. .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 3333211100 00 00 111121111111 123 35999999976
Q ss_pred h--HHHHHHHcccCCCCCCcEEEEEeCC------------h-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC
Q 046888 301 F--EQLKYLVGWLDGFCPGSRIVVTTRD------------K-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR 365 (1170)
Q Consensus 301 ~--~~~~~l~~~~~~~~~gsrIIiTTR~------------~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1170)
. +....|...+...... .++++|.. . .+.... ......+.+++++.++..+++...+-.....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l-~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDL-LDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHH-HTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHH-HhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3 4455555554433333 34444431 1 111111 0112468999999999999999887443221
Q ss_pred ChhHHHHHHHHHHHhC-CChhHHHHH
Q 046888 366 PEHLTVLSKKAVRYAE-GNPLALEVL 390 (1170)
Q Consensus 366 ~~~~~~~~~~i~~~~~-GlPLAl~~l 390 (1170)
-..+....+++++. |.|-.+..+
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22345677888887 887655443
No 192
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.8e-05 Score=90.55 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=107.0
Q ss_pred CCCCCccccchhHHHHHHHHh-hcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEec--------------
Q 046888 181 SDSSKGLVGLSSRIECIKSLL-CTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENV-------------- 245 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~-------------- 245 (1170)
|.....++|.+..++.+..++ ..+.. .. +.|+|+.|+||||+|+.++..+...-.+.+++...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 444567999999999999888 44322 23 89999999999999999998653222211111100
Q ss_pred ------hh-hhhcC-cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCCC
Q 046888 246 ------RE-EIENG-VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGFC 315 (1170)
Q Consensus 246 ------~~-~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~~ 315 (1170)
-+ ..+.. .......++++..+...........+ ..+..++-++|||+++.. +..+.+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l-----s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSK-----DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccc-----cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 00 00000 00000122222222111000000000 002346679999999763 33344444443334
Q ss_pred CCcEEEEEeCCh-hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhH-HHHHHHHHHHhCCChhHHHHH
Q 046888 316 PGSRIVVTTRDK-QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHL-TVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 316 ~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLAl~~l 390 (1170)
++.++|++|.+. .+...... ....+++++++.++..+.+...+-..+.. -. .+....+++.++|.+-.+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~s-R~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKS-QCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHh-hceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 567788777654 22222211 12689999999999999998877432221 11 234567888999998655433
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.12 E-value=7.4e-05 Score=87.95 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=105.4
Q ss_pred CCCCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhh
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEI 249 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 249 (1170)
++..-..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... .-|+. +
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~-----v 199 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS-----I 199 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE-----E
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE-----E
Confidence 344457899999999999877631 1123467999999999999999999987621 12222 1
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCC--
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGF-- 314 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~-- 314 (1170)
... .+ . ....+ .....+...+...-..++.+|+||+++.. .....++..+...
T Consensus 200 ~~~-~l---~----~~~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 200 SSS-DL---V----SKWLG----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp CCC---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred eHH-HH---H----hhhcc----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 100 00 0 00000 11222332222233457789999999754 2244555555432
Q ss_pred -CCCcEEEEEeCChhHHH-H--hCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC-hhHHHH
Q 046888 315 -CPGSRIVVTTRDKQVLR-K--QGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN-PLALEV 389 (1170)
Q Consensus 315 -~~gsrIIiTTR~~~v~~-~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~ 389 (1170)
..+..||.||.....+. . -..+ ..+.++..+.++..++|..++....... .......+++.+.|. +-.|..
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFE--KRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcc--eEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 34556676776542211 1 1233 6788999999999999988873322111 123345677777774 444444
Q ss_pred H
Q 046888 390 L 390 (1170)
Q Consensus 390 l 390 (1170)
+
T Consensus 344 l 344 (444)
T 2zan_A 344 I 344 (444)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=7e-05 Score=84.48 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=98.0
Q ss_pred CCCccc-cchhH--HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHH
Q 046888 183 SSKGLV-GLSSR--IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 183 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
..++|| |.... ...+..++.........+.|+|++|+||||||+.+++.....-...+++. .. .+.
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~----------~~~ 77 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD----------DFA 77 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH----------HHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH----------HHH
Confidence 445676 54333 33455554433224567899999999999999999998754422234443 11 122
Q ss_pred HHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----HHHHHHcccCC-CCCCcEEEEEeCCh-------
Q 046888 260 KQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----QLKYLVGWLDG-FCPGSRIVVTTRDK------- 327 (1170)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIIiTTR~~------- 327 (1170)
..+...+... . ...+.+.+. +.-+|++||++... ..+.+...+.. ...|.+||+||...
T Consensus 78 ~~~~~~~~~~-------~-~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 78 QAMVEHLKKG-------T-INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHHT-------C-HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHHcC-------c-HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 2232222211 1 111223333 36789999995432 22333322211 23456788887532
Q ss_pred --hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhH
Q 046888 328 --QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLA 386 (1170)
Q Consensus 328 --~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLA 386 (1170)
.+...+... .++++++ +.++..+++...+...... -..+....+++++ |..-.
T Consensus 149 ~~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 149 SDRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred hhHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 122222222 5789999 9999999998887432221 1134456677777 77543
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=5e-05 Score=85.40 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=101.4
Q ss_pred CCCCccccchhHHHHHHHHhhc---------C-CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCT---------G-LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
..-+.++|.+..++.|.+.+.. + ....+.|.|+|++|+|||+||+++++.... ..++..+..+..+.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh
Confidence 3446789999988888876531 1 123467999999999999999999987621 11222111110111
Q ss_pred CcC-HHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCC---C
Q 046888 252 GVG-LVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDG---F 314 (1170)
Q Consensus 252 ~~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~---~ 314 (1170)
..+ .....+.++ ...-..++.+|+||+++.. .....++..+.. .
T Consensus 86 ~~g~~~~~~~~lf-------------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 86 WLGESEKLVKNLF-------------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SCCSCHHHHHHHH-------------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred hhhHHHHHHHHHH-------------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 000 111111111 1222356789999999754 112333333322 2
Q ss_pred CCCcEEEEEeCChh-----HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCC-hhHHH
Q 046888 315 CPGSRIVVTTRDKQ-----VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGN-PLALE 388 (1170)
Q Consensus 315 ~~gsrIIiTTR~~~-----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~ 388 (1170)
..+..||.||.... +.+ ..+ ..+.++..+.++..+++..+.-+..... .......+++.+.|. +-.|.
T Consensus 147 ~~~v~vI~atn~~~~ld~al~r--Rf~--~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRR--RFE--KRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHH--TCC--EEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHh--hcC--eEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHH
Confidence 23445555665432 222 344 6789999999999999988773322111 123346677777776 43454
Q ss_pred HHH
Q 046888 389 VLG 391 (1170)
Q Consensus 389 ~lg 391 (1170)
.+.
T Consensus 221 ~l~ 223 (322)
T 1xwi_A 221 IIV 223 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.04 E-value=6.3e-05 Score=84.16 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=90.1
Q ss_pred ccccchhHHHHHHHHhhcC-------------CCCeEEEEEEecCCChHHHHHHHHHHHHhccCC---ceEEEEechhhh
Q 046888 186 GLVGLSSRIECIKSLLCTG-------------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE---GKCFIENVREEI 249 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~ 249 (1170)
.++|.+..++.|.+++... ......+.|+|.+|+|||++|+.+++.+..... ..+...+..+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4789988888887665411 233457899999999999999999987654321 112221211101
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCC-----------ChHHHHHHHcccCCCCCCc
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVS-----------EFEQLKYLVGWLDGFCPGS 318 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs 318 (1170)
....+.. ... +...+ +.. +.-+|+||+++ ..+....|...+.....+.
T Consensus 112 ~~~~g~~--~~~----------------~~~~~-~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 112 GQYIGHT--APK----------------TKEVL-KRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp CSSTTCH--HHH----------------HHHHH-HHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hhccccc--HHH----------------HHHHH-Hhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 1111100 000 01011 111 34589999997 4445566665555445567
Q ss_pred EEEEEeCChh----------HHHHhCCCCcceEeecCCCHhHHHHHHHHHHhc
Q 046888 319 RIVVTTRDKQ----------VLRKQGVKDEHVYEVERLNEDEGLELFYKYAFR 361 (1170)
Q Consensus 319 rIIiTTR~~~----------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1170)
+||.||.... +... .+ ..+.+++++.++..+++..++-.
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~--~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IA--HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EE--EEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CC--eEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888886432 2222 12 68999999999999999888743
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.03 E-value=5.1e-05 Score=89.00 Aligned_cols=179 Identities=13% Similarity=0.201 Sum_probs=104.7
Q ss_pred CCCCCccccchhHH---HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 181 SDSSKGLVGLSSRI---ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
|...+.+||.+..+ +.|...+..+ ....+.|+|.+|+||||||+.+++.....|.. +. ....+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~------a~~~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS------AVTSGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE------TTTCCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE------eccCCHHH
Confidence 44557799999888 6777777654 34679999999999999999999877544321 11 11123332
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH--HHHHHHcccCCCCCCcEEEE-EeCChh--HHHH
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE--QLKYLVGWLDGFCPGSRIVV-TTRDKQ--VLRK 332 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIi-TTR~~~--v~~~ 332 (1170)
+. .++.... ......++.+|+||+++... +.+.|+..+.. ....+|. ||.+.. +...
T Consensus 91 ir-~~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IR-EAIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HH-HHHHHHH---------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HH-HHHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 22 2221110 01224578899999997642 33334433332 1233443 555442 1111
Q ss_pred hCCCCcceEeecCCCHhHHHHHHHHHHhccC-----CCChhHHHHHHHHHHHhCCChhHHHH
Q 046888 333 QGVKDEHVYEVERLNEDEGLELFYKYAFRQN-----HRPEHLTVLSKKAVRYAEGNPLALEV 389 (1170)
Q Consensus 333 ~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~~~~~i~~~~~GlPLAl~~ 389 (1170)
.. ....++.+++++.++..+++.+.+-... ....-..+....++++++|.+-.+.-
T Consensus 153 L~-sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 153 LL-SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HH-TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred Hh-CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 11 1226889999999999999988764311 11112344567788889998865543
No 198
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.00 E-value=3.9e-05 Score=86.52 Aligned_cols=176 Identities=13% Similarity=0.160 Sum_probs=103.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHK 260 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1170)
|...++++|.+..++.+..++..+. -..++.+.|++|+|||++|+++++.+... .+.+. .+ ..+...+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-----~~-~~~~~~i~- 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-----GS-DCKIDFVR- 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-----TT-TCCHHHHH-
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-----cc-ccCHHHHH-
Confidence 4455789999999999999987442 23577888899999999999999877422 22232 11 12222222
Q ss_pred HHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH---HHHHHHcccCCCCCCcEEEEEeCChh-----HHHH
Q 046888 261 QVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE---QLKYLVGWLDGFCPGSRIVVTTRDKQ-----VLRK 332 (1170)
Q Consensus 261 ~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIIiTTR~~~-----v~~~ 332 (1170)
..+...... ....+++-++++|+++... ..+.|...+.....+.++|+||.... +...
T Consensus 91 ~~~~~~~~~--------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 91 GPLTNFASA--------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp THHHHHHHB--------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHHhh--------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 222221110 0012367899999998753 44555544433345678888887643 2222
Q ss_pred hCCCCcceEeecCCCHhHHHHHHHH-------HHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 333 QGVKDEHVYEVERLNEDEGLELFYK-------YAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 333 ~~~~~~~~~~l~~L~~~ea~~Lf~~-------~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
+ ..+++++++.++..+++.. .+......- ...+....+++.++|.+-.+
T Consensus 157 ~-----~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 C-----RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp S-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHH
T ss_pred C-----cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHH
Confidence 1 5799999998885443322 221111111 11245667888888877543
No 199
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.99 E-value=0.00048 Score=79.92 Aligned_cols=261 Identities=13% Similarity=0.163 Sum_probs=137.5
Q ss_pred cccCchhhcCCC-CCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCC---CCCCCCC-C-CCCcCc
Q 046888 543 INLNSRAFTNMP-NLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYP---LRTLPSN-F-KPKNLI 616 (1170)
Q Consensus 543 l~l~~~~f~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~~~~L~ 616 (1170)
-.+...+|.+++ .|+.+.+-.. -..+...-..-..+|+.+.+..+. ++.++.. | .+.+|+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s--------------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~ 117 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT--------------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELT 117 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT--------------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCC
T ss_pred eEcCHhhccCCCCcCEEEEECCC--------------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccce
Confidence 346677888874 5888877321 112223333334578888887653 5556443 4 677888
Q ss_pred cccCCCCCccccc-ccccccccceeecCCCCCCCccCCC--CCCCCccccccccCCcccccCCCcccccccccccccccc
Q 046888 617 ELNLPFSKVVQIW-EGKKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLE 693 (1170)
Q Consensus 617 ~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~ 693 (1170)
.+.+..+ ++.+. ..+..+.+|+.+.+..+. ..+++ +..+.+|+.+.+..- + ..+....-...+|+
T Consensus 118 ~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~--~-------~~I~~~aF~~~~l~ 185 (394)
T 4gt6_A 118 DIPILDS-VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS--V-------TAIEERAFTGTALT 185 (394)
T ss_dssp BCGGGTT-CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--C-------CEECTTTTTTCCCS
T ss_pred eeccCCc-cceehhhhhhhhccccccccccee--eeecccceecccccccccccce--e-------eEecccccccccee
Confidence 8877654 55554 345778888888887543 33333 667777777766531 1 33333222224455
Q ss_pred eeecccccccccccccccCCCcccEEecCCCCC--ch---------------hhhc--cccEEEccCcCCccc-CccccC
Q 046888 694 YLYINRCKRLKRVSTSICKLKSLIWLCLNECLN--LE---------------SFLE--SLKKINLGRTTVTEL-PSSFEN 753 (1170)
Q Consensus 694 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~--l~---------------~~~~--~L~~L~L~~~~i~~l-p~~l~~ 753 (1170)
.+.+...- .......+.++.+|.......... .. .++. .+..+.+. +.++.+ ...|.+
T Consensus 186 ~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~ 263 (394)
T 4gt6_A 186 QIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDS 263 (394)
T ss_dssp EEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTT
T ss_pred EEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeee
Confidence 55554321 111112233444444443321100 00 0000 01112111 112222 224667
Q ss_pred CCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc-ccccCC
Q 046888 754 IEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLP-VSIKQL 831 (1170)
Q Consensus 754 l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l 831 (1170)
+.+|+.+.+..+.. .+...++.++.+|+.+.+. +.++.++ ..+.++.+|+.+.|..+ ++.+. ..+.++
T Consensus 264 c~~L~~i~lp~~~~--------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 264 CAYLASVKMPDSVV--------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp CSSCCEEECCTTCC--------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cccccEEecccccc--------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 77777777754331 4455557777777777774 3455554 34566777777777653 55553 356677
Q ss_pred CCCCEEEecC
Q 046888 832 SRLKRLDLSN 841 (1170)
Q Consensus 832 ~~L~~L~L~~ 841 (1170)
.+|+.+.|..
T Consensus 334 ~~L~~i~ip~ 343 (394)
T 4gt6_A 334 EQLERIAIPS 343 (394)
T ss_dssp TTCCEEEECT
T ss_pred CCCCEEEECc
Confidence 7777777743
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.00052 Score=79.12 Aligned_cols=268 Identities=16% Similarity=0.141 Sum_probs=125.3
Q ss_pred ccCchhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-CCCCcCccccCCC
Q 046888 544 NLNSRAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-FKPKNLIELNLPF 622 (1170)
Q Consensus 544 ~l~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~ 622 (1170)
.+...+|.++.+|+.+.+... -..+......-. +|..+.+.. .++.++.. |...+|+.+.++.
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~--------------v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST--------------VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT--------------CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred ChHHHHhhCCCCCCEEEeCCc--------------ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 356678999999999988421 111222222222 455555543 24444433 3444677777765
Q ss_pred CCcccccccccccccceeecCCCCCCCccCCCCCCCCccccccccCCcccccCC-----Ccccccccccccccccceeec
Q 046888 623 SKVVQIWEGKKKAFKLKSINLSHSQYLIRIPDPSEAPNLERINLWNCTHLNLCD-----TAIEEVPSSVECLTNLEYLYI 697 (1170)
Q Consensus 623 ~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~L~l~~-----n~i~~lp~~i~~l~~L~~L~L 697 (1170)
+ +..+........+|+.+.+..+-.......+..+.+|+.+.+.......... +........+....++..+.+
T Consensus 123 ~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 123 A-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp T-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred c-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 4 3333332222234444444433211111224455555555444321110000 000111111222223333333
Q ss_pred ccccccccccccccCCCcccEEecCCCC-Cch----hhhccccEEEccCcCCcccC-ccccCCCCCCEEEccCCCCCCcC
Q 046888 698 NRCKRLKRVSTSICKLKSLIWLCLNECL-NLE----SFLESLKKINLGRTTVTELP-SSFENIEGLGTLGLERSQLPHLL 771 (1170)
Q Consensus 698 ~~~~~l~~lp~~i~~L~~L~~L~l~~c~-~l~----~~~~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~ 771 (1170)
.... .......+....+|+.+.+...- .+. .-...|+.+.+..+ ++.+. ..+.++.+|+.+.+..+
T Consensus 202 ~~~~-~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~------ 273 (379)
T 4h09_A 202 PSTV-KTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK------ 273 (379)
T ss_dssp CTTC-CEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC------
T ss_pred ccce-eEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc------
Confidence 2211 01111223344455555543210 000 00122444554433 34343 34566777777777543
Q ss_pred cCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc-ccccCCCCCCEEEe
Q 046888 772 SGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLP-VSIKQLSRLKRLDL 839 (1170)
Q Consensus 772 ~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L 839 (1170)
+..++..++.++.+|+.+.+.++.++.++ ..+.++.+|+.+.|..+ ++.++ ..+.++++|+.+.|
T Consensus 274 --i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 274 --VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp --CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred --ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 12455556777888888888777777764 45677788888888643 66554 34566666666554
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.90 E-value=0.00016 Score=83.74 Aligned_cols=184 Identities=15% Similarity=0.088 Sum_probs=101.1
Q ss_pred CCCCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhh
Q 046888 180 SSDSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEI 249 (1170)
Q Consensus 180 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 249 (1170)
.+.....++|.+..++.|..++.. .....+-|.|+|.+|+|||+||++++++.... ++..+..+ .
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~-l 184 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAAS-L 184 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCC-C
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHH-h
Confidence 334457899999999999887731 01224679999999999999999998875432 22222111 1
Q ss_pred hcCc--CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccC--
Q 046888 250 ENGV--GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLD-- 312 (1170)
Q Consensus 250 ~~~~--~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~-- 312 (1170)
...+ ........+ +...-...+.+|+||+++.. .....++..+.
T Consensus 185 ~~~~~g~~~~~~~~~-------------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 245 (389)
T 3vfd_A 185 TSKYVGEGEKLVRAL-------------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV 245 (389)
T ss_dssp -------CHHHHHHH-------------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHH-------------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc
Confidence 0000 000111111 11222345679999999643 11222322221
Q ss_pred --CCCCCcEEEEEeCChhHHH-Hh--CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChh-H
Q 046888 313 --GFCPGSRIVVTTRDKQVLR-KQ--GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPL-A 386 (1170)
Q Consensus 313 --~~~~gsrIIiTTR~~~v~~-~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-A 386 (1170)
.......||.||.....+. .. ... ..+.++..+.++..+++...+-.....- ..+....+++.+.|..- +
T Consensus 246 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~ 321 (389)
T 3vfd_A 246 QSAGDDRVLVMGATNRPQELDEAVLRRFI--KRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSD 321 (389)
T ss_dssp C-----CEEEEEEESCGGGCCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHH
T ss_pred cccCCCCEEEEEecCCchhcCHHHHcCcc--eEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHH
Confidence 1123345666665432211 11 222 5788999999999999988774322211 12345678888887543 5
Q ss_pred HHHHH
Q 046888 387 LEVLG 391 (1170)
Q Consensus 387 l~~lg 391 (1170)
+..+.
T Consensus 322 l~~L~ 326 (389)
T 3vfd_A 322 LTALA 326 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.90 E-value=0.00012 Score=81.64 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=92.3
Q ss_pred CCCCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhh
Q 046888 182 DSSKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIE 250 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 250 (1170)
..-..++|.+..+++|.+.+.. +....+.|.|+|++|.|||+||+++++.....| +.+.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~------- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK------- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-------
Confidence 3446799999998888877642 223456799999999999999999998764221 1121
Q ss_pred cCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH----------------HHHHHHcccCCC
Q 046888 251 NGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE----------------QLKYLVGWLDGF 314 (1170)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~----------------~~~~l~~~~~~~ 314 (1170)
...+ .....+. ....+...+.......+.+|++|+++... ....++..+...
T Consensus 82 ----~~~l----~~~~~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ----GPEL----LTMWFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ----HHHH----HHHHHTT----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ----hHHH----HhhhcCc----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 1111 1122111 11122222333334567899999997421 123333333221
Q ss_pred --CCCcEEEEEeCChhHHHH--h---CCCCcceEeecCCCHhHHHHHHHHHHh
Q 046888 315 --CPGSRIVVTTRDKQVLRK--Q---GVKDEHVYEVERLNEDEGLELFYKYAF 360 (1170)
Q Consensus 315 --~~gsrIIiTTR~~~v~~~--~---~~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1170)
..+..||.||.....+.. . ..+ ..+.++..+.++..+++..+.-
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~--~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLD--QLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccc--eEEecCCcCHHHHHHHHHHHHc
Confidence 234567777765532211 1 233 6789999999999999877763
No 203
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.82 E-value=6.2e-05 Score=76.90 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 183 SSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
....++||+..++.+.+.+.. ...+.+.|+|.+|+|||++|+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345799999999999998854 33456789999999999999999998754
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.82 E-value=0.0011 Score=74.80 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=133.3
Q ss_pred CCCCccccchhHHHHHHHHhhcC---CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHH
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTG---LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHL 258 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 258 (1170)
.....++|.+..++.+...+..+ ......++|+|++|.||||||+.++..+...|. ... .. + ......+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~-~--~~~~~~l 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GP-V--LVKQGDM 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TT-T--CCSHHHH
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--ch-H--hcCHHHH
Confidence 34457889888888887766532 223467899999999999999999998743321 111 00 0 0011111
Q ss_pred HHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh--HHHHHHHcccCCC--------C----------CCc
Q 046888 259 HKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF--EQLKYLVGWLDGF--------C----------PGS 318 (1170)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~--~~~~~l~~~~~~~--------~----------~gs 318 (1170)
. .+ ...+. ++-++++|+++.. ...+.+....... + +.-
T Consensus 94 ~-~~--------------------~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 94 A-AI--------------------LTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp H-HH--------------------HHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred H-HH--------------------HHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 0 00 01122 3446677887542 2233332211111 0 011
Q ss_pred EEE-EEeCChhHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh---
Q 046888 319 RIV-VTTRDKQVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVLGSSL--- 394 (1170)
Q Consensus 319 rII-iTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L--- 394 (1170)
.++ .|++...+.......-...+.+++.+.++-.+++.+.+-.... ....+.+..|++.+.|.|-.+.-+...+
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 222 3444433322111111146899999999999999887633221 1224557888999999996544332211
Q ss_pred ---cC---CCHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCHHHHHHHhhcccccCC--CCHHHHHHHHhhCCCCHHHH
Q 046888 395 ---QQ---KSKQDWENVLDNLKQISGASRIYKLLRISYEELTFEEKSIFLDIACFFKG--EGKDRVLMLLHDRQYNVTQA 466 (1170)
Q Consensus 395 ---~~---~~~~~w~~~l~~l~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~l~~~~~~~~~~~ 466 (1170)
.+ .+.+..+.+++.+.. ...+++...+.++..++-.+++ ...+.+......+....+..
T Consensus 230 a~~~~~~~It~~~v~~al~~~~~-------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~ 296 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVLNI-------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEV 296 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHHTC-------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHhCC-------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHH
Confidence 11 133333444433321 1124566655555544433332 23444444443321111222
Q ss_pred HH-HHHhcCCcEEe-CCeEEehH
Q 046888 467 LS-VLIDKSLIIEH-NNRLHMHE 487 (1170)
Q Consensus 467 l~-~L~~~sLi~~~-~~~~~mHd 487 (1170)
.+ .|...++|+.. .+++-...
T Consensus 297 ~~~~l~~~g~i~~~~~gr~~~~~ 319 (334)
T 1in4_A 297 YEPYLLQAGFLARTPRGRIVTEK 319 (334)
T ss_dssp THHHHHHTTSEEEETTEEEECHH
T ss_pred HHHHHHHcCCeecccccHHhhHH
Confidence 22 78889999988 55654443
No 205
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.79 E-value=0.0002 Score=80.99 Aligned_cols=173 Identities=14% Similarity=0.096 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCC---------------------ceEEEEechhhh
Q 046888 191 SSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFE---------------------GKCFIENVREEI 249 (1170)
Q Consensus 191 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~~~~~~ 249 (1170)
+...+.+...+..+ .-...+.++|..|+|||++|+.+++.+..... ...++.. .+ .
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~-~~-~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP-EK-G 84 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC-CT-T
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec-cc-c
Confidence 34455666666433 22457899999999999999999997643321 1122210 00 0
Q ss_pred hcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 250 ENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
+...+...+ +++...+... -..+++-++|+|+++. .+..+.|+..+....++..+|++|.+.
T Consensus 85 ~~~~~i~~i-r~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 85 KNTLGVDAV-REVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CSSBCHHHH-HHHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCCHHHH-HHHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 011222221 1222111100 0124577889999975 344666766666555667777777655
Q ss_pred -hHHHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046888 328 -QVLRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEVL 390 (1170)
Q Consensus 328 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 390 (1170)
.+...... ....+++++++.++..+++.... ... .+.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~S-Rc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRS-RCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHT-TSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhh-cceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 33333322 22689999999999999988765 111 234467889999999765443
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.0003 Score=79.83 Aligned_cols=184 Identities=12% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEEechhhhhcCcCHHHHH
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIENVREEIENGVGLVHLH 259 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~ 259 (1170)
|.....++|.+..++.|...+..+ +...+.++|++|+||||+|+.++..+... +...+.-.+ .+...+...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~ir 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDVVR 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHHHH
Confidence 334456889998889998888654 23338999999999999999999976432 111111111 12222333222
Q ss_pred HHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCChh-HHHHhCCC
Q 046888 260 KQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDKQ-VLRKQGVK 336 (1170)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~ 336 (1170)
+ .+..+.... ..+.+.+-++|+|+++. .+..+.|...+.......++|++|.... +......
T Consensus 95 ~-~i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s- 159 (340)
T 1sxj_C 95 N-QIKDFASTR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS- 159 (340)
T ss_dssp T-HHHHHHHBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT-
T ss_pred H-HHHHHHhhc-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh-
Confidence 2 222211100 00123467889999864 3344445444433345667777765442 2221111
Q ss_pred CcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCChhHH
Q 046888 337 DEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNPLAL 387 (1170)
Q Consensus 337 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl 387 (1170)
....+.+.+++.++..+.+...+-..... -..+..+.+++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 12578999999999988887766322211 11345577888899988643
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00073 Score=76.79 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=101.2
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||++++++....| +..+..+..+...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 5689999999999876541 334457799999999999999999999876543 2222222122211
Q ss_pred CH-HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCC-
Q 046888 254 GL-VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFC- 315 (1170)
Q Consensus 254 ~~-~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~- 315 (1170)
+- ....++++. ..-...+.+|++|+++.. ..+..++..++.+.
T Consensus 224 Gese~~vr~lF~-------------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 224 GEGSRMVRELFV-------------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp THHHHHHHHHHH-------------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHH-------------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 21 122222222 222456899999999541 12344554444333
Q ss_pred -CCcEEEEEeCChhH-----HHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 316 -PGSRIVVTTRDKQV-----LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 316 -~gsrIIiTTR~~~v-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
.+-.||.||-.... .+.-..+ ..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~ 353 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRID--RKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGC 353 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSC--CEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCc--eEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCC
Confidence 23345666654422 2212345 789999999999999998887432221 2233 4456666664
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=7e-06 Score=84.45 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=55.2
Q ss_pred ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEEC--cCCCC
Q 046888 749 SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLEL--RENNF 821 (1170)
Q Consensus 749 ~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L--~~n~l 821 (1170)
..+...++|++|+|++|.+.... ...+... +...++|++|+|++|.|.+ +...+...++|+.|+| ++|.+
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g--~~~l~~~-L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPV--AFALAEM-LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHH--HHHHHHH-HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCChHH--HHHHHHH-HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 34555667777777777764310 0111111 3345667777777777764 4555666677777777 66766
Q ss_pred cc-----ccccccCCCCCCEEEecCCC
Q 046888 822 ES-----LPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 822 ~~-----lp~~l~~l~~L~~L~L~~c~ 843 (1170)
.. +...+...++|++|+|++|.
T Consensus 136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 136 GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 62 34455566777777777765
No 209
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.0036 Score=71.93 Aligned_cols=276 Identities=14% Similarity=0.164 Sum_probs=150.2
Q ss_pred hhhcCCCCCceEEEccCCCCCcccccccCCCceeecCCCcCCCCCeeEEEecCCCCCCCCCC-CCCCcCccccCCCCCcc
Q 046888 548 RAFTNMPNLRVLKFYIPEGLDMSFEEQHSDSKVQFLDGLDYLPEKLRYLHLHKYPLRTLPSN-FKPKNLIELNLPFSKVV 626 (1170)
Q Consensus 548 ~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~i~ 626 (1170)
..|....+|+.+.+.. .-..+.+.-..-..+|+.+.+..+ ++.++.. |.-.+|..+.+.. +++
T Consensus 40 ~~~~~~~~i~~v~ip~--------------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~-~l~ 103 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--------------GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGME-RVK 103 (379)
T ss_dssp TTGGGGGGCSEEEECT--------------TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECT-TCC
T ss_pred cccccccCCEEEEeCC--------------CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCc-eee
Confidence 3466777888887732 112333333344457888888643 6666544 4323566666653 355
Q ss_pred cccccccccccceeecCCCCCCCccCCC--CCCCCccccccccCCcccccCCCccccccc-ccccccccceeeccccccc
Q 046888 627 QIWEGKKKAFKLKSINLSHSQYLIRIPD--PSEAPNLERINLWNCTHLNLCDTAIEEVPS-SVECLTNLEYLYINRCKRL 703 (1170)
Q Consensus 627 ~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l 703 (1170)
.+........+|+.+.+..+. ..+.. +.+. +|+.+.+.. .+..+.. .+..+.+|+.+.+..+...
T Consensus 104 ~I~~~aF~~~~L~~i~lp~~~--~~i~~~~F~~~-~l~~~~~~~---------~v~~i~~~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 104 KFGDYVFQGTDLDDFEFPGAT--TEIGNYIFYNS-SVKRIVIPK---------SVTTIKDGIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp EECTTTTTTCCCSEEECCTTC--CEECTTTTTTC-CCCEEEECT---------TCCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred EeccceeccCCcccccCCCcc--ccccccccccc-eeeeeeccc---------eeeccccchhcccccccccccccccce
Confidence 665544444578888877652 22222 3222 333333221 1122221 2344555555555432211
Q ss_pred c------------cccccccCCCcccEEecCCCCCc-----hhhhccccEEEccCcCCcccC-ccccCCCCCCEEEccCC
Q 046888 704 K------------RVSTSICKLKSLIWLCLNECLNL-----ESFLESLKKINLGRTTVTELP-SSFENIEGLGTLGLERS 765 (1170)
Q Consensus 704 ~------------~lp~~i~~L~~L~~L~l~~c~~l-----~~~~~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~ 765 (1170)
. .....+....++..+.+...... ......|+.+.+..+ +..++ ..+.++..|+.+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 172 YVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp EEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT
T ss_pred eecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC
Confidence 1 11112223334444443321110 011223555555433 33332 35667888888888654
Q ss_pred CCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc-ccccCCCCCCEEEecCCC
Q 046888 766 QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLP-VSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 766 ~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~ 843 (1170)
+ ..+...++.++.+|+.+.+.. ++..++ ..+..+++|+.+.+.++.++.++ ..+.++.+|+.+.|..+
T Consensus 251 -v-------~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~- 320 (379)
T 4h09_A 251 -V-------TSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA- 320 (379)
T ss_dssp -C-------CEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred -c-------cEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-
Confidence 2 256666688888999999865 355554 35678899999999988888885 45788899999887532
Q ss_pred CCCCCCCCccccceeccccccccCCCC
Q 046888 844 MLQSIPELPPSLKWLQAGNCKRLQSLP 870 (1170)
Q Consensus 844 ~l~~lp~l~~~L~~L~i~~c~~L~~l~ 870 (1170)
++.|.. --..+|.+|+.+.
T Consensus 321 -l~~I~~-------~aF~~C~~L~~i~ 339 (379)
T 4h09_A 321 -LKTIQV-------YAFKNCKALSTIS 339 (379)
T ss_dssp -CCEECT-------TTTTTCTTCCCCC
T ss_pred -ccEEHH-------HHhhCCCCCCEEE
Confidence 333332 1235777777663
No 210
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.00067 Score=78.63 Aligned_cols=85 Identities=19% Similarity=0.382 Sum_probs=61.3
Q ss_pred ccccCCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc-c
Q 046888 749 SSFENIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTAIP-EEIGCLPSLEWLELRENNFESLP-V 826 (1170)
Q Consensus 749 ~~l~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp-~ 826 (1170)
..+.++++|+.+.+... +..++..+|.++.+|+.++|..+ ++.+. ..+.++.+|+.+.|..+ ++.++ .
T Consensus 282 ~aF~~c~~L~~i~l~~~--------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSSR--------ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp TTTTTCTTCCEEECCTT--------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cccccccccccccCCCc--------ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 35677888888887532 23567777888888888888653 66553 46777888888888654 66664 4
Q ss_pred cccCCCCCCEEEecCCC
Q 046888 827 SIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 827 ~l~~l~~L~~L~L~~c~ 843 (1170)
.+.++++|+.+++.++.
T Consensus 352 aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECCce
Confidence 67888889888887763
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.66 E-value=6.5e-05 Score=73.73 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 186 GLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999888775322233457899999999999999998754
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.63 E-value=0.00046 Score=81.72 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=99.9
Q ss_pred CCccccchhHHHHHHHHhhcC-----------CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 184 SKGLVGLSSRIECIKSLLCTG-----------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
...++|.+..+++|.+++... ....+-|.|+|.+|.|||++|++++++... .++..+..+..+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhh
Confidence 356999999999998877531 334567899999999999999999887532 22222222211111
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCC--CCCC
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDG--FCPG 317 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~g 317 (1170)
.+.. .. .+...+.....+++.+|+||+++.. .....|+..+.. ...+
T Consensus 279 ~g~~--~~----------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 AGES--ES----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp TTHH--HH----------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred cchh--HH----------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1110 00 0111222334566789999998311 112333333322 1234
Q ss_pred cEEEEEeCChhH-HHH----hCCCCcceEeecCCCHhHHHHHHHHHHhccCCCC-hhHHHHHHHHHHHhCCC-hhHHHHH
Q 046888 318 SRIVVTTRDKQV-LRK----QGVKDEHVYEVERLNEDEGLELFYKYAFRQNHRP-EHLTVLSKKAVRYAEGN-PLALEVL 390 (1170)
Q Consensus 318 srIIiTTR~~~v-~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl-PLAl~~l 390 (1170)
.+||.||..... ... ...+ ..+.++..+.++..+++..++-...... ..+ .++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~--~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFD--REVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCc--eEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 466667765422 111 1223 5789999999999999988863322111 122 3455566654 4444443
No 213
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.0011 Score=76.36 Aligned_cols=170 Identities=16% Similarity=0.242 Sum_probs=99.7
Q ss_pred CccccchhHHHHHHHHhh-----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLC-----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
..+.|.+..+++|.+.+. .+-...+-|.++|++|.|||.||++++++....| +.....+..+...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 568999999999987653 1334567899999999999999999999876443 2222222122222
Q ss_pred CHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCCC
Q 046888 254 GLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFCP 316 (1170)
Q Consensus 254 ~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~~ 316 (1170)
+.. ...+.++. ..-...+.+|++|+++.. ..+..++..++.+..
T Consensus 285 Gesek~ir~lF~-------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 285 GEGARMVRELFE-------------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SHHHHHHHHHHH-------------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHH-------------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 221 22222221 223456899999998531 112333434433322
Q ss_pred --CcEEEEEeCChhH-----HHHhCCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 317 --GSRIVVTTRDKQV-----LRKQGVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 317 --gsrIIiTTR~~~v-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
+-.||.||-.... .+.-..+ ..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD--~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRID--RKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCC--EEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhcccccc--EEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 3344556643322 2211345 789999999999999998887432221 1223 3456666664
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.61 E-value=0.00055 Score=74.59 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=34.7
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999998888766643222235678999999999999999998653
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.59 E-value=5.1e-05 Score=79.09 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCCccccchh----HHHHHHHHhhcCCCC--eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 183 SSKGLVGLSS----RIECIKSLLCTGLPD--VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 183 ~~~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..++|++.+. .++.+..++...... .+.+.|+|.+|+|||+||+++++....+....+|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456776543 334455555433221 268999999999999999999998876555556654
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0015 Score=75.59 Aligned_cols=171 Identities=20% Similarity=0.336 Sum_probs=101.3
Q ss_pred CCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 184 SKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
-+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..+..+..+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 35688999999998876541 234467899999999999999999999876443 222222212222
Q ss_pred cCHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCC
Q 046888 253 VGLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFC 315 (1170)
Q Consensus 253 ~~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~ 315 (1170)
.+-. ...+.++. ..-...+.+|++|+++.. ..+..++..++.+.
T Consensus 256 ~Gese~~ir~~F~-------------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIREMFA-------------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHHHHH-------------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHHH-------------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 2211 11222211 223457899999999531 11334444443332
Q ss_pred --CCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 316 --PGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 316 --~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
.+..||.||-....+... ..+ ..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLD--RKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEE--EEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccc--eeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 344677777654332221 123 678999999999999998887433221 2233 3456666664
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.55 E-value=0.00033 Score=71.34 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=33.0
Q ss_pred Ccccc----chhHHHHHHHHhhcC-CCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 185 KGLVG----LSSRIECIKSLLCTG-LPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 185 ~~~vG----r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|++ ....++.+.+++..- ....+.++|+|.+|.||||||+.+++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45554 333344444444321 12347899999999999999999999875
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00069 Score=78.24 Aligned_cols=172 Identities=16% Similarity=0.239 Sum_probs=100.5
Q ss_pred CCCccccchhHHHHHHHHhh-----------cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 183 SSKGLVGLSSRIECIKSLLC-----------TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
.-..+.|.+..+++|.+.+. .+-...+-|.++|++|.|||.||++++++....| +..+..+..+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 34678999999999887643 1234467899999999999999999999875433 22222221222
Q ss_pred CcCHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCC
Q 046888 252 GVGLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGF 314 (1170)
Q Consensus 252 ~~~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~ 314 (1170)
..+.. ...+.++. ..-...+.+|++|+++.. ..+..++..++.+
T Consensus 255 ~vGese~~ir~lF~-------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVRDAFA-------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHHHHHH-------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHH-------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 22221 22222221 122346889999998421 1133455555544
Q ss_pred CC--CcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 315 CP--GSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 315 ~~--gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
.. +--||.||.....+... ..+ ..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLD--RKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEE--EEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCcee--EEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 33 33455566544332211 233 678999999999999998776433221 1223 3455666654
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.54 E-value=0.00061 Score=73.84 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=84.3
Q ss_pred CCCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhh
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIE 250 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 250 (1170)
+...++++|.+..++++.+++.. +....+-+.|+|.+|.||||||+++++.....| +.+. ... ..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~-~~ 82 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-FV 82 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCS-ST
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHH-HH
Confidence 34456799999888887765431 011234588999999999999999998764332 2221 111 11
Q ss_pred cCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCC
Q 046888 251 NGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGF 314 (1170)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~ 314 (1170)
.... ......+...+.......+.++++|+++.. ..+..++..+...
T Consensus 83 ~~~~-----------------~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 83 EMFV-----------------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp TSCC-----------------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred HHhh-----------------hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 0000 000000111111222345678999998321 1233333332221
Q ss_pred --CCCcEEEEEeCChhHH-HHh----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 315 --CPGSRIVVTTRDKQVL-RKQ----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 315 --~~gsrIIiTTR~~~v~-~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
..+..||.||...... ... ..+ ..+.++..+.++..+++..+.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~--~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFD--RQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCC--eEEEeCCCCHHHHHHHHHHHH
Confidence 2344667777654321 111 123 578888888888888887765
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=4e-05 Score=76.93 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=39.8
Q ss_pred CCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCC-CCCC-CCcccCCC----CCCCEEECcCC-CCcc--ccc
Q 046888 756 GLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNC-ALTA-IPEEIGCL----PSLEWLELREN-NFES--LPV 826 (1170)
Q Consensus 756 ~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~-~l~~-ip~~l~~l----~~L~~L~L~~n-~l~~--lp~ 826 (1170)
+|+.|++++|.++.. .+.. +.++++|+.|+|++| .+++ --..+..+ ++|+.|+|++| +++. + .
T Consensus 62 ~L~~LDLs~~~Itd~-----GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-----GFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-I 133 (176)
T ss_dssp CEEEEEEESCCCCGG-----GGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-H
T ss_pred eEeEEeCcCCCccHH-----HHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-H
Confidence 455666666554321 1211 445556666666666 3443 11122222 24666666665 3441 2 1
Q ss_pred cccCCCCCCEEEecCCCCCC
Q 046888 827 SIKQLSRLKRLDLSNCSMLQ 846 (1170)
Q Consensus 827 ~l~~l~~L~~L~L~~c~~l~ 846 (1170)
.+..+++|++|+|++|+.++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 34455666666666665444
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.52 E-value=0.00067 Score=75.77 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=39.1
Q ss_pred ccccchhHHHHHHHHhhcCC-------CCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 186 GLVGLSSRIECIKSLLCTGL-------PDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.++|.+..++.+...+.... .....+.|+|.+|+|||++|+.+++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 57899999888887765321 113579999999999999999999977543
No 222
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.52 E-value=1.4e-05 Score=80.25 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=40.8
Q ss_pred CCCCCccccccccCCcccccCCCcccccccccccccccceeeccccccccc-ccccccCCCcccEEecCCCCCchh
Q 046888 655 PSEAPNLERINLWNCTHLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKR-VSTSICKLKSLIWLCLNECLNLES 729 (1170)
Q Consensus 655 ~~~l~~L~~L~L~~c~~L~l~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~ 729 (1170)
+.++++|++|+|++|..+ ++..+..+...-...++|++|+|++|..++. --..+.++++|+.|++++|+.+++
T Consensus 81 L~~~~~L~~L~L~~C~~I--tD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYI--EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTC--CHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCcc--CHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 344556666666666544 2222222211000124688888888874432 223456788888888888876654
No 223
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.52 E-value=0.00071 Score=80.10 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=83.7
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC------CceEEEEechhhhhcCcCH
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF------EGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 255 (1170)
...+.+|||+.+++.+...+.... ..-+.|+|.+|+|||++|+.+++.+...+ ...++..+ ..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~----~~----- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD----MG----- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee----CC-----
Confidence 344679999999999999986532 33568999999999999999999875432 11122111 00
Q ss_pred HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCC
Q 046888 256 VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGV 335 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 335 (1170)
..........++..+...-..++.+|++| ...+....|...+. ...-++|.+|...........
T Consensus 246 ------------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ------------TKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------------ccccchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 00000011223323323334567889999 22233333443332 123456655544331111111
Q ss_pred C-----CcceEeecCCCHhHHHHHHHHHH
Q 046888 336 K-----DEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 336 ~-----~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
+ ....+.++..+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 22579999999999999998765
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.46 E-value=0.00036 Score=89.22 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
...+.+|||+.++.++...|.... .+-+.|+|.+|+||||+|+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999886532 345789999999999999999998744
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0018 Score=74.72 Aligned_cols=170 Identities=21% Similarity=0.269 Sum_probs=93.5
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..+..+..+...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcccc
Confidence 5689999999998876541 334567899999999999999999999875433 2222222122222
Q ss_pred CHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCC--
Q 046888 254 GLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGF-- 314 (1170)
Q Consensus 254 ~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~-- 314 (1170)
+.. ...++++. ..-...+.++++|+++.. ..+..|+..++.+
T Consensus 248 Ge~e~~ir~lF~-------------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 248 GEGPRMVRDVFR-------------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp SHHHHHHHHHHH-------------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred chhHHHHHHHHH-------------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 211 22222222 222456889999998321 1133444443322
Q ss_pred CCCcEEEEEeCChhH-----HHHhCCCCcceEeecCCC-HhHHHHHHHHHHhccCC-CChhHHHHHHHHHHHhCCC
Q 046888 315 CPGSRIVVTTRDKQV-----LRKQGVKDEHVYEVERLN-EDEGLELFYKYAFRQNH-RPEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 315 ~~gsrIIiTTR~~~v-----~~~~~~~~~~~~~l~~L~-~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 383 (1170)
..+-.||.||-.... .+.-..+ ..++++.+. .++..++|..+.-+... +..++ ..+++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd--~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLD--RKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEE--EEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcce--EEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 234456667754422 2111233 567787664 45556677666533221 12233 3455566554
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.43 E-value=0.0014 Score=72.75 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999888775422333467899999999999999998854
No 227
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0019 Score=73.55 Aligned_cols=170 Identities=21% Similarity=0.249 Sum_probs=98.7
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
.++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||++++++....| +..+..+..+...
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccC
Confidence 5688999999998876541 223457899999999999999999999876443 2222222122222
Q ss_pred CHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCC-
Q 046888 254 GLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFC- 315 (1170)
Q Consensus 254 ~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~- 315 (1170)
+-. ...+.++. ..-...+.+|++|+++.. ..+..++..++.+.
T Consensus 258 Gesek~ir~lF~-------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 258 GDGPRLCRQIFK-------------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp SHHHHHHHHHHH-------------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHH-------------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 221 22222222 222356889999998531 12334444433332
Q ss_pred -CCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHhCCC
Q 046888 316 -PGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYAFRQNHR-PEHLTVLSKKAVRYAEGN 383 (1170)
Q Consensus 316 -~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 383 (1170)
.+-.||.||-..+.+... ..+ ..++++.-+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD--~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRID--RKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEE--EEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCcee--EEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 233556666544433221 223 578899999999999998887432221 1223 3455556554
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.39 E-value=0.0028 Score=74.38 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=98.3
Q ss_pred CCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 183 SSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
..+.++|.+..++++.+++.. +..-.+-|.|+|++|.|||+||++++.+....| +..+..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 345789999888887766431 111234588999999999999999999764332 222222211111
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCC--
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGF-- 314 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~-- 314 (1170)
.+... ..+...+.......+.+|+||+++.. ..+..++..++.+
T Consensus 90 ~g~~~------------------~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 VGVGA------------------ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTHHH------------------HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred hcccH------------------HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 11100 00111222334567889999999541 1234444333322
Q ss_pred CCCcEEEEEeCChhHHHH--h---CCCCcceEeecCCCHhHHHHHHHHHHhccCCCChhHHHHHHHHHHHhCCCh
Q 046888 315 CPGSRIVVTTRDKQVLRK--Q---GVKDEHVYEVERLNEDEGLELFYKYAFRQNHRPEHLTVLSKKAVRYAEGNP 384 (1170)
Q Consensus 315 ~~gsrIIiTTR~~~v~~~--~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1170)
..+..||.||.....+.. . ..+ ..+.++..+.++..+++..++-+.....+. + ...+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd--~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~-l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFD--KKIVVDPPDMLGRKKILEIHTRNKPLAEDV--N-LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHHTTSCBCTTC--C-HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcce--eEeecCCCCHHHHHHHHHHHHHhCCCcchh--h-HHHHHHhcCCCc
Confidence 234567777766543321 1 223 578899999988888988776332211111 0 234677777776
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.37 E-value=0.00039 Score=77.53 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHhhc------------CCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 186 GLVGLSSRIECIKSLLCT------------GLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999988888877643 011235688999999999999999998774
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.36 E-value=0.00014 Score=79.55 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
.....++|.+..++++.+.+.. +....+-+.|+|.+|+|||+||++++++....|-. + +... ...
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~-~~~ 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSS-FIE 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCT-TTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHH-HHH
Confidence 3456799999988888876641 11223347899999999999999999987543321 1 1111 000
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChH-----------------HHHHHHcccCCC
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFE-----------------QLKYLVGWLDGF 314 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~-----------------~~~~l~~~~~~~ 314 (1170)
. .. ......+...+......++.+|+||+++... .+..++..+...
T Consensus 83 ~-------------~~----~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 83 M-------------FV----GLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp S-------------CS----SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred h-------------hc----chHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0 00 0111122222223334567899999995431 122233333322
Q ss_pred C---CCcEEEEEeCChhHHH-H-h---CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 315 C---PGSRIVVTTRDKQVLR-K-Q---GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 315 ~---~gsrIIiTTR~~~v~~-~-~---~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
. ....||.||.....+. . . ..+ ..+.++..+.++..+++..++
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~--~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFD--RQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSC--CCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCC--eEEEecCcCHHHHHHHHHHHH
Confidence 1 1245667776553211 1 1 222 568888999999999887765
No 231
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.29 E-value=0.00017 Score=78.01 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=19.3
Q ss_pred CCCCCCEEEccCCCCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC
Q 046888 753 NIEGLGTLGLERSQLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA 800 (1170)
Q Consensus 753 ~l~~L~~L~L~~~~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~ 800 (1170)
++++|+.|+|++|.+.+. ..++.. +..+++|+.|+|++|.|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l----~~l~~~-~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRL----DDMSSI-VQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCC----GGGTTH-HHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCC----ccchhH-HhhCCCCCEEECCCCccCC
Confidence 455555555555555431 112221 2344444444444444444
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.28 E-value=0.0018 Score=81.74 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=84.9
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC------CceEEEEechhhhhcCcCH
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF------EGKCFIENVREEIENGVGL 255 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 255 (1170)
...+.+|||+..++++...|.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 344679999999999999986532 23478999999999999999999874321 122221110
Q ss_pred HHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHHHHhCC
Q 046888 256 VHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVLRKQGV 335 (1170)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 335 (1170)
+..........++..+......++.+|++| ...+....+...+. ...-++|.||...........
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000001112233333334444678899999 22233333443333 223466666654431111111
Q ss_pred C-----CcceEeecCCCHhHHHHHHHHHH
Q 046888 336 K-----DEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 336 ~-----~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
+ ....+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 12579999999999999998654
No 233
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.0013 Score=72.96 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=89.7
Q ss_pred cchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh---ccCCceEEEEechhhhhc-CcCHHHHHHHHHH
Q 046888 189 GLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS---NEFEGKCFIENVREEIEN-GVGLVHLHKQVVS 264 (1170)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~~~-~~~~~~l~~~ll~ 264 (1170)
|-+..++.|...+..+. .....++|++|.||||+|+.+++... ........+. .+. ..++..+. ++..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-----~~~~~~~id~ir-~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-----PEGENIGIDDIR-TIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-----CSSSCBCHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-----CCcCCCCHHHHH-HHHH
Confidence 34556677777776543 67899999999999999999987531 1123333432 111 23443332 2433
Q ss_pred HHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh-hHHHHhCCCCcceE
Q 046888 265 LLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK-QVLRKQGVKDEHVY 341 (1170)
Q Consensus 265 ~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~ 341 (1170)
.+... -..+++-++|+|+++. .+..+.|+..+....+.+.+|++|.+. .+....... .+
T Consensus 73 ~~~~~---------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~ 134 (305)
T 2gno_A 73 FLNYS---------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VF 134 (305)
T ss_dssp HHTSC---------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SE
T ss_pred HHhhc---------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eE
Confidence 33211 0123566889999975 345666666655555677777766544 444444332 89
Q ss_pred eecCCCHhHHHHHHHHHH
Q 046888 342 EVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 342 ~l~~L~~~ea~~Lf~~~a 359 (1170)
++++++.++..+.+...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999988776
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.0022 Score=81.01 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=88.0
Q ss_pred CCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc------CCceEEEEechhhhh---cCc
Q 046888 183 SSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE------FEGKCFIENVREEIE---NGV 253 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~---~~~ 253 (1170)
..+.++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++++... ....+|..+...... ...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 4457999999999999988643 33457899999999999999999977432 133333322221000 000
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh-cCCCeEEEEeCCCCh----------HHHHHHHcccCCCCCCcEEEE
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERL-RRTKVFMVLDDVSEF----------EQLKYLVGWLDGFCPGSRIVV 322 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L-~~kk~LlVLDdv~~~----------~~~~~l~~~~~~~~~gsrIIi 322 (1170)
......+.++ +.+ ..++.+|++|+++.. .+...++...-. ..+.++|.
T Consensus 262 ~~e~~l~~~~--------------------~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~ 320 (758)
T 1r6b_X 262 DFEKRFKALL--------------------KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIG 320 (758)
T ss_dssp CHHHHHHHHH--------------------HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEE
T ss_pred hHHHHHHHHH--------------------HHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEE
Confidence 1111111111 222 235789999999754 222223322221 23446666
Q ss_pred EeCChhHHHHhCC-----CCcceEeecCCCHhHHHHHHHHHH
Q 046888 323 TTRDKQVLRKQGV-----KDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 323 TTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
+|........... .....+.++..+.++..+++....
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6654332111111 122468999999999998887654
No 235
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.22 E-value=5.6e-05 Score=77.61 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=71.0
Q ss_pred ccccCCCCCCEEEccCC-CCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcCCCCc
Q 046888 749 SSFENIEGLGTLGLERS-QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 749 ~~l~~l~~L~~L~L~~~-~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~n~l~ 822 (1170)
..+...++|++|+|++| .+... +...+... +...++|++|+|++|.+.+ +...+...++|++|+|++|.|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~--g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVP--TLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHH--HHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHH--HHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34667889999999999 76532 11122222 6677899999999999985 4556667789999999999988
Q ss_pred c-----ccccccCCCCCCEEEe--cCCCC
Q 046888 823 S-----LPVSIKQLSRLKRLDL--SNCSM 844 (1170)
Q Consensus 823 ~-----lp~~l~~l~~L~~L~L--~~c~~ 844 (1170)
. +...+...++|++|+| ++|..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 3 5667888899999999 77764
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.19 E-value=0.00022 Score=77.08 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=45.2
Q ss_pred CCCCCCCEEeCCCCCCCCC---CcccCCCCCCCEEECcCCCCccccccccCCC--CCCEEEecCCCCCCCCC
Q 046888 783 SGLFSLNWLNLNNCALTAI---PEEIGCLPSLEWLELRENNFESLPVSIKQLS--RLKRLDLSNCSMLQSIP 849 (1170)
Q Consensus 783 ~~l~~L~~L~L~~~~l~~i---p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~L~~c~~l~~lp 849 (1170)
.++++|+.|+|++|+|+.+ |..+..+++|+.|+|++|+|+.+. .+..+. +|+.|+|++|+....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4567788888888877764 345557778888888888777653 333333 78888888887665555
No 237
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.07 E-value=0.00021 Score=69.77 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 186 GLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57899999988887765321222447899999999999999997654
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.07 E-value=0.0038 Score=68.90 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..+.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45688999999999999999999988433
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=0.0029 Score=76.20 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=37.2
Q ss_pred ccccchhHHHHHHHHhhc----CCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 186 GLVGLSSRIECIKSLLCT----GLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..+|.+...+.+.+.+.. .......+.++|++|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 478888877777554331 11245689999999999999999999887543
No 240
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.91 E-value=0.0056 Score=72.22 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=39.3
Q ss_pred CCCccccchhHHHHHHHHhh---cCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 183 SSKGLVGLSSRIECIKSLLC---TGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+.++|.+..++.+..++. .+....+-+.++|++|.|||++|+++++.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34689999998887665443 3333345789999999999999999999875
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.87 E-value=0.0016 Score=63.85 Aligned_cols=37 Identities=22% Similarity=0.480 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
....++|+|..|.|||||++.++......-...+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3468999999999999999999997754311255554
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.85 E-value=0.02 Score=61.51 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=81.0
Q ss_pred CCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
...++++|.+...+++..+... +-.-.+-+.|+|.+|.||||||+.++..... ..+.+. ... ...
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~-~~~ 87 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSD-FVE 87 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHH-HHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHH-HHH
Confidence 3446788888777666654321 0011123899999999999999999987652 223332 111 111
Q ss_pred C-cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh-cCCCeEEEEeCCCCh----------------HHHHHHHcccCC
Q 046888 252 G-VGLVHLHKQVVSLLLGERLETGGPNIPAYALERL-RRTKVFMVLDDVSEF----------------EQLKYLVGWLDG 313 (1170)
Q Consensus 252 ~-~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L-~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~ 313 (1170)
. .+.. ... +. .+.+.. .....++++|+++.. ..+..+...+..
T Consensus 88 ~~~~~~--~~~----------------i~-~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g 148 (254)
T 1ixz_A 88 MFVGVG--AAR----------------VR-DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 148 (254)
T ss_dssp SCTTHH--HHH----------------HH-HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred HHhhHH--HHH----------------HH-HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC
Confidence 0 1100 000 00 011222 234678999998421 112333333332
Q ss_pred CC--CCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 314 FC--PGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 314 ~~--~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
.. ....++.||....++... ..+ ..++++..+.++-.+++..++
T Consensus 149 ~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 149 FEKDTAIVVMAATNRPDILDPALLRPGRFD--RQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCTTCCEEEEEEESCGGGSCGGGGSTTSSC--EEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEccCCchhCCHHHcCCCcCC--eEEeeCCcCHHHHHHHHHHHH
Confidence 21 222345566655443221 233 678999999998888887765
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.83 E-value=0.0018 Score=80.52 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=88.6
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
+.+.|.+..+++|++.+.. +....+-|.++|++|.|||+||++++++.... ++..+..+..+...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 5688999999998877541 12345789999999999999999999866433 33333322122222
Q ss_pred CHH-HHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCCC--CC
Q 046888 254 GLV-HLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGFC--PG 317 (1170)
Q Consensus 254 ~~~-~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~~--~g 317 (1170)
+-. ...+.+ +.......+.+|++|+++.. .....|+..++... .+
T Consensus 280 gese~~lr~l-------------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESESNLRKA-------------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHHHHHHHH-------------------HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHHHHHHHH-------------------HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 211 111222 22333567899999998531 11333443332221 23
Q ss_pred cEEEEEeCChhHHH-Hh----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 318 SRIVVTTRDKQVLR-KQ----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 318 srIIiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
-.||.||.....+. .+ ..+ ..++++..+.++..++|..+.
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd--~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFD--REVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSC--EEEECCCCCHHHHHHHHHHTC
T ss_pred EEEEEecCChhhcCHHHhCCcccc--eEEecCCCCHHHHHHHHHHHh
Confidence 34555555443221 11 233 678999999999999998776
No 244
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.81 E-value=0.017 Score=63.11 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=82.1
Q ss_pred CCCCccccchhHHHHHHHHhhc----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhc
Q 046888 182 DSSKGLVGLSSRIECIKSLLCT----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIEN 251 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 251 (1170)
...++++|.+...+++..+... +-.-.+-+.|+|.+|.||||||+.++..... ..+.+. ... ...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~-~~~ 111 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSD-FVE 111 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHH-HHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHH-HHH
Confidence 3446788988877777654421 0011123899999999999999999987652 223332 111 111
Q ss_pred CcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCC
Q 046888 252 GVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFC 315 (1170)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~ 315 (1170)
...- ..... +.......-...+.++++|+++.. ..+..+...+....
T Consensus 112 ~~~~-~~~~~----------------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 112 MFVG-VGAAR----------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp STTT-HHHHH----------------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HHhh-HHHHH----------------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1000 00000 000111111235678999998421 11334444443222
Q ss_pred C--CcEEEEEeCChhHHHH-----hCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 316 P--GSRIVVTTRDKQVLRK-----QGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 316 ~--gsrIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
. ...++.||....++.. ...+ ..++++..+.++-.+++..++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFD--RQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSC--CEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCC--eEEEeCCcCHHHHHHHHHHHH
Confidence 2 2234456655543221 1233 678999999999888888765
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.80 E-value=0.0038 Score=78.79 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=84.3
Q ss_pred CccccchhHHHHHHHHhhcCC-------CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGL-------PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVH 257 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 257 (1170)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+++++.....-...+.+ +..+ ........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~-~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSE-YMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGG-GCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echh-cccccccc-
Confidence 468999999888887765321 1123699999999999999999999874432333333 3333 11111111
Q ss_pred HHHHHHHHHhcCcccCCCCChhHHHHHHhc-CCCeEEEEeCCCCh--HHHHHHHcccCC-----------CCCCcEEEEE
Q 046888 258 LHKQVVSLLLGERLETGGPNIPAYALERLR-RTKVFMVLDDVSEF--EQLKYLVGWLDG-----------FCPGSRIVVT 323 (1170)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~-~kk~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gsrIIiT 323 (1170)
...+. ..++ ...-+|+||+++.. +....|+..+.. .....+||+|
T Consensus 568 -----------------~~~l~----~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 -----------------GGQLT----EKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp --------------------CH----HHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred -----------------cchhh----HHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 11111 2222 23348899999753 333444332221 1234588888
Q ss_pred eCCh-----hH----HHH------hCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 324 TRDK-----QV----LRK------QGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 324 TR~~-----~v----~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
|... .+ ... ...+ .++.+++++.++-.+++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~--~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRID--EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSS--EEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCC--eEEecCCCCHHHHHHHHHHHH
Confidence 8731 11 011 1233 588999999998888876654
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.017 Score=62.89 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=80.6
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCc
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGV 253 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 253 (1170)
.++.|.+...++|.+.+.. +-.-.+-++|+|++|.||||||+.++..... ..+.+. ..+ +...+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~-l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPE-LLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTT-TCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHH-HHhhh
Confidence 4567777777777654320 1111123999999999999999999987643 223332 111 11111
Q ss_pred CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCC--CCCc
Q 046888 254 GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGF--CPGS 318 (1170)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~gs 318 (1170)
.....+ .+..+. ...-...+.++++|+++.. .....+...+... ....
T Consensus 85 -~~~~~~-~i~~vf---------------~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 -VGESER-AVRQVF---------------QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp -THHHHH-HHHHHH---------------HHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred -hhHHHH-HHHHHH---------------HHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 111111 111111 0111345678889998642 1122333333221 1233
Q ss_pred EEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 319 RIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 319 rIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
-++.+|....++... ..+ ..+.++..+.++..+++..+.
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd--~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLD--KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSC--EEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCC--eEEEeCCcCHHHHHHHHHHHH
Confidence 455667666543321 344 778899999999999998765
No 247
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.67 E-value=0.0066 Score=68.29 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36899999998888777543 358899999999999999999876543
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.57 E-value=0.0073 Score=67.08 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCccccch----hHHHHHHHHhhcCCC-CeEEEEEEecCCChHHHHHHHHHHHHh-ccCCceEEEE
Q 046888 184 SKGLVGLS----SRIECIKSLLCTGLP-DVRIVGIWGMGGIGKTTIVKALFNQIS-NEFEGKCFIE 243 (1170)
Q Consensus 184 ~~~~vGr~----~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 243 (1170)
.++|++.+ ..++.+.+++..... ..+.+.|+|.+|+|||+||.++++... .+...+.++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34566433 234445555543222 246789999999999999999999876 5444455554
No 249
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.36 E-value=0.0028 Score=58.01 Aligned_cols=72 Identities=6% Similarity=0.015 Sum_probs=51.8
Q ss_pred CCccEEeccccccccCchHHHHHHHHhcCCCcEEecCCCCCCCcchHHHHHHhhccceEEEEeccCcccCCCcHHHHHHH
Q 046888 8 CNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDEDLNRGDEISPALLNAIEGSKISVIIFSKDYASSKWCPNELVNI 87 (1170)
Q Consensus 8 ~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~ 87 (1170)
.+|.|||||+.+|. .+.|...|.+.|+. |.| +.|+.|.++||+.++..+.|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 47999999999982 44455555455553 333 568899999999999888999999999765
Q ss_pred HHhhhcCCcEEEEEE
Q 046888 88 LKCKNLNGQIVIPIY 102 (1170)
Q Consensus 88 ~~~~~~~~~~v~pif 102 (1170)
.+ .+..++-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 53 344455553
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.33 E-value=0.027 Score=66.49 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=84.0
Q ss_pred CCCccccchhHHHHHHHHhhc--C--------CCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 183 SSKGLVGLSSRIECIKSLLCT--G--------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
..++++|.+..++++.++... . ..-.+-|.|+|.+|.||||||++++...... .+.+. ..+ ....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~-~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSD-FVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGG-GTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhH-HHHh
Confidence 446789998887777765431 0 0112348999999999999999999876422 22332 211 1111
Q ss_pred c-CHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCC
Q 046888 253 V-GLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFC 315 (1170)
Q Consensus 253 ~-~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~ 315 (1170)
+ +.. ..-+..+.. ..-...+.++++|+++.. ..+..++..+..+.
T Consensus 104 ~~g~~---~~~v~~lfq---------------~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 104 FVGVG---AARVRDLFE---------------TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp CTTHH---HHHHHHHTT---------------TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred hhhhH---HHHHHHHHH---------------HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 1 110 011111110 000123578999998421 12344544444322
Q ss_pred --CCcEEEEEeCChhHHHHh-----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 316 --PGSRIVVTTRDKQVLRKQ-----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 316 --~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
.+..|+.||.....+... ..+ ..+.++..+.++-.+++..++
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfd--r~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFD--RQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSC--CEEECCCCCHHHHHHHHHHTT
T ss_pred cCccEEEEEecCChhhcCcccccccccc--eEEecCCCCHHHHHHHHHHHH
Confidence 234555666665543321 223 578999999999999987765
No 251
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.31 E-value=0.018 Score=66.01 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...+.++|.+|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998773
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.016 Score=73.18 Aligned_cols=152 Identities=17% Similarity=0.237 Sum_probs=84.6
Q ss_pred CCccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcC
Q 046888 184 SKGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENG 252 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 252 (1170)
-+.++|.+..+++|.+++.. +-...+.|.|+|.+|+||||||+.++......| +.+ +..+.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhhh
Confidence 36799999999998887753 223456799999999999999999988764332 222 211101111
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh-------------HHHHHHHcccCCC--CCC
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF-------------EQLKYLVGWLDGF--CPG 317 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~g 317 (1170)
.+.. ... +...+.......+.++++|+++.. .....+...+... ..+
T Consensus 279 ~g~~--~~~----------------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 279 AGES--ESN----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp TTHH--HHH----------------HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred hhhH--HHH----------------HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 1110 000 111111223346789999998321 1122222222111 133
Q ss_pred cEEEEEeCChhHHHH-h----CCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 318 SRIVVTTRDKQVLRK-Q----GVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 318 srIIiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
-.+|.||.....+.. . ..+ ..+.+...+.++..+++..++
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~--~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFD--REVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSC--EEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccc--cccccCCCCHHHHHHHHHHHH
Confidence 456666655422211 1 122 567888889999888887765
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.15 E-value=0.085 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 254
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.96 E-value=0.012 Score=61.49 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=31.4
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.|..++..+-..-.+++|+|.+|+||||||+.++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444533334456899999999999999999987 2 224566665
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.91 E-value=0.025 Score=72.12 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=38.8
Q ss_pred CccccchhHHHHHHHHhhcC-------CCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 185 KGLVGLSSRIECIKSLLCTG-------LPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..++|.+..++.+...+... ......+.|+|.+|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999888887776531 112357899999999999999999997743
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.74 E-value=0.011 Score=74.62 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHhhcCC-------CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGL-------PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899998888877664211 123478999999999999999999877
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.54 E-value=0.081 Score=52.69 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=18.8
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKAL 228 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v 228 (1170)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 258
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.40 E-value=0.0056 Score=67.16 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
..+++.|+|++|+||||||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999886
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.27 E-value=0.061 Score=59.78 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHHH-hhhhHHHHHHHHHHHhhcccCCCCcccCCCchhHHHHHHHHhhhhhcccccCCCCCCCccccchh
Q 046888 114 TGTFGEGFVRLEQQ-FKEKAETVQKWRDVMTQTSYLSGHESTKIRPEAMLVEVIVKDILKKLECTSMSSDSSKGLVGLSS 192 (1170)
Q Consensus 114 ~g~~~~~~~~~~~~-~~~~~~~v~~w~~aL~~v~~~~g~~~~~~~~e~~~i~~iv~~i~~~l~~~~~~~~~~~~~vGr~~ 192 (1170)
+..+...+...... -..+++.++..+.+|-+. + -..+..+++++.+.++.. . ...... =+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----d-------v~~~~~~~~~~~~~~~~~-~---~~~~~~--~~~~ 77 (320)
T 1zu4_A 15 AFNFSKDIKKLSKKYKQADDEFFEELEDVLIQT----D-------MGMKMVLKVSNLVRKKTK-R---DTSFEN--IKDA 77 (320)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHT----T-------CCHHHHHHHHHHHHHHCC-T---TCCHHH--HHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc----C-------CCHHHHHHHHHHHHHHHh-h---chhHHH--HHHH
Confidence 34455555444332 112345556666666431 1 123556667776665551 1 001111 1122
Q ss_pred HHHHHHHHhhcCC------------CCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 193 RIECIKSLLCTGL------------PDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 193 ~~~~l~~~L~~~~------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
-.++|.+++.... ...++|+|+|.+|+||||++..++..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 78 LVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp HHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 2344555554221 346799999999999999999999877654
No 260
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.22 E-value=0.0058 Score=62.41 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=14.8
Q ss_pred CCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcC
Q 046888 786 FSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRE 818 (1170)
Q Consensus 786 ~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~ 818 (1170)
+.|+.|+|++|.|.. +-..+..-++|+.|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 445555555554442 233333344455555543
No 261
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.21 E-value=0.019 Score=60.48 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.-.+++|.|.+|.|||||++.++......-..+.|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3468999999999999999999976543323445543
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.19 E-value=0.044 Score=60.22 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=27.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
.++++++|.+|+||||++..++..+..+-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999998776543334444
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.14 E-value=0.12 Score=57.04 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhcC------CCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 192 SRIECIKSLLCTG------LPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 192 ~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.-.++|.+.+... ....++++|+|.+|+||||++..++..++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 3345566665432 1345799999999999999999999877654
No 264
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.00 E-value=0.048 Score=61.31 Aligned_cols=50 Identities=28% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...|-.+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456666675 34445689999999999999999999987655434466775
No 265
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.92 E-value=0.38 Score=54.00 Aligned_cols=156 Identities=12% Similarity=-0.027 Sum_probs=97.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh-ccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS-NEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
-.++..++|..|.||++.|+.+...+. ..|+....+. .....++..+...... .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~-------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-----IDPNTDWNAIFSLCQA-------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-----CCTTCCHHHHHHHHHH-------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-----ecCCCCHHHHHHHhcC-------------------cC
Confidence 356889999999999999999988764 3454322221 1122344433332211 12
Q ss_pred hcCCCeEEEEeCCCC---hHHHHHHHcccCCCCCCcEEEEEeCC-------hhHHHHhCCCCcceEeecCCCHhHHHHHH
Q 046888 286 LRRTKVFMVLDDVSE---FEQLKYLVGWLDGFCPGSRIVVTTRD-------KQVLRKQGVKDEHVYEVERLNEDEGLELF 355 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf 355 (1170)
+-+++-++|+|+++. .+..+.|...+....+++.+|++|-. ..+...... ....++..+++.++..+.+
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHHHH
Confidence 345566788899865 34566666665555567777776643 244454422 2268999999999999888
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046888 356 YKYAFRQNHRPEHLTVLSKKAVRYAEGNPLALEV 389 (1170)
Q Consensus 356 ~~~af~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 389 (1170)
...+-..+. .-..+.+..+++.++|...++..
T Consensus 152 ~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 152 AARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 877633221 12234567788899998876654
No 266
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.89 E-value=0.039 Score=52.46 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=42.3
Q ss_pred CEEeCCCCCCC--CCCcccCCCCCCCEEECcCCCCcccccc-ccCCCCCCEEEecCCCC
Q 046888 789 NWLNLNNCALT--AIPEEIGCLPSLEWLELRENNFESLPVS-IKQLSRLKRLDLSNCSM 844 (1170)
Q Consensus 789 ~~L~L~~~~l~--~ip~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~ 844 (1170)
..++.++++++ .+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46777888887 788643 35788999999999888754 57788999999998874
No 267
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.88 E-value=0.042 Score=55.80 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=26.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..|-|++-.|.||||.|..++-+...+--.+.++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677777779999999999887766645556654
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.82 E-value=0.011 Score=63.78 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=64.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEech-hhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVR-EEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~-~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
.-.+++|+|..|.|||||++.+...+...+.+.+++.... +...+... . + +.......+...+...+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~----~---v~q~~~gl~~~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--S----I---VNQREVGEDTKSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--S----E---EEEEEBTTTBSCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--e----e---eeHHHhCCCHHHHHHHHHHH
Confidence 4478999999999999999999887655445555543210 00000000 0 0 00000000113445566677
Q ss_pred hcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHH
Q 046888 286 LRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVL 330 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~ 330 (1170)
|...+=++++|...+.+....+.... ..|.-|++||-+..+.
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 77778889999997766655444332 2466788888776543
No 269
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.72 E-value=0.015 Score=65.77 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceE-EEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKC-FIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLR 287 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~ 287 (1170)
.+++|+|..|.|||||.+.+...+.......+ .+.+..+ ...... .. . +...............+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~~~~~-~~----~---v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FVHESK-KC----L---VNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SCCCCS-SS----E---EEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hhhhcc-cc----c---eeeeeeccccCCHHHHHHHHhh
Confidence 48999999999999999999887655433333 3322111 000000 00 0 0000000122344556778899
Q ss_pred CCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhHH
Q 046888 288 RTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQVL 330 (1170)
Q Consensus 288 ~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~ 330 (1170)
..+=+|++|...+.+.++.+.... ..|-.||+|+-+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999877766655432 2355688888876554
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.68 E-value=0.029 Score=58.27 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+++|.+.+........+|+|+|..|.|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344343332234567999999999999999999988765
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.56 E-value=0.058 Score=55.62 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=33.5
Q ss_pred chhHHHHHHHHhhc-CCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 190 LSSRIECIKSLLCT-GLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 190 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
|++.++++.+.+.. ......+|+|.|..|.||||+|+.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45566666665543 2345689999999999999999999887643
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.56 E-value=0.013 Score=61.28 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=57.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccC---CCCChhHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLET---GGPNIPAYALE 284 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~l~~~l~~ 284 (1170)
-.++.|+|..|+||||+|..++++...+-..+.++....+ .. +. .++++.++...... ....+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d---~r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID---TR-SI----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---GG-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC---ch-HH----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 4689999999999999999999987665444454432111 00 10 11111211110000 11112222222
Q ss_pred HhcCC-CeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 285 RLRRT-KVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 285 ~L~~k-k~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
.+.+. .-+||+|.+.. .++++.+....+ .|-.||+|-++.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 22223 44999999853 345554433222 267899999853
No 273
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.40 E-value=0.063 Score=66.72 Aligned_cols=150 Identities=17% Similarity=0.283 Sum_probs=79.1
Q ss_pred CccccchhHHHHHHHHhhc-----------CCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE-echhhhhcC
Q 046888 185 KGLVGLSSRIECIKSLLCT-----------GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE-NVREEIENG 252 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~ 252 (1170)
..+.|.+...++|.+.+.. +....+-|.++|++|.|||.+|++++++.... |+. ...+
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~v~~~~----- 546 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIKGPE----- 546 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEECCHHH-----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEEeccch-----
Confidence 5677888888888776542 11234568899999999999999999876432 222 1111
Q ss_pred cCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcCCCeEEEEeCCCCh----------------HHHHHHHcccCCCCC
Q 046888 253 VGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRRTKVFMVLDDVSEF----------------EQLKYLVGWLDGFCP 316 (1170)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~kk~LlVLDdv~~~----------------~~~~~l~~~~~~~~~ 316 (1170)
+...........+.+.+...-+..+.+|++|+++.. ..+..|+..++....
T Consensus 547 -------------l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 547 -------------LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -------------HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred -------------hhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 111111111111222222223456899999998531 013445555544333
Q ss_pred CcE-EEE-EeCChh-----HHHHhCCCCcceEeecCCCHhHHHHHHHHHH
Q 046888 317 GSR-IVV-TTRDKQ-----VLRKQGVKDEHVYEVERLNEDEGLELFYKYA 359 (1170)
Q Consensus 317 gsr-IIi-TTR~~~-----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1170)
... +|| ||-... +++.-..+ ..+.++.-+.++..++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd--~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLD--QLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSC--CEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcce--EEEEECCcCHHHHHHHHHHHh
Confidence 332 333 443222 22211344 678888888888888887765
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.36 E-value=0.017 Score=58.24 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|.|.|++|.||||+|+.+..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988764
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.31 E-value=0.16 Score=55.50 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHhh----cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC--CceEEEE
Q 046888 195 ECIKSLLC----TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF--EGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 243 (1170)
.+|-..|. .+-..- ++-|.|.+|+||||||.+++.....++ ..++|+.
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34555565 333333 789999999999999999888766542 4567775
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.31 E-value=0.024 Score=59.05 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...++|.|.|++|.||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998865
No 277
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.18 E-value=0.22 Score=53.12 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..-+..++....+....+.++|++|.|||.+|.++++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344667775432435579999999999999999998853
No 278
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.11 E-value=0.14 Score=57.80 Aligned_cols=53 Identities=30% Similarity=0.351 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 191 SSRIECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 191 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..-...|-.+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 333455666664 33344568999999999999999999887654444677776
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.08 E-value=0.034 Score=63.30 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHHHhh-------------cCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 186 GLVGLSSRIECIKSLLC-------------TGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888888777662 1111345689999999999999999998763
No 280
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.05 E-value=0.23 Score=55.88 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 194 IECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...|-.+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445566665 34345678999999999999999999877654444567775
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.03 E-value=0.025 Score=56.53 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|.|++|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 282
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.00 E-value=0.12 Score=50.69 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=73.9
Q ss_pred CccEEecc--------------ccccccCchHHHHHHHHhcCCCcEEecC-CCC----C----CCcchHHHHHHhhccce
Q 046888 9 NYDVFLSF--------------RGEDTRENFTSHLYAALCGKKIKTFIDE-DLN----R----GDEISPALLNAIEGSKI 65 (1170)
Q Consensus 9 ~~dvFis~--------------~~~d~~~~f~~~l~~~L~~~g~~~~~d~-~~~----~----g~~~~~~i~~ai~~s~~ 65 (1170)
+--+|+.| ..+| .....-|...-....+..|.|. +.. - -+.|-+.|.++|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578999 3455 4456777777777677677785 442 2 34588899999999999
Q ss_pred EEEEeccCcccCCCcHHHHHHHHHhhhcCCcEEEEEEeeeC-ccccccccccHH
Q 046888 66 SVIIFSKDYASSKWCPNELVNILKCKNLNGQIVIPIYYHVS-PSDVRKQTGTFG 118 (1170)
Q Consensus 66 ~i~v~S~~y~~s~wcl~El~~~~~~~~~~~~~v~pif~~v~-ps~vr~~~g~~~ 118 (1170)
+|+++|++...|.|-..|+..+.. +.+.+||-|.-+-+ .++++...|++.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 999999999999999999987772 34556777764433 234554445543
No 283
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.95 E-value=0.2 Score=56.50 Aligned_cols=53 Identities=32% Similarity=0.378 Sum_probs=38.1
Q ss_pred hhHHHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 191 SSRIECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 191 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
..-...|-.+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 333445556664 33345578999999999999999999887655444677776
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.94 E-value=0.39 Score=55.31 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
..++|.++|.+|+||||++..++..++.+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998776553333333
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.86 E-value=0.12 Score=59.75 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=25.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..++|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887765
No 286
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.84 E-value=0.11 Score=57.75 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=45.8
Q ss_pred cchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHH
Q 046888 189 GLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLL 266 (1170)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 266 (1170)
|...-+..|..++ .+-..-.++.|.|.+|+||||||..++.....+-..++|+. . ......+...+++..
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-----l--E~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-----L--EMGKKENIKRLIVTA 119 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-----S--SSCHHHHHHHHHHHH
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----C--CCCHHHHHHHHHHHH
Confidence 3333344555555 44445578999999999999999999876654435566664 2 345566666665543
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.83 E-value=0.063 Score=58.79 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=25.8
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.....+|+|+|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 355789999999999999999999887654
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.83 E-value=0.052 Score=60.44 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=33.9
Q ss_pred ccchhHHHHHHHHhhc--CCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 188 VGLSSRIECIKSLLCT--GLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
|+.+...+++.+.+.. ..+....|.|+|++|.||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444445555444432 234566799999999999999999998766554
No 289
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.82 E-value=0.029 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++|+|+|++|.||||+|+.++.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998773
No 290
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.74 E-value=0.03 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 291
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.64 E-value=0.046 Score=64.58 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=36.6
Q ss_pred ccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 186 GLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++|.+..++.+...+..+ .-|.|+|.+|+|||+||+++++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 6899999998888777544 368899999999999999998765
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.56 E-value=0.065 Score=55.42 Aligned_cols=89 Identities=22% Similarity=0.210 Sum_probs=47.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceEEEEe---chhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIEN---VREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
+|.|.|++|+||||.|+.++.++. ...++. +|+.+.....+....+..+ ........+.+...+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~----~~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYM----ERGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHH----HHTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHH----hcCCcCCHHHHHHHHHHhh
Confidence 477999999999999999987652 233331 1221211111111111111 1111112233444555677
Q ss_pred cCCCeEEEEeCC-CChHHHHHHH
Q 046888 287 RRTKVFMVLDDV-SEFEQLKYLV 308 (1170)
Q Consensus 287 ~~kk~LlVLDdv-~~~~~~~~l~ 308 (1170)
..... +|||+. .+..|.+.|.
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHHH
Confidence 65554 689998 4556666554
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.51 E-value=0.064 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.+|.|.|++|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.47 E-value=0.071 Score=54.84 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...+|+|+|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998875
No 295
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.44 E-value=0.022 Score=58.07 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=61.2
Q ss_pred ccCCCCCCEEEccCC-CCCCcCcCCcccCccccCCCCCCCEEeCCCCCCCC-----CCcccCCCCCCCEEECcCCCCc--
Q 046888 751 FENIEGLGTLGLERS-QLPHLLSGLVSLPASLLSGLFSLNWLNLNNCALTA-----IPEEIGCLPSLEWLELRENNFE-- 822 (1170)
Q Consensus 751 l~~l~~L~~L~L~~~-~~~~~~~~l~~lp~~~l~~l~~L~~L~L~~~~l~~-----ip~~l~~l~~L~~L~L~~n~l~-- 822 (1170)
+.+-+.|+.|+|++| .+... +...+-.. +..-++|+.|+|++|.|.+ +...+..-+.|+.|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~--ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE--RIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH--HHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHH--HHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 345677888888875 54321 11122222 5566789999999998874 4455666788999999999887
Q ss_pred ---cccccccCCCCCCEEEecCCC
Q 046888 823 ---SLPVSIKQLSRLKRLDLSNCS 843 (1170)
Q Consensus 823 ---~lp~~l~~l~~L~~L~L~~c~ 843 (1170)
.+-..+..-+.|+.|+|++|.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHHhhCCceeEEECCCCc
Confidence 344556677789999998764
No 296
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.37 E-value=0.14 Score=57.04 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...+++|+|..|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999866543
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.29 E-value=0.042 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.++|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.23 E-value=0.25 Score=56.93 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
..++|+++|.+|+||||++..++..++.+-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998776543333333
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.10 E-value=0.048 Score=54.80 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.00 E-value=0.083 Score=56.29 Aligned_cols=40 Identities=18% Similarity=-0.021 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 193 RIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+.++.+.+.........|+|.|++|+||||+|+.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344443333223355789999999999999999998765
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.97 E-value=0.088 Score=53.34 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
...+|+|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999998754
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.97 E-value=0.16 Score=58.75 Aligned_cols=32 Identities=31% Similarity=0.688 Sum_probs=25.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKC 240 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 240 (1170)
+.++|+|.+|+||||||..+......++...+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 35899999999999999999987665544333
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.96 E-value=0.068 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|.|.|++|.||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 304
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.96 E-value=0.051 Score=61.87 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=62.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE-EechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI-ENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALER 285 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~ 285 (1170)
...+++|+|..|.||||+++.+...+.....+.+.+ .+..+ ....... . + +.......+...+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~~~~~~~-~----~---v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YVFKHKK-S----I---VNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-SCCCCSS-S----E---EEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-hhhccCc-e----E---EEeeecCCCHHHHHHHHHHH
Confidence 346899999999999999999998765543444433 21110 0000000 0 0 00000000123445566677
Q ss_pred hcCCCeEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 046888 286 LRRTKVFMVLDDVSEFEQLKYLVGWLDGFCPGSRIVVTTRDKQ 328 (1170)
Q Consensus 286 L~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~ 328 (1170)
++..+=+|++|.+.+.+.+..++... ..|..|+.|+-+..
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 88788899999998777655544332 24556777776544
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.92 E-value=0.037 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988653
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.91 E-value=0.087 Score=52.36 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..++++|.|..|.|||||+..+...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999987654
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.89 E-value=0.18 Score=55.49 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...+++|+|..|+||||+++.++..++.. .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 35799999999999999999999876543 3444443
No 308
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.89 E-value=0.052 Score=55.27 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
...+++|+|++|.|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.88 E-value=0.18 Score=58.63 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...+++|+|..|+|||||++.++..++.. .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999999876543 3455553
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.81 E-value=0.041 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+.|.|+|++|.||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.71 E-value=0.064 Score=60.52 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=35.6
Q ss_pred CCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 182 DSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...+.++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 344679999886655443332211 22389999999999999999998764
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.66 E-value=0.06 Score=57.79 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|.|.|++|.||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998763
No 313
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.66 E-value=0.44 Score=53.56 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=27.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
...+++|+|..|+||||+++.++..++.. .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35799999999999999999999876543 344444
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.65 E-value=0.06 Score=54.69 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=23.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987753
No 315
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.62 E-value=0.16 Score=48.09 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCCEEeCCCCCCCCCCc-ccCCCCCCCEEECcCCCCc
Q 046888 787 SLNWLNLNNCALTAIPE-EIGCLPSLEWLELRENNFE 822 (1170)
Q Consensus 787 ~L~~L~L~~~~l~~ip~-~l~~l~~L~~L~L~~n~l~ 822 (1170)
+|+.|+|++|+|+.+|. .+..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57777777777777754 3566788888888888664
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.60 E-value=0.047 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|+|.|+.|.||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 317
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.59 E-value=0.036 Score=56.24 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=23.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
|.|.|+|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999987765544
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.56 E-value=0.085 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...+|+|.|+.|.||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998876
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.56 E-value=0.057 Score=55.51 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=22.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.55 E-value=0.058 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.54 E-value=0.084 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.52 E-value=0.094 Score=53.29 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=24.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.+++|+|+.|.|||||++.++.. ..+.+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 57899999999999999999752 33445554
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.43 E-value=0.05 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+|+|.|++|.||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988763
No 324
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.43 E-value=0.26 Score=57.63 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEEechhhhhcCcCHHHHHHHHHHHHh
Q 046888 189 GLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1170)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1170)
|...-+..|..++ .+-..-.++.|.|.+|+||||||..++..+..+ -..++|+. -..+...+...++....
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-------lE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-------LEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-------SSSCHHHHHHHHHHHHT
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-------CCCCHHHHHHHHHHHHc
Confidence 3333344555555 444455789999999999999999999876543 23455654 23445566666665543
No 325
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.38 E-value=0.11 Score=57.42 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=28.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+..|+|+|.|-||+||||.|..++--++..-..+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46799999999999999999988887765443344443
No 326
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.31 E-value=0.063 Score=54.21 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988654
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.28 E-value=0.079 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+|+|.|++|.||||+|+.+..++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998765
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.25 E-value=0.07 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|+|.|++|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998866
No 329
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.17 E-value=0.11 Score=52.85 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=33.4
Q ss_pred ccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 188 VGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
|....-+..+..++.. -+..+.+.|+|++|.||||+|.++++.+..
T Consensus 39 ~~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 39 IEFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CCHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334446667776643 333457999999999999999999988753
No 330
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.14 E-value=2.1 Score=48.69 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 186 GLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++|....++++.+.+..-...-..|.|.|.+|+|||++|+.+...-
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 46777777777666554322222235899999999999999987743
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.10 E-value=0.077 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|.|++|.||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.10 E-value=0.12 Score=53.56 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
..+|+|.|+.|.||||+|+.+.+++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999876543
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.09 E-value=0.06 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|+|.|++|.||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988763
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.07 E-value=0.12 Score=53.39 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
.+|+|.|++|+||||+|+.+..++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999999876543
No 335
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.04 E-value=0.08 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
...|+|+|+.|.||||+|+.+..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999876
No 336
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.03 E-value=0.73 Score=53.86 Aligned_cols=63 Identities=10% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC-CceEEEEechhhhhcCcCHHHHHHHHHH
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF-EGKCFIENVREEIENGVGLVHLHKQVVS 264 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1170)
+..|..++ .+-..-.++.|.|.+|+||||||..++..+.... ..++|+. .......+...++.
T Consensus 190 ~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s-------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 190 FTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS-------LEMSAQQLVMRMLC 253 (454)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE-------SSSCHHHHHHHHHH
T ss_pred cHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHH
Confidence 34444444 3334456899999999999999999998765432 2455654 12334555555544
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.99 E-value=0.084 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...|+|.|++|.||||+|+.+++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 338
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.95 E-value=0.2 Score=55.71 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=46.8
Q ss_pred cccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHH
Q 046888 187 LVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLL 266 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 266 (1170)
+.|...-+..|..++. +-..-.++.|.|.+|+||||||..++.....+-..++|+. -.....++...+++..
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-------LEMSAEQLALRALSDL 97 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-------SSSCHHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-------CCCCHHHHHHHHHHHh
Confidence 3344444455555553 3344568999999999999999999887654333455553 2345566777666654
Q ss_pred h
Q 046888 267 L 267 (1170)
Q Consensus 267 ~ 267 (1170)
.
T Consensus 98 ~ 98 (338)
T 4a1f_A 98 T 98 (338)
T ss_dssp H
T ss_pred h
Confidence 4
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.95 E-value=0.084 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.|+|.|++|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 340
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.94 E-value=2.3 Score=47.99 Aligned_cols=48 Identities=25% Similarity=0.219 Sum_probs=35.0
Q ss_pred CccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 185 KGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..++|....+.++...+..-......|.|.|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 568898888877776654322222347799999999999999987644
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.92 E-value=0.099 Score=53.78 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....+|+|.|+.|.||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.92 E-value=0.095 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++|+|.|++|.||||+|+.+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 343
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.86 E-value=0.087 Score=56.44 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
....+|+|.|++|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 344
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.84 E-value=0.061 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=18.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|.|.|++|.||||+|+.+..++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987653
No 345
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.79 E-value=0.099 Score=53.66 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
....+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999874
No 346
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.79 E-value=0.55 Score=55.24 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=26.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
..++|+|+|.+|+||||++..++..++.+-..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 467999999999999999999998776542233444
No 347
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.78 E-value=0.063 Score=54.52 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
++++|.|+.|.|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765444
No 348
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.72 E-value=0.24 Score=52.29 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc------cCCceEEEE
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN------EFEGKCFIE 243 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 243 (1170)
.|..+|..+-..-.+++|+|.+|+||||||+.++..... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 444555433344568999999999999999999885322 134567775
No 349
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.67 E-value=0.26 Score=55.65 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.++...+........+|+|+|.+|+|||||+..+...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444444444567899999999999999999998876543
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.66 E-value=0.093 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.8
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+|+|+|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 351
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.65 E-value=0.14 Score=54.22 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=31.6
Q ss_pred HHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 199 SLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 199 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
++|..+-..-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 14 ~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 14 EILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 334333334468999999999999999998876554434566664
No 352
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.61 E-value=0.077 Score=54.78 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 353
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.60 E-value=0.091 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.57 E-value=0.097 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+|+|.|++|.||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988763
No 355
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.55 E-value=0.081 Score=54.84 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..++|+|+|+.|+|||||++.+...+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999876543
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.48 E-value=0.1 Score=53.99 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877543
No 357
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.48 E-value=0.12 Score=53.45 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...+|+|+|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988664
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.44 E-value=0.19 Score=52.67 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|..+|..+-..-.+++|+|..|.|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443333445799999999999999999998754
No 359
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.43 E-value=0.12 Score=55.74 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+|.|.|++|.||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 360
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.43 E-value=1.6 Score=47.35 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=31.8
Q ss_pred chHHHHHHhhccceEEEEeccCcccCCCcHHHHHHHHHhhhcCCcEEEEEEeeeC
Q 046888 52 ISPALLNAIEGSKISVIIFSKDYASSKWCPNELVNILKCKNLNGQIVIPIYYHVS 106 (1170)
Q Consensus 52 ~~~~i~~ai~~s~~~i~v~S~~y~~s~wcl~El~~~~~~~~~~~~~v~pif~~v~ 106 (1170)
....+.+.++++++.|.|+.-.-..+..+ .++.+.+ ++..++-|+=+.|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~D 61 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKAD 61 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECcc
Confidence 34578889999999999998766656555 2454443 2334555554555
No 361
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.42 E-value=0.28 Score=57.08 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=43.6
Q ss_pred cchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHH
Q 046888 189 GLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLL 266 (1170)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 266 (1170)
|...-+..|-.++ .+-..-.++.|.|.+|+||||||..++.....+-..++|+. -..+..++...+++..
T Consensus 179 gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS-------lEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 179 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-------LEMGKKENIKRLIVTA 248 (444)
T ss_dssp SBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC-------SSSCTTHHHHHHHHHH
T ss_pred CcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE-------CCCCHHHHHHHHHHHH
Confidence 3333344455555 24344568999999999999999999987655433455553 2234445555555443
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.37 E-value=0.11 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987753
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.37 E-value=0.11 Score=53.63 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
....+|+|+|++|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998764
No 364
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.30 E-value=0.11 Score=52.88 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...+|+|+|+.|.||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998763
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.29 E-value=0.17 Score=55.88 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=33.2
Q ss_pred cccchhHHHHHHHHhhcC--CCCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 187 LVGLSSRIECIKSLLCTG--LPDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|-...+..+...+... .....+|||.|..|.||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555554444332 34567999999999999999999987665
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.24 E-value=0.099 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...|.|.|++|.||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988763
No 367
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.15 E-value=0.13 Score=59.38 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHhhcC------------CCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 186 GLVGLSSRIECIKSLLCTG------------LPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.++|.+...+.+...+... ....+-|.++|++|+||||+|++++..+...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5788888777776555210 1124568999999999999999999877443
No 368
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.06 E-value=0.11 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+++|+|+.|.|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 369
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.03 E-value=0.11 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|+|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 370
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.02 E-value=0.12 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..+|+|+|+.|.|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999776
No 371
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.96 E-value=0.11 Score=53.53 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 372
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.95 E-value=0.1 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.88 E-value=0.15 Score=51.29 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..+|+|.|+.|.||||+|+.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999987643
No 374
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.84 E-value=0.098 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEEEEecCCChHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKAL 228 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v 228 (1170)
..+++|+|..|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999964
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.82 E-value=0.095 Score=55.92 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 376
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.81 E-value=0.4 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.+||.|++|.||||+|+.+.+++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998876
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.80 E-value=0.3 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987754
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.79 E-value=0.088 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
+|+|.|..|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 379
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.75 E-value=0.48 Score=53.19 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc------cCCceEEEE
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN------EFEGKCFIE 243 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 243 (1170)
..|-.+|..+-..-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455556444456689999999999999999999886432 223567775
No 380
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.72 E-value=0.72 Score=54.77 Aligned_cols=56 Identities=9% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEEEechhhhhcCcCHHHHHHHHHHHHh
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFIENVREEIENGVGLVHLHKQVVSLLL 267 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1170)
-..-.++.|.|.+|+||||||..++.....+ -..++|+. . .....++...++....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-----~--E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-----L--EESVEETAEDLIGLHN 295 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-----S--SSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-----c--cCCHHHHHHHHHHHHc
Confidence 3445689999999999999999999887654 33456654 2 3345566666655543
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.72 E-value=0.19 Score=54.93 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...+|.|.|++|.||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.68 E-value=0.13 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 383
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.54 E-value=0.35 Score=53.82 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc------CCceEEEE
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE------FEGKCFIE 243 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 243 (1170)
.|-.+|..+-..-.++.|+|.+|+||||||..++...... -..++|+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4445554333445689999999999999999998765332 23567775
No 384
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.43 E-value=0.14 Score=62.39 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 181 SDSSKGLVGLSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
+.....++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++..+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 344467899999998888877644 4799999999999999999998664443
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.42 E-value=0.12 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...|.|.|++|.||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.35 E-value=0.13 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.33 E-value=0.21 Score=51.98 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=32.1
Q ss_pred chhHHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 190 LSSRIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.+...+++...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 14 NKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444555555432 356899999999999999999998876544
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.30 E-value=0.13 Score=55.12 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999997763
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.28 E-value=0.17 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999998765
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.10 E-value=0.5 Score=54.29 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..++++|+|.+|+||||++..++..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877654
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.06 E-value=0.14 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 392
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.03 E-value=0.19 Score=53.52 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....+|+|.|..|.||||||+.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 393
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.02 E-value=0.19 Score=55.55 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
....+|+|.|..|.|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999988665
No 394
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.00 E-value=0.13 Score=52.69 Aligned_cols=25 Identities=44% Similarity=0.623 Sum_probs=22.3
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999987654
No 395
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.98 E-value=0.38 Score=50.11 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.+.+...+.. .....|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444544432 356889999999999999999998865443
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.96 E-value=0.22 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...+|.|.|++|.||||+|+.+..++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988653
No 397
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.95 E-value=1.1 Score=52.58 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=24.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFE 237 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1170)
+.+.|.|.+|.||||++..+...+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999987755443
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.93 E-value=0.35 Score=53.00 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=28.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCC-ceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFE-GKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 243 (1170)
..-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34468999999999999999999987654422 344553
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.92 E-value=0.17 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=22.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.85 E-value=0.16 Score=56.32 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.84 E-value=0.49 Score=52.73 Aligned_cols=88 Identities=22% Similarity=0.161 Sum_probs=52.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR 288 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~ 288 (1170)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+ ..... .. + .+.. ...+....+..+...|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e-~~~~~-~~---~----~i~~--~~ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEE-IVFKH-HK---N----YTQL--FFGGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCC-CCCSS-CS---S----EEEE--ECBTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeec-ccccc-ch---h----EEEE--EeCCChhHHHHHHHHhhh
Confidence 47999999999999999999875533 355666654322 11000 00 0 0000 000233444556677888
Q ss_pred CCeEEEEeCCCChHHHHHHH
Q 046888 289 TKVFMVLDDVSEFEQLKYLV 308 (1170)
Q Consensus 289 kk~LlVLDdv~~~~~~~~l~ 308 (1170)
++=++++|.+...+.++.+.
T Consensus 240 ~p~ilildE~~~~e~~~~l~ 259 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYN 259 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHH
T ss_pred CCCEEEEcCCChHHHHHHHH
Confidence 88899999998765555443
No 402
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.80 E-value=0.26 Score=54.18 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...+++|+|.+|+||||+++.++..++.. .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999999876544 3444443
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.72 E-value=0.16 Score=53.03 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.8
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.61 E-value=0.19 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALF 229 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~ 229 (1170)
...+|+|.|+.|.||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 405
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.56 E-value=0.19 Score=53.29 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=27.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHH-HhccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQ-ISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~ 243 (1170)
..-.++.|.|.+|+||||+|.+++.. ....-..++|+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34568999999999999999987754 333334455553
No 406
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.46 E-value=0.32 Score=47.73 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..-.+++|.|..|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999999865
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.45 E-value=0.19 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.6
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|.|++|.||||+|+.++.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 408
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.38 E-value=0.29 Score=55.44 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=25.8
Q ss_pred hhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 201 LCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 201 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+..+-...++++|+|++|.|||||++.++...
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33344456799999999999999999999754
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.37 E-value=0.2 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|+|.|++|.||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998866
No 410
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.36 E-value=0.27 Score=52.15 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=26.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh-ccCCceEEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS-NEFEGKCFIE 243 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 243 (1170)
.-.+++|+|..|.|||||++.++.... ..-...+++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 446899999999999999999985322 2234455553
No 411
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.33 E-value=0.47 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=27.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
.++|+|+|.+|+||||+|..++..++.+-..+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998765442333444
No 412
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.32 E-value=0.76 Score=53.03 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=27.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhc-cCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISN-EFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~ 242 (1170)
-+.++|.|.+|+|||+|+..+.+.+.. +-+.++|+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 357899999999999999999987643 33445554
No 413
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.28 E-value=0.17 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
-.+++|+|..|.|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.27 E-value=0.51 Score=54.52 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999987654
No 415
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.23 E-value=0.18 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=22.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..|+|.|+.|.||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 416
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.20 E-value=0.31 Score=53.43 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987763
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.20 E-value=0.22 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 418
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.18 E-value=0.33 Score=48.55 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.++++|+|..|.|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5789999999999999999999876543
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.14 E-value=0.16 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999887654
No 420
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.12 E-value=0.21 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.00 E-value=0.2 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
..|.|.|+.|.||||+|+.+++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 422
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.98 E-value=0.35 Score=53.33 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...++|+|+|-||+||||+|..++..++.+-..++.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35688999999999999999999987766533344443
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.93 E-value=0.18 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998765
No 424
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.87 E-value=0.38 Score=51.82 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=27.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
++|+|.|-||+||||+|..++..++.+-..++.+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999988775533344443
No 425
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.80 E-value=0.17 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=22.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.71 E-value=0.21 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
+++|+|..|+|||||++.++..++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998664
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.70 E-value=0.16 Score=55.59 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 428
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.56 E-value=0.15 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998754
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.49 E-value=0.41 Score=51.21 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=24.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998776
No 430
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.43 E-value=0.46 Score=56.67 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.-.+++|+|+.|.|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999998764
No 431
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.31 E-value=0.39 Score=55.67 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhc-cCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISN-EFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~ 243 (1170)
-+.++|.|.+|+|||+|+..+.+.+.. +-+.++|+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~ 201 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence 356899999999999999999987643 345556653
No 432
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.24 E-value=0.3 Score=53.91 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988665
No 433
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.21 E-value=1.1 Score=53.89 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=26.5
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
+++.|.|.+|.||||++..+...+...-..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 6889999999999999999988765543333333
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.16 E-value=0.68 Score=51.37 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 195 ECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..|-.+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554343456799999999999999999998753
No 435
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.04 E-value=0.41 Score=49.67 Aligned_cols=26 Identities=19% Similarity=0.094 Sum_probs=22.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47889999999999999999876554
No 436
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.98 E-value=0.47 Score=51.79 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=26.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
.++|+|.|-||+||||+|..++..+..+-..++.+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 36888899999999999999998776543333443
No 437
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.90 E-value=0.45 Score=52.07 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=27.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
..++++|+|.+|+||||++..++..++.. ...+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l 131 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLL 131 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45799999999999999999999877654 333444
No 438
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.89 E-value=0.26 Score=51.41 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988664
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.89 E-value=0.3 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
....+|+|.|+.|.||||+++.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998765
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.76 E-value=0.24 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.60 E-value=0.43 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
-.+++|+|.+|+||||||+.++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999876654
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.57 E-value=0.3 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 443
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.54 E-value=0.74 Score=51.54 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=26.0
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 205 LPDVRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
.....+|+|+|.+|.|||||+..+...+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999998766543
No 444
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.46 E-value=0.18 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=16.5
Q ss_pred eEEEEEEecCCChHHHHHHHHH-HHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALF-NQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 232 (1170)
..+++|+|+.|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 445
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.42 E-value=0.49 Score=47.75 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=21.8
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
+++.|+|..|.||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999877776543
No 446
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.35 E-value=0.3 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
..++|.|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 447
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.19 E-value=0.44 Score=56.04 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 193 RIECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
..+.+.+..........+|.+.|+.|.||||+|++++.++..
T Consensus 380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344444443211234578999999999999999999998864
No 448
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.13 E-value=1.3 Score=45.53 Aligned_cols=110 Identities=14% Similarity=0.021 Sum_probs=54.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHh
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERL 286 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L 286 (1170)
.-++..++|.-|.||||.|...+.+...+-..++.+.... ...++.. .+.+.++............ .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~---d~R~ge~----~i~s~~g~~~~a~~~~~~~-~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI---DNRYSEE----DVVSHNGLKVKAVPVSASK-DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGG-GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc---CCcchHH----HHHhhcCCeeEEeecCCHH-HHHHHH
Confidence 3478899999999999999988887765544444443211 1112222 2333332221111111111 111333
Q ss_pred cCCCeEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh
Q 046888 287 RRTKVFMVLDDVSE--FEQLKYLVGWLDGFCPGSRIVVTTRDK 327 (1170)
Q Consensus 287 ~~kk~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~ 327 (1170)
.++--+|++|.+.- .++++.+....+ .|-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 33334999998843 345544432222 367899999964
No 449
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.05 E-value=0.37 Score=54.16 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 196 CIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
.|..+|..+-..-+++.|+|.+|+|||||++.++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554444556899999999999999999998865
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.02 E-value=0.62 Score=48.90 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
....|+|.|+.|.||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 451
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.96 E-value=1.1 Score=61.01 Aligned_cols=48 Identities=33% Similarity=0.430 Sum_probs=36.3
Q ss_pred HHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 196 CIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
+|..+|. .+-...+.|.|+|++|+|||+||.++......+=..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555664 33345679999999999999999999987665545667775
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.80 E-value=0.28 Score=50.70 Aligned_cols=23 Identities=39% Similarity=0.244 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.+++|+|..|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998865
No 453
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=86.79 E-value=0.99 Score=48.38 Aligned_cols=28 Identities=4% Similarity=-0.095 Sum_probs=22.1
Q ss_pred hHHHHHHhhccceEEEEeccCcccCCCc
Q 046888 53 SPALLNAIEGSKISVIIFSKDYASSKWC 80 (1170)
Q Consensus 53 ~~~i~~ai~~s~~~i~v~S~~y~~s~wc 80 (1170)
...+...++.+++.|.|++-.-..+..+
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 3588899999999999998766555554
No 454
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.78 E-value=0.3 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.. .+++|+|..|.|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999863
No 455
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.74 E-value=0.95 Score=46.80 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...|.|.|+.|.||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999988654
No 456
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.61 E-value=0.85 Score=46.55 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=26.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceEEE
Q 046888 210 IVGIWGMGGIGKTTIVKALFNQISNEFEGKCFI 242 (1170)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 242 (1170)
.|+|-|.-|+||||.++.+++.+..+...+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887765445544
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.56 E-value=0.29 Score=49.66 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+.|.|.|..|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998753
No 458
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.41 E-value=0.6 Score=55.50 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=25.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998775444
No 459
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.38 E-value=0.8 Score=52.31 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCChHHHHHHHHHHHHhc------cCCceEEEE
Q 046888 194 IECIKSLLCTGLPDVRIVGIWGMGGIGKTTIVKALFNQISN------EFEGKCFIE 243 (1170)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 243 (1170)
+..|-.+|..+-..-.++.|+|.+|+|||||++.++-.... .-..++|+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 34455556444344579999999999999999987643221 123467775
No 460
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.32 E-value=0.3 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.+++|+|..|.|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.17 E-value=0.43 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 462
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.02 E-value=0.31 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999875
No 463
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.01 E-value=0.6 Score=47.72 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=26.7
Q ss_pred EEEEEE-ecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 209 RIVGIW-GMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 209 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
++|+|+ +-||+||||+|..++..+..+-..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 678887 68999999999999988776544445544
No 464
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.95 E-value=1 Score=50.28 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCCCeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 204 GLPDVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 204 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
.-....+++|+|.+|+|||||.+.+...+..
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3345689999999999999999999876543
No 465
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.83 E-value=0.7 Score=52.96 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=22.2
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
+.++|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 45789999999999999999887554
No 466
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.82 E-value=0.41 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998863
No 467
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.66 E-value=0.42 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=23.1
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHh
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.61 E-value=0.44 Score=50.40 Aligned_cols=26 Identities=35% Similarity=0.366 Sum_probs=23.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHh
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQIS 233 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1170)
...|+|.|..|+||||+|+.+++++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999988764
No 469
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.49 E-value=0.48 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
+.|+|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999876
No 470
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.44 E-value=1.4 Score=59.10 Aligned_cols=56 Identities=30% Similarity=0.357 Sum_probs=39.3
Q ss_pred ccchhHHHHHHHHhh-cCCCCeEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 188 VGLSSRIECIKSLLC-TGLPDVRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 188 vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.+...-..+|..+|. .+-..-.+|.|.|.+|+||||||..++.....+-..+.|+.
T Consensus 711 ~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 711 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 344444556666664 33344578999999999999999999987765434566664
No 471
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.38 E-value=0.35 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
-.+++|+|..|.|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997643
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.20 E-value=0.41 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
-.+++|+|..|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 473
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.17 E-value=2 Score=60.41 Aligned_cols=138 Identities=11% Similarity=0.094 Sum_probs=69.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCCceEEEEechhhhhcCcCHHHHHHHHHHHHhcCcccCCCCChhHHHHHHhcC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIENVREEIENGVGLVHLHKQVVSLLLGERLETGGPNIPAYALERLRR 288 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~l~~~L~~ 288 (1170)
+-|.++|++|.|||++|+.+.... ..+. ...+. .+...+...+++.+-..+.......+. ... -.-.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~-~~~~-~~~in-----fsa~ts~~~~~~~i~~~~~~~~~~~g~-~~~----P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS-SLYD-VVGIN-----FSKDTTTEHILSALHRHTNYVTTSKGL-TLL----PKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-SSCE-EEEEE-----CCTTCCHHHHHHHHHHHBCCEEETTTE-EEE----EBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC-CCCc-eEEEE-----eecCCCHHHHHHHHHHHhhhccccCCc-ccc----CCCCC
Confidence 568899999999999998776543 1222 22332 333444455554443322211100000 000 00146
Q ss_pred CCeEEEEeCCCCh--------HHHHHHHcccCCC-----CC-------CcEEEEEeCChh------HHHHhCCCCcceEe
Q 046888 289 TKVFMVLDDVSEF--------EQLKYLVGWLDGF-----CP-------GSRIVVTTRDKQ------VLRKQGVKDEHVYE 342 (1170)
Q Consensus 289 kk~LlVLDdv~~~--------~~~~~l~~~~~~~-----~~-------gsrIIiTTR~~~------v~~~~~~~~~~~~~ 342 (1170)
++.++.+||++-. ..++.+...+... .. +..+|.++-... +-... .....++.
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl-lRrf~vi~ 1414 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF-TRHAAILY 1414 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH-HTTEEEEE
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh-hheeeEEE
Confidence 7888999996431 2233333222111 11 123444553321 11111 01226789
Q ss_pred ecCCCHhHHHHHHHHHH
Q 046888 343 VERLNEDEGLELFYKYA 359 (1170)
Q Consensus 343 l~~L~~~ea~~Lf~~~a 359 (1170)
++..+.++-.++|....
T Consensus 1415 i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCCTTTHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999988765
No 474
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.17 E-value=0.36 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.+++|+|..|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.01 E-value=0.63 Score=50.97 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHH
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
+.-.+++|+|..|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445789999999999999999998765
No 476
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.93 E-value=0.41 Score=60.24 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=40.5
Q ss_pred CCccccchhHHHHHHHHhhcC-----------CCCeEEEEEEecCCChHHHHHHHHHHHHhccC
Q 046888 184 SKGLVGLSSRIECIKSLLCTG-----------LPDVRIVGIWGMGGIGKTTIVKALFNQISNEF 236 (1170)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 236 (1170)
-..++|.+...++|.+.+... ....+.+.++|.+|.||||||++++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356889998888888776421 12345689999999999999999999875443
No 477
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.93 E-value=0.37 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.-.+++|+|..|.|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998753
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.91 E-value=0.43 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
-.+++|+|..|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 479
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.81 E-value=0.9 Score=47.89 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=27.0
Q ss_pred CeEEEEEEe-cCCChHHHHHHHHHHHHhcc-CCceEEE
Q 046888 207 DVRIVGIWG-MGGIGKTTIVKALFNQISNE-FEGKCFI 242 (1170)
Q Consensus 207 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 242 (1170)
..++|+|++ -||+||||+|..++..+..+ -..++.+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 457888875 68999999999999988765 3334444
No 480
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.78 E-value=0.76 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
....|+|+|.+|+|||||...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999876
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.78 E-value=0.38 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.+++|+|..|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.75 E-value=0.38 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
-.+++|+|..|.|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999998753
No 483
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.73 E-value=0.41 Score=50.77 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.-.+++|+|..|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.61 E-value=1 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
...|.|-|+.|.||||+++.+++++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.60 E-value=0.39 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.-.+++|+|..|.|||||++.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999998753
No 486
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.60 E-value=0.39 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 487
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.57 E-value=0.34 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998763
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.48 E-value=0.4 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQI 232 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1170)
-.+++|+|..|.|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998643
No 489
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.47 E-value=0.53 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHHH
Q 046888 209 RIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 490
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=84.39 E-value=0.75 Score=48.65 Aligned_cols=33 Identities=24% Similarity=0.608 Sum_probs=25.4
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 211 VGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
|+|.|-||+||||+|..++..+..+-..++.+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998876543344443
No 491
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.39 E-value=1.2 Score=46.92 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=27.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhcc-CCceEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNE-FEGKCFI 242 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 242 (1170)
...|.|.|+.|.||||+++.+.+.+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999987654 3424433
No 492
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.36 E-value=1.2 Score=46.19 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHHHHHhc
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFNQISN 234 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1170)
....|.|.|+.|.||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998765
No 493
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.36 E-value=0.47 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQ 231 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1170)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999863
No 494
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.35 E-value=0.41 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHH
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
-.+++|+|..|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 495
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.33 E-value=1 Score=50.50 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHHHHh--ccCCceEEEE
Q 046888 206 PDVRIVGIWGMGGIGKTTIVKALFNQIS--NEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 243 (1170)
...+++.+.|.||+||||+|..++..+. ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4568999999999999999999998877 4444444443
No 496
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=84.32 E-value=0.87 Score=51.68 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCeEEEEEEe-cCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 206 PDVRIVGIWG-MGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 206 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
...++|+|+| -||+||||+|..++..++.+-..++.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578999886 9999999999999987766533455554
No 497
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.18 E-value=0.42 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHHH
Q 046888 207 DVRIVGIWGMGGIGKTTIVKALFN 230 (1170)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1170)
.-.+++|+|..|.|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 498
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.17 E-value=0.85 Score=46.87 Aligned_cols=29 Identities=21% Similarity=0.596 Sum_probs=25.4
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhccCC
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNEFE 237 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 237 (1170)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998876554
No 499
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=84.08 E-value=1 Score=49.90 Aligned_cols=36 Identities=33% Similarity=0.306 Sum_probs=28.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHhccCCceEEEE
Q 046888 208 VRIVGIWGMGGIGKTTIVKALFNQISNEFEGKCFIE 243 (1170)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 243 (1170)
.+++...|-||+||||+|..++..++.+-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 567788899999999999999998876644444443
No 500
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.95 E-value=1.3 Score=45.66 Aligned_cols=27 Identities=26% Similarity=0.403 Sum_probs=24.0
Q ss_pred EEEEEEecCCChHHHHHHHHHHHHhcc
Q 046888 209 RIVGIWGMGGIGKTTIVKALFNQISNE 235 (1170)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1170)
..|.|.|..|.||||+++.+.+.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
Done!