Query 046889
Match_columns 333
No_of_seqs 235 out of 2405
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.6E-37 9.9E-42 304.6 25.8 299 18-325 9-333 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 5.5E-26 1.2E-30 202.6 16.3 165 162-326 1-174 (287)
3 PLN03210 Resistant to P. syrin 99.8 1.6E-19 3.6E-24 187.7 19.0 166 155-326 182-368 (1153)
4 COG1120 FepC ABC-type cobalami 99.3 3.4E-12 7.4E-17 109.3 5.5 161 160-322 12-240 (258)
5 COG1126 GlnQ ABC-type polar am 99.3 8.9E-12 1.9E-16 102.3 6.1 148 156-308 8-211 (240)
6 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 9.7E-12 2.1E-16 106.0 5.2 139 164-304 18-210 (254)
7 PRK00411 cdc6 cell division co 99.2 1.7E-09 3.7E-14 100.8 19.1 166 157-322 30-220 (394)
8 PF05729 NACHT: NACHT domain 99.2 4.7E-10 1E-14 91.3 12.7 136 179-321 1-162 (166)
9 TIGR02928 orc1/cdc6 family rep 99.2 2.1E-09 4.5E-14 99.2 18.2 166 157-322 15-212 (365)
10 COG2884 FtsE Predicted ATPase 99.2 1.4E-10 3.1E-15 93.2 8.3 139 163-306 15-210 (223)
11 COG1116 TauB ABC-type nitrate/ 99.1 5.1E-11 1.1E-15 100.5 5.2 147 160-308 13-206 (248)
12 COG0488 Uup ATPase components 99.1 5.7E-10 1.2E-14 106.0 12.7 148 159-308 331-511 (530)
13 COG2256 MGS1 ATPase related to 99.1 5.1E-10 1.1E-14 99.9 11.3 145 153-321 20-175 (436)
14 COG0488 Uup ATPase components 99.1 1.4E-10 3.1E-15 110.1 7.2 146 160-308 13-225 (530)
15 TIGR03015 pepcterm_ATPase puta 99.1 7.1E-09 1.5E-13 91.5 17.3 155 163-323 29-206 (269)
16 COG1124 DppF ABC-type dipeptid 99.1 1.8E-10 4E-15 96.4 6.4 135 165-303 22-212 (252)
17 COG4555 NatA ABC-type Na+ tran 99.1 6.2E-10 1.3E-14 90.4 8.2 138 165-304 17-204 (245)
18 COG1136 SalX ABC-type antimicr 99.0 4.7E-10 1E-14 94.4 7.3 140 165-307 20-216 (226)
19 PF01637 Arch_ATPase: Archaeal 99.0 1.1E-09 2.5E-14 94.1 9.6 161 159-322 1-204 (234)
20 COG1117 PstB ABC-type phosphat 99.0 9.7E-10 2.1E-14 90.1 8.2 163 155-320 12-238 (253)
21 cd03222 ABC_RNaseL_inhibitor T 99.0 2.4E-09 5.3E-14 87.9 8.8 116 172-307 21-146 (177)
22 COG1127 Ttg2A ABC-type transpo 99.0 6E-10 1.3E-14 93.1 4.7 141 158-303 16-216 (263)
23 cd03226 ABC_cobalt_CbiO_domain 99.0 1.2E-09 2.5E-14 92.5 6.3 141 165-307 15-200 (205)
24 COG1131 CcmA ABC-type multidru 99.0 9E-10 1.9E-14 98.0 5.6 145 157-303 11-207 (293)
25 TIGR01188 drrA daunorubicin re 98.9 9.8E-10 2.1E-14 98.5 5.8 137 165-303 8-194 (302)
26 PRK13537 nodulation ABC transp 98.9 7.7E-10 1.7E-14 99.2 5.1 143 160-304 17-209 (306)
27 PRK06893 DNA replication initi 98.9 1.2E-08 2.7E-13 87.6 12.2 121 178-325 39-177 (229)
28 cd03238 ABC_UvrA The excision 98.9 2.2E-09 4.8E-14 88.0 7.0 131 166-307 11-162 (176)
29 PRK13536 nodulation factor exp 98.9 8.2E-10 1.8E-14 100.3 4.7 144 159-304 50-243 (340)
30 KOG2028 ATPase related to the 98.9 7.8E-09 1.7E-13 91.1 10.4 148 155-322 136-294 (554)
31 COG0396 sufC Cysteine desulfur 98.9 4.2E-09 9.1E-14 87.5 8.3 139 163-303 17-214 (251)
32 cd03265 ABC_DrrA DrrA is the A 98.9 1.2E-09 2.7E-14 93.4 5.4 142 164-307 14-206 (220)
33 cd03235 ABC_Metallic_Cations A 98.9 1.2E-09 2.6E-14 93.0 5.3 141 165-307 14-206 (213)
34 cd03259 ABC_Carb_Solutes_like 98.9 1.6E-09 3.4E-14 92.3 5.8 142 164-307 14-205 (213)
35 cd03266 ABC_NatA_sodium_export 98.9 2.8E-09 6E-14 91.1 7.1 141 165-307 20-210 (218)
36 cd03225 ABC_cobalt_CbiO_domain 98.9 2.1E-09 4.6E-14 91.3 6.1 140 165-306 16-207 (211)
37 cd03214 ABC_Iron-Siderophores_ 98.9 2.2E-09 4.7E-14 88.9 5.8 137 165-307 14-172 (180)
38 cd03269 ABC_putative_ATPase Th 98.9 1E-09 2.2E-14 93.2 3.9 141 165-307 15-202 (210)
39 COG3842 PotA ABC-type spermidi 98.9 7.3E-10 1.6E-14 99.3 2.8 148 157-306 12-210 (352)
40 PRK11247 ssuB aliphatic sulfon 98.9 4.6E-09 9.9E-14 91.9 7.8 141 161-303 23-204 (257)
41 PRK13543 cytochrome c biogenes 98.9 3.8E-09 8.2E-14 90.0 7.1 139 164-306 25-210 (214)
42 TIGR00960 3a0501s02 Type II (G 98.9 8.8E-09 1.9E-13 87.9 9.3 141 165-307 18-212 (216)
43 PF13401 AAA_22: AAA domain; P 98.9 9E-09 2E-13 80.4 8.7 114 179-292 5-125 (131)
44 cd03267 ABC_NatA_like Similar 98.9 2.6E-09 5.6E-14 92.4 6.0 142 163-307 34-228 (236)
45 cd03301 ABC_MalK_N The N-termi 98.9 2.6E-09 5.7E-14 90.9 5.9 141 164-306 14-204 (213)
46 cd03218 ABC_YhbG The ABC trans 98.9 2.7E-09 5.8E-14 92.1 5.9 140 165-306 15-206 (232)
47 COG1118 CysA ABC-type sulfate/ 98.9 3.9E-09 8.6E-14 91.2 6.7 145 161-307 13-212 (345)
48 PRK11248 tauB taurine transpor 98.9 3.8E-09 8.2E-14 92.4 6.7 140 165-306 16-202 (255)
49 cd03237 ABC_RNaseL_inhibitor_d 98.9 1.3E-08 2.8E-13 88.5 9.9 128 180-307 27-190 (246)
50 TIGR03740 galliderm_ABC gallid 98.9 2.8E-09 6.1E-14 91.4 5.8 140 165-306 15-197 (223)
51 COG4152 ABC-type uncharacteriz 98.9 2.9E-09 6.3E-14 89.0 5.5 143 157-303 9-200 (300)
52 cd03293 ABC_NrtD_SsuB_transpor 98.9 2.7E-09 5.8E-14 91.3 5.4 141 165-307 19-206 (220)
53 TIGR01288 nodI ATP-binding ABC 98.9 2.8E-09 6E-14 95.7 5.6 140 163-304 17-206 (303)
54 COG4608 AppF ABC-type oligopep 98.9 1.9E-09 4E-14 92.2 4.2 135 164-303 27-180 (268)
55 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 2.2E-09 4.9E-14 91.7 4.8 140 165-307 19-214 (218)
56 PRK13342 recombination factor 98.9 2.2E-08 4.8E-13 93.7 11.6 145 153-322 8-164 (413)
57 cd03294 ABC_Pro_Gly_Bertaine T 98.9 3.2E-09 6.9E-14 93.7 5.7 140 165-306 39-234 (269)
58 cd03261 ABC_Org_Solvent_Resist 98.9 1.9E-09 4.2E-14 93.2 4.1 140 165-306 15-210 (235)
59 TIGR02673 FtsE cell division A 98.9 6.3E-09 1.4E-13 88.6 7.1 142 164-307 16-211 (214)
60 cd03230 ABC_DR_subfamily_A Thi 98.9 2.7E-09 5.8E-14 87.8 4.7 129 165-307 15-169 (173)
61 PRK11264 putative amino-acid A 98.9 4.6E-09 1E-13 91.7 6.4 141 164-306 17-217 (250)
62 cd03216 ABC_Carb_Monos_I This 98.8 7.8E-10 1.7E-14 90.0 1.2 134 165-307 15-156 (163)
63 PRK13538 cytochrome c biogenes 98.8 4.9E-09 1.1E-13 88.6 5.9 140 165-306 16-202 (204)
64 PRK10636 putative ABC transpor 98.8 2E-08 4.3E-13 99.0 10.7 142 160-306 322-500 (638)
65 cd03268 ABC_BcrA_bacitracin_re 98.8 4E-09 8.6E-14 89.5 5.0 140 165-306 15-199 (208)
66 cd03258 ABC_MetN_methionine_tr 98.8 4.8E-09 1E-13 90.6 5.5 140 165-306 20-214 (233)
67 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 4.3E-09 9.4E-14 90.2 5.1 141 161-306 33-215 (224)
68 cd03224 ABC_TM1139_LivF_branch 98.8 3.6E-09 7.8E-14 90.6 4.6 141 165-307 15-206 (222)
69 cd03223 ABCD_peroxisomal_ALDP 98.8 2.3E-08 5.1E-13 81.5 9.2 136 165-306 16-160 (166)
70 TIGR02324 CP_lyasePhnL phospho 98.8 9.9E-09 2.1E-13 88.1 7.3 141 165-307 23-223 (224)
71 cd03246 ABCC_Protease_Secretio 98.8 1.8E-08 4E-13 82.8 8.4 135 165-306 17-168 (173)
72 cd03292 ABC_FtsE_transporter F 98.8 2.2E-08 4.8E-13 85.2 9.2 141 165-307 16-210 (214)
73 PRK09544 znuC high-affinity zi 98.8 4.8E-09 1E-13 91.5 5.1 141 165-307 19-195 (251)
74 cd03262 ABC_HisP_GlnQ_permease 98.8 9.4E-09 2E-13 87.5 6.7 141 165-307 15-209 (213)
75 PRK10636 putative ABC transpor 98.8 7.4E-09 1.6E-13 102.0 6.9 146 160-307 11-220 (638)
76 cd03296 ABC_CysA_sulfate_impor 98.8 5.6E-09 1.2E-13 90.5 5.3 140 165-306 17-210 (239)
77 PRK10908 cell division protein 98.8 5.7E-09 1.2E-13 89.4 5.3 141 165-307 17-211 (222)
78 TIGR01166 cbiO cobalt transpor 98.8 3.5E-09 7.6E-14 88.5 3.9 129 165-295 7-189 (190)
79 PRK13638 cbiO cobalt transport 98.8 8.8E-09 1.9E-13 91.0 6.6 141 164-306 15-209 (271)
80 PRK13647 cbiO cobalt transport 98.8 6.4E-09 1.4E-13 92.0 5.6 137 165-303 20-208 (274)
81 cd00009 AAA The AAA+ (ATPases 98.8 8.4E-08 1.8E-12 75.8 11.6 121 160-294 1-131 (151)
82 cd03229 ABC_Class3 This class 98.8 2.4E-09 5.2E-14 88.5 2.7 134 165-307 15-175 (178)
83 PRK15439 autoinducer 2 ABC tra 98.8 4.9E-09 1.1E-13 100.9 5.1 145 160-306 21-213 (510)
84 cd03263 ABC_subfamily_A The AB 98.8 1.2E-08 2.5E-13 87.4 6.8 140 164-306 16-205 (220)
85 cd03219 ABC_Mj1267_LivG_branch 98.8 9.3E-09 2E-13 89.0 6.2 140 165-306 15-216 (236)
86 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 2.3E-08 4.9E-13 79.6 7.8 119 169-306 19-140 (144)
87 cd03215 ABC_Carb_Monos_II This 98.8 7.2E-09 1.6E-13 85.9 5.1 136 165-307 15-178 (182)
88 cd03228 ABCC_MRP_Like The MRP 98.8 1.3E-08 2.7E-13 83.6 6.5 127 165-306 17-167 (171)
89 PRK10938 putative molybdenum t 98.8 1.7E-08 3.7E-13 96.8 8.4 144 161-306 14-208 (490)
90 PRK10619 histidine/lysine/argi 98.8 2.8E-08 6.1E-13 87.1 9.0 140 165-306 20-225 (257)
91 TIGR03258 PhnT 2-aminoethylpho 98.8 4.4E-09 9.6E-14 96.2 4.0 140 165-306 20-212 (362)
92 TIGR02314 ABC_MetN D-methionin 98.8 9.9E-09 2.2E-13 93.2 6.2 140 165-306 20-214 (343)
93 COG4133 CcmA ABC-type transpor 98.8 3.9E-09 8.5E-14 84.9 3.1 129 164-296 16-193 (209)
94 PRK15064 ABC transporter ATP-b 98.8 9.5E-09 2.1E-13 99.4 6.5 140 164-305 15-224 (530)
95 PRK09493 glnQ glutamine ABC tr 98.8 9.5E-09 2.1E-13 89.1 5.8 140 165-306 16-209 (240)
96 PRK11124 artP arginine transpo 98.8 1E-08 2.3E-13 89.0 6.1 141 164-306 16-214 (242)
97 PRK10895 lipopolysaccharide AB 98.8 7.4E-09 1.6E-13 89.9 5.1 139 165-306 18-210 (241)
98 PF13173 AAA_14: AAA domain 98.8 3E-08 6.4E-13 77.3 8.0 116 179-314 3-127 (128)
99 cd01128 rho_factor Transcripti 98.8 1.3E-08 2.8E-13 88.1 6.5 91 175-268 15-114 (249)
100 PRK15056 manganese/iron transp 98.8 5.2E-08 1.1E-12 86.1 10.5 137 165-303 22-212 (272)
101 cd03217 ABC_FeS_Assembly ABC-t 98.8 9.2E-09 2E-13 86.6 5.3 137 165-306 15-178 (200)
102 PRK11000 maltose/maltodextrin 98.8 1.1E-08 2.5E-13 94.0 6.3 140 165-306 18-207 (369)
103 PRK13539 cytochrome c biogenes 98.8 7.5E-09 1.6E-13 87.7 4.7 141 165-309 17-201 (207)
104 TIGR01184 ntrCD nitrate transp 98.8 2.3E-08 4.9E-13 86.2 7.8 132 173-306 8-188 (230)
105 TIGR03522 GldA_ABC_ATP gliding 98.8 5.9E-09 1.3E-13 93.5 4.2 136 165-303 17-202 (301)
106 PRK09536 btuD corrinoid ABC tr 98.8 1E-08 2.2E-13 94.9 5.8 139 164-304 17-210 (402)
107 PRK13651 cobalt transporter AT 98.8 1.7E-08 3.6E-13 90.6 6.9 140 165-306 22-238 (305)
108 cd03295 ABC_OpuCA_Osmoprotecti 98.8 9E-09 2E-13 89.4 5.1 140 165-306 16-209 (242)
109 PRK14250 phosphate ABC transpo 98.8 1.4E-08 3.1E-13 88.0 6.3 140 165-306 18-205 (241)
110 PRK09580 sufC cysteine desulfu 98.8 1.6E-08 3.5E-13 88.2 6.6 138 165-304 16-217 (248)
111 PRK11650 ugpC glycerol-3-phosp 98.8 7.3E-09 1.6E-13 94.7 4.6 138 165-304 19-206 (356)
112 PRK11432 fbpC ferric transport 98.7 7.4E-09 1.6E-13 94.4 4.5 140 165-306 21-210 (351)
113 COG4618 ArpD ABC-type protease 98.7 3.8E-08 8.1E-13 90.5 9.0 135 162-298 348-537 (580)
114 TIGR03608 L_ocin_972_ABC putat 98.7 1.4E-08 3E-13 86.0 5.8 136 165-303 13-203 (206)
115 TIGR01277 thiQ thiamine ABC tr 98.7 5.2E-08 1.1E-12 82.9 9.4 137 169-307 17-203 (213)
116 PRK11300 livG leucine/isoleuci 98.7 8.5E-09 1.8E-13 90.3 4.7 141 164-306 19-227 (255)
117 cd03213 ABCG_EPDR ABCG transpo 98.7 1.5E-08 3.3E-13 84.9 5.9 139 164-306 23-185 (194)
118 PRK13548 hmuV hemin importer A 98.7 2.3E-08 5E-13 87.7 7.3 141 164-306 16-214 (258)
119 COG4559 ABC-type hemin transpo 98.7 2.1E-08 4.6E-13 82.3 6.4 163 161-325 12-245 (259)
120 PRK10418 nikD nickel transport 98.7 3.5E-08 7.5E-13 86.4 8.3 140 165-306 18-214 (254)
121 PRK09984 phosphonate/organopho 98.7 2.3E-08 4.9E-13 87.9 7.2 140 163-304 17-224 (262)
122 PRK10762 D-ribose transporter 98.7 1.3E-08 2.8E-13 97.8 6.1 141 164-306 18-214 (501)
123 TIGR02315 ABC_phnC phosphonate 98.7 2.1E-08 4.6E-13 87.1 6.8 141 164-306 16-219 (243)
124 PRK11701 phnK phosphonate C-P 98.7 1.9E-08 4.2E-13 88.2 6.5 140 165-306 21-225 (258)
125 KOG0927 Predicted transporter 98.7 8.7E-08 1.9E-12 88.7 10.8 138 159-299 399-572 (614)
126 COG0410 LivF ABC-type branched 98.7 2.3E-08 5E-13 83.3 6.4 149 157-307 10-211 (237)
127 TIGR03410 urea_trans_UrtE urea 98.7 1.1E-08 2.3E-13 88.3 4.7 141 164-306 14-205 (230)
128 cd03231 ABC_CcmA_heme_exporter 98.7 5.4E-09 1.2E-13 88.1 2.8 138 165-306 15-198 (201)
129 COG1125 OpuBA ABC-type proline 98.7 1.7E-08 3.8E-13 85.0 5.7 143 159-303 10-206 (309)
130 cd03257 ABC_NikE_OppD_transpor 98.7 2E-08 4.3E-13 86.4 6.4 141 165-307 20-220 (228)
131 TIGR01186 proV glycine betaine 98.7 1.1E-08 2.3E-13 93.6 4.9 138 165-304 8-201 (363)
132 cd03247 ABCC_cytochrome_bd The 98.7 6.3E-08 1.4E-12 80.0 9.1 130 165-307 17-170 (178)
133 TIGR03771 anch_rpt_ABC anchore 98.7 7E-08 1.5E-12 82.7 9.7 131 174-306 4-186 (223)
134 PRK04841 transcriptional regul 98.7 3.5E-07 7.7E-12 94.3 16.5 159 156-323 13-200 (903)
135 cd03256 ABC_PhnC_transporter A 98.7 1.8E-08 4E-13 87.4 6.0 140 165-306 16-218 (241)
136 PRK13641 cbiO cobalt transport 98.7 1.5E-08 3.3E-13 90.2 5.6 140 165-306 22-218 (287)
137 cd03297 ABC_ModC_molybdenum_tr 98.7 5.1E-08 1.1E-12 83.0 8.6 128 179-306 24-205 (214)
138 TIGR01978 sufC FeS assembly AT 98.7 2.1E-08 4.6E-13 87.1 6.3 140 165-306 15-218 (243)
139 COG3839 MalK ABC-type sugar tr 98.7 1.5E-08 3.2E-13 90.5 5.3 137 165-303 18-204 (338)
140 TIGR03411 urea_trans_UrtD urea 98.7 1.9E-08 4.2E-13 87.3 5.9 139 165-306 17-215 (242)
141 PRK11144 modC molybdate transp 98.7 7.4E-08 1.6E-12 88.2 10.0 133 172-306 20-202 (352)
142 TIGR00968 3a0106s01 sulfate AB 98.7 1.3E-08 2.8E-13 88.1 4.8 140 165-306 15-204 (237)
143 COG1135 AbcC ABC-type metal io 98.7 1.2E-08 2.7E-13 88.3 4.5 137 165-303 21-212 (339)
144 PRK11153 metN DL-methionine tr 98.7 6.1E-08 1.3E-12 88.4 9.4 140 165-306 20-214 (343)
145 KOG0062 ATPase component of AB 98.7 5.5E-09 1.2E-13 95.9 2.5 146 159-308 89-270 (582)
146 cd03236 ABC_RNaseL_inhibitor_d 98.7 6.9E-08 1.5E-12 84.3 9.2 140 165-307 16-213 (255)
147 PRK11147 ABC transporter ATPas 98.7 2.9E-08 6.2E-13 98.0 7.6 141 161-306 14-226 (635)
148 TIGR00635 ruvB Holliday juncti 98.7 1.7E-07 3.6E-12 84.3 12.0 156 157-323 4-173 (305)
149 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 1.9E-08 4.1E-13 87.1 5.6 139 165-306 16-205 (236)
150 PRK13643 cbiO cobalt transport 98.7 9.8E-08 2.1E-12 85.0 10.3 140 165-306 21-217 (288)
151 PRK10247 putative ABC transpor 98.7 3.2E-08 7E-13 84.9 6.9 140 163-306 20-210 (225)
152 cd03298 ABC_ThiQ_thiamine_tran 98.7 4.6E-08 1E-12 83.1 7.8 138 168-307 16-203 (211)
153 PRK13646 cbiO cobalt transport 98.7 2.2E-08 4.8E-13 89.1 6.1 140 165-306 22-219 (286)
154 cd03300 ABC_PotA_N PotA is an 98.7 2.1E-08 4.6E-13 86.5 5.8 140 164-306 14-204 (232)
155 TIGR03005 ectoine_ehuA ectoine 98.7 1.5E-08 3.2E-13 88.6 4.9 140 165-306 15-220 (252)
156 PTZ00202 tuzin; Provisional 98.7 6.6E-07 1.4E-11 81.8 15.4 164 149-322 254-434 (550)
157 TIGR02211 LolD_lipo_ex lipopro 98.7 6.4E-08 1.4E-12 82.8 8.6 140 165-307 20-215 (221)
158 PRK10584 putative ABC transpor 98.7 2.3E-08 5.1E-13 86.0 5.8 140 165-307 25-220 (228)
159 TIGR02142 modC_ABC molybdenum 98.7 7.4E-08 1.6E-12 88.3 9.4 133 172-306 19-205 (354)
160 TIGR03265 PhnT2 putative 2-ami 98.7 6.4E-08 1.4E-12 88.4 8.9 139 166-306 20-208 (353)
161 PRK13639 cbiO cobalt transport 98.7 7.2E-08 1.6E-12 85.3 8.9 140 165-306 17-210 (275)
162 PRK13634 cbiO cobalt transport 98.7 7.5E-08 1.6E-12 85.9 9.1 140 165-306 22-219 (290)
163 cd03260 ABC_PstB_phosphate_tra 98.7 5.4E-08 1.2E-12 83.7 7.9 140 165-307 15-214 (227)
164 PRK11231 fecE iron-dicitrate t 98.7 1.3E-08 2.9E-13 89.0 4.2 140 165-306 17-211 (255)
165 PRK13540 cytochrome c biogenes 98.7 1.6E-08 3.6E-13 85.1 4.5 133 165-301 16-195 (200)
166 PRK11614 livF leucine/isoleuci 98.7 1.4E-08 3E-13 87.9 4.2 141 164-306 19-210 (237)
167 PRK11629 lolD lipoprotein tran 98.7 8E-08 1.7E-12 82.9 8.9 139 165-306 24-218 (233)
168 COG3840 ThiQ ABC-type thiamine 98.7 1.8E-07 3.8E-12 75.1 9.9 127 175-306 24-203 (231)
169 PRK13549 xylose transporter AT 98.7 1.5E-08 3.4E-13 97.4 4.8 144 161-306 16-216 (506)
170 TIGR03873 F420-0_ABC_ATP propo 98.7 2.5E-08 5.5E-13 87.3 5.7 141 164-306 15-210 (256)
171 PRK15064 ABC transporter ATP-b 98.7 4E-08 8.6E-13 95.1 7.5 142 160-306 329-508 (530)
172 PRK10575 iron-hydroxamate tran 98.7 6.9E-09 1.5E-13 91.4 2.0 140 164-305 25-220 (265)
173 PRK09452 potA putrescine/sperm 98.7 1.5E-08 3.4E-13 93.0 4.4 140 165-306 29-218 (375)
174 PRK14269 phosphate ABC transpo 98.7 5.6E-08 1.2E-12 84.6 7.6 139 165-306 17-214 (246)
175 PRK13409 putative ATPase RIL; 98.7 1.2E-07 2.6E-12 92.4 10.6 138 166-306 355-527 (590)
176 TIGR02770 nickel_nikD nickel i 98.7 5.9E-08 1.3E-12 83.6 7.7 132 173-306 9-199 (230)
177 TIGR00972 3a0107s01c2 phosphat 98.7 7.4E-08 1.6E-12 83.9 8.3 140 164-306 15-216 (247)
178 PRK14247 phosphate ABC transpo 98.7 8.5E-08 1.9E-12 83.7 8.7 140 164-306 17-218 (250)
179 PRK15112 antimicrobial peptide 98.7 3E-08 6.5E-13 87.4 5.8 140 165-306 28-223 (267)
180 PRK10070 glycine betaine trans 98.7 9.1E-08 2E-12 88.5 9.2 136 169-306 47-238 (400)
181 PRK13637 cbiO cobalt transport 98.7 9E-08 1.9E-12 85.2 8.9 138 165-304 22-216 (287)
182 PF13191 AAA_16: AAA ATPase do 98.7 8.7E-08 1.9E-12 79.4 8.3 48 158-205 1-51 (185)
183 TIGR03269 met_CoM_red_A2 methy 98.7 4.2E-08 9E-13 94.8 7.2 63 244-306 173-242 (520)
184 COG4107 PhnK ABC-type phosphon 98.7 6.7E-08 1.4E-12 76.9 7.0 149 156-306 12-225 (258)
185 PRK13546 teichoic acids export 98.7 1.6E-07 3.5E-12 82.5 10.2 137 168-306 42-216 (264)
186 PRK13652 cbiO cobalt transport 98.7 1.3E-07 2.8E-12 83.8 9.7 138 165-304 19-209 (277)
187 cd03264 ABC_drug_resistance_li 98.7 1.2E-07 2.6E-12 80.6 9.1 139 165-307 15-203 (211)
188 PRK10771 thiQ thiamine transpo 98.7 1.5E-07 3.2E-12 81.2 9.7 136 169-306 18-203 (232)
189 COG1474 CDC6 Cdc6-related prot 98.7 2E-06 4.4E-11 78.6 17.3 167 157-323 17-204 (366)
190 PRK09700 D-allose transporter 98.7 1.4E-08 3E-13 97.9 3.3 142 161-306 16-218 (510)
191 PRK10253 iron-enterobactin tra 98.6 4.1E-08 8.8E-13 86.5 5.9 141 164-306 21-217 (265)
192 PRK11819 putative ABC transpor 98.6 4.7E-08 1E-12 95.1 6.9 139 163-306 20-233 (556)
193 COG1122 CbiO ABC-type cobalt t 98.6 2.7E-08 5.9E-13 85.2 4.6 143 164-308 18-214 (235)
194 PRK10851 sulfate/thiosulfate t 98.6 2.1E-08 4.6E-13 91.6 4.2 140 165-306 17-210 (353)
195 PRK10982 galactose/methyl gala 98.6 3E-08 6.6E-13 95.1 5.5 139 164-304 12-205 (491)
196 cd00267 ABC_ATPase ABC (ATP-bi 98.6 6.9E-08 1.5E-12 78.0 6.7 127 173-307 22-154 (157)
197 PRK11607 potG putrescine trans 98.6 1E-07 2.3E-12 87.7 8.7 140 165-306 34-223 (377)
198 PRK10744 pstB phosphate transp 98.6 1.2E-07 2.7E-12 83.2 8.8 140 164-306 27-228 (260)
199 PRK11308 dppF dipeptide transp 98.6 7E-08 1.5E-12 87.3 7.3 137 165-303 30-225 (327)
200 TIGR03415 ABC_choXWV_ATP choli 98.6 2.3E-08 5E-13 91.8 4.2 132 173-306 47-238 (382)
201 CHL00131 ycf16 sulfate ABC tra 98.6 6.8E-08 1.5E-12 84.4 7.0 140 165-306 22-225 (252)
202 PRK13545 tagH teichoic acids e 98.6 2.5E-07 5.5E-12 87.3 11.2 140 165-306 39-216 (549)
203 PRK11831 putative ABC transpor 98.6 1.1E-07 2.3E-12 84.0 8.3 139 165-305 22-216 (269)
204 cd03232 ABC_PDR_domain2 The pl 98.6 1E-07 2.3E-12 79.7 7.7 139 165-307 22-183 (192)
205 PRK03695 vitamin B12-transport 98.6 5.3E-08 1.1E-12 84.9 6.1 139 166-306 12-206 (248)
206 COG2274 SunT ABC-type bacterio 98.6 1.3E-06 2.9E-11 86.1 16.4 134 164-299 487-674 (709)
207 cd03250 ABCC_MRP_domain1 Domai 98.6 1.2E-07 2.6E-12 80.1 7.9 138 165-306 20-200 (204)
208 PRK13649 cbiO cobalt transport 98.6 1.5E-07 3.2E-12 83.6 8.9 139 165-305 22-217 (280)
209 TIGR02633 xylG D-xylose ABC tr 98.6 5.5E-08 1.2E-12 93.6 6.5 141 164-306 15-214 (500)
210 PRK13640 cbiO cobalt transport 98.6 2E-07 4.4E-12 82.8 9.7 138 165-305 22-215 (282)
211 TIGR02323 CP_lyasePhnK phospho 98.6 6E-08 1.3E-12 84.8 6.2 140 165-306 18-222 (253)
212 PRK13650 cbiO cobalt transport 98.6 1.4E-07 3E-12 83.7 8.6 137 165-304 22-211 (279)
213 PRK10762 D-ribose transporter 98.6 5.9E-08 1.3E-12 93.3 6.7 139 166-306 268-468 (501)
214 TIGR01189 ccmA heme ABC export 98.6 4.1E-08 8.8E-13 82.6 4.9 128 165-294 15-188 (198)
215 PRK11288 araG L-arabinose tran 98.6 5.2E-08 1.1E-12 93.7 6.3 139 164-304 18-211 (501)
216 PRK13636 cbiO cobalt transport 98.6 4E-08 8.7E-13 87.3 5.1 139 164-304 20-213 (283)
217 PRK15439 autoinducer 2 ABC tra 98.6 6.8E-08 1.5E-12 93.0 7.0 138 166-305 279-475 (510)
218 COG1119 ModF ABC-type molybden 98.6 8.4E-08 1.8E-12 80.7 6.5 146 159-306 40-246 (257)
219 PRK13631 cbiO cobalt transport 98.6 1.5E-07 3.2E-12 84.9 8.7 141 164-306 40-249 (320)
220 PRK00080 ruvB Holliday junctio 98.6 6.9E-07 1.5E-11 81.2 13.0 161 153-324 21-195 (328)
221 COG1123 ATPase components of v 98.6 7.4E-08 1.6E-12 90.6 6.6 154 164-319 23-244 (539)
222 cd03299 ABC_ModC_like Archeal 98.6 3.1E-07 6.8E-12 79.3 10.2 139 166-306 15-203 (235)
223 COG1134 TagH ABC-type polysacc 98.6 8.2E-08 1.8E-12 80.8 6.2 156 165-322 42-242 (249)
224 PRK15093 antimicrobial peptide 98.6 1.1E-07 2.5E-12 86.2 7.7 137 165-303 22-229 (330)
225 PRK14246 phosphate ABC transpo 98.6 9.6E-08 2.1E-12 83.7 7.0 144 160-306 20-225 (257)
226 PRK13341 recombination factor 98.6 2.7E-07 5.9E-12 91.2 10.9 144 153-322 24-181 (725)
227 PRK13644 cbiO cobalt transport 98.6 4E-08 8.8E-13 86.9 4.6 136 165-303 17-205 (274)
228 PRK14267 phosphate ABC transpo 98.6 1.5E-07 3.2E-12 82.4 8.1 140 164-306 18-221 (253)
229 PRK11147 ABC transporter ATPas 98.6 6.5E-08 1.4E-12 95.5 6.5 145 160-306 329-510 (635)
230 COG0444 DppD ABC-type dipeptid 98.6 1.2E-07 2.5E-12 83.2 7.2 138 164-303 19-224 (316)
231 PRK14242 phosphate transporter 98.6 2.2E-07 4.7E-12 81.3 9.0 140 164-306 20-221 (253)
232 COG4181 Predicted ABC-type tra 98.6 3E-07 6.5E-12 73.1 8.7 127 174-302 34-216 (228)
233 cd03245 ABCC_bacteriocin_expor 98.6 1.2E-07 2.6E-12 81.1 7.0 139 165-307 19-212 (220)
234 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.7E-07 1.4E-11 76.7 11.7 134 162-322 22-172 (226)
235 TIGR02769 nickel_nikE nickel i 98.6 9.4E-08 2E-12 84.2 6.5 140 165-306 26-224 (265)
236 PRK13633 cobalt transporter AT 98.6 6.3E-08 1.4E-12 86.0 5.4 137 165-304 25-215 (280)
237 PRK14273 phosphate ABC transpo 98.6 1.7E-07 3.8E-12 81.9 8.0 141 163-306 20-222 (254)
238 PRK13645 cbiO cobalt transport 98.6 2.9E-07 6.2E-12 82.1 9.5 140 165-306 26-224 (289)
239 PRK11022 dppD dipeptide transp 98.6 8.8E-08 1.9E-12 86.7 6.2 137 165-303 22-224 (326)
240 TIGR02633 xylG D-xylose ABC tr 98.6 1.6E-07 3.5E-12 90.3 8.4 142 163-306 273-476 (500)
241 PRK12402 replication factor C 98.6 1.2E-06 2.6E-11 79.9 13.7 168 153-322 11-197 (337)
242 PLN03211 ABC transporter G-25; 98.6 1.2E-07 2.5E-12 93.7 7.4 163 161-325 79-305 (659)
243 cd03234 ABCG_White The White s 98.6 1.3E-07 2.8E-12 81.3 6.9 141 164-306 21-217 (226)
244 TIGR02903 spore_lon_C ATP-depe 98.6 1.4E-06 3.1E-11 85.2 14.7 170 153-323 150-367 (615)
245 PRK14271 phosphate ABC transpo 98.6 8.5E-08 1.8E-12 84.9 5.6 144 160-306 31-235 (276)
246 COG0411 LivG ABC-type branched 98.6 1.2E-08 2.5E-13 85.7 0.1 148 158-307 12-224 (250)
247 COG1123 ATPase components of v 98.6 6.1E-08 1.3E-12 91.1 4.9 138 164-303 305-500 (539)
248 PRK13409 putative ATPase RIL; 98.6 2.3E-07 4.9E-12 90.5 9.0 146 157-306 80-284 (590)
249 COG2909 MalT ATP-dependent tra 98.6 2E-06 4.4E-11 83.8 15.3 165 151-322 13-207 (894)
250 PRK09700 D-allose transporter 98.6 1.5E-07 3.3E-12 90.7 7.8 140 165-306 278-482 (510)
251 PRK11288 araG L-arabinose tran 98.6 2.1E-07 4.6E-12 89.4 8.8 140 165-306 268-469 (501)
252 PRK14248 phosphate ABC transpo 98.6 1.6E-07 3.5E-12 82.9 7.3 143 161-306 32-236 (268)
253 PRK13632 cbiO cobalt transport 98.6 6.5E-08 1.4E-12 85.4 4.8 137 164-303 23-212 (271)
254 COG4598 HisP ABC-type histidin 98.6 2.9E-07 6.2E-12 73.7 7.9 145 157-306 13-225 (256)
255 PRK14235 phosphate transporter 98.6 9.9E-08 2.2E-12 84.1 5.9 139 165-306 34-235 (267)
256 cd03254 ABCC_Glucan_exporter_l 98.6 2.2E-07 4.8E-12 79.9 8.0 138 165-306 18-210 (229)
257 PRK14274 phosphate ABC transpo 98.6 2.2E-07 4.8E-12 81.5 8.1 139 165-306 27-227 (259)
258 PLN03073 ABC transporter F fam 98.6 1.4E-07 2.9E-12 93.8 7.5 140 164-306 523-697 (718)
259 PRK13648 cbiO cobalt transport 98.6 5.9E-07 1.3E-11 79.3 10.8 135 165-304 24-213 (269)
260 PRK14249 phosphate ABC transpo 98.6 1.7E-07 3.6E-12 81.9 7.2 139 165-306 19-219 (251)
261 PRK14275 phosphate ABC transpo 98.6 1.3E-07 2.8E-12 84.1 6.6 140 164-306 53-254 (286)
262 COG4619 ABC-type uncharacteriz 98.6 1.3E-07 2.9E-12 74.8 5.8 140 164-308 17-209 (223)
263 PRK14268 phosphate ABC transpo 98.6 1.1E-07 2.4E-12 83.4 6.0 140 164-306 26-226 (258)
264 PRK14244 phosphate ABC transpo 98.6 2.3E-07 5E-12 81.0 8.0 139 165-306 20-221 (251)
265 PLN03073 ABC transporter F fam 98.6 7.8E-08 1.7E-12 95.5 5.5 61 246-306 351-414 (718)
266 PRK09376 rho transcription ter 98.5 3.5E-07 7.6E-12 82.9 9.1 88 180-268 171-267 (416)
267 PRK00440 rfc replication facto 98.5 2.1E-06 4.6E-11 77.6 14.4 149 153-322 13-174 (319)
268 COG3638 ABC-type phosphate/pho 98.5 7.9E-08 1.7E-12 80.3 4.5 144 161-306 15-221 (258)
269 PRK10419 nikE nickel transport 98.5 1.4E-07 3E-12 83.2 6.4 140 165-306 27-225 (268)
270 PRK15134 microcin C ABC transp 98.5 1E-07 2.2E-12 92.3 6.1 141 164-306 300-499 (529)
271 PRK13549 xylose transporter AT 98.5 1.1E-07 2.4E-12 91.6 6.2 141 164-306 276-478 (506)
272 PRK14241 phosphate transporter 98.5 1.4E-07 3.1E-12 82.7 6.3 140 164-306 18-220 (258)
273 PRK15177 Vi polysaccharide exp 98.5 1.3E-07 2.8E-12 80.4 5.9 134 169-306 6-176 (213)
274 PRK15079 oligopeptide ABC tran 98.5 4.7E-07 1E-11 82.1 9.8 137 165-303 36-232 (331)
275 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 1.8E-07 4E-12 91.0 7.6 138 164-306 19-231 (552)
276 PRK13635 cbiO cobalt transport 98.5 3.9E-07 8.5E-12 80.8 9.0 136 165-303 22-210 (279)
277 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 1.5E-07 3.2E-12 91.6 6.8 143 160-307 332-514 (552)
278 PRK14259 phosphate ABC transpo 98.5 2E-07 4.4E-12 82.2 7.1 141 164-307 27-227 (269)
279 cd03290 ABCC_SUR1_N The SUR do 98.5 3.8E-07 8.3E-12 77.9 8.5 140 165-307 16-215 (218)
280 PTZ00112 origin recognition co 98.5 4.4E-06 9.6E-11 82.4 16.6 166 157-323 755-950 (1164)
281 PRK10982 galactose/methyl gala 98.5 2.7E-07 5.8E-12 88.6 8.3 140 165-306 263-464 (491)
282 PRK13541 cytochrome c biogenes 98.5 2.8E-07 6.1E-12 77.3 7.5 123 173-297 23-187 (195)
283 COG3845 ABC-type uncharacteriz 98.5 9.2E-08 2E-12 87.8 4.8 155 165-321 19-240 (501)
284 PRK14263 phosphate ABC transpo 98.5 1.6E-07 3.5E-12 82.5 6.2 145 159-306 17-221 (261)
285 PRK09473 oppD oligopeptide tra 98.5 7.4E-07 1.6E-11 80.8 10.7 139 164-304 30-233 (330)
286 cd03369 ABCC_NFT1 Domain 2 of 98.5 3.1E-07 6.7E-12 77.8 7.8 140 164-307 22-197 (207)
287 PRK15134 microcin C ABC transp 98.5 1.3E-07 2.8E-12 91.6 6.1 141 164-306 23-230 (529)
288 PRK14262 phosphate ABC transpo 98.5 2.6E-07 5.6E-12 80.6 7.4 140 164-306 17-218 (250)
289 cd03253 ABCC_ATM1_transporter 98.5 7.7E-07 1.7E-11 76.9 10.3 138 165-306 16-208 (236)
290 PRK14949 DNA polymerase III su 98.5 1.6E-06 3.4E-11 86.1 13.5 164 152-322 11-191 (944)
291 PRK14240 phosphate transporter 98.5 2.4E-07 5.1E-12 80.9 7.1 140 164-306 17-218 (250)
292 PRK14256 phosphate ABC transpo 98.5 2.1E-07 4.4E-12 81.4 6.7 137 165-304 19-218 (252)
293 COG4525 TauB ABC-type taurine 98.5 9.2E-07 2E-11 71.9 9.7 143 164-308 19-208 (259)
294 PRK14265 phosphate ABC transpo 98.5 1.9E-07 4.2E-12 82.5 6.5 144 161-307 31-234 (274)
295 PRK11819 putative ABC transpor 98.5 1.9E-07 4.2E-12 90.8 7.0 143 160-307 334-516 (556)
296 TIGR00767 rho transcription te 98.5 2.7E-07 5.9E-12 83.9 7.5 91 175-268 167-266 (415)
297 PRK14253 phosphate ABC transpo 98.5 2.5E-07 5.5E-12 80.6 7.0 140 164-306 17-217 (249)
298 KOG0066 eIF2-interacting prote 98.5 1.8E-07 3.9E-12 84.6 6.0 141 156-298 593-766 (807)
299 cd03252 ABCC_Hemolysin The ABC 98.5 3E-07 6.6E-12 79.5 7.3 138 165-306 17-209 (237)
300 TIGR03269 met_CoM_red_A2 methy 98.5 1.6E-07 3.4E-12 90.8 6.0 142 164-307 298-502 (520)
301 PRK13547 hmuV hemin importer A 98.5 6E-08 1.3E-12 85.6 2.9 141 164-306 15-228 (272)
302 cd03233 ABC_PDR_domain1 The pl 98.5 2.5E-07 5.5E-12 78.0 6.6 140 165-307 22-194 (202)
303 PRK14245 phosphate ABC transpo 98.5 4.5E-07 9.9E-12 79.1 8.3 139 165-306 18-218 (250)
304 cd03244 ABCC_MRP_domain2 Domai 98.5 3.6E-07 7.8E-12 78.2 7.5 140 164-307 18-211 (221)
305 PRK14243 phosphate transporter 98.5 6.1E-07 1.3E-11 78.9 9.0 144 161-307 21-224 (264)
306 PRK10261 glutathione transport 98.5 2E-07 4.4E-12 91.8 6.5 141 164-306 30-242 (623)
307 PRK14258 phosphate ABC transpo 98.5 3E-07 6.5E-12 80.8 7.0 142 164-307 21-225 (261)
308 PRK14238 phosphate transporter 98.5 4.6E-07 9.9E-12 80.1 8.2 140 164-306 38-239 (271)
309 PRK04195 replication factor C 98.5 1.1E-06 2.5E-11 83.8 11.4 151 152-322 9-173 (482)
310 PRK14237 phosphate transporter 98.5 2.4E-07 5.2E-12 81.6 6.3 140 164-306 34-235 (267)
311 PRK14270 phosphate ABC transpo 98.5 2.8E-07 6E-12 80.5 6.5 139 165-306 19-219 (251)
312 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 3.1E-07 6.8E-12 79.5 6.8 60 245-306 145-210 (238)
313 KOG0927 Predicted transporter 98.5 6.1E-07 1.3E-11 83.2 8.7 61 246-307 228-293 (614)
314 PLN03025 replication factor C 98.5 2.9E-06 6.3E-11 76.7 13.2 155 152-322 8-171 (319)
315 PRK10261 glutathione transport 98.5 2.3E-07 5E-12 91.4 6.5 138 165-304 339-535 (623)
316 PRK08084 DNA replication initi 98.5 2.2E-06 4.8E-11 74.0 11.8 134 163-323 30-181 (235)
317 PRK14236 phosphate transporter 98.5 2.7E-07 5.9E-12 81.5 6.3 143 161-306 36-240 (272)
318 PRK14239 phosphate transporter 98.5 6E-07 1.3E-11 78.4 8.5 61 245-306 154-220 (252)
319 cd03289 ABCC_CFTR2 The CFTR su 98.5 4.7E-07 1E-11 79.9 7.7 138 165-306 19-209 (275)
320 PRK08727 hypothetical protein; 98.5 2.3E-06 5E-11 73.8 11.8 140 157-323 19-176 (233)
321 cd03251 ABCC_MsbA MsbA is an e 98.5 6.9E-07 1.5E-11 77.1 8.5 138 165-306 17-209 (234)
322 TIGR02982 heterocyst_DevA ABC 98.5 2.8E-07 6E-12 78.8 5.9 139 165-306 20-214 (220)
323 PRK14272 phosphate ABC transpo 98.5 4.6E-07 1E-11 79.2 7.3 61 245-306 154-220 (252)
324 PRK14963 DNA polymerase III su 98.5 3.2E-07 6.9E-12 87.4 6.7 162 152-322 9-188 (504)
325 PRK14251 phosphate ABC transpo 98.5 4.1E-07 8.8E-12 79.5 6.9 140 164-306 18-219 (251)
326 PRK09087 hypothetical protein; 98.4 1.7E-06 3.6E-11 74.1 10.3 109 179-323 45-167 (226)
327 PRK14261 phosphate ABC transpo 98.4 5.8E-07 1.3E-11 78.6 7.6 61 245-306 155-221 (253)
328 COG4604 CeuD ABC-type enteroch 98.4 9.5E-08 2.1E-12 77.6 2.4 145 158-307 9-210 (252)
329 cd03248 ABCC_TAP TAP, the Tran 98.4 7.4E-07 1.6E-11 76.5 8.1 139 165-307 29-222 (226)
330 PRK13642 cbiO cobalt transport 98.4 9E-07 2E-11 78.4 8.8 135 165-303 22-210 (277)
331 TIGR01187 potA spermidine/putr 98.4 6.9E-07 1.5E-11 80.9 8.0 124 183-306 1-174 (325)
332 PRK10938 putative molybdenum t 98.4 1.1E-07 2.4E-12 91.3 2.8 144 161-306 271-476 (490)
333 COG1129 MglA ABC-type sugar tr 98.4 2.9E-07 6.3E-12 86.0 5.3 161 156-321 14-245 (500)
334 PRK07003 DNA polymerase III su 98.4 3.9E-06 8.6E-11 81.9 13.1 164 152-322 11-191 (830)
335 PRK14264 phosphate ABC transpo 98.4 5E-07 1.1E-11 81.2 6.6 59 244-303 205-269 (305)
336 PRK14260 phosphate ABC transpo 98.4 5.9E-07 1.3E-11 78.8 6.9 139 165-306 22-222 (259)
337 cd03291 ABCC_CFTR1 The CFTR su 98.4 5.5E-07 1.2E-11 79.8 6.6 136 165-304 52-229 (282)
338 PRK14254 phosphate ABC transpo 98.4 8.3E-07 1.8E-11 78.9 7.8 140 161-303 50-249 (285)
339 TIGR01257 rim_protein retinal- 98.4 1.1E-06 2.4E-11 95.1 9.8 137 164-303 1953-2140(2272)
340 PRK14961 DNA polymerase III su 98.4 1E-05 2.2E-10 74.5 14.7 163 152-322 11-191 (363)
341 PRK12323 DNA polymerase III su 98.4 5E-06 1.1E-10 80.1 13.0 169 152-322 11-196 (700)
342 PRK14957 DNA polymerase III su 98.4 8.5E-06 1.8E-10 78.1 14.5 152 152-321 11-190 (546)
343 TIGR00954 3a01203 Peroxysomal 98.4 6E-07 1.3E-11 89.0 6.8 141 164-307 466-652 (659)
344 PRK05564 DNA polymerase III su 98.4 1E-05 2.2E-10 73.1 14.2 148 157-321 4-164 (313)
345 PRK14266 phosphate ABC transpo 98.4 8.3E-07 1.8E-11 77.4 6.9 59 244-303 151-215 (250)
346 TIGR00955 3a01204 The Eye Pigm 98.4 9.5E-07 2.1E-11 87.0 8.0 158 165-324 40-264 (617)
347 PRK06645 DNA polymerase III su 98.4 6.5E-06 1.4E-10 78.3 13.3 168 152-323 16-201 (507)
348 PRK14252 phosphate ABC transpo 98.4 7.3E-07 1.6E-11 78.5 6.5 141 163-306 29-233 (265)
349 PRK14255 phosphate ABC transpo 98.4 8.7E-07 1.9E-11 77.4 6.8 62 244-306 153-220 (252)
350 PF00308 Bac_DnaA: Bacterial d 98.4 1.8E-06 4E-11 73.6 8.6 129 179-323 35-180 (219)
351 COG4136 ABC-type uncharacteriz 98.4 1.5E-06 3.2E-11 67.6 6.9 132 173-307 25-208 (213)
352 COG4586 ABC-type uncharacteriz 98.3 8.7E-07 1.9E-11 75.7 6.1 140 165-306 39-230 (325)
353 PRK14257 phosphate ABC transpo 98.3 1E-06 2.2E-11 79.9 6.9 140 164-306 96-297 (329)
354 cd03288 ABCC_SUR2 The SUR doma 98.3 2.9E-06 6.3E-11 74.3 9.6 138 165-306 36-227 (257)
355 TIGR02639 ClpA ATP-dependent C 98.3 7.1E-06 1.5E-10 82.3 13.5 153 155-322 180-358 (731)
356 TIGR02868 CydC thiol reductant 98.3 6E-07 1.3E-11 87.0 5.6 127 163-292 348-528 (529)
357 COG4175 ProV ABC-type proline/ 98.3 4.5E-07 9.7E-12 78.9 4.0 127 175-303 53-235 (386)
358 PRK14962 DNA polymerase III su 98.3 1E-05 2.2E-10 76.6 13.5 163 152-322 9-189 (472)
359 PRK07994 DNA polymerase III su 98.3 9E-06 2E-10 79.2 13.3 163 152-322 11-191 (647)
360 TIGR03345 VI_ClpV1 type VI sec 98.3 4.9E-06 1.1E-10 84.3 11.9 152 154-321 184-362 (852)
361 PRK14960 DNA polymerase III su 98.3 1.4E-05 3.1E-10 77.2 14.4 163 152-322 10-190 (702)
362 PRK10522 multidrug transporter 98.3 5.9E-07 1.3E-11 87.4 5.0 141 163-306 336-522 (547)
363 COG1137 YhbG ABC-type (unclass 98.3 5.9E-08 1.3E-12 79.0 -1.7 144 158-306 12-212 (243)
364 COG4778 PhnL ABC-type phosphon 98.3 1.8E-06 3.9E-11 68.6 6.5 143 165-312 26-231 (235)
365 cd03278 ABC_SMC_barmotin Barmo 98.3 5.3E-06 1.1E-10 69.6 9.8 123 180-304 24-186 (197)
366 TIGR01257 rim_protein retinal- 98.3 5.5E-07 1.2E-11 97.4 4.8 140 163-306 943-1133(2272)
367 TIGR01842 type_I_sec_PrtD type 98.3 1E-06 2.2E-11 85.7 6.3 141 163-306 331-526 (544)
368 TIGR03796 NHPM_micro_ABC1 NHPM 98.3 2.1E-06 4.6E-11 86.2 8.8 140 163-306 492-684 (710)
369 cd03283 ABC_MutS-like MutS-lik 98.3 3.9E-06 8.5E-11 70.4 9.0 24 179-202 26-49 (199)
370 COG4172 ABC-type uncharacteriz 98.3 2E-06 4.3E-11 77.4 7.4 153 165-319 302-516 (534)
371 PRK11176 lipid transporter ATP 98.3 2.4E-06 5.2E-11 83.9 8.7 138 164-306 357-551 (582)
372 PRK14956 DNA polymerase III su 98.3 5.1E-06 1.1E-10 77.8 10.3 164 152-322 13-193 (484)
373 PRK13657 cyclic beta-1,2-gluca 98.3 1.2E-06 2.7E-11 86.0 6.2 139 163-306 348-542 (588)
374 PRK10535 macrolide transporter 98.3 3.1E-06 6.8E-11 83.8 8.7 137 165-304 23-214 (648)
375 cd03243 ABC_MutS_homologs The 98.3 4.7E-06 1E-10 70.3 8.6 115 179-300 30-158 (202)
376 PRK14955 DNA polymerase III su 98.3 1.6E-05 3.6E-10 74.0 13.0 169 153-322 12-199 (397)
377 TIGR00958 3a01208 Conjugate Tr 98.3 1.8E-06 3.9E-11 86.5 7.1 140 164-306 495-686 (711)
378 PRK11331 5-methylcytosine-spec 98.3 1E-05 2.2E-10 75.1 11.3 69 157-227 175-243 (459)
379 PRK14087 dnaA chromosomal repl 98.2 9.4E-06 2E-10 76.6 11.3 131 179-323 142-289 (450)
380 PRK11174 cysteine/glutathione 98.2 1.5E-06 3.3E-11 85.4 6.2 139 163-306 363-556 (588)
381 PRK14951 DNA polymerase III su 98.2 2E-05 4.3E-10 76.6 13.6 166 152-322 11-196 (618)
382 PF05496 RuvB_N: Holliday junc 98.2 4.6E-05 1E-09 64.0 13.8 52 152-203 19-75 (233)
383 PRK07764 DNA polymerase III su 98.2 2.1E-05 4.5E-10 79.1 13.9 161 153-321 11-191 (824)
384 TIGR01242 26Sp45 26S proteasom 98.2 9.1E-06 2E-10 74.9 10.6 148 156-324 121-308 (364)
385 KOG2543 Origin recognition com 98.2 4.1E-05 8.9E-10 68.5 13.9 160 157-321 6-192 (438)
386 PRK14964 DNA polymerase III su 98.2 3.3E-05 7.2E-10 73.1 14.3 163 152-322 8-188 (491)
387 cd03280 ABC_MutS2 MutS2 homolo 98.2 1.6E-06 3.4E-11 73.0 5.0 21 179-199 29-49 (200)
388 TIGR01194 cyc_pep_trnsptr cycl 98.2 1.3E-06 2.9E-11 85.0 5.2 140 164-306 356-543 (555)
389 PRK14958 DNA polymerase III su 98.2 1.9E-05 4.1E-10 75.6 12.8 162 152-321 11-190 (509)
390 cd03282 ABC_MSH4_euk MutS4 hom 98.2 9.2E-07 2E-11 74.5 3.5 118 179-301 30-159 (204)
391 PRK14088 dnaA chromosomal repl 98.2 7.2E-06 1.6E-10 77.2 9.9 130 179-323 131-277 (440)
392 cd03270 ABC_UvrA_I The excisio 98.2 1.1E-05 2.3E-10 69.3 10.1 62 244-306 142-211 (226)
393 PRK10790 putative multidrug tr 98.2 2.5E-06 5.3E-11 83.9 7.0 139 164-306 355-547 (592)
394 TIGR02858 spore_III_AA stage I 98.2 3.2E-06 6.9E-11 74.1 6.8 115 175-297 108-233 (270)
395 TIGR02881 spore_V_K stage V sp 98.2 1.5E-05 3.2E-10 70.0 11.1 149 157-323 6-192 (261)
396 smart00534 MUTSac ATPase domai 98.2 1E-05 2.2E-10 67.1 9.6 115 180-299 1-128 (185)
397 COG4161 ArtP ABC-type arginine 98.2 6.7E-06 1.5E-10 64.8 7.8 146 156-303 8-211 (242)
398 PHA02544 44 clamp loader, smal 98.2 1.8E-05 3.8E-10 71.6 11.9 143 152-319 16-170 (316)
399 cd03227 ABC_Class2 ABC-type Cl 98.2 7.9E-06 1.7E-10 66.3 8.5 113 179-308 22-155 (162)
400 TIGR01069 mutS2 MutS2 family p 98.2 4.8E-06 1E-10 83.3 8.7 115 178-297 322-449 (771)
401 PRK08691 DNA polymerase III su 98.2 2.6E-05 5.6E-10 76.0 13.2 164 152-322 11-191 (709)
402 PRK14952 DNA polymerase III su 98.2 4.3E-05 9.4E-10 74.0 14.7 162 152-321 8-189 (584)
403 PRK14954 DNA polymerase III su 98.2 4.5E-05 9.7E-10 74.4 14.6 169 153-322 12-199 (620)
404 cd03285 ABC_MSH2_euk MutS2 hom 98.2 2.7E-06 5.9E-11 72.6 5.5 114 177-297 29-157 (222)
405 PRK07471 DNA polymerase III su 98.2 5.7E-05 1.2E-09 69.3 14.4 166 152-322 14-213 (365)
406 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 1.8E-06 3.9E-11 86.3 5.0 141 163-306 466-657 (686)
407 cd03240 ABC_Rad50 The catalyti 98.2 2.1E-05 4.5E-10 66.4 10.7 58 248-306 130-195 (204)
408 PRK07940 DNA polymerase III su 98.2 4.7E-05 1E-09 70.4 13.8 155 157-321 5-188 (394)
409 cd03279 ABC_sbcCD SbcCD and ot 98.2 2.5E-05 5.5E-10 66.4 11.2 48 257-304 151-204 (213)
410 PRK05642 DNA replication initi 98.2 6.7E-06 1.5E-10 70.9 7.8 118 179-323 46-180 (234)
411 PRK11160 cysteine/glutathione 98.2 2.7E-06 5.9E-11 83.2 6.0 139 164-306 354-546 (574)
412 smart00382 AAA ATPases associa 98.2 1.2E-05 2.6E-10 62.7 8.6 88 179-270 3-91 (148)
413 cd01131 PilT Pilus retraction 98.2 3.5E-06 7.6E-11 70.8 5.7 112 179-298 2-114 (198)
414 PF05621 TniB: Bacterial TniB 98.2 2.3E-05 4.9E-10 68.8 10.8 106 164-269 44-157 (302)
415 CHL00095 clpC Clp protease ATP 98.2 3E-05 6.5E-10 78.8 13.3 152 156-320 178-352 (821)
416 cd03281 ABC_MSH5_euk MutS5 hom 98.2 4.5E-06 9.7E-11 70.9 6.3 114 179-299 30-160 (213)
417 TIGR01192 chvA glucan exporter 98.1 2.4E-06 5.1E-11 83.8 5.2 140 163-306 348-542 (585)
418 TIGR01193 bacteriocin_ABC ABC- 98.1 8.2E-06 1.8E-10 82.0 8.8 138 163-306 487-681 (708)
419 TIGR02397 dnaX_nterm DNA polym 98.1 9.4E-05 2E-09 68.0 15.1 150 155-322 12-189 (355)
420 KOG0066 eIF2-interacting prote 98.1 3.8E-06 8.2E-11 76.2 5.6 59 249-307 422-483 (807)
421 PRK14970 DNA polymerase III su 98.1 5.4E-05 1.2E-09 70.0 13.4 152 153-322 13-180 (367)
422 cd03275 ABC_SMC1_euk Eukaryoti 98.1 3.6E-05 7.8E-10 67.0 11.6 56 247-303 163-228 (247)
423 TIGR02203 MsbA_lipidA lipid A 98.1 4.5E-06 9.7E-11 81.8 6.5 138 164-306 346-540 (571)
424 COG4148 ModC ABC-type molybdat 98.1 1.9E-05 4.2E-10 67.8 9.3 130 178-307 24-203 (352)
425 PRK14969 DNA polymerase III su 98.1 3.8E-05 8.3E-10 73.9 12.6 162 153-322 12-191 (527)
426 TIGR03346 chaperone_ClpB ATP-d 98.1 4.5E-05 9.7E-10 77.8 13.8 152 155-321 171-348 (852)
427 TIGR02857 CydD thiol reductant 98.1 8.5E-06 1.9E-10 79.0 8.2 132 164-298 336-522 (529)
428 COG4988 CydD ABC-type transpor 98.1 3.3E-06 7.1E-11 79.5 4.8 132 164-300 335-522 (559)
429 cd03271 ABC_UvrA_II The excisi 98.1 6.1E-05 1.3E-09 65.8 12.4 62 245-307 175-245 (261)
430 TIGR00956 3a01205 Pleiotropic 98.1 3.5E-06 7.6E-11 89.9 5.6 130 164-295 777-964 (1394)
431 COG0466 Lon ATP-dependent Lon 98.1 0.00081 1.8E-08 65.1 20.7 155 156-323 322-509 (782)
432 KOG0058 Peptide exporter, ABC 98.1 9.9E-05 2.2E-09 71.3 14.5 160 164-327 482-710 (716)
433 PF00005 ABC_tran: ABC transpo 98.1 8.9E-06 1.9E-10 63.9 6.3 92 175-268 10-137 (137)
434 PRK10789 putative multidrug tr 98.1 3.9E-06 8.5E-11 82.1 4.9 138 164-306 329-522 (569)
435 PRK05896 DNA polymerase III su 98.1 3.3E-05 7.1E-10 74.4 10.9 163 152-322 11-191 (605)
436 PRK03992 proteasome-activating 98.1 6.2E-05 1.3E-09 69.9 12.5 146 157-323 131-316 (389)
437 PRK10865 protein disaggregatio 98.0 7.2E-05 1.6E-09 76.2 13.7 49 155-203 176-224 (857)
438 PRK12422 chromosomal replicati 98.0 4.4E-05 9.6E-10 71.9 11.3 127 179-323 142-285 (445)
439 cd01120 RecA-like_NTPases RecA 98.0 3.8E-05 8.2E-10 61.8 9.6 112 180-295 1-139 (165)
440 TIGR02880 cbbX_cfxQ probable R 98.0 5.9E-05 1.3E-09 67.0 11.5 127 180-322 60-208 (284)
441 TIGR03375 type_I_sec_LssB type 98.0 3.1E-06 6.7E-11 84.8 3.7 139 163-306 478-672 (694)
442 COG4987 CydC ABC-type transpor 98.0 3.5E-05 7.5E-10 71.9 10.1 139 159-301 346-541 (573)
443 PRK06620 hypothetical protein; 98.0 1.6E-05 3.4E-10 67.5 7.3 107 179-323 45-161 (214)
444 PRK14959 DNA polymerase III su 98.0 8E-05 1.7E-09 72.1 13.0 163 152-322 11-191 (624)
445 PRK09111 DNA polymerase III su 98.0 8.3E-05 1.8E-09 72.4 13.1 166 152-322 19-204 (598)
446 PLN03140 ABC transporter G fam 98.0 5.3E-06 1.2E-10 88.5 5.3 156 164-321 894-1119(1470)
447 CHL00181 cbbX CbbX; Provisiona 98.0 0.00017 3.8E-09 64.0 14.1 126 180-322 61-209 (287)
448 TIGR02204 MsbA_rel ABC transpo 98.0 6.9E-06 1.5E-10 80.5 5.8 139 164-306 354-547 (576)
449 TIGR00678 holB DNA polymerase 98.0 0.00019 4.1E-09 59.7 13.5 136 168-321 3-167 (188)
450 COG4172 ABC-type uncharacteriz 98.0 4.7E-06 1E-10 75.0 4.0 156 162-319 22-247 (534)
451 PRK09112 DNA polymerase III su 98.0 0.00012 2.6E-09 66.8 13.2 166 152-321 18-212 (351)
452 KOG0059 Lipid exporter ABCA1 a 98.0 5E-06 1.1E-10 84.9 4.7 142 156-303 570-768 (885)
453 TIGR01846 type_I_sec_HlyB type 98.0 5.8E-06 1.3E-10 82.8 5.1 138 164-306 471-664 (694)
454 TIGR00362 DnaA chromosomal rep 98.0 4.5E-05 9.8E-10 71.4 10.5 129 179-323 137-282 (405)
455 COG1373 Predicted ATPase (AAA+ 98.0 4.2E-05 9.2E-10 71.1 10.1 132 162-316 22-161 (398)
456 cd03284 ABC_MutS1 MutS1 homolo 98.0 2.5E-05 5.4E-10 66.5 7.7 111 179-297 31-157 (216)
457 PRK14086 dnaA chromosomal repl 98.0 7.9E-05 1.7E-09 71.9 11.8 128 180-323 316-460 (617)
458 PRK08903 DnaA regulatory inact 98.0 7.4E-05 1.6E-09 64.2 10.6 127 163-320 26-168 (227)
459 COG3910 Predicted ATPase [Gene 98.0 4E-05 8.6E-10 62.1 8.1 57 249-306 139-201 (233)
460 PF04665 Pox_A32: Poxvirus A32 98.0 3.5E-05 7.6E-10 65.9 8.2 34 180-215 15-48 (241)
461 PTZ00243 ABC transporter; Prov 98.0 1.4E-05 3.1E-10 86.1 7.2 138 165-306 675-854 (1560)
462 PRK12727 flagellar biosynthesi 98.0 0.00046 1E-08 65.5 16.2 25 179-203 351-375 (559)
463 PRK00149 dnaA chromosomal repl 98.0 7E-05 1.5E-09 71.1 11.0 129 179-323 149-294 (450)
464 PRK14953 DNA polymerase III su 98.0 0.00025 5.5E-09 67.5 14.7 51 153-203 12-63 (486)
465 PRK11034 clpA ATP-dependent Cl 97.9 2.4E-05 5.3E-10 78.0 7.8 151 156-321 185-361 (758)
466 cd03287 ABC_MSH3_euk MutS3 hom 97.9 3.7E-05 7.9E-10 65.5 7.8 115 179-299 32-160 (222)
467 PLN03140 ABC transporter G fam 97.9 2.1E-05 4.6E-10 84.0 7.7 79 248-326 345-437 (1470)
468 cd03273 ABC_SMC2_euk Eukaryoti 97.9 0.00013 2.8E-09 63.7 11.5 58 247-306 174-241 (251)
469 COG4674 Uncharacterized ABC-ty 97.9 1.4E-06 2.9E-11 70.9 -1.1 43 161-205 16-58 (249)
470 PRK08116 hypothetical protein; 97.9 4.5E-05 9.8E-10 67.1 8.3 99 180-293 116-221 (268)
471 PRK06305 DNA polymerase III su 97.9 0.00022 4.7E-09 67.5 13.4 51 153-203 13-64 (451)
472 PRK10787 DNA-binding ATP-depen 97.9 0.0011 2.5E-08 66.8 19.1 156 156-323 321-507 (784)
473 TIGR03689 pup_AAA proteasome A 97.9 0.0001 2.2E-09 70.1 11.0 153 157-323 182-379 (512)
474 PLN03130 ABC transporter C fam 97.9 2.7E-05 5.9E-10 84.2 8.1 132 164-298 631-805 (1622)
475 TIGR01271 CFTR_protein cystic 97.9 2.4E-05 5.2E-10 84.3 7.5 137 165-306 441-620 (1490)
476 PLN03232 ABC transporter C fam 97.9 2.4E-05 5.2E-10 84.3 7.4 131 165-298 632-805 (1495)
477 PF00004 AAA: ATPase family as 97.9 2.5E-05 5.4E-10 60.7 5.7 23 181-203 1-23 (132)
478 TIGR00957 MRP_assoc_pro multi 97.9 3.7E-05 8E-10 83.1 8.8 139 164-306 652-834 (1522)
479 cd03272 ABC_SMC3_euk Eukaryoti 97.9 0.00014 3E-09 63.2 10.9 57 247-305 166-232 (243)
480 COG2401 ABC-type ATPase fused 97.9 8.6E-06 1.9E-10 73.6 3.3 124 180-303 411-578 (593)
481 TIGR00956 3a01205 Pleiotropic 97.9 4E-05 8.7E-10 82.0 8.8 158 166-326 77-310 (1394)
482 PTZ00454 26S protease regulato 97.9 0.00016 3.5E-09 67.1 11.6 146 157-322 145-329 (398)
483 PRK08118 topology modulation p 97.9 3.9E-05 8.3E-10 62.6 6.7 34 180-213 3-37 (167)
484 PRK00409 recombination and DNA 97.9 0.00012 2.7E-09 73.6 11.6 119 177-300 326-457 (782)
485 PRK14971 DNA polymerase III su 97.9 0.00034 7.3E-09 68.6 14.1 151 153-321 13-192 (614)
486 COG4138 BtuD ABC-type cobalami 97.9 1.2E-05 2.7E-10 64.3 3.4 119 175-295 24-194 (248)
487 COG0593 DnaA ATPase involved i 97.9 9.8E-05 2.1E-09 67.8 9.8 130 178-324 113-259 (408)
488 PF00448 SRP54: SRP54-type pro 97.9 0.00014 3.1E-09 60.8 10.0 87 178-266 1-92 (196)
489 KOG0056 Heavy metal exporter H 97.9 2.3E-05 5E-10 72.2 5.5 46 157-204 545-590 (790)
490 KOG0061 Transporter, ABC super 97.9 4.2E-05 9.1E-10 75.0 7.8 155 165-324 45-268 (613)
491 PTZ00265 multidrug resistance 97.9 6.4E-05 1.4E-09 80.7 9.7 39 164-204 399-437 (1466)
492 PRK07133 DNA polymerase III su 97.8 0.00033 7.2E-09 69.0 13.4 159 153-321 14-189 (725)
493 PTZ00361 26 proteosome regulat 97.8 0.00019 4E-09 67.3 11.0 146 157-322 183-367 (438)
494 PRK13695 putative NTPase; Prov 97.8 1.5E-05 3.3E-10 65.4 3.5 25 180-204 2-26 (174)
495 cd03276 ABC_SMC6_euk Eukaryoti 97.8 0.00022 4.8E-09 59.8 10.5 119 180-299 23-182 (198)
496 PRK14965 DNA polymerase III su 97.8 0.00032 7E-09 68.4 13.0 52 152-203 11-63 (576)
497 KOG0989 Replication factor C, 97.8 0.00017 3.8E-09 62.8 9.9 160 152-322 31-201 (346)
498 COG4170 SapD ABC-type antimicr 97.8 2.9E-05 6.4E-10 63.9 4.9 42 160-203 17-58 (330)
499 TIGR03499 FlhF flagellar biosy 97.8 0.00021 4.6E-09 63.4 10.8 86 178-266 194-281 (282)
500 PRK12608 transcription termina 97.8 0.00026 5.7E-09 64.3 11.2 99 168-267 122-230 (380)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-37 Score=304.64 Aligned_cols=299 Identities=28% Similarity=0.452 Sum_probs=233.0
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHhhhHHHHHHHHHHHHHHHhh---
Q 046889 18 VDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLED--- 94 (333)
Q Consensus 18 ~~~l~~~~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~vr~~a~~~ed~ld~--- 94 (333)
++++.+.+.+++..+.+.+.++..|+++|..|+.++.++++ ++ ........|...+++++|++||+++.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a-------~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA-------KR-DDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------hc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888888899999999988776666654 33 45677889999999999999999986
Q ss_pred ---HHh-----------hhhhhcCCCCC-ChhhhhHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcccccccc-ccc
Q 046889 95 ---EVK-----------VNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEG-FYN 158 (333)
Q Consensus 95 ---~~~-----------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 158 (333)
..+ .+.-|+.+++. +...-+.+++++-+..+.++.+.....+........+.+.....|.. ...
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 000 01112212222 44555667777777777777776665555522111122222223321 122
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE 237 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 237 (333)
+|.+..++.+...|..++..+++|+||||+||||||+.++++.. ++.+|+..+||+||++++...+.++|+..++..+
T Consensus 161 -VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred -ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999999887778999999999999999999999988 9999999999999999999999999999998753
Q ss_pred C--CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCC--CcEEEEeeCChHHHhh-cccce-EecCCCCH
Q 046889 238 L--PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQ-MQAHI-VDVRTLTE 311 (333)
Q Consensus 238 ~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~--g~~vivTTr~~~v~~~-~~~~~-~~l~~L~~ 311 (333)
. ......+.+..|.+.|..+||+|||||+|+..+|+.+..|++.. ||+|++|||+..||.. ++... +++++|++
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 2 33334688999999999999999999999999999998776544 8999999999999998 77655 99999999
Q ss_pred HHHHHHHHhhcccC
Q 046889 312 EESWRSAEGKRRVC 325 (333)
Q Consensus 312 ~e~~~lf~~~a~~~ 325 (333)
+|||.||++++|..
T Consensus 320 ~eaW~LF~~~v~~~ 333 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPN 333 (889)
T ss_pred cccHHHHHHhhccc
Confidence 99999999999986
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=5.5e-26 Score=202.64 Aligned_cols=165 Identities=27% Similarity=0.477 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 046889 162 RESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL- 238 (333)
Q Consensus 162 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~- 238 (333)
|+.++++|...|.. ++.++|+|+|++|+||||||..++++...+.+|+.++|+.++...+...+++.|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999987 788999999999999999999999887778999999999999988889999999999988622
Q ss_pred --CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCC--CCCCcEEEEeeCChHHHhhccc--ceEecCCCCHH
Q 046889 239 --PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPY--GNDGCKFLLTSRSRAACNQMQA--HIVDVRTLTEE 312 (333)
Q Consensus 239 --~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~--~~~g~~vivTTr~~~v~~~~~~--~~~~l~~L~~~ 312 (333)
...+.......+.+.|.++++||||||+|+...|..+..++ ...||+||||||+..++..+.. ..|++++|+++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45567889999999999999999999999999887774433 3348999999999999887764 44999999999
Q ss_pred HHHHHHHhhcccCC
Q 046889 313 ESWRSAEGKRRVCL 326 (333)
Q Consensus 313 e~~~lf~~~a~~~~ 326 (333)
|+++||++.++...
T Consensus 161 ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 161 EALELFKKRAGRKE 174 (287)
T ss_dssp HHHHHHHHHHTSHS
T ss_pred cccccccccccccc
Confidence 99999999998655
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.6e-19 Score=187.69 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=122.4
Q ss_pred ccccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe---CCCC---------
Q 046889 155 GFYNFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV---SQTP--------- 220 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~~--------- 220 (333)
...+++|++..++.+..++. .++.++|+|+||||+||||||+.+|+... .+|+..+|+.- +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 34678999999999988774 45678999999999999999999999765 67888777631 1110
Q ss_pred --C-HHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCC--CCCcEEEEeeCChH
Q 046889 221 --S-ITKIQDEIAGWLGIK-ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYG--NDGCKFLLTSRSRA 294 (333)
Q Consensus 221 --~-~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~--~~g~~vivTTr~~~ 294 (333)
. ...+.+.++..+-.. ...... ...+++.+.++++||||||+|+..+|+.+..... ..|++||||||+..
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 1 112333444333211 111111 2457788999999999999999988888754332 45999999999999
Q ss_pred HHhhccc-ceEecCCCCHHHHHHHHHhhcccCC
Q 046889 295 ACNQMQA-HIVDVRTLTEEESWRSAEGKRRVCL 326 (333)
Q Consensus 295 v~~~~~~-~~~~l~~L~~~e~~~lf~~~a~~~~ 326 (333)
++..++. ..|+++.|+++++|+||+++||+..
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~ 368 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN 368 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC
Confidence 9877644 4499999999999999999999753
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.29 E-value=3.4e-12 Score=109.33 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=105.8
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCC----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTP---- 220 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~---- 220 (333)
|+....++++...+..++ +++|+||||+|||||++.+.+-.++... .+ .....+++|.+
T Consensus 12 y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 12 YGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred ECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 455567777777777788 9999999999999999999976653220 00 00111122211
Q ss_pred ----------------------C--HHHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 221 ----------------------S--ITKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 221 ----------------------~--~~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
+ ........++.++... ....+ .+.+...+++.|.++.-+|+||++.+..
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 1 1234555677776642 23333 3445677999999999999999999876
Q ss_pred hhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccceEecC------------CCCHHHHHHHHHhhc
Q 046889 271 ELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR------------TLTEEESWRSAEGKR 322 (333)
Q Consensus 271 ~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~------------~L~~~e~~~lf~~~a 322 (333)
|+.. +...+. ..|..||+++|+.+.|.+++++.+-|+ -++++--.+.|.-.+
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~ 240 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDA 240 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCce
Confidence 5332 222223 448889999999999999988775443 366677777666543
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=8.9e-12 Score=102.25 Aligned_cols=148 Identities=11% Similarity=0.191 Sum_probs=105.1
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-------------------Ee
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-------------------VV 216 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------------------~v 216 (333)
....||....++.+...+..++ +++|+||+|+|||||.|++.....+++ ..+|+ .|
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCee
Confidence 3456787788888888888888 999999999999999999987655432 12222 12
Q ss_pred CCCCC-------------------------HHHHHHHHHHHhCCCCCCC------CCHHHHHHHHHHHHccCceEEEEeC
Q 046889 217 SQTPS-------------------------ITKIQDEIAGWLGIKELPD------NDELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 217 ~~~~~-------------------------~~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
.|.++ ..+....++.++|+.+... +..++++-.|.+.|.=++-++++|+
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 23332 2334556677777752221 2245667789999999999999999
Q ss_pred CCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889 266 LWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 266 v~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
+.+..|- ......+...|-..|++||...+|..++++.+.++.
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence 9987552 222233455688999999999999999988865543
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=9.7e-12 Score=106.05 Aligned_cols=139 Identities=19% Similarity=0.313 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CC--------eEEEEEeCCCCC----------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FD--------EVAMAVVSQTPS---------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~--------~~~wv~v~~~~~---------- 221 (333)
..++++...+..+. +++|+||||+|||||++.+.+..++... |. .....+++|...
T Consensus 18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence 57888888787887 9999999999999999999986543210 10 012334444220
Q ss_pred --------------------HHHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 222 --------------------ITKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 222 --------------------~~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
..+.....++++++.+.. ..+ -+.++..|++.|.+++-||+||++....|
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~ 175 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQ 175 (254)
T ss_pred HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHH
Confidence 124455667777765322 223 34456679999999999999998876533
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+.......|+.||++|||........+..+
T Consensus 176 ~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 176 KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE
Confidence 444434444459999999999998777766663
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=1.7e-09 Score=100.82 Aligned_cols=166 Identities=17% Similarity=0.099 Sum_probs=113.2
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW 232 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 232 (333)
..++||+++++.|...+.+ +....+.|+|+.|+|||++++.+++........-..+++.+....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 5689999999999888743 234568899999999999999999987654322345566666666778888899998
Q ss_pred hCCC--CCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch------hhhhccC-C--CCCCCcEEEEeeCChHHHh--
Q 046889 233 LGIK--ELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQI------ELDRVGI-P--YGNDGCKFLLTSRSRAACN-- 297 (333)
Q Consensus 233 l~~~--~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~-~--~~~~g~~vivTTr~~~v~~-- 297 (333)
+... .....+..+....+.+.+.. ++.+|||||++... .+..+.. . .......+|.++++..+..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 8652 12223456666777777764 45899999997642 2333211 1 1111334677777654432
Q ss_pred ------hcccceEecCCCCHHHHHHHHHhhc
Q 046889 298 ------QMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 298 ------~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
.+....+.+.+++.++..+++..++
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 2223348999999999999999876
No 8
>PF05729 NACHT: NACHT domain
Probab=99.18 E-value=4.7e-10 Score=91.26 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCC----CeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMF----DEVAMAVVSQTPSIT---KIQDEIAGWLGIKELPDNDELVRASLLC 251 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 251 (333)
+++.|+|++|+||||+++.++......... ...+|.......... .+...+...+.. ....... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPE---SIAPIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhcc---chhhhHH---HHH
Confidence 478999999999999999999887655433 345565555433322 233333333322 1111111 222
Q ss_pred HH-HccCceEEEEeCCCCchh-------------hhhccCCC-CCCCcEEEEeeCChHH---Hhhcccc-eEecCCCCHH
Q 046889 252 KR-IEKQRVLVILDDLWVQIE-------------LDRVGIPY-GNDGCKFLLTSRSRAA---CNQMQAH-IVDVRTLTEE 312 (333)
Q Consensus 252 ~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~~-~~~g~~vivTTr~~~v---~~~~~~~-~~~l~~L~~~ 312 (333)
.. ...++++||+|++..... +..+ ++. ...+++++||+|.... ....... .+.+.+|+++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQL-LPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHH-hhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 22 246889999998754321 1222 222 2348999999998776 3334444 3999999999
Q ss_pred HHHHHHHhh
Q 046889 313 ESWRSAEGK 321 (333)
Q Consensus 313 e~~~lf~~~ 321 (333)
+..+++.++
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999999876
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=2.1e-09 Score=99.22 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=109.7
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CC---CeEEEEEeCCCCCHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MF---DEVAMAVVSQTPSITKIQDE 228 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f---~~~~wv~v~~~~~~~~~~~~ 228 (333)
..++||+.+++.|...+.+ +....+.|+||.|+|||++++.+++...... .. -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999988864 3345789999999999999999998764321 11 13456666666677788889
Q ss_pred HHHHh---CCC-CCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch----h-hhhcc-C--C--CCCCCcEEEEeeCC
Q 046889 229 IAGWL---GIK-ELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI----E-LDRVG-I--P--YGNDGCKFLLTSRS 292 (333)
Q Consensus 229 i~~~l---~~~-~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~-~~~l~-~--~--~~~~g~~vivTTr~ 292 (333)
|+.++ +.. +....+..+....+.+.+. +++++||||+++... + +..+. . . ..+....+|.+|+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99888 332 1122244555566666664 467899999987551 1 22221 1 1 11123456667765
Q ss_pred hHHHh--------hcccceEecCCCCHHHHHHHHHhhc
Q 046889 293 RAACN--------QMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 293 ~~v~~--------~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..... .+....+.+++++.++..+++.+++
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 54322 2222348899999999999999876
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.16 E-value=1.4e-10 Score=93.22 Aligned_cols=139 Identities=17% Similarity=0.265 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE---------------------EeCCCC-
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA---------------------VVSQTP- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---------------------~v~~~~- 220 (333)
.+.++++...+..++ .+.|+||+|+|||||.+.+|...++.. ..+|+ .|.|++
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeecc
Confidence 557777888787788 899999999999999999998887542 11121 122222
Q ss_pred -----------------------CHHHHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-
Q 046889 221 -----------------------SITKIQDEIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQI- 270 (333)
Q Consensus 221 -----------------------~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~- 270 (333)
....-....++..|+.. ..-+..+++...|.+.+-+++-+|+-|++.-..
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD 169 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169 (223)
T ss_pred ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence 11223344555556541 122235667788999999999999999886432
Q ss_pred ---hhh--hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 271 ---ELD--RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 271 ---~~~--~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|. .+...++..|+.||++||+..+.+.+....+.+
T Consensus 170 p~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred hHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEE
Confidence 233 333345666999999999999988887766444
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=5.1e-11 Score=100.45 Aligned_cols=147 Identities=16% Similarity=0.254 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------------CC---eEEEEEeC
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------------FD---EVAMAVVS 217 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~---~~~wv~v~ 217 (333)
||....++++...+..|+ +|+|+||+|+|||||.+.+.+-.++... |+ .--|-++-
T Consensus 13 f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 13 FGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHH
Confidence 444667778887788888 9999999999999999999977643221 11 01133222
Q ss_pred CCC------------CHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 218 QTP------------SITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 218 ~~~------------~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
++- ........+++.+|+.+..... -..+...|.+.|...+-+|+||++....| +.
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq 170 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHH
Confidence 221 1133567778888886444333 34556779999999999999999986633 22
Q ss_pred hccCC-CCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889 274 RVGIP-YGNDGCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 274 ~l~~~-~~~~g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
..... ....+..|+++||+.+-|-.++++++.|..
T Consensus 171 ~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 171 DELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 21111 133467899999999998888877654443
No 12
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.13 E-value=5.7e-10 Score=106.04 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=96.3
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-C--C-eEEEEEeCCCC--------------
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-F--D-EVAMAVVSQTP-------------- 220 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f--~-~~~wv~v~~~~-------------- 220 (333)
+.+....++.+...+..+. .|+|+||||+|||||++.+.+...+... . . .....++.|..
T Consensus 331 y~~~~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 331 YDGGRLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred cCCCceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHH
Confidence 3344567777777777777 8999999999999999999776643311 0 0 01111111111
Q ss_pred ----C-HHHHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhcc---CCCCCCCcE
Q 046889 221 ----S-ITKIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRVG---IPYGNDGCK 285 (333)
Q Consensus 221 ----~-~~~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~---~~~~~~g~~ 285 (333)
. .....+..+.+++.+.. ...+ -+..+-.+...+..++-+||||+|.|..|++.+. -.+..-...
T Consensus 409 ~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt 488 (530)
T COG0488 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT 488 (530)
T ss_pred hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe
Confidence 0 13445666677766411 1122 2334556778888899999999999998766652 122222334
Q ss_pred EEEeeCChHHHhhcccceEecCC
Q 046889 286 FLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 286 vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
||++||++.+.+.+++..+.+.+
T Consensus 489 vl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 489 VLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred EEEEeCCHHHHHhhcceEEEEcC
Confidence 99999999999999988876664
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.13 E-value=5.1e-10 Score=99.89 Aligned_cols=145 Identities=20% Similarity=0.275 Sum_probs=95.9
Q ss_pred ccccccccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 153 SEGFYNFKSRESTM---KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 153 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
|.....++|.+..+ .-|...+..+.+.-..+|||+|+||||||+.+..... ..| ..++...+-.+-++.+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHHH
Confidence 44556677766555 3455566678888899999999999999999998654 233 3333322212222333
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChHH----Hhhccc
Q 046889 230 AGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRAA----CNQMQA 301 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~v----~~~~~~ 301 (333)
++... .....+++.+|++|++..- .+-+.+ +|+-..|.-++| ||.|+.+ +..-..
T Consensus 93 ~e~a~----------------~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 93 IEEAR----------------KNRLLGRRTILFLDEIHRFNKAQQDAL-LPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred HHHHH----------------HHHhcCCceEEEEehhhhcChhhhhhh-hhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 32211 1223368899999999754 334444 787788887777 8888876 222233
Q ss_pred ceEecCCCCHHHHHHHHHhh
Q 046889 302 HIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 302 ~~~~l~~L~~~e~~~lf~~~ 321 (333)
.++.+++|+.++-.+++.+-
T Consensus 156 ~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred heeeeecCCHHHHHHHHHHH
Confidence 44999999999999999883
No 14
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.10 E-value=1.4e-10 Score=110.06 Aligned_cols=146 Identities=18% Similarity=0.302 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-C--C-eEEEEEeCCCCCHH------------
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-F--D-EVAMAVVSQTPSIT------------ 223 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f--~-~~~wv~v~~~~~~~------------ 223 (333)
+|....++++...+.+++ .|+|+|.||+|||||++.+.+...+... . . .....+++|.....
T Consensus 13 ~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~ 90 (530)
T COG0488 13 YGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEG 90 (530)
T ss_pred eCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhh
Confidence 466677788888888888 8999999999999999999988754321 0 1 11223344443211
Q ss_pred ------------------------------------------HHHHHHHHHhCCCCC----CCCC-HHHHHHHHHHHHcc
Q 046889 224 ------------------------------------------KIQDEIAGWLGIKEL----PDND-ELVRASLLCKRIEK 256 (333)
Q Consensus 224 ------------------------------------------~~~~~i~~~l~~~~~----~~~~-~~~~~~~l~~~l~~ 256 (333)
.-...++..++.+.. ...+ .......|.+.|-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~ 170 (530)
T COG0488 91 FGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170 (530)
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence 111223333444321 1111 23456779999999
Q ss_pred CceEEEEeCCCCchhhhhccC----CCCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889 257 QRVLVILDDLWVQIELDRVGI----PYGNDGCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 257 k~~LlVlDdv~~~~~~~~l~~----~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
++-+|+||+|.|..|+..+.. -..-.| .|||+||++.+.+.+++++++++.
T Consensus 171 ~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 171 EPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 999999999999988665521 112235 799999999999999998876654
No 15
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.09 E-value=7.1e-09 Score=91.49 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND 242 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 242 (333)
...+..+...+.. +.+++.|+|++|+|||||++.+++...... . ...|+ +....+..+++..++..++.+. ...+
T Consensus 29 ~~~~~~l~~~~~~-~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~-~~~~ 103 (269)
T TIGR03015 29 KRAMAYLEYGLSQ-REGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLET-EGRD 103 (269)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCC-CCCC
Confidence 4455555554433 335899999999999999999998765321 1 12232 3334566788889999988742 2233
Q ss_pred HHHHHHHHHHH-----HccCceEEEEeCCCCch--hhhhcc--CCC-CCC--CcEEEEeeCChHHHhh--------cccc
Q 046889 243 ELVRASLLCKR-----IEKQRVLVILDDLWVQI--ELDRVG--IPY-GND--GCKFLLTSRSRAACNQ--------MQAH 302 (333)
Q Consensus 243 ~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~--~~~-~~~--g~~vivTTr~~~v~~~--------~~~~ 302 (333)
.......+... ..++++++|+||++... .+..+. ... ... ...|++|.. ...... +..+
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~-~~~~~~l~~~~~~~l~~r 182 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ-PEFRETLQSPQLQQLRQR 182 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC-HHHHHHHcCchhHHHHhh
Confidence 33333333332 25678999999998752 233321 111 111 224455543 333211 1111
Q ss_pred ---eEecCCCCHHHHHHHHHhhcc
Q 046889 303 ---IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 303 ---~~~l~~L~~~e~~~lf~~~a~ 323 (333)
.+.+++|+.+|..+++.....
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHH
Confidence 278999999999999987764
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.8e-10 Score=96.35 Aligned_cols=135 Identities=20% Similarity=0.306 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------------------CCCeEEEEEeCCCC----C-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------------------MFDEVAMAVVSQTP----S- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------------------~f~~~~wv~v~~~~----~- 221 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+-.++.. .+..+-. |.|++ +
T Consensus 22 ~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQm--VFQDp~~SLnP 97 (252)
T COG1124 22 ALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQM--VFQDPYSSLNP 97 (252)
T ss_pred hhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeE--EecCCccccCc
Confidence 6666666666788 999999999999999999987654321 0111111 11221 1
Q ss_pred ---HH----------------HHHHHHHHHhCCC-------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 222 ---IT----------------KIQDEIAGWLGIK-------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 222 ---~~----------------~~~~~i~~~l~~~-------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
+. .-..+++.+++++ +..-...+..+-.|.+.|.-++-+||+|++.+..|
T Consensus 98 ~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQ 177 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177 (252)
T ss_pred chhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHH
Confidence 11 1145667777775 11122234556779999999999999999987744
Q ss_pred ---hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 272 ---LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 ---~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
|+-+.-.....+-.+|++||+..++..++++.
T Consensus 178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe
Confidence 33332222344778999999999999988876
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.06 E-value=6.2e-10 Score=90.40 Aligned_cols=138 Identities=14% Similarity=0.231 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC--------------------CHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP--------------------SIT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--------------------~~~- 223 (333)
.++++.....+++ |++|.|+||+||||+++.++....+.+.--.+.-++....+ +.+
T Consensus 17 AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 17 AVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred hhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 4556666556677 99999999999999999999887654321111011111111 111
Q ss_pred -----------------HHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hh
Q 046889 224 -----------------KIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DR 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~ 274 (333)
.-...+.+.+++.+. .-+......-.+.+.|-.++-++|||++.+..|+ .+
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d 174 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD 174 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH
Confidence 112223333333211 0111223344678888899999999999987663 33
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+.....+.|-.||+.||..+-.+.++++.+
T Consensus 175 fi~q~k~egr~viFSSH~m~EvealCDrvi 204 (245)
T COG4555 175 FIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204 (245)
T ss_pred HHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence 445556668889999999998887777774
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=4.7e-10 Score=94.37 Aligned_cols=140 Identities=12% Similarity=0.232 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------------CCeEEEEEeCCCCC----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------------FDEVAMAVVSQTPS---- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~v~~~~~---- 221 (333)
.++.+...+..++ +++|+||+|+|||||+..+..-.++... |...-.-.+.|.++
T Consensus 20 ~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 20 ALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 4555566666788 9999999999999999999865543210 11111122333331
Q ss_pred --------------------HHHHHHHHHHHhCCCCCC------CC-CHHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889 222 --------------------ITKIQDEIAGWLGIKELP------DN-DELVRASLLCKRIEKQRVLVILDDLWVQIE--- 271 (333)
Q Consensus 222 --------------------~~~~~~~i~~~l~~~~~~------~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 271 (333)
.......+++.+++.+.. .. .-++++..+.+.|..++-+|+.|++....|
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 122344566666664111 12 245667789999999999999999985533
Q ss_pred ---hhhccCCC-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 272 ---LDRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 ---~~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+.... ...|..||++||++.++.. +++.|.+.
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~-~dr~i~l~ 216 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKY-ADRVIELK 216 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh-CCEEEEEe
Confidence 33332333 2348899999999999984 44455444
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=1.1e-09 Score=94.07 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH---------
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI--------- 229 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i--------- 229 (333)
|+||+.+++.|...+..+....+.|+||.|+|||+|++.+.+..+... + ..+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 789999999999999887667999999999999999999998774321 1 222333323322 2111121
Q ss_pred -HHHhC----CCCC------CCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch-h----------hhhccCC-CCCCCc
Q 046889 230 -AGWLG----IKEL------PDNDELVRASLLCKRIEK--QRVLVILDDLWVQI-E----------LDRVGIP-YGNDGC 284 (333)
Q Consensus 230 -~~~l~----~~~~------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~-~----------~~~l~~~-~~~~g~ 284 (333)
...++ .... ...........+.+.+.. ++.+||+||+.... . +..+... ......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 11121 1000 111223334444444443 45999999986554 1 1111111 122344
Q ss_pred EEEEeeCChHHHhh--------cccce-EecCCCCHHHHHHHHHhhc
Q 046889 285 KFLLTSRSRAACNQ--------MQAHI-VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 285 ~vivTTr~~~v~~~--------~~~~~-~~l~~L~~~e~~~lf~~~a 322 (333)
.+|++..+...... .+... +.+++|+.+++++++....
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF 204 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence 55566655544332 11122 8999999999999999853
No 20
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=9.7e-10 Score=90.14 Aligned_cols=163 Identities=12% Similarity=0.175 Sum_probs=99.6
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hcCCCeEEEE------------------
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKMFDEVAMA------------------ 214 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~~~~wv------------------ 214 (333)
+..-+||....++.+.-.+..+. |.+++||+|+|||||++.+...... ..+.+..+++
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~ 89 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR 89 (253)
T ss_pred ceeEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence 34557888888888888777777 9999999999999999998644321 1111122221
Q ss_pred --EeCCCCC--HHHHH-----------------HHH----HHH----------hCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889 215 --VVSQTPS--ITKIQ-----------------DEI----AGW----------LGIKELPDNDELVRASLLCKRIEKQRV 259 (333)
Q Consensus 215 --~v~~~~~--~~~~~-----------------~~i----~~~----------l~~~~~~~~~~~~~~~~l~~~l~~k~~ 259 (333)
.|.|.++ +..+. .++ ++. +......-+..++++-.|.+.|.-++-
T Consensus 90 vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe 169 (253)
T COG1117 90 VGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE 169 (253)
T ss_pred heeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc
Confidence 1112221 11111 111 111 111122222345566678999999999
Q ss_pred EEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce--EecCC-CCHHHHHHHHHh
Q 046889 260 LVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI--VDVRT-LTEEESWRSAEG 320 (333)
Q Consensus 260 LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~--~~l~~-L~~~e~~~lf~~ 320 (333)
+|++|++.+..| .+.+...+. ..-.|||+|||..-|.++++.. +.+.. ....+..++|.+
T Consensus 170 VlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 170 VLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred EEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 999999987744 445544434 3557999999999998888776 33333 344555556543
No 21
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.98 E-value=2.4e-09 Score=87.87 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=74.4
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRAS 248 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 248 (333)
.+.+++ +++|+|++|+|||||++.+.+...+... ++......+++... -..-+....
T Consensus 21 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv 80 (177)
T cd03222 21 VVKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRV 80 (177)
T ss_pred EECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHH
Confidence 345666 9999999999999999999987654321 11111112222211 122344566
Q ss_pred HHHHHHccCceEEEEeCCCCchhhh------hccCCCCCC-CcEEEEeeCChHHHhhcccceEecC
Q 046889 249 LLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.+.+..++-+++||++.+..+.. .+....... +..||++||+......+++..+.+.
T Consensus 81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 146 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146 (177)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEc
Confidence 7888888899999999998764422 222222223 3779999999998877766664444
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.97 E-value=6e-10 Score=93.05 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE---------------------Ee
Q 046889 158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA---------------------VV 216 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---------------------~v 216 (333)
.-+|....++.+...+..++ +.+|+|++|+|||||.+.+.+..+++. ..+|+ .+
T Consensus 16 ~~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~~~~~ir~r~Gvl 90 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEEELYEIRKRMGVL 90 (263)
T ss_pred eecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHHHHHHHHhheeEE
Confidence 34577778888888787888 999999999999999999998766432 11111 11
Q ss_pred CCC---------------------CCHHHHHHHH----HHHhCCCCC-CC------CCHHHHHHHHHHHHccCceEEEEe
Q 046889 217 SQT---------------------PSITKIQDEI----AGWLGIKEL-PD------NDELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 217 ~~~---------------------~~~~~~~~~i----~~~l~~~~~-~~------~~~~~~~~~l~~~l~~k~~LlVlD 264 (333)
-|. .-++..++++ ++..|++.. .. ..-...+..+.+.+.-.+-|+++|
T Consensus 91 FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D 170 (263)
T COG1127 91 FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD 170 (263)
T ss_pred eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec
Confidence 110 0112333333 444555422 11 123445677999999999999999
Q ss_pred CCCCchh------hhhccCCCCCC-CcEEEEeeCChHHHhhcccce
Q 046889 265 DLWVQIE------LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 265 dv~~~~~------~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~ 303 (333)
++.+..| +..+.....+. |+.++++||+.+-+..++++.
T Consensus 171 EPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 171 EPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE
Confidence 9886643 55554444433 889999999999888777766
No 23
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.96 E-value=1.2e-09 Score=92.52 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=86.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------EEEEEeCCCC-------CH---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------VAMAVVSQTP-------SI--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------~~wv~v~~~~-------~~--- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+ +.
T Consensus 15 ~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 15 ILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 4555555566777 9999999999999999999976543211 000 0112223321 00
Q ss_pred -----------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC
Q 046889 223 -----------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY 279 (333)
Q Consensus 223 -----------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~ 279 (333)
.....++++.+++..... .+ .+.....+.+.+..++-+++||++.+..| +..+....
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 112344556666542211 12 33445668888888999999999987644 22222222
Q ss_pred CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 280 GNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 280 ~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
...|..||++||+...+..++++.+.+.
T Consensus 173 ~~~~~tii~~sH~~~~~~~~~d~i~~l~ 200 (205)
T cd03226 173 AAQGKAVIVITHDYEFLAKVCDRVLLLA 200 (205)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2347789999999998877777665543
No 24
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.95 E-value=9e-10 Score=98.01 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=95.9
Q ss_pred ccccc-hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCe----------EEEEEeCCCCC
Q 046889 157 YNFKS-RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDE----------VAMAVVSQTPS 221 (333)
Q Consensus 157 ~~~~g-r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~----------~~wv~v~~~~~ 221 (333)
...+| ....++.+...+..++ +++++|+||+|||||.+.+.+..++.+. +.. ....++++.+.
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 34556 4667777887777787 9999999999999999999988764320 000 01123333321
Q ss_pred ------H------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 222 ------I------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 222 ------~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
. ......+++.+++..... .+ -+...-.+...|..++-+++||++.+..|
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLD 168 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168 (293)
T ss_pred CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCC
Confidence 1 234556777777754211 11 23445678888899999999999987644
Q ss_pred ------hhhccCCCCCCC-cEEEEeeCChHHHhhcccce
Q 046889 272 ------LDRVGIPYGNDG-CKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 ------~~~l~~~~~~~g-~~vivTTr~~~v~~~~~~~~ 303 (333)
+..+.......| ..|++|||....+..++++.
T Consensus 169 p~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v 207 (293)
T COG1131 169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV 207 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEE
Confidence 333323334444 78999999999988877655
No 25
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.95 E-value=9.8e-10 Score=98.55 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~- 223 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... +.. ....++++.+ +..
T Consensus 8 ~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 8 AVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4555555566777 9999999999999999999977543211 000 0012223322 111
Q ss_pred -----------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889 224 -----------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~ 274 (333)
.....+++.+++..... .+ .+...-.+...|..++-+++||++.+..| +..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 11234556666542111 12 24445678888889999999999987744 222
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+.......|..||+|||+.+.+..++++.
T Consensus 166 ~l~~~~~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 166 YIRALKEEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 22223334788999999999877766665
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.95 E-value=7.7e-10 Score=99.25 Aligned_cols=143 Identities=13% Similarity=0.185 Sum_probs=88.4
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC-----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP----- 220 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~----- 220 (333)
+|....++.+...+..++ +++|+|+||+|||||++.+.+...+... +. .....++++.+
T Consensus 17 ~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred ECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 344446677777777787 9999999999999999999987644221 00 00112233322
Q ss_pred -CHH------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 221 -SIT------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
+.. .....+++.+++...... + -+...-.+...|..++-+++||++.+..|
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 95 FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 111 112234455555321111 1 23345568888889999999999987754
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+.......|..||+|||+.+.+..++++.+
T Consensus 175 ~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~ 209 (306)
T PRK13537 175 HLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC 209 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 222222333448889999999998877776663
No 27
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=1.2e-08 Score=87.64 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ 257 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 257 (333)
.+.+.|+|+.|+|||+|++.+++...... ....|+.+... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQ--RTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 34789999999999999999998865332 23445544210 00000 1111222 3
Q ss_pred ceEEEEeCCCCc---hhhhh----ccCCCCCCCcEEEEeeCCh----------HHHhhcccce-EecCCCCHHHHHHHHH
Q 046889 258 RVLVILDDLWVQ---IELDR----VGIPYGNDGCKFLLTSRSR----------AACNQMQAHI-VDVRTLTEEESWRSAE 319 (333)
Q Consensus 258 ~~LlVlDdv~~~---~~~~~----l~~~~~~~g~~vivTTr~~----------~v~~~~~~~~-~~l~~L~~~e~~~lf~ 319 (333)
..+|+|||+|.. ..|.. +.-.....|+.+|++|++. .+..++.... +.++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 459999999863 23332 1111223356665554443 4455555444 8999999999999999
Q ss_pred hhcccC
Q 046889 320 GKRRVC 325 (333)
Q Consensus 320 ~~a~~~ 325 (333)
+.++..
T Consensus 172 ~~a~~~ 177 (229)
T PRK06893 172 RNAYQR 177 (229)
T ss_pred HHHHHc
Confidence 988643
No 28
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.94 E-value=2.2e-09 Score=88.04 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=78.5
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hc---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KK---MFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL- 238 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~- 238 (333)
++.+...+..++ +++|+|+||+|||||++.+...... .. .+.......+.+ .+.++.+++...
T Consensus 11 l~~isl~i~~G~--~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~ 80 (176)
T cd03238 11 LQNLDVSIPLNV--LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLT 80 (176)
T ss_pred ecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccc
Confidence 344444555667 9999999999999999998632110 00 010101112222 356677776421
Q ss_pred CC-----CC-HHHHHHHHHHHHccC--ceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 239 PD-----ND-ELVRASLLCKRIEKQ--RVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 239 ~~-----~~-~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
.. .+ .+.....+.+.+..+ +-+++||++.+..+.. .........|..||++||+.+... .+++.+
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~ 159 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWII 159 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE
Confidence 11 12 244556678888888 8999999998764422 221222224778999999998864 455555
Q ss_pred ecC
Q 046889 305 DVR 307 (333)
Q Consensus 305 ~l~ 307 (333)
.+.
T Consensus 160 ~l~ 162 (176)
T cd03238 160 DFG 162 (176)
T ss_pred EEC
Confidence 554
No 29
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.93 E-value=8.2e-10 Score=100.29 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CC----------eEEEEEeCCCC----
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FD----------EVAMAVVSQTP---- 220 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~----------~~~wv~v~~~~---- 220 (333)
.+|....++.+...+..|+ +++|+|+||+|||||++.+.+...+... +. .....++++.+
T Consensus 50 ~y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 50 SYGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL 127 (340)
T ss_pred EECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence 3454456777777777787 9999999999999999999987643221 00 00112233321
Q ss_pred --CHHH------------------HHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889 221 --SITK------------------IQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE--- 271 (333)
Q Consensus 221 --~~~~------------------~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 271 (333)
+..+ ....+++.+++...... + .+...-.+...|..++-+++||++.+..|
T Consensus 128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 1111 12234555555422111 1 23445678888889999999999987644
Q ss_pred ---hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 272 ---LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 ---~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+.......|..||++||+.+.+..++++.+
T Consensus 208 r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~ 243 (340)
T PRK13536 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC 243 (340)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 222222233347889999999998887777663
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.93 E-value=7.8e-09 Score=91.14 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred ccccccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 155 GFYNFKSRESTMK---DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 155 ~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
...+++|.+..+. -|...+..+++.-+.+|||.|+||||||+.+....+... ..++..+-...-..-++.|.+
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 3445666554432 233444578888999999999999999999998766433 446666655443344444444
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChHH----Hhhcccce
Q 046889 232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRAA----CNQMQAHI 303 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~v----~~~~~~~~ 303 (333)
+-.. ...+..++-+|.+|++..- .+-+. .+|...+|..++| ||.|+.+ +..-...+
T Consensus 212 ~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~-fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 212 QAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDT-FLPHVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred HHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhc-ccceeccCceEEEecccCCCccchhHHHHhccce
Confidence 3221 1234467889999999643 33333 4788888886666 8888876 22122334
Q ss_pred EecCCCCHHHHHHHHHhhc
Q 046889 304 VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~a 322 (333)
+.|+.|+.++...++.+..
T Consensus 276 fvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred eEeccCCHHHHHHHHHHHH
Confidence 8999999999888888743
No 31
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.2e-09 Score=87.46 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hc---CCC--------------eEEEEEeCCCC---
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KK---MFD--------------EVAMAVVSQTP--- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~---~f~--------------~~~wv~v~~~~--- 220 (333)
.+.++.+...+..++ +-+|.||||+|||||+..+.++..- .. -|+ .-+++..-.+.
T Consensus 17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 467777777777788 8999999999999999999977631 10 011 11111111111
Q ss_pred --CH---------------------HHHHHHHHHHhCCCC-CCC-------CCHHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889 221 --SI---------------------TKIQDEIAGWLGIKE-LPD-------NDELVRASLLCKRIEKQRVLVILDDLWVQ 269 (333)
Q Consensus 221 --~~---------------------~~~~~~i~~~l~~~~-~~~-------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (333)
+. ...++..++.++.++ ... +.-+..+..+.+.+.-++-|.|||++.+.
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSG 174 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcC
Confidence 11 223334444455431 000 11244567788888899999999999998
Q ss_pred hhhhhcc------CCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 270 IELDRVG------IPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 270 ~~~~~l~------~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
.|.+.+. -.+.+.|+.++++||...+++.+....
T Consensus 175 LDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 175 LDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred ccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 8776662 223455888999999999998886544
No 32
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=1.2e-09 Score=93.38 Aligned_cols=142 Identities=17% Similarity=0.241 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CH-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SI- 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~- 222 (333)
..++.+...+.+++ +++|+|+||+|||||++.+.+...+... |.. ....++++.+ +.
T Consensus 14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 14 EAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EeeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 34556666666777 9999999999999999999976543210 000 0112233332 11
Q ss_pred -----------------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------
Q 046889 223 -----------------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------ 273 (333)
Q Consensus 223 -----------------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------ 273 (333)
......+++.+++.... ..+ .+.....+...+..++-+++||++.+..|..
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 01123445555553211 112 2334556888888899999999998765422
Q ss_pred hccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889 274 RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 274 ~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+...... .|..||++||+.+.+..++++.+.++
T Consensus 172 ~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~ 206 (220)
T cd03265 172 EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID 206 (220)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 22122222 36789999999998877777665553
No 33
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.93 E-value=1.2e-09 Score=92.99 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCCC--------H----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTPS--------I---- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~~--------~---- 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+. .
T Consensus 14 ~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 14 VLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence 4556666666777 9999999999999999999876543211 110 00112222211 0
Q ss_pred ------------------HHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889 223 ------------------TKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------ 272 (333)
Q Consensus 223 ------------------~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------ 272 (333)
......+++.+++.. ....+ -+.....+...+..++-+++||++.+..|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 171 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171 (213)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 112234445555431 11122 234455677888889999999999876442
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
..+.......|..||++||+.+.+..++++.+.+.
T Consensus 172 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~ 206 (213)
T cd03235 172 YELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206 (213)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEc
Confidence 22222222347789999999998877777765554
No 34
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=1.6e-09 Score=92.29 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CHH-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SIT- 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~~- 223 (333)
..++.+...+.+++ +++|+|+||+|||||++.+.+...+... |+ .....++++.+ +..
T Consensus 14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 14 RALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 35566666666777 9999999999999999999976543210 10 00112333332 110
Q ss_pred -----------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889 224 -----------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~ 274 (333)
....++++.+++.... ..+ -+...-.+.+.|..++-+++||++.+..|.. .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE 171 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1123455556553211 112 3344566888888899999999998775422 2
Q ss_pred ccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889 275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+...... .|..||++||+......++++.+.++
T Consensus 172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 205 (213)
T cd03259 172 ELKELQRELGITTIYVTHDQEEALALADRIAVMN 205 (213)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 2222222 37789999999998777777665543
No 35
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.91 E-value=2.8e-09 Score=91.09 Aligned_cols=141 Identities=17% Similarity=0.262 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. .....+++.+ +..
T Consensus 20 il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 20 AVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 4555555566677 8999999999999999999977543211 000 0011222221 111
Q ss_pred -----------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889 224 -----------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~ 274 (333)
....++++.+++..... .+ .+.....+.+.+..++-+++||++.+..| +..
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 11233455555531111 11 23345568888888999999999987644 222
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+.......|..||++||+...+..++++.+.+.
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 210 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLH 210 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 222223347789999999998777777665443
No 36
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.91 E-value=2.1e-09 Score=91.32 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~ 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+ +.
T Consensus 16 il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 16 ALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 4555555566677 9999999999999999999976543210 000 0011222221 11
Q ss_pred H------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889 223 T------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------ 272 (333)
Q Consensus 223 ~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------ 272 (333)
. .....+++.+++... ...+ -+...-.+.+.+..++-+++||++.+..|.
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 112234555555311 1122 344556688888889999999999877442
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+...+..++++.+.+
T Consensus 174 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 207 (211)
T cd03225 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL 207 (211)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2222222233778999999999888777766554
No 37
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.90 E-value=2.2e-09 Score=88.89 Aligned_cols=137 Identities=15% Similarity=0.276 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE---eCCCCCHHH------HHHHHHHHhCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV---VSQTPSITK------IQDEIAGWLGI 235 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~~~~~~------~~~~i~~~l~~ 235 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+. ...+++. +.. .+... ...++++.+++
T Consensus 14 ~l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl 87 (180)
T cd03214 14 VLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLAS-LSPKELARKIAYVPQALELLGL 87 (180)
T ss_pred eEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCC
Confidence 3444444455667 99999999999999999999876432 2233321 111 11111 12225666665
Q ss_pred CCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCC-CcEEEEeeCChHHHhhcccc
Q 046889 236 KEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGND-GCKFLLTSRSRAACNQMQAH 302 (333)
Q Consensus 236 ~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~-g~~vivTTr~~~v~~~~~~~ 302 (333)
... ...+ .+...-.+.+.+..++-+++||++.+..|.. .+....... |+.||++||+......++++
T Consensus 88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 421 1122 3445667888888999999999998764422 222222233 67899999999987777776
Q ss_pred eEecC
Q 046889 303 IVDVR 307 (333)
Q Consensus 303 ~~~l~ 307 (333)
.+.+.
T Consensus 168 ~~~l~ 172 (180)
T cd03214 168 VILLK 172 (180)
T ss_pred EEEEE
Confidence 65443
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=1e-09 Score=93.18 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=82.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------eEEEEEeCCCC------CHH----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------EVAMAVVSQTP------SIT---- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------~~~wv~v~~~~------~~~---- 223 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+ +..
T Consensus 15 ~l~~v~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 15 ALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence 3444444455677 9999999999999999999976542210 00 00111223221 111
Q ss_pred --------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889 224 --------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI 277 (333)
Q Consensus 224 --------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~ 277 (333)
....++++.+++.... ..+ -+.....+...+..++-+++||++.+..|.. .+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~ 172 (210)
T cd03269 93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR 172 (210)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 1123345555553111 112 2334456788888889999999998764422 2222
Q ss_pred CCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 278 PYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 278 ~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.....|..||++||+...+..++++.+.+.
T Consensus 173 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 202 (210)
T cd03269 173 ELARAGKTVILSTHQMELVEELCDRVLLLN 202 (210)
T ss_pred HHHHCCCEEEEECCCHHHHHHhhhEEEEEe
Confidence 222347789999999998777666665443
No 39
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.89 E-value=7.3e-10 Score=99.33 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=97.6
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEE----------EEeCCCC---
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAM----------AVVSQTP--- 220 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~w----------v~v~~~~--- 220 (333)
...||....++++...+..++ ++++.||+|+|||||++.|.+...+.+. ++...+ -.|.|++
T Consensus 12 ~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccC
Confidence 445666667777887787888 9999999999999999999977655431 000000 0111111
Q ss_pred -------------------C---HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -------------------S---ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -------------------~---~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
. ......++++.+++....... -+++...+.+.|..++-+|+||++-+..|.
T Consensus 90 PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~ 169 (352)
T COG3842 90 PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169 (352)
T ss_pred CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhH
Confidence 1 223455666666665433332 344566799999999999999999877441
Q ss_pred h-------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D-------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~-------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+ .+.-.....|..+|..||+..-|..++++...|
T Consensus 170 kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm 210 (352)
T COG3842 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVM 210 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEc
Confidence 1 111122344889999999999999998887433
No 40
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.89 E-value=4.6e-09 Score=91.88 Aligned_cols=141 Identities=12% Similarity=0.188 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-------EEEEeCCCC------CH--
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-------AMAVVSQTP------SI-- 222 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-------~wv~v~~~~------~~-- 222 (333)
+....++.+...+..++ +++|+|++|+|||||++.+.+...+... |+.. ...++.+.+ ++
T Consensus 23 ~~~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred CCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHH
Confidence 43446666766666777 9999999999999999999977543211 1100 011222221 11
Q ss_pred ----------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC-
Q 046889 223 ----------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY- 279 (333)
Q Consensus 223 ----------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~- 279 (333)
......+++.+++.... ..+ .+.....+...|..++-+++||++.+..|.. .+....
T Consensus 101 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 180 (257)
T PRK11247 101 NVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180 (257)
T ss_pred HHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 11233455666654211 112 2344566888888899999999998775422 221222
Q ss_pred CCCCcEEEEeeCChHHHhhcccce
Q 046889 280 GNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 280 ~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
...|..||++||+...+..++++.
T Consensus 181 ~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 181 QQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEE
Confidence 223678999999998766655554
No 41
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.89 E-value=3.8e-09 Score=89.97 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~ 223 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ ...+ +.+.+ +..
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~--~~q~~~~~~~~t~~ 100 (214)
T PRK13543 25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY--LGHLPGLKADLSTL 100 (214)
T ss_pred eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE--eecCcccccCCcHH
Confidence 45666666677777 8999999999999999999977543211 11 0112 22221 111
Q ss_pred ---------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hcc
Q 046889 224 ---------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVG 276 (333)
Q Consensus 224 ---------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~ 276 (333)
.....++..+++...... + .+.....+.+.+..++-+++||++.+..|.. .+.
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (214)
T PRK13543 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180 (214)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 122344555554321111 1 2344566788888889999999998775422 222
Q ss_pred CCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 277 IPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 277 ~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
......|..||++||+...+..++++.+.+
T Consensus 181 ~~~~~~~~tiii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 181 SAHLRGGGAALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHhCCCEEEEEecChhhhhhhcceEEEE
Confidence 222334678999999999888877776544
No 42
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.89 E-value=8.8e-09 Score=87.86 Aligned_cols=141 Identities=13% Similarity=0.211 Sum_probs=85.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+
T Consensus 18 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 18 ALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 4455555566777 9999999999999999999876543110 000 0011222221
Q ss_pred CHH------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 221 SIT------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 221 ~~~------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
+.. ....++++.+++..... .+ -+.....+.+.|..++-+++||++.+..|..
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 111 11233455555532111 12 3445567888888999999999998775422
Q ss_pred ---hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.......|..||++||+.+.+..++++.+.+.
T Consensus 176 ~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 176 DIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 2222222347789999999998877777665553
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.89 E-value=9e-09 Score=80.36 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIE 255 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 255 (333)
+.+.|+|+.|+|||++++.+........ .-...+|+.++...+...+.+.++..++.......+...+...+.+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 4889999999999999999998764311 1234568888877789999999999999865555667778888888888
Q ss_pred cCce-EEEEeCCCCc-h--hhhhccCCCCCCCcEEEEeeCC
Q 046889 256 KQRV-LVILDDLWVQ-I--ELDRVGIPYGNDGCKFLLTSRS 292 (333)
Q Consensus 256 ~k~~-LlVlDdv~~~-~--~~~~l~~~~~~~g~~vivTTr~ 292 (333)
..+. +||+||+... . .++.+..-....+.+||++.+.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 8665 9999998654 1 2233311122456777777654
No 44
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.89 E-value=2.6e-09 Score=92.43 Aligned_cols=142 Identities=20% Similarity=0.258 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C------------CeEEEEEeC-CCC------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F------------DEVAMAVVS-QTP------ 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f------------~~~~wv~v~-~~~------ 220 (333)
...++.+...+.+++ +++|+|+||+|||||++.+.+...+... + ...+. ++. +..
T Consensus 34 ~~il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~~~ 110 (236)
T cd03267 34 VEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-VVFGQKTQLWWDL 110 (236)
T ss_pred eeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEE-EEcCCccccCCCC
Confidence 345566666666777 9999999999999999999976543210 0 00111 122 211
Q ss_pred CHHH------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 221 SITK------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 221 ~~~~------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
+..+ ....+++.+++..... .+ .+.....+...+..++-+++||++.+..|
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 1111 1123344444431111 12 23345568888888999999999987754
Q ss_pred -hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 272 -LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 -~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+..... ..|..||++||+.+.+..++++.+.+.
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 222222222 236789999999998877777765553
No 45
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.88 E-value=2.6e-09 Score=90.91 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C--eEEEEEeCCCC------CHH-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D--EVAMAVVSQTP------SIT- 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~--~~~wv~v~~~~------~~~- 223 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... + . ......+++.+ +..
T Consensus 14 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 14 TALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 34555555566777 8999999999999999999987543210 0 0 00122233321 111
Q ss_pred -----------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889 224 -----------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~ 274 (333)
.....+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|.. .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 112334555555311 1122 2344556888888899999999998775422 2
Q ss_pred ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+...... .|..||++||+...+..++++.+.+
T Consensus 172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 204 (213)
T cd03301 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM 204 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 2222222 3778999999998877776666444
No 46
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.88 E-value=2.7e-09 Score=92.09 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~~ 222 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... +. .....++++.+ +.
T Consensus 15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 15 VVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred eeccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 5566666666777 9999999999999999999876543210 00 00012223322 11
Q ss_pred H------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-----
Q 046889 223 T------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----- 273 (333)
Q Consensus 223 ~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----- 273 (333)
. .....+++.+++.... ..+ .+...-.+...+..++-+++||++.+..|..
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 1 1122344455543211 111 2344556888888899999999998765422
Q ss_pred -hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 -RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 -~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.......|..||++||+.+.+..++++.+.+
T Consensus 173 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 206 (232)
T cd03218 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 222222234778999999998777777766444
No 47
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=3.9e-09 Score=91.18 Aligned_cols=145 Identities=16% Similarity=0.264 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCeEEEEEeCCCC-----------------
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDEVAMAVVSQTP----------------- 220 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~----------------- 220 (333)
|+-..++++...+.+++ ++++.||+|+|||||++.|.+-..++. .|....|..+++-.
T Consensus 13 ~~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 33334445565666788 999999999999999999998765543 23444444433310
Q ss_pred ----------------------CHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889 221 ----------------------SITKIQDEIAGWLGIKELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIE- 271 (333)
Q Consensus 221 ----------------------~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 271 (333)
....-..+++..+.+...... ..+...-.+.+.|.-.+-+|+||++....|
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa 170 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence 111222333444444322211 233445678888889999999999987643
Q ss_pred -----hhhccCCCCCC-CcEEEEeeCChHHHhhcccceEecC
Q 046889 272 -----LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 -----~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+......+... |...+++|||.+.+..++++...|+
T Consensus 171 ~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred HHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec
Confidence 33333333333 8889999999999888888775544
No 48
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=3.8e-09 Score=92.40 Aligned_cols=140 Identities=17% Similarity=0.259 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCC------CHH-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTP------SIT----- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~------~~~----- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+..++... |+. ....++.+.+ ++.
T Consensus 16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~ 93 (255)
T PRK11248 16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF 93 (255)
T ss_pred eEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHh
Confidence 4555555566777 9999999999999999999977543211 100 0011223321 111
Q ss_pred -------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCC
Q 046889 224 -------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIP 278 (333)
Q Consensus 224 -------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~ 278 (333)
.....+++.+++..... .+ .+.....+...+..++-+++||++.+..|. ..+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 94 GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11234455555532111 12 234455678888889999999999876442 222222
Q ss_pred C-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 279 Y-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 279 ~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ...|..||++||+.+.+..++++.+.|
T Consensus 174 ~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 174 LWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2 223778999999999877777666444
No 49
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.87 E-value=1.3e-08 Score=88.48 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC------CHHHH--------------HHHHHHHhCCC
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP------SITKI--------------QDEIAGWLGIK 236 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~------~~~~~--------------~~~i~~~l~~~ 236 (333)
+++|+|+||+|||||++.+.+...+... ++.....++++.. +..+. ...+++.+++.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~ 106 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE 106 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCH
Confidence 8999999999999999999987654321 1111112222221 11111 23345555553
Q ss_pred CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889 237 EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 237 ~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
.. ...+ -+.....+...|..++-+++||++.+..|... +..... ..|..||++||+...+..+++..
T Consensus 107 ~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i 186 (246)
T cd03237 107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186 (246)
T ss_pred HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 11 1122 33445668888899999999999987755322 222222 23778999999999888777766
Q ss_pred EecC
Q 046889 304 VDVR 307 (333)
Q Consensus 304 ~~l~ 307 (333)
+.+.
T Consensus 187 ~~l~ 190 (246)
T cd03237 187 IVFE 190 (246)
T ss_pred EEEc
Confidence 4443
No 50
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.87 E-value=2.8e-09 Score=91.37 Aligned_cols=140 Identities=18% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------eEEEEEeCCCC------CHH----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------EVAMAVVSQTP------SIT---- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------~~~wv~v~~~~------~~~---- 223 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++ ......+++.+ +..
T Consensus 15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 15 AVNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 3444444455677 9999999999999999999976543211 00 01122233322 111
Q ss_pred ----------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCC
Q 046889 224 ----------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGN 281 (333)
Q Consensus 224 ----------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~ 281 (333)
.....+++.+++..... .+ .+.....+...+..++-+++||++.+..|.. .+......
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 172 (223)
T TIGR03740 93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172 (223)
T ss_pred HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH
Confidence 12234455555532111 12 2334456788888899999999998775422 22222233
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|..||++||+...+..++++.+.+
T Consensus 173 ~~~tiii~sH~~~~~~~~~d~i~~l 197 (223)
T TIGR03740 173 QGITVILSSHILSEVQQLADHIGII 197 (223)
T ss_pred CCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 4778999999999877766665433
No 51
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.87 E-value=2.9e-09 Score=89.05 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=95.4
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE-------------eCCCC---
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV-------------VSQTP--- 220 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-------------v~~~~--- 220 (333)
...+|-...+++|...+.+++ +.+++|+||+||||..+.+.+-..+.. ..+.|-- .++..
T Consensus 9 tK~Fg~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~--G~I~~~g~~~~~~~~~rIGyLPEERGLy 84 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTE--GEITWNGGPLSQEIKNRIGYLPEERGLY 84 (300)
T ss_pred hhccCceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccC--ceEEEcCcchhhhhhhhcccChhhhccC
Confidence 345666677778888777788 999999999999999999998876432 1222321 11110
Q ss_pred ---C------------------HHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHHccCceEEEEeCCCCchh--
Q 046889 221 ---S------------------ITKIQDEIAGWLGIKELPDNDELV------RASLLCKRIEKQRVLVILDDLWVQIE-- 271 (333)
Q Consensus 221 ---~------------------~~~~~~~i~~~l~~~~~~~~~~~~------~~~~l~~~l~~k~~LlVlDdv~~~~~-- 271 (333)
. ...-+...++++.+.........+ +...+...+-.++-|+|||++.+..|
T Consensus 85 ~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV 164 (300)
T COG4152 85 PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 (300)
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence 1 122344556666665443333333 33345566667899999998876543
Q ss_pred ----hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 272 ----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 ----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
++...+...+.|..||+.||..+-++.+|++.
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 56666667788999999999988777666654
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.7e-09 Score=91.33 Aligned_cols=141 Identities=15% Similarity=0.257 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCC------CHH-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTP------SIT----- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~------~~~----- 223 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+ +..
T Consensus 19 il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 19 ALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred EEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 4455555566677 9999999999999999999987543211 100 0112223321 111
Q ss_pred -------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889 224 -------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP 278 (333)
Q Consensus 224 -------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~ 278 (333)
.....+++.+++... ...+ -+.....+.+.+..++-+++||++.+..|.. .+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 112334555555311 1122 3345567888888899999999998775422 22222
Q ss_pred C-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 279 Y-GNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 279 ~-~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
. ...|..||++||+......++++.+.|+
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 177 IWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred HHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 2 2236789999999997777767665553
No 53
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.87 E-value=2.8e-09 Score=95.70 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CH
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SI 222 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~ 222 (333)
...++.+...+..|+ +++|+|+||+|||||++.+.+...+... +. .....++++.+ +.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 17 KVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred eEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 345666766677787 9999999999999999999976543210 00 00112233322 11
Q ss_pred HH------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889 223 TK------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L 272 (333)
Q Consensus 223 ~~------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~ 272 (333)
.+ ....+++.+++..... .+ .+...-.+...|..++-+++||++.+..| +
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 11 1123344455432111 11 23345568888888999999999987744 2
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
..+.......|..||++||+...+..++++.+
T Consensus 175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~ 206 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLC 206 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 22222223347789999999998877766653
No 54
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=1.9e-09 Score=92.25 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ-----TPSITKIQDEIAGWLGIKE- 237 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~- 237 (333)
..++++...+..++ +++|+|.+|+|||||++.+..-.++.. ..+++.-.+ .....+...+++..+++..
T Consensus 27 ~avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 27 KAVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKLSKEERRERVLELLEKVGLPEE 101 (268)
T ss_pred EEecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHH
Confidence 34556666666777 999999999999999999998876432 223322111 1123345667777777641
Q ss_pred ------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889 238 ------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 238 ------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
..-...+...-.+.+.|.-++-++|.|++.+..+. ..+...+. ..|-..++.||+..++..+++..
T Consensus 102 ~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 102 FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccE
Confidence 12223445567799999999999999999877542 12211122 22778999999999999988876
No 55
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.86 E-value=2.2e-09 Score=91.65 Aligned_cols=140 Identities=12% Similarity=0.247 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... |+ ......+++.+
T Consensus 19 il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 19 ALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred EEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 4555555566777 9999999999999999999877543210 00 00112222221
Q ss_pred -CH------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 221 -SI------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 221 -~~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
+. ......+++.+++..... .+ -+.....+.+.+..++-+++||++.+..|
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 11 112334556666542111 12 23445568888888999999999987644
Q ss_pred --hhhccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889 272 --LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 --~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+...... .|..||++||+...+. ++++.+.|+
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~ 214 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR 214 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee
Confidence 2222222223 3778999999998876 666655553
No 56
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=2.2e-08 Score=93.70 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=88.3
Q ss_pred ccccccccchHHHHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKD---IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
|.....++|++..+.. |...+..+....+.|+||.|+||||||+.+.+... .. |+.++....-...++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHH
Confidence 4455678898888666 77877777777889999999999999999988653 22 33332221111112222
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHH-HccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChHH--Hhhccc-
Q 046889 230 AGWLGIKELPDNDELVRASLLCKR-IEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRAA--CNQMQA- 301 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~v--~~~~~~- 301 (333)
++. .... ..+++.+|++||++.. ...+.+ ++.-..|..+++ ||.+... ...+..
T Consensus 81 i~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 81 IEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhcc
Confidence 221 1111 1357789999999865 233333 232233554444 3455432 111222
Q ss_pred -ceEecCCCCHHHHHHHHHhhc
Q 046889 302 -HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 302 -~~~~l~~L~~~e~~~lf~~~a 322 (333)
..+.+.+++.++.+.++.+..
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHH
Confidence 338999999999999998864
No 57
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=3.2e-09 Score=93.65 Aligned_cols=140 Identities=13% Similarity=0.202 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+
T Consensus 39 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 39 GVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred EeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 4455555556677 9999999999999999999977543210 00 00112223321
Q ss_pred -CHH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 -SIT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
+.. .....+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|..
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 111 112334555555311 1222 3444566888888999999999998775422
Q ss_pred ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+.+..+++..+.|
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM 234 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 2222222 23778999999998877766666433
No 58
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=1.9e-09 Score=93.18 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... ++. ....++++.+
T Consensus 15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 15 VLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 4455555566777 9999999999999999999976543210 000 0011223321
Q ss_pred CHH-------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 SIT-------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 ~~~-------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
+.. .....+++.+++..... .+ .+.....+.+.+..++-+++||++.+..|..
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 172 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 111 11223455555532211 12 2344566888888899999999998775422
Q ss_pred ----hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|..||++||+.+.+..++++.+.|
T Consensus 173 ~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 22222222 3778999999999877777766444
No 59
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.85 E-value=6.3e-09 Score=88.64 Aligned_cols=142 Identities=13% Similarity=0.197 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC-----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP----- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~----- 220 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+
T Consensus 16 ~il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 16 AALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 35566666667777 9999999999999999999876532110 000 0011223221
Q ss_pred -CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 -SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
+.. .....+++.+++.... ..+ .+.....+.+.|..++-+++||++.+..|..
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 111 1123445555553211 112 2344567888888899999999998775422
Q ss_pred ----hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.......|..||++||+......++++.+.+.
T Consensus 174 ~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec
Confidence 2222222347789999999998877777665543
No 60
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=2.7e-09 Score=87.77 Aligned_cols=129 Identities=19% Similarity=0.297 Sum_probs=79.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-----------------EeCCCCCH---HH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-----------------VVSQTPSI---TK 224 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~~~~~---~~ 224 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+. ...+++ ++++.+.. ..
T Consensus 15 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 15 ALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 3445555556677 99999999999999999998865421 122221 12222110 01
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhh
Q 046889 225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
+.+.+. -...+...-.+.+.+..++-++++|++.+..|.. .+.......|..||++||+......
T Consensus 90 v~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 90 VRENLK---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 111111 1123344567888899999999999998775422 2222223337789999999998877
Q ss_pred cccceEecC
Q 046889 299 MQAHIVDVR 307 (333)
Q Consensus 299 ~~~~~~~l~ 307 (333)
++++.+.++
T Consensus 161 ~~d~i~~l~ 169 (173)
T cd03230 161 LCDRVAILN 169 (173)
T ss_pred hCCEEEEEe
Confidence 777665543
No 61
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.85 E-value=4.6e-09 Score=91.67 Aligned_cols=141 Identities=11% Similarity=0.181 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------------------eEEEEEeCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------------------EVAMAVVSQTP 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------------------~~~wv~v~~~~ 220 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 35566666666777 8999999999999999999876532110 00 00112222221
Q ss_pred ------CHHH-------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889 221 ------SITK-------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQ 269 (333)
Q Consensus 221 ------~~~~-------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (333)
+..+ ....+++.+++..... .+ .+.....+...+..++-+++||++.+.
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1111 1223444455532111 11 234455688888889999999999877
Q ss_pred hhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 270 IELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 270 ~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|.. .+.......|..||++||+...+..++++.+.+
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217 (250)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 5422 222222334778999999999877766666444
No 62
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.84 E-value=7.8e-10 Score=90.00 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ--TPSITKIQDEIAGWLGIKELPDND 242 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~~~~~ 242 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+. ...+++.-.. ..+.....+ ..++. ...-..
T Consensus 15 vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~ 85 (163)
T cd03216 15 ALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARR---AGIAM-VYQLSV 85 (163)
T ss_pred EEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHh---cCeEE-EEecCH
Confidence 3444445556677 99999999999999999999876432 2333332111 111111111 11111 001222
Q ss_pred HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 243 ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.....+.+.+..++-+++||++.+..|.. .+.......|..||++||+.+....++++.+.+.
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~ 156 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4455667888888999999999998764422 2222223347789999999987777666665443
No 63
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.84 E-value=4.9e-09 Score=88.61 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-----------EEEEeCCCC------CH--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-----------AMAVVSQTP------SI-- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-----------~wv~v~~~~------~~-- 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+.. ....+.+.+ +.
T Consensus 16 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 16 LFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred EEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence 4555555666777 9999999999999999999976543211 1000 001112211 11
Q ss_pred -------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889 223 -------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI 277 (333)
Q Consensus 223 -------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~ 277 (333)
......+++.+++..... .+ .+.....+...+..++-+++||++.+..|.. .+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 173 (204)
T PRK13538 94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173 (204)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 112234555555532111 11 2344566888888899999999998765422 2212
Q ss_pred CCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 278 PYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 278 ~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.....|..||++||+......+....|.+
T Consensus 174 ~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 174 QHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHCCCEEEEEecChhhhccCCceEEec
Confidence 22234678999999999888777655554
No 64
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2e-08 Score=99.04 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCC--------CHH----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTP--------SIT---- 223 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~--------~~~---- 223 (333)
+|....++.+...+..|+ +++|+|+||+|||||++.+.+...+... +. .....++++.. ++.
T Consensus 322 y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLA 399 (638)
T ss_pred eCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHH
Confidence 344456777777777777 9999999999999999999987643221 11 11122333321 110
Q ss_pred --------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCCCC
Q 046889 224 --------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYGND 282 (333)
Q Consensus 224 --------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~~~ 282 (333)
.....++..++... . ...+ .+...-.|...+..++-+|+||++.+..|... +...+ .
T Consensus 400 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~ 477 (638)
T PRK10636 400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E 477 (638)
T ss_pred HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C
Confidence 11234555555531 1 1112 23345568888888999999999998865332 22222 2
Q ss_pred CcEEEEeeCChHHHhhcccceEec
Q 046889 283 GCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
| .||++||+...+..++++.+.+
T Consensus 478 g-tvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 478 G-ALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred C-eEEEEeCCHHHHHHhCCEEEEE
Confidence 4 6999999999988877766433
No 65
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.83 E-value=4e-09 Score=89.45 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C---C-------eEEEEEeCCCCC------HH--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F---D-------EVAMAVVSQTPS------IT-- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f---~-------~~~wv~v~~~~~------~~-- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... + + ......+++.+. ..
T Consensus 15 ~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 15 VLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence 4445555555677 9999999999999999999876432210 0 0 001122333221 11
Q ss_pred ------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889 224 ------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY 279 (333)
Q Consensus 224 ------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~ 279 (333)
.....+++.+++.... ..+ .+...-.+...+..++-+++||++.+..|.. .+....
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 93 LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 1123345555553211 112 2334456788888889999999998775422 222222
Q ss_pred CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 280 GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 280 ~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...|..||++||+...+..++++.+.+
T Consensus 173 ~~~~~tii~~tH~~~~~~~~~d~v~~l 199 (208)
T cd03268 173 RDQGITVLISSHLLSEIQKVADRIGII 199 (208)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 234778999999999887777766544
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=4.8e-09 Score=90.59 Aligned_cols=140 Identities=14% Similarity=0.242 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+ .....++++.+
T Consensus 20 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 20 ALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 4555665666777 9999999999999999999877543211 00 00012223321
Q ss_pred CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 221 SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 221 ~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
+.. .....+++.+++.... ..+ .+.....+...+..++-+++||++.+..|..
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 111 1123345555553211 112 2344566788888899999999998775422
Q ss_pred ---hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ---RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ---~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|..||++||+.+.+..++++.+.+
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 214 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM 214 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222223 3788999999999877777766444
No 67
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.82 E-value=4.3e-09 Score=90.24 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE------------eCCCCCHH-----
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV------------VSQTPSIT----- 223 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~------------v~~~~~~~----- 223 (333)
|....++.+...+..++ +++|+|++|+|||||++.+.+...+.. ..+|+. +....++.
T Consensus 33 ~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~ 107 (224)
T cd03220 33 GEFWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLLGLGGGFNPELTGRENIYL 107 (224)
T ss_pred CCeEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhhcccccCCCCCcHHHHHHH
Confidence 33445555555566677 999999999999999999998654321 111110 00111111
Q ss_pred -------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889 224 -------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP 278 (333)
Q Consensus 224 -------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~ 278 (333)
.....+++.+++.... ..+ .+.....+.+.+..++-+++||++.+..|.. .+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~ 187 (224)
T cd03220 108 NGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE 187 (224)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1123344444543211 112 2334556888888899999999998775432 22222
Q ss_pred CCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 279 YGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 279 ~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....|..||++||+.+.+..++++.+.+
T Consensus 188 ~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 188 LLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2233678999999999887776666444
No 68
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.82 E-value=3.6e-09 Score=90.65 Aligned_cols=141 Identities=14% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-----eEEEEEeCCCC------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-----EVAMAVVSQTP------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-----~~~wv~v~~~~------~~ 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... .. .....++++.+ +.
T Consensus 15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 15 ILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred EeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 4455555556677 9999999999999999999876542210 00 01122333332 11
Q ss_pred H----------------HHHHHHHHHh-CCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 223 T----------------KIQDEIAGWL-GIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 223 ~----------------~~~~~i~~~l-~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
. .....+++.+ +.... ...+ .+.....+.+.+..++-+++||++.+..| +.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 1 0112233333 12111 1111 23345567777888889999999987644 22
Q ss_pred hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 274 RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 274 ~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.......|..||++||+...+..++++.+.+.
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee
Confidence 2222222347889999999998777777665443
No 69
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.82 E-value=2.3e-08 Score=81.54 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCCCH--HHHHHHHHHHhCCCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTPSI--TKIQDEIAGWLGIKEL 238 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~~~--~~~~~~i~~~l~~~~~ 238 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+.. ..+.+++.-. ...
T Consensus 16 ~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~ 90 (166)
T cd03223 16 LLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD 90 (166)
T ss_pred eeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC
Confidence 3444555555677 9999999999999999999987653221 111 112234444322 1223332210 111
Q ss_pred CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 239 PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.-...+..+..+.+.+..++-+++||++.+..|.... .-.+...+..+|++||+..... ++++.+.+
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~-~~d~i~~l 160 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK-FHDRVLDL 160 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh-hCCEEEEE
Confidence 2223455667788888999999999999876542221 0001111567999999988754 55655554
No 70
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.82 E-value=9.9e-09 Score=88.07 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C-------C-------------eEEEEEeCCCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F-------D-------------EVAMAVVSQTPS 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-------~-------------~~~wv~v~~~~~ 221 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... | + ......+++.+.
T Consensus 23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 23 VLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 4555665666777 9999999999999999999877543210 1 0 000112223221
Q ss_pred ------H------------------HHHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 222 ------I------------------TKIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 222 ------~------------------~~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
. .....++++.+++... ...+ .+.....+.+.+..++-+++||++.+..
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 0 1122334555554321 1112 2344556778888888999999998765
Q ss_pred hh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 271 EL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 271 ~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
|. ..+.......|..||++||+...+..+++..+.+.
T Consensus 181 D~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 181 DAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 42 22222223347789999999998877777666554
No 71
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.81 E-value=1.8e-08 Score=82.78 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=76.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC--CCCHHHHHHHHHHHhCCC-CCC--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ--TPSITKIQDEIAGWLGIK-ELP-- 239 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~-~~~-- 239 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+.. ..+++.-.. ........+.+ ..+... ...
T Consensus 17 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~ 90 (173)
T cd03246 17 VLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNELGDHV-GYLPQDDELFSG 90 (173)
T ss_pred ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHHHhhe-EEECCCCccccC
Confidence 3444444455677 999999999999999999998764321 222211000 00111110000 000000 000
Q ss_pred ------CCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 240 ------DNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 240 ------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
-...+...-.+.+.+..++-+++||++.+..|. ..+.......|..||++||+..... .+++.+.+
T Consensus 91 tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l 168 (173)
T cd03246 91 SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVL 168 (173)
T ss_pred cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 112334566788888899999999999876442 2222222334778999999998875 45555544
No 72
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.81 E-value=2.2e-08 Score=85.24 Aligned_cols=141 Identities=13% Similarity=0.208 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+. .....+++.+
T Consensus 16 ~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 16 ALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 4445555555677 9999999999999999999977543210 000 0011222221
Q ss_pred CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 221 SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 221 ~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
+.. ..+..+++.+++.... ..+ .+.....+.+.+..++-+++||++.+..|
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 111 1123445555553211 112 23445568888888999999999987644
Q ss_pred -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+.......|..||++||+......++++.+.++
T Consensus 174 ~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 174 EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 222222223347789999999998877666665543
No 73
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.81 E-value=4.8e-09 Score=91.49 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCCC--------H----------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTPS--------I---------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~~--------~---------- 222 (333)
.++.+...+..++ +++|+|+||+|||||++.+++...+... +.. ....++++.+. .
T Consensus 19 vl~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~ 96 (251)
T PRK09544 19 VLSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGT 96 (251)
T ss_pred EEEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccc
Confidence 3444444455677 9999999999999999999987543221 110 01112222211 1
Q ss_pred -HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCCC-CCcEEEE
Q 046889 223 -TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYGN-DGCKFLL 288 (333)
Q Consensus 223 -~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~~-~g~~viv 288 (333)
..-...+++.+++.... ..+ .+.....+...+..++-+++||++.+..|... +...... .|..||+
T Consensus 97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176 (251)
T ss_pred cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11223445556553211 112 23445568888888999999999987754322 2122222 2778999
Q ss_pred eeCChHHHhhcccceEecC
Q 046889 289 TSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 289 TTr~~~v~~~~~~~~~~l~ 307 (333)
+||+.+.+..++++.+.+.
T Consensus 177 vsH~~~~i~~~~d~i~~l~ 195 (251)
T PRK09544 177 VSHDLHLVMAKTDEVLCLN 195 (251)
T ss_pred EecCHHHHHHhCCEEEEEC
Confidence 9999998877777664443
No 74
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.81 E-value=9.4e-09 Score=87.47 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC------C
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------S 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------~ 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+ +
T Consensus 15 ~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 15 VLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 4455555556677 9999999999999999999976543210 000 0011222221 1
Q ss_pred HH-------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 222 IT-------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 222 ~~-------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
.. .....+++.+++... ...+ .+...-.+.+.+..++-+++||++.+..|.
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 10 112334455554311 1112 334455678888888999999999876442
Q ss_pred --hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
..+.......|..||++||+......++++.+.++
T Consensus 173 ~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 173 EVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 22222222347789999999998877777665543
No 75
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=7.4e-09 Score=102.01 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=88.1
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-EEEEeCCCC-----CH-H------
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-AMAVVSQTP-----SI-T------ 223 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-~wv~v~~~~-----~~-~------ 223 (333)
+|....++.+...+..|+ +++|+|+||+|||||++.+.+...+... +... ...++.+.. .. .
T Consensus 11 ~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~ 88 (638)
T PRK10636 11 RGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD 88 (638)
T ss_pred eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhh
Confidence 454556777777777788 8999999999999999999987543221 1110 011122210 00 0
Q ss_pred --------------------------------------HHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCc
Q 046889 224 --------------------------------------KIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQR 258 (333)
Q Consensus 224 --------------------------------------~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~ 258 (333)
.-...++..+++. .... .+ .+.....|.+.|..++
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P 168 (638)
T PRK10636 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRS 168 (638)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCC
Confidence 0112234444442 1111 11 2344667888888999
Q ss_pred eEEEEeCCCCchhhhhcc---CCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 259 VLVILDDLWVQIELDRVG---IPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 259 ~LlVlDdv~~~~~~~~l~---~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
-+|+||++.+..|..... --+...+..||++||+......++++.+.|.
T Consensus 169 ~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 169 DLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 999999999886533320 0011124569999999999888777765443
No 76
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=5.6e-09 Score=90.51 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=83.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CHH--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SIT-- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~~-- 223 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... ++ .....++++.+ +..
T Consensus 17 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 17 ALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence 4555666666777 9999999999999999999977543210 00 00011222221 111
Q ss_pred --------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889 224 --------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---- 273 (333)
Q Consensus 224 --------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---- 273 (333)
.....+++.+++.... ..+ .+.....+.+.|..++-+++||++.+..|..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (239)
T cd03296 95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174 (239)
T ss_pred HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 1123345555553111 112 3344556788888889999999998775422
Q ss_pred --hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 --RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 --~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|..||++||+.+.+..++++.+.+
T Consensus 175 l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 210 (239)
T cd03296 175 LRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM 210 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222222 3678999999999877766766444
No 77
>PRK10908 cell division protein FtsE; Provisional
Probab=98.80 E-value=5.7e-09 Score=89.42 Aligned_cols=141 Identities=11% Similarity=0.169 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTPS----- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~~----- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |.. ....++++.+.
T Consensus 17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 17 ALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 4455555566777 9999999999999999999876543210 000 01122333221
Q ss_pred -HHH------------------HHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 222 -ITK------------------IQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 222 -~~~------------------~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
..+ -...+++.+++... ...+ -+.....+.+.+..++-+++||++.+..|..
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (222)
T PRK10908 95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 (222)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 100 11234455554321 1112 2344566888888899999999998775422
Q ss_pred ---hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.......|..||++||+.+....++++.+.+.
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2222222336789999999998887777665543
No 78
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.80 E-value=3.5e-09 Score=88.46 Aligned_cols=129 Identities=14% Similarity=0.234 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------------eEEEEEeCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------------EVAMAVVSQTP------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------------~~~wv~v~~~~------- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+ ......+++.+
T Consensus 7 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 7 VLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4555555566777 9999999999999999999876543210 00 00112233332
Q ss_pred CHH------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 221 SIT------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 221 ~~~------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
+.. .....+++.+++..... .+ .+.....+.+.+..++-+++||++.+..|
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 110 01223444455432111 11 23445567888888999999999987644
Q ss_pred -hhhccCCCCCCCcEEEEeeCChHH
Q 046889 272 -LDRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 272 -~~~l~~~~~~~g~~vivTTr~~~v 295 (333)
+..+.......|..||++||+.+.
T Consensus 165 ~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHcCCEEEEEeecccc
Confidence 222222223347789999998653
No 79
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=8.8e-09 Score=90.98 Aligned_cols=141 Identities=15% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCCC-----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTPS----- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~~----- 221 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+... |+. ....++++.+.
T Consensus 15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 45666666666777 9999999999999999999876543210 000 00112233211
Q ss_pred --HHH------------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 222 --ITK------------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 222 --~~~------------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
..+ ....+++.+++.... ..+ .+.....+.+.|..++-+++||++.+..|..
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 110 112234444442111 112 3344566888888999999999998775422
Q ss_pred ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.......|..||++||+.+.+..++++.+.+
T Consensus 173 ~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 222222234778999999999877766665433
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=6.4e-09 Score=91.98 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~ 222 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+..++... ++. ....++.+.+ +.
T Consensus 20 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 97 (274)
T PRK13647 20 ALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97 (274)
T ss_pred eeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence 5556666666777 9999999999999999999976543210 000 0112233322 00
Q ss_pred ------------------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889 223 ------------------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L 272 (333)
Q Consensus 223 ------------------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~ 272 (333)
......+++.+++.... ..+ .+.....+.+.|..++-+++||++.+..| +
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l 177 (274)
T PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 01123444555553211 112 33456678888999999999999987744 2
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
..+.......|..||++||+.+.+..++++.
T Consensus 178 ~~~l~~~~~~g~tili~tH~~~~~~~~~d~i 208 (274)
T PRK13647 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQV 208 (274)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 2222222233788999999999877666665
No 81
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.80 E-value=8.4e-08 Score=75.83 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELP 239 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 239 (333)
.|++..+..+...+.......+.|+|+.|+|||||++.+++..... -...+++...+.......... ....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAEL-FGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHH-hhhh------
Confidence 3677888888888876445589999999999999999999887521 123445544433221111100 0000
Q ss_pred CCCHHHHHHHHHHHHccCceEEEEeCCCCc-----hhhhhccCCCC-----CCCcEEEEeeCChH
Q 046889 240 DNDELVRASLLCKRIEKQRVLVILDDLWVQ-----IELDRVGIPYG-----NDGCKFLLTSRSRA 294 (333)
Q Consensus 240 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~-----~~g~~vivTTr~~~ 294 (333)
............++.++++||++.. ..+........ ..++.+|+||+...
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111122233457789999999853 22222211111 34788888888654
No 82
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=2.4e-09 Score=88.46 Aligned_cols=134 Identities=13% Similarity=0.213 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE--------------------EeCCCCCHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA--------------------VVSQTPSITK 224 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv--------------------~v~~~~~~~~ 224 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+. ...+.+ .+++.+....
T Consensus 15 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 15 VLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 3444555556677 99999999999999999998765432 222221 1111111000
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCC-CcEEEEeeCChHHHh
Q 046889 225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGND-GCKFLLTSRSRAACN 297 (333)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~-g~~vivTTr~~~v~~ 297 (333)
-..+.+.+.. .-..-+.....+...+..++-+++||++.+..|. ..+....... |..+|++||+.....
T Consensus 90 -~~t~~~~l~~---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 90 -HLTVLENIAL---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred -CCCHHHheee---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 0000000000 0112344556688888899999999999876442 2222222333 678999999999887
Q ss_pred hcccceEecC
Q 046889 298 QMQAHIVDVR 307 (333)
Q Consensus 298 ~~~~~~~~l~ 307 (333)
.++++.+.++
T Consensus 166 ~~~d~i~~l~ 175 (178)
T cd03229 166 RLADRVVVLR 175 (178)
T ss_pred HhcCEEEEEe
Confidence 7767665553
No 83
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.79 E-value=4.9e-09 Score=100.89 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=90.5
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC---
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP--- 220 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~--- 220 (333)
++....++.+...+..++ +++|+|+||+|||||++.+.+...+... ++. ....++++.+
T Consensus 21 ~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (510)
T PRK15439 21 YSGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF 98 (510)
T ss_pred eCCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccC
Confidence 344445666776677777 9999999999999999999977543210 110 0112233322
Q ss_pred ---CH--------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----
Q 046889 221 ---SI--------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----- 272 (333)
Q Consensus 221 ---~~--------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----- 272 (333)
+. ......++..+++...... + .+.....|...|..++-+++||++.+..|.
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~ 178 (510)
T PRK15439 99 PNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER 178 (510)
T ss_pred CCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 11 1223455666776432222 2 244566788888899999999999877542
Q ss_pred -hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 -DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 -~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+.+.+..++++.+.+
T Consensus 179 l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 179 LFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2222222334778999999998877766665333
No 84
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.79 E-value=1.2e-08 Score=87.38 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~ 223 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. .....+.+.+ +..
T Consensus 16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 16 PAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 35566666666777 9999999999999999999976543211 000 0011222221 111
Q ss_pred ------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------
Q 046889 224 ------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------ 273 (333)
Q Consensus 224 ------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------ 273 (333)
....++++.+++.... ..+ .+.....+...+..++-+++||++.+..|..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 1123345555553211 112 2334556788888899999999998764422
Q ss_pred hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... +..||++||+.+.+..+++..+.+
T Consensus 174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 174 DLILEVRK-GRSIILTTHSMDEAEALCDRIAIM 205 (220)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEE
Confidence 22222222 467999999999887776766444
No 85
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.79 E-value=9.3e-09 Score=88.97 Aligned_cols=140 Identities=19% Similarity=0.314 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~~ 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+ ++
T Consensus 15 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 15 ALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EecCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 4555555566777 9999999999999999999876532210 00 00011222321 11
Q ss_pred H----------------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 223 T----------------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 223 ~----------------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
. ....++++.+++...... + .+.....+.+.+..++-+++||++.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 172 (236)
T cd03219 93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172 (236)
T ss_pred HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1 112334455555321111 1 23345567788888999999999987
Q ss_pred chhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|.. .+.......|..||++||+.+.+..++++.+.+
T Consensus 173 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 173 GLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 75422 222222224778999999999887777776544
No 86
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.79 E-value=2.3e-08 Score=79.57 Aligned_cols=119 Identities=21% Similarity=0.258 Sum_probs=72.4
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRAS 248 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 248 (333)
+...+.+++ +++|+|++|+|||||++.+.+...+. ...+++.-. ..++.-. .-...+....
T Consensus 19 ~~~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv 79 (144)
T cd03221 19 ISLTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST-------------VKIGYFE-QLSGGEKMRL 79 (144)
T ss_pred eEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe-------------EEEEEEc-cCCHHHHHHH
Confidence 333344566 99999999999999999998876432 223332100 0000000 0112334455
Q ss_pred HHHHHHccCceEEEEeCCCCchhhhh---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 249 LLCKRIEKQRVLVILDDLWVQIELDR---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.+.+..++-++++|++.+..|... +...+...+..||++||+.+.+..++++.+.+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l 140 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIEL 140 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 67888888999999999986644211 10001111457999999999887776666554
No 87
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.78 E-value=7.2e-09 Score=85.95 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCCC---H---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTPS---I--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~~---~--- 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+. .
T Consensus 15 ~l~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 3444444455666 8999999999999999999977543221 000 01122222210 0
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHH
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAAC 296 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~ 296 (333)
..+.+.+.-... -...+...-.+...+..++-+++||++.+..|.. .+.......|..||++||+....
T Consensus 93 ~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 93 LSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred CcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 112222211000 1122334556888888899999999998764422 22222223477899999999887
Q ss_pred hhcccceEecC
Q 046889 297 NQMQAHIVDVR 307 (333)
Q Consensus 297 ~~~~~~~~~l~ 307 (333)
..++++.+.++
T Consensus 168 ~~~~d~v~~l~ 178 (182)
T cd03215 168 LGLCDRILVMY 178 (182)
T ss_pred HHhCCEEEEec
Confidence 77777665543
No 88
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=1.3e-08 Score=83.57 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE------------------eCCCCCHHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV------------------VSQTPSITKIQ 226 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~------------------v~~~~~~~~~~ 226 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+. ...+++. +.+.+....
T Consensus 17 ~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-- 89 (171)
T cd03228 17 VLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-- 89 (171)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--
Confidence 4555555556677 99999999999999999999876532 1222211 111111000
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcc
Q 046889 227 DEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQ 300 (333)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~ 300 (333)
..+.+.+ -...+...-.+.+.+..++-+++||++.+..| +..+...... +..||++||+.+.... +
T Consensus 90 ~t~~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~ 161 (171)
T cd03228 90 GTIRENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD-A 161 (171)
T ss_pred chHHHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh-C
Confidence 0000000 11123345568888888999999999987644 2222222222 5789999999998766 5
Q ss_pred cceEec
Q 046889 301 AHIVDV 306 (333)
Q Consensus 301 ~~~~~l 306 (333)
++.+.+
T Consensus 162 d~~~~l 167 (171)
T cd03228 162 DRIIVL 167 (171)
T ss_pred CEEEEE
Confidence 555544
No 89
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.78 E-value=1.7e-08 Score=96.78 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-----
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP----- 220 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~----- 220 (333)
+....++.+...+..|+ +++|+|+||+|||||++.+.+...+... +.. .....+.+.+
T Consensus 14 ~~~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (490)
T PRK10938 14 SDTKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDML 91 (490)
T ss_pred CCeeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhc
Confidence 33346677777777788 9999999999999999999976543210 000 0000111110
Q ss_pred ---------CH----------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 221 ---------SI----------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 221 ---------~~----------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
.. ..-...+++.+++... ...+ .+.....+...|..++-+++||++.+..|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 171 (490)
T PRK10938 92 SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171 (490)
T ss_pred ccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 11 1123455666666421 1222 344566788888889999999999877542
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+...+..++++.+.|
T Consensus 172 ~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 172 QQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 2222222334778999999998877777666433
No 90
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.78 E-value=2.8e-08 Score=87.08 Aligned_cols=140 Identities=14% Similarity=0.241 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------------------eEEEEEe
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------------------EVAMAVV 216 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------------------~~~wv~v 216 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+ ...+.++
T Consensus 20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 20 VLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 4455555566677 9999999999999999999977543211 00 0112333
Q ss_pred CCCC------CHH-H------------------HHHHHHHHhCCCCCC------CCC-HHHHHHHHHHHHccCceEEEEe
Q 046889 217 SQTP------SIT-K------------------IQDEIAGWLGIKELP------DND-ELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 217 ~~~~------~~~-~------------------~~~~i~~~l~~~~~~------~~~-~~~~~~~l~~~l~~k~~LlVlD 264 (333)
++.+ +.. . ...++++.+++.... ..+ .+.....+.+.|..++-+++||
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3332 111 1 123445555553211 112 2345567888888899999999
Q ss_pred CCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++.+..|.. .+.......|..||++||+...+..++++.+.+
T Consensus 178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l 225 (257)
T PRK10619 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 225 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 998775422 222222334788999999999888777766444
No 91
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.78 E-value=4.4e-09 Score=96.21 Aligned_cols=140 Identities=12% Similarity=0.217 Sum_probs=86.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--C---CCe----------EEEEEeCCCCC------H-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--M---FDE----------VAMAVVSQTPS------I- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~---f~~----------~~wv~v~~~~~------~- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+.. . |+. +....+.+.+. +
T Consensus 20 ~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~ 97 (362)
T TIGR03258 20 VLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence 4555555556677 999999999999999999998765433 1 110 01122223221 1
Q ss_pred -----------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 223 -----------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 223 -----------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
......+++.+++...... + -+..+-.|.+.|..++-+++||++.+..| +.
T Consensus 98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~ 177 (362)
T TIGR03258 98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177 (362)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 1123445666666432221 2 34456678899999999999999987644 22
Q ss_pred hccCCCC-CC-CcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYG-ND-GCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~-~~-g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....... .. |..+|++||+...+..++++.+.|
T Consensus 178 ~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl 212 (362)
T TIGR03258 178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIM 212 (362)
T ss_pred HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2212222 22 678999999999888777776433
No 92
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.78 E-value=9.9e-09 Score=93.16 Aligned_cols=140 Identities=11% Similarity=0.225 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-------eEEEEEeCCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-------EVAMAVVSQTPS----- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-------~~~wv~v~~~~~----- 221 (333)
.++++...+..++ +++|+|++|+|||||++.+.+..++... +. ......+.+.+.
T Consensus 20 ~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 20 ALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 4556666666777 9999999999999999999977553210 00 001122223221
Q ss_pred -H------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 222 -I------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 222 -~------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
. .....++++.+++.+.... + -+..+..|.+.|..++-+|++|++.+..|.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1 1112345566666432221 1 234566788999999999999999877542
Q ss_pred --hhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 --DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 --~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+..... ..|..||++||+.+++..++++.+.|
T Consensus 178 ~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222222 23788999999999988777766433
No 93
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.9e-09 Score=84.92 Aligned_cols=129 Identities=21% Similarity=0.250 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE----------------EeCCCCC------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA----------------VVSQTPS------ 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------~v~~~~~------ 221 (333)
..+..|...+.+++ .+-|.|+||+|||||.|.+.+-.++.. ..+.|- ++++.+.
T Consensus 16 ~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~--G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 16 TLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDA--GEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCC--CeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 34556666677788 899999999999999999998765432 112221 0111110
Q ss_pred ---------------HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889 222 ---------------ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR 274 (333)
Q Consensus 222 ---------------~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~ 274 (333)
...-+.+.+..+++.+..+.+ -++.+..+.+.+-.++-|-+||++....| +..
T Consensus 92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~ 171 (209)
T COG4133 92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171 (209)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence 012233445556655443333 34456678888899999999999987644 444
Q ss_pred ccCCCCCCCcEEEEeeCChHHH
Q 046889 275 VGIPYGNDGCKFLLTSRSRAAC 296 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~ 296 (333)
+.......|..||.|||.+-..
T Consensus 172 l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 172 LMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHhcCCCEEEEecCCccCC
Confidence 4445566688899999987653
No 94
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=9.5e-09 Score=99.44 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC------CH-----------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP------SI----------- 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~------~~----------- 222 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+... |+. ....++++.+ +.
T Consensus 15 ~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 15 PLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred EeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence 35566666666777 9999999999999999999987543211 111 1111223321 10
Q ss_pred ---------------------------------------HHHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHcc
Q 046889 223 ---------------------------------------TKIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEK 256 (333)
Q Consensus 223 ---------------------------------------~~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~ 256 (333)
......+++.+++... ...+ .+.....+...|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 0112344555555321 1112 34456678888888
Q ss_pred CceEEEEeCCCCchhhhhc---cCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889 257 QRVLVILDDLWVQIELDRV---GIPYGNDGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 257 k~~LlVlDdv~~~~~~~~l---~~~~~~~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
++-+++||++.+..|.... .-.+...|..||++||+...+..++++.+.
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEE
Confidence 9999999999877542221 000123467899999999988777766633
No 95
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.78 E-value=9.5e-09 Score=89.14 Aligned_cols=140 Identities=15% Similarity=0.253 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC------C
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------S 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------~ 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+ +
T Consensus 16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 16 VLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 4555555566777 9999999999999999999976543210 000 0011222221 1
Q ss_pred HH-------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 222 IT-------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 222 ~~-------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
.. ....++++.+++... ...+ .+.....+.+.+..++-+++||++.+..|..
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 173 (240)
T PRK09493 94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173 (240)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 10 112234455554311 1112 2334556778888889999999998764422
Q ss_pred ---hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.......|..||++||+.+.+..++++.+.+
T Consensus 174 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 222222334778999999999887777766444
No 96
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1e-08 Score=89.01 Aligned_cols=141 Identities=11% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------------EEEEEeCCCC--
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------------VAMAVVSQTP-- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------------~~wv~v~~~~-- 220 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+
T Consensus 16 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 16 QALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 34555555666777 9999999999999999999977543211 000 0012233322
Q ss_pred ----CHHH-------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 221 ----SITK-------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 221 ----~~~~-------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
+..+ ....+++.+++..... .+ .+.....+.+.+..++-+++||++.+..|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 1111 1223344455432111 12 23445567888888899999999987754
Q ss_pred hh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 LD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.. .+.......|..||++||+......++++.+.+
T Consensus 174 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 174 PEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 22 221222334778999999999877666655444
No 97
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=7.4e-09 Score=89.87 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------------CCeEEEEEeCCCC------C
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------------FDEVAMAVVSQTP------S 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------------f~~~~wv~v~~~~------~ 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... +...+ ..+++.+ +
T Consensus 18 ~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t 94 (241)
T PRK10895 18 VVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI-GYLPQEASIFRRLS 94 (241)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe-EEeccCCcccccCc
Confidence 4555565566777 9999999999999999999976543210 00011 1222221 1
Q ss_pred H-------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 222 I-------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 222 ~-------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
. .....++++.+++... ...+ .+.....+...+..++-+++||++.+..|.
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 1 1122334444444311 1112 233455678888889999999999876442
Q ss_pred --hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+.+....++++.+.+
T Consensus 175 ~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l 210 (241)
T PRK10895 175 DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIV 210 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 2221222334778999999998766666665433
No 98
>PF13173 AAA_14: AAA domain
Probab=98.77 E-value=3e-08 Score=77.28 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
+++.|.|+-|+|||||++.++.... .....+++............ .+ ....+.+....+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 4899999999999999999987764 22334455433321110000 00 1222333344478
Q ss_pred eEEEEeCCCCchhhhhccCCCCC--CCcEEEEeeCChHHHhh-----cccce--EecCCCCHHHH
Q 046889 259 VLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQ-----MQAHI--VDVRTLTEEES 314 (333)
Q Consensus 259 ~LlVlDdv~~~~~~~~l~~~~~~--~g~~vivTTr~~~v~~~-----~~~~~--~~l~~L~~~e~ 314 (333)
.+++||++....+|....-.+.+ ...+|++|+.+...... +..+. ++|.||+-.|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999888776665332222 35789999998776422 22222 89999998764
No 99
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.77 E-value=1.3e-08 Score=88.06 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=61.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCHHH-----HH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT--PSITKIQDEIAGWLGIKELPDNDELV-----RA 247 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~ 247 (333)
.++ .++|+|++|+|||||++.+++..... +|+..+|+++.+. .++.++++.+...+-........... ..
T Consensus 15 ~Gq--r~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQ--RGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 355 89999999999999999999988754 8999999997766 67888888873222211111111111 11
Q ss_pred HHHHHH--HccCceEEEEeCCCC
Q 046889 248 SLLCKR--IEKQRVLVILDDLWV 268 (333)
Q Consensus 248 ~~l~~~--l~~k~~LlVlDdv~~ 268 (333)
....+. -.+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 122222 236899999999863
No 100
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.77 E-value=5.2e-08 Score=86.11 Aligned_cols=137 Identities=15% Similarity=0.230 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------eEEEEEeCCCCC-----------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------EVAMAVVSQTPS----------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------~~~wv~v~~~~~----------- 221 (333)
.++.+...+.+++ +++|+|+||+|||||++.+.+...+... ++ .....++++.+.
T Consensus 22 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 22 ALRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 3445555555677 9999999999999999999876533110 00 001222222210
Q ss_pred -------------------HHHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 222 -------------------ITKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 222 -------------------~~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
.......+++.+++... ...+ .+.....+.+.|..++-+++||++.+..|
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 01123345555655311 1122 34445668888888999999999987744
Q ss_pred -hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+..+.......|..||++||+.+.+..+++..
T Consensus 180 ~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 180 RIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 22222222334778999999998776666655
No 101
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.77 E-value=9.2e-09 Score=86.65 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=81.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--HhhcC---CC-------------eEEEEEeCCCCCH--HH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEKKM---FD-------------EVAMAVVSQTPSI--TK 224 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~---f~-------------~~~wv~v~~~~~~--~~ 224 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.. .+... |+ .....++++.+.. ..
T Consensus 15 ~l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 15 ILKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred eeeccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 5566666666777 99999999999999999998863 21110 00 0001123333211 01
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhh
Q 046889 225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
...+++.... ..-...+.....+.+.+..++-+++||++.+..| +..+.......|..||++||+......
T Consensus 93 ~~~~~l~~~~---~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 93 KNADFLRYVN---EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred cHHHHHhhcc---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 1222222111 1122234456678888889999999999987644 222222222347789999999998776
Q ss_pred -cccceEec
Q 046889 299 -MQAHIVDV 306 (333)
Q Consensus 299 -~~~~~~~l 306 (333)
++++.+.+
T Consensus 170 ~~~d~i~~l 178 (200)
T cd03217 170 IKPDRVHVL 178 (200)
T ss_pred hhCCEEEEE
Confidence 56665433
No 102
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.1e-08 Score=94.00 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~--- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+..++... |+. ....++.+.+ +.
T Consensus 18 vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 18 ISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence 4455555556677 9999999999999999999977543211 100 0012233322 11
Q ss_pred ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hc
Q 046889 223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RV 275 (333)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l 275 (333)
......+++.+++..... .+ -+...-.|.+.|..++-+|+||++.+..|.. .+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (369)
T PRK11000 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175 (369)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 112334556666642211 22 3445667888999999999999998775422 12
Q ss_pred cCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..... ..|..||++||+.+.+..++++.+.|
T Consensus 176 L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl 207 (369)
T PRK11000 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (369)
T ss_pred HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 12222 23778999999999887777766443
No 103
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.77 E-value=7.5e-09 Score=87.67 Aligned_cols=141 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE---------EEEEeCCCC------CHH---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV---------AMAVVSQTP------SIT--- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~---------~wv~v~~~~------~~~--- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++.. ...++++.. +..
T Consensus 17 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l 94 (207)
T PRK13539 17 LFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL 94 (207)
T ss_pred EEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence 3455555555677 9999999999999999999977543211 1000 001122111 111
Q ss_pred -----------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCC
Q 046889 224 -----------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYG 280 (333)
Q Consensus 224 -----------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~ 280 (333)
.-...+++.+++..... .+ .+...-.+...+..++-+++||++.+..| +..+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (207)
T PRK13539 95 EFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174 (207)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11234455555532111 11 23445567888888999999999987644 222222223
Q ss_pred CCCcEEEEeeCChHHHhhcccceEecCCC
Q 046889 281 NDGCKFLLTSRSRAACNQMQAHIVDVRTL 309 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~~~~~~~~l~~L 309 (333)
..|..||++||+...... +..+.++..
T Consensus 175 ~~~~tiii~sH~~~~~~~--~~~~~~~~~ 201 (207)
T PRK13539 175 AQGGIVIAATHIPLGLPG--ARELDLGPF 201 (207)
T ss_pred HCCCEEEEEeCCchhhcc--CcEEeecCc
Confidence 347789999999987665 555666653
No 104
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.76 E-value=2.3e-08 Score=86.15 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=78.0
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-E------EEEEeCCCC------CHHH------------
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-V------AMAVVSQTP------SITK------------ 224 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~------~wv~v~~~~------~~~~------------ 224 (333)
+..++ +++|+|++|+|||||++.+.+...+... ++. . ....+++.+ +..+
T Consensus 8 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 8 IQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 34566 9999999999999999999977543211 000 0 001222221 1111
Q ss_pred --------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCC-CCC
Q 046889 225 --------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYG-NDG 283 (333)
Q Consensus 225 --------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~-~~g 283 (333)
....+++.+++..... .+ .+.....+.+.+..++-+++||++.+..| +..+..... ..|
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~ 165 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1233455555432111 12 23445668888888999999999987654 222222222 237
Q ss_pred cEEEEeeCChHHHhhcccceEec
Q 046889 284 CKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 284 ~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..||++||+...+..++++.+.+
T Consensus 166 ~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 166 VTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEE
Confidence 78999999999877766666444
No 105
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.76 E-value=5.9e-09 Score=93.46 Aligned_cols=136 Identities=13% Similarity=0.218 Sum_probs=82.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~- 223 (333)
.++.+...+.+|+ +++|+|+||+|||||++.+.+...+... ++. ....++++.+ +..
T Consensus 17 ~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 17 ALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 3444444455667 9999999999999999999977543221 000 0112233322 111
Q ss_pred -----------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889 224 -----------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~ 274 (333)
.....+++.+++...... + .+...-.+...+..++-+++||++.+..| +..
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~ 174 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN 174 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 123344555555422111 1 23445568888889999999999987644 222
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+...... +..||+|||+.+.+..++++.
T Consensus 175 ~l~~~~~-~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 175 VIKNIGK-DKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred HHHHhcC-CCEEEEEcCCHHHHHHhCCEE
Confidence 2222333 578999999999877776666
No 106
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.76 E-value=1e-08 Score=94.91 Aligned_cols=139 Identities=16% Similarity=0.236 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------C--C----eEEEEEeCCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------F--D----EVAMAVVSQTPS------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------f--~----~~~wv~v~~~~~------- 221 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+..++... . . ......+++...
T Consensus 17 ~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 17 TVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred EEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 34555555566677 9999999999999999999976543210 0 0 000112222210
Q ss_pred ---------------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889 222 ---------------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-- 272 (333)
Q Consensus 222 ---------------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-- 272 (333)
.......+++.+++..... .+ -+.++..|.+.|..++-+|+||++.+..|.
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 0123345566666642222 22 344566788899999999999999877542
Q ss_pred ----hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
..+.......|..||++||+.+.+..++++.+
T Consensus 175 ~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii 210 (402)
T PRK09536 175 QVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELV 210 (402)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 22222223347789999999999887777663
No 107
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=1.7e-08 Score=90.56 Aligned_cols=140 Identities=14% Similarity=0.209 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C---C-----------------------------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F---D----------------------------- 209 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f---~----------------------------- 209 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+..++... + +
T Consensus 22 ~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 22 ALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred ceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 4555666666777 9999999999999999999976532110 0 0
Q ss_pred ----eEEEEEeCCCC-------CH------------------HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHH
Q 046889 210 ----EVAMAVVSQTP-------SI------------------TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKR 253 (333)
Q Consensus 210 ----~~~wv~v~~~~-------~~------------------~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~ 253 (333)
.....++++.+ ++ ......+++.+++. .... .+ .+.....+...
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 00011233321 00 11133445556653 1111 12 23445678888
Q ss_pred HccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 254 IEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 254 l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|..++-+|+||++.+..|.. .+.......|..||++||+.+.+..++++.+.|
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 99999999999998764422 221222234788999999998776666666433
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=9e-09 Score=89.39 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCC------CH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTP------SI- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~------~~- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+ .....++++.+ ++
T Consensus 16 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 16 AVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred EeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 3444555556677 8999999999999999999976543211 00 01122333322 11
Q ss_pred -----------------HHHHHHHHHHhCCCC--CCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889 223 -----------------TKIQDEIAGWLGIKE--LPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---- 273 (333)
Q Consensus 223 -----------------~~~~~~i~~~l~~~~--~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---- 273 (333)
.....++++.+++.. .... + .+...-.+.+.+..++-+++||++.+..|..
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 011234555566532 1111 1 2334556788888899999999998764422
Q ss_pred --hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 --RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 --~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|..||++||+...+..++++.+.+
T Consensus 174 l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l 209 (242)
T cd03295 174 LQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM 209 (242)
T ss_pred HHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 22222222 3778999999999877766666444
No 109
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.4e-08 Score=88.04 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+..
T Consensus 18 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 18 ILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence 4555665566777 9999999999999999999976542211 000 011223333210
Q ss_pred ------------HHHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889 223 ------------TKIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI 277 (333)
Q Consensus 223 ------------~~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~ 277 (333)
..-...+++.+++. .. ...+ .+.....+...+..++-+++||++.+..|.. .+..
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11223455566653 11 1122 3444566888888899999999998775422 2212
Q ss_pred CCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 278 PYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 278 ~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.... .|..||++||+.+....++++.+.+
T Consensus 176 ~~~~~~g~tii~~sH~~~~~~~~~d~i~~l 205 (241)
T PRK14250 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFL 205 (241)
T ss_pred HHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 2222 3778999999999877766666433
No 110
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.76 E-value=1.6e-08 Score=88.16 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--HhhcC---CC------------e-EEEEEeCCCCCH----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEKKM---FD------------E-VAMAVVSQTPSI---- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~---f~------------~-~~wv~v~~~~~~---- 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+.. .+... |+ . .....+++.+..
T Consensus 16 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 16 ILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 4555555566777 99999999999999999999873 22110 00 0 001122222110
Q ss_pred ---------------------------HHHHHHHHHHhCCCC------C-CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 223 ---------------------------TKIQDEIAGWLGIKE------L-PDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 223 ---------------------------~~~~~~i~~~l~~~~------~-~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
......+++.++++. . ...+ .+.....+.+.+..++-+++||++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 111223333334421 0 1122 3445567888888999999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhc-ccceE
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQM-QAHIV 304 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~ 304 (333)
+..|.. .+.......|..||++||+......+ ++..+
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~ 217 (248)
T PRK09580 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH 217 (248)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE
Confidence 775422 22122233477899999999887765 45443
No 111
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=7.3e-09 Score=94.71 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~--- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+..++... |+. ....++.|.+ ++
T Consensus 19 ~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 19 VIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN 96 (356)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence 4455555566677 8999999999999999999987543221 110 0111222322 11
Q ss_pred ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc
Q 046889 223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV 275 (333)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l 275 (333)
......+++.+++..... .+ -+.++-.|.+.|..++-+++||++.+..| +...
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE 176 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 112345566666642211 22 34456678899999999999999987644 2222
Q ss_pred cCCC-CCCCcEEEEeeCChHHHhhcccceE
Q 046889 276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
.... ...|..+|++||+...+..++++.+
T Consensus 177 l~~l~~~~g~tii~vTHd~~ea~~l~D~i~ 206 (356)
T PRK11650 177 IQRLHRRLKTTSLYVTHDQVEAMTLADRVV 206 (356)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 1112 2337889999999998877777663
No 112
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=7.4e-09 Score=94.42 Aligned_cols=140 Identities=11% Similarity=0.190 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC------H---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS------I--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~------~--- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. +....+.|.+. .
T Consensus 21 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 21 VIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence 4555655566677 9999999999999999999977654321 110 01112233221 1
Q ss_pred ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc
Q 046889 223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV 275 (333)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l 275 (333)
......+++.+++..... .+ -+..+-.|.+.|..++-+++||++.+..| +...
T Consensus 99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 178 (351)
T PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK 178 (351)
T ss_pred HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 112234555556542221 12 34456678899999999999999987644 2222
Q ss_pred cCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.... ...|..+|++||+...+..++++.+.|
T Consensus 179 l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm 210 (351)
T PRK11432 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVM 210 (351)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 1222 233788999999999888777776433
No 113
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.75 E-value=3.8e-08 Score=90.50 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C---CeEEE---------EEeCCCC------
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F---DEVAM---------AVVSQTP------ 220 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f---~~~~w---------v~v~~~~------ 220 (333)
....++.+...+..++ .++|+||+|+|||||++.+.+-..+... + +..-| -+.+|+-
T Consensus 348 ~~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 348 KKPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred CCcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 3467888899898898 9999999999999999999977654220 0 01112 2233322
Q ss_pred ------------CHHHHHH--------HHHHHhCCC--------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889 221 ------------SITKIQD--------EIAGWLGIK--------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE- 271 (333)
Q Consensus 221 ------------~~~~~~~--------~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 271 (333)
+.+++++ +++-.+... ...-..-+.+...+.+.+-+.++|+|||++-+..|
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 2222222 111111110 11112235567789999999999999999976533
Q ss_pred -----hhhccCCCCCCCcEEEEeeCChHHHhh
Q 046889 272 -----LDRVGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 272 -----~~~l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
+..-....+..|+.+|++||-+.+...
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 333334456679999999999988654
No 114
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.75 E-value=1.4e-08 Score=85.98 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=79.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. .....+++.+
T Consensus 13 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 13 ILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 4445555556677 8999999999999999999976543210 000 0011122221
Q ss_pred -CH------------------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 221 -SI------------------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 221 -~~------------------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
+. ......+++.+++.... ..+ .+.....+.+.|..++-+++||++.+..|
T Consensus 91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR 170 (206)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence 11 11123455555553211 112 23445668888889999999999987644
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+..+.......|..||++||+..... ++++.
T Consensus 171 ~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i 203 (206)
T TIGR03608 171 DEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRV 203 (206)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEE
Confidence 22221222233778999999998764 44443
No 115
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.75 E-value=5.2e-08 Score=82.89 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=80.3
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CHH------
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SIT------ 223 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~~------ 223 (333)
+...+..++ +++|+|++|+|||||++.+++...+... |+. .....+++.+ +..
T Consensus 17 ~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 17 FDLNVADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred eEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 333445666 9999999999999999999987643221 100 1122233322 110
Q ss_pred ------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889 224 ------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY 279 (333)
Q Consensus 224 ------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~ 279 (333)
.....+++.+++... ...+ .+...-.+...+..++-+++||++.+..|.. .+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 112234444444211 1112 3344556777788889999999998764422 222222
Q ss_pred C-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 280 G-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 280 ~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
. ..|..||++||+......++++.+.+.
T Consensus 175 ~~~~~~tii~vsh~~~~~~~~~d~v~~l~ 203 (213)
T TIGR01277 175 CSERQRTLLMVTHHLSDARAIASQIAVVS 203 (213)
T ss_pred HHhcCCEEEEEeCCHHHHHhhcCeEEEEE
Confidence 2 237789999999998776666665443
No 116
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=8.5e-09 Score=90.28 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+..++... ++ ...+.++++.+ +
T Consensus 19 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 19 LAVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred EEEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 34555665566677 9999999999999999999977543211 00 01123333332 1
Q ss_pred HHH---------------------------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEE
Q 046889 222 ITK---------------------------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVI 262 (333)
Q Consensus 222 ~~~---------------------------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlV 262 (333)
..+ ....+++.+++.... ..+ .+...-.+...+..++-+++
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111 112233444442111 112 23445567888888999999
Q ss_pred EeCCCCchhh------hhccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 263 LDDLWVQIEL------DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 263 lDdv~~~~~~------~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
||++.+..|. ..+...... .|..||++||+...+..++++.+.+
T Consensus 177 lDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 227 (255)
T PRK11300 177 LDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227 (255)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999877542 222222223 3778999999999887777766433
No 117
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.74 E-value=1.5e-08 Score=84.88 Aligned_cols=139 Identities=11% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--HhhcC---CCe---------EEEEEeCCCCCH---HHHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEKKM---FDE---------VAMAVVSQTPSI---TKIQ 226 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~---f~~---------~~wv~v~~~~~~---~~~~ 226 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+.. .+... |+. .....+++.+.. ..+.
T Consensus 23 ~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 23 QLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred cceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 35666666666777 99999999999999999999875 43211 100 011223333211 1222
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChH-HHhhc
Q 046889 227 DEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRA-ACNQM 299 (333)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~-v~~~~ 299 (333)
+.+....... .-...+.....+.+.+..++-+++||++.+..|.. .+.......|..||++||+.. ....+
T Consensus 101 ~~i~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 178 (194)
T cd03213 101 ETLMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL 178 (194)
T ss_pred HHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence 3322111110 12223445567888888999999999998764422 222222334788999999985 55556
Q ss_pred ccceEec
Q 046889 300 QAHIVDV 306 (333)
Q Consensus 300 ~~~~~~l 306 (333)
+++.+.+
T Consensus 179 ~d~v~~l 185 (194)
T cd03213 179 FDKLLLL 185 (194)
T ss_pred cCEEEEE
Confidence 6666444
No 118
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.74 E-value=2.3e-08 Score=87.66 Aligned_cols=141 Identities=15% Similarity=0.268 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~ 222 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. .....+++.+ +.
T Consensus 16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 16 TLLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 35566666666777 9999999999999999999977543211 000 0011222221 11
Q ss_pred ------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHc------cCceEEEEeCCCCchhh
Q 046889 223 ------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIE------KQRVLVILDDLWVQIEL 272 (333)
Q Consensus 223 ------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~ 272 (333)
......+++.+++... ...+ .+.....+.+.|. .++-+++||++.+..|.
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 1122344555555321 1122 2344556777777 47899999999877542
Q ss_pred h------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. .+..... ..|..||++||+...+..++++.+.+
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence 2 2222222 34778999999998877766666433
No 119
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=2.1e-08 Score=82.29 Aligned_cols=163 Identities=16% Similarity=0.212 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------------------CCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------------MFD 209 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------------~f~ 209 (333)
.....++.+...+.+++ +.+|+||||+|||||.+.+.+...+.. .|.
T Consensus 12 ~Gr~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 12 AGRRLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred ecceeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 34456667777777888 999999999999999999998765432 111
Q ss_pred eEEEE-----EeC-----CCCCHHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHcc------CceEEEEeCCC
Q 046889 210 EVAMA-----VVS-----QTPSITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEK------QRVLVILDDLW 267 (333)
Q Consensus 210 ~~~wv-----~v~-----~~~~~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~------k~~LlVlDdv~ 267 (333)
..+|- .++ +......+.++.+.+.+...... .+ -++..-.+.+.|.+ .+-.|.||++.
T Consensus 90 Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt 169 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT 169 (259)
T ss_pred eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc
Confidence 11110 011 11122345566666655442222 22 23344456666653 33467899998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEecC------------CCCHHHHHHHHHhhcccC
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR------------TLTEEESWRSAEGKRRVC 325 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~------------~L~~~e~~~lf~~~a~~~ 325 (333)
+..|+. .+...+...|+-|+++-|+-+.+..+++..+-|. .|++|--...|-.....+
T Consensus 170 saLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V~ 245 (259)
T COG4559 170 SALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRVG 245 (259)
T ss_pred cccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceeee
Confidence 875532 2223445557889999999999888887764332 366666666666555443
No 120
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.74 E-value=3.5e-08 Score=86.36 Aligned_cols=140 Identities=9% Similarity=0.180 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----hcC---CC----------eEEEEEeCCCC----C--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----KKM---FD----------EVAMAVVSQTP----S-- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~---f~----------~~~wv~v~~~~----~-- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+ ... ++ .....++++.+ .
T Consensus 18 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 18 LVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 4555655566777 9999999999999999999987543 111 00 01122333332 1
Q ss_pred --H----------------HHHHHHHHHHhCCCCC--------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889 222 --I----------------TKIQDEIAGWLGIKEL--------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD- 273 (333)
Q Consensus 222 --~----------------~~~~~~i~~~l~~~~~--------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~- 273 (333)
. ......+++.+++... ...+ .+...-.+.+.+..++-+++||++.+..|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 0 0112334555555321 1112 3445567888888999999999998765422
Q ss_pred -----hccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 -----RVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 -----~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.... ...|..||++||+.+....++++.+.+
T Consensus 176 ~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 176 QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence 221222 223778999999998877666655333
No 121
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.74 E-value=2.3e-08 Score=87.93 Aligned_cols=140 Identities=12% Similarity=0.187 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----C--CCe-----------------EEEEEeCCC
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----M--FDE-----------------VAMAVVSQT 219 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~-----------------~~wv~v~~~ 219 (333)
...++.+...+..++ +++|+|++|+|||||++.+.+...+.. . |+. ....++++.
T Consensus 17 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 17 HQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred eEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 345666666667777 999999999999999999997764321 0 000 001222222
Q ss_pred CC------H--------------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEE
Q 046889 220 PS------I--------------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLV 261 (333)
Q Consensus 220 ~~------~--------------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~Ll 261 (333)
+. . ......+++.+++... ...+ .+.....+.+.+..++-+|
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 174 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVI 174 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 11 0 0112334444554311 1112 3344556778888899999
Q ss_pred EEeCCCCchhhh------hccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889 262 ILDDLWVQIELD------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 262 VlDdv~~~~~~~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+||++.+..|.. .+..... ..|..||++||+.+.+..++++.+
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999998775422 2222222 237789999999998766666553
No 122
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.74 E-value=1.3e-08 Score=97.83 Aligned_cols=141 Identities=13% Similarity=0.164 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~------~ 221 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+... |+. ....++++.+ +
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 18 KALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred EEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 45666666666777 9999999999999999999876543210 100 0011222211 0
Q ss_pred H----------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh-
Q 046889 222 I----------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL- 272 (333)
Q Consensus 222 ~----------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~- 272 (333)
. ......+++.+++...... + .+.....+...|..++-+++||++.+..|.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 0 1123455666666432221 2 344566788889999999999999877542
Q ss_pred -----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 -----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 -----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+.+.+..++++.+.|
T Consensus 176 ~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 176 ETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2221222234778999999998877777666433
No 123
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.74 E-value=2.1e-08 Score=87.13 Aligned_cols=141 Identities=13% Similarity=0.235 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC-----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP----- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~----- 220 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+ .....++++.+
T Consensus 16 ~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 16 QALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 35666666667777 9999999999999999999866432110 00 00011222221
Q ss_pred -CH--------------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 221 -SI--------------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 221 -~~--------------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+. ..-..++++.+++... ...+ .+.....+.+.+..++-+++||++.
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 10 0112234444554311 1112 3344556888888899999999998
Q ss_pred Cchhhh------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIELD------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|.. .+..... ..|..||++||+...+..+++..+.+
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 765422 2222222 23778999999999877776666444
No 124
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.73 E-value=1.9e-08 Score=88.18 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------CC-----------eEEEEEeCCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------FD-----------EVAMAVVSQTP 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------f~-----------~~~wv~v~~~~ 220 (333)
.++.+...+.+|+ +++|+|++|+|||||++.+++..++... .. .....++++.+
T Consensus 21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 21 GCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred eeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 4555666666777 9999999999999999999977543110 00 00122333332
Q ss_pred C--------H-------------------HHHHHHHHHHhCCCC------CCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 221 S--------I-------------------TKIQDEIAGWLGIKE------LPDND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 221 ~--------~-------------------~~~~~~i~~~l~~~~------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
. . .....++++.++... ....+ .+.....+.+.+..++-+++||++
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 0 011223455555531 11122 344556688888899999999999
Q ss_pred CCchhhh------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 267 WVQIELD------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 267 ~~~~~~~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..|.. .+..... ..|..||++||+...+..++++.+.+
T Consensus 179 t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 8775422 2212222 23778999999999987766665333
No 125
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.73 E-value=8.7e-08 Score=88.72 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=84.2
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------CC-----------eEEEE----
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------FD-----------EVAMA---- 214 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------f~-----------~~~wv---- 214 (333)
+-+.--.+.++..-+..+. .|++|||||+|||||.+.++.+..+... |. ...|.
T Consensus 399 y~~~~~iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~ 476 (614)
T KOG0927|consen 399 YSDNPMIYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFM 476 (614)
T ss_pred CCCcchhhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHH
Confidence 3333356666666655455 7999999999999999999988754321 11 00000
Q ss_pred -EeCCCCCHHHHHHHHHHHhCCC-CCCCCCHH------HHHHHHHHHHccCceEEEEeCCCCchhhhhcc---CCCCC-C
Q 046889 215 -VVSQTPSITKIQDEIAGWLGIK-ELPDNDEL------VRASLLCKRIEKQRVLVILDDLWVQIELDRVG---IPYGN-D 282 (333)
Q Consensus 215 -~v~~~~~~~~~~~~i~~~l~~~-~~~~~~~~------~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~---~~~~~-~ 282 (333)
....+....+.++.|+.++|+. +....... ...-.+...+-..+-+||||++.+..+...+- -.+.. .
T Consensus 477 ~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~ 556 (614)
T KOG0927|consen 477 MPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP 556 (614)
T ss_pred HHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC
Confidence 0001113466788899999986 22222222 22334555556788999999999987765551 11222 2
Q ss_pred CcEEEEeeCChHHHhhc
Q 046889 283 GCKFLLTSRSRAACNQM 299 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~ 299 (333)
|. ||++||+..+...+
T Consensus 557 Gg-vv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 557 GG-VVLVSHDFRLISQV 572 (614)
T ss_pred Cc-eeeeechhhHHHHH
Confidence 54 89999998764443
No 126
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.73 E-value=2.3e-08 Score=83.32 Aligned_cols=149 Identities=15% Similarity=0.228 Sum_probs=94.0
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP 220 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~ 220 (333)
...||....+..+...+..++ +++++|+||+|||||++.+++..+... .|+. .-..+|++..
T Consensus 10 ~~~YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR 87 (237)
T COG0410 10 SAGYGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR 87 (237)
T ss_pred eecccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence 445677777777777777888 999999999999999999998876431 0110 0012333322
Q ss_pred C------HHH-H----------------HHHHHHHh-------CCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 221 S------ITK-I----------------QDEIAGWL-------GIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 221 ~------~~~-~----------------~~~i~~~l-------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
. +++ + .+.+++.| +.....-+.-+++.-.+.+.|-.++.||+||++....
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL 167 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc
Confidence 1 100 0 11222222 1111122234566677899999999999999997542
Q ss_pred ------hhhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 271 ------ELDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 271 ------~~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
++........ ..|..|+++-+|...|..++++.|.|.
T Consensus 168 aP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 168 APKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 2323223333 336689999999999998888876554
No 127
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.73 E-value=1.1e-08 Score=88.26 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~ 221 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+..++... ++ .....++++.+ +
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 14 HILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred EEecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 35566666666777 9999999999999999999977543210 00 00011223321 1
Q ss_pred HH---------------HHHHHHHHHhC-CCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 222 IT---------------KIQDEIAGWLG-IKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 222 ~~---------------~~~~~i~~~l~-~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
.. .....+++.++ ... ....+ .+.....+.+.+..++-+++||++.+..| +.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 11 11122233332 111 11112 23345567788888899999999987644 22
Q ss_pred hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|..||++||+.+.+..++++.+.+
T Consensus 172 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 205 (230)
T TIGR03410 172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVM 205 (230)
T ss_pred HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222222 3778999999999887766666433
No 128
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.73 E-value=5.4e-09 Score=88.12 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------------CC-eEEEEEeCCCC------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------------FD-EVAMAVVSQTP------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------------f~-~~~wv~v~~~~------~~ 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... +. ...+ +++.+ +.
T Consensus 15 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--~~q~~~~~~~~tv 90 (201)
T cd03231 15 LFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY--LGHAPGIKTTLSV 90 (201)
T ss_pred eeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE--eccccccCCCcCH
Confidence 4555555566777 9999999999999999999876543210 00 0111 22211 11
Q ss_pred ------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCC
Q 046889 223 ------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIP 278 (333)
Q Consensus 223 ------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~ 278 (333)
......+++.+++..... .+ .+.....+.+.+..++-+++||++.+..| +..+...
T Consensus 91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 122344556666542211 12 23445668888888999999999987644 2222222
Q ss_pred CCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 279 YGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 279 ~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....|..+|++||+......++++.+.+
T Consensus 171 ~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 171 HCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHhCCCEEEEEecCchhhhhccceeEec
Confidence 2334778999999887666666655443
No 129
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.73 E-value=1.7e-08 Score=85.03 Aligned_cols=143 Identities=15% Similarity=0.234 Sum_probs=90.0
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC------------------------------C
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM------------------------------F 208 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~------------------------------f 208 (333)
.|+....++++...+..+. .+.++|++|+||||+++.|....++... |
T Consensus 10 ~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred hcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 3445556666776677777 8999999999999999999876654321 1
Q ss_pred CeE-EEE---EeC--CCCC---HHHHHHHHHHHhCCCC--CCC------CCHHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 209 DEV-AMA---VVS--QTPS---ITKIQDEIAGWLGIKE--LPD------NDELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 209 ~~~-~wv---~v~--~~~~---~~~~~~~i~~~l~~~~--~~~------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
+.. ++- .|+ ...+ ..+-..+++..+++++ +.. +..++++-.+.+.|...+-++++|++....+
T Consensus 88 Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALD 167 (309)
T COG1125 88 PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167 (309)
T ss_pred CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccC
Confidence 100 000 000 0011 2334556677777742 111 2234556778899999999999999886533
Q ss_pred ------hhhccCC-CCCCCcEEEEeeCChHHHhhcccce
Q 046889 272 ------LDRVGIP-YGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 ------~~~l~~~-~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+...... ...-|..||++||+.+.|-.++++.
T Consensus 168 pI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred hhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence 2111111 1233788999999999988888877
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.73 E-value=2e-08 Score=86.39 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-------eEEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-------EVAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-------~~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... .. .....++++.+
T Consensus 20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 20 ALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 4566666666777 9999999999999999999876532110 00 00111222221
Q ss_pred --CHHH----------------H----HHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 221 --SITK----------------I----QDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 221 --~~~~----------------~----~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
+..+ . ...++..+++. .. ...+ .+...-.+.+.+..++-+++||++.+..|
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 1100 0 01344555542 11 1112 23445567888888999999999987644
Q ss_pred ------hhhccCCCCCC-CcEEEEeeCChHHHhhcccceEecC
Q 046889 272 ------LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 ------~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+....... |..||++||+.+.+..++++.+.++
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 220 (228)
T cd03257 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY 220 (228)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 22222222222 7789999999998877777765554
No 131
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.73 E-value=1.1e-08 Score=93.58 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC--------eEEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD--------EVAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~--------~~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... .. .....++.|.+
T Consensus 8 ~l~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 8 GVNDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred eEEeeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 3444455555677 9999999999999999999977643211 00 11122233322
Q ss_pred -CH------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 221 -SI------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 221 -~~------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
++ .....++++.+++...... + -+...-.+.+.|..++-+++||++.+..|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 1122345566666422222 2 23445668899999999999999987644
Q ss_pred --hhhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889 272 --LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 --~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+..... ..|..||++||+.+.+..++++.+
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 222222222 337789999999998877777663
No 132
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.73 E-value=6.3e-08 Score=79.96 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-----------------EeCCCCCHHHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-----------------VVSQTPSITKIQD 227 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~~~~~~~~~~ 227 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+.. ..+++ ++++.+.... .
T Consensus 17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~ 89 (178)
T cd03247 17 VLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALSSLISVLNQRPYLFD--T 89 (178)
T ss_pred ceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHHhhEEEEccCCeeec--c
Confidence 3444445555677 899999999999999999998754321 11211 1122211100 0
Q ss_pred HHHHHhCCCCCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcc
Q 046889 228 EIAGWLGIKELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQ 300 (333)
Q Consensus 228 ~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~ 300 (333)
.+.+.+ ....+ .+.....+.+.+..++-+++||++.+..|.. .+..... .+..||++||+..... .+
T Consensus 90 tv~~~i----~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~ 163 (178)
T cd03247 90 TLRNNL----GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HM 163 (178)
T ss_pred cHHHhh----cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hC
Confidence 111111 11122 3445667888888999999999998764422 2222222 3678999999999876 35
Q ss_pred cceEecC
Q 046889 301 AHIVDVR 307 (333)
Q Consensus 301 ~~~~~l~ 307 (333)
++.+.+.
T Consensus 164 d~~~~l~ 170 (178)
T cd03247 164 DKILFLE 170 (178)
T ss_pred CEEEEEE
Confidence 5555443
No 133
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.73 E-value=7e-08 Score=82.70 Aligned_cols=131 Identities=20% Similarity=0.311 Sum_probs=78.0
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCCC--------H-------------
Q 046889 174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTPS--------I------------- 222 (333)
Q Consensus 174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~~--------~------------- 222 (333)
.+++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+. .
T Consensus 4 ~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 4 DKGE--LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 3455 9999999999999999999976543210 000 00112222110 0
Q ss_pred ---------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCC
Q 046889 223 ---------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGN 281 (333)
Q Consensus 223 ---------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~ 281 (333)
......+++.+++..... .+ .+.....+.+.+..++.++++|++.+..| +..+......
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 112334455566542111 12 23345578888889999999999987644 2222222233
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|..||++||+.+....++++.+.+
T Consensus 162 ~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 162 AGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4778999999999776666665333
No 134
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=3.5e-07 Score=94.31 Aligned_cols=159 Identities=11% Similarity=0.142 Sum_probs=97.8
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhC
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLG 234 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~ 234 (333)
...++-|...++.|.. ....+++.|.||+|.||||++...... +..+.|+++. .+.++..+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3556777777776653 234569999999999999999987742 2268899996 44566666666666663
Q ss_pred CCCCC-------------CCCHHHHHHHHHHHHc--cCceEEEEeCCCCchh-----hhhccCCCCCCCcEEEEeeCChH
Q 046889 235 IKELP-------------DNDELVRASLLCKRIE--KQRVLVILDDLWVQIE-----LDRVGIPYGNDGCKFLLTSRSRA 294 (333)
Q Consensus 235 ~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~~vivTTr~~~ 294 (333)
..... ..+.......+...+. ..+.+|||||+....+ +-...+.....+.++|||||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 21000 0122233334444443 5789999999975421 11111232334667889999843
Q ss_pred HH--hh--cccceEecC----CCCHHHHHHHHHhhcc
Q 046889 295 AC--NQ--MQAHIVDVR----TLTEEESWRSAEGKRR 323 (333)
Q Consensus 295 v~--~~--~~~~~~~l~----~L~~~e~~~lf~~~a~ 323 (333)
-. .. .......+. +|+.+|+.+||.....
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~ 200 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS 200 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence 11 11 112224444 8999999999987654
No 135
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.8e-08 Score=87.39 Aligned_cols=140 Identities=13% Similarity=0.223 Sum_probs=83.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. .....+++.+
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 16 ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 4555555566777 9999999999999999999876532110 000 0111222221
Q ss_pred CHH--------------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 221 SIT--------------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 221 ~~~--------------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
+.. .....+++.+++... ...+ .+.....+.+.+..++-+++||++.+
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 111 112234445554311 1112 33445567888888999999999987
Q ss_pred chh------hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIE------LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~------~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..| +..+..... ..|..||++||+.+.+..++++.+.+
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 644 222222222 23778999999999888777776444
No 136
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.5e-08 Score=90.16 Aligned_cols=140 Identities=14% Similarity=0.224 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~----- 220 (333)
.++.+...+..|+ +++|+|+||+|||||++.+.+...+... ++. ....++.+.+
T Consensus 22 ~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 22 GLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 5566666666777 9999999999999999999977543211 000 0112223321
Q ss_pred --CHH------------------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh-
Q 046889 221 --SIT------------------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL- 272 (333)
Q Consensus 221 --~~~------------------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~- 272 (333)
+.. .....+++.+++. .. ...+ -+..+..|.+.|..++-+|+||++.+..|.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 110 1123344555553 11 1112 344566788888889999999999877542
Q ss_pred -----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 -----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 -----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+.+.+..++++.+.|
T Consensus 180 ~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l 218 (287)
T PRK13641 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL 218 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2222222334788999999999887777766433
No 137
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=5.1e-08 Score=83.02 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC------CHH----------
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP------SIT---------- 223 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~------~~~---------- 223 (333)
.+++|+|++|+|||||++.+.+...+... |+ .....++++.+ +..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 49999999999999999999876543210 00 00112233332 111
Q ss_pred ------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCC-CCc
Q 046889 224 ------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGN-DGC 284 (333)
Q Consensus 224 ------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~-~g~ 284 (333)
.....+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|.. .+...... .|.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 112334555555311 1122 3445566888888999999999998775422 22222222 277
Q ss_pred EEEEeeCChHHHhhcccceEec
Q 046889 285 KFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 285 ~vivTTr~~~v~~~~~~~~~~l 306 (333)
.||++||+.+....+++..+.+
T Consensus 184 tiii~sH~~~~~~~~~d~i~~l 205 (214)
T cd03297 184 PVIFVTHDLSEAEYLADRIVVM 205 (214)
T ss_pred EEEEEecCHHHHHHhcCEEEEE
Confidence 8999999999877776666544
No 138
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.72 E-value=2.1e-08 Score=87.12 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--Hhh-c----------CCC----eEE-EEEeCCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEK-K----------MFD----EVA-MAVVSQTPS----- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~-~----------~f~----~~~-wv~v~~~~~----- 221 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.. .+. + ... ... ...+++.+.
T Consensus 15 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 15 ILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 4556666666777 99999999999999999999863 111 1 000 000 122333321
Q ss_pred -HH-------------------------HHHHHHHHHhCCC-CC-----C-CCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 -IT-------------------------KIQDEIAGWLGIK-EL-----P-DND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 -~~-------------------------~~~~~i~~~l~~~-~~-----~-~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.. .....++..+++. .. . ..+ .+...-.+...+..++-+++||++.
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 10 1123344445553 11 1 122 3344566888888899999999998
Q ss_pred Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889 268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV 306 (333)
Q Consensus 268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l 306 (333)
+..| +..+.......|..||++||+.+.+..+ ++..+.+
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l 218 (243)
T TIGR01978 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL 218 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence 7644 2222222233477899999999988776 5655434
No 139
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.72 E-value=1.5e-08 Score=90.54 Aligned_cols=137 Identities=19% Similarity=0.282 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC-----------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP----------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~----------- 220 (333)
.++.+...+.+++ .++++||+|+|||||++.|.+-..+.+. ++. +-...|.|++
T Consensus 18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 5556666667788 8999999999999999999987664321 000 1111222222
Q ss_pred -------------CHHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------h-
Q 046889 221 -------------SITKIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------R- 274 (333)
Q Consensus 221 -------------~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~- 274 (333)
....-.+++++.+++... .-+..+.+.-.+.+.|-.++-+++||++-+..|.. .
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 123334566666666521 11223455667889999999999999998754311 1
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+.......|..+|.+||+...|-.++++.
T Consensus 176 i~~lh~~l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 176 IKKLHERLGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred HHHHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence 11112233788999999999998888887
No 140
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.72 E-value=1.9e-08 Score=87.32 Aligned_cols=139 Identities=12% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-----eEEEEEeCCCC------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-----EVAMAVVSQTP------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-----~~~wv~v~~~~------~~ 222 (333)
.++.+...+.+++ +++|+|+||+|||||++.+.+...+... .. .....++++.+ +.
T Consensus 17 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 17 ALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 4455555556677 8999999999999999999976533210 00 00011122221 11
Q ss_pred --------------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 223 --------------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 223 --------------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
......+++.+++..... .+ .+...-.+.+.+..++-+++||++.+..
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 112234455555532111 11 2344566888888899999999998775
Q ss_pred hhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 271 ELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 271 ~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|.. .+...... +..||++||+.+.+..++++.+.+
T Consensus 175 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 175 TDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVL 215 (242)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 422 22122222 567999999999887777766444
No 141
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=7.4e-08 Score=88.17 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=81.9
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC------CH----
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP------SI---- 222 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~------~~---- 222 (333)
.+..++ +++|+|++|+|||||++.+.+...+... ++. ....++.+.+ +.
T Consensus 20 ~i~~Ge--~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 20 TLPAQG--ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 344566 9999999999999999999977543210 000 0112233332 11
Q ss_pred --------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC-C
Q 046889 223 --------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG-N 281 (333)
Q Consensus 223 --------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~-~ 281 (333)
......+++.+++.... ..+ -+.....|.+.|..++-+++||++.+..|. ..+..... .
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 98 RYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177 (352)
T ss_pred HhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 11234556666664211 122 344566788899999999999999876442 22212222 2
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|..||++||+.+.+..++++.+.|
T Consensus 178 ~g~tii~vTHd~~~~~~~~d~i~~l 202 (352)
T PRK11144 178 INIPILYVSHSLDEILRLADRVVVL 202 (352)
T ss_pred cCCeEEEEecCHHHHHHhCCEEEEE
Confidence 3778999999999887777766444
No 142
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.72 E-value=1.3e-08 Score=88.08 Aligned_cols=140 Identities=12% Similarity=0.208 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------Ce--EEEEEeCCCC------CHH--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------DE--VAMAVVSQTP------SIT-- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~~--~~wv~v~~~~------~~~-- 223 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... + .. ....++++.+ +..
T Consensus 15 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 15 ALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 4445555556677 9999999999999999999976543210 0 00 0111222221 111
Q ss_pred ----------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hc
Q 046889 224 ----------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RV 275 (333)
Q Consensus 224 ----------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l 275 (333)
....++++.+++... ...+ .+...-.+.+.+..++-+++||++.+..|.. .+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 172 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 112344455554311 1112 2344556778888899999999998764422 22
Q ss_pred cCCCCCC-CcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPYGND-GCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....... |..||++||+...+..++++.+.+
T Consensus 173 l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l 204 (237)
T TIGR00968 173 LRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM 204 (237)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEE
Confidence 2222223 778999999999877777766444
No 143
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.2e-08 Score=88.33 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------------------------------CCCeEEEE
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------------------------------MFDEVAMA 214 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------------------------------~f~~~~wv 214 (333)
.++++...+..|+ +.+|+|.+|+|||||.|.+..-.++.. ||..----
T Consensus 21 al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 21 ALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 4455555566777 999999999999999999986654422 11110000
Q ss_pred EeCCC------------CCHHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 215 VVSQT------------PSITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 215 ~v~~~------------~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
+|.++ .....-...+++.+|+.+.....+ +.++-.|.+.|..++-+|+.|++.+..|-
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 01000 011233445666777764443332 34566799999999999999999887552
Q ss_pred --hhccCCC-CCCCcEEEEeeCChHHHhhcccce
Q 046889 273 --DRVGIPY-GNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 --~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
-.+.... ...|-.|+++||..+|...+|++.
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rV 212 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKRICDRV 212 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhh
Confidence 2221212 223889999999999988888776
No 144
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=6.1e-08 Score=88.41 Aligned_cols=140 Identities=12% Similarity=0.225 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... |+ .....++++.+
T Consensus 20 il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 20 ALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 3445555556677 9999999999999999999877543210 00 00011222221
Q ss_pred CH------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 221 SI------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 221 ~~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
+. ......+++.+++..... .+ -+.....+.+.|..++-+++||++.+..|.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11 012234556666542211 12 344556788888899999999999877542
Q ss_pred --hhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 --DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 --~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+..... ..|..||++||+.+.+..++++.+.|
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222222 23778999999999887776666433
No 145
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.5e-09 Score=95.89 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=89.6
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe---E--EEEEeCC---------------
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE---V--AMAVVSQ--------------- 218 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~---~--~wv~v~~--------------- 218 (333)
.||....+..-...|..|+ ..++||+||+|||||++.+.+-.- ..|.. + ..+...+
T Consensus 89 a~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 89 AYGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred eecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence 4676666555555555566 799999999999999999987211 12221 0 0110000
Q ss_pred C------CCHHHHHHHHHHHhCCCC----CCCCC---HHHHHHHHHHHHccCceEEEEeCCCCchhhhhccC---CCCCC
Q 046889 219 T------PSITKIQDEIAGWLGIKE----LPDND---ELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGI---PYGND 282 (333)
Q Consensus 219 ~------~~~~~~~~~i~~~l~~~~----~~~~~---~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~---~~~~~ 282 (333)
. ....++...++..+|.++ .+..+ .=.+.-.|.+.+-.++-||+||++.|..|...+.. -+...
T Consensus 165 e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~ 244 (582)
T KOG0062|consen 165 EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW 244 (582)
T ss_pred hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC
Confidence 0 011222222444555431 11111 11245678899999999999999999987665521 11233
Q ss_pred CcEEEEeeCChHHHhhcccceEecCC
Q 046889 283 GCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
+..+||+||++.+.+.+++.+|+++.
T Consensus 245 ~~T~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 245 KITSLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred CceEEEEeccHHHHHHHHHHHHHHhh
Confidence 56799999999999988888766554
No 146
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.71 E-value=6.9e-08 Score=84.30 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------------CCeEE--------------EEEe
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------------FDEVA--------------MAVV 216 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------------f~~~~--------------wv~v 216 (333)
.++.+. .+.+++ +++|+|++|+|||||++.+.+..++... |+..- ...+
T Consensus 16 ~l~~i~-~i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 16 KLHRLP-VPREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhcCC-CCCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 556665 355677 9999999999999999999877653211 11100 0001
Q ss_pred CCCC------------------CHHHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 217 SQTP------------------SITKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 217 ~~~~------------------~~~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
.+.. .......++++.+++...... + .+.....+.+.+..++-+++||++.+..+.
T Consensus 93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 1110 112234455666665421111 1 233455677778888899999999877543
Q ss_pred h------hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
. .+.......|+.||++||+...+..+++..+.+.
T Consensus 173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 173 KQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence 2 2222222336789999999998887777664443
No 147
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.71 E-value=2.9e-08 Score=98.02 Aligned_cols=141 Identities=19% Similarity=0.342 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-EEEEeCCCC------CH--------
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-AMAVVSQTP------SI-------- 222 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-~wv~v~~~~------~~-------- 222 (333)
|....++.+...+..|+ +++|+|+||+|||||++.+.+...+... +... ...++++.+ ..
T Consensus 14 ~~~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 14 SDAPLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred CCceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 43446666776677777 9999999999999999999987543211 1110 001111110 00
Q ss_pred --------------------------------------------HHHHHHHHHHhCCCC---CCCCC-HHHHHHHHHHHH
Q 046889 223 --------------------------------------------TKIQDEIAGWLGIKE---LPDND-ELVRASLLCKRI 254 (333)
Q Consensus 223 --------------------------------------------~~~~~~i~~~l~~~~---~~~~~-~~~~~~~l~~~l 254 (333)
..-...++..+++.. ....+ .+.....|.+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHH
Confidence 001122333344321 11112 234566788888
Q ss_pred ccCceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 255 EKQRVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..++-+|+||++.+..|... +.... +..||++||+...+..++++.+.|
T Consensus 172 ~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 89999999999998865332 21222 236999999999988877766444
No 148
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.71 E-value=1.7e-07 Score=84.34 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=89.7
Q ss_pred ccccchHHHHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMK-----DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
..|+|++..++.|..++. .+....+.++||.|+|||+|++.+.+..... + .....+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHHH
Confidence 568999999999988885 2344568899999999999999998876421 1 1122111111122 222233
Q ss_pred HhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcc---cc
Q 046889 232 WLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQ---AH 302 (333)
Q Consensus 232 ~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~---~~ 302 (333)
.++... ....+ ......+...+.+.+..+|+++..+...+... .| ..+-|..||+...+...+. ..
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~---~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLD-LP---PFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeec-CC---CeEEEEecCCccccCHHHHhhcce
Confidence 333211 01111 12233455555566666666665544433322 11 1455556666544322221 23
Q ss_pred eEecCCCCHHHHHHHHHhhcc
Q 046889 303 IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~a~ 323 (333)
.+.+++++.++..+++.+.+.
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 378999999999999998764
No 149
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.71 E-value=1.9e-08 Score=87.05 Aligned_cols=139 Identities=16% Similarity=0.254 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCCC------HH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTPS------IT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~~------~~- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+..++... ++. .....+++.+. ..
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 16 ALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 4455555566777 9999999999999999999976543211 000 01122333221 10
Q ss_pred -----------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889 224 -----------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~ 274 (333)
.....+++.+++.... ..+ .+.....+...+..++-+++||++.+..|.. .
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 1123345555553211 122 2334556888888899999999998764422 2
Q ss_pred ccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..... ..|..||++||+.+.+.. +++.+.|
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l 205 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEIEA-DDRLVVL 205 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhHhh-CCEEEEE
Confidence 222222 247789999999988764 5555444
No 150
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=9.8e-08 Score=85.03 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ....++.+.+
T Consensus 21 ~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 21 ALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 4555555566777 9999999999999999999977543221 000 0012233322
Q ss_pred --CH------------------HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 221 --SI------------------TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 221 --~~------------------~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+. ......+++.+++. .... .+ -+.....+...|..++-+++||++.+..|..
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 00 01123445555653 1111 12 3445667888888999999999998765422
Q ss_pred ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.......|..||++||+.+.+..++++.+.|
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l 217 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 221222234778999999999877766666433
No 151
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.71 E-value=3.2e-08 Score=84.91 Aligned_cols=140 Identities=14% Similarity=0.245 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC-----C
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP-----S 221 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~-----~ 221 (333)
...++.+...+.+++ +++|+|++|+|||||++.+.+..++... ++ ..+ ..+++.+ +
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~l~~~t 96 (225)
T PRK10247 20 AKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV-SYCAQTPTLFGDT 96 (225)
T ss_pred ceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc-EEEeccccccccc
Confidence 345666666666777 9999999999999999999986543211 00 011 1122221 1
Q ss_pred H----------------HHHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-----
Q 046889 222 I----------------TKIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----- 273 (333)
Q Consensus 222 ~----------------~~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----- 273 (333)
. ......+++.+++.. . ...+ .+...-.+.+.|..++-+++||++.+..|..
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (225)
T PRK10247 97 VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176 (225)
T ss_pred HHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 112234556666531 1 1112 2344566888888999999999998765422
Q ss_pred -hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 -RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 -~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+... .+++.+.+
T Consensus 177 ~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l 210 (225)
T PRK10247 177 NEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITL 210 (225)
T ss_pred HHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEE
Confidence 2222222 23778999999998875 45655555
No 152
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.6e-08 Score=83.10 Aligned_cols=138 Identities=12% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH------
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI------ 222 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~------ 222 (333)
.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+ +.
T Consensus 16 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 3444455677 9999999999999999999876543211 000 0011222221 11
Q ss_pred ------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCC
Q 046889 223 ------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIP 278 (333)
Q Consensus 223 ------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~ 278 (333)
......+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|. ..+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1122344555554311 1112 234455677888889999999999876442 222222
Q ss_pred CC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 279 YG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 279 ~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.. ..|..||++||+...+..++++.+.++
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 203 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLD 203 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhCEEEEEE
Confidence 22 237789999999998877777665443
No 153
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=2.2e-08 Score=89.11 Aligned_cols=140 Identities=16% Similarity=0.284 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~----- 220 (333)
.++.+...+..|+ +++|+|++|+|||||++.+++...+... ++. .....+++.+
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 5556666666777 9999999999999999999977543221 000 0012233321
Q ss_pred --CH------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh--
Q 046889 221 --SI------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-- 271 (333)
Q Consensus 221 --~~------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-- 271 (333)
++ ......+++.+++. ... ..+ .+.....+.+.|..++-+++||++.+..|
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 00 11123445555653 111 112 34456678888989999999999987754
Q ss_pred ----hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 ----LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ----~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... ..|..||++||+.+.+..++++.+.+
T Consensus 180 ~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 180 SKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM 219 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 222222222 24789999999998876666665433
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=2.1e-08 Score=86.48 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~ 223 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++ ..+ ..+++.+ +..
T Consensus 14 ~il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV-NTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce-EEEecccccCCCCcHH
Confidence 35556666666777 9999999999999999999987654221 10 011 1222221 111
Q ss_pred ------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 224 ------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 224 ------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
.....+++.+++..... .+ .+...-.+.+.+..++-+++||++.+..| +.
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~ 170 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 11223445555542111 12 33445668888888999999999987644 22
Q ss_pred hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|+.||++||+......++++.+.+
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVM 204 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 22222222 3788999999999877666666443
No 155
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.70 E-value=1.5e-08 Score=88.57 Aligned_cols=140 Identities=10% Similarity=0.186 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------------------EEEEEe
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------------------VAMAVV 216 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------------------~~wv~v 216 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. .....+
T Consensus 15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 15 VLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 4455555566777 9999999999999999999976543210 000 001122
Q ss_pred CCCC------CHH-------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 217 SQTP------SIT-------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 217 ~~~~------~~~-------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
++.+ +.. ....++++.+++... ...+ .+.....+.+.+..++-+++||+
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2221 110 112344555555321 1122 33445668888888999999999
Q ss_pred CCCchhhh------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIELD------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..+.. .+...... .|..||++||+......++++.+.|
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 98765422 22222222 3778999999998876666665433
No 156
>PTZ00202 tuzin; Provisional
Probab=98.70 E-value=6.6e-07 Score=81.82 Aligned_cols=164 Identities=12% Similarity=0.166 Sum_probs=99.9
Q ss_pred ccccccccccccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHH
Q 046889 149 IISLSEGFYNFKSRESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKI 225 (333)
Q Consensus 149 ~~~~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~ 225 (333)
....|.....|+||+.++..|...|.+ +...++.|+|++|+|||||++.+..... + ..++ ....+..++
T Consensus 254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~--vNprg~eEl 325 (550)
T PTZ00202 254 LQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVF--VDVRGTEDT 325 (550)
T ss_pred ccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEE--ECCCCHHHH
Confidence 335666778999999999999888853 2345999999999999999999986543 1 1222 222267999
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHH-----c-cCceEEEEe--CCCCch-hh-hhccCCCCCCCcEEEEeeCChHH
Q 046889 226 QDEIAGWLGIKELPDNDELVRASLLCKRI-----E-KQRVLVILD--DLWVQI-EL-DRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlD--dv~~~~-~~-~~l~~~~~~~g~~vivTTr~~~v 295 (333)
++.++..||.+.. ....++...|.+.+ . +++.+||+- +=.+.. .. +...+.+...-|.|++----+.+
T Consensus 326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 9999999998422 22233333333332 2 456667664 211111 11 11233444446666664433332
Q ss_pred --Hhhcccce--EecCCCCHHHHHHHHHhhc
Q 046889 296 --CNQMQAHI--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 --~~~~~~~~--~~l~~L~~~e~~~lf~~~a 322 (333)
++..-..- |.+.+++.+++..+-++..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11111222 7889999999988776654
No 157
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.70 E-value=6.4e-08 Score=82.84 Aligned_cols=140 Identities=14% Similarity=0.244 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+
T Consensus 20 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 20 VLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 4455555566677 9999999999999999999876432110 00 01112222221
Q ss_pred -CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 -SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
+.. .....+++.+++.... ..+ -+.....+...+..++-+++||++.+..|..
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 111 1123445555553211 112 2344556788888889999999998775422
Q ss_pred ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+..... ..|..||++||+......+ +..+.|+
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-d~v~~l~ 215 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMK 215 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc-CEEEEEe
Confidence 2222222 2367899999999887654 5555443
No 158
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.70 E-value=2.3e-08 Score=85.98 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=82.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+++...+... |+ ......+++.+
T Consensus 25 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 25 ILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 4555665566777 9999999999999999999977543210 00 00112222221
Q ss_pred -CHH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 221 -SIT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
+.. .-...+++.+++... ...+ .+.....+...|..++-+++||++.+..|.
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 111 112334455554311 1112 234455678888888999999999877542
Q ss_pred ---hhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 ---DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ---~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
..+..... ..|..||++||+...... +++.+.+.
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~ 220 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLV 220 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEE
Confidence 22222222 237789999999988755 45555443
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.70 E-value=7.4e-08 Score=88.27 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=80.8
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC------CHH---
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP------SIT--- 223 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~------~~~--- 223 (333)
.+..++ +++|+|++|+|||||++.+.+..++... ++ ......+.+.+ +..
T Consensus 19 ~i~~Ge--i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 19 TLPGQG--VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred EECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence 344566 9999999999999999999977543210 00 00011223322 111
Q ss_pred -------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889 224 -------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP 278 (333)
Q Consensus 224 -------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~ 278 (333)
.....+++.+++..... .+ -+...-.+.+.|..++-+++||++.+..|.. .+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 97 RYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred HHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 11344556666542111 12 3445667888888999999999998775422 22222
Q ss_pred CCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 279 YGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 279 ~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
... .|..||++||+.+.+..++++.+.|
T Consensus 177 l~~~~g~tiiivtH~~~~~~~~~d~i~~l 205 (354)
T TIGR02142 177 LHAEFGIPILYVSHSLQEVLRLADRVVVL 205 (354)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 222 3778999999999887777766444
No 160
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.70 E-value=6.4e-08 Score=88.45 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=86.3
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC------H----
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS------I---- 222 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~------~---- 222 (333)
++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. +....+.|.+. +
T Consensus 20 l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 20 LKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 344444455667 9999999999999999999987654221 110 00112223221 0
Q ss_pred --------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhcc
Q 046889 223 --------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVG 276 (333)
Q Consensus 223 --------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~ 276 (333)
......+++.+++...... + .+...-.|.+.|..++-+++||++.+..|. ....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1233456666766432222 2 344566788999999999999999876442 1221
Q ss_pred CCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 277 IPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 277 ~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
... ...|..+|++||+...+..++++.+.|
T Consensus 178 ~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl 208 (353)
T TIGR03265 178 RQLQRRLGVTTIMVTHDQEEALSMADRIVVM 208 (353)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 112 233788999999999888777766433
No 161
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=7.2e-08 Score=85.34 Aligned_cols=140 Identities=13% Similarity=0.237 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------- 220 (333)
.++.+...+..|+ +++|+|+||+|||||++.+.+...+... ++. ....++++.+
T Consensus 17 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 4455555566777 9999999999999999999876543211 000 0112333332
Q ss_pred CHH------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 221 SIT------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 221 ~~~------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
+.. .....+++.+++...... + .+.....+...+..++-+++||++.+..|
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 174 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 110 112344555555322211 1 23445668888888999999999987644
Q ss_pred -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+.......|..||++||+.+.+..++++.+.|
T Consensus 175 ~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 22222222334778999999999877666665333
No 162
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=7.5e-08 Score=85.86 Aligned_cols=140 Identities=17% Similarity=0.265 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCCC----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTPS---- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~~---- 221 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+...+... |+. ....++++.+.
T Consensus 22 ~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 22 ALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 4555555566777 9999999999999999999976543211 000 01123333320
Q ss_pred ---H------------------HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 222 ---I------------------TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 222 ---~------------------~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+ ......+++.+++. .... .+ .+.....|.+.|..++-+++||++.+..|..
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 0 01223445556653 1111 12 3445667888899999999999998775422
Q ss_pred ------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+.+..++++.+.|
T Consensus 180 ~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l 219 (290)
T PRK13634 180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM 219 (290)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2222222 23778999999999877766666433
No 163
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.69 E-value=5.4e-08 Score=83.67 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=83.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH-----HhhcC---CCe--------------EEEEEeCCCC--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA-----KEKKM---FDE--------------VAMAVVSQTP-- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~-----~~~~~---f~~--------------~~wv~v~~~~-- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.. .+... ++. ....++++.+
T Consensus 15 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 15 ALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 4455555556677 99999999999999999999876 32110 000 0011222321
Q ss_pred ---CH-------------------HHHHHHHHHHhCCCCC-------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 221 ---SI-------------------TKIQDEIAGWLGIKEL-------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 221 ---~~-------------------~~~~~~i~~~l~~~~~-------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
+. ......+++.+++... ...+ .+.....+...+..++-+++||++.+..
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred ccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 11 1112344555555311 1222 2345566888888899999999998764
Q ss_pred hh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 271 EL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 271 ~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
|. ..+....... ..||++||+.+.+..++++.+.+.
T Consensus 173 D~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~ 214 (227)
T cd03260 173 DPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLL 214 (227)
T ss_pred CHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEe
Confidence 42 2222222233 679999999998777777665443
No 164
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.3e-08 Score=89.02 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... +.. ....++++.. +.
T Consensus 17 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 17 ILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 4555555566777 9999999999999999999876432110 000 0011222221 11
Q ss_pred ---------------------HHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 223 ---------------------TKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 223 ---------------------~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
......+++.+++.. ....+ .+...-.+.+.+..++-+++||++.+..|..
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 011223344444421 11122 2344556888888899999999998765422
Q ss_pred ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.......|..||++||+......+++..+.+
T Consensus 175 ~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 175 VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 222222234778999999999877766665433
No 165
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=1.6e-08 Score=85.10 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------C--------CeEEEEEeCCC------CCH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------F--------DEVAMAVVSQT------PSI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------f--------~~~~wv~v~~~------~~~ 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... . ....| +++. .+.
T Consensus 16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~--~~q~~~~~~~~tv 91 (200)
T PRK13540 16 LLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF--VGHRSGINPYLTL 91 (200)
T ss_pred EEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE--eccccccCcCCCH
Confidence 4555555566777 9999999999999999999877543211 0 01112 1211 111
Q ss_pred HH-------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889 223 TK-------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI 277 (333)
Q Consensus 223 ~~-------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~ 277 (333)
.+ ....+++.+++.... ..+ .+...-.+.+.+..++-+++||++.+..|.. .+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~ 171 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 11 123445555543211 112 3344566888888899999999998765422 2222
Q ss_pred CCCCCCcEEEEeeCChHHHhhccc
Q 046889 278 PYGNDGCKFLLTSRSRAACNQMQA 301 (333)
Q Consensus 278 ~~~~~g~~vivTTr~~~v~~~~~~ 301 (333)
.....|..||++||+......+..
T Consensus 172 ~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 172 EHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred HHHHcCCEEEEEeCCchhccccch
Confidence 222347789999999888765433
No 166
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.4e-08 Score=87.90 Aligned_cols=141 Identities=12% Similarity=0.171 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-----eEEEEEeCCCC------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-----EVAMAVVSQTP------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-----~~~wv~v~~~~------~ 221 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... .. .....++++.. +
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 19 QALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 35556666666777 9999999999999999999876432110 00 00112223221 1
Q ss_pred HHH----------------HHHHHHHHhC-CC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889 222 ITK----------------IQDEIAGWLG-IK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------ 272 (333)
Q Consensus 222 ~~~----------------~~~~i~~~l~-~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------ 272 (333)
+.+ ....+++.++ +. .....+ .+.....+.+.+..++-+++||++.+..|.
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l 176 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence 110 1112222221 11 111112 233445677777788899999999876442
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+.+.+..++++.+.+
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 177 FDTIEQLREQGMTIFLVEQNANQALKLADRGYVL 210 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence 2222222334778999999998776666666433
No 167
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=8e-08 Score=82.94 Aligned_cols=139 Identities=13% Similarity=0.232 Sum_probs=82.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~----- 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+ .....++++.+
T Consensus 24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 24 VLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 4555555566677 9999999999999999999976542110 00 01112233321
Q ss_pred -CHH------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 -SIT------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
+.. .....+++.+++...... + -+.....+...+..++-+++||++.+..|..
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 111 112345556665422111 1 2334556788888899999999998775422
Q ss_pred ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+.+..++ +.+.+
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~-~~~~l 218 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEM 218 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC-EEEEE
Confidence 2222222 24778999999999877653 44433
No 168
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.69 E-value=1.8e-07 Score=75.14 Aligned_cols=127 Identities=15% Similarity=0.246 Sum_probs=82.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE----------------------------eCCC------C
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV----------------------------VSQT------P 220 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~----------------------------v~~~------~ 220 (333)
.++ +++|+||+|+|||||...|.+...+.+ ..+|+. |.++ +
T Consensus 24 ~ge--~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 24 AGE--IVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred CCc--EEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 455 899999999999999999998765432 233432 1110 0
Q ss_pred ----C--HHHHHHHHHHHhCCCCCC------CCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccC-CCCC
Q 046889 221 ----S--ITKIQDEIAGWLGIKELP------DNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGI-PYGN 281 (333)
Q Consensus 221 ----~--~~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~-~~~~ 281 (333)
+ ...-...++.+.|+.+.. -...+.....+.+.|-..+-+++||++.+..+ ...+.. -+..
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 0 123456677777765221 12234556678888888888899999987643 222211 2234
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+-.++++||..+-+..+....+.+
T Consensus 179 ~~~TllmVTH~~~Da~~ia~~~~fl 203 (231)
T COG3840 179 RKMTLLMVTHHPEDAARIADRVVFL 203 (231)
T ss_pred hCCEEEEEeCCHHHHHHhhhceEEE
Confidence 4778999999999888777666433
No 169
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=1.5e-08 Score=97.42 Aligned_cols=144 Identities=18% Similarity=0.278 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hcC--CCe-------------EEEEEeCCCC--
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KKM--FDE-------------VAMAVVSQTP-- 220 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~--f~~-------------~~wv~v~~~~-- 220 (333)
|....++.+...+..++ +++|+|+||+|||||++.+.+...+ .+. |+. ....++++.+
T Consensus 16 ~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 16 GGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93 (506)
T ss_pred CCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence 43446677777777777 9999999999999999999887542 110 100 0011122211
Q ss_pred ----CH---------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889 221 ----SI---------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQ 269 (333)
Q Consensus 221 ----~~---------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (333)
+. ......+++.+++...... + .+.....+.+.|..++-+++||++.+.
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 173 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173 (506)
T ss_pred CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 00 1123455666666422222 2 244566788888899999999999877
Q ss_pred hh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 270 IE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 270 ~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.| +..+.......|..||++||+...+..++++.+.+
T Consensus 174 LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 174 LTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence 54 22222222234778999999999887776666433
No 170
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.68 E-value=2.5e-08 Score=87.32 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC------H
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS------I 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~------~ 222 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+..++... ++. ....++++.+. .
T Consensus 15 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 15 LIVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 35556666666777 9999999999999999999876543211 000 00112222211 1
Q ss_pred H----------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889 223 T----------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE--- 271 (333)
Q Consensus 223 ~----------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 271 (333)
. .....+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 0 012233444444211 1112 33445567888888999999999987644
Q ss_pred ---hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 ---LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ---~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+.......|..||++||+......++++.+.|
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222222334778999999999887777766444
No 171
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=4e-08 Score=95.14 Aligned_cols=142 Identities=14% Similarity=0.235 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC--------CHH----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP--------SIT---- 223 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~--------~~~---- 223 (333)
++....++.+...+..++ +++|+|+||+|||||++.+++...+... |.. ....++++.+ +..
T Consensus 329 ~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 406 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMS 406 (530)
T ss_pred eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHH
Confidence 444456677777777777 9999999999999999999977543211 111 1112233321 111
Q ss_pred ---------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCCC
Q 046889 224 ---------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYGN 281 (333)
Q Consensus 224 ---------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~~ 281 (333)
.....+++.+++. .. ...+ .+.....+...+..++-+++||++.+..|... +....
T Consensus 407 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 484 (530)
T PRK15064 407 QWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-- 484 (530)
T ss_pred HhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--
Confidence 1223455566552 11 1112 34456678888889999999999987755322 21222
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..||++||+.+.+..++++.+.+
T Consensus 485 -~~tvi~vsHd~~~~~~~~d~i~~l 508 (530)
T PRK15064 485 -EGTLIFVSHDREFVSSLATRIIEI 508 (530)
T ss_pred -CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 347999999999988887777544
No 172
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.9e-09 Score=91.36 Aligned_cols=140 Identities=14% Similarity=0.235 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~ 222 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+ +.
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 25 TLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 45667777777777 9999999999999999999876432110 000 0011222221 11
Q ss_pred ----------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889 223 ----------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD- 273 (333)
Q Consensus 223 ----------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~- 273 (333)
......+++.+++... ...+ .+.....+...+..++-+++||++.+..|..
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1112344555554311 1122 3445566888888999999999998775432
Q ss_pred -----hccCCCC-CCCcEEEEeeCChHHHhhcccceEe
Q 046889 274 -----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 274 -----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
.+..... ..|..||++||+......++++.+.
T Consensus 183 ~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~ 220 (265)
T PRK10575 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA 220 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 2222222 2377899999999987766666533
No 173
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.68 E-value=1.5e-08 Score=93.03 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=86.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC------H---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS------I--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~------~--- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. +....+.|.+. +
T Consensus 29 ~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 29 VISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFEN 106 (375)
T ss_pred EEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHH
Confidence 4555555566677 9999999999999999999987654211 110 00112223221 0
Q ss_pred ---------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhc
Q 046889 223 ---------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRV 275 (333)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l 275 (333)
......+++.+++...... + .+..+..|.+.|..++-+++||++.+..|. ...
T Consensus 107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~ 186 (375)
T PRK09452 107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE 186 (375)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 1123345555665422221 2 344566788889999999999999876442 222
Q ss_pred cCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.... ...|..+|++||+...+..++++.+.|
T Consensus 187 L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl 218 (375)
T PRK09452 187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVM 218 (375)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 1222 233788999999999888777776433
No 174
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=5.6e-08 Score=84.62 Aligned_cols=139 Identities=13% Similarity=0.218 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----hcC--CC------------eEEEEEeCCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----KKM--FD------------EVAMAVVSQTPS----- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~--f~------------~~~wv~v~~~~~----- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+ .+. ++ .....++++.+.
T Consensus 17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t 94 (246)
T PRK14269 17 ALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS 94 (246)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence 4555555556677 9999999999999999999976421 110 00 000122233221
Q ss_pred H--------------------HHHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 222 I--------------------TKIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 222 ~--------------------~~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
. ..-...+++.+++.. ....+ .+.....+.+.+..++-+++||++.+..|
T Consensus 95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0 011234556655521 11122 34456678888889999999999987644
Q ss_pred h------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 L------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ..+..... .|..||++||+......++++.+.+
T Consensus 175 ~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 175 PISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEEEE
Confidence 2 22222222 2678999999999877777766444
No 175
>PRK13409 putative ATPase RIL; Provisional
Probab=98.68 E-value=1.2e-07 Score=92.38 Aligned_cols=138 Identities=15% Similarity=0.208 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC------CHH-------------
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP------SIT------------- 223 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~------~~~------------- 223 (333)
++.+...+..++ +++|+|+||+|||||++.+.+..++... ++ ....+++|.. ++.
T Consensus 355 l~~~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 355 LEVEGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred EEecceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence 334444445666 9999999999999999999987653321 11 0112233332 111
Q ss_pred HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEee
Q 046889 224 KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTS 290 (333)
Q Consensus 224 ~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTT 290 (333)
.....+++.+++.. ....+ -+.....+...|..++-+++||++.+..|... +...+. ..|..||++|
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 12234555665531 11222 34456678888999999999999987755332 222222 2377899999
Q ss_pred CChHHHhhcccceEec
Q 046889 291 RSRAACNQMQAHIVDV 306 (333)
Q Consensus 291 r~~~v~~~~~~~~~~l 306 (333)
|+...+..++++.+.+
T Consensus 512 HD~~~~~~~aDrvivl 527 (590)
T PRK13409 512 HDIYMIDYISDRLMVF 527 (590)
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999988877766444
No 176
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.68 E-value=5.9e-08 Score=83.58 Aligned_cols=132 Identities=13% Similarity=0.211 Sum_probs=78.9
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh-----hcC--CC----------eEEEEEeCCCC--------CHH----
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE-----KKM--FD----------EVAMAVVSQTP--------SIT---- 223 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-----~~~--f~----------~~~wv~v~~~~--------~~~---- 223 (333)
+..++ +++|+|++|+|||||++.+.+...+ .+. ++ .....++++.+ +..
T Consensus 9 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 86 (230)
T TIGR02770 9 LKRGE--VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI 86 (230)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence 44566 9999999999999999999987653 110 00 00112233322 110
Q ss_pred --------------HHHHHHHHHhCCCC---C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------
Q 046889 224 --------------KIQDEIAGWLGIKE---L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------ 274 (333)
Q Consensus 224 --------------~~~~~i~~~l~~~~---~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------ 274 (333)
.....+++.+++.. . ...+ .+...-.+.+.+..++-+++||++.+..|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~ 166 (230)
T TIGR02770 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK 166 (230)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 01223445555531 0 1111 24445668888888899999999987755322
Q ss_pred ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+...... .|..||++||+.+....++++.+.|
T Consensus 167 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 167 LLRELRQLFGTGILLITHDLGVVARIADEVAVM 199 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2122222 3778999999999877766666444
No 177
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.68 E-value=7.4e-08 Score=83.93 Aligned_cols=140 Identities=13% Similarity=0.211 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC--CCe--------------EEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM--FDE--------------VAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~--f~~--------------~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+. +. |+. ....++++.+.
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 15 EALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 34566666666777 99999999999999999998775432 10 000 00112222211
Q ss_pred -----HH-------------------HHHHHHHHHhCCC----CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 -----IT-------------------KIQDEIAGWLGIK----EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 -----~~-------------------~~~~~i~~~l~~~----~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.. .....+++.+++. .. ...+ .+.....+.+.+..++-+++||++.
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 10 1122334444542 10 1112 2344556888888899999999998
Q ss_pred Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|. ..+...... +..||++||+...+..++++.+.|
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l 216 (247)
T TIGR00972 173 SALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFF 216 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEE
Confidence 76442 222222222 367999999999877776666443
No 178
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=8.5e-08 Score=83.69 Aligned_cols=140 Identities=11% Similarity=0.148 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe------------EEEEEeCCCCC--
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE------------VAMAVVSQTPS-- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~------------~~wv~v~~~~~-- 221 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+ .+. |+. ....++++.+.
T Consensus 17 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 17 EVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 35566666677777 9999999999999999999987542 110 100 01122233221
Q ss_pred ----HH--------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 ----IT--------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ----~~--------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.. .....+++.+++.. ....+ .+.....+.+.+..++-+++||++.
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 01123344444321 01112 2344566788888899999999998
Q ss_pred Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|. ..+...... |..||++||+......++++.+.+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 175 ANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 76442 222222222 678999999999877666666444
No 179
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.67 E-value=3e-08 Score=87.40 Aligned_cols=140 Identities=15% Similarity=0.249 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPS-------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~-------- 221 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... ++ .....++++.+.
T Consensus 28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 5666666677777 9999999999999999999977643211 00 001122233210
Q ss_pred H-------------------HHHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh-
Q 046889 222 I-------------------TKIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR- 274 (333)
Q Consensus 222 ~-------------------~~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~- 274 (333)
. ......+++.+++. .. ...+ .+.....+...+..++-+++||++.+..|...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 0 01123445566652 11 1122 23445568888888999999999987754322
Q ss_pred -----ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 275 -----VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 -----l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+...... .|..||++||+.+....++++.+.+
T Consensus 186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 2222222 3778999999999887776666433
No 180
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=9.1e-08 Score=88.54 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=82.7
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC------CHH
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP------SIT 223 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~------~~~ 223 (333)
+...+..++ +++|+|++|+|||||++.+.+...+... |+ .....++.+.+ +..
T Consensus 47 isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~ 124 (400)
T PRK10070 47 ASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVL 124 (400)
T ss_pred EEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHH
Confidence 333344566 9999999999999999999977543211 00 00122233322 111
Q ss_pred ------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 224 ------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 224 ------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
....++++.+++.... ..+ -+...-.|.+.|..++-+++||++.+..| +.
T Consensus 125 enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~ 204 (400)
T PRK10070 125 DNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204 (400)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 1123455666664221 122 34456678888999999999999987644 22
Q ss_pred hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+.+..++++.+.|
T Consensus 205 ~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 205 DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 2222222 24778999999999887777766443
No 181
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=9e-08 Score=85.23 Aligned_cols=138 Identities=17% Similarity=0.285 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------------eEEEEEeCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------------EVAMAVVSQTP------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------------~~~wv~v~~~~------- 220 (333)
.++.+...+..|+ +++|+|+||+|||||++.+.+...+... ++ .....++++.+
T Consensus 22 ~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 22 ALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 4555666666777 9999999999999999999976543210 00 00112233321
Q ss_pred CH------------------HHHHHHHHHHhCCC--CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889 221 SI------------------TKIQDEIAGWLGIK--ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE--- 271 (333)
Q Consensus 221 ~~------------------~~~~~~i~~~l~~~--~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 271 (333)
+. ......+++.+++. .... .+ .+.....|.+.|..++-+++||++.+..|
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 11 01234556666663 1111 12 34456678899999999999999987744
Q ss_pred ---hhhccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889 272 ---LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 ---~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+...... .|..||++||+...+..++++.+
T Consensus 180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 2222222222 37789999999988776666663
No 182
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.67 E-value=8.7e-08 Score=79.38 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 158 NFKSRESTMKDIMEAMK---DEKVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
.|+||+++++.+...+. .+..+.+.|+|+.|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999982 3456799999999999999999999888765
No 183
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.67 E-value=4.2e-08 Score=94.81 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.....+...|..++-+|+||++.+..|... +.... ...|..||++||+...+..++++.+.|
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL 242 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4456678888889999999999987754222 21222 223778999999999988777776554
No 184
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=6.7e-08 Score=76.87 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=95.0
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------------------CC-CeE
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------------------MF-DEV 211 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------------------~f-~~~ 211 (333)
..++||...-..++.+.|.+++ |.+|+|.+|+|||||...+..+..++. +| -..
T Consensus 12 lsk~Yg~~~gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 12 LSKLYGPGKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred hhhhhCCCcCccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 4567777777777888888888 999999999999999999987654321 11 112
Q ss_pred EEEEeCCCC---------------------------CHHHHHHHHHHHhCCCCC----CC---CCHHHHHHHHHHHHccC
Q 046889 212 AMAVVSQTP---------------------------SITKIQDEIAGWLGIKEL----PD---NDELVRASLLCKRIEKQ 257 (333)
Q Consensus 212 ~wv~v~~~~---------------------------~~~~~~~~i~~~l~~~~~----~~---~~~~~~~~~l~~~l~~k 257 (333)
-|-.+.|++ ++.......++...++.. .+ ....+..-.|.+.|-..
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~ 169 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTR 169 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccC
Confidence 365555544 122233344555544311 11 11344566788888899
Q ss_pred ceEEEEeCCCCchh------hhhccC-CCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 258 RVLVILDDLWVQIE------LDRVGI-PYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 258 ~~LlVlDdv~~~~~------~~~l~~-~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+-|+++|++.-..+ +.++.. ...+-|-.++|+||+..++...+.....|
T Consensus 170 PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvm 225 (258)
T COG4107 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM 225 (258)
T ss_pred CceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceee
Confidence 99999999875533 112211 11233678999999999988776654333
No 185
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.67 E-value=1.6e-07 Score=82.46 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=79.1
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeC----CCCCH---------------HH
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVS----QTPSI---------------TK 224 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~----~~~~~---------------~~ 224 (333)
.+...+.+|+ +++|+|++|+|||||++.+.+...+... ++. ..++... ...+. ..
T Consensus 42 ~is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~ 119 (264)
T PRK13546 42 DISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKE 119 (264)
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 3344455677 9999999999999999999987643221 111 1111100 00111 11
Q ss_pred ---HHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEe
Q 046889 225 ---IQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLT 289 (333)
Q Consensus 225 ---~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivT 289 (333)
....++..+++... ...+ .+...-.+...+..++-+++||++.+..|.. .+.......|..||++
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIii 199 (264)
T PRK13546 120 IKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFV 199 (264)
T ss_pred HHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 11223334343211 1122 2334556788888899999999998775532 2222223347789999
Q ss_pred eCChHHHhhcccceEec
Q 046889 290 SRSRAACNQMQAHIVDV 306 (333)
Q Consensus 290 Tr~~~v~~~~~~~~~~l 306 (333)
||+...+..++++.+.+
T Consensus 200 sH~~~~i~~~~d~i~~l 216 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWI 216 (264)
T ss_pred cCCHHHHHHHcCEEEEE
Confidence 99999877766665433
No 186
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.3e-07 Score=83.78 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~ 222 (333)
.++.+...+..|+ +++|+|+||+|||||++.+.+...+... |+. ....++++.+ +.
T Consensus 19 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 19 ALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred eeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 4555555566777 9999999999999999999977543211 100 0012233321 11
Q ss_pred H------------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889 223 T------------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L 272 (333)
Q Consensus 223 ~------------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~ 272 (333)
. .....+++.+++.. ....+ .+.....+...|..++-+++||++.+..| +
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l 176 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 11233444445431 11122 34456678888889999999999987654 2
Q ss_pred hhccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889 273 DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 273 ~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
..+...... .|..||++||+.+.+..++++.+
T Consensus 177 ~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~ 209 (277)
T PRK13652 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY 209 (277)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 222222222 37789999999988766666653
No 187
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=1.2e-07 Score=80.56 Aligned_cols=139 Identities=12% Similarity=0.216 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~- 223 (333)
.++.+...+.+ + +++|+|++|+|||||++.+.+...+... +. ......+++.+ +..
T Consensus 15 ~l~~vs~~i~~-g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 15 ALDGVSLTLGP-G--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEcceeEEEcC-C--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 34444444444 3 8999999999999999999976532110 00 00012223321 111
Q ss_pred -----------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889 224 -----------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R 274 (333)
Q Consensus 224 -----------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~ 274 (333)
.....+++.+++..... .+ .+.....+.+.+..++-+++||++.+..|.. .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 171 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN 171 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 11223445555431111 11 2344566888888999999999998765422 2
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+...... +..||++||+.+....++++.+.++
T Consensus 172 ~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~ 203 (211)
T cd03264 172 LLSELGE-DRIVILSTHIVEDVESLCNQVAVLN 203 (211)
T ss_pred HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 2222222 4679999999998877777665443
No 188
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=1.5e-07 Score=81.19 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=79.0
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CHH------
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SIT------ 223 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~~------ 223 (333)
+...+..++ +++|+|++|+|||||++.+.+...+... |+ .....++++.+ +..
T Consensus 18 is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 18 FDLTVERGE--RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 444445667 9999999999999999999876543211 00 00011222221 110
Q ss_pred ------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889 224 ------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY 279 (333)
Q Consensus 224 ------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~ 279 (333)
.-...+++.+++.. ....+ .+.....+.+.+..++-+++||++.+..|.. .+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQV 175 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11223444444421 11112 2344556777888889999999998765422 222222
Q ss_pred C-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 280 G-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 280 ~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ..|..||++||+.+.+..++++.+.+
T Consensus 176 ~~~~~~tiii~sH~~~~~~~~~d~i~~l 203 (232)
T PRK10771 176 CQERQLTLLMVSHSLEDAARIAPRSLVV 203 (232)
T ss_pred HHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 2 23778999999999877776666444
No 189
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2e-06 Score=78.64 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=117.2
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW 232 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 232 (333)
..+.+|+.+++.+...|.+ +.+.-+.|.|+.|+|||+.++.+.........-...+++.+....++..++..|++.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 3478999999999887753 333448899999999999999999988754332236788888888999999999999
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCchh-----hhhccCCCCCCCc--EEEEeeCChHHHhhc----
Q 046889 233 LGIKELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQIE-----LDRVGIPYGNDGC--KFLLTSRSRAACNQM---- 299 (333)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~--~vivTTr~~~v~~~~---- 299 (333)
++..+....+..+....+.+.+.. +..++|||++..... +-.+........+ -+|.++.+..+...+
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 975444556666777777777765 778999999875422 2222111111133 456667666553333
Q ss_pred ----ccceEecCCCCHHHHHHHHHhhcc
Q 046889 300 ----QAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 300 ----~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+...+..+|-+.+|-...+..++-
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 233377888888888888888764
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.4e-08 Score=97.89 Aligned_cols=142 Identities=14% Similarity=0.159 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC--
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP-- 220 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~-- 220 (333)
+....++++...+..++ +++|+|+||+|||||++.+.+...+... ++ .+.+ +.+.+
T Consensus 16 ~~~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~--v~q~~~~ 91 (510)
T PRK09700 16 GPVHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI--IYQELSV 91 (510)
T ss_pred CCeEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE--Eeecccc
Confidence 33345666776677777 9999999999999999999876532110 00 0111 12111
Q ss_pred ----CH-------------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 221 ----SI-------------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 221 ----~~-------------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
+. ......+++.+++..... .+ .+.....+.+.|..++-+++||+
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE 171 (510)
T PRK09700 92 IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE 171 (510)
T ss_pred cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 112334566666642211 12 24456678888889999999999
Q ss_pred CCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..|.. .+.......|..||++||+...+..++++.+.+
T Consensus 172 Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l 218 (510)
T PRK09700 172 PTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM 218 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 98775422 222222334778999999999887777666433
No 191
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4.1e-08 Score=86.47 Aligned_cols=141 Identities=11% Similarity=0.249 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~ 222 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+ +.
T Consensus 21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 35666776677777 9999999999999999999877543211 000 0011222221 11
Q ss_pred H----------------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889 223 T----------------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD- 273 (333)
Q Consensus 223 ~----------------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~- 273 (333)
. .....+++.+++.. ....+ .+.....+.+.+..++-+++||++.+..|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 0 11233444445431 11112 3344566888888899999999998765422
Q ss_pred -----hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 274 -----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 -----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...... .|..||++||+...+..++++.+.+
T Consensus 179 ~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l 217 (265)
T PRK10253 179 QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL 217 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22222222 3778999999999877777766333
No 192
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.65 E-value=4.7e-08 Score=95.08 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCCC------HHHHH------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTPS------ITKIQ------ 226 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~~------~~~~~------ 226 (333)
...++.+...+..|+ +++|+|+||+|||||++.+.+...+... +. .....++++.+. ..+.+
T Consensus 20 ~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 20 KQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence 446677777777788 9999999999999999999987643211 11 011123344321 11111
Q ss_pred ------------------------------------------------HHHHHHhCCCC----CCCCC-HHHHHHHHHHH
Q 046889 227 ------------------------------------------------DEIAGWLGIKE----LPDND-ELVRASLLCKR 253 (333)
Q Consensus 227 ------------------------------------------------~~i~~~l~~~~----~~~~~-~~~~~~~l~~~ 253 (333)
..++..+++.. ....+ .+.....|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHH
Confidence 11122223211 01111 23345668888
Q ss_pred HccCceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 254 IEKQRVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 254 l~~k~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..++-+++||++.+..|... +...+ +..||++||+.+.+..++++.+.|
T Consensus 178 l~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 178 LLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred HhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 888999999999998755222 21222 236999999999888777766443
No 193
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.7e-08 Score=85.15 Aligned_cols=143 Identities=17% Similarity=0.242 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CeE-------------EEEEeCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMF---DEV-------------AMAVVSQTP------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f---~~~-------------~wv~v~~~~------- 220 (333)
..++.+...+..++ .++|+|++|+|||||++.+..-..+.... +.. .-..+-|++
T Consensus 18 ~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 18 AALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred eeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 45555666666677 89999999999999999998766543210 000 001111222
Q ss_pred ---------------C---HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 221 ---------------S---ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 221 ---------------~---~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
. ........+..+++......+ .+..+-.|...|.-++.++|||++.+..|..
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 1 123344556666664222222 3344567888888899999999998775522
Q ss_pred ---hccCCCCCC-CcEEEEeeCChHHHhhcccceEecCC
Q 046889 274 ---RVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 274 ---~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
.+....... |..||++||+.+....++...+.|+.
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence 222223333 67899999999998887777755543
No 194
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.64 E-value=2.1e-08 Score=91.55 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC----------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS---------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~---------- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... |+. ....++.|.+.
T Consensus 17 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 17 VLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred EEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence 3444444455677 9999999999999999999987543211 100 00112222210
Q ss_pred ------------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889 222 ------------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------ 271 (333)
Q Consensus 222 ------------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------ 271 (333)
.......+++.+++..... .+ -+.....|.+.|..++-+++||++.+..|
T Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~ 174 (353)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174 (353)
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 0112334566666642211 12 34456678889999999999999987644
Q ss_pred hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... ..|..+|++||+...+..++++.+.|
T Consensus 175 l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl 210 (353)
T PRK10851 175 LRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM 210 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 222222222 33788999999999988888777444
No 195
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.64 E-value=3e-08 Score=95.07 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~------~ 221 (333)
..++.+...+.+++ +++|+|+||+|||||++.+.+..++... ++. ....++++.+ +
T Consensus 12 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 12 KALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 35566666666777 9999999999999999999876543110 000 0011222221 0
Q ss_pred H---------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889 222 I---------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-- 272 (333)
Q Consensus 222 ~---------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-- 272 (333)
. ......+++.+++..... .+ .+...-.+.+.|..++-+++||++.+..|.
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 0 112334555666532211 12 234456688888889999999999877542
Q ss_pred ----hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
..+.......|..||++||+.+.+..++++.+
T Consensus 170 ~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~ 205 (491)
T PRK10982 170 VNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT 205 (491)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 22222223347789999999988777666553
No 196
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=6.9e-08 Score=78.01 Aligned_cols=127 Identities=13% Similarity=0.200 Sum_probs=75.6
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCK 252 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 252 (333)
+.+++ +++|+|++|+|||||++.+.+...+ ....+++.-...... ........++... .-..-+.....+..
T Consensus 22 i~~g~--~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~ 93 (157)
T cd00267 22 LKAGE--IVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALAR 93 (157)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHH
Confidence 44565 9999999999999999999887643 233333321111100 0001111111100 01223445566888
Q ss_pred HHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 253 RIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+...+-+++||++.+..|. ..+.......+..+|++||+......++++.+.+.
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 88888999999999876442 22222222236789999999999887766665543
No 197
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1e-07 Score=87.71 Aligned_cols=140 Identities=15% Similarity=0.267 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~--- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. +....+.|.+ +.
T Consensus 34 ~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 34 AVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence 4455555556677 9999999999999999999977543211 100 0111222322 11
Q ss_pred ---------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hc
Q 046889 223 ---------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RV 275 (333)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l 275 (333)
......+++.+++...... + .+..+-.|.+.|..++-+|+||++.+..|.. ..
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1123455666666422221 2 3455667889999999999999998764421 11
Q ss_pred cCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.... ...|..+|++||+...+..++++.+.|
T Consensus 192 l~~l~~~~g~tii~vTHd~~ea~~laDri~vl 223 (377)
T PRK11607 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIM 223 (377)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 1111 233778999999999888887776433
No 198
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=83.18 Aligned_cols=140 Identities=11% Similarity=0.163 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h----hcC--CC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E----KKM--FD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~----~~~--f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+... + .+. ++ .....++++.+.
T Consensus 27 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 27 HALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred EEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 45666766677788 999999999999999999987753 0 110 00 001122233211
Q ss_pred -----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 -----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 -----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.. ....++++.++.. .....+ .+.....+.+.+..++-+++||++.
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 10 1122334444431 111122 3444566888888899999999998
Q ss_pred Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|. ..+..... .+..||++||+...+..++++.+.+
T Consensus 185 ~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 185 SALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred ccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 76442 22222222 2567999999999877776666444
No 199
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=7e-08 Score=87.34 Aligned_cols=137 Identities=11% Similarity=0.212 Sum_probs=85.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. .....+.|.+
T Consensus 30 ~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 30 ALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred EEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 4556666666777 9999999999999999999976543210 000 0112233332
Q ss_pred --CHH-------------------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 --SIT-------------------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 --~~~-------------------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
... ....++++.+++.. . ...+ .+.....|...|..++-+||+|++.+..|.
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 111 12334555555531 1 1112 344566788888899999999999877542
Q ss_pred ------hhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889 273 ------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 ------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
..+..... ..|..||++||+..++..++++.
T Consensus 188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 22222222 23788999999999988777766
No 200
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.64 E-value=2.3e-08 Score=91.83 Aligned_cols=132 Identities=14% Similarity=0.236 Sum_probs=80.7
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------------EEEEEeCCCCC------H-
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------------VAMAVVSQTPS------I- 222 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------------~~wv~v~~~~~------~- 222 (333)
+..++ +++|+|++|+|||||++.+.+...+... ++. .....+.+.+. .
T Consensus 47 i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~ 124 (382)
T TIGR03415 47 IEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE 124 (382)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence 34566 8999999999999999999876543210 000 01122223221 1
Q ss_pred -----------------HHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 223 -----------------TKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 223 -----------------~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
......+++.+++....... .+.....|.+.|..++-++++|++.+..| +.
T Consensus 125 eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~ 204 (382)
T TIGR03415 125 ENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQ 204 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 11223455666664322222 23456678888999999999999987644 22
Q ss_pred hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+.+..++++.+.|
T Consensus 205 ~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl 238 (382)
T TIGR03415 205 DELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM 238 (382)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2222222 23778999999999887777766433
No 201
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.64 E-value=6.8e-08 Score=84.40 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--Hh-hc----------C-----CCeEEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KE-KK----------M-----FDEVAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~-~~----------~-----f~~~~wv~v~~~~------ 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+.. .+ .+ . +.......+++.+
T Consensus 22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 5666666677777 99999999999999999998741 11 11 0 0110112232321
Q ss_pred CHH-------------------------HHHHHHHHHhCCCC------C-CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 221 SIT-------------------------KIQDEIAGWLGIKE------L-PDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 221 ~~~-------------------------~~~~~i~~~l~~~~------~-~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+.. .....++..+++.. . ...+ .+.....+.+.+..++-+++||++.
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 111 01123445555431 1 1122 3345567888888999999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV 306 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l 306 (333)
+..|.. .+.......|..||++||+....... ++..+.+
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l 225 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM 225 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence 775422 22222233477899999999887654 4544333
No 202
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.64 E-value=2.5e-07 Score=87.32 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEE----eCCCCCHH-------------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAV----VSQTPSIT------------- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~----v~~~~~~~------------- 223 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+...+... ++. ...+. .....+..
T Consensus 39 IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 39 ALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred EEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 3455555566677 9999999999999999999987643221 110 00010 01111111
Q ss_pred -----HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEE
Q 046889 224 -----KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKF 286 (333)
Q Consensus 224 -----~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~v 286 (333)
.....+++.+++... ...+ .+..+..+.+.|..++-+++||++.+..|.. .+.......|..|
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TI 196 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 112234555555321 1222 2344556888888899999999998775432 2222223447789
Q ss_pred EEeeCChHHHhhcccceEec
Q 046889 287 LLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 287 ivTTr~~~v~~~~~~~~~~l 306 (333)
|++||+...+..++++.+.|
T Consensus 197 IIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 197 FFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred EEEECCHHHHHHhCCEEEEE
Confidence 99999998877776666433
No 203
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.64 E-value=1.1e-07 Score=84.01 Aligned_cols=139 Identities=20% Similarity=0.255 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... |+ ......+++.+
T Consensus 22 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 22 IFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 4455555555677 9999999999999999999977543210 00 00112223322
Q ss_pred CHHH-------------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 SITK-------------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 ~~~~-------------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
++.+ ....+++.+++.... ..+ -+.....+.+.+..++-+++||++.+..|..
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 1111 111234445543211 112 2334556788888889999999998764422
Q ss_pred ----hccCCCCC-CCcEEEEeeCChHHHhhcccceEe
Q 046889 274 ----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 274 ----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
.+...... .|..||++||+...+..++++.+.
T Consensus 180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~ 216 (269)
T PRK11831 180 GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI 216 (269)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence 22222222 377899999998877766665533
No 204
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=1e-07 Score=79.65 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h-hcC--CCe--------EEEEEeCCCCCH---HHHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E-KKM--FDE--------VAMAVVSQTPSI---TKIQDE 228 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~-~~~--f~~--------~~wv~v~~~~~~---~~~~~~ 228 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+... + .+. |+. .....+++.+.. ..+.+.
T Consensus 22 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 22 LLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 3444544455666 999999999999999999997431 1 110 110 112233333211 122222
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChH-HHhhccc
Q 046889 229 IAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRA-ACNQMQA 301 (333)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~-v~~~~~~ 301 (333)
+.-..... .-..-+.....+.+.+..++-++++|++.+..|. ..+.......|..||++||+.+ ....+++
T Consensus 100 l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d 177 (192)
T cd03232 100 LRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD 177 (192)
T ss_pred HHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCC
Confidence 22111000 1222344556688888889999999999876442 2222222334788999999987 3455556
Q ss_pred ceEecC
Q 046889 302 HIVDVR 307 (333)
Q Consensus 302 ~~~~l~ 307 (333)
+.+.|+
T Consensus 178 ~i~~l~ 183 (192)
T cd03232 178 RLLLLK 183 (192)
T ss_pred EEEEEc
Confidence 655553
No 205
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.63 E-value=5.3e-08 Score=84.87 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=79.3
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--C--------Ce----EEEEEeCCCC------CH---
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--F--------DE----VAMAVVSQTP------SI--- 222 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f--------~~----~~wv~v~~~~------~~--- 222 (333)
++.+...+..++ +++|+|++|+|||||++.+.+.....+. | .. ....++++.+ +.
T Consensus 12 l~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 12 LGPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred ecceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 334444455666 9999999999999999999865421110 0 00 0112222221 00
Q ss_pred --------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHcc-------CceEEEEeCCCCchh----
Q 046889 223 --------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEK-------QRVLVILDDLWVQIE---- 271 (333)
Q Consensus 223 --------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~-------k~~LlVlDdv~~~~~---- 271 (333)
.....++++.+++... ...+ .+.....+...+.. ++-+++||++.+..|
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 1123445555655321 1122 23445567777765 558999999987644
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+.......|..||++||+.+....+++..+.+
T Consensus 170 ~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 206 (248)
T PRK03695 170 AALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL 206 (248)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 22222223334778999999998776666665333
No 206
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.63 E-value=1.3e-06 Score=86.10 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC----eEEEEEeCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD----EVAMAVVSQTP-------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~----~~~wv~v~~~~-------- 220 (333)
..++++...+.+|+ .|+|+|.+|+|||||++.+.+...+.. +++ .....+++|+.
T Consensus 487 ~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 487 PVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred chhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 58888888888888 999999999999999999987665432 111 01122344432
Q ss_pred ----------CHHHHHHHH--------HHHhCC--------CCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889 221 ----------SITKIQDEI--------AGWLGI--------KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDR 274 (333)
Q Consensus 221 ----------~~~~~~~~i--------~~~l~~--------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 274 (333)
+.+++.+.. +.++.. .+..-+..+.++-.+.+.|-.++-+|+||++.+..|-..
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence 222322211 111111 011222345567789999999999999999987754222
Q ss_pred c-----cCCCCCCCcEEEEeeCChHHHhhc
Q 046889 275 V-----GIPYGNDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 275 l-----~~~~~~~g~~vivTTr~~~v~~~~ 299 (333)
- .+.....|+.+|++||.......+
T Consensus 645 E~~I~~~L~~~~~~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 645 EAIILQNLLQILQGRTVIIIAHRLSTIRSA 674 (709)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccchHhhhc
Confidence 1 011122367889999988876544
No 207
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.63 E-value=1.2e-07 Score=80.13 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----H-----------HHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----I-----------TKI 225 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~-----------~~~ 225 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+..++... |+.. ..++++.+. . ...
T Consensus 20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~-i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE-EEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 5566666667777 9999999999999999999987654321 1111 122233211 0 111
Q ss_pred HHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h-ccCCCCC
Q 046889 226 QDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R-VGIPYGN 281 (333)
Q Consensus 226 ~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~-l~~~~~~ 281 (333)
....++.++.. .....+ .+.....+.+.+..++-++++|++.+..+.. . +......
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~ 176 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL 176 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc
Confidence 11222222110 011122 3445667888999999999999998764322 2 1111223
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|..||++||+...... +++.+.+
T Consensus 177 ~~~tvi~~sh~~~~~~~-~d~i~~l 200 (204)
T cd03250 177 NNKTRILVTHQLQLLPH-ADQIVVL 200 (204)
T ss_pred CCCEEEEEeCCHHHHhh-CCEEEEE
Confidence 37889999999988776 5555544
No 208
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=1.5e-07 Score=83.65 Aligned_cols=139 Identities=15% Similarity=0.227 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP----- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~----- 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+...+... ++. ....++++.+
T Consensus 22 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 22 ALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 4455555556677 9999999999999999999876432210 000 0011222221
Q ss_pred --CHH------------------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 221 --SIT------------------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 221 --~~~------------------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+.. .....+++.+++.. . ...+ .+.....+...+..++-+++||++.+..|..
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 110 01223344555531 1 1112 2444566888888899999999998775422
Q ss_pred ------hccCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889 274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
.+.......|..||++||+...+..+++..+.
T Consensus 180 ~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 217 (280)
T PRK13649 180 GRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYV 217 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEE
Confidence 22222223477899999999987766666533
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.62 E-value=5.5e-08 Score=93.57 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hcC--CCe-------------EEEEEeCCCC-----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KKM--FDE-------------VAMAVVSQTP----- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~--f~~-------------~~wv~v~~~~----- 220 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+ .+. ++. ....++++.+
T Consensus 15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 35666666667777 9999999999999999999876542 110 100 0011222221
Q ss_pred -CH----------------------HHHHHHHHHHhCCCCCC------CCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 221 -SI----------------------TKIQDEIAGWLGIKELP------DND-ELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 221 -~~----------------------~~~~~~i~~~l~~~~~~------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
+. ......+++.+++.... ..+ .+...-.+.+.|..++-+++||++.+..
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 00 11233456666664221 112 2344567888888899999999998774
Q ss_pred h------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 271 E------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 271 ~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
| +..+.......|..||++||+.+.+..++++.+.|
T Consensus 173 D~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 173 TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence 4 22222222334778999999999887777766444
No 210
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=2e-07 Score=82.79 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----C--CCe------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----M--FDE------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+++...+.. . ++. ....++++.+
T Consensus 22 ~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 22 ALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 4555555556677 999999999999999999998764321 0 000 0011222221
Q ss_pred -CHH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 -SIT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 -~~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
++. .....+++.+++... ...+ .+.....+...|..++-+++||++.+..|..
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 110 112334555555321 1112 3344567888888999999999998775422
Q ss_pred ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEe
Q 046889 274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
.+..... ..|..||++||+..... .+++.+.
T Consensus 180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~ 215 (282)
T PRK13640 180 EQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLV 215 (282)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEE
Confidence 2222222 23778999999998875 4555433
No 211
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.62 E-value=6e-08 Score=84.82 Aligned_cols=140 Identities=13% Similarity=0.196 Sum_probs=82.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------C---C--------eEEEEEeCCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------F---D--------EVAMAVVSQTP 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------f---~--------~~~wv~v~~~~ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... . . ......+++.+
T Consensus 18 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 18 GCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred EeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 4555666666777 9999999999999999999876532110 0 0 00011222221
Q ss_pred --------CH-------------------HHHHHHHHHHhCCCC-CC-----CCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 221 --------SI-------------------TKIQDEIAGWLGIKE-LP-----DND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 221 --------~~-------------------~~~~~~i~~~l~~~~-~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
.. ......+++.+++.. .. ..+ .+.....+.+.+..++-+++||++
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00 011223445555521 11 112 234566788888899999999999
Q ss_pred CCchhhh------hccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 267 WVQIELD------RVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 267 ~~~~~~~------~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..|.. .+.... ...|..||++||+.+.+..++++.+.+
T Consensus 176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l 222 (253)
T TIGR02323 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM 222 (253)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 8775422 221222 223778999999999877666665433
No 212
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1.4e-07 Score=83.67 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE------------EEEEeCCCC-------C-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV------------AMAVVSQTP-------S- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~------------~wv~v~~~~-------~- 221 (333)
.++.+...+.+|+ +++|+|++|+|||||++.+++...+... |+.. ....+.+.+ +
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 22 TLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 4555555556677 9999999999999999999977543211 0000 011222221 0
Q ss_pred --------------H---HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-----
Q 046889 222 --------------I---TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----- 273 (333)
Q Consensus 222 --------------~---~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----- 273 (333)
. ......+++.+++... ...+ .+.....+.+.|..++-+++||++.+..|..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 0 1122344555555321 1122 3445667888889999999999998775432
Q ss_pred -hccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889 274 -RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 274 -~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
.+...... .|..||++||+.+... .+++.+
T Consensus 180 ~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~ 211 (279)
T PRK13650 180 IKTIKGIRDDYQMTVISITHDLDEVA-LSDRVL 211 (279)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE
Confidence 22222222 3788999999998874 455543
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.62 E-value=5.9e-08 Score=93.30 Aligned_cols=139 Identities=16% Similarity=0.273 Sum_probs=84.4
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC---------
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP--------- 220 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~--------- 220 (333)
++.+...+..++ +++|+|+||+|||||++.+.+..++.. .++. ....++++.+
T Consensus 268 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 268 VNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred cccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 555555556677 999999999999999999987643211 0100 0012233321
Q ss_pred CH------------------------HHHHHHHHHHhCCC-CCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889 221 SI------------------------TKIQDEIAGWLGIK-ELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQ 269 (333)
Q Consensus 221 ~~------------------------~~~~~~i~~~l~~~-~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (333)
+. ......+++.+++. ..... + .+...-.+...+..++-+++||++.+.
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 01 11233456666662 21121 1 344566788888889999999999877
Q ss_pred hhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 270 IEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 270 ~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|. ..+.......|..||++||+.+.+..+++..+.+
T Consensus 426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM 468 (501)
T ss_pred CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 542 2222222334778999999999887777766433
No 214
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.62 E-value=4.1e-08 Score=82.57 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ....++++.. +..
T Consensus 15 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 15 LFEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence 4445555566677 9999999999999999999876532210 000 0112233221 111
Q ss_pred -------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889 224 -------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP 278 (333)
Q Consensus 224 -------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~ 278 (333)
.....+++.+++...... + .+...-.+.+.+..++-+++||++.+..|.. .+...
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 93 NLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172 (198)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 112334455555321111 1 2334556888888899999999998775422 22222
Q ss_pred CCCCCcEEEEeeCChH
Q 046889 279 YGNDGCKFLLTSRSRA 294 (333)
Q Consensus 279 ~~~~g~~vivTTr~~~ 294 (333)
....|..||++||+..
T Consensus 173 ~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 173 HLARGGIVLLTTHQDL 188 (198)
T ss_pred HHhCCCEEEEEEcccc
Confidence 2234678999999874
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=5.2e-08 Score=93.66 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~------~ 221 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+... |.. ....++.+.+ +
T Consensus 18 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 18 KALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 35566666666777 9999999999999999999876532110 000 0011122211 0
Q ss_pred H---------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889 222 I---------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-- 272 (333)
Q Consensus 222 ~---------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-- 272 (333)
. ..-...+++.+++..... .+ .+.....+.+.|..++-+++||++.+..|.
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 0 112334566666642211 12 334456688888889999999999877542
Q ss_pred ----hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
..+.......|..||++||+...+..++++.+
T Consensus 176 ~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~ 211 (501)
T PRK11288 176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAIT 211 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 22222223347789999999998777666553
No 216
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=4e-08 Score=87.30 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------ 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------ 220 (333)
..++.+...+..|+ +++|+|++|+|||||++.+.+...+... ++. ....++++.+
T Consensus 20 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 20 HALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 35666666677788 9999999999999999999977543210 000 0112223322
Q ss_pred -CH------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 221 -SI------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 221 -~~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
+. ......+++.+++... ...+ .+.....+.+.|..++-+++||++.+..|..
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 00 0112333444554311 1122 3444566888888899999999998775422
Q ss_pred ----hccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889 274 ----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 274 ----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
.+...... .|..||++||+.+.+..++++.+
T Consensus 178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~ 213 (283)
T PRK13636 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF 213 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 22222222 37789999999998776666653
No 217
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.62 E-value=6.8e-08 Score=93.01 Aligned_cols=138 Identities=16% Similarity=0.279 Sum_probs=84.2
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC---------
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP--------- 220 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~--------- 220 (333)
++.+...+..++ +++|+|+||+|||||++.+.+..++.. .|+. ....++++.+
T Consensus 279 l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 279 FRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred ccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 555655556677 999999999999999999987643211 0000 0112233221
Q ss_pred CH---------------------HHHHHHHHHHhCCC-CCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 SI---------------------TKIQDEIAGWLGIK-ELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 ~~---------------------~~~~~~i~~~l~~~-~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+. ......+++.+++. ..... ..+...-.|...+..++-+|+||++.+..|.
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 11 01123456666663 21111 2344566788888889999999999877542
Q ss_pred h------hccCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889 273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
. .+.......|..||++||+.+.+..++++.+.
T Consensus 437 ~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~ 475 (510)
T PRK15439 437 SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV 475 (510)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 2 22222223477899999999988877766643
No 218
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.61 E-value=8.4e-08 Score=80.68 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=90.6
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------------------
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------------- 206 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------------- 206 (333)
.++.+..+..|.=.+..++ --.|+|+||+|||||++.+.....+..
T Consensus 40 ~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~ 117 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHE 117 (257)
T ss_pred EECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHh
Confidence 3456677777777777777 688999999999999999986654311
Q ss_pred CCCe-------EE--EE-E--eCC-CCCH--HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeC
Q 046889 207 MFDE-------VA--MA-V--VSQ-TPSI--TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 207 ~f~~-------~~--wv-~--v~~-~~~~--~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
+|.. +. |. + +.+ ..+. ......+++.++.....+. + -+.....+.+.|-.++-|||||+
T Consensus 118 ~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDE 197 (257)
T COG1119 118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE 197 (257)
T ss_pred hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecC
Confidence 1110 00 00 0 011 1121 2345567777776533222 2 23445678899999999999999
Q ss_pred CCCchhhhhc--------cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIELDRV--------GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~~~l--------~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..|+... ..+....+..+|++||..+-+..+-++...+
T Consensus 198 P~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll 246 (257)
T COG1119 198 PAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246 (257)
T ss_pred ccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEe
Confidence 9877553322 1222333667899999887766666655433
No 219
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=1.5e-07 Score=84.94 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------------------EE
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------------------VA 212 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------------------~~ 212 (333)
..++.+...+..|+ +++|+|++|+|||||++.+.+...+... ++. ..
T Consensus 40 ~~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 40 VALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 36677777677777 9999999999999999999976543211 000 00
Q ss_pred EEEeCCCC-------CH------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceE
Q 046889 213 MAVVSQTP-------SI------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVL 260 (333)
Q Consensus 213 wv~v~~~~-------~~------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~L 260 (333)
...+++.+ +. ......+++.+++. ... ..+ .+..+..|.+.|..++-+
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 11223321 00 01123345555553 111 112 344566788889999999
Q ss_pred EEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 261 VILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 261 lVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|+||++.+..|.. .+.......|..||++||+.+.+..++++.+.|
T Consensus 198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999998775422 222222234778999999998766666665433
No 220
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.61 E-value=6.9e-07 Score=81.16 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=87.4
Q ss_pred ccccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD 227 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 227 (333)
|.....|+|++..++.+...+.. .....+.|+||.|+||||||+.+.+..... + .+...+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 44567899999999888776642 334578899999999999999999877521 1 1111111 11112223
Q ss_pred HHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcc-
Q 046889 228 EIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQ- 300 (333)
Q Consensus 228 ~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~- 300 (333)
.++..++... ....+ ......+...+.+.+..+++|+..+...+... +| ..+-|..||+...+...+.
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~-l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRLD-LP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceeec-CC---CceEEeecCCcccCCHHHHH
Confidence 3333332110 00000 11122234444445555555554433222211 11 1344555666443322221
Q ss_pred --cceEecCCCCHHHHHHHHHhhccc
Q 046889 301 --AHIVDVRTLTEEESWRSAEGKRRV 324 (333)
Q Consensus 301 --~~~~~l~~L~~~e~~~lf~~~a~~ 324 (333)
...+.++++++++..+++.+.+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 223899999999999999987643
No 221
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.61 E-value=7.4e-08 Score=90.55 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCeE----------------------EEEEeCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MFDEV----------------------AMAVVSQTP 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~----------------------~wv~v~~~~ 220 (333)
..+++++..+..|+ +++|+|.+|+||||++..+.+...... ..... ....+.|.+
T Consensus 23 ~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 23 PAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred eeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence 46677777788888 999999999999999999987754331 01111 112333332
Q ss_pred ----C-----------------------HHHHHHHHHHHhCCCCCCCC--------CHHHHHHHHHHHHccCceEEEEeC
Q 046889 221 ----S-----------------------ITKIQDEIAGWLGIKELPDN--------DELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 221 ----~-----------------------~~~~~~~i~~~l~~~~~~~~--------~~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
+ ......++++++++++.... .-+.+...+...|..++-|||+|+
T Consensus 101 ~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE 180 (539)
T COG1123 101 MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180 (539)
T ss_pred hhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC
Confidence 1 11222345555565422111 134456778899999999999999
Q ss_pred CCCchh------hhhccC-CCCCCCcEEEEeeCChHHHhhcccceEecC---CCCHHHHHHHHH
Q 046889 266 LWVQIE------LDRVGI-PYGNDGCKFLLTSRSRAACNQMQAHIVDVR---TLTEEESWRSAE 319 (333)
Q Consensus 266 v~~~~~------~~~l~~-~~~~~g~~vivTTr~~~v~~~~~~~~~~l~---~L~~~e~~~lf~ 319 (333)
+.+..| +-.+.. .....|..+|++||+..+...++++.+.|. -.....+.++|.
T Consensus 181 PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 987644 222211 123458899999999999988888874332 233344444444
No 222
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.1e-07 Score=79.34 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=81.9
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CH----
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SI---- 222 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~---- 222 (333)
++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ ......+++.+ +.
T Consensus 15 l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 15 LKNVSLEVERGD--YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 444444455667 9999999999999999999876543221 00 00112222221 11
Q ss_pred --------------HHHHHHHHHHhCCCCC-----CC-CCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhcc
Q 046889 223 --------------TKIQDEIAGWLGIKEL-----PD-NDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVG 276 (333)
Q Consensus 223 --------------~~~~~~i~~~l~~~~~-----~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~ 276 (333)
......+++.+++... .. ...+.....+.+.+..++-+++||++.+..| +..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 172 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 0112234555554311 11 2234456678888888999999999987644 22221
Q ss_pred CCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 277 IPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 277 ~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.... ..|..||++||+...+..++++.+.+
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADKVAIM 203 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 2222 23788999999999877666666433
No 223
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=8.2e-08 Score=80.78 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC----eEEEE-EeCCCCCH-----------------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD----EVAMA-VVSQTPSI----------------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv-~v~~~~~~----------------- 222 (333)
.++++...+..++ .++|+|.||+|||||.+.+.+-.++....- .+.|. .++..+++
T Consensus 42 aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 42 ALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 4556666667788 899999999999999999998877654321 12221 11222211
Q ss_pred -----HHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHHccCceEEEEeCCCCchh--hh----hccCCCCCCCcE
Q 046889 223 -----TKIQDEIAGWLGIKELPDNDELV------RASLLCKRIEKQRVLVILDDLWVQIE--LD----RVGIPYGNDGCK 285 (333)
Q Consensus 223 -----~~~~~~i~~~l~~~~~~~~~~~~------~~~~l~~~l~~k~~LlVlDdv~~~~~--~~----~l~~~~~~~g~~ 285 (333)
.....+|.+--.+.+.-..+... .+-.+.-....++-+|++|++-..-| +. .....+...+..
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~t 199 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCE
Confidence 11222332222222222222111 11122222334778999998865522 11 111223233577
Q ss_pred EEEeeCChHHHhhcccceEecCCC------CHHHHHHHHHhhc
Q 046889 286 FLLTSRSRAACNQMQAHIVDVRTL------TEEESWRSAEGKR 322 (333)
Q Consensus 286 vivTTr~~~v~~~~~~~~~~l~~L------~~~e~~~lf~~~a 322 (333)
||++||+......+|+..+.++.= +.++....+....
T Consensus 200 iv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred EEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHhh
Confidence 999999999988888887655542 5666666665543
No 224
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.1e-07 Score=86.21 Aligned_cols=137 Identities=20% Similarity=0.315 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----h-c--CCCe----------------EEEEEeCCCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----K-K--MFDE----------------VAMAVVSQTPS 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~-~--~f~~----------------~~wv~v~~~~~ 221 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.... . + .|+. .....+.|.+.
T Consensus 22 ~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 22 AVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 4566666666777 9999999999999999999877531 1 1 0100 01122333321
Q ss_pred --------HH------------------------HHHHHHHHHhCCCCCC--------CCC-HHHHHHHHHHHHccCceE
Q 046889 222 --------IT------------------------KIQDEIAGWLGIKELP--------DND-ELVRASLLCKRIEKQRVL 260 (333)
Q Consensus 222 --------~~------------------------~~~~~i~~~l~~~~~~--------~~~-~~~~~~~l~~~l~~k~~L 260 (333)
+. ....++++.+++.+.. ..+ .+.....|...|..++-+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 00 1123445555553210 112 334456688888899999
Q ss_pred EEEeCCCCchh------hhhccCCCCC-CCcEEEEeeCChHHHhhcccce
Q 046889 261 VILDDLWVQIE------LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 261 lVlDdv~~~~~------~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~ 303 (333)
||+|++.+..| +..+...... .|..||++||+...+..++++.
T Consensus 180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 99999987644 2222222222 3788999999999987777665
No 225
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=9.6e-08 Score=83.67 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------C---C--------C----eEEEEEeCC
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------M---F--------D----EVAMAVVSQ 218 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~---f--------~----~~~wv~v~~ 218 (333)
+|....++.+...+.+++ +++|+|++|+|||||++.+.+...+.. . | . .....++++
T Consensus 20 ~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 20 INDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred cCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence 344456666666666777 999999999999999999997654321 0 0 0 001122333
Q ss_pred CC------CHHH-------------------HHHHHHHHhCCCC----C-----CCCC-HHHHHHHHHHHHccCceEEEE
Q 046889 219 TP------SITK-------------------IQDEIAGWLGIKE----L-----PDND-ELVRASLLCKRIEKQRVLVIL 263 (333)
Q Consensus 219 ~~------~~~~-------------------~~~~i~~~l~~~~----~-----~~~~-~~~~~~~l~~~l~~k~~LlVl 263 (333)
.+ +..+ ....+++.+++.. . ...+ .+.....+.+.+..++-+++|
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llll 177 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLM 177 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 21 1110 1122334444421 0 1111 234456688888889999999
Q ss_pred eCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 264 DDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 264 Ddv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|++.+..|.. .+..... .++.||++||+...+..++++.+.+
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 178 DEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred cCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEEEE
Confidence 9998764422 2222222 2578999999999887766666444
No 226
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=2.7e-07 Score=91.22 Aligned_cols=144 Identities=16% Similarity=0.332 Sum_probs=85.6
Q ss_pred ccccccccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCHHHHHHH
Q 046889 153 SEGFYNFKSRESTMK---DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-PSITKIQDE 228 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~ 228 (333)
|.....++|.+..+. .+...+..++...+.++||+|+||||||+.+.+... .+| +.+... ....+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f-----~~lna~~~~i~d---- 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF-----SSLNAVLAGVKD---- 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc-----eeehhhhhhhHH----
Confidence 445567889888774 566666677777789999999999999999997653 233 111110 00010
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH--ccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChH--HHhhcc
Q 046889 229 IAGWLGIKELPDNDELVRASLLCKRI--EKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRA--ACNQMQ 300 (333)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~--v~~~~~ 300 (333)
...........+ .+++.+|+|||++.. .....+ ++.-..|+.+++ ||.+.. +...+.
T Consensus 93 --------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 --------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred --------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhh
Confidence 111111122222 235679999999743 334444 333334554554 344542 222222
Q ss_pred c--ceEecCCCCHHHHHHHHHhhc
Q 046889 301 A--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 301 ~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
+ ..+.+++|+.++...++.+.+
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHH
Confidence 2 238999999999999998765
No 227
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=4e-08 Score=86.86 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTPS------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~~------- 221 (333)
.++.+...+..|+ +++|+|+||+|||||++.+++..++... ++. .....+++.+.
T Consensus 17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 4555666666777 9999999999999999999977543211 000 00111222210
Q ss_pred H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889 222 I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------ 271 (333)
Q Consensus 222 ~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------ 271 (333)
. ......+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0 1112334444554311 1122 34445668888889999999999987644
Q ss_pred hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 272 LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 ~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+..+.......|..||++||+.+.+. .+++.
T Consensus 175 l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v 205 (274)
T PRK13644 175 VLERIKKLHEKGKTIVYITHNLEELH-DADRI 205 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHh-hCCEE
Confidence 22222222334788999999999875 35554
No 228
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.5e-07 Score=82.36 Aligned_cols=140 Identities=11% Similarity=0.190 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC--CCe--------------EEEEEeCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM--FDE--------------VAMAVVSQTP- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~--f~~--------------~~wv~v~~~~- 220 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+. +. ++. .....+++.+
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 18 HVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 45666666677777 99999999999999999998775421 10 000 0011222221
Q ss_pred -----CHHH--------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 221 -----SITK--------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 221 -----~~~~--------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
+..+ ....+++.+++.. ....+ .+.....+.+.+..++-+++||+
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1110 1122333333310 01111 23345567788888999999999
Q ss_pred CCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..| +..+...... +..||++||+......++++.+.+
T Consensus 176 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 176 PTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEE
Confidence 987644 2222222222 567999999999877766666444
No 229
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.60 E-value=6.5e-08 Score=95.50 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC-------CHHH----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP-------SITK---- 224 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~-------~~~~---- 224 (333)
+|....++.+...+..++ +++|+|+||+|||||++.+++...+... +.. ....++++.. ++.+
T Consensus 329 ~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~ 406 (635)
T PRK11147 329 IDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAE 406 (635)
T ss_pred ECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHh
Confidence 344446667766666777 9999999999999999999987543221 111 1122333321 1111
Q ss_pred ------------HHHHHHHHhCCCC------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCC
Q 046889 225 ------------IQDEIAGWLGIKE------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGND 282 (333)
Q Consensus 225 ------------~~~~i~~~l~~~~------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~ 282 (333)
-...++..++... ....+ .+...-.+...+..++-+|+||++.+..|.... .-.+...
T Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 486 (635)
T PRK11147 407 GKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY 486 (635)
T ss_pred hcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence 1123344444421 01112 233455677888889999999999988653322 1111111
Q ss_pred CcEEEEeeCChHHHhhcccceEec
Q 046889 283 GCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..||++||+...+..+++..+.+
T Consensus 487 ~~tvi~vSHd~~~~~~~~d~i~~l 510 (635)
T PRK11147 487 QGTVLLVSHDRQFVDNTVTECWIF 510 (635)
T ss_pred CCeEEEEECCHHHHHHhcCEEEEE
Confidence 346999999999988877776555
No 230
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.2e-07 Score=83.18 Aligned_cols=138 Identities=18% Similarity=0.314 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-hhc-------CCCeE----------------EEEEeCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKK-------MFDEV----------------AMAVVSQT 219 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~-------~f~~~----------------~wv~v~~~ 219 (333)
..++.+...+..++ +++|+|.+|+||||+++.+..... ... .|+.. -...+.|+
T Consensus 19 ~av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 19 KAVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 35556666677778 999999999999999999998764 111 12111 11233343
Q ss_pred C----C----H--------------------HHHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHHccCceEEE
Q 046889 220 P----S----I--------------------TKIQDEIAGWLGIKEL---------PDNDELVRASLLCKRIEKQRVLVI 262 (333)
Q Consensus 220 ~----~----~--------------------~~~~~~i~~~l~~~~~---------~~~~~~~~~~~l~~~l~~k~~LlV 262 (333)
+ + + .+...++++.+++++. .-+.-..++..+.-.+..++-|||
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 2 1 0 1122334455555321 111233455677888888999999
Q ss_pred EeCCCCchh------hhhccCCC-CCCCcEEEEeeCChHHHhhcccce
Q 046889 263 LDDLWVQIE------LDRVGIPY-GNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 263 lDdv~~~~~------~~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
.|++.+..| .-.+.-.+ ...|+.+|++|||..++..++++.
T Consensus 177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224 (316)
T ss_pred eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence 999987754 12221111 245899999999999988888766
No 231
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.2e-07 Score=81.29 Aligned_cols=140 Identities=10% Similarity=0.197 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----h-hcC--CC--------------eEEEEEeCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----E-KKM--FD--------------EVAMAVVSQTP- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~-~~~--f~--------------~~~wv~v~~~~- 220 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+... + .+. ++ .....++++.+
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 45666666667777 999999999999999999987532 0 110 00 00122233332
Q ss_pred ----CHHH-------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 221 ----SITK-------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 221 ----~~~~-------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+..+ ....+++.+++.. ....+ .+...-.+.+.+..++-+++||++.
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 1112233333311 11122 2344556788888899999999998
Q ss_pred Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..| +..+...... +..||++||+...+..++++.+.+
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 178 SALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEE
Confidence 7644 2222222222 568999999999877766766444
No 232
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=3e-07 Score=73.09 Aligned_cols=127 Identities=11% Similarity=0.171 Sum_probs=83.5
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------CCC--eEEEEE-----eCC---------
Q 046889 174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------MFD--EVAMAV-----VSQ--------- 218 (333)
Q Consensus 174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~--~~~wv~-----v~~--------- 218 (333)
..++ .++|+|++|+|||||.....+-....+ .|. .+-+|. ++.
T Consensus 34 ~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 34 KRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred cCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 3455 799999999999999988875433211 110 111111 111
Q ss_pred --------CCCHHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCc------hhhhhccCC
Q 046889 219 --------TPSITKIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQ------IELDRVGIP 278 (333)
Q Consensus 219 --------~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~ 278 (333)
..+.....+..+.++|+... .-..-+++.-.|.+.+...+-+|+-|++.-. ....++.+.
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ 191 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence 11334556778888887522 1123456677899999999999999998744 335555555
Q ss_pred CC-CCCcEEEEeeCChHHHhhcccc
Q 046889 279 YG-NDGCKFLLTSRSRAACNQMQAH 302 (333)
Q Consensus 279 ~~-~~g~~vivTTr~~~v~~~~~~~ 302 (333)
.. ..|+..+++||++.++.+|...
T Consensus 192 lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 192 LNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred HhhhcCceEEEEeCCHHHHHhhhhe
Confidence 43 4499999999999999887543
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.59 E-value=1.2e-07 Score=81.14 Aligned_cols=139 Identities=14% Similarity=0.197 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----HH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----IT- 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~~- 223 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |.. .....+++.+. ..
T Consensus 19 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 19 ALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 5556665566777 9999999999999999999976542210 000 00112233221 10
Q ss_pred -----------HHHHHHHHHhCCCC----C------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 224 -----------KIQDEIAGWLGIKE----L------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 224 -----------~~~~~i~~~l~~~~----~------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
.....++..+++.. . ...+ .+.....+.+.+..++-+++||++.+..|.
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 11122333333320 0 1222 234456677888888999999999876442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
..+...... +..||++||+.... .++++.+.+.
T Consensus 177 ~~l~~~l~~~~~-~~tii~~sH~~~~~-~~~d~v~~l~ 212 (220)
T cd03245 177 ERLKERLRQLLG-DKTLIIITHRPSLL-DLVDRIIVMD 212 (220)
T ss_pred HHHHHHHHHhcC-CCEEEEEeCCHHHH-HhCCEEEEEe
Confidence 222222223 36799999999876 4666655443
No 234
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=6.7e-07 Score=76.74 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 241 (333)
....++.+..++.......+.|+|+.|+|||+||+.+++..... ....+++.++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~------~~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELA------QAD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHH------HhH------------
Confidence 45577777777655555689999999999999999999876532 2233444332211 000
Q ss_pred CHHHHHHHHHHHHccCceEEEEeCCCCch---hh-hhcc---CCCCCCCcEEEEeeCChH---------HHhhcc-cceE
Q 046889 242 DELVRASLLCKRIEKQRVLVILDDLWVQI---EL-DRVG---IPYGNDGCKFLLTSRSRA---------ACNQMQ-AHIV 304 (333)
Q Consensus 242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~---~~~~~~g~~vivTTr~~~---------v~~~~~-~~~~ 304 (333)
..+...+. +..+||+||+.... .| ..+. ......+..+|+||+... +...+. ...+
T Consensus 82 ------~~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 ------PEVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred ------HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01111222 23489999997542 11 1121 111123457888887432 222333 2348
Q ss_pred ecCCCCHHHHHHHHHhhc
Q 046889 305 DVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 305 ~l~~L~~~e~~~lf~~~a 322 (333)
.+.++++++...++.+.+
T Consensus 155 ~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRA 172 (226)
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 999999999999988653
No 235
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.59 E-value=9.4e-08 Score=84.17 Aligned_cols=140 Identities=15% Similarity=0.284 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+
T Consensus 26 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 26 VLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred EeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 4566666667788 9999999999999999999877543210 00 00011222221
Q ss_pred --CHH-------------------HHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 --SIT-------------------KIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 --~~~-------------------~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.. .....+++.+++. .... .+ .+.....+.+.+..++-+++||++.+..|.
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 111 1123445555552 1111 11 234456688888889999999999876542
Q ss_pred h------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. .+...... .|..||++||+...+..++++.+.+
T Consensus 184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence 2 22222222 3778999999999887766665433
No 236
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=6.3e-08 Score=85.95 Aligned_cols=137 Identities=17% Similarity=0.212 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTPS------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~~------- 221 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+...+... ++ ......+++.+.
T Consensus 25 vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 25 ALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 5566666666777 9999999999999999999876543210 00 000112222210
Q ss_pred H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889 222 I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------ 271 (333)
Q Consensus 222 ~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------ 271 (333)
. ......+++.+++... ...+ .+.....|...|..++-+++||++.+..|
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0 1122344445554321 1112 33445668888889999999999987644
Q ss_pred hhhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889 272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+..... ..|..||++||+.+.+.. +++.+
T Consensus 183 l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~ 215 (280)
T PRK13633 183 VVNTIKELNKKYGITIILITHYMEEAVE-ADRII 215 (280)
T ss_pred HHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEE
Confidence 222222222 247889999999998765 45443
No 237
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=1.7e-07 Score=81.95 Aligned_cols=141 Identities=11% Similarity=0.210 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC--CCe--------------EEEEEeCCCC
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM--FDE--------------VAMAVVSQTP 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~--f~~--------------~~wv~v~~~~ 220 (333)
...++.+...+..++ +++|+|++|+|||||++.+.+..... +. ++. ....++++.+
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 20 FKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred ceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 346677777777788 99999999999999999998765421 10 000 0012223322
Q ss_pred C-----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 221 S-----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 221 ~-----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
. .. .....+++.++.. .....+ .+.....+.+.|..++-+++||++
T Consensus 98 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 177 (254)
T PRK14273 98 NPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177 (254)
T ss_pred ccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 11 1112222333320 011112 234455677888888899999999
Q ss_pred CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..| +..+..... .+..||++||+...+..++++.+.|
T Consensus 178 t~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 178 TSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFF 222 (254)
T ss_pred CcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 87644 222222222 3578999999999887777766444
No 238
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=2.9e-07 Score=82.13 Aligned_cols=140 Identities=12% Similarity=0.177 Sum_probs=82.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------------EEEEEeCCCCC--H
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------------VAMAVVSQTPS--I 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------------~~wv~v~~~~~--~ 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+. .
T Consensus 26 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 4555665566777 9999999999999999999876543210 000 01122333320 0
Q ss_pred --HHH---------------------HHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 223 --TKI---------------------QDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 223 --~~~---------------------~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
..+ ...+++.+++. ... ..+ .+.....+.+.|..++-+++||++.+..|.
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 011 12334444442 111 112 233455677888888999999999876442
Q ss_pred h------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. .+..... ..|..||++||+.+.+..++++.+.+
T Consensus 184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l 224 (289)
T PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224 (289)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 2 2212222 23778999999999877766666444
No 239
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=8.8e-08 Score=86.70 Aligned_cols=137 Identities=16% Similarity=0.267 Sum_probs=84.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----h-c--CCCe----------------EEEEEeCCCC-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----K-K--MFDE----------------VAMAVVSQTP- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~-~--~f~~----------------~~wv~v~~~~- 220 (333)
.++++...+..++ +++|+|++|+|||||++.+.+.... . + .|+. .....+.|.+
T Consensus 22 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 22 AVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4566666667787 9999999999999999999987541 1 0 0100 0112233332
Q ss_pred -------CHH-------------------HHHHHHHHHhCCCCC--------CCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 221 -------SIT-------------------KIQDEIAGWLGIKEL--------PDND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 221 -------~~~-------------------~~~~~i~~~l~~~~~--------~~~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
... ....++++.+++.+. ...+ .+.+...|...|..++-+||+|+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 111 112344555565321 1111 23445668888888999999999
Q ss_pred CCCchh------hhhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889 266 LWVQIE------LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 266 v~~~~~------~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+.+..| +..+..... ..|..||++||+...+..++++.
T Consensus 180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 987754 222222222 24778999999999887777766
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.58 E-value=1.6e-07 Score=90.28 Aligned_cols=142 Identities=16% Similarity=0.255 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hc--CCCe-------------EEEEEeCCCC-----
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KK--MFDE-------------VAMAVVSQTP----- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~--~f~~-------------~~wv~v~~~~----- 220 (333)
...++.+...+..++ +++|+|+||+|||||++.+.+..++ .+ .|.. .....+++.+
T Consensus 273 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l 350 (500)
T TIGR02633 273 RKRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGI 350 (500)
T ss_pred ccccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCc
Confidence 346777777777777 9999999999999999999876541 11 0000 0001111110
Q ss_pred ------------------------C---HHHHHHHHHHHhCCCC-CCC-----CC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 221 ------------------------S---ITKIQDEIAGWLGIKE-LPD-----ND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 221 ------------------------~---~~~~~~~i~~~l~~~~-~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
. .......+++.+++.. ... .+ -+.....+.+.+..++-+++||++
T Consensus 351 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 430 (500)
T TIGR02633 351 VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP 430 (500)
T ss_pred CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 0 0112345666676631 111 12 344566788888889999999999
Q ss_pred CCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 267 WVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 267 ~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..|... +.......|..||++||+.+.+..++++.+.+
T Consensus 431 t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred CCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 87755322 21222334777999999999887777766443
No 241
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.58 E-value=1.2e-06 Score=79.94 Aligned_cols=168 Identities=14% Similarity=0.200 Sum_probs=89.5
Q ss_pred ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC-eEEEEEeCCCCCH-HHHH-H--
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD-EVAMAVVSQTPSI-TKIQ-D-- 227 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~-~~~~-~-- 227 (333)
|.....++|++..++.|..++..+..+.+.++||.|+||||+|+.+.+..... .+. ..+.+.++..... ...+ .
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 44456788999999999999888776678899999999999999998776421 221 1223332211000 0000 0
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHH-HH---H--ccCceEEEEeCCCCch--h---hhhccCCCCCCCcEEEEeeCChH-H
Q 046889 228 EIAGWLGIKELPDNDELVRASLLC-KR---I--EKQRVLVILDDLWVQI--E---LDRVGIPYGNDGCKFLLTSRSRA-A 295 (333)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~-~~---l--~~k~~LlVlDdv~~~~--~---~~~l~~~~~~~g~~vivTTr~~~-v 295 (333)
.....++...............+. .. . ...+.+||+||+.... . +..+ +......+++|+||.+.. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~-le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI-MEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH-HHhccCCCeEEEEeCChhhC
Confidence 000000000000000111111111 11 1 1345689999986442 1 2222 111223567777776543 2
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+.+.+++.++...++.+.+
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 2223333 28889999999888888764
No 242
>PLN03211 ABC transporter G-25; Provisional
Probab=98.58 E-value=1.2e-07 Score=93.67 Aligned_cols=163 Identities=12% Similarity=0.153 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh---cC--CCe--------EEEEEeCCCC------C
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK---KM--FDE--------VAMAVVSQTP------S 221 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~--f~~--------~~wv~v~~~~------~ 221 (333)
+....++++...+.+|+ +++|+|++|+|||||++.+.+..+.. +. ++. ....++.|.. +
T Consensus 79 ~~~~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 79 QERTILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CCCeeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCC
Confidence 33445556655566667 99999999999999999999875431 10 000 0012233321 1
Q ss_pred H---------------------HHHHHHHHHHhCCCCCC----------CCC-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889 222 I---------------------TKIQDEIAGWLGIKELP----------DND-ELVRASLLCKRIEKQRVLVILDDLWVQ 269 (333)
Q Consensus 222 ~---------------------~~~~~~i~~~l~~~~~~----------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (333)
+ ......+++.+++.... ..+ .+..+-.+...|..++-+++||++.+.
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 1 11234456666664211 112 344556678888888999999999877
Q ss_pred hh------hhhccCCCCCCCcEEEEeeCChHH-HhhcccceEecC------CCCHHHHHHHHHhhcccC
Q 046889 270 IE------LDRVGIPYGNDGCKFLLTSRSRAA-CNQMQAHIVDVR------TLTEEESWRSAEGKRRVC 325 (333)
Q Consensus 270 ~~------~~~l~~~~~~~g~~vivTTr~~~v-~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~~ 325 (333)
.| +..+.......|..||+|||+... ...+.+..+.|. .-+.++....|....+.+
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~ 305 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSP 305 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCC
Confidence 54 222222223347889999999862 334444443332 235688888888775543
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.58 E-value=1.3e-07 Score=81.27 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH---hhcC---CC---------eEEEEEeCCCC------CH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK---EKKM---FD---------EVAMAVVSQTP------SI 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~~~---f~---------~~~wv~v~~~~------~~ 222 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+... +... ++ ......+++.+ +.
T Consensus 21 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 21 RILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 34555555556676 999999999999999999987764 2210 00 00112233322 11
Q ss_pred HHH---------------------HHH-HHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889 223 TKI---------------------QDE-IAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE--- 271 (333)
Q Consensus 223 ~~~---------------------~~~-i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 271 (333)
.+. ... +++.++.... ...+ .+...-.+.+.+...+-+++||++.+..|
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 110 011 3333333211 1112 23344557778888889999999987644
Q ss_pred ---hhhccCCCCCCCcEEEEeeCCh-HHHhhcccceEec
Q 046889 272 ---LDRVGIPYGNDGCKFLLTSRSR-AACNQMQAHIVDV 306 (333)
Q Consensus 272 ---~~~l~~~~~~~g~~vivTTr~~-~v~~~~~~~~~~l 306 (333)
+..+.......|..||++||+. ..+..++++.+.+
T Consensus 179 ~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 2222222223377899999997 4555566665444
No 244
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.57 E-value=1.4e-06 Score=85.22 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=98.0
Q ss_pred ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC---eEEEEEeCCC---CCHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD---EVAMAVVSQT---PSITKIQ 226 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~---~~~~~~~ 226 (333)
|.....++|++..+..+...+.......+.|+|++|+||||||+.+++.......+. ...|+.+... .+...+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 334556889999988888877666566899999999999999999998775433331 2234444321 1111111
Q ss_pred ---------------HHHHHHhCCC------------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hh
Q 046889 227 ---------------DEIAGWLGIK------------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IE 271 (333)
Q Consensus 227 ---------------~~i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~ 271 (333)
+..+...+.. ..... ....+..+.+.+.+++++++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1112222221 10111 123567788888888888886655543 22
Q ss_pred hhhccCCC--CCCCcEEEE--eeCChHH-Hhhcccc--eEecCCCCHHHHHHHHHhhcc
Q 046889 272 LDRVGIPY--GNDGCKFLL--TSRSRAA-CNQMQAH--IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 272 ~~~l~~~~--~~~g~~viv--TTr~~~v-~~~~~~~--~~~l~~L~~~e~~~lf~~~a~ 323 (333)
|..+...+ ......+++ ||++... ...+..+ .+.+.+++.++.+.++.+.+-
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 43332222 222333444 5554432 1122222 378899999999999998753
No 245
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=8.5e-08 Score=84.89 Aligned_cols=144 Identities=10% Similarity=0.169 Sum_probs=84.5
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC-------------eEEEEEeCC
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD-------------EVAMAVVSQ 218 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~-------------~~~wv~v~~ 218 (333)
++....++.+...+.+++ +++|+|++|+|||||++.+.+...+ .+. ++ .....++++
T Consensus 31 ~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 108 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQ 108 (276)
T ss_pred ECCEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEecc
Confidence 344456677777777778 9999999999999999999976542 110 00 001122333
Q ss_pred CCC-----HHH-------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889 219 TPS-----ITK-------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 219 ~~~-----~~~-------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlD 264 (333)
.+. ..+ ...++++.+++.. ....+ .+.....|.+.+...+-+++||
T Consensus 109 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD 188 (276)
T PRK14271 109 RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188 (276)
T ss_pred CCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 221 110 0122334444421 01112 3344556788888888999999
Q ss_pred CCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++.+..+.. .+...... +..||++||+......++++.+.+
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 189 EPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 998764422 22222222 468999999999877766665433
No 246
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.57 E-value=1.2e-08 Score=85.71 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=92.4
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------------CCCeEE
Q 046889 158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------MFDEVA 212 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------~f~~~~ 212 (333)
..||.-..++++...+..++ +++|+||||+|||||.+.+.+..++.. .|+...
T Consensus 12 k~FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred eecCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 34454455556666666677 999999999999999999987665432 111110
Q ss_pred -------------------------EEEeC--CCCCHHHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCce
Q 046889 213 -------------------------MAVVS--QTPSITKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRV 259 (333)
Q Consensus 213 -------------------------wv~v~--~~~~~~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~ 259 (333)
|.... ......+-...+++.+++...... + .++..-.|.+.|..++-
T Consensus 90 lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~ 169 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK 169 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC
Confidence 00000 000112233455666666522221 1 34456678999999999
Q ss_pred EEEEeCCCCc------hhhhhccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889 260 LVILDDLWVQ------IELDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 260 LlVlDdv~~~------~~~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
||+||++-.. .++..+...... .|..|+++-|+..+.-.++++.+.|.
T Consensus 170 lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~ 224 (250)
T COG0411 170 LLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN 224 (250)
T ss_pred EEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc
Confidence 9999998633 334444344444 36899999999999888888875553
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.57 E-value=6.1e-08 Score=91.09 Aligned_cols=138 Identities=15% Similarity=0.257 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP---- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~---- 220 (333)
..++++...+..|+ +++|||.+|+|||||++.+.+-..+... |.. +..+.-.+..
T Consensus 305 ~Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 305 KAVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 45667777777788 9999999999999999999977654221 100 0111111100
Q ss_pred --CH-------------------HHHHHHHHHHhCCCC-------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889 221 --SI-------------------TKIQDEIAGWLGIKE-------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE- 271 (333)
Q Consensus 221 --~~-------------------~~~~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 271 (333)
++ ......+++..+++. ..-+.-+.....+.+.|..++.+||+|++.+..|
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 11 112334455555541 1111234456779999999999999999987754
Q ss_pred -----hhhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889 272 -----LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 -----~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
.-.+...+. ..|..+|++||+..+.+.++++.
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceE
Confidence 222222222 23889999999999999998877
No 248
>PRK13409 putative ATPase RIL; Provisional
Probab=98.57 E-value=2.3e-07 Score=90.46 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=89.3
Q ss_pred ccccchH-HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh-cC-------------CCe-----------
Q 046889 157 YNFKSRE-STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK-KM-------------FDE----------- 210 (333)
Q Consensus 157 ~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-------------f~~----------- 210 (333)
.+-||.. -.+..+. .+..|+ +++|+|+||+|||||++.+.+...+. +. |..
T Consensus 80 ~~~yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 80 VHRYGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred eEEecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 3445543 3566666 566677 99999999999999999998765432 11 110
Q ss_pred -----EEE--EEeCCCC-----CH---------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEE
Q 046889 211 -----VAM--AVVSQTP-----SI---------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVIL 263 (333)
Q Consensus 211 -----~~w--v~v~~~~-----~~---------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVl 263 (333)
..+ -++.+.+ +. ......+++.+++.... ..+ .+...-.|...|..++-+++|
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllL 236 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFF 236 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 0111111 11 12234566666664221 122 344456788888899999999
Q ss_pred eCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 264 DDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 264 Ddv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|++.+..|.. .+...... |..||++||+...+..+++..+.+
T Consensus 237 DEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 237 DEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9998775532 22222234 778999999999988877766444
No 249
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.56 E-value=2e-06 Score=83.82 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=104.4
Q ss_pred ccccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCHHHHHHHH
Q 046889 151 SLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-PSITKIQDEI 229 (333)
Q Consensus 151 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i 229 (333)
..|......+-|....+.|.. ..+.+.+.|..|.|.|||||+-....... .=..+.|.++.+. .++..+++.+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHH
Confidence 334444566777776666554 34678999999999999999999887332 2246789998754 5677788888
Q ss_pred HHHhCCC--CC-----------CCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch------hhhhccCCCCCCCcEEEE
Q 046889 230 AGWLGIK--EL-----------PDNDELVRASLLCKRIEK--QRVLVILDDLWVQI------ELDRVGIPYGNDGCKFLL 288 (333)
Q Consensus 230 ~~~l~~~--~~-----------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~~~~~~g~~viv 288 (333)
+..++.- .. ...+...+...+..-|.. +++++||||..-.. .+..+ +.....+-..|+
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fL-l~~~P~~l~lvv 165 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFL-LKHAPENLTLVV 165 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHH-HHhCCCCeEEEE
Confidence 8887632 11 111122333344444443 68899999976432 23333 333334788999
Q ss_pred eeCChHHHhh----cccceEecC----CCCHHHHHHHHHhhc
Q 046889 289 TSRSRAACNQ----MQAHIVDVR----TLTEEESWRSAEGKR 322 (333)
Q Consensus 289 TTr~~~v~~~----~~~~~~~l~----~L~~~e~~~lf~~~a 322 (333)
|||+..-... +......+. .|+.+|+.++|....
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 9998864221 111113333 488999999999875
No 250
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.5e-07 Score=90.66 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP-------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~-------- 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+..++.. .|+. ....++++.+
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 5666666666677 999999999999999999986643211 0000 0011222210
Q ss_pred -CH---------------------------HHHHHHHHHHhCCC-CCCCC-----C-HHHHHHHHHHHHccCceEEEEeC
Q 046889 221 -SI---------------------------TKIQDEIAGWLGIK-ELPDN-----D-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 221 -~~---------------------------~~~~~~i~~~l~~~-~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
++ ......+++.+++. ..... + -+.....+...|..++-+++||+
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 00 01234566667663 22111 2 34456678888888999999999
Q ss_pred CCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..|.. .+.......|..||++||+...+..++++.+.+
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 98775522 222222234778999999998877777766444
No 251
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.56 E-value=2.1e-07 Score=89.45 Aligned_cols=140 Identities=17% Similarity=0.247 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP-------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~-------- 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+..++... ++. ....++++.+
T Consensus 268 ~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 4566665566677 9999999999999999999866432110 000 0011111110
Q ss_pred -CH------------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 221 -SI------------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 221 -~~------------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
+. ......++..+++. ... ..+ -+...-.+...+..++-+|+||++.+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 00 11234566666662 111 112 34456678888888999999999988
Q ss_pred chhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|... +.......|..||++||+.+.+..+++..+.+
T Consensus 426 ~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l 469 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM 469 (501)
T ss_pred CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence 755322 22222334778999999999988877776444
No 252
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.6e-07 Score=82.86 Aligned_cols=143 Identities=10% Similarity=0.218 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----h-hcC--CC--------------eEEEEEeCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----E-KKM--FD--------------EVAMAVVSQ 218 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~-~~~--f~--------------~~~wv~v~~ 218 (333)
+....++.+...+..|+ +++|+|++|+|||||++.+.+... + .+. +. .....++++
T Consensus 32 ~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 109 (268)
T PRK14248 32 GEKRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109 (268)
T ss_pred CCceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec
Confidence 43446667776677788 999999999999999999987532 1 110 00 001122333
Q ss_pred CCCH--HHH----------------------HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889 219 TPSI--TKI----------------------QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 219 ~~~~--~~~----------------------~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlD 264 (333)
.+.. ..+ ....+..++.. .....+ .+...-.+.+.+..++-+++||
T Consensus 110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 3210 011 11222223321 011112 2334556778888888999999
Q ss_pred CCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++.+..| +..+...... +..||++||+...+..++++.+.|
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEE
Confidence 9987644 2222222222 567999999999877766666444
No 253
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=6.5e-08 Score=85.44 Aligned_cols=137 Identities=12% Similarity=0.270 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C----eEEEEEeCCCC-------C
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D----EVAMAVVSQTP-------S 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~----~~~wv~v~~~~-------~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... + . .....++++.+ +
T Consensus 23 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 23 NALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 34566666666777 9999999999999999999977543210 0 0 00011222221 1
Q ss_pred HH------------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889 222 IT------------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---- 273 (333)
Q Consensus 222 ~~------------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---- 273 (333)
.. .....+++.+++.. ....+ .+.....+.+.|..++-+++||++.+..|..
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 10 11233445555431 11122 3344566888888899999999998775432
Q ss_pred --hccCCCCCC-CcEEEEeeCChHHHhhcccce
Q 046889 274 --RVGIPYGND-GCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 274 --~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~ 303 (333)
.+....... +..||++||+..... .+++.
T Consensus 181 l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v 212 (271)
T PRK13632 181 IKKIMVDLRKTRKKTLISITHDMDEAI-LADKV 212 (271)
T ss_pred HHHHHHHHHHhcCcEEEEEEechhHHh-hCCEE
Confidence 222222222 478999999988765 45544
No 254
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=2.9e-07 Score=73.75 Aligned_cols=145 Identities=13% Similarity=0.182 Sum_probs=93.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE---------------------
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV--------------------- 215 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~--------------------- 215 (333)
.+-||..+.++.+...-..++ ||+|+|.+|+||||++++|.-...+. ...+|+.
T Consensus 13 HK~~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred HhhcccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 445777788888876666677 99999999999999999997554322 1222321
Q ss_pred ----------eCCCCC-------------------------HHHHHHHHHHHhCCCCCC------CCCHHHHHHHHHHHH
Q 046889 216 ----------VSQTPS-------------------------ITKIQDEIAGWLGIKELP------DNDELVRASLLCKRI 254 (333)
Q Consensus 216 ----------v~~~~~-------------------------~~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l 254 (333)
+.|.++ ..+....++...|+.... -...++....|.+.|
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaL 167 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHH
Confidence 001111 111223344445543111 122355677899999
Q ss_pred ccCceEEEEeCCCCchhhhhc------cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 255 EKQRVLVILDDLWVQIELDRV------GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~~l------~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.-.+-++++|++.+..|-+-. ...+...|-..+++||...+|+.++++.+.|
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fL 225 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEe
Confidence 999999999999987552221 1223344778999999999999999988433
No 255
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.56 E-value=9.9e-08 Score=84.09 Aligned_cols=139 Identities=12% Similarity=0.187 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCCC-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTPS- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~~- 221 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+ .+. |+. ....++++.+.
T Consensus 34 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 34 ALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 4555555566777 9999999999999999999987532 110 000 01122333211
Q ss_pred ----HH--------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 ----IT--------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ----~~--------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+. .....+++.+++.. ....+ .+.....+.+.|..++-+++||++.
T Consensus 112 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 191 (267)
T PRK14235 112 FPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPC 191 (267)
T ss_pred CCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11 11123344444421 11112 3344566888888899999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|.. .+...... +..||++||+.+.+..++++.+.+
T Consensus 192 ~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 192 SALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred cCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEE
Confidence 764422 22122222 567999999999887776666444
No 256
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=2.2e-07 Score=79.93 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH--HHHH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI--TKIQ- 226 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~--~~~~- 226 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++ .....++++.+.. ..+.
T Consensus 18 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 18 VLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 5566666666777 8999999999999999999877543211 00 0001122332211 0111
Q ss_pred --------------HHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 227 --------------DEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 227 --------------~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
...+..++.. .....+ .+...-.|.+.|..++-+++||++.+..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1111111110 011222 33445678888889999999999987654
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... .|..||++||+...... +++.+.|
T Consensus 176 ~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l 210 (229)
T cd03254 176 KLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADKILVL 210 (229)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEE
Confidence 222222222 36789999999988764 5555444
No 257
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=2.2e-07 Score=81.51 Aligned_cols=139 Identities=10% Similarity=0.206 Sum_probs=80.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCCC-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTPS- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~~- 221 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.... .+. ++. ....++++.+.
T Consensus 27 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 27 ALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 4555555556677 8999999999999999999876531 111 000 01122333211
Q ss_pred ----HH-------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 222 ----IT-------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 222 ----~~-------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
.. .....+++.+++.. ....+ .+.....+.+.+..++-+++||++.+
T Consensus 105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 184 (259)
T PRK14274 105 FPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS 184 (259)
T ss_pred cccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10 01112333444311 11112 23445567888888999999999987
Q ss_pred chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..| +..+...... +..||++||+.+.+..++++.+.|
T Consensus 185 ~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 185 ALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred cCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 644 2222222223 567999999998877776766444
No 258
>PLN03073 ABC transporter F family; Provisional
Probab=98.56 E-value=1.4e-07 Score=93.81 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCC----CH-------------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTP----SI------------- 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~----~~------------- 222 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+... +. .....++++.. +.
T Consensus 523 ~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 523 LLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred eeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcC
Confidence 35666766666777 9999999999999999999987543221 00 00111222221 00
Q ss_pred ---HHHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCC-CCcEEEE
Q 046889 223 ---TKIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGN-DGCKFLL 288 (333)
Q Consensus 223 ---~~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~-~g~~viv 288 (333)
....+.++..+++.. . ...+ .+...-.+...+..++-+|+||++.+..|.... ...+.. .| .||+
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~g-tvIi 679 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG-GVLM 679 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-EEEE
Confidence 112344566666631 1 1122 344456688888899999999999987553322 101111 24 6999
Q ss_pred eeCChHHHhhcccceEec
Q 046889 289 TSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 289 TTr~~~v~~~~~~~~~~l 306 (333)
+||+...+..+++..+.+
T Consensus 680 vSHd~~~i~~~~drv~~l 697 (718)
T PLN03073 680 VSHDEHLISGSVDELWVV 697 (718)
T ss_pred EECCHHHHHHhCCEEEEE
Confidence 999999988877776544
No 259
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=5.9e-07 Score=79.27 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------C---------CeEEEEEeCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------F---------DEVAMAVVSQTP------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------f---------~~~~wv~v~~~~------- 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... . ....+ +++.+
T Consensus 24 ~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~--v~q~~~~~~~~~ 99 (269)
T PRK13648 24 TLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI--VFQNPDNQFVGS 99 (269)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE--EEeChHHhcccc
Confidence 4555555566777 9999999999999999999977543210 0 00112 22221
Q ss_pred CH------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 221 SI------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 221 ~~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
.. ......+++.+++... ...+ .+.....+.+.+..++-+++||++.+..|..
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 179 (269)
T PRK13648 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179 (269)
T ss_pred cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 00 0112344555555321 1122 3445567888888899999999998775422
Q ss_pred ---hccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889 274 ---RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 274 ---~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
.+..... ..|..||++||+...+.. +++.+
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~ 213 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAME-ADHVI 213 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEE
Confidence 2222222 237789999999987654 55543
No 260
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.7e-07 Score=81.91 Aligned_cols=139 Identities=12% Similarity=0.181 Sum_probs=81.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC------------CC----eEEEEEeCCCCCH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM------------FD----EVAMAVVSQTPSI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~------------f~----~~~wv~v~~~~~~ 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+. +. .. .....++++.+..
T Consensus 19 il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 19 VLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred EecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 4555555566777 89999999999999999998875432 10 00 0112223333210
Q ss_pred --HHH----------------------HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 223 --TKI----------------------QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 223 --~~~----------------------~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
..+ ...++..+++. .....+ .+.....+.+.+..++-+++||++.+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 176 (251)
T PRK14249 97 FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176 (251)
T ss_pred CcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 011 11112222221 111112 23445567788888999999999987
Q ss_pred chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..| +..+..... .+..||++||+......++++.+.+
T Consensus 177 ~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 177 ALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred cCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEE
Confidence 644 222222222 3678999999999887777766444
No 261
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.3e-07 Score=84.15 Aligned_cols=140 Identities=11% Similarity=0.200 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH------hhcC--CC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK------EKKM--FD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~------~~~~--f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+..|+ +++|+|++|+|||||++.+.+... ..+. |+ .....++++.+.
T Consensus 53 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 53 EAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 35566666666777 999999999999999999998532 1110 00 011223333321
Q ss_pred H------------------------HHHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 I------------------------TKIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ~------------------------~~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
. ......+++.+++. .....+ .+.....+.+.|..++-+++||++.
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 01112233333321 011112 2344556888888899999999998
Q ss_pred Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|. ..+...... +..||++||+.+.+..++++.+.|
T Consensus 211 ~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L 254 (286)
T PRK14275 211 SALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFF 254 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 76442 222222222 467999999999887777766444
No 262
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=74.81 Aligned_cols=140 Identities=12% Similarity=0.258 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-----------------EeCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-----------------VVSQ-------- 218 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~-------- 218 (333)
..++.++..+..|+ .++|+||+|+|||||.+.++....+... ...|- ++.|
T Consensus 17 ~il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G--~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 17 KILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSG--TLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred eeecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCc--eEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 34455565666777 8999999999999999999977543221 11110 0111
Q ss_pred --------------CCCHHHHHHHHHHHhCCCCC------CC-CCHHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889 219 --------------TPSITKIQDEIAGWLGIKEL------PD-NDELVRASLLCKRIEKQRVLVILDDLWVQIE------ 271 (333)
Q Consensus 219 --------------~~~~~~~~~~i~~~l~~~~~------~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------ 271 (333)
.++ .....+++.+++++.. .. ...+.....+.+.|+-.+-+|+||++.+..+
T Consensus 93 VeDNlifP~~~r~rr~d-r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 93 VEDNLIFPWQIRNRRPD-RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred hhhccccchHHhccCCC-hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 111 2334456666665411 11 2234556778888899999999998876533
Q ss_pred hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecCC
Q 046889 272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
.+.+.+... .....|+-+||+++-+-......+.+.+
T Consensus 172 ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred HHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 444433332 4467799999999987666555555543
No 263
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.1e-07 Score=83.41 Aligned_cols=140 Identities=8% Similarity=0.186 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+ .+. ++ .....++++.+.
T Consensus 26 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 26 QALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 35566666666777 8999999999999999999875431 110 00 000122233221
Q ss_pred -----HHH------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 222 -----ITK------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 222 -----~~~------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
..+ ....+++.++... ....+ .+...-.+.+.|..++-+++||++.+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 100 1123444444310 01112 23445568888888999999999987
Q ss_pred chhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|. ..+...... |..||++||+...+..++++.+.+
T Consensus 184 ~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l 226 (258)
T PRK14268 184 ALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFF 226 (258)
T ss_pred ccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 6442 222222222 678999999999877777766444
No 264
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.3e-07 Score=81.01 Aligned_cols=139 Identities=14% Similarity=0.242 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h----hcC--CCe--------------EEEEEeCCCCC-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E----KKM--FDE--------------VAMAVVSQTPS- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~----~~~--f~~--------------~~wv~v~~~~~- 221 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+... + .+. |+. ....++++.+.
T Consensus 20 ~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 20 ILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 4555555566677 999999999999999999987643 1 110 000 00112233221
Q ss_pred ----HH--------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 ----IT--------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ----~~--------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.. .....+++.+++.. ....+ .+.....+.+.+..++-+++||++.
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 10 01123344444421 01111 2334556778888889999999998
Q ss_pred Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..| +..+..... .|..||++||+...+..++++.+.+
T Consensus 178 ~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 178 SALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred ccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEE
Confidence 7643 222222222 2678999999999877766666444
No 265
>PLN03073 ABC transporter F family; Provisional
Probab=98.55 E-value=7.8e-08 Score=95.49 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHHccCceEEEEeCCCCchhhhhcc---CCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 246 RASLLCKRIEKQRVLVILDDLWVQIELDRVG---IPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~---~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....|.+.|..++-+|+||++.+..|..... -.+...+..||++||+......+++..+.|
T Consensus 351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l 414 (718)
T PLN03073 351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHL 414 (718)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 3456777888889999999999875533220 011122567999999999988877776444
No 266
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.55 E-value=3.5e-07 Score=82.91 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCHHHH-----HHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP--SITKIQDEIAGWLGIKELPDNDELVR-----ASLLCK 252 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~~l~~ 252 (333)
..+|+|++|+|||||++.|++..... +|+..+|+.+.+.. ++.++.+.+...+-....+.....+. .....+
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998765 89999999998876 56666766652211112222222111 122333
Q ss_pred HH--ccCceEEEEeCCCC
Q 046889 253 RI--EKQRVLVILDDLWV 268 (333)
Q Consensus 253 ~l--~~k~~LlVlDdv~~ 268 (333)
.+ .+++.+|++|++..
T Consensus 250 ~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 250 RLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHcCCCEEEEEEChHH
Confidence 32 45899999999863
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.55 E-value=2.1e-06 Score=77.62 Aligned_cols=149 Identities=13% Similarity=0.195 Sum_probs=86.3
Q ss_pred ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe--CCCCCHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV--SQTPSITKIQDEIA 230 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~ 230 (333)
|.....++|++..++.+..++..+..+.+.++|+.|+||||+++.+.+...... +.. .++.+ +...... .....+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~-~~~~~i 89 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGID-VIRNKI 89 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchH-HHHHHH
Confidence 334456889999999999999877766789999999999999999988764321 211 12222 1111111 111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHH---ccCceEEEEeCCCCch--h---hhhccCCCCCCCcEEEEeeCChH-HHhhccc
Q 046889 231 GWLGIKELPDNDELVRASLLCKRI---EKQRVLVILDDLWVQI--E---LDRVGIPYGNDGCKFLLTSRSRA-ACNQMQA 301 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~--~---~~~l~~~~~~~g~~vivTTr~~~-v~~~~~~ 301 (333)
..+ .... ...+-++++|++.... . +..+ +......+.+|+++.... +...+..
T Consensus 90 ~~~-----------------~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~-le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 90 KEF-----------------ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRT-MEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHH-----------------HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHH-HhcCCCCCeEEEEeCCccccchhHHH
Confidence 111 1111 1245689999986442 1 2222 111223466777665432 2221211
Q ss_pred c--eEecCCCCHHHHHHHHHhhc
Q 046889 302 H--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 302 ~--~~~l~~L~~~e~~~lf~~~a 322 (333)
+ .+.+.++++++....+.+.+
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIA 174 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHH
Confidence 2 38899999999888887765
No 268
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.55 E-value=7.9e-08 Score=80.30 Aligned_cols=144 Identities=13% Similarity=0.250 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EE--------------EEEeCCCCCH
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VA--------------MAVVSQTPSI 222 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~--------------wv~v~~~~~~ 222 (333)
+....++.+...+.+++ .|+|+|++|+|||||.+.+.....+... |.. -+ .-.+.|.+++
T Consensus 15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 56666777777788888 9999999999999999999865433211 000 00 0122222211
Q ss_pred ------------------------------H--HHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEe
Q 046889 223 ------------------------------T--KIQDEIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 223 ------------------------------~--~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlD 264 (333)
+ ...-+.++++++.+ ..-...++.+-.|.+.|.+++-+|+-|
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILAD 172 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD 172 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecC
Confidence 1 11112234444321 111223455678999999999999999
Q ss_pred CCCCchh-------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++-+..| .+.+.-.....|..||++.|..+.|..++++.|-|
T Consensus 173 EPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl 221 (258)
T COG3638 173 EPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL 221 (258)
T ss_pred CcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe
Confidence 8875533 22221112334889999999999998888776433
No 269
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.55 E-value=1.4e-07 Score=83.20 Aligned_cols=140 Identities=15% Similarity=0.269 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+
T Consensus 27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 27 VLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 4566666666777 8999999999999999999876533210 000 0011122211
Q ss_pred --CHH-------------------HHHHHHHHHhCCC-CC-----CC-CCHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 --SIT-------------------KIQDEIAGWLGIK-EL-----PD-NDELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 --~~~-------------------~~~~~i~~~l~~~-~~-----~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.. .....++..++.. .. .. ...+.....+.+.+..++-+++||++.+..|.
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 111 1233455555553 11 11 12344566788888899999999999877542
Q ss_pred h------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. .+...... .|..||++||+......+++..+.+
T Consensus 185 ~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 2 22222222 3778999999999887766666433
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.54 E-value=1e-07 Score=92.25 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe---------------EEEEEeCCCC------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~---------------~~wv~v~~~~------ 220 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+.....+. ++. ....++++.+
T Consensus 300 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 300 VVVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 45777777777788 9999999999999999999875421110 000 0012223321
Q ss_pred --CHH--------------------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 221 --SIT--------------------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 221 --~~~--------------------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
+.. .....+++.+++. .. ...+ -+.....+...+..++-+++||++.+..|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 110 1123445555553 11 1112 34456678888888999999999987755
Q ss_pred hh------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 272 LD------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.. .+...... .|..||++||+...+..++++.+.+
T Consensus 458 ~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l 499 (529)
T PRK15134 458 KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499 (529)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 22 22222222 3778999999999887777776544
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=1.1e-07 Score=91.56 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hcC--CCe-------------EEEEEeCCCC------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKM--FDE-------------VAMAVVSQTP------ 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~--f~~-------------~~wv~v~~~~------ 220 (333)
..++.+...+..++ +++|+|+||+|||||++.+++..++ .+. |+. ....++++.+
T Consensus 276 ~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 276 KRVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 46677777777777 9999999999999999999976431 110 000 0011222220
Q ss_pred ---CH-----------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 221 ---SI-----------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 221 ---~~-----------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+. ......+++.+++. ... ..+ -+.....+.+.+..++-+++||++.
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 00 01233456666653 111 112 3445667888888899999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|.. .+.......|..||++||+.+.+..++++.+.+
T Consensus 434 ~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 434 RGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred CCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 775422 222222234778999999999877776665433
No 272
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.4e-07 Score=82.71 Aligned_cols=140 Identities=10% Similarity=0.194 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTP- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~- 220 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+ .+. ++. .....+.+.+
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 18 HAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 34556666666777 9999999999999999999987532 110 000 0112223221
Q ss_pred -----CHH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 221 -----SIT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 221 -----~~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
++. .....+++.+++. .....+ .+...-.+.+.+..++-+++||++
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111 1112334444431 011112 234455677888888999999999
Q ss_pred CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..| +..+..... .+..||++||+...+..++++.+.+
T Consensus 176 t~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 176 CSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEE
Confidence 87644 222222222 2467999999998877766766444
No 273
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.54 E-value=1.3e-07 Score=80.39 Aligned_cols=134 Identities=10% Similarity=-0.026 Sum_probs=70.9
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCC------CCCHHHHHHH----------
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQ------TPSITKIQDE---------- 228 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~------~~~~~~~~~~---------- 228 (333)
+...+..++ +++|+|+||+|||||++.+.+...+... +.... +.+++ ..+..+.+.-
T Consensus 6 vs~~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 6 TDFVMGYHE--HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-LPLGANSFILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred eeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-eccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence 333445566 9999999999999999999987543221 11111 11111 1121221111
Q ss_pred -----HHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeC
Q 046889 229 -----IAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSR 291 (333)
Q Consensus 229 -----i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr 291 (333)
+...+++... ...+ .+...-.+...+..++-++++|++.+..+ +..+...... +..+|++||
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH 161 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEEC
Confidence 1111122110 1111 22234457777778888999999854422 2221111111 234899999
Q ss_pred ChHHHhhcccceEec
Q 046889 292 SRAACNQMQAHIVDV 306 (333)
Q Consensus 292 ~~~v~~~~~~~~~~l 306 (333)
+......++++.+.|
T Consensus 162 ~~~~~~~~~d~i~~l 176 (213)
T PRK15177 162 NPRLIKEHCHAFGVL 176 (213)
T ss_pred CHHHHHHhcCeeEEE
Confidence 999877666665333
No 274
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.54 E-value=4.7e-07 Score=82.10 Aligned_cols=137 Identities=13% Similarity=0.229 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. .....+.|++
T Consensus 36 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 36 AVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 4555555566777 9999999999999999999876543210 000 0122233332
Q ss_pred --CHHH--------------------HHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 221 --SITK--------------------IQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 221 --~~~~--------------------~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
++.+ ...++++.+++.. . ...+ -+.+...|...|..++-+||+|++.+..|
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1111 1123344455421 1 1111 34456678888889999999999987754
Q ss_pred h------hhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889 272 L------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 272 ~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
. ..+..... ..|..||++||+...+..++++.
T Consensus 194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 2 22222222 23788999999999988777766
No 275
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.54 E-value=1.8e-07 Score=90.96 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC------CHHHHH-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP------SITKIQ------- 226 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~------~~~~~~------- 226 (333)
..++++...+..++ +++|+|+||+|||||++.+.+...+... +.. ....++++.+ ++.+.+
T Consensus 19 ~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~ 96 (552)
T TIGR03719 19 EILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEI 96 (552)
T ss_pred eeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHH
Confidence 45667777777788 9999999999999999999987643221 110 1112333332 111111
Q ss_pred -----------------------------------------------HHHHHHhCCCC----CCCCC-HHHHHHHHHHHH
Q 046889 227 -----------------------------------------------DEIAGWLGIKE----LPDND-ELVRASLLCKRI 254 (333)
Q Consensus 227 -----------------------------------------------~~i~~~l~~~~----~~~~~-~~~~~~~l~~~l 254 (333)
..++..+++.. ....+ .+.....+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al 176 (552)
T TIGR03719 97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL 176 (552)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 01112222211 01111 234456688888
Q ss_pred ccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 255 EKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..++-+++||++.+..|.. .+.... +..||++||+......++++.+.+
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 8899999999998775422 221222 246999999999887777665433
No 276
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=3.9e-07 Score=80.80 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~ 222 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+..++... |+. ....++++.+ ++
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 22 ALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 5555666666777 9999999999999999999977543221 100 0112222221 11
Q ss_pred H------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889 223 T------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L 272 (333)
Q Consensus 223 ~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~ 272 (333)
. .....++..+++... ...+ .+.....+.+.|..++-+++||++.+..| +
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 112333444444311 1112 33445668888888999999999987644 2
Q ss_pred hhccCCCCC-CCcEEEEeeCChHHHhhcccce
Q 046889 273 DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 ~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~ 303 (333)
..+...... .|..||++||+.+.... +++.
T Consensus 180 ~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i 210 (279)
T PRK13635 180 LETVRQLKEQKGITVLSITHDLDEAAQ-ADRV 210 (279)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 222222222 37889999999987764 5544
No 277
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.53 E-value=1.5e-07 Score=91.62 Aligned_cols=143 Identities=18% Similarity=0.258 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-EEEEeCCCC-------CHH-----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-AMAVVSQTP-------SIT----- 223 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-~wv~v~~~~-------~~~----- 223 (333)
++....++.+...+..|+ +++|+|+||+|||||++.+.+...+... +... ...++++.+ +..
T Consensus 332 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~ 409 (552)
T TIGR03719 332 FGDKLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISG 409 (552)
T ss_pred ECCeeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHh
Confidence 344456777777777777 9999999999999999999877543211 1100 112233321 111
Q ss_pred -----------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCC
Q 046889 224 -----------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPY 279 (333)
Q Consensus 224 -----------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~ 279 (333)
...+.++..+++.. . ...+ .+...-.+...+..++-+++||++.+..|... +....
T Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 489 (552)
T TIGR03719 410 GLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF 489 (552)
T ss_pred hccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 11234566666531 1 1112 23445678888889999999999988755222 21222
Q ss_pred CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 280 GNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 280 ~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.| .||++||+.+.+..++++.+.++
T Consensus 490 --~~-~viivsHd~~~~~~~~d~i~~l~ 514 (552)
T TIGR03719 490 --AG-CAVVISHDRWFLDRIATHILAFE 514 (552)
T ss_pred --CC-eEEEEeCCHHHHHHhCCEEEEEE
Confidence 24 59999999998888777775553
No 278
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2e-07 Score=82.21 Aligned_cols=141 Identities=11% Similarity=0.211 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh-----h-c--CCCe--------------EEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE-----K-K--MFDE--------------VAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-----~-~--~f~~--------------~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+.... . + .++. ....++++.+.
T Consensus 27 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 27 EAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 35666666666777 9999999999999999999876431 1 1 0000 01223333321
Q ss_pred -----H-----------------HHHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889 222 -----I-----------------TKIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQ 269 (333)
Q Consensus 222 -----~-----------------~~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (333)
. ......+++.++.. .....+ .+...-.+.+.|..++-+++||++.+.
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 0 01112233444321 001112 234455677888889999999999876
Q ss_pred hh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 270 IE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 270 ~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.| +..+...... +..||++||+...+..++++.+.|.
T Consensus 185 LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 185 LDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 44 2222222222 5679999999998888888776555
No 279
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.53 E-value=3.8e-07 Score=77.87 Aligned_cols=140 Identities=14% Similarity=0.213 Sum_probs=81.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------------C--eEEEEEeCCCCC----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------------D--EVAMAVVSQTPS---- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------------~--~~~wv~v~~~~~---- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+++...+... + . .....++++.+.
T Consensus 16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 16 TLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 4555555556677 9999999999999999999977532110 0 0 011223333321
Q ss_pred -HH-----------HHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 222 -IT-----------KIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 222 -~~-----------~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
.. .....+++.+++. .....+ .+...-.|.+.+..++-+++||++.+..+.
T Consensus 94 t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 173 (218)
T cd03290 94 TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173 (218)
T ss_pred cHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence 10 1112333333321 011122 344566788888889999999999876442
Q ss_pred h------h--ccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 D------R--VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ~------~--l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
. . +.......|..||++||+...... +++.+.+.
T Consensus 174 ~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~ 215 (218)
T cd03290 174 HLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMK 215 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh-CCEEEEec
Confidence 2 1 211223347789999999988653 55545543
No 280
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.53 E-value=4.4e-06 Score=82.39 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=101.7
Q ss_pred ccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhh---cCCC--eEEEEEeCCCCCHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEK---KMFD--EVAMAVVSQTPSITKIQ 226 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~--~~~wv~v~~~~~~~~~~ 226 (333)
..+.+|+++++.|...|.+ +...++.|.|+.|+|||++++.|....... .... ..+++.+..-..+..+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4567999999999888753 222467899999999999999998776432 1222 23455555556677788
Q ss_pred HHHHHHhCCC-CCCCCCHHHHHHHHHHHHcc---CceEEEEeCCCCch-----hhhhc-cCCCCCCCcEE--EEeeCChH
Q 046889 227 DEIAGWLGIK-ELPDNDELVRASLLCKRIEK---QRVLVILDDLWVQI-----ELDRV-GIPYGNDGCKF--LLTSRSRA 294 (333)
Q Consensus 227 ~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~-----~~~~l-~~~~~~~g~~v--ivTTr~~~ 294 (333)
..|..++... +....+..+....+...+.. ...+|||||+.... .+..+ ..+. ..+++| |.+|.+.+
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEEEEecCchh
Confidence 8888888432 22222333444555554422 23589999987432 12222 1122 224444 33554433
Q ss_pred H--------HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889 295 A--------CNQMQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 295 v--------~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+ ..+++...+...|++.++-..++.+++-
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 2 2223333367799999999999999875
No 281
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2.7e-07 Score=88.60 Aligned_cols=140 Identities=12% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-------------EEEEeCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-------------AMAVVSQTP-------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-------------~wv~v~~~~-------- 220 (333)
.++.+...+..|+ +++|+|+||+|||||++.+++..++... ++.. ...++++..
T Consensus 263 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 263 SIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred ccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 5566665566677 9999999999999999999866432110 0000 001111110
Q ss_pred -C------------------------HHHHHHHHHHHhCCC-CCC-----C-CCHHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 221 -S------------------------ITKIQDEIAGWLGIK-ELP-----D-NDELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 221 -~------------------------~~~~~~~i~~~l~~~-~~~-----~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
+ .......++..++.. ... . +.-+.....+...+..++-+++||++.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0 011123444555542 111 1 1234556678888889999999999987
Q ss_pred chhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|.. .+.......|..||++||+.+.+..++++.+.+
T Consensus 421 gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 421 GIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVM 464 (491)
T ss_pred ccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence 75422 222222334777999999999888887776544
No 282
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.53 E-value=2.8e-07 Score=77.26 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=71.1
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------EEEEEeCCCC------CHH------------
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------VAMAVVSQTP------SIT------------ 223 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------~~wv~v~~~~------~~~------------ 223 (333)
+..++ +++|+|++|+|||||++.+.+...+... ++. ....++++.. +..
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 100 (195)
T PRK13541 23 FLPSA--ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNS 100 (195)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhccc
Confidence 34566 9999999999999999999987543221 000 0011222221 111
Q ss_pred -HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEee
Q 046889 224 -KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTS 290 (333)
Q Consensus 224 -~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTT 290 (333)
.....+++.++...... .+ .+.....+.+.+..++-+++||++.+..| +..+.......|..||++|
T Consensus 101 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 11233445555431111 11 23445567888888999999999987644 2222111223477899999
Q ss_pred CChHHHh
Q 046889 291 RSRAACN 297 (333)
Q Consensus 291 r~~~v~~ 297 (333)
|+.....
T Consensus 181 h~~~~i~ 187 (195)
T PRK13541 181 HLESSIK 187 (195)
T ss_pred CCccccc
Confidence 9987644
No 283
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.53 E-value=9.2e-08 Score=87.82 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=95.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----------------------------CCCeEEEEEe
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----------------------------MFDEVAMAVV 216 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----------------------------~f~~~~wv~v 216 (333)
..+.+...+..+. +-++.|.||+|||||++.+|+..+++. ||...--.++
T Consensus 19 And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 19 ANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred ecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 3344555556677 899999999999999999998876542 3321111111
Q ss_pred CCC------------CC---HHHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCc---hh-
Q 046889 217 SQT------------PS---ITKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQ---IE- 271 (333)
Q Consensus 217 ~~~------------~~---~~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~- 271 (333)
.++ .+ ...-+..+..+++++-.+ ..+ -.++.-.|.+.|-...-+||||++... .+
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~ 176 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 111 01 233455667777775111 122 244566788888888889999999865 23
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccce-----------Ee-cCCCCHHHHHHHHHhh
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI-----------VD-VRTLTEEESWRSAEGK 321 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~-----------~~-l~~L~~~e~~~lf~~~ 321 (333)
+......+...|..||++||--.-+..+++.. +. ....+.++..+|.-.+
T Consensus 177 ~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~ 240 (501)
T COG3845 177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGR 240 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCC
Confidence 33333445666999999999876655444432 23 4455677777766543
No 284
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.6e-07 Score=82.46 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=86.5
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc-------C-----CC----eEEEEEe
Q 046889 159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK-------M-----FD----EVAMAVV 216 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~-------~-----f~----~~~wv~v 216 (333)
++|+...++.+...+.+++ +++|+|++|+|||||++.+.+...+ .+ . +. .....++
T Consensus 17 ~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 94 (261)
T PRK14263 17 FYGNFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94 (261)
T ss_pred EeCCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEE
Confidence 3455456666666677777 9999999999999999999876532 11 0 00 0112333
Q ss_pred CCCCC-----HH-----------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889 217 SQTPS-----IT-----------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 217 ~~~~~-----~~-----------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlD 264 (333)
++.+. .. .....+++.+++.. ....+ .+.....+.+.+..++-+++||
T Consensus 95 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 174 (261)
T PRK14263 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174 (261)
T ss_pred ecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 33321 11 11223444444321 01112 3444566888888899999999
Q ss_pred CCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++.+..| +..+..... .+..||++||+...+..++++.+.+
T Consensus 175 EPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 175 EPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 9987644 222222222 2578999999999877777766444
No 285
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.52 E-value=7.4e-07 Score=80.82 Aligned_cols=139 Identities=10% Similarity=0.187 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh----c--CCCe----------------EEEEEeCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK----K--MFDE----------------VAMAVVSQTP- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~--~f~~----------------~~wv~v~~~~- 220 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+..... + .|+. .....+.|++
T Consensus 30 ~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 30 TAVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 35566666666777 99999999999999999999876431 1 0000 0112233332
Q ss_pred -------CHHH-------------------HHHHHHHHhCCCCC--------CCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 221 -------SITK-------------------IQDEIAGWLGIKEL--------PDND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 221 -------~~~~-------------------~~~~i~~~l~~~~~--------~~~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
.... ...++++.+++.+. ...+ .+.....|...|..++-|||+|+
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE 187 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1111 11233444444311 0111 23445678888889999999999
Q ss_pred CCCchhh------hhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889 266 LWVQIEL------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 266 v~~~~~~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+.+..|. ..+..... ..|..||++||+...+..++++.+
T Consensus 188 Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~ 233 (330)
T PRK09473 188 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL 233 (330)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 9877542 22222222 237789999999998877776663
No 286
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.52 E-value=3.1e-07 Score=77.77 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH--HHHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI--TKIQ 226 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~--~~~~ 226 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+....... |+ .....++++.+.. ..+.
T Consensus 22 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 22 PVLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred ccccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 35666666666777 9999999999999999999876432211 00 0011223332211 0111
Q ss_pred H-----------HHHHHhCCC-CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEE
Q 046889 227 D-----------EIAGWLGIK-ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFL 287 (333)
Q Consensus 227 ~-----------~i~~~l~~~-~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vi 287 (333)
+ .+...+... .....+ .+...-.+.+.+..++-+++||++.+..|.. .+..... .|..+|
T Consensus 100 ~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii 178 (207)
T cd03369 100 SNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTIL 178 (207)
T ss_pred HHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEE
Confidence 1 111222211 111222 3445566888888899999999998764422 2222222 377899
Q ss_pred EeeCChHHHhhcccceEecC
Q 046889 288 LTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 288 vTTr~~~v~~~~~~~~~~l~ 307 (333)
++||+...+.. +++.+.+.
T Consensus 179 i~th~~~~~~~-~d~v~~l~ 197 (207)
T cd03369 179 TIAHRLRTIID-YDKILVMD 197 (207)
T ss_pred EEeCCHHHHhh-CCEEEEEE
Confidence 99999988765 45554443
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.52 E-value=1.3e-07 Score=91.60 Aligned_cols=141 Identities=11% Similarity=0.172 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC----------CCe--------EEEEEeCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM----------FDE--------VAMAVVSQT 219 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~----------f~~--------~~wv~v~~~ 219 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+...+ .+. +.. .....+.|.
T Consensus 23 ~~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 23 TVVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 45677777777788 9999999999999999999887642 110 000 012233333
Q ss_pred CC--------HH-------------------HHHHHHHHHhCCCC--------CCCCC-HHHHHHHHHHHHccCceEEEE
Q 046889 220 PS--------IT-------------------KIQDEIAGWLGIKE--------LPDND-ELVRASLLCKRIEKQRVLVIL 263 (333)
Q Consensus 220 ~~--------~~-------------------~~~~~i~~~l~~~~--------~~~~~-~~~~~~~l~~~l~~k~~LlVl 263 (333)
+. .. .....+++.+++.. ....+ .+.....+.+.|..++-+|+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 21 00 11223444455521 01112 344566788888899999999
Q ss_pred eCCCCchhhh------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 264 DDLWVQIELD------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 264 Ddv~~~~~~~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|++.+..|.. .+...... .|..||++||+.+.+..++++.+.|
T Consensus 181 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 9998875422 22222222 3678999999999887777766444
No 288
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=2.6e-07 Score=80.64 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc--CCC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK--MFD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~--~f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+ .+ .++ ......+++.+.
T Consensus 17 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 17 KAVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred eeEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 34556666666777 9999999999999999999975431 11 000 001122333221
Q ss_pred H--HHHH----------------------HHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 I--TKIQ----------------------DEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ~--~~~~----------------------~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
. ..+. ...++.++... ....+ .+.....+...+..++-+++||++.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 0 0111 11222223210 01111 2334556778888899999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|.. .+...... +..||++||+.+.+..++++.+.+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 175 SALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEE
Confidence 764422 22222222 568999999999766666665433
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=7.7e-07 Score=76.94 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=78.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH--HHH--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI--TKI-- 225 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~--~~~-- 225 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. ....++.+.+.. ..+
T Consensus 16 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (236)
T cd03253 16 VLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93 (236)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence 4445555555677 9999999999999999999977543211 100 001222322210 001
Q ss_pred -------------HHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 226 -------------QDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 226 -------------~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
....+...+.. .....+ .+...-.+.+.|..++-+++||++.+..|
T Consensus 94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~ 173 (236)
T cd03253 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173 (236)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11111111110 001122 33445668888889999999999987644
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+...... |..||++||+...... +++.+.+
T Consensus 174 ~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l 208 (236)
T cd03253 174 REIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVL 208 (236)
T ss_pred HHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEE
Confidence 2222223334 7789999999988765 5555444
No 290
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.6e-06 Score=86.14 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=90.4
Q ss_pred cccccccccchHHHHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVSI-IGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|...+..+++.- +.++|+.|+||||+|+.+............ . .+..-.....+.
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~------~-pCg~C~sC~~i~ 83 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA------T-PCGVCSSCVEIA 83 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC------C-CCCCchHHHHHh
Confidence 34455678999999999999988876544 589999999999999999987642211100 0 000000001111
Q ss_pred HHhC-----CCCCCCCCHHHH---HHHHH-HHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889 231 GWLG-----IKELPDNDELVR---ASLLC-KRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-AC 296 (333)
Q Consensus 231 ~~l~-----~~~~~~~~~~~~---~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~ 296 (333)
.... .........+.. ...+. .-..+++.++|||++... ..++.+. +..+...+++|++|.+.. +.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 1000 000000111111 11111 112356779999998754 3334431 222233566666665543 33
Q ss_pred hhcc--cceEecCCCCHHHHHHHHHhhc
Q 046889 297 NQMQ--AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 297 ~~~~--~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..+- ...|++++|+.++....+.+.+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 2322 2339999999999998888754
No 291
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.52 E-value=2.4e-07 Score=80.91 Aligned_cols=140 Identities=9% Similarity=0.195 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc--CCC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK--MFD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~--~f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+.... .+ .++ .....++++.+.
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 34555666666777 9999999999999999999875321 11 000 011223333321
Q ss_pred H--HHHH----------------------HHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 I--TKIQ----------------------DEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ~--~~~~----------------------~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
. ..+. ..+++.++.. .....+ .+.....+.+.+..++-+++||++.
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 1111 1122222221 011122 2344556778888889999999998
Q ss_pred Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|. ..+..... .+..||++||+.+.+..++++.+.+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 175 SALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred ccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEE
Confidence 76442 22222222 2667999999999877766666444
No 292
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=2.1e-07 Score=81.39 Aligned_cols=137 Identities=13% Similarity=0.225 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h----hcC--CC--------------eEEEEEeCCCC--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E----KKM--FD--------------EVAMAVVSQTP-- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~----~~~--f~--------------~~~wv~v~~~~-- 220 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+... + .+. |+ ......+++.+
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 19 AVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 4555555566777 899999999999999999998743 1 110 00 00112233321
Q ss_pred ----CHH-------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 221 ----SIT-------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 221 ----~~~-------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+.. .....+++.+++.. ....+ .+.....+.+.+..++-+++||++.
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 176 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 110 11223344444321 11122 3344556788888889999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..|.. .+...... +..||++||+......++++.+
T Consensus 177 ~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T PRK14256 177 SALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTA 218 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE
Confidence 764422 22122222 4579999999988776666653
No 293
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=9.2e-07 Score=71.87 Aligned_cols=143 Identities=15% Similarity=0.286 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------CCCe---EEEEEeCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------MFDE---VAMAVVSQTP- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~---~~wv~v~~~~- 220 (333)
..++++...+.+++ .+.+.||+|+|||||.+.+.+...+.. -|+. .-|.++-.+.
T Consensus 19 ~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 19 SALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred hhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence 46677777777888 899999999999999999987654322 1111 1133322211
Q ss_pred -----------CHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccC
Q 046889 221 -----------SITKIQDEIAGWLGIKELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGI 277 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~ 277 (333)
.-..+..+++...++.+.... .-..+...+.+.|.-.+-+|+||++....| ...+.+
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence 112345566666777543332 234566779999999999999999875532 222222
Q ss_pred CC-CCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889 278 PY-GNDGCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 278 ~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
.. ...|..++++||+.+.|.-+.+..+.|.|
T Consensus 177 dlw~~tgk~~lliTH~ieEAlflatrLvvlsp 208 (259)
T COG4525 177 DLWQETGKQVLLITHDIEEALFLATRLVVLSP 208 (259)
T ss_pred HHHHHhCCeEEEEeccHHHHHhhhheeEEecC
Confidence 11 23377799999999988777776654443
No 294
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.9e-07 Score=82.53 Aligned_cols=144 Identities=12% Similarity=0.205 Sum_probs=85.4
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ 218 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~ 218 (333)
+....++.+...+..++ +++|+|++|+|||||++.+.+.... .+. |+ .....++++
T Consensus 31 ~~~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q 108 (274)
T PRK14265 31 GGFLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ 108 (274)
T ss_pred CCeEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEcc
Confidence 33345667777777778 9999999999999999999865321 110 00 001122333
Q ss_pred CCC-----HHH-----------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 219 TPS-----ITK-----------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 219 ~~~-----~~~-----------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
.+. +.+ .....++.++.. .....+ .+.....+.+.|..++-+++||++
T Consensus 109 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 188 (274)
T PRK14265 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188 (274)
T ss_pred CCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 321 110 111223333321 011122 344456688888889999999999
Q ss_pred CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+..| +..+...... +..||++||+......++++.+.|.
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 189 CSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred cccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 87744 2222222233 5789999999999888887776553
No 295
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.51 E-value=1.9e-07 Score=90.83 Aligned_cols=143 Identities=20% Similarity=0.262 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC-------CHH-----
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP-------SIT----- 223 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~-------~~~----- 223 (333)
++....++.+...+..|+ +++|+|+||+|||||++.+++...+... +.. ....++++.. ++.
T Consensus 334 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~ 411 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISG 411 (556)
T ss_pred ECCeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHh
Confidence 344456777777777788 9999999999999999999977543211 111 0112333321 111
Q ss_pred -----------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889 224 -----------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY 279 (333)
Q Consensus 224 -----------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~ 279 (333)
...+.++..+++.. . ...+ .+.....+...+..++-+++||++.+..|.. .+...+
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 412 GLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF 491 (556)
T ss_pred hcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence 11234556666531 1 1112 2344557888888999999999998775422 222222
Q ss_pred CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 280 GNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 280 ~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.| .||++||+...+..+++..+.++
T Consensus 492 --~~-tvi~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 492 --PG-CAVVISHDRWFLDRIATHILAFE 516 (556)
T ss_pred --CC-eEEEEECCHHHHHHhCCEEEEEE
Confidence 24 59999999998888777775554
No 296
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.51 E-value=2.7e-07 Score=83.94 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=61.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCHH--H---HH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT--PSITKIQDEIAGWLGIKELPDNDEL--V---RA 247 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~---~~ 247 (333)
.|+ .++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.++..+-.......... . ..
T Consensus 167 ~Gq--~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQ--RGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCC--EEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 455 89999999999999999999987654 8999999999866 5778888888443322222211111 1 11
Q ss_pred HHHHHH--HccCceEEEEeCCCC
Q 046889 248 SLLCKR--IEKQRVLVILDDLWV 268 (333)
Q Consensus 248 ~~l~~~--l~~k~~LlVlDdv~~ 268 (333)
....+. -.+++.+|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 112222 246899999999863
No 297
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=2.5e-07 Score=80.65 Aligned_cols=140 Identities=11% Similarity=0.178 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------c--CCCe-------------EEEEEeCCCCCH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------K--MFDE-------------VAMAVVSQTPSI 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~--~f~~-------------~~wv~v~~~~~~ 222 (333)
..++.+...+.+++ +++|+|++|+|||||++.+.+...+. + .++. ....++++.+..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 35666666666777 99999999999999999998775421 1 0000 012223333210
Q ss_pred --HHHHH----------------------HHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 223 --TKIQD----------------------EIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 223 --~~~~~----------------------~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
..+.+ ..++.++.. .....+ .+.....|.+.+..++-+++||++.+
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 01111 112222221 001111 23345567788888899999999987
Q ss_pred chhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|. ..+...... +..||++||+......++++.+.+
T Consensus 175 ~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 175 ALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEE
Confidence 6442 222222222 467999999999877777766433
No 298
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.8e-07 Score=84.56 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=83.0
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------CCCeEEEEEeCCC------CCHH
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------MFDEVAMAVVSQT------PSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~f~~~~wv~v~~~------~~~~ 223 (333)
...|.|....+..+.+-+.-+. .|+||||+|+|||||+..+.+...+.. |--.+-|+.-... .++.
T Consensus 593 tFgy~gqkpLFkkldFGiDmdS--RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~ 670 (807)
T KOG0066|consen 593 TFGYPGQKPLFKKLDFGIDMDS--RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPV 670 (807)
T ss_pred cccCCCCCchhhcccccccccc--eeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHH
Confidence 4455677888888776654444 799999999999999999987764432 2223445532111 1111
Q ss_pred HH-----------HHHHHHHhCCCC------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCC
Q 046889 224 KI-----------QDEIAGWLGIKE------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGND 282 (333)
Q Consensus 224 ~~-----------~~~i~~~l~~~~------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~ 282 (333)
.. .+.-+..+|+.. ....+ .......+.+.-.+.+-+||||++.+..++..+ .-.+...
T Consensus 671 EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney 750 (807)
T KOG0066|consen 671 EYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY 750 (807)
T ss_pred HHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc
Confidence 11 112222333321 11111 222344566666678899999999988776555 3233333
Q ss_pred CcEEEEeeCChHHHhh
Q 046889 283 GCKFLLTSRSRAACNQ 298 (333)
Q Consensus 283 g~~vivTTr~~~v~~~ 298 (333)
..-||++||+..+...
T Consensus 751 ~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 751 NGGVIMVSHDERLIVE 766 (807)
T ss_pred cCcEEEEecccceeee
Confidence 3348999999876443
No 299
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.50 E-value=3e-07 Score=79.54 Aligned_cols=138 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. ....++++.+..
T Consensus 17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 17 ILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 4455555556677 9999999999999999999876532210 000 011222332210
Q ss_pred -----------HHHH--------HHHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 223 -----------TKIQ--------DEIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 223 -----------~~~~--------~~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
..+. ..++..+ +.. .....+ .+.....+.+.+..++-+++||++.+..|.
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 0110 0111111 110 011122 233455677888889999999999877442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+..... .|..||++||+...+.. ++..+.+
T Consensus 175 ~~l~~~l~~~~-~~~tiii~sH~~~~~~~-~d~v~~l 209 (237)
T cd03252 175 HAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRIIVM 209 (237)
T ss_pred HHHHHHHHHhc-CCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 22222222 37789999999998754 5555444
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.50 E-value=1.6e-07 Score=90.84 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CC--C-----------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MF--D-----------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f--~-----------------~~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+..++.. .| . .....++++.+.
T Consensus 298 ~il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 298 KAVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred eEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 35666666666777 999999999999999999987653211 01 0 000123333321
Q ss_pred ------HHH-----------------HHHHHHHHhCCCC-----CCCC-----C-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 ------ITK-----------------IQDEIAGWLGIKE-----LPDN-----D-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ------~~~-----------------~~~~i~~~l~~~~-----~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+.+ ....+++.+++.. .... + -+..+-.+...|..++-+|+||++.
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111 1223455566632 1111 1 2344566888888899999999998
Q ss_pred Cchhh------hhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 268 VQIEL------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 268 ~~~~~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..|. ..+..... ..|..||++||+...+..++++.+.+.
T Consensus 456 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~ 502 (520)
T TIGR03269 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502 (520)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 77542 22222222 237789999999998888777775553
No 301
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.50 E-value=6e-08 Score=85.55 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh---------c--CCCe------------EEEEEeCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK---------K--MFDE------------VAMAVVSQTP 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---------~--~f~~------------~~wv~v~~~~ 220 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+. + .|+. .....+++.+
T Consensus 15 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 15 AILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 35566666666777 99999999999999999998765432 1 0000 0011222221
Q ss_pred ------CHH----------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHc---------cC
Q 046889 221 ------SIT----------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIE---------KQ 257 (333)
Q Consensus 221 ------~~~----------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~---------~k 257 (333)
+.. .....+++.+++... ...+ .+.....+...+. .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 110 112334444544311 1112 2334455667776 48
Q ss_pred ceEEEEeCCCCchh------hhhccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 258 RVLVILDDLWVQIE------LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 258 ~~LlVlDdv~~~~~------~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+-+++||++.+..| +..+...... .|..||++||+......++++.+.|
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 89999999987644 2222222222 2778999999998876666665333
No 302
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=2.5e-07 Score=77.99 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH---hhcC---C------------CeEEEEEeCCCCC--H-H
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK---EKKM---F------------DEVAMAVVSQTPS--I-T 223 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~~~---f------------~~~~wv~v~~~~~--~-~ 223 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+... +... + ...+ ..+++... . .
T Consensus 22 il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 98 (202)
T cd03233 22 ILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI-IYVSEEDVHFPTL 98 (202)
T ss_pred eeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceE-EEEecccccCCCC
Confidence 4445555555676 999999999999999999998765 2110 0 0011 12232211 0 1
Q ss_pred HHHHHHHHH--hCCC-CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCC-CCCcEEE-EeeC
Q 046889 224 KIQDEIAGW--LGIK-ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYG-NDGCKFL-LTSR 291 (333)
Q Consensus 224 ~~~~~i~~~--l~~~-~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~-~~g~~vi-vTTr 291 (333)
.+.+.+.-. .... .....+ .+...-.+.+.+..++-+++||++.+..| +..+..... ..+..+| +|+|
T Consensus 99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred cHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 222222211 1111 112223 34455578888888999999999987644 222222222 2244444 4566
Q ss_pred ChHHHhhcccceEecC
Q 046889 292 SRAACNQMQAHIVDVR 307 (333)
Q Consensus 292 ~~~v~~~~~~~~~~l~ 307 (333)
..+.+..++++.+.+.
T Consensus 179 ~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 179 ASDEIYDLFDKVLVLY 194 (202)
T ss_pred CHHHHHHhCCeEEEEE
Confidence 6555555566554443
No 303
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=4.5e-07 Score=79.11 Aligned_cols=139 Identities=11% Similarity=0.194 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH---Hh---hcC--CCe--------------EEEEEeCCCC--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA---KE---KKM--FDE--------------VAMAVVSQTP-- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~---~~---~~~--f~~--------------~~wv~v~~~~-- 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.. .. .+. ++. ....++++.+
T Consensus 18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 18 ALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 4455555566677 99999999999999999997641 11 110 000 0012222221
Q ss_pred ---CHH-------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 221 ---SIT-------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 221 ---~~~-------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
+.. .....+++.+++.. ....+ .+.....+.+.+..++-+++||++.+
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 175 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 110 11223344444421 11122 23445568888888999999999987
Q ss_pred chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..| +..+..... .+..||++||+...+..++++.+.+
T Consensus 176 ~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 176 ALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred cCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 644 222222222 2577999999999877766666444
No 304
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.49 E-value=3.6e-07 Score=78.17 Aligned_cols=140 Identities=16% Similarity=0.241 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------ 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------ 222 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... |+. .....+.+.+..
T Consensus 18 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 18 PVLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred ccccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 35666666677777 9999999999999999999876433211 000 001122222110
Q ss_pred ----------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 223 ----------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 223 ----------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
..-....++.++.. .....+ .+.....+.+.+..++-+++||++.+..+.
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 01111222222221 111122 234456688888889999999999876442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
..+..... .+..||++||+...... +++.+.+.
T Consensus 176 ~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~ 211 (221)
T cd03244 176 ALIQKTIREAF-KDCTVLTIAHRLDTIID-SDRILVLD 211 (221)
T ss_pred HHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEE
Confidence 22222222 25679999999988765 45555443
No 305
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=6.1e-07 Score=78.94 Aligned_cols=144 Identities=11% Similarity=0.170 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ 218 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~ 218 (333)
+....++.+...+..++ +++|+|++|+|||||++.+.+.... .+. ++ ......+++
T Consensus 21 ~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 98 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ 98 (264)
T ss_pred CCEEEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEcc
Confidence 33345666776677777 9999999999999999999875431 110 00 001122333
Q ss_pred CCCH--HHHHH--------------------HHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 219 TPSI--TKIQD--------------------EIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 219 ~~~~--~~~~~--------------------~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
.+.. ..+.+ .++..++.. .....+ .+.....+.+.+..++-+++||++
T Consensus 99 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 99 KPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred CCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2210 01111 122222221 001111 234455677778888899999999
Q ss_pred CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+..| +..+...... +..||++||+.+.+..++++.+.++
T Consensus 179 t~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 179 CSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 87644 2222222222 4579999999998887777775543
No 306
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2e-07 Score=91.82 Aligned_cols=141 Identities=10% Similarity=0.204 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------------------EEEE
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------------------VAMA 214 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------------------~~wv 214 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+...+... +.. .-..
T Consensus 30 ~~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig 107 (623)
T PRK10261 30 AAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA 107 (623)
T ss_pred eEEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE
Confidence 45667777777787 9999999999999999999977542110 100 0012
Q ss_pred EeCCCC--------CHHH-------------------HHHHHHHHhCCCC--------CCCCC-HHHHHHHHHHHHccCc
Q 046889 215 VVSQTP--------SITK-------------------IQDEIAGWLGIKE--------LPDND-ELVRASLLCKRIEKQR 258 (333)
Q Consensus 215 ~v~~~~--------~~~~-------------------~~~~i~~~l~~~~--------~~~~~-~~~~~~~l~~~l~~k~ 258 (333)
.+.|.+ ++.+ -..++++.+++.. ....+ .+.....|...|..++
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P 187 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 187 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCC
Confidence 233321 1111 1223455566631 11122 3445667888899999
Q ss_pred eEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 259 VLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 259 ~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
-+|+||++.+..|... +...+. ..|..||++||+...+..++++.+.|
T Consensus 188 ~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 188 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 9999999987755322 222222 23778999999999888877777444
No 307
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=3e-07 Score=80.76 Aligned_cols=142 Identities=11% Similarity=0.171 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------c-------CC-----C----eEEEEEeCCCC-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------K-------MF-----D----EVAMAVVSQTP- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~-------~f-----~----~~~wv~v~~~~- 220 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+..... + .. . ......+++.+
T Consensus 21 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 35566666666777 99999999999999999999876531 1 00 0 00112223321
Q ss_pred ----CHHH-------------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 221 ----SITK-------------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 221 ----~~~~-------------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
+..+ ....+++.+++. .....+ .+.....+.+.+..++-+++||++.
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~ 178 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1110 112223333321 011122 3344556778888889999999998
Q ss_pred Cchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 268 VQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 268 ~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..|... +...+. ..|..||++||+...+..++++.+.++
T Consensus 179 ~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 7754322 222221 237789999999999888877775554
No 308
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=4.6e-07 Score=80.05 Aligned_cols=140 Identities=12% Similarity=0.249 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----h-hcC--CCe--------------EEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----E-KKM--FDE--------------VAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~-~~~--f~~--------------~~wv~v~~~~~ 221 (333)
..++.+...+..|+ +++|+|++|+|||||++.+.+... + .+. ++. ....++++.+.
T Consensus 38 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 38 HALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 45566666666777 999999999999999999998753 1 110 100 01223333321
Q ss_pred H--HHHHHHH----------------------HHHhCC----C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 I--TKIQDEI----------------------AGWLGI----K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ~--~~~~~~i----------------------~~~l~~----~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
. ..+.+++ +..++. . .....+ .+.....+.+.|..++-+++||++.
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1 1111111 111110 0 001111 2334455777777888899999998
Q ss_pred Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..| +..+...... +..||++||+...+..++++.+.+
T Consensus 196 ~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 196 SALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFF 239 (271)
T ss_pred CcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 7644 2222222222 577999999999877777666433
No 309
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=1.1e-06 Score=83.85 Aligned_cols=151 Identities=12% Similarity=0.139 Sum_probs=88.9
Q ss_pred cccccccccchHHHHHHHHHHhhc---C-CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKD---E-KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD 227 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~---~-~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 227 (333)
.|.....++|++...+.|..|+.. + ..+.+.|+||.|+||||+|+.+++... +.. +-+..+.... ...+.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~-~~~i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRT-ADVIE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEccccccc-HHHHH
Confidence 344566789999999999888863 2 156899999999999999999988763 222 2222332222 22233
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHH-h-hc
Q 046889 228 EIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAAC-N-QM 299 (333)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~-~-~~ 299 (333)
.++...... ......++.+|||||+..... +..+.-.....++.||+|+.+..-. . .+
T Consensus 83 ~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 83 RVAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhH
Confidence 333222110 001113678999999975421 2333111223355677777654321 1 12
Q ss_pred cc--ceEecCCCCHHHHHHHHHhhc
Q 046889 300 QA--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 300 ~~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
.. ..+.+.+++.++....+.+.+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHH
Confidence 22 238899999988888877655
No 310
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2.4e-07 Score=81.64 Aligned_cols=140 Identities=11% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+++...+ .+. ++ .....++++.+.
T Consensus 34 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 34 EAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 45566666666777 9999999999999999999987531 110 00 001223333321
Q ss_pred H--HHH----------------------HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 I--TKI----------------------QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ~--~~~----------------------~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
. ..+ ..++++.+++. .....+ .+.....+.+.+..++-+++||++.
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 191 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 011 11223333331 011112 2344556788888899999999998
Q ss_pred Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|. ..+..... .+..||++||+.+....++++.+.|
T Consensus 192 ~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 192 SALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred ccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEE
Confidence 76442 22222222 2577999999998876666665433
No 311
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=2.8e-07 Score=80.50 Aligned_cols=139 Identities=12% Similarity=0.190 Sum_probs=79.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc--CCC--------------eEEEEEeCCCCC-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK--MFD--------------EVAMAVVSQTPS- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~--~f~--------------~~~wv~v~~~~~- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+ .+ .|+ .....++++.+.
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 19 ALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 4555555566777 9999999999999999999976431 11 010 001122233221
Q ss_pred ----HHH-------------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 222 ----ITK-------------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 222 ----~~~-------------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
..+ ....+++.+++. .....+ .+.....+...+..++-+++||++.+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 176 (251)
T PRK14270 97 FPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176 (251)
T ss_pred CCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 110 011233344321 111112 23345567777888889999999987
Q ss_pred chhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|.. .+...... +..||++||+.+.+..++++.+.+
T Consensus 177 ~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 177 ALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred cCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEE
Confidence 64422 22222222 467999999999877766666433
No 312
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.48 E-value=3.1e-07 Score=79.49 Aligned_cols=60 Identities=7% Similarity=0.083 Sum_probs=41.5
Q ss_pred HHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 245 VRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.....+.+.+..++-+++||++.+..| +..+..... .|..||++||+.+.+. .+++.+.+
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l 210 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVL 210 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEE
Confidence 345567788888889999999987644 222222223 4778999999998876 56665444
No 313
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.47 E-value=6.1e-07 Score=83.25 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHHHHHccCceEEEEeCCCCchhhhhcc-----CCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 246 RASLLCKRIEKQRVLVILDDLWVQIELDRVG-----IPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~-----~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+..|.+.|-.++.||+|||+.+..|++... +...+.+ .++|++|+++..+.++++++++.
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLD 293 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheec
Confidence 4557888888999999999999998866651 2111212 69999999999999888875553
No 314
>PLN03025 replication factor C subunit; Provisional
Probab=98.47 E-value=2.9e-06 Score=76.74 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=88.7
Q ss_pred cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeE-EEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEV-AMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~-~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|..++..++.+.+.++||.|+||||+|+.+.+...- ..|... .-+..+..... +.+++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGI-DVVRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccH-HHHHHHH
Confidence 34456678899999999988887777667889999999999999999887632 122211 11111111111 1222222
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--h---hhhccCCCCCCCcEEEEeeCChH-HHhhccc--c
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--E---LDRVGIPYGNDGCKFLLTSRSRA-ACNQMQA--H 302 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~---~~~l~~~~~~~g~~vivTTr~~~-v~~~~~~--~ 302 (333)
+.+...... .-.++..+++|||+.... . +... +......+++|+++.... +...+.+ .
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~-lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRT-MEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHH-HhcccCCceEEEEeCCccccchhHHHhhh
Confidence 221110000 001346799999987542 1 2222 122233566777775432 2222222 2
Q ss_pred eEecCCCCHHHHHHHHHhhc
Q 046889 303 IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~a 322 (333)
.+.++++++++....+.+.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 38999999999888887665
No 315
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.3e-07 Score=91.38 Aligned_cols=138 Identities=12% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+..++.. .|.. ....++.|.+
T Consensus 339 ~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 339 AVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred EEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 4566666666777 999999999999999999987653211 0000 0112233331
Q ss_pred --CHH-------------------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 --SIT-------------------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 --~~~-------------------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
++. ....++++.+++. .. ...+ -+.....|...|..++-|||+|++.+..|.
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 111 1122455556653 11 1112 344566788888899999999999877542
Q ss_pred ------hhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889 273 ------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 273 ------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
..+..... ..|..||++||+...+..+++..+
T Consensus 497 ~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~ 535 (623)
T PRK10261 497 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA 535 (623)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 22222222 237789999999998887777663
No 316
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.47 E-value=2.2e-06 Score=73.98 Aligned_cols=134 Identities=15% Similarity=0.201 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND 242 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 242 (333)
...+..+..+....+...+.|+||.|+|||+|++.+++..... -....++.+..... .
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---~----------------- 87 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---F----------------- 87 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---h-----------------
Confidence 4455556555544444578999999999999999999876532 12334444322100 0
Q ss_pred HHHHHHHHHHHHccCceEEEEeCCCCc---hhh----hhccCCCCCCC-cEEEEeeCChHH---------Hhhcccce-E
Q 046889 243 ELVRASLLCKRIEKQRVLVILDDLWVQ---IEL----DRVGIPYGNDG-CKFLLTSRSRAA---------CNQMQAHI-V 304 (333)
Q Consensus 243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~----~~l~~~~~~~g-~~vivTTr~~~v---------~~~~~~~~-~ 304 (333)
.. .+.+.+.+ ..+|++||+... ..| ..+.......| .++|+||+.... ..++.... +
T Consensus 88 ~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 88 VP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred hH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 00 11122211 248999999643 222 22222222234 479999986632 33444444 8
Q ss_pred ecCCCCHHHHHHHHHhhcc
Q 046889 305 DVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 305 ~l~~L~~~e~~~lf~~~a~ 323 (333)
.++++++++-.+++++++.
T Consensus 163 ~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 9999999999999887653
No 317
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.7e-07 Score=81.54 Aligned_cols=143 Identities=11% Similarity=0.183 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ 218 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~ 218 (333)
+....++.+...+..++ +++|+|++|+|||||++.+.+.... .+. ++ .....++++
T Consensus 36 ~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q 113 (272)
T PRK14236 36 GDKQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ 113 (272)
T ss_pred CCeeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEec
Confidence 33345666666666777 9999999999999999999877431 110 00 011223333
Q ss_pred CCCH--HHH----------------------HHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889 219 TPSI--TKI----------------------QDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 219 ~~~~--~~~----------------------~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlD 264 (333)
.+.. ..+ ...+++.++... ....+ .+.....+.+.+..++-+++||
T Consensus 114 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 114 RPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 2210 011 112223333210 01112 2344556778888899999999
Q ss_pred CCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++.+..| +..+...... +..||++||+.+.+..++++.+.+
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 9987644 2222222222 567999999999877766666444
No 318
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=6e-07 Score=78.43 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 245 VRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.....+...+..++-+++||++.+..| +..+...... +..||++||+.+....++++.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEE
Confidence 345567777888889999999987644 2222222222 467999999998776666666444
No 319
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.47 E-value=4.7e-07 Score=79.91 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe------------EEEEEeCCCCCH--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE------------VAMAVVSQTPSI-------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~------------~~wv~v~~~~~~-------- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+.....+. ++. .....+++.+.+
T Consensus 19 ~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 19 VLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 5666666677788 9999999999999999999877542110 000 011223333311
Q ss_pred --------HHHHHHHHHHhCCCC----CC------------CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889 223 --------TKIQDEIAGWLGIKE----LP------------DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---- 273 (333)
Q Consensus 223 --------~~~~~~i~~~l~~~~----~~------------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---- 273 (333)
..-+...++.+++.. .. ..+ .+.....+.+.+..++-+++||++.+..|..
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 111223344444320 00 022 3445567888888899999999998775432
Q ss_pred --hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 --RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 --~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...... ..++.||++||+.+.... +++.+.|
T Consensus 177 l~~~l~~~-~~~~tii~isH~~~~i~~-~dri~vl 209 (275)
T cd03289 177 IRKTLKQA-FADCTVILSEHRIEAMLE-CQRFLVI 209 (275)
T ss_pred HHHHHHHh-cCCCEEEEEECCHHHHHh-CCEEEEe
Confidence 222222 237889999999987654 5555444
No 320
>PRK08727 hypothetical protein; Validated
Probab=98.47 E-value=2.3e-06 Score=73.75 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=79.2
Q ss_pred ccccch-HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 046889 157 YNFKSR-ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI 235 (333)
Q Consensus 157 ~~~~gr-~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 235 (333)
..|++. ...+..+...........+.|+|+.|+|||.|++.+++.....+ ....++...+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhHH-----
Confidence 344433 33444333333223334699999999999999999988765332 2344554221 111110
Q ss_pred CCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch---hhh----hccCCCCCCCcEEEEeeCChHH---------Hhhc
Q 046889 236 KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI---ELD----RVGIPYGNDGCKFLLTSRSRAA---------CNQM 299 (333)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~----~l~~~~~~~g~~vivTTr~~~v---------~~~~ 299 (333)
...+.+ .+..+||+||+.... .+. .+.......|..+|+|++...- ..++
T Consensus 86 -------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 -------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 111122 234589999986431 122 1211112336679999986432 2233
Q ss_pred ccc-eEecCCCCHHHHHHHHHhhcc
Q 046889 300 QAH-IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 300 ~~~-~~~l~~L~~~e~~~lf~~~a~ 323 (333)
... .+.+++++.++-..++++++.
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHH
Confidence 333 389999999999999998764
No 321
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=6.9e-07 Score=77.13 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=78.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----H--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----I-- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~-- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ....++++.+. .
T Consensus 17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 17 VLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 4455555566677 9999999999999999999877543211 000 00112222211 0
Q ss_pred -----------HHH--------HHHHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 223 -----------TKI--------QDEIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 223 -----------~~~--------~~~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
..+ +...++.+ +.. .....+ .+.....+.+.+..++-+++||++.+..|.
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 174 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE 174 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 000 01112222 111 011122 344566788888889999999999876442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+..... .+..||++||+...... +++.+.+
T Consensus 175 ~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l 209 (234)
T cd03251 175 RLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVL 209 (234)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEe
Confidence 22222222 36789999999988765 5555444
No 322
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.46 E-value=2.8e-07 Score=78.83 Aligned_cols=139 Identities=16% Similarity=0.215 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------ 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------ 220 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. ..-..+++.+
T Consensus 20 il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 20 VLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 4555555566677 9999999999999999999876432110 000 0011122221
Q ss_pred CH-------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 221 SI-------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 221 ~~-------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
+. ......+++.+++..... .+ .+.....+.+.+..++-+++||++.+..|.
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 11 112344555555532111 12 234455688888889999999999876442
Q ss_pred ---hhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ---DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ---~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+..... ..+..||++||+.++. .++++.+.+
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l 214 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHM 214 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEE
Confidence 22222222 2377899999999865 466666544
No 323
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=4.6e-07 Score=79.17 Aligned_cols=61 Identities=2% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 245 VRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.....+.+.+..++-+++||++.+..|.. .+..... .+..||++||+......++++.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFF 220 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 34556778888889999999998764422 2222222 2578999999999877776766444
No 324
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.2e-07 Score=87.39 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=91.8
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|..++..++. +.+.++||.|+||||+|+.+.......+.+...+|.+.+. ..+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~ 80 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVR 80 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHh
Confidence 344556789999999999999887764 3569999999999999999988765322222222222110 0000
Q ss_pred HHhC-----CCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhccCCC--CCCCcEEEEeeCChH-H
Q 046889 231 GWLG-----IKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVGIPY--GNDGCKFLLTSRSRA-A 295 (333)
Q Consensus 231 ~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~g~~vivTTr~~~-v 295 (333)
.... +........+.. ..+.+.+ ..++.++|+|+++.. ..+..+.-.+ ....+.+|++|+... +
T Consensus 81 ~~~h~dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred cCCCCceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 0000 000011112221 1122222 246679999999754 2344442222 223556666665543 3
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+.+.++++++....+.+.+
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 2223332 38999999999999988765
No 325
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=4.1e-07 Score=79.46 Aligned_cols=140 Identities=11% Similarity=0.221 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~~~~ 221 (333)
..++.+...+..++ +++|+|++|+|||||++.+.+.... .+. ++ .....++++.+.
T Consensus 18 ~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 18 EALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 35555665566777 8999999999999999999987531 110 00 000112233211
Q ss_pred -----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 -----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 -----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.. .....+++.+++. .....+ .+.....+.+.+..++-+++||++.
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 10 0112233444431 001111 2334556778888899999999998
Q ss_pred Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..|.. .+..... .+..||++||+......++++.+.|
T Consensus 176 ~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 176 SALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred ccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEE
Confidence 765422 2212222 2567999999999877766666444
No 326
>PRK09087 hypothetical protein; Validated
Probab=98.45 E-value=1.7e-06 Score=74.12 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
+.+.|+|+.|+|||+|++.++.... ..++... .+...++. .+.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~---------------------~~~~-- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN---------------------AAAE-- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH---------------------hhhc--
Confidence 4689999999999999998876532 1122211 11111111 1111
Q ss_pred eEEEEeCCCCc----hhhhhccCCCCCCCcEEEEeeCCh---------HHHhhcccce-EecCCCCHHHHHHHHHhhcc
Q 046889 259 VLVILDDLWVQ----IELDRVGIPYGNDGCKFLLTSRSR---------AACNQMQAHI-VDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 259 ~LlVlDdv~~~----~~~~~l~~~~~~~g~~vivTTr~~---------~v~~~~~~~~-~~l~~L~~~e~~~lf~~~a~ 323 (333)
-+|++||+... ..+..+.......|..+|+|++.. +...++.... +.+++++.++-.+++++++-
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 37888998532 233333222334477899988742 2333344444 99999999999999998763
No 327
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=5.8e-07 Score=78.59 Aligned_cols=61 Identities=2% Similarity=0.037 Sum_probs=41.4
Q ss_pred HHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 245 VRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.....+.+.+...+-+++||++.+..|.. .+...... +..||++||+......++++.+.+
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEE
Confidence 34556778888889999999998764422 22222222 467999999998877666665443
No 328
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=9.5e-08 Score=77.61 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=82.0
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe---CCCCC-------------
Q 046889 158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV---SQTPS------------- 221 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~~~------------- 221 (333)
..+|....++.+...+..++ +.+|+||||+|||||...+....+.+. ..+|+.- ...++
T Consensus 9 K~y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 9 KSYGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred HhhCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 34555556666666666677 999999999999999998887664322 2334321 11111
Q ss_pred ----------------------------HHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 ----------------------------ITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ----------------------------~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
-..+..+.++.+.+.+...... +..+..+.-.+.+..-.++||++-
T Consensus 84 N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred chhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 1122222233333321111111 112233444445555688999998
Q ss_pred Cchhhhhc------cC-CCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 268 VQIELDRV------GI-PYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 268 ~~~~~~~l------~~-~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+.+.- .. .-..-|-.|+++-|+-++|..++++.+-++
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK 210 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK 210 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeec
Confidence 77553321 11 112227789999999999988887775443
No 329
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.44 E-value=7.4e-07 Score=76.54 Aligned_cols=139 Identities=13% Similarity=0.251 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH--HHH--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI--TKI-- 225 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~--~~~-- 225 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++ .....++.+.+.. ..+
T Consensus 29 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 29 VLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 5666666666777 9999999999999999999977543211 00 0001122222210 000
Q ss_pred ----------------------HHHHHHHh--CCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 226 ----------------------QDEIAGWL--GIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 226 ----------------------~~~i~~~l--~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
...+++.+ +... ....+ .+...-.+.+.+..++-+++||++.+..|
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11223333 2221 11112 33445668888888999999999987644
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
+..+...... +..||++||+...... +++.+.|.
T Consensus 187 ~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~ 222 (226)
T cd03248 187 QQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILVLD 222 (226)
T ss_pred HHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEec
Confidence 2222122222 4679999999988754 55555553
No 330
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=9e-07 Score=78.43 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C-------------CeEEEEEeCCCC-------C
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F-------------DEVAMAVVSQTP-------S 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-------------~~~~wv~v~~~~-------~ 221 (333)
.++.+...+..|+ +++|+|++|+|||||++.+.+...+... | ...+ .++.+.+ +
T Consensus 22 ~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i-~~v~q~~~~~~~~~t 98 (277)
T PRK13642 22 QLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI-GMVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce-EEEEECHHHhhccCC
Confidence 4555555566777 9999999999999999999876543211 0 0011 1122221 1
Q ss_pred HH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----
Q 046889 222 IT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----- 272 (333)
Q Consensus 222 ~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----- 272 (333)
+. .....+++.+++... ...+ .+.....+.+.|..++-+++||++.+..|.
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~ 178 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 (277)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 10 011233344443211 1112 334556788888889999999999876442
Q ss_pred -hhccCCCCC-CCcEEEEeeCChHHHhhcccce
Q 046889 273 -DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 -~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~ 303 (333)
..+...... .|..||++||+...+.. +++.
T Consensus 179 l~~~l~~l~~~~g~tiil~sH~~~~~~~-~d~i 210 (277)
T PRK13642 179 IMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRI 210 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE
Confidence 222222222 37889999999988763 4444
No 331
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.43 E-value=6.9e-07 Score=80.93 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CHH------------------HH
Q 046889 183 ICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SIT------------------KI 225 (333)
Q Consensus 183 I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~~------------------~~ 225 (333)
|+|++|+|||||++.+.+..++... ++. .....+.+.+ +.. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999977543211 000 0112223322 111 11
Q ss_pred HHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC-CCCCcEEEEeeCC
Q 046889 226 QDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY-GNDGCKFLLTSRS 292 (333)
Q Consensus 226 ~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~-~~~g~~vivTTr~ 292 (333)
...+++.+++..... .+ .+...-.+.+.|..++-+++||++.+..| +..+.... ...|..||++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 234455555542211 12 33455678888888999999999987754 22222222 2237789999999
Q ss_pred hHHHhhcccceEec
Q 046889 293 RAACNQMQAHIVDV 306 (333)
Q Consensus 293 ~~v~~~~~~~~~~l 306 (333)
...+..++++.+.|
T Consensus 161 ~~e~~~~~d~i~vl 174 (325)
T TIGR01187 161 QEEAMTMSDRIAIM 174 (325)
T ss_pred HHHHHHhCCEEEEE
Confidence 99877777766433
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.43 E-value=1.1e-07 Score=91.26 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hcC-----------CC----eEEEEEeCCCC---
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKM-----------FD----EVAMAVVSQTP--- 220 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~-----------f~----~~~wv~v~~~~--- 220 (333)
+....++.+...+..++ +++|+|+||+|||||++.+.+.... .+. .. .....++++.+
T Consensus 271 ~~~~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 271 NDRPILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred CCeeEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 33345666766666777 9999999999999999999875331 000 00 00001111110
Q ss_pred -----CH----------------------HHHHHHHHHHhCCCC-CCCCC------HHHHHHHHHHHHccCceEEEEeCC
Q 046889 221 -----SI----------------------TKIQDEIAGWLGIKE-LPDND------ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 221 -----~~----------------------~~~~~~i~~~l~~~~-~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
.. ......+++.+++.. ..... .+...-.+.+.+..++-+++||++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 00 112345566666643 22222 234455688888889999999999
Q ss_pred CCchhh------hhccCCCCCCC-cEEEEeeCChHHHhh-cccceEec
Q 046889 267 WVQIEL------DRVGIPYGNDG-CKFLLTSRSRAACNQ-MQAHIVDV 306 (333)
Q Consensus 267 ~~~~~~------~~l~~~~~~~g-~~vivTTr~~~v~~~-~~~~~~~l 306 (333)
.+..|. ..+.......| +.||++||+.+.+.. ++...+.|
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l 476 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe
Confidence 877542 22222222233 469999999988765 45555444
No 333
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.42 E-value=2.9e-07 Score=85.98 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=106.0
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-------------------Ee
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-------------------VV 216 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------------------~v 216 (333)
..+.||.-..++.+...+..++ |.+++|.||+|||||++.+.+-..+.. ..+|+ .+
T Consensus 14 i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred ceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHHHHHhCCcEEE
Confidence 3456777788888888888888 999999999999999999987765432 11111 11
Q ss_pred CCCC----------------------------CHHHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEE
Q 046889 217 SQTP----------------------------SITKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVI 262 (333)
Q Consensus 217 ~~~~----------------------------~~~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlV 262 (333)
.|.. ......+.++..++..... ..+ .+.+.-.|.+.+..+.-+||
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111 1123345566666653111 112 23455678888888888999
Q ss_pred EeCCCCch------hhhhccCCCCCCCcEEEEeeCChHHHhhcccce-----------Ee-cCCCCHHHHHHHHHhh
Q 046889 263 LDDLWVQI------ELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI-----------VD-VRTLTEEESWRSAEGK 321 (333)
Q Consensus 263 lDdv~~~~------~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~-----------~~-l~~L~~~e~~~lf~~~ 321 (333)
||++.+.. .+..+...+...|..||.+||..+-...++++. .. +..++.++..++.-.+
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr 245 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGR 245 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCc
Confidence 99998662 244444455677999999999987655555543 23 4567777777776543
No 334
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=3.9e-06 Score=81.94 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=93.5
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|..++..+++ +.+.++|+.|+||||+++.+.....-...+.. ..+..-..++.|.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 344567789999999999999987764 45689999999999999998877642111100 0011111111111
Q ss_pred HH-----hCCCCCCCCCHHHHHHHHHHH----HccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChHH-H
Q 046889 231 GW-----LGIKELPDNDELVRASLLCKR----IEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRAA-C 296 (333)
Q Consensus 231 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~v-~ 296 (333)
.. +.+........++....+... ...+..++|||++.... .++.+. +.....++++|++|++..- .
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000111122222222211 12356699999997653 244442 2222336788888877653 2
Q ss_pred hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889 297 NQMQAHI--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a 322 (333)
..+.++. +.+++++.++..+.+.+..
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 2333333 9999999999988887654
No 335
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=5e-07 Score=81.17 Aligned_cols=59 Identities=2% Similarity=0.099 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 244 LVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+..+..|.+.|..++-+++||++.+..+. ..+...... +..||++||+...+..++++.
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEE
Confidence 34456678888889999999999876442 222222222 356999999999877766664
No 336
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=5.9e-07 Score=78.81 Aligned_cols=139 Identities=12% Similarity=0.195 Sum_probs=81.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCCC-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTPS- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~~- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+.... .+. ++. .....+++.+.
T Consensus 22 il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 22 AIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4555555566677 9999999999999999999986542 110 000 00112223221
Q ss_pred ----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 222 ----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 222 ----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
.. ....+++..+++. .....+ .+.....+.+.+..++-+++||++.+
T Consensus 100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 179 (259)
T PRK14260 100 FPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 (259)
T ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 10 1122333333331 001112 33445567888888889999999987
Q ss_pred chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..| +..+...... +..||++||+.+.+..++++.+.+
T Consensus 180 ~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 180 ALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred cCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 644 2222122222 467999999999888777777444
No 337
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.41 E-value=5.5e-07 Score=79.78 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----HH-H----------H
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----IT-K----------I 225 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~~-~----------~ 225 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++.. ..++++.+. .. . -
T Consensus 52 vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~-i~yv~q~~~l~~~tv~enl~~~~~~~~~~ 128 (282)
T cd03291 52 VLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-EEEEeCcccccccCHHHHhhcccccCHHH
Confidence 5556655566677 9999999999999999999987643221 1110 112233221 00 0 0
Q ss_pred HHHHHHHhCCCC----------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCC
Q 046889 226 QDEIAGWLGIKE----------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGND 282 (333)
Q Consensus 226 ~~~i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~ 282 (333)
...++..++... ....+ .+.....+.+.+..++-+++||++.+..+ +....+.....
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~ 208 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC
Confidence 112222222110 01222 34455678888889999999999987644 22211111123
Q ss_pred CcEEEEeeCChHHHhhcccceE
Q 046889 283 GCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..||++||+..... .+++.+
T Consensus 209 ~~tIiiisH~~~~~~-~~d~i~ 229 (282)
T cd03291 209 NKTRILVTSKMEHLK-KADKIL 229 (282)
T ss_pred CCEEEEEeCChHHHH-hCCEEE
Confidence 678999999998765 444443
No 338
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=8.3e-07 Score=78.95 Aligned_cols=140 Identities=13% Similarity=0.205 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ 218 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~ 218 (333)
+....++.+...+..++ +++|+|++|+|||||++.+.+.... .+. |. .....++++
T Consensus 50 ~~~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q 127 (285)
T PRK14254 50 GDEQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQ 127 (285)
T ss_pred CCEeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEec
Confidence 33446667777677777 9999999999999999999876431 110 00 001122333
Q ss_pred CC-----CHHH-----------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 219 TP-----SITK-----------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 219 ~~-----~~~~-----------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
.+ +..+ ....+++.+++. .....+ .+..+..|.+.|..++-+|+||++
T Consensus 128 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 128 KPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred CCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 32 1111 112334444431 011112 344566788888889999999999
Q ss_pred CCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 267 WVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 267 ~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
.+..+.. .+...... +..||++||+...+..++++.
T Consensus 208 ts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEE
Confidence 8775432 22222222 356999999999877766654
No 339
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.40 E-value=1.1e-06 Score=95.12 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~ 223 (333)
..++++...+..|+ +++|+|+||+|||||++.+.+...+... +. .....+++|.. +..
T Consensus 1953 ~aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred eEEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence 35555555556677 9999999999999999999987643210 00 00122333332 111
Q ss_pred ------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-------h
Q 046889 224 ------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-------L 272 (333)
Q Consensus 224 ------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~ 272 (333)
.....+++.+++..... .+ .+..+-.+...|-.++-+++||++.+..| |
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~ 2110 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW 2110 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 11223455555532211 12 23344567888888999999999987644 3
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+.+ ......|..||+|||+.+.+..++++.
T Consensus 2111 ~lL-~~l~~~g~TIILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2111 NTI-VSIIREGRAVVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred HHH-HHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 323 222334788999999999888777665
No 340
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1e-05 Score=74.55 Aligned_cols=163 Identities=13% Similarity=0.160 Sum_probs=89.7
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.+...+..++. +.+.++||.|+||||+|+.+........... ..++..-.....+.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 344556789999999999998887654 4578999999999999999987764211110 00000000111111
Q ss_pred HHhC-----CCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-H
Q 046889 231 GWLG-----IKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-A 295 (333)
Q Consensus 231 ~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v 295 (333)
.... .........++ ...+.+.+ .+++.++|+||+.... .++.+. +..+...+.+|++|.+.. +
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 1000 00000011111 12222222 2345699999987553 233331 122233566777776544 3
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+++.+++.++....+.+.+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHH
Confidence 3333322 38999999999888877644
No 341
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5e-06 Score=80.12 Aligned_cols=169 Identities=14% Similarity=0.184 Sum_probs=92.5
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|...+..++.. .+.++|+.|+||||+++.+.....-...-.... + .++.+..-...+.|.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 3445667899999999999999887653 568999999999999999987764211000000 0 000001011111111
Q ss_pred H-----HhCCCCCCCCCHHHHHHHHHHH----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889 231 G-----WLGIKELPDNDELVRASLLCKR----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-AC 296 (333)
Q Consensus 231 ~-----~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~ 296 (333)
. .+.+........++....+... ..++..++|+|++... ..++.+. +.....++.+|++|++.. +.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 0011000111222222222211 1345679999998754 3344432 222334667777776654 33
Q ss_pred hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889 297 NQMQAHI--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a 322 (333)
..+.++. +.++.++.++..+.+.+.+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 3333333 8999999998888777543
No 342
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=8.5e-06 Score=78.10 Aligned_cols=152 Identities=12% Similarity=0.171 Sum_probs=86.9
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------------CCeE
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------------FDEV 211 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~ 211 (333)
.|.....++|.+..++.|...+..++. +.+.++||.|+||||+|+.+.....-... |...
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344556789999999999999987664 45789999999999999999876532110 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH-HHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEE
Q 046889 212 AMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCK-RIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKF 286 (333)
Q Consensus 212 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~v 286 (333)
+++.........+ .+ ++...+.. -..+++-++|+||+... ..++.+. +..+...+.+
T Consensus 91 ieidaas~~gvd~-ir-----------------~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVEE-TK-----------------EILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHHH-HH-----------------HHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 1111111111111 11 11111111 12346679999998744 2233331 1222235666
Q ss_pred EEeeCChH-HHhhcccce--EecCCCCHHHHHHHHHhh
Q 046889 287 LLTSRSRA-ACNQMQAHI--VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 287 ivTTr~~~-v~~~~~~~~--~~l~~L~~~e~~~lf~~~ 321 (333)
|++|.+.. +...+..+. +.+.+++.++....+.+.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~i 190 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKII 190 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHH
Confidence 66555543 332333333 899999999887777663
No 343
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.38 E-value=6e-07 Score=88.97 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCCC-----H------------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTPS-----I------------ 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~~-----~------------ 222 (333)
..++.+...+.+|+ +++|+|++|+|||||++.+.+...+.+. ++ ......++|.+. .
T Consensus 466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 46777776667777 9999999999999999999987543221 10 011223333320 0
Q ss_pred -------HHHHHHHHHHhCCCCC--------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cC
Q 046889 223 -------TKIQDEIAGWLGIKEL--------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GI 277 (333)
Q Consensus 223 -------~~~~~~i~~~l~~~~~--------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~ 277 (333)
.+-..++++.+++.+. ...+ .+.++-.+.+.+-.++-+++||++.+..|.... .-
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~ 623 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR 623 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1223345555554311 1122 344556788888899999999999877442211 11
Q ss_pred CCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 278 PYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 278 ~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.....|..+|++||+..... .+++.+.++
T Consensus 624 ~l~~~~~tvI~isH~~~~~~-~~d~il~l~ 652 (659)
T TIGR00954 624 LCREFGITLFSVSHRKSLWK-YHEYLLYMD 652 (659)
T ss_pred HHHHcCCEEEEEeCchHHHH-hCCEEEEEe
Confidence 11223778999999998764 455556554
No 344
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1e-05 Score=73.08 Aligned_cols=148 Identities=17% Similarity=0.211 Sum_probs=91.3
Q ss_pred ccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH----hhcCCCeEEEEEe-CCCCCHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK----EKKMFDEVAMAVV-SQTPSITKIQDEIA 230 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~v-~~~~~~~~~~~~i~ 230 (333)
..++|.+...+.+..++..++. +.+.++||.|+||||+|+.++.... ...|++...|... +.....++ ++++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4567888999999999987654 5678999999999999999987642 2234555444331 12222222 22333
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCC--Cchhhhhcc--CCCCCCCcEEEEeeCChHHH-hhccc--ce
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLW--VQIELDRVG--IPYGNDGCKFLLTSRSRAAC-NQMQA--HI 303 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~--~~~~~~g~~vivTTr~~~v~-~~~~~--~~ 303 (333)
+.+... -..+++-++|+|++. +...++.+. +..+..++.+|++|++.+.. ..+.+ ..
T Consensus 83 ~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 332221 112456677888764 333444441 33344588888888876532 22222 23
Q ss_pred EecCCCCHHHHHHHHHhh
Q 046889 304 VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~ 321 (333)
+.+.++++++....+.+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYK 164 (313)
T ss_pred eeCCCcCHHHHHHHHHHH
Confidence 899999999988877654
No 345
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=8.3e-07 Score=77.44 Aligned_cols=59 Identities=3% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 244 LVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+...-.+.+.+..++-+++||++.+..| +..+..... .+..||++||+......++++.
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i 215 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYT 215 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEE
Confidence 3345567788888899999999987644 222222222 3678999999998877766655
No 346
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.37 E-value=9.5e-07 Score=87.00 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=92.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE---------------EEeCCCC------CH-
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM---------------AVVSQTP------SI- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w---------------v~v~~~~------~~- 222 (333)
.++++...+.+|+ +++|+|++|+|||||.+.+.+...........++ .+++|.. ++
T Consensus 40 iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~ 117 (617)
T TIGR00955 40 LLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117 (617)
T ss_pred cccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence 4555555555677 9999999999999999999986543211111111 1222221 11
Q ss_pred --------------------HHHHHHHHHHhCCCCC------------CCCCHHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889 223 --------------------TKIQDEIAGWLGIKEL------------PDNDELVRASLLCKRIEKQRVLVILDDLWVQI 270 (333)
Q Consensus 223 --------------------~~~~~~i~~~l~~~~~------------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 270 (333)
......+++.+++... .-...+..+-.+...|-.++-+++|||+.+..
T Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL 197 (617)
T TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197 (617)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence 1234556666665311 01123445667888888899999999998775
Q ss_pred hh------hhccCCCCCCCcEEEEeeCChH-HHhhcccceEecC------CCCHHHHHHHHHhhccc
Q 046889 271 EL------DRVGIPYGNDGCKFLLTSRSRA-ACNQMQAHIVDVR------TLTEEESWRSAEGKRRV 324 (333)
Q Consensus 271 ~~------~~l~~~~~~~g~~vivTTr~~~-v~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~ 324 (333)
|- ..........|..||+|||.+. ....+.++.+-|. .-+.++....|....+.
T Consensus 198 D~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~ 264 (617)
T TIGR00955 198 DSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHP 264 (617)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCC
Confidence 41 1111122234788999999974 2333333332222 23567788888776544
No 347
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=6.5e-06 Score=78.34 Aligned_cols=168 Identities=13% Similarity=0.147 Sum_probs=91.8
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCCCHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i 229 (333)
.|.....++|.+..+..|...+..++. +-+.++||.|+||||+|+.+............ ..+.. +..-.....+
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~i 91 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCISF 91 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHHH
Confidence 344556789999999999887777653 57889999999999999999887642211100 00000 0000011111
Q ss_pred HHHhC-----CCCCCCCCHHHHHHHHHHH----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEee-CChHH
Q 046889 230 AGWLG-----IKELPDNDELVRASLLCKR----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTS-RSRAA 295 (333)
Q Consensus 230 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTT-r~~~v 295 (333)
..... +........++....+... +.+++.++|+||++.. ..++.+. +..+...+.+|++| +...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 11000 0000111222222221111 2346779999999864 3344442 12223355665544 44444
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhcc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a~ 323 (333)
...+..+ .+.+.+++.++....+.+.+-
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHH
Confidence 4333333 389999999999998887653
No 348
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=7.3e-07 Score=78.50 Aligned_cols=141 Identities=10% Similarity=0.174 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC----------------eEEEEEeCC
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD----------------EVAMAVVSQ 218 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~----------------~~~wv~v~~ 218 (333)
...++.+...+..++ +++|+|++|+|||||++.+.+...+ .+. |+ .....++++
T Consensus 29 ~~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 29 YQALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred eeeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 346666766677777 9999999999999999999876431 010 10 011123333
Q ss_pred CCC-----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889 219 TPS-----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILD 264 (333)
Q Consensus 219 ~~~-----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlD 264 (333)
.+. .. ......+..++.. .....+ .+.....+.+.+..++-+++||
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 186 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 321 10 0111222223321 011112 2344556778888899999999
Q ss_pred CCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 265 DLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 265 dv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
++.+..+. ..+...... +..||++||+.+.+..++++.+.+
T Consensus 187 EPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 187 EPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred CCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 99876442 222222222 567999999999887777666443
No 349
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=8.7e-07 Score=77.44 Aligned_cols=62 Identities=6% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.....+.+.+..++-+++||++.+..|. ..+...... +..||++||+.+.+..++++.+.+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFF 220 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 33455677888888999999999876442 222222222 467999999999887777766444
No 350
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.36 E-value=1.8e-06 Score=73.56 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
..+.|+|+.|+|||.|++.+++.......-..++++. ..++...+...+... ....+...+. .-
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~-~~ 98 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR-SA 98 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC-TS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh-cC
Confidence 4688999999999999999999876432222334442 345555555544321 1223444444 45
Q ss_pred eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~~ 321 (333)
-+|++||+.... .+..+.-.....|.++|+|++... ...++.... +.+++.++++...+++++
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 689999997542 122222222344778999996553 233444444 899999999999999988
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+-
T Consensus 179 a~ 180 (219)
T PF00308_consen 179 AK 180 (219)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=67.63 Aligned_cols=132 Identities=11% Similarity=0.142 Sum_probs=78.6
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC----------------------------CC-----
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS----------------------------QT----- 219 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~----------------------------~~----- 219 (333)
+..++ ++.+.||+|+|||||..-+.+.....-.|...+|+.-. ++
T Consensus 25 ia~Ge--ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl 102 (213)
T COG4136 25 IAKGE--IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL 102 (213)
T ss_pred ecCCc--EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence 34566 99999999999999999999887754444455664211 10
Q ss_pred -CC-----HHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCC-CC
Q 046889 220 -PS-----ITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIP-YG 280 (333)
Q Consensus 220 -~~-----~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~-~~ 280 (333)
++ .......-+.+.++...-..++ +.....+.+.|-..+.+++||++.+..+ +..+.+. ..
T Consensus 103 p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r 182 (213)
T COG4136 103 PATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR 182 (213)
T ss_pred CcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence 01 1223334455555543333332 2234457777778888899999987633 3333221 12
Q ss_pred CCCcEEEEeeCChHHHhhcccceEecC
Q 046889 281 NDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
..|-..|.+||+..-+. .+.++|++.
T Consensus 183 ~agiPtv~VTHD~~Dvp-agsrVie~~ 208 (213)
T COG4136 183 AAGIPTVQVTHDLQDVP-AGSRVIEMA 208 (213)
T ss_pred hcCCCeEEEecccccCC-CCCeeeeee
Confidence 33666888888876544 344445543
No 352
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.35 E-value=8.7e-07 Score=75.65 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------CC----------------eEEEEEeCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------FD----------------EVAMAVVSQT 219 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------f~----------------~~~wv~v~~~ 219 (333)
.+.+|+..+..|. +++++|+||+||||+.+.+.+...+.+. |. ...|.+.+-.
T Consensus 39 AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 39 AVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 5566777677777 9999999999999999998866543221 11 1234443311
Q ss_pred CC--------------HHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889 220 PS--------------ITKIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LD 273 (333)
Q Consensus 220 ~~--------------~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~ 273 (333)
.+ ..+-+..+.+-+++.+. .-+..+.....|...|-.++-+|.||++.-..| +.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 11 01112223333333211 112234456778888888999999998874433 23
Q ss_pred hccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.-.. ...++.|+.|||+-.-...++.+.+.+
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I 230 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI 230 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheEEe
Confidence 332222 233899999999987766666766333
No 353
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1e-06 Score=79.90 Aligned_cols=140 Identities=14% Similarity=0.255 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--C-------------C-eEEEEEeCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--F-------------D-EVAMAVVSQTPS 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f-------------~-~~~wv~v~~~~~ 221 (333)
..++.+...+..|+ +++|+|++|+|||||++.+++.... .+. | . ......+++.+.
T Consensus 96 ~~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 96 HVLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 35666766677777 8999999999999999999976531 111 0 0 001112333321
Q ss_pred -----H---------------HHH----HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 -----I---------------TKI----QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 -----~---------------~~~----~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
. ... ....++.+++. .....+ .+..+..|.+.+..++-+++||++.
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt 253 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1 011 12233444331 011112 3444566888888999999999998
Q ss_pred Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..| +......... ++.||++||+.+.+..++++.+.|
T Consensus 254 s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 254 SALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 7644 2222222222 578999999999887777766444
No 354
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.34 E-value=2.9e-06 Score=74.33 Aligned_cols=138 Identities=15% Similarity=0.216 Sum_probs=77.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~------- 222 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... ++ .....++.+.+..
T Consensus 36 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 36 VLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred ceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 4555555556677 9999999999999999999876432110 00 0001122222110
Q ss_pred ---------HHHHHHHHHHhCC-----------CC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 223 ---------TKIQDEIAGWLGI-----------KE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 223 ---------~~~~~~i~~~l~~-----------~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
..-....+...+. .. ....+ .+.....+.+.+..++-+++||++.+..+
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 193 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0001111111111 10 01122 34455678888888999999999986643
Q ss_pred -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+.... ..+..||++||+...... +++.+.|
T Consensus 194 ~l~~~l~~~-~~~~tiii~sh~~~~~~~-~dri~~l 227 (257)
T cd03288 194 ILQKVVMTA-FADRTVVTIAHRVSTILD-ADLVLVL 227 (257)
T ss_pred HHHHHHHHh-cCCCEEEEEecChHHHHh-CCEEEEE
Confidence 22222222 237889999999998765 4554333
No 355
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.34 E-value=7.1e-06 Score=82.33 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=90.6
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
...+++||+.++..+...|......-+.++|++|+|||++++.+......... ....+|. + +...+.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 45678999999999999887665556789999999999999999988643221 1233342 1 111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCc----------hhhhhccCCCCCCCc-EEEEeeCChH----
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQ----------IELDRVGIPYGNDGC-KFLLTSRSRA---- 294 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~l~~~~~~~g~-~vivTTr~~~---- 294 (333)
.. .......++....+.+.+. .++.+|++|++... .+...+..|.-..|. .+|-+|...+
T Consensus 251 a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 251 AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 00 0011122333334444433 46789999998632 122233344433443 4455554322
Q ss_pred ------HHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 295 ------ACNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 295 ------v~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+..++ ..+.++.++.++..+++++..
T Consensus 327 ~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRF--QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence 12223 238999999999999998543
No 356
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.34 E-value=6e-07 Score=87.05 Aligned_cols=127 Identities=12% Similarity=0.149 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCCCH------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTPSI------ 222 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~~~------ 222 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+.+. ++. .....++|++.+
T Consensus 348 ~~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVR 425 (529)
T ss_pred CceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHH
Confidence 346777877777888 9999999999999999999876544321 111 012345554310
Q ss_pred -----------HHHHHHHHHHhCCCC----------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889 223 -----------TKIQDEIAGWLGIKE----------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD- 273 (333)
Q Consensus 223 -----------~~~~~~i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~- 273 (333)
++-+.+.++..+..+ ....+ .+.++-.+.+.+-.++-+++|||+.+..|-.
T Consensus 426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111223333333210 01112 3444567888888999999999998774421
Q ss_pred -----hccCCCCCCCcEEEEeeCC
Q 046889 274 -----RVGIPYGNDGCKFLLTSRS 292 (333)
Q Consensus 274 -----~l~~~~~~~g~~vivTTr~ 292 (333)
..... ...+..+|++||.
T Consensus 506 e~~I~~~l~~-~~~~~TvIiItHr 528 (529)
T TIGR02868 506 ESELLEDLLA-ALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHH-hcCCCEEEEEecC
Confidence 11122 2236788998885
No 357
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=4.5e-07 Score=78.94 Aligned_cols=127 Identities=13% Similarity=0.231 Sum_probs=82.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------------------CCCeEEEEEeCCCC---
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------------MFDEVAMAVVSQTP--- 220 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------------~f~~~~wv~v~~~~--- 220 (333)
.++ +..|.|.+|+|||||++++....++.. .|...-|-+|-++.
T Consensus 53 ~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG 130 (386)
T COG4175 53 EGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG 130 (386)
T ss_pred CCe--EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence 455 899999999999999999986554321 22222222222111
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC
Q 046889 221 ---------SITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY 279 (333)
Q Consensus 221 ---------~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~ 279 (333)
.-.......++..|+.++....+ .++.-.|.+.|...+-+|++|++.+..+ ..+-.+.+
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 11334456677777765544433 3456679999999999999999987643 11111222
Q ss_pred -CCCCcEEEEeeCChHHHhhcccce
Q 046889 280 -GNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 280 -~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
...+-.|+++||+-+.|-++++++
T Consensus 211 q~~l~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 211 QAKLKKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred HHHhCCeEEEEecCHHHHHhccceE
Confidence 122567999999999999888877
No 358
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1e-05 Score=76.62 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=86.9
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+.....|...+..++. +.+.++||.|+||||+|+.+........... . .++..-.....+.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~------~-~pc~~c~~c~~i~ 81 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG------V-EPCNECRACRSID 81 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC------C-CCCcccHHHHHHh
Confidence 344567789999988888888877765 4578999999999999999987754211100 0 0000000011110
Q ss_pred HHh-----CCCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhccCCC--CCCCcEEEEeeCCh-HH
Q 046889 231 GWL-----GIKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVGIPY--GNDGCKFLLTSRSR-AA 295 (333)
Q Consensus 231 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~g~~vivTTr~~-~v 295 (333)
..- ..........+... .+.+. ..+++-++|+|++... .....+.-.. ....+.+|++|.++ .+
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence 000 00000011122211 22222 2245679999998644 2233331111 12244455555443 33
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+.+.+++.++....+.+.+
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 3333333 38999999999888887765
No 359
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=9e-06 Score=79.19 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=91.5
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+.....-...+. ...+..-..++.|.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 3445667899999999999999887753 468999999999999999987764321110 00111111222221
Q ss_pred HHh-----CCCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-H
Q 046889 231 GWL-----GIKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-A 295 (333)
Q Consensus 231 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v 295 (333)
..- ..........++.. .+.+. ..++..++|+|++... ..++.+. +..+...+++|++|.+.. +
T Consensus 84 ~g~~~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred cCCCCCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 00000011122222 12222 2346679999998754 2333331 222233566666666544 3
Q ss_pred Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQA--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
...+.+ ..+.+++|+.++....+.+..
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 222332 339999999999988887653
No 360
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.32 E-value=4.9e-06 Score=84.34 Aligned_cols=152 Identities=13% Similarity=0.194 Sum_probs=90.0
Q ss_pred cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEE-EeCCCCCHHHHHHH
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMA-VVSQTPSITKIQDE 228 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv-~v~~~~~~~~~~~~ 228 (333)
....+++||+.++..++..|......-+.++|++|+||||+++.+......... ....+|. .++. +
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l--- 254 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L--- 254 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h---
Confidence 345688999999999999887765556789999999999999999987653221 1122331 1111 0
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch---------hhhhccCCCCCCC-cEEEEeeCChHH-
Q 046889 229 IAGWLGIKELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI---------ELDRVGIPYGNDG-CKFLLTSRSRAA- 295 (333)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~g-~~vivTTr~~~v- 295 (333)
.-..............+.+.+. .++.+|++|++.... +...+..|.-..| -++|-+|...+.
T Consensus 255 -----~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 255 -----QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYK 329 (852)
T ss_pred -----hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHh
Confidence 0000011112222222333222 367999999886431 2222344544444 355556654322
Q ss_pred ---------HhhcccceEecCCCCHHHHHHHHHhh
Q 046889 296 ---------CNQMQAHIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 296 ---------~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (333)
..++ ..+.+.+++.++..++++..
T Consensus 330 ~~~~~d~AL~rRf--~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 330 KYFEKDPALTRRF--QVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred hhhhccHHHHHhC--eEEEeCCCCHHHHHHHHHHH
Confidence 2222 24999999999999997543
No 361
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.4e-05 Score=77.21 Aligned_cols=163 Identities=11% Similarity=0.109 Sum_probs=90.9
Q ss_pred cccccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+...+.|..++..++ .+.+.++|+.|+||||+|+.+.....-.... .. ..+..-...+.+.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~------~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGV------TS-TPCEVCATCKAVN 82 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC------CC-CCCccCHHHHHHh
Confidence 34456778999999999999998776 3577899999999999999998775321110 00 0001001111111
Q ss_pred HHhC-----CCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-
Q 046889 231 GWLG-----IKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA- 295 (333)
Q Consensus 231 ~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v- 295 (333)
..-. .........++.+. +... ..++..++|+|++... ..+..+. +.....++.+|++|++..-
T Consensus 83 ~g~hpDviEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 1000 00000111222211 1111 1346679999999754 2333331 2222346678888876542
Q ss_pred Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQA--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
...+.. ..+++++++.++....+.+.+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence 212222 238999999999888777654
No 362
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.31 E-value=5.9e-07 Score=87.38 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC----eEEEEEeCCCCC------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD----EVAMAVVSQTPS------ 221 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~----~~~wv~v~~~~~------ 221 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+... ++ ......++|++.
T Consensus 336 ~~~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 413 (547)
T PRK10522 336 GFSVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL 413 (547)
T ss_pred CeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh
Confidence 346777777777788 9999999999999999999876543210 00 001123333321
Q ss_pred -------HHHHHHHHHHHhCCCCC----------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh-------cc
Q 046889 222 -------ITKIQDEIAGWLGIKEL----------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR-------VG 276 (333)
Q Consensus 222 -------~~~~~~~i~~~l~~~~~----------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~-------l~ 276 (333)
..+...+.++.++.... ...+ .+.++-.+.+.+-.++-+++|||+.+..|... +.
T Consensus 414 ~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 414 GPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred ccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 12234455666655311 1122 34455678889999999999999987644221 11
Q ss_pred CCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 277 IPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 277 ~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
......+..+|++||+...... +++.+.+
T Consensus 494 ~~~~~~~~tvi~itH~~~~~~~-~d~i~~l 522 (547)
T PRK10522 494 PLLQEMGKTIFAISHDDHYFIH-ADRLLEM 522 (547)
T ss_pred HHHHhCCCEEEEEEechHHHHh-CCEEEEE
Confidence 1112236779999998876543 4444444
No 363
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=5.9e-08 Score=78.96 Aligned_cols=144 Identities=16% Similarity=0.229 Sum_probs=90.6
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE-------------------EEeCC
Q 046889 158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM-------------------AVVSQ 218 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-------------------v~v~~ 218 (333)
+-|+...+++.+...+.+++ +|++.||||+||||..-.+.+-.+++. ..+| .+.+|
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHHHhhcCcccccc
Confidence 34555566666666667788 999999999999996555544333221 1111 12333
Q ss_pred CCCH------H--------------------HHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCC
Q 046889 219 TPSI------T--------------------KIQDEIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 219 ~~~~------~--------------------~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
.+++ + .-+.++++.|.+.. ..-+.-+.....+.+.|...+.+++||++
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 3211 1 11335555555431 11122455667899999999999999988
Q ss_pred CCc------hhhhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 267 WVQ------IELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 267 ~~~------~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
... .+...+...+...|--|+||-||-.-...++++.|.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE
Confidence 654 4455555555666888999999988776777666433
No 364
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.31 E-value=1.8e-06 Score=68.61 Aligned_cols=143 Identities=10% Similarity=0.161 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-------C--C--------------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-------P--S-------------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-------~--~-------------- 221 (333)
.++.+......++ .+.+.|++|+|||||++.+|....++. ..+|+.-... . .
T Consensus 26 V~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 26 VLRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 3445555556677 788999999999999999998876543 3344321111 0 0
Q ss_pred ---------------------------HHHHHHHHHHHhCCCC----CCCC---CHHHHHHHHHHHHccCceEEEEeCCC
Q 046889 222 ---------------------------ITKIQDEIAGWLGIKE----LPDN---DELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 222 ---------------------------~~~~~~~i~~~l~~~~----~~~~---~~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
.....+.++.+++++. ..+. ..+++.-.|.+-+--.--+|+||++.
T Consensus 101 FLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPT 180 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180 (235)
T ss_pred HHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCc
Confidence 0112233444444431 1111 11222233333333344478899887
Q ss_pred Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecCCCCHH
Q 046889 268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEE 312 (333)
Q Consensus 268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~L~~~ 312 (333)
...| .-.+....+..|+.+|=+=|++++-+.++++.+.+...++.
T Consensus 181 asLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~~~~~ 231 (235)
T COG4778 181 ASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSAFSPR 231 (235)
T ss_pred ccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecccCCcc
Confidence 5533 33333444566999999999999988888888888776543
No 365
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.30 E-value=5.3e-06 Score=69.57 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhh------c-----------C----CCeEEEEEeCCCCCH------HHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEK------K-----------M----FDEVAMAVVSQTPSI------TKIQDEIAGW 232 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~------~-----------~----f~~~~wv~v~~~~~~------~~~~~~i~~~ 232 (333)
+++|+|+||+|||||++.++.-.... . . ........+.|+++. ..-..++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 78999999999999999987543211 0 0 000111223333321 1223344444
Q ss_pred hCCCC--CCCCCH-HHHHHHHHHHHc----cCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhc
Q 046889 233 LGIKE--LPDNDE-LVRASLLCKRIE----KQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 233 l~~~~--~~~~~~-~~~~~~l~~~l~----~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~ 299 (333)
-+... ....+. +.....+...+. ..+-+++||++.+..+. ..+...... +..||++||+.+... .
T Consensus 104 ~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~ 181 (197)
T cd03278 104 PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTME-A 181 (197)
T ss_pred CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-h
Confidence 11111 111122 223334555443 45579999999876442 222222222 567999999998865 4
Q ss_pred ccceE
Q 046889 300 QAHIV 304 (333)
Q Consensus 300 ~~~~~ 304 (333)
++..+
T Consensus 182 ~d~v~ 186 (197)
T cd03278 182 ADRLY 186 (197)
T ss_pred cceEE
Confidence 45443
No 366
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.30 E-value=5.5e-07 Score=97.42 Aligned_cols=140 Identities=12% Similarity=0.205 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CH
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SI 222 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~ 222 (333)
...++.+...+..|+ +++|+|+||+|||||++.+.+...+... +.. .....++|.. +.
T Consensus 943 k~aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 943 RPAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred ceEEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCH
Confidence 345666666666777 9999999999999999999987543210 000 0011223321 11
Q ss_pred ------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-------
Q 046889 223 ------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------- 271 (333)
Q Consensus 223 ------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------- 271 (333)
..-...+++.+++..... .+ .+..+-.+...|..++-+++||++.+..|
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 112334566666642211 12 33445668888888999999999987644
Q ss_pred hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|+.+ .... .|..||+|||+.+.+..++++.+.|
T Consensus 1101 ~~lL-~~l~-~g~TIIltTHdmdea~~laDrI~iL 1133 (2272)
T TIGR01257 1101 WDLL-LKYR-SGRTIIMSTHHMDEADLLGDRIAII 1133 (2272)
T ss_pred HHHH-HHHh-CCCEEEEEECCHHHHHHhCCEEEEE
Confidence 2222 2222 3778999999999988887777444
No 367
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.30 E-value=1e-06 Score=85.69 Aligned_cols=141 Identities=17% Similarity=0.170 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------- 220 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. .....++|.+
T Consensus 331 ~~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 331 KPTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred ccccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 356777777777788 9999999999999999999877543221 100 0112233332
Q ss_pred -----------CHHHHH--------HHHHHHhC--CC------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh--
Q 046889 221 -----------SITKIQ--------DEIAGWLG--IK------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-- 271 (333)
Q Consensus 221 -----------~~~~~~--------~~i~~~l~--~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-- 271 (333)
+.+++. .+.++.+. .. ...-...+.++-.+.+.+-.++-+++|||+.+..|
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 112211 12233331 11 01112234456678888888999999999987644
Q ss_pred ----hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 ----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..........|..+|++||+...... .++.+.+
T Consensus 489 ~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~-~d~i~~l 526 (544)
T TIGR01842 489 GEQALANAIKALKARGITVVVITHRPSLLGC-VDKILVL 526 (544)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 222212222246789999999887653 4555544
No 368
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.30 E-value=2.1e-06 Score=86.16 Aligned_cols=140 Identities=11% Similarity=0.165 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC----eEEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD----EVAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~----~~~wv~v~~~~------- 220 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+.+. ++ .....+++|++
T Consensus 492 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 492 PPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred CCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 356778877777788 9999999999999999999877654321 00 01122334433
Q ss_pred -----------CHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -----------SITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.++ +.+.++..+.. +..-...+.++-.+.+.+-.++-+++|||+.+..|-
T Consensus 570 ~eNi~l~~~~~~~~~-i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~ 648 (710)
T TIGR03796 570 RDNLTLWDPTIPDAD-LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648 (710)
T ss_pred HHHhhCCCCCCCHHH-HHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCH
Confidence 1122 22223322221 111112344566788888899999999999877442
Q ss_pred hh---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 DR---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~~---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.. +.-.+...++.+|++||....... .++.+.|
T Consensus 649 ~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl 684 (710)
T TIGR03796 649 ETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVL 684 (710)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEE
Confidence 11 100111247789999999887655 4444444
No 369
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.30 E-value=3.9e-06 Score=70.43 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+++|+||||+|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 499999999999999999998655
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.30 E-value=2e-06 Score=77.37 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=92.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe----------------EEEE-------EeCCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE----------------VAMA-------VVSQT 219 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~----------------~~wv-------~v~~~ 219 (333)
.++.+...|..++ .++|||.+|+|||||.+.+......++. |.. .+-+ +.++-
T Consensus 302 AVd~isl~L~~gq--TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 302 AVDGISLTLRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EeccceeEecCCC--eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 3566666677777 8999999999999999999877654321 110 0001 11111
Q ss_pred CCH-----------------HHH---HHHHHHHhCCCC-------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889 220 PSI-----------------TKI---QDEIAGWLGIKE-------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE- 271 (333)
Q Consensus 220 ~~~-----------------~~~---~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 271 (333)
-++ .+- ....+...|+++ .+-...+.....|.+.+--|+-+++||++.+..|
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 111 111 222344445531 1112234456678899999999999999998754
Q ss_pred -----hhhccCC-CCCCCcEEEEeeCChHHHhhcccceEecCC---CCHHHHHHHHH
Q 046889 272 -----LDRVGIP-YGNDGCKFLLTSRSRAACNQMQAHIVDVRT---LTEEESWRSAE 319 (333)
Q Consensus 272 -----~~~l~~~-~~~~g~~vivTTr~~~v~~~~~~~~~~l~~---L~~~e~~~lf~ 319 (333)
.-.+... ....|-..+++||+..|...++...+.|+. .....+.++|.
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 1122111 133477799999999999999988865543 34444555554
No 371
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.29 E-value=2.4e-06 Score=83.87 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------- 220 (333)
..++.+...+..|+ .++|+|++|+|||||++.+.+...+... ++. ....+++|++
T Consensus 357 ~il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 357 PALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred ccccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 46777777777788 8999999999999999999987654321 100 1122334432
Q ss_pred -----------CHHHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -----------SITKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.++ +...++..+.. + ....+ .+.++-.+.+.+-.++-+++||++.+..|-
T Consensus 435 ~Ni~~~~~~~~~~~~-i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~ 513 (582)
T PRK11176 435 NNIAYARTEQYSREQ-IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_pred HHHhcCCCCCCCHHH-HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 1111 22222322211 0 01122 344566788888889999999999877442
Q ss_pred h------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ...... ..++.+|++||+...... .+..+.+
T Consensus 514 ~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~-~D~Ii~l 551 (582)
T PRK11176 514 ESERAIQAALDEL-QKNRTSLVIAHRLSTIEK-ADEILVV 551 (582)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEE
Confidence 2 111211 236789999999987654 4444444
No 372
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=5.1e-06 Score=77.79 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=90.4
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..+..|..++..++.. .+.++||.|+||||+|+.+.....-...... ..+..... ...+.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~ 85 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT 85 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence 3445667899999999999999888753 5799999999999999999877542111000 00001111 11111
Q ss_pred HHhCC-----CCCCCCCHHH---HHHHHHH-HHccCceEEEEeCCCCc--hhhhhccCCC--CCCCcEEEEeeCC-hHHH
Q 046889 231 GWLGI-----KELPDNDELV---RASLLCK-RIEKQRVLVILDDLWVQ--IELDRVGIPY--GNDGCKFLLTSRS-RAAC 296 (333)
Q Consensus 231 ~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~g~~vivTTr~-~~v~ 296 (333)
..... ........+. +...+.. ...++..++|+|++... ..++.+.-.+ +...+.+|++|.+ ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 11100 0001111111 1122211 12345679999999754 3344442211 2235555555554 3343
Q ss_pred hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889 297 NQMQAHI--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a 322 (333)
..+..+. |.+.+++.++..+.+.+.+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 3343333 8999999988888777654
No 373
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.27 E-value=1.2e-06 Score=85.96 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------- 220 (333)
...++++...+.+|+ .++|+|++|+|||||++.+.+...+... ++. ....+++|++
T Consensus 348 ~~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425 (588)
T ss_pred CceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccH
Confidence 456788887777888 8999999999999999999877654321 000 0112234432
Q ss_pred -----------CHHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -----------SITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.++ +...++..+. + .....+ .+.++-.+.+.+-.++-+++||++.+..|-
T Consensus 426 ~~Ni~~~~~~~~d~~-i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~ 504 (588)
T PRK13657 426 EDNIRVGRPDATDEE-MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDV 504 (588)
T ss_pred HHHHhcCCCCCCHHH-HHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 1122 2222222221 1 001122 344556788888889999999999877442
Q ss_pred h------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ...... ..+..+|++||+...... .++.+.+
T Consensus 505 ~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~~-~D~ii~l 542 (588)
T PRK13657 505 ETEAKVKAALDEL-MKGRTTFIIAHRLSTVRN-ADRILVF 542 (588)
T ss_pred HHHHHHHHHHHHH-hcCCEEEEEEecHHHHHh-CCEEEEE
Confidence 2 111211 236779999999887654 4444444
No 374
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.26 E-value=3.1e-06 Score=83.79 Aligned_cols=137 Identities=13% Similarity=0.200 Sum_probs=82.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C--------eEEEEEeCCCCC----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D--------EVAMAVVSQTPS---- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~--------~~~wv~v~~~~~---- 221 (333)
.++.+...+.+++ +++|+|++|+|||||++.+.+...+... | . ......+++.+.
T Consensus 23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 23 VLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 4555555566777 9999999999999999999977543210 0 0 011222333221
Q ss_pred --H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 222 --I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 222 --~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
. .....++++.+++... ...+ .+...-.+.+.|..++-+++||++....|
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 0 0112334555555321 1112 34456678888889999999999986644
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
+..+.......|..+|++||+.+.... +++.+
T Consensus 181 ~~l~~ll~~l~~~g~tilivsH~~~~~~~-~d~i~ 214 (648)
T PRK10535 181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVI 214 (648)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHh-CCEEE
Confidence 222222223347889999999998764 44443
No 375
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.26 E-value=4.7e-06 Score=70.27 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-hh-cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK-EK-KMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR 253 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 253 (333)
.+++|+|+||+|||||++.+....- .+ +.|...-+..++. ..+++..++..+ ........-...+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~-------~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i 102 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPL-------VDRIFTRIGAEDSISDGRSTFMAELLELKEI 102 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCC-------cCEEEEEecCcccccCCceeHHHHHHHHHHH
Confidence 4899999999999999999984432 11 1111111111111 001111111110 0111111112223333
Q ss_pred H--ccCceEEEEeCCCCchhh-------hhccCCCCCCCcEEEEeeCChHHHhhcc
Q 046889 254 I--EKQRVLVILDDLWVQIEL-------DRVGIPYGNDGCKFLLTSRSRAACNQMQ 300 (333)
Q Consensus 254 l--~~k~~LlVlDdv~~~~~~-------~~l~~~~~~~g~~vivTTr~~~v~~~~~ 300 (333)
+ ...+.++++|++....+. ..+.......++.+|++||+.++...+.
T Consensus 103 ~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 103 LSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred HHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence 3 358899999999654321 1111112234788999999998876554
No 376
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.6e-05 Score=74.01 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=90.4
Q ss_pred ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE-eCCCCCHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV-VSQTPSITKIQDEIA 230 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~ 230 (333)
|.....++|.+...+.|..++..++.. -+.++||.|+||||+|+.+.....-........|.. ....+..-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 445567889999999999999887654 488999999999999999987764221111111110 001111111111111
Q ss_pred HHhCCC-----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCC-hHH
Q 046889 231 GWLGIK-----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRS-RAA 295 (333)
Q Consensus 231 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~-~~v 295 (333)
..-... .......++.. .+.+.+ .+++-++|+||+... ..++.+. +..+...+.+|++|.+ ..+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 110000 00111122222 233333 245668999998644 2333331 2222335666665543 333
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+++.++++++....+.+.+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 3333322 28899999988887777654
No 377
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.26 E-value=1.8e-06 Score=86.49 Aligned_cols=140 Identities=14% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC----eEEEEEeCCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD----EVAMAVVSQTPS------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~----~~~wv~v~~~~~------- 221 (333)
..++++...+.+|+ .++|+|++|+|||||++.+.+...+.+. ++ ......++|++.
T Consensus 495 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 495 PVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 46777887777888 9999999999999999999987654321 00 001233444321
Q ss_pred ----------HHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889 222 ----------ITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR 274 (333)
Q Consensus 222 ----------~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 274 (333)
.++-+.+.++..+.. .....+ .+.++-.+.+.+-.++-+++|||+.+..|-..
T Consensus 573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 112222333333321 001122 34455668888889999999999987644211
Q ss_pred ---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 ---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 ---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.......+..+|++||....... .+.++.+
T Consensus 653 e~~i~~~~~~~~~TvIiItHrl~~i~~-aD~IivL 686 (711)
T TIGR00958 653 EQLLQESRSRASRTVLLIAHRLSTVER-ADQILVL 686 (711)
T ss_pred HHHHHHhhccCCCeEEEEeccHHHHHh-CCEEEEE
Confidence 111111236789999999887654 3444444
No 378
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.25 E-value=1e-05 Score=75.06 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=56.6
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD 227 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 227 (333)
...++.+..++.+...+..++ .+.+.||+|+|||++|+.++........+....|+.+++..+..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 456777888999999888766 788899999999999999998876555677888999998887666553
No 379
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=9.4e-06 Score=76.60 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
.-+.|+|+.|+|||.|++.+.+.......-..++++ + ..++...+...++... .....+.+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv--~----~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM--S----GDEFARKAVDILQKTH-------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE--E----HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence 358899999999999999999876532221223333 2 2456666665554310 11223444443 45
Q ss_pred eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~~ 321 (333)
.+||+||+.... .+..+.-.....|..||+|+.... +..++.... +.+++++.++..+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996431 122221122333567888876542 122333333 789999999999999988
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+-
T Consensus 288 ~~ 289 (450)
T PRK14087 288 IK 289 (450)
T ss_pred HH
Confidence 74
No 380
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.25 E-value=1.5e-06 Score=85.36 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------- 220 (333)
...++++...+.+|+ .++|+|++|+|||||++.+.+.. +... ++. .....++|++
T Consensus 363 ~~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 363 KTLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence 345677776667777 99999999999999999998776 3221 000 0123444443
Q ss_pred -----------CHHHHHH--------HHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 221 -----------SITKIQD--------EIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 221 -----------~~~~~~~--------~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+.+++.+ +.+..+ |.+ .....+ .+.++-.|.+.+-.++-+++|||+.+..|-.
T Consensus 440 ~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 2222211 112222 111 001122 3445667888888899999999998774422
Q ss_pred h------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 R------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ..... ..+..+|++||....... .+..+.+
T Consensus 520 te~~i~~~l~~~-~~~~TvIiItHrl~~i~~-aD~Iivl 556 (588)
T PRK11174 520 SEQLVMQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVM 556 (588)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEecChHHHHh-CCEEEEE
Confidence 1 11111 235678999998877654 3444444
No 381
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2e-05 Score=76.63 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=90.3
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCC--CeEEEEEeCCCCCHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMF--DEVAMAVVSQTPSITKIQDE 228 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~ 228 (333)
.|.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+.....-.... ..... ..+..-...+.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 344566789999999999999988765 456899999999999999997665321100 00000 01111111222
Q ss_pred HHHH-----hCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-
Q 046889 229 IAGW-----LGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR- 293 (333)
Q Consensus 229 i~~~-----l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~- 293 (333)
|... +.+........++... +.+.. .++..++|||++... ..++.+. +......+.+|++|.+.
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 2110 0000001111222222 22221 134569999999754 3344432 22223366677666543
Q ss_pred HHHhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889 294 AACNQMQA--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 294 ~v~~~~~~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
.+...+.. ..+.++++++++....+.+.+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 33222322 338999999999888887654
No 382
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.23 E-value=4.6e-05 Score=64.02 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=37.8
Q ss_pred cccccccccchHHHHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMK-----DEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.|.....|+|.+..++.+.-.+. .+.+.-+.++||+|+||||||+.+.+...
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 45567889999999888765543 23466789999999999999999998876
No 383
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.1e-05 Score=79.11 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=88.3
Q ss_pred ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
|.....++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+...+.-...... ..+..-..++.|..
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~ 83 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP 83 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence 444567899999999999999887654 5789999999999999999877642111100 00000000111110
Q ss_pred H-------hCCCCCCCCCHHHHHHHHHH-----HHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-
Q 046889 232 W-------LGIKELPDNDELVRASLLCK-----RIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA- 294 (333)
Q Consensus 232 ~-------l~~~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~- 294 (333)
. +.+........++... +.+ -..++..++|||++... ..++.|. +......+.+|++|.+.+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0 0000001111222221 222 12356678999998754 2333331 222223666666665443
Q ss_pred HHhhcccce--EecCCCCHHHHHHHHHhh
Q 046889 295 ACNQMQAHI--VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 295 v~~~~~~~~--~~l~~L~~~e~~~lf~~~ 321 (333)
+...+.++. |.+.+++.++....+.+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence 443344333 889999988887777654
No 384
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=9.1e-06 Score=74.93 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
...+.|.+..++.|...+.. ...+-+.|+||+|+|||+||+.+++... ..| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch----
Confidence 34578889988888776631 1234689999999999999999998764 222 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCch----------------hhhhccCC---C-CC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQI----------------ELDRVGIP---Y-GN 281 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~---~-~~ 281 (333)
..+... .++ ........+.+.. ...+.+|+|||++... .+..+... + ..
T Consensus 190 ~~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRK---YIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHH---hhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111 011 0111222222222 3467899999986431 12222111 1 12
Q ss_pred CCcEEEEeeCChHHHh-hc-c----cceEecCCCCHHHHHHHHHhhccc
Q 046889 282 DGCKFLLTSRSRAACN-QM-Q----AHIVDVRTLTEEESWRSAEGKRRV 324 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~-~~-~----~~~~~l~~L~~~e~~~lf~~~a~~ 324 (333)
.+..||.||+..+... .+ . ...+.+...+.++..++|+.++..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 3667888888654321 11 1 223889999999999999987654
No 385
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.22 E-value=4.1e-05 Score=68.51 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=103.5
Q ss_pred ccccchHHHHHHHHHHhhcCCc---eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889 157 YNFKSRESTMKDIMEAMKDEKV---SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL 233 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 233 (333)
+.+.+|+.+...+...+.+..+ .++-|.|..|.|||.+++.+++... ...+|+.+-+.++...+++.|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 4677899999999998876543 4568899999999999999998763 3467999999999999999999998
Q ss_pred CCCCCCCCCH-------HHHHHHHHH--HHc--cCceEEEEeCCCCchhhhhccCC--------CCCCCcEEEEeeCChH
Q 046889 234 GIKELPDNDE-------LVRASLLCK--RIE--KQRVLVILDDLWVQIELDRVGIP--------YGNDGCKFLLTSRSRA 294 (333)
Q Consensus 234 ~~~~~~~~~~-------~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l~~~--------~~~~g~~vivTTr~~~ 294 (333)
+..+...... ......+.+ ... ++..+||||++....|.....++ .+.+...|++.....+
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 7432221111 112222333 122 35789999998766554433221 1222343444333322
Q ss_pred H--Hhhcccce---EecCCCCHHHHHHHHHhh
Q 046889 295 A--CNQMQAHI---VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 295 v--~~~~~~~~---~~l~~L~~~e~~~lf~~~ 321 (333)
- ...++... +....-+.+|...++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 22234433 667777888888877654
No 386
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.3e-05 Score=73.06 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=89.0
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|...+..++.. -+.++|+.|+||||+|+.+.....-..... ..++..-.....|.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-------~~pCg~C~~C~~i~ 80 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPT-------SDPCGTCHNCISIK 80 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC-------CCCccccHHHHHHh
Confidence 3445567899999999999888877654 688999999999999999976542111000 00001111111111
Q ss_pred HHhCCC-----CCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCC-hHH
Q 046889 231 GWLGIK-----ELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRS-RAA 295 (333)
Q Consensus 231 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~-~~v 295 (333)
+....+ .......++... +.+. +.++..++|+|++... ..++.+. +..+...+.+|++|.+ ..+
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 111110 000111222111 1111 1246679999998644 2333331 2222336666666644 344
Q ss_pred Hhhcccce--EecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAHI--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~~--~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+. +.+.+++.++....+.+.+
T Consensus 160 ~~tI~SRc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred HHHHHHhheeeecccccHHHHHHHHHHHH
Confidence 33333333 8899999988888777654
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.22 E-value=1.6e-06 Score=73.02 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQ 199 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~ 199 (333)
+++.|+||||+|||||++.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 589999999999999999987
No 388
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.22 E-value=1.3e-06 Score=84.99 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~------- 221 (333)
..++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. .....++|++.
T Consensus 356 ~~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 356 FALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433 (555)
T ss_pred ceeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence 36777777777788 9999999999999999999876543211 000 00112233221
Q ss_pred -------HHHHHHHHHHHhCCCCC-----------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h-hhc
Q 046889 222 -------ITKIQDEIAGWLGIKEL-----------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L-DRV 275 (333)
Q Consensus 222 -------~~~~~~~i~~~l~~~~~-----------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~-~~l 275 (333)
..+-..+.++.++..+. ...+ .+..+-.+.+.+-.++-+++||++.+..| + ..+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 12233455666665421 1122 34445578888889999999999987643 1 112
Q ss_pred cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.......|..+|++||+..... .++..+.+
T Consensus 514 ~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l 543 (555)
T TIGR01194 514 LPDLKRQGKTIIIISHDDQYFE-LADQIIKL 543 (555)
T ss_pred HHHHHhCCCEEEEEeccHHHHH-hCCEEEEE
Confidence 1112234678999999987654 44555544
No 389
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.9e-05 Score=75.58 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=87.0
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|..++..++.. .+.++||.|+||||+|+.+.....-...+.. ..+..-...+.|.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~ 83 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREID 83 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHh
Confidence 3445667899999999999999877654 4789999999999999999877642211110 0000000111110
Q ss_pred HHh-----CCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-H
Q 046889 231 GWL-----GIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-A 295 (333)
Q Consensus 231 ~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v 295 (333)
..- ..........++... +.+.+ .++..++|+|++... ..++.+. +..+...+.+|++|.+.. +
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl 162 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKL 162 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhc
Confidence 000 000001111222211 11111 245679999999754 2333331 222233677777665543 2
Q ss_pred Hhhcccce--EecCCCCHHHHHHHHHhh
Q 046889 296 CNQMQAHI--VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 296 ~~~~~~~~--~~l~~L~~~e~~~lf~~~ 321 (333)
...+..+. +++++++.++....+.+.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 163 PVTVLSRCLQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred hHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence 22233222 788999888766654443
No 390
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=9.2e-07 Score=74.46 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHH-
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND---ELVRASLLCKRI- 254 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l- 254 (333)
.++.|+|++|.||||+++.+....--. +..+ ++.. .... -.+.+.|+..++..+..... ...-...+...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la-~~G~--~vpa-~~~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA-QIGC--FVPA-EYAT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH-HcCC--Ccch-hhcC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 489999999999999999987553211 1111 1100 0011 12233444444443211111 111111222222
Q ss_pred -ccCceEEEEeCCCCc---hhhh----hccCCCCCCCcEEEEeeCChHHHhhccc
Q 046889 255 -EKQRVLVILDDLWVQ---IELD----RVGIPYGNDGCKFLLTSRSRAACNQMQA 301 (333)
Q Consensus 255 -~~k~~LlVlDdv~~~---~~~~----~l~~~~~~~g~~vivTTr~~~v~~~~~~ 301 (333)
..++.|+++|++... .+-. .+...+...|+.+|++||+.+++..+..
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 357889999998543 2211 1111223348899999999999876653
No 391
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=7.2e-06 Score=77.24 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
.-+.|+|+.|+|||+|++.+++.......-..+.|+. ..+++..+...+... .. ..+.+.+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~-----~~----~~f~~~~~~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG-----KL----NEFREKYRKKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHhcc-----cH----HHHHHHHHhcC
Confidence 3589999999999999999999875322112334443 244555555554321 11 22344444456
Q ss_pred eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEee-CChHHHh--------hcccc-eEecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTS-RSRAACN--------QMQAH-IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTT-r~~~v~~--------~~~~~-~~~l~~L~~~e~~~lf~~~ 321 (333)
.+|++||+.... .+..+.......|..+|+|| +.+.-.. ++... .+.+++.+.+.-..+++++
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 799999997431 22222111223355688877 4443322 22222 2789999999999999888
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+-
T Consensus 276 ~~ 277 (440)
T PRK14088 276 LE 277 (440)
T ss_pred HH
Confidence 64
No 392
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.22 E-value=1.1e-05 Score=69.32 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHccCc--eEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQR--VLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~--~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.....+...+..++ -+++||++.+..+ +..+.......|..||++||+.+.+. ++++.+.|
T Consensus 142 ~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l 211 (226)
T cd03270 142 EAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDI 211 (226)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEe
Confidence 344556777777665 6999999986644 22222222334778999999999875 56666666
No 393
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.22 E-value=2.5e-06 Score=83.94 Aligned_cols=139 Identities=13% Similarity=0.154 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------ 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------ 222 (333)
..++++...+.+|+ .++|+|++|+|||||++.+.+...+.+. ++. .....++|++.+
T Consensus 355 ~il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 355 LVLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (592)
T ss_pred ceeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence 46777777777788 9999999999999999999877654321 110 112334444311
Q ss_pred ----------HHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh-
Q 046889 223 ----------TKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR- 274 (333)
Q Consensus 223 ----------~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~- 274 (333)
.+-+.+.++..+.. + ....+ .+.++-.+.+.+-.++-+++||++.+..|-..
T Consensus 433 ~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 433 ANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred HHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 11223334433321 0 01112 34455668888888889999999987644221
Q ss_pred -----ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 -----VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 -----l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..... ..++.+|++||....... .+..+.+
T Consensus 513 ~~i~~~l~~~-~~~~tvIivtHr~~~l~~-~D~ii~l 547 (592)
T PRK10790 513 QAIQQALAAV-REHTTLVVIAHRLSTIVE-ADTILVL 547 (592)
T ss_pred HHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEE
Confidence 11111 125789999999877654 3444444
No 394
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.21 E-value=3.2e-06 Score=74.07 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=65.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE---eCCCCCHHHHHHHHHHHhC-CCCC------CCCCHH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV---VSQTPSITKIQDEIAGWLG-IKEL------PDNDEL 244 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~i~~~l~-~~~~------~~~~~~ 244 (333)
.++...++|+|++|+|||||++.+....... ...+++. +....... ++...+. .+.. ...+..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~~r~~v~~~~ 180 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVGIRTDVLDGC 180 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHH----HHHHHhcccccccccccccccccc
Confidence 4545689999999999999999999877532 1222221 11000112 2222211 1100 111111
Q ss_pred HHHHHHHHHHc-cCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHh
Q 046889 245 VRASLLCKRIE-KQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACN 297 (333)
Q Consensus 245 ~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~ 297 (333)
.....+...+. ..+-++++|++.....+..+.... ..|..+|+|||+..+..
T Consensus 181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-HAGVSIIATAHGRDVED 233 (270)
T ss_pred hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEechhHHHH
Confidence 12223444443 588999999998777666553332 35888999999877643
No 395
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.21 E-value=1.5e-05 Score=70.01 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=75.5
Q ss_pred ccccchHHHHHHHHHH---hh------------cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC
Q 046889 157 YNFKSRESTMKDIMEA---MK------------DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS 221 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~---l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 221 (333)
..++|.+.+++.+... +. .+....+.++||+|+||||+|+.+..............++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 3467776666555432 21 12345678999999999999999988753222111112232221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCc----------hhhhhccCCCCC-C-CcEEEE
Q 046889 222 ITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQ----------IELDRVGIPYGN-D-GCKFLL 288 (333)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~----------~~~~~l~~~~~~-~-g~~viv 288 (333)
.++... .++ ... ..+.+.+.. ...+|++||+... ..+..+...... . ...+|+
T Consensus 83 -~~l~~~---~~g------~~~----~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 83 -ADLVGE---YIG------HTA----QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred -HHhhhh---hcc------chH----HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 111110 011 011 112222221 2458999999742 122333211111 1 234455
Q ss_pred eeCChH----------HHhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889 289 TSRSRA----------ACNQMQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 289 TTr~~~----------v~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
++...+ +..++ ...+.+++++.++..+++++.+.
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHHHHHHHHHHHH
Confidence 543322 22222 22388999999999999987764
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.21 E-value=1e-05 Score=67.14 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHHcc
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCKRIEK 256 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~ 256 (333)
++.|+|+||.||||+++.+.-.... .+..+.++..-.. -.....++..++..+. ...........+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 3679999999999999999833211 1111111110000 0001111122222111 112233334445666655
Q ss_pred --CceEEEEeCCCCchhhh-------hccCCCCC-CCcEEEEeeCChHHHhhc
Q 046889 257 --QRVLVILDDLWVQIELD-------RVGIPYGN-DGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 257 --k~~LlVlDdv~~~~~~~-------~l~~~~~~-~g~~vivTTr~~~v~~~~ 299 (333)
++.|+++|++....+.. .+...... .++.+|++||+.++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 88999999997553311 11111222 378899999999876543
No 397
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.21 E-value=6.7e-06 Score=64.82 Aligned_cols=146 Identities=10% Similarity=0.201 Sum_probs=92.0
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--------cCCC------------------
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--------KMFD------------------ 209 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~------------------ 209 (333)
...|||....+-+|......++ .+.+.||+|.|||||.+.+.-...++ .+|+
T Consensus 8 in~~yg~~q~lfdi~l~~~~ge--tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 8 INCFYGAHQALFDITLDCPEGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred cccccccchheeeeeecCCCCC--EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 3457787777777776666677 88999999999999999775433221 2332
Q ss_pred -----eEEEEEeC--CC-------------CCHHHHHHHHHHHhCCCCCCC------CCHHHHHHHHHHHHccCceEEEE
Q 046889 210 -----EVAMAVVS--QT-------------PSITKIQDEIAGWLGIKELPD------NDELVRASLLCKRIEKQRVLVIL 263 (333)
Q Consensus 210 -----~~~wv~v~--~~-------------~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~k~~LlVl 263 (333)
...|-... ++ .....-...+++++.+.+..+ ....+....+.+.|.-++-++++
T Consensus 86 mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEee
Confidence 12232110 00 001122345666666543222 22345566788888889999999
Q ss_pred eCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 264 DDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 264 Ddv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
|++....+ .-++.-.+...|-.=+|+||.-+++....++.
T Consensus 166 deptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~v 211 (242)
T COG4161 166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred cCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhhe
Confidence 99876533 22333344556778889999999999888776
No 398
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.21 E-value=1.8e-05 Score=71.60 Aligned_cols=143 Identities=14% Similarity=0.208 Sum_probs=81.1
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+...+.+..++..++. ..+.++|+.|+||||+++.+++... .. ...+..+. ... ..++..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccH-HHHHHHH
Confidence 344556789999999999999887764 4666689999999999999987652 11 12222222 111 1111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHH--HccCceEEEEeCCCCc--hh----hhhccCCCCCCCcEEEEeeCChHH-Hhhccc
Q 046889 231 GWLGIKELPDNDELVRASLLCKR--IEKQRVLVILDDLWVQ--IE----LDRVGIPYGNDGCKFLLTSRSRAA-CNQMQA 301 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~g~~vivTTr~~~v-~~~~~~ 301 (333)
.. +... +...+.++|+||+... .+ +..+ +.....++.+|+||....- ...+..
T Consensus 89 ~~-----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~-le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 89 TR-----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSF-MEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HH-----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHH-HHhcCCCceEEEEcCChhhchHHHHh
Confidence 11 1111 1135668999998644 11 2221 1112346788888876532 111222
Q ss_pred c--eEecCCCCHHHHHHHHH
Q 046889 302 H--IVDVRTLTEEESWRSAE 319 (333)
Q Consensus 302 ~--~~~l~~L~~~e~~~lf~ 319 (333)
+ .+.++..+.++...++.
T Consensus 151 R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hceEEEeCCCCHHHHHHHHH
Confidence 2 26666667776655543
No 399
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.20 E-value=7.9e-06 Score=66.31 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRA 247 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (333)
++..|+||||+||||+++.+.-..-... .+....|...- +....+. ...+...
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------i~~~~~l-----S~G~~~~ 85 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----------IFTRLQL-----SGGEKEL 85 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----------ehheeec-----cccHHHH
Confidence 4899999999999999998753332111 11111111000 1111111 1113344
Q ss_pred HHHHHHHcc----CceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889 248 SLLCKRIEK----QRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRT 308 (333)
Q Consensus 248 ~~l~~~l~~----k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~ 308 (333)
..+...+.. ++.++++|++....+. ..........|+.+|++||+.+.... .+..+.+.+
T Consensus 86 ~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~-~d~~~~l~~ 155 (162)
T cd03227 86 SALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL-ADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh-hhhEEEEEE
Confidence 445555543 6789999999766432 22212211127889999999998764 344454443
No 400
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.20 E-value=4.8e-06 Score=83.34 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH-HHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ-AKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR 253 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 253 (333)
..++.|+||||.|||||++.+... ......+ ++....... ...+.++...++..+ ....+...-...+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~----~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGI----PIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCC----CccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 358999999999999999999876 2222221 111100000 000111111111100 0011111112223333
Q ss_pred Hc--cCceEEEEeCCCCchh------h-hhccCCCCCCCcEEEEeeCChHHHh
Q 046889 254 IE--KQRVLVILDDLWVQIE------L-DRVGIPYGNDGCKFLLTSRSRAACN 297 (333)
Q Consensus 254 l~--~k~~LlVlDdv~~~~~------~-~~l~~~~~~~g~~vivTTr~~~v~~ 297 (333)
+. .++.|++||++.+..+ + ..+...+...|+.+|+|||..++..
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 33 4789999999976533 1 1111122345889999999988743
No 401
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.6e-05 Score=76.03 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=87.9
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+.....-..... + ..+..-...+.+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID 83 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence 345567789999999999999987764 4679999999999999999987653211110 0 0000000011110
Q ss_pred HH-----hCCCCCCCCCHHHHHHHHHH----HHccCceEEEEeCCCCchh--hhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889 231 GW-----LGIKELPDNDELVRASLLCK----RIEKQRVLVILDDLWVQIE--LDRVG--IPYGNDGCKFLLTSRSRA-AC 296 (333)
Q Consensus 231 ~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~l~--~~~~~~g~~vivTTr~~~-v~ 296 (333)
.. +.+........+.+...+.. -..+++.++|+||+..... +..+. +......+.+|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000011112222111111 1224667999999875422 22221 111223567777776543 22
Q ss_pred hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889 297 NQMQAHI--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a 322 (333)
..+..+. +.+.+++.++....+.+.+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il 191 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVL 191 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHH
Confidence 2222222 7888999988887776554
No 402
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.3e-05 Score=73.97 Aligned_cols=162 Identities=10% Similarity=0.104 Sum_probs=87.6
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..++.|..++..++.. .+.+.|+.|+||||+|+.+.....-...... ..++.-...+.|.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~ 80 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALA 80 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhh
Confidence 3445667899999999999999887654 4789999999999999999876542111100 0000000111111
Q ss_pred HH-------hCCCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCC-h
Q 046889 231 GW-------LGIKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRS-R 293 (333)
Q Consensus 231 ~~-------l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~-~ 293 (333)
.. +..........++.. .+.+. ...+.-++|+|++... ...+.+. +......+.+|++|.+ .
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred cccCCCceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 00 000000111122211 11111 1246679999998644 2333331 2222335666655544 4
Q ss_pred HHHhhccc--ceEecCCCCHHHHHHHHHhh
Q 046889 294 AACNQMQA--HIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 294 ~v~~~~~~--~~~~l~~L~~~e~~~lf~~~ 321 (333)
.+...+.+ ..+.+.+++.++..+.+.+.
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence 44333333 33889999998887777654
No 403
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.5e-05 Score=74.39 Aligned_cols=169 Identities=12% Similarity=0.157 Sum_probs=89.1
Q ss_pred ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE-eCCCCCHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV-VSQTPSITKIQDEIA 230 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~ 230 (333)
|.....++|.+..++.|...+..++.. -+.++||.|+||||+|+.+.....-........|.. ....+..-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 445567899999999999988877653 488999999999999999987764322111011110 001111111111111
Q ss_pred HHhCC-----CCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCC-hHH
Q 046889 231 GWLGI-----KELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRS-RAA 295 (333)
Q Consensus 231 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~-~~v 295 (333)
..-.. ........+++.. +.+.+ .+.+-++|+||+.... ..+.+. +..+...+.+|++|.+ ..+
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 10000 0001111233322 22222 3456689999986542 233331 2222234555555543 334
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+.+.+++.++....+.+.+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHH
Confidence 3333333 38999999988877776543
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.18 E-value=2.7e-06 Score=72.65 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH--hhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAK--EKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLC 251 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~--~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 251 (333)
+..++.|+|++|.|||||++.+.-..- .-+.|-+.--..+ .....++..++..+. ...........+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~-------~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADI-------PIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEE-------eccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 345899999999999999998764311 1111111110111 122333344443321 1122333344455
Q ss_pred HHH--ccCceEEEEeCC---CCchhhhhcc----CCC-CCCCcEEEEeeCChHHHh
Q 046889 252 KRI--EKQRVLVILDDL---WVQIELDRVG----IPY-GNDGCKFLLTSRSRAACN 297 (333)
Q Consensus 252 ~~l--~~k~~LlVlDdv---~~~~~~~~l~----~~~-~~~g~~vivTTr~~~v~~ 297 (333)
..+ ..++-|++||++ .+..|-..+. ..+ ...|+.+|++||..++..
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~ 157 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTA 157 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHH
Confidence 555 467899999999 5554421110 111 124788999999876654
No 405
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=5.7e-05 Score=69.30 Aligned_cols=166 Identities=14% Similarity=0.066 Sum_probs=94.4
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeE------EEEEeCCCCCHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEV------AMAVVSQTPSITK 224 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~------~wv~v~~~~~~~~ 224 (333)
.|.....++|.+...+.|...+..++.. -+.++||.|+||+|||..+....--....... .-..+.... .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---P 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---h
Confidence 3444567899999999999999887654 58899999999999999887765321110000 000000000 1
Q ss_pred HHHHHHHHhCCCC---------C------CCCCHHHHHHHHHHHHc-----cCceEEEEeCCCCc--hhhhhcc--CCCC
Q 046889 225 IQDEIAGWLGIKE---------L------PDNDELVRASLLCKRIE-----KQRVLVILDDLWVQ--IELDRVG--IPYG 280 (333)
Q Consensus 225 ~~~~i~~~l~~~~---------~------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~--~~~~ 280 (333)
..+.+.. -..++ . .....++ +..+.+.+. +.+.++|+||+... ...+.+. +...
T Consensus 91 ~c~~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 91 VARRIAA-GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred HHHHHHc-cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1111110 00000 0 0111222 333444443 35679999998644 2233331 2223
Q ss_pred CCCcEEEEeeCChHHH-hhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 281 NDGCKFLLTSRSRAAC-NQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~-~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
..++.+|++|++.... ..+.++ .+.+.+++.++...++.+..
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 3467788888887542 222322 39999999999999998764
No 406
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.17 E-value=1.8e-06 Score=86.31 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-----
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI----- 222 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~----- 222 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+.+. ++. .....++|++..
T Consensus 466 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI 543 (686)
T TIGR03797 466 PLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSI 543 (686)
T ss_pred ccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccH
Confidence 356778877777888 9999999999999999999877654321 010 112334443311
Q ss_pred -----------HHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889 223 -----------TKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR 274 (333)
Q Consensus 223 -----------~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 274 (333)
.+-+...++..+.. + ....+ .+.++-.+.+.+-.++-+++||++.+..|-..
T Consensus 544 ~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 544 FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 11122333333321 0 01112 34456678888889999999999987644211
Q ss_pred ---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 ---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 ---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.-.....+..+|++||....... .++.+.|
T Consensus 624 e~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl 657 (686)
T TIGR03797 624 QAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVL 657 (686)
T ss_pred HHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEE
Confidence 100111114678999998887654 3444433
No 407
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.17 E-value=2.1e-05 Score=66.40 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=38.5
Q ss_pred HHHHHHHccCceEEEEeCCCCchh-------hhhccCCCCCC-CcEEEEeeCChHHHhhcccceEec
Q 046889 248 SLLCKRIEKQRVLVILDDLWVQIE-------LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 248 ~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.+.+..++-+++||++.+..+ +..+....... |..||++||+.+.... ++..+.+
T Consensus 130 lala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~-~d~i~~l 195 (204)
T cd03240 130 LALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA-ADHIYRV 195 (204)
T ss_pred HHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh-CCEEEEE
Confidence 356777888999999999986643 22332233333 6679999999987653 4444444
No 408
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.7e-05 Score=70.44 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=84.6
Q ss_pred ccccchHHHHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDEK----------VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQ 226 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 226 (333)
..++|.+..++.|...+..+. .+-+.++||.|+|||++|+.+.....-...- + ..+..-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence 457899999999999887653 4568899999999999999987664321100 0 000000001
Q ss_pred HHHHHHhCCC-------CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEee
Q 046889 227 DEIAGWLGIK-------ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTS 290 (333)
Q Consensus 227 ~~i~~~l~~~-------~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTT 290 (333)
+.+... ..+ .......++. ..+.+.+ .+++.++++|++... ...+.+. +..+..++.+|++|
T Consensus 77 ~~~~~~-~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 77 RTVLAG-THPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHhcC-CCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 111000 000 0001112222 1222222 235568999998754 2222221 22233466677777
Q ss_pred CChHH-Hhhcccc--eEecCCCCHHHHHHHHHhh
Q 046889 291 RSRAA-CNQMQAH--IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 291 r~~~v-~~~~~~~--~~~l~~L~~~e~~~lf~~~ 321 (333)
.+..- ...+.++ .+.+.+++.++....+.+.
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 77543 3233332 3899999999999888754
No 409
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.17 E-value=2.5e-05 Score=66.37 Aligned_cols=48 Identities=4% Similarity=0.016 Sum_probs=31.7
Q ss_pred CceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889 257 QRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV 304 (333)
Q Consensus 257 k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~ 304 (333)
.+-+++||++.+..+ +..+.......+..||++||+.+....++...+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~ 204 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLE 204 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEE
Confidence 456899999986643 222222223336789999999998877766553
No 410
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=6.7e-06 Score=70.90 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
..+.|+|+.|+|||.|++.+++.....+ ..++|++.. ++... ...+.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~------~~~~~------------------~~~~~~~~~~~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLA------ELLDR------------------GPELLDNLEQY- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHH------HHHhh------------------hHHHHHhhhhC-
Confidence 4688999999999999999988764322 234454422 22110 01233333332
Q ss_pred eEEEEeCCCCc---hhh----hhccCCCCCCCcEEEEeeCChHH---------Hhhcccce-EecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQ---IEL----DRVGIPYGNDGCKFLLTSRSRAA---------CNQMQAHI-VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~---~~~----~~l~~~~~~~g~~vivTTr~~~v---------~~~~~~~~-~~l~~L~~~e~~~lf~~~ 321 (333)
-+|++||+... ..| ..+.-.....|..+|+|++...- ..++.... +.++++++++..++++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 37889999632 222 22222223347778888875432 22233333 889999999999999976
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+.
T Consensus 179 a~ 180 (234)
T PRK05642 179 AS 180 (234)
T ss_pred HH
Confidence 54
No 411
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.16 E-value=2.7e-06 Score=83.20 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~------- 221 (333)
..++++...+.+|+ .++|+|++|+|||||++.+.+...+... ++. .....++|++.
T Consensus 354 ~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 354 PVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred cceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 46778887777888 9999999999999999999877543321 000 01122333321
Q ss_pred ----------HHHHHHHHHHHhCCCCC---------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 222 ----------ITKIQDEIAGWLGIKEL---------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 222 ----------~~~~~~~i~~~l~~~~~---------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
..+-+.+.++..+..+. ...+ .+.++-.+.+.+-.++-+++|||+.+..|-.
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11223334444443211 1112 3445567888888899999999998764421
Q ss_pred ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...... ..+..+|++||....... .++.+.+
T Consensus 512 ~~i~~~l~~~-~~~~tviiitHr~~~~~~-~d~i~~l 546 (574)
T PRK11160 512 RQILELLAEH-AQNKTVLMITHRLTGLEQ-FDRICVM 546 (574)
T ss_pred HHHHHHHHHH-cCCCEEEEEecChhHHHh-CCEEEEE
Confidence 111111 236778999998877654 4444444
No 412
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.16 E-value=1.2e-05 Score=62.74 Aligned_cols=88 Identities=20% Similarity=0.129 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC-
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ- 257 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 257 (333)
..+.|+|++|+||||+++.+........ ....++.............. ...... .............+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGG-KKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhc-cCCCCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999999988765322 12333333322211111100 011111 122223333344455555544
Q ss_pred ceEEEEeCCCCch
Q 046889 258 RVLVILDDLWVQI 270 (333)
Q Consensus 258 ~~LlVlDdv~~~~ 270 (333)
..++++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999998663
No 413
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.16 E-value=3.5e-06 Score=70.77 Aligned_cols=112 Identities=10% Similarity=0.130 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT-KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ 257 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 257 (333)
++|.|+||.|+||||+++.+...... .....++. +..+.... .-...+..+... ..+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 47999999999999999988776642 22223332 22211100 000011111000 111223455677888888
Q ss_pred ceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhh
Q 046889 258 RVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 258 ~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
+-++++|++.+.+.+..... ....|..++.|+|..+....
T Consensus 75 pd~ii~gEird~e~~~~~l~-~a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 75 PDVILVGEMRDLETIRLALT-AAETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHH-HHHcCCEEEEEecCCcHHHH
Confidence 89999999987765544322 22346779999998876543
No 414
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.15 E-value=2.3e-05 Score=68.80 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC----eEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 046889 164 STMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD----EVAMAVVSQTPSITKIQDEIAGWLGIK 236 (333)
Q Consensus 164 ~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv~v~~~~~~~~~~~~i~~~l~~~ 236 (333)
..++.|...+.. .+.+.+.|+|++|.|||++++.+.........-+ .++.+..+..++...+...|+..++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 455556655543 3456799999999999999999997765432211 456677888899999999999999996
Q ss_pred CCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCc
Q 046889 237 ELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQ 269 (333)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~ 269 (333)
-....+...........|.. +--+||+|++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 44555555555555566665 5569999999764
No 415
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.15 E-value=3e-05 Score=78.85 Aligned_cols=152 Identities=14% Similarity=0.233 Sum_probs=87.5
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
..+++||+++++.+...|......-+.++|++|+|||++++.+......... -...+|.. +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh----c
Confidence 4678999999999999997654446779999999999999999887643211 12344421 111111 0
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCch---------hhhhccCCCCCCC-cEEEEeeCChHHHh---
Q 046889 232 WLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQI---------ELDRVGIPYGNDG-CKFLLTSRSRAACN--- 297 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~---------~~~~l~~~~~~~g-~~vivTTr~~~v~~--- 297 (333)
+. .. ....++....+.+.+. .++.+|++|++.... +...+..|.-..| -++|-+|...+...
T Consensus 249 --g~-~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GT-KY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cC-CC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHh
Confidence 11 11 1223333333333333 467899999985321 2223333433333 45566665544311
Q ss_pred ---hccc--ceEecCCCCHHHHHHHHHh
Q 046889 298 ---QMQA--HIVDVRTLTEEESWRSAEG 320 (333)
Q Consensus 298 ---~~~~--~~~~l~~L~~~e~~~lf~~ 320 (333)
.+.. ..+.+...+.++...++..
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 1111 2277888888888887764
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.15 E-value=4.5e-06 Score=70.87 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH--HhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHH--
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA--KEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLC-- 251 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~-- 251 (333)
+++.|+|+||+|||||++.+.... ...+.|.......++ ...++...++..+. ...+...-...+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~ 102 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSKA 102 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHHH
Confidence 689999999999999999997432 111121111001110 11111112221100 0111111122222
Q ss_pred HHHccCceEEEEeCCCCchhh-------hhccCCCC---CCCcEEEEeeCChHHHhhc
Q 046889 252 KRIEKQRVLVILDDLWVQIEL-------DRVGIPYG---NDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 252 ~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~---~~g~~vivTTr~~~v~~~~ 299 (333)
..+..++.|++||++....+. ..+...+. ..+..+|++||+.+.+...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 233468899999999765331 11111111 1245799999999987654
No 417
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.15 E-value=2.4e-06 Score=83.80 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------- 220 (333)
...++.+...+..|+ .++|+|++|+|||||++.+.+...+... ++. .....++|++
T Consensus 348 ~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 425 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI 425 (585)
T ss_pred CccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccH
Confidence 345777777777777 9999999999999999999876543221 100 0112233332
Q ss_pred -----------CHHHHHH--------HHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 221 -----------SITKIQD--------EIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 221 -----------~~~~~~~--------~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+.+++.. +.+..+ +.. .....+ .+..+-.+.+.|-.++-+++|||+.+..|-.
T Consensus 426 ~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~ 505 (585)
T TIGR01192 426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505 (585)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 1111111 111111 111 011122 3445567888899999999999998764421
Q ss_pred ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...... ..+..||++||+.+.... +++.+.+
T Consensus 506 ~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~-~d~i~~l 542 (585)
T TIGR01192 506 TEARVKNAIDAL-RKNRTTFIIAHRLSTVRN-ADLVLFL 542 (585)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEEcChHHHHc-CCEEEEE
Confidence 211222 236779999999987754 4544444
No 418
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.13 E-value=8.2e-06 Score=81.96 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------- 220 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. .....++|++
T Consensus 487 ~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI 564 (708)
T TIGR01193 487 SNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564 (708)
T ss_pred CcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHH
Confidence 456777777777788 9999999999999999999876543221 000 0112333332
Q ss_pred ------------CHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 221 ------------SITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 221 ------------~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
+.+++ .+.++..+.. ...-...+.++-.+.+.+-.++-+++||++.+..|
T Consensus 565 ~eNi~l~~~~~~~~~~i-~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 565 LENLLLGAKENVSQDEI-WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHHhccCCCCCCHHHH-HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 11222 2223322211 11112234556678888889999999999987644
Q ss_pred hh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 LD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
-. ...... .+..+|++||....... .+..+.+
T Consensus 644 ~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~-~D~i~~l 681 (708)
T TIGR01193 644 TITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQ-SDKIIVL 681 (708)
T ss_pred HHHHHHHHHHHHHh--cCCEEEEEecchHHHHc-CCEEEEE
Confidence 21 111111 36778999999887654 4444444
No 419
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=9.4e-05 Score=67.97 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=85.9
Q ss_pred ccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------CCCeEEE
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------MFDEVAM 213 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~w 213 (333)
....++|.+..++.|..++..++. +.+.++||.|+||||+++.+........ +++. .+
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 445688999999999999987764 4678999999999999999987754211 1111 11
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEe
Q 046889 214 AVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLT 289 (333)
Q Consensus 214 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivT 289 (333)
+.-...... +..+.+.+.+.. .-+.+++-++|+|++... .....+. +......+.+|++
T Consensus 91 ~~~~~~~~~-~~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGV-DDIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCH-HHHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 111100111 111122221111 001235568999988543 2233331 1222235667777
Q ss_pred eCChH-HHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 290 SRSRA-ACNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 290 Tr~~~-v~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
|.+.. +...+... .+.+.++++++....+.+.+
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence 76654 22222222 38888999999888887654
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3.8e-06 Score=76.24 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHccCceEEEEeCCCCchhhhhccCCCC-CC--CcEEEEeeCChHHHhhcccceEecC
Q 046889 249 LLCKRIEKQRVLVILDDLWVQIELDRVGIPYG-ND--GCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~-~~--g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.+.|--.+.||.||++.+..+++..+.... -+ .-..+|++|+..+...+|+.+|+|.
T Consensus 422 SLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 422 SLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred hHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhh
Confidence 45566666777999999999988887633211 11 3468999999999999888887765
No 421
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.4e-05 Score=69.95 Aligned_cols=152 Identities=13% Similarity=0.241 Sum_probs=85.2
Q ss_pred ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhh------cCCCeEEEEEeCC--CCCHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEK------KMFDEVAMAVVSQ--TPSIT 223 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~f~~~~wv~v~~--~~~~~ 223 (333)
|.....++|.+...+.+...+..++. +.+.++||.|+||||+++.+....... ..|...+ +.+.. ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~- 90 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV- 90 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH-
Confidence 44456788999999999999987764 478899999999999999997765421 1111111 11111 1111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HHHhh
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AACNQ 298 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v~~~ 298 (333)
+..+.+++.+... -..+++-++++||+... ..+..+. +......+.+|++|... .+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1112222221110 01235668999988643 2233331 11122245556555432 22222
Q ss_pred ccc--ceEecCCCCHHHHHHHHHhhc
Q 046889 299 MQA--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 299 ~~~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
+.. ..++.+++++++....+.+.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHH
Confidence 222 238899999988888777654
No 422
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.12 E-value=3.6e-05 Score=67.02 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=35.1
Q ss_pred HHHHHHHHcc----CceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 247 ASLLCKRIEK----QRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 247 ~~~l~~~l~~----k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
...+...+.. .+-+++||++.+..+ +..+.......|..||++||+..+.. +++..
T Consensus 163 rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~-~~d~i 228 (247)
T cd03275 163 MAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS-KADAL 228 (247)
T ss_pred HHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh-hCCeE
Confidence 3345555543 467999999987644 22332333334778999999988764 34444
No 423
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.12 E-value=4.5e-06 Score=81.76 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------- 220 (333)
..++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. ....+++|++
T Consensus 346 ~il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 346 PALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred ccccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 35677777777788 9999999999999999999877654310 000 0112333332
Q ss_pred -----------CHHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889 221 -----------SITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE- 271 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 271 (333)
+..+ +.+.++.++.. .....+ .+.++-.+.+.+-.++-+++||++.+..|
T Consensus 424 ~Ni~~~~~~~~~~~~-i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~ 502 (571)
T TIGR02203 424 NNIAYGRTEQADRAE-IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN 502 (571)
T ss_pred HHHhcCCCCCCCHHH-HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 1111 22233332221 001122 34456678888888999999999987644
Q ss_pred -----hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 -----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 -----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+....... ..+..+|++||+...... ++..+.+
T Consensus 503 ~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~-~D~ii~l 540 (571)
T TIGR02203 503 ESERLVQAALERL-MQGRTTLVIAHRLSTIEK-ADRIVVM 540 (571)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEEehhhHHHHh-CCEEEEE
Confidence 22221221 236789999999987654 4544444
No 424
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.12 E-value=1.9e-05 Score=67.81 Aligned_cols=130 Identities=19% Similarity=0.261 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CeEEEE----------------EeCCCC------------------
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMF---DEVAMA----------------VVSQTP------------------ 220 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f---~~~~wv----------------~v~~~~------------------ 220 (333)
.++.+|+|++|+|||||.+.|.+-.+++..+ ....|+ +|.|+.
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~ 103 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK 103 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc
Confidence 4599999999999999999999887654321 111121 222221
Q ss_pred CHHHHHHHHHHHhCCC------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhc--cCCC-----CCCCcEEE
Q 046889 221 SITKIQDEIAGWLGIK------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRV--GIPY-----GNDGCKFL 287 (333)
Q Consensus 221 ~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l--~~~~-----~~~g~~vi 287 (333)
....-+..+...+|+. +..-...+.+.-.|.+.|-.++-||++|++-...|...- .+|+ ....--|+
T Consensus 104 ~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIl 183 (352)
T COG4148 104 SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPIL 183 (352)
T ss_pred cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEE
Confidence 1123455666677664 222233456677899999999999999998765442211 1221 12245689
Q ss_pred EeeCChHHHhhcccceEecC
Q 046889 288 LTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 288 vTTr~~~v~~~~~~~~~~l~ 307 (333)
-+||+.+...++..+.+-|+
T Consensus 184 YVSHS~~Ev~RLAd~vV~le 203 (352)
T COG4148 184 YVSHSLDEVLRLADRVVVLE 203 (352)
T ss_pred EEecCHHHHHhhhheEEEec
Confidence 99999988777777764443
No 425
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.8e-05 Score=73.94 Aligned_cols=162 Identities=12% Similarity=0.162 Sum_probs=86.0
Q ss_pred ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.....-..... ..++..-.....+..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-------ATPCGVCSACLEIDS 84 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhc
Confidence 444567899999999999999877654 568999999999999999987763211100 000000000111100
Q ss_pred H-----hCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889 232 W-----LGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-AC 296 (333)
Q Consensus 232 ~-----l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v~ 296 (333)
. +..........+... .+.... .+++.++|+|++.... ..+.+. +......+.+|++|.+.. +.
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred CCCCceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 0 000000011122221 122221 2456799999987542 233331 111223566666665543 22
Q ss_pred hhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 297 NQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 297 ~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
..+.++ .+++++++.++....+.+.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 222222 28889998888877666543
No 426
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.12 E-value=4.5e-05 Score=77.84 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=88.9
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
...+++||+.++..++..|.......+.++|++|+|||++++.+......... ....+|.. +...++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~---- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI---- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----
Confidence 45678999999999999887665556779999999999999999887643211 12233321 111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch---------hhhhccCCCCCCCc-EEEEeeCChHH---
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI---------ELDRVGIPYGNDGC-KFLLTSRSRAA--- 295 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~g~-~vivTTr~~~v--- 295 (333)
. +. . .....+.....+...+. .++.+|++|++.... +...+..|....|. .+|-+|...+.
T Consensus 242 a--~~-~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 242 A--GA-K-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKY 317 (852)
T ss_pred h--cc-h-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHH
Confidence 0 00 0 11122333333443333 368999999987432 12233344444444 45555554432
Q ss_pred -------HhhcccceEecCCCCHHHHHHHHHhh
Q 046889 296 -------CNQMQAHIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 296 -------~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (333)
..++ ..+.+...+.++...++...
T Consensus 318 ~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 318 IEKDAALERRF--QPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred hhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHH
Confidence 2222 22778888999999988765
No 427
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.11 E-value=8.5e-06 Score=79.03 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~------- 221 (333)
..++++...+.+|+ .++|+|++|+|||||++.+.+..++... ++. .....++|++.
T Consensus 336 ~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 336 PALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred ccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 46788887777888 9999999999999999999876554320 000 01223344321
Q ss_pred ----------HHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889 222 ----------ITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD- 273 (333)
Q Consensus 222 ----------~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~- 273 (333)
.++-+...++..+.. ...-...+.++-.+.+.+-.++-+++|||+.+..|-.
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 011222333333221 0111123445667888888899999999998764421
Q ss_pred -----hccCCCCCCCcEEEEeeCChHHHhh
Q 046889 274 -----RVGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 274 -----~l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
...... ..+..+|++||+......
T Consensus 494 ~~~i~~~l~~~-~~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 494 EALVTEALRAL-AQGRTVLLVTHRLALAER 522 (529)
T ss_pred HHHHHHHHHHh-cCCCEEEEEecCHHHHHh
Confidence 111221 246789999999887643
No 428
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.3e-06 Score=79.48 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------C------CCeEEEEEeCCCCC-----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------M------FDEVAMAVVSQTPS----- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~------f~~~~wv~v~~~~~----- 221 (333)
..+..+...+..++ .++|+|++|+|||||+..+.+...+.. . +....|+ +|.+-
T Consensus 335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v--~Q~p~lf~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV--SQNPYLFAGT 410 (559)
T ss_pred cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee--CCCCcccccc
Confidence 56777777777777 899999999999999999997765321 1 1234454 33321
Q ss_pred ------------HHHHHHHHHHHhCCCCC---------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 222 ------------ITKIQDEIAGWLGIKEL---------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 222 ------------~~~~~~~i~~~l~~~~~---------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
-++-+.+.+++.++.+. ...+ .+.++-.+.+.+-.++-++++|++....|.+
T Consensus 411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~e 490 (559)
T COG4988 411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490 (559)
T ss_pred HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHh
Confidence 02222333333332210 1112 2345567888888899999999998775533
Q ss_pred hc------cCCCCCCCcEEEEeeCChHHHhhcc
Q 046889 274 RV------GIPYGNDGCKFLLTSRSRAACNQMQ 300 (333)
Q Consensus 274 ~l------~~~~~~~g~~vivTTr~~~v~~~~~ 300 (333)
.- .... ..+..+|+.||....+..+.
T Consensus 491 tE~~i~~~l~~l-~~~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 491 TEQIILQALQEL-AKQKTVLVITHRLEDAADAD 522 (559)
T ss_pred HHHHHHHHHHHH-HhCCeEEEEEcChHHHhcCC
Confidence 32 1222 23577999999998876653
No 429
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.10 E-value=6.1e-05 Score=65.76 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHHHccC---ceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 245 VRASLLCKRIEKQ---RVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 245 ~~~~~l~~~l~~k---~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.....+...|..+ +-+++||++.+..+. ..+...+...|..||++||+.++.. .++..+.+.
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lg 245 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLG 245 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEec
Confidence 3455566666664 589999999876432 2222222334778999999999875 355556664
No 430
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.10 E-value=3.5e-06 Score=89.88 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---h-cC--CCe--------EEEEEeCCCC------CH-
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---K-KM--FDE--------VAMAVVSQTP------SI- 222 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~-~~--f~~--------~~wv~v~~~~------~~- 222 (333)
..++++...+.+++ +++|+|++|+|||||++.+.+.... . +. ++. ....++.|.. ++
T Consensus 777 ~iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 777 VILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred EeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 34555555555566 8999999999999999999887541 1 10 000 1112334321 11
Q ss_pred --------------------HHHHHHHHHHhCCCCCC---------CCC-HHHHHHHHHHHHccCc-eEEEEeCCCCchh
Q 046889 223 --------------------TKIQDEIAGWLGIKELP---------DND-ELVRASLLCKRIEKQR-VLVILDDLWVQIE 271 (333)
Q Consensus 223 --------------------~~~~~~i~~~l~~~~~~---------~~~-~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~ 271 (333)
.+...++++.+++.+.. ..+ .+..+-.|...|..++ .+|+||++.+..|
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 11234556666654211 122 2344556777777778 5999999987754
Q ss_pred h------hhccCCCCCCCcEEEEeeCChHH
Q 046889 272 L------DRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 272 ~------~~l~~~~~~~g~~vivTTr~~~v 295 (333)
- ..+.......|..||+|||+...
T Consensus 935 ~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 935 SQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 2 22212222347889999999864
No 431
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00081 Score=65.09 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=85.1
Q ss_pred cccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
..+.||-+++.++|++.|.- -.-++++++||+|+|||+|++.|..... ..|-.. ++..-.+..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--RkfvR~---sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKFVRI---SLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCEEEE---ecCccccHHHhc---
Confidence 34678999999999988841 1235999999999999999999998875 333222 222222222211
Q ss_pred HHHhCCCCCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCc------------------hh---hhhc--cCCCCCCCcE
Q 046889 230 AGWLGIKELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQ------------------IE---LDRV--GIPYGNDGCK 285 (333)
Q Consensus 230 ~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~------------------~~---~~~l--~~~~~~~g~~ 285 (333)
|.+...-.. +......+.+. +.++-+++||++... ++ +.+- ..|+.-....
T Consensus 394 ----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 394 ----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111111111 12223333332 457789999987521 00 1111 1222222333
Q ss_pred EEEeeCChH-HHhh-cccc-eEecCCCCHHHHHHHHHhhcc
Q 046889 286 FLLTSRSRA-ACNQ-MQAH-IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 286 vivTTr~~~-v~~~-~~~~-~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+|.|..+.+ +... +.-+ .|++.+-+++|=.+.-+++..
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 444444433 2111 2222 289999999988887776653
No 432
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=9.9e-05 Score=71.32 Aligned_cols=160 Identities=12% Similarity=0.164 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTP-------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~-------- 220 (333)
..++++...+.+|+ ++++|||+|.||||++..+.+-..+.. .+++ .....|+|.+
T Consensus 482 ~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred hhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 48999999999999 999999999999999999876654432 1111 1223455544
Q ss_pred ----------CHHHHHH--------HHHHHhCCC--------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889 221 ----------SITKIQD--------EIAGWLGIK--------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDR 274 (333)
Q Consensus 221 ----------~~~~~~~--------~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 274 (333)
+.+++.. +++..+... +..-..-+.++..|.+.|-.++.+||||+..+..|-+.
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 2222221 112222111 00111235567789999999999999999987754222
Q ss_pred ------ccCCCCCCCcEEEEeeCChHHHhhcccce--------EecC----CCCHH--HHHHHHHhhcccCCC
Q 046889 275 ------VGIPYGNDGCKFLLTSRSRAACNQMQAHI--------VDVR----TLTEE--ESWRSAEGKRRVCLE 327 (333)
Q Consensus 275 ------l~~~~~~~g~~vivTTr~~~v~~~~~~~~--------~~l~----~L~~~--e~~~lf~~~a~~~~~ 327 (333)
..-.... +-.||++.|--...+... .+ .++. .++.. -.++|.++..+....
T Consensus 640 E~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad-~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~~~ 710 (716)
T KOG0058|consen 640 EYLVQEALDRLMQ-GRTVLVIAHRLSTVRHAD-QIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSGEP 710 (716)
T ss_pred HHHHHHHHHHhhc-CCeEEEEehhhhHhhhcc-EEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccCCC
Confidence 1111122 345777777655433221 11 2221 12222 477777777765544
No 433
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.08 E-value=8.9e-06 Score=63.89 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=56.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCC-----------HHHHHHH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPS-----------ITKIQDE 228 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~-----------~~~~~~~ 228 (333)
.++ +++|+|++|+|||||++.+.+....... ++ .....++++... .......
T Consensus 10 ~g~--~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 10 PGE--IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp TTS--EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred CCC--EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455 8999999999999999999877653210 00 000112333311 1224556
Q ss_pred HHHHhCCCC-----C----CCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 229 IAGWLGIKE-----L----PDND-ELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 229 i~~~l~~~~-----~----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
+++.++... . ...+ .+...-.+...+..++-+++|||+.+
T Consensus 88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 666666432 1 1222 34556678888889999999999863
No 434
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.07 E-value=3.9e-06 Score=82.05 Aligned_cols=138 Identities=20% Similarity=0.330 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------- 220 (333)
..++.+...+..|+ .++|+|++|+|||||++.+.+...+... ++. .....++|.+
T Consensus 329 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 329 PALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred ccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 46777777777788 9999999999999999999876543221 000 0112233322
Q ss_pred ----------CHHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 221 ----------SITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 221 ----------~~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+... +...++..+.. .....+ .+..+-.+.+.+-.++-+++||++.+..|-.
T Consensus 407 ~Ni~~~~~~~~~~~-~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~ 485 (569)
T PRK10789 407 NNIALGRPDATQQE-IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485 (569)
T ss_pred HHHhcCCCCCCHHH-HHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 1111 22222222211 001112 3445567888899999999999998764421
Q ss_pred ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...... ..+..+|++||+...... .++.+.+
T Consensus 486 ~~~~i~~~l~~~-~~~~tii~itH~~~~~~~-~d~i~~l 522 (569)
T PRK10789 486 TEHQILHNLRQW-GEGRTVIISAHRLSALTE-ASEILVM 522 (569)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEecchhHHHc-CCEEEEE
Confidence 111111 236779999999877654 3444444
No 435
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.3e-05 Score=74.40 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=87.8
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|++..++.|...+..++. +.+.++||.|+||||+|+.+.....-.. |.... .+..-..++.+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 344556789999999999999877654 4688999999999999999987763211 11110 111111111111
Q ss_pred HHhCCC-----CCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HH
Q 046889 231 GWLGIK-----ELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AA 295 (333)
Q Consensus 231 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v 295 (333)
...... .......++.. .+... ...++-++|+|++... ..+..+. +..+...+.+|++|... .+
T Consensus 84 ~~~h~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred cCCCCceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 111000 00011122211 11111 1234558999998653 2333331 11122355566555443 33
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+.+.++++++....+.+.+
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 2223322 38999999999888777644
No 436
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.06 E-value=6.2e-05 Score=69.93 Aligned_cols=146 Identities=17% Similarity=0.239 Sum_probs=84.0
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 157 YNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
..+.|++..++.+...+.. ...+-|.++||+|+|||+||+.+++... .. |+.+.. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----H
Confidence 4577889888888776531 2345689999999999999999988754 12 232221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCch------------h----hhhcc---CCC-CCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQI------------E----LDRVG---IPY-GND 282 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~---~~~-~~~ 282 (333)
.+... ..+ ........+.+.. ...+.+|+|||+.... . +..+. -.+ ...
T Consensus 200 ~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELVQK---FIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHhHh---hcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11111 011 1111222222222 3467899999986421 1 11121 111 122
Q ss_pred CcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhcc
Q 046889 283 GCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 283 g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+..||.||...+.... .. ...+.+++.+.++..++|+.+..
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 5567878876554221 11 22388999999999999987754
No 437
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.05 E-value=7.2e-05 Score=76.16 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=42.2
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...+++||+.++..++..|.......+.++|++|+|||+|++.+.....
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999988766555678999999999999999988764
No 438
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=4.4e-05 Score=71.88 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
.-+.|+|+.|+|||+|++.+.+..... . ...+++. ...+...+...+... . ...+...+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-~-~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~-~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES-G-GKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFY-RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHc-ccC
Confidence 457899999999999999999887532 1 2233332 233444444444321 1 12233333 345
Q ss_pred eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCCh-H--------HHhhcccce-EecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSR-A--------ACNQMQAHI-VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~-~--------v~~~~~~~~-~~l~~L~~~e~~~lf~~~ 321 (333)
.+|++||+.... .+..+.-.....|..||+||... . +..++.... +.+.+++.++...++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 689999985431 11222111122366788888653 1 122333333 889999999999999887
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+-
T Consensus 284 ~~ 285 (445)
T PRK12422 284 AE 285 (445)
T ss_pred HH
Confidence 63
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.05 E-value=3.8e-05 Score=61.83 Aligned_cols=112 Identities=19% Similarity=0.152 Sum_probs=59.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH--HHHhCCC-------CC-CCCCHHHHH-H
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI--AGWLGIK-------EL-PDNDELVRA-S 248 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i--~~~l~~~-------~~-~~~~~~~~~-~ 248 (333)
++.|+|++|+||||++..+...... .-..+.|+........ ..... ....... .. ......... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIEE--LTERLIGESLKGALDNLIIVFATADDPAAARLLSK 76 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchHH--HHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHH
Confidence 3689999999999999999887753 2345556665544332 11110 1110000 11 111122211 1
Q ss_pred HHHHHHccCceEEEEeCCCCc----------------hhhhhccCCCCCCCcEEEEeeCChHH
Q 046889 249 LLCKRIEKQRVLVILDDLWVQ----------------IELDRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~g~~vivTTr~~~v 295 (333)
........+.-++|+|++... ..+..+..-....+..+|+|+|....
T Consensus 77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 223334456779999998632 11222222223348889999997654
No 440
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.05 E-value=5.9e-05 Score=66.96 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV 259 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 259 (333)
-+.++|++|+||||+|+.+.......+......++.++. .++... .++. +.......+.+ ....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~---~~g~------~~~~~~~~~~~---a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQ---YIGH------TAPKTKEILKR---AMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHh---hccc------chHHHHHHHHH---ccCc
Confidence 588999999999999998887664333222223444442 122111 1121 11111111222 1346
Q ss_pred EEEEeCCCCc-----------hhhhhcc--CCCCCCCcEEEEeeCChHHHhh--cc-------cceEecCCCCHHHHHHH
Q 046889 260 LVILDDLWVQ-----------IELDRVG--IPYGNDGCKFLLTSRSRAACNQ--MQ-------AHIVDVRTLTEEESWRS 317 (333)
Q Consensus 260 LlVlDdv~~~-----------~~~~~l~--~~~~~~g~~vivTTr~~~v~~~--~~-------~~~~~l~~L~~~e~~~l 317 (333)
+|+|||+... .....+. +.....+.+||+++.....-.. .. ...+.+++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 9999998632 1112221 1112235566777654322111 11 23489999999999999
Q ss_pred HHhhc
Q 046889 318 AEGKR 322 (333)
Q Consensus 318 f~~~a 322 (333)
+.+.+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88775
No 441
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.04 E-value=3.1e-06 Score=84.79 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------- 220 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------- 220 (333)
...++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. .....++|++
T Consensus 478 ~~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI 555 (694)
T TIGR03375 478 TPALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTL 555 (694)
T ss_pred ccceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhH
Confidence 346777887777888 9999999999999999999876544221 000 0122344432
Q ss_pred -----------CHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -----------SITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.+++ .+.++..+.. ...-...+.++-.+.+.+-.++-+++||++.+..|-
T Consensus 556 ~eNi~~~~~~~~~~~i-~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 556 RDNIALGAPYADDEEI-LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred HHHHhCCCCCCCHHHH-HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 11222 2222222211 011112344566788888889999999999877442
Q ss_pred h------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
. ...... ..++.+|++||....... +++.+.|
T Consensus 635 ~te~~i~~~l~~~-~~~~T~iiItHrl~~~~~-~D~iivl 672 (694)
T TIGR03375 635 RSEERFKDRLKRW-LAGKTLVLVTHRTSLLDL-VDRIIVM 672 (694)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEEecCHHHHHh-CCEEEEE
Confidence 2 111111 236789999999987654 3444444
No 442
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.5e-05 Score=71.95 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=84.4
Q ss_pred ccchH-HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC------eEEEEEeC---
Q 046889 159 FKSRE-STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD------EVAMAVVS--- 217 (333)
Q Consensus 159 ~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~------~~~wv~v~--- 217 (333)
+-|.+ ..++++...+.+|+ -|+|+|++|+|||||++.+.+...+++ +.+ ...|+.-+
T Consensus 346 y~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred cCCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 44544 68889998888888 899999999999999999997554332 111 11121111
Q ss_pred -------------CCCCHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCC
Q 046889 218 -------------QTPSITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLW 267 (333)
Q Consensus 218 -------------~~~~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (333)
++.+ .+-+..++++.++. +..-+..+..+-.+.+.|-...-+++||++.
T Consensus 424 F~~Tlr~NL~lA~~~As-DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT 502 (573)
T COG4987 424 FSGTLRDNLRLANPDAS-DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPT 502 (573)
T ss_pred HHHHHHHHHhhcCCCCC-HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCc
Confidence 0111 12233445554432 1111223445566777777788899999987
Q ss_pred Cch------hhhhccCCCCCCCcEEEEeeCChHHHhhccc
Q 046889 268 VQI------ELDRVGIPYGNDGCKFLLTSRSRAACNQMQA 301 (333)
Q Consensus 268 ~~~------~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~ 301 (333)
... ++-.+.+.. -.|..+|++||...-.+.|..
T Consensus 503 egLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le~~dr 541 (573)
T COG4987 503 EGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLERMDR 541 (573)
T ss_pred ccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHhhcCE
Confidence 553 333332322 226679999998877666544
No 443
>PRK06620 hypothetical protein; Validated
Probab=98.03 E-value=1.6e-05 Score=67.55 Aligned_cols=107 Identities=15% Similarity=0.021 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
..+.|+||.|+|||+|++.+.+... . .++ +.... . . +.+ ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~--~~~~~-------------~--------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YII--KDIFF-------------N--------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEc--chhhh-------------c--------h-------hHH-hcC
Confidence 4689999999999999998766542 1 111 10000 0 0 011 233
Q ss_pred eEEEEeCCCCch--hhhhccCCCCCCCcEEEEeeCChHH-------Hhhcccc-eEecCCCCHHHHHHHHHhhcc
Q 046889 259 VLVILDDLWVQI--ELDRVGIPYGNDGCKFLLTSRSRAA-------CNQMQAH-IVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 259 ~LlVlDdv~~~~--~~~~l~~~~~~~g~~vivTTr~~~v-------~~~~~~~-~~~l~~L~~~e~~~lf~~~a~ 323 (333)
.+|++||+.... .+..+.-.....|..+|+|++.... ..++... .+.++++++++-..++++.+-
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 578999996432 2222212223457788888875432 3334444 389999999998888877653
No 444
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8e-05 Score=72.13 Aligned_cols=163 Identities=11% Similarity=0.094 Sum_probs=89.1
Q ss_pred cccccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.|.....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+.....-...... ..++.-...+.|.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 34445678899999999999888766 467889999999999999999877642110000 0011111111111
Q ss_pred HHhCCC-----CCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HH
Q 046889 231 GWLGIK-----ELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AA 295 (333)
Q Consensus 231 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v 295 (333)
.....+ .......+.. ..+.+. ..+++.++|+|++... ..++.+. +......+.+|++|.+. .+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 110000 0001112211 112222 2346679999998654 2233331 11122355666666553 34
Q ss_pred Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 296 CNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
...+..+ .+++.+++.++....+.+.+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHH
Confidence 3333322 38999999999988887644
No 445
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=8.3e-05 Score=72.38 Aligned_cols=166 Identities=10% Similarity=0.120 Sum_probs=90.7
Q ss_pred cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCC--eEEEEEeCCCCCHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFD--EVAMAVVSQTPSITKIQDE 228 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~ 228 (333)
.|.....++|.+..++.|...+..++.. -+.++|+.|+||||+|+.+.....-..... ...+ ..+..-...+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 3445667899999999999999887644 688999999999999999987754211100 0000 00010111122
Q ss_pred HHHHhCCC-----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-
Q 046889 229 IAGWLGIK-----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR- 293 (333)
Q Consensus 229 i~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~- 293 (333)
|......+ .......++.. .+.+.+ ..++-++|+|++... ...+.+. +.....++.+|++|...
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 22111110 00111222222 222222 235668999998644 2233331 22223366676666443
Q ss_pred HHHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 294 AACNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 294 ~v~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
.+...+.++ .+.+.++++++....+.+.+
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 333233333 38899999988888777654
No 446
>PLN03140 ABC transporter G family member; Provisional
Probab=98.03 E-value=5.3e-06 Score=88.50 Aligned_cols=156 Identities=12% Similarity=0.158 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hcC--CC---------eEEEEEeCCCC------CHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KKM--FD---------EVAMAVVSQTP------SIT 223 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~--f~---------~~~wv~v~~~~------~~~ 223 (333)
..++++...+.+|+ +++|+|++|+|||||++.+.+.... .+. +. .....++.|.. ++.
T Consensus 894 ~iL~~vs~~i~~Ge--l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 894 QLLREVTGAFRPGV--LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred eEeeCcEEEEECCe--EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 45555555555666 9999999999999999999876431 110 00 01112233321 110
Q ss_pred ---------------------HHHHHHHHHhCCCCC----------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 224 ---------------------KIQDEIAGWLGIKEL----------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 224 ---------------------~~~~~i~~~l~~~~~----------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
....++++.+++... ...+ .+..+-.|...|..++-+|+||++.+..|
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 113345666665411 1122 33445668888888999999999987754
Q ss_pred hh------hccCCCCCCCcEEEEeeCChHH-HhhcccceEec---------CCCC--HHHHHHHHHhh
Q 046889 272 LD------RVGIPYGNDGCKFLLTSRSRAA-CNQMQAHIVDV---------RTLT--EEESWRSAEGK 321 (333)
Q Consensus 272 ~~------~l~~~~~~~g~~vivTTr~~~v-~~~~~~~~~~l---------~~L~--~~e~~~lf~~~ 321 (333)
-. .+.......|..||+|||+... .....++.+.| .+.. ..+..++|.+.
T Consensus 1052 ~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~ 1119 (1470)
T PLN03140 1052 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAI 1119 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhc
Confidence 21 2212223347789999999863 22333333323 2222 35788888875
No 447
>CHL00181 cbbX CbbX; Provisional
Probab=98.03 E-value=0.00017 Score=64.02 Aligned_cols=126 Identities=15% Similarity=0.195 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV 259 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 259 (333)
.+.++|++|+||||+|+.++......+.-....|+.++. .++... ..+. ........+.+ ...-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~---~~g~------~~~~~~~~l~~---a~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQ---YIGH------TAPKTKEVLKK---AMGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHH---Hhcc------chHHHHHHHHH---ccCC
Confidence 478899999999999999988754322222222444442 222211 1121 11111111222 1335
Q ss_pred EEEEeCCCCc-----------hhhhhcc--CCCCCCCcEEEEeeCChHH----------HhhcccceEecCCCCHHHHHH
Q 046889 260 LVILDDLWVQ-----------IELDRVG--IPYGNDGCKFLLTSRSRAA----------CNQMQAHIVDVRTLTEEESWR 316 (333)
Q Consensus 260 LlVlDdv~~~-----------~~~~~l~--~~~~~~g~~vivTTr~~~v----------~~~~~~~~~~l~~L~~~e~~~ 316 (333)
+|++|++... .....+. +.....+..||+++....+ ..++ ...+.+++++.+|..+
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEELLQ 203 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHHHHH
Confidence 9999998642 1112221 1112235667777764332 2222 2348899999999999
Q ss_pred HHHhhc
Q 046889 317 SAEGKR 322 (333)
Q Consensus 317 lf~~~a 322 (333)
++.+.+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 888775
No 448
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.03 E-value=6.9e-06 Score=80.55 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~------- 221 (333)
..++++...+.+|+ .++|+|++|+|||||++.+.+...+... ++. ....+++|++.
T Consensus 354 ~iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~ 431 (576)
T TIGR02204 354 PALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM 431 (576)
T ss_pred ccccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence 46777777777788 9999999999999999999987654321 110 01223333321
Q ss_pred ----------HHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889 222 ----------ITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD- 273 (333)
Q Consensus 222 ----------~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~- 273 (333)
..+-+...++..+. . .....+ .+.++-.+.+.+-.++-+++|||+.+..|-.
T Consensus 432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 01112222232221 1 001122 3445567888888889999999998764321
Q ss_pred -----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 -----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 -----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...... ..+..+|++||+...... .++.+.+
T Consensus 512 ~~~i~~~l~~~-~~~~t~IiitH~~~~~~~-~d~vi~l 547 (576)
T TIGR02204 512 EQLVQQALETL-MKGRTTLIIAHRLATVLK-ADRIVVM 547 (576)
T ss_pred HHHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEE
Confidence 111111 236789999999887654 3444444
No 449
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.02 E-value=0.00019 Score=59.71 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------CCCeEEEEEeC-CCCCHHHH
Q 046889 168 DIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------MFDEVAMAVVS-QTPSITKI 225 (333)
Q Consensus 168 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~-~~~~~~~~ 225 (333)
.|...+..++. +.+.+.|+.|+||||+++.+........ +.+. .++... ..... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34555556654 5799999999999999999987754221 1111 111110 01111 11
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-HHhhcc
Q 046889 226 QDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQ 300 (333)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~ 300 (333)
++++.+.+... -..+.+-++|+||+.... ..+.+. +......+.+|++|++.. +...+.
T Consensus 81 i~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 11122221110 012456789999986542 222221 122233566777776542 222222
Q ss_pred cc--eEecCCCCHHHHHHHHHhh
Q 046889 301 AH--IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 301 ~~--~~~l~~L~~~e~~~lf~~~ 321 (333)
.+ .+.+.+++.++....+.+.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc
Confidence 22 3899999999988888776
No 450
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.02 E-value=4.7e-06 Score=75.01 Aligned_cols=156 Identities=13% Similarity=0.181 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--------cCCCeEEEEE----------------eC
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--------KMFDEVAMAV----------------VS 217 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~~~~wv~----------------v~ 217 (333)
..+.++.+...+..|+ ++++||.+|+|||.-|..+..-.... -+|+..-... +.
T Consensus 22 ~~~aVk~isf~i~~GE--tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIF 99 (534)
T COG4172 22 TVEAVKGISFDIEAGE--TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIF 99 (534)
T ss_pred ceEeeccceeeecCCC--EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEe
Confidence 4456777888888888 99999999999999999988765421 1222211111 11
Q ss_pred CCC----C-HHHH----------------------HHHHHHHhCCCCC---------CCCCHHHHHHHHHHHHccCceEE
Q 046889 218 QTP----S-ITKI----------------------QDEIAGWLGIKEL---------PDNDELVRASLLCKRIEKQRVLV 261 (333)
Q Consensus 218 ~~~----~-~~~~----------------------~~~i~~~l~~~~~---------~~~~~~~~~~~l~~~l~~k~~Ll 261 (333)
|.+ + ...+ .-++++..++++. .-...+....+|.-.|.+++-||
T Consensus 100 QEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lL 179 (534)
T COG4172 100 QEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLL 179 (534)
T ss_pred cccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeE
Confidence 111 1 1111 1233444454311 11223445678999999999999
Q ss_pred EEeCCCCchhh------hhccCCC-CCCCcEEEEeeCChHHHhhcccceEecC---CCCHHHHHHHHH
Q 046889 262 ILDDLWVQIEL------DRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR---TLTEEESWRSAE 319 (333)
Q Consensus 262 VlDdv~~~~~~------~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~---~L~~~e~~~lf~ 319 (333)
|-|++.+..|. ..+.-.+ ...|-.++++||+..+...+++.++.|. ......+..+|.
T Consensus 180 IADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 180 IADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred eecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 99999877541 2221111 2338889999999999998888885443 344555666665
No 451
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00012 Score=66.80 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=94.1
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCeEEEEEeCCCCCHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDEVAMAVVSQTPSITKIQDE 228 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~ 228 (333)
.|.....++|.+.....|...+..++. +.+.|.|+.|+||||||+.+....-.... +... .....+......+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 344556789999999999999988764 45889999999999999998877642110 1111 00001111112222
Q ss_pred HHHH-------hCCC--CC-----CCCCHHHHHHHHHHHHc-----cCceEEEEeCCCCch--hhhhcc--CCCCCCCcE
Q 046889 229 IAGW-------LGIK--EL-----PDNDELVRASLLCKRIE-----KQRVLVILDDLWVQI--ELDRVG--IPYGNDGCK 285 (333)
Q Consensus 229 i~~~-------l~~~--~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~ 285 (333)
+... +..+ .. .....++ +..+.+.+. +++.++|+|++.... ..+.+. +..+..++.
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 2211 1000 00 0112233 334454444 366799999987542 222221 112233566
Q ss_pred EEEeeCChH-HHhhcccc--eEecCCCCHHHHHHHHHhh
Q 046889 286 FLLTSRSRA-ACNQMQAH--IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 286 vivTTr~~~-v~~~~~~~--~~~l~~L~~~e~~~lf~~~ 321 (333)
+|++|++.. +...+.++ .+.+.+++.++...++.+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 677776654 22222222 3999999999999999874
No 452
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.01 E-value=5e-06 Score=84.94 Aligned_cols=142 Identities=16% Similarity=0.235 Sum_probs=84.2
Q ss_pred cccccchHH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-------------------E
Q 046889 156 FYNFKSRES-TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-------------------V 215 (333)
Q Consensus 156 ~~~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------------------~ 215 (333)
....+|... .++.+...+.+++ +.++.|+||+||||..+.+.++..+.. ..+|+ +
T Consensus 570 L~k~y~~~~~Av~~ls~~V~~ge--cfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~~~~~~~iGy 644 (885)
T KOG0059|consen 570 LSKVYGGKDGAVRGLSFAVPPGE--CFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDFQQVRKQLGY 644 (885)
T ss_pred eeeeecchhhhhcceEEEecCCc--eEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccchhhhhhhccc
Confidence 344455444 6666666666777 899999999999999999998876543 22333 1
Q ss_pred eCCCC------------------------CHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeC
Q 046889 216 VSQTP------------------------SITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 216 v~~~~------------------------~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
++|.. +........++.+++.+..... .....-.+.-.+-+.+-++.||+
T Consensus 645 CPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE 724 (885)
T KOG0059|consen 645 CPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE 724 (885)
T ss_pred CCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC
Confidence 12211 1122233334444443221111 11122234444456788999999
Q ss_pred CCCchh-------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 266 LWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 266 v~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
+.+..| |..+.. ...+|..||+|||+.+.|+.++++.
T Consensus 725 PstGmDP~arr~lW~ii~~-~~k~g~aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 725 PSTGLDPKARRHLWDIIAR-LRKNGKAIILTSHSMEEAEALCTRT 768 (885)
T ss_pred CCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHHHHhhhh
Confidence 876533 555522 2333437999999999999888766
No 453
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.01 E-value=5.8e-06 Score=82.79 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------- 220 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------- 220 (333)
..++++...+..|+ .++|+|++|+|||||++.+.+...+.+. ++. .....++|++
T Consensus 471 ~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 471 EVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred cccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 46777777777788 9999999999999999999877544321 000 0011233332
Q ss_pred ----------CHHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889 221 ----------SITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD 273 (333)
Q Consensus 221 ----------~~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (333)
+.+++ .+.++..+. + .....+ .+.++-.+.+.+-.++-+++||++.+..|-.
T Consensus 549 eNi~~~~~~~~~~~i-~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 549 DNIALCNPGAPFEHV-IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627 (694)
T ss_pred HHHhcCCCCCCHHHH-HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 11222 122222211 1 011122 3445667888888999999999998764421
Q ss_pred ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...... ..+..+|++||+...... .++.+.+
T Consensus 628 ~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~ii~l 664 (694)
T TIGR01846 628 SEALIMRNMREI-CRGRTVIIIAHRLSTVRA-CDRIIVL 664 (694)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEeCChHHHHh-CCEEEEE
Confidence 111111 236789999999988654 4444433
No 454
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.00 E-value=4.5e-05 Score=71.40 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
..+.|+|+.|+|||+|++.+++.......-...+++. ..++...+...+... .. ..+.+.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KM----EEFKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CH----HHHHHHHHh-C
Confidence 3688999999999999999998876432112233442 234444455444321 12 223333332 4
Q ss_pred eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCChH-H--------Hhhcccc-eEecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSRA-A--------CNQMQAH-IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~~-v--------~~~~~~~-~~~l~~L~~~e~~~lf~~~ 321 (333)
-+|+|||+.... .+..+.-.....|..+|+|+.... . ..++... .+.+++.+.++-..+++++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 589999996431 122211111223566777776432 1 2233332 3888999999999999887
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+-
T Consensus 281 ~~ 282 (405)
T TIGR00362 281 AE 282 (405)
T ss_pred HH
Confidence 64
No 455
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.00 E-value=4.2e-05 Score=71.09 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 241 (333)
+......+...+..... ++.|.||-++|||||++.+....... .+++..-+......-+.+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d------------- 82 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLD------------- 82 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHH-------------
Confidence 44555666666554443 99999999999999996666544321 333332221110100011
Q ss_pred CHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCc-EEEEeeCChHH-----Hhhcccce--EecCCCCHHH
Q 046889 242 DELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGC-KFLLTSRSRAA-----CNQMQAHI--VDVRTLTEEE 313 (333)
Q Consensus 242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~-~vivTTr~~~v-----~~~~~~~~--~~l~~L~~~e 313 (333)
....+...-..++.+++||+|.+..+|....-.+.+.|- +|++|+-+... +.....+. +.+-||+-.|
T Consensus 83 ----~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 83 ----LLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred ----HHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 111111111227789999999999988877433333332 68888877655 34444444 8999999988
Q ss_pred HHH
Q 046889 314 SWR 316 (333)
Q Consensus 314 ~~~ 316 (333)
...
T Consensus 159 fl~ 161 (398)
T COG1373 159 FLK 161 (398)
T ss_pred HHh
Confidence 865
No 456
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.99 E-value=2.5e-05 Score=66.49 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE---EEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM---AVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCK 252 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w---v~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 252 (333)
.++.|+||||.||||+++.+....-.. +-.+.++ ..++. ..++...++..+. .......-...+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~-~~g~~vp~~~~~i~~-------~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~ 102 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLA-QIGSFVPASKAEIGV-------VDRIFTRIGASDDLAGGRSTFMVEMVETAN 102 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHh-ccCCeeccccceecc-------eeeEeccCCchhhhccCcchHHHHHHHHHH
Confidence 589999999999999999986432110 1011111 00000 0011111111110 11111111223444
Q ss_pred HHc--cCceEEEEeCC---CCchhhhh----ccCCCCCC-CcEEEEeeCChHHHh
Q 046889 253 RIE--KQRVLVILDDL---WVQIELDR----VGIPYGND-GCKFLLTSRSRAACN 297 (333)
Q Consensus 253 ~l~--~k~~LlVlDdv---~~~~~~~~----l~~~~~~~-g~~vivTTr~~~v~~ 297 (333)
.+. .++-|++||++ .+..+-.. +...+... ++.+|+|||+.++..
T Consensus 103 ~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 103 ILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE 157 (216)
T ss_pred HHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence 443 58899999999 55443211 11111233 788999999987644
No 457
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=7.9e-05 Score=71.91 Aligned_cols=128 Identities=18% Similarity=0.159 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV 259 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 259 (333)
.+.|+|+.|+|||.|++.+++.......-..+.++. ..+++..+...+.. .. ...+.+.+.+ .-
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~----~~~f~~~y~~-~D 379 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GK----GDSFRRRYRE-MD 379 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh-----cc----HHHHHHHhhc-CC
Confidence 589999999999999999998875321112233432 23444444443321 01 1223333433 46
Q ss_pred EEEEeCCCCc-------hhhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHhhc
Q 046889 260 LVILDDLWVQ-------IELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 260 LlVlDdv~~~-------~~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~~a 322 (333)
+|+|||+... ..+..+.......|..|||||+... +..++.... +.|++.+.+.-..++++++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 8999999643 1222332222334666888887632 233344444 8999999999999999886
Q ss_pred c
Q 046889 323 R 323 (333)
Q Consensus 323 ~ 323 (333)
-
T Consensus 460 ~ 460 (617)
T PRK14086 460 V 460 (617)
T ss_pred H
Confidence 4
No 458
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.98 E-value=7.4e-05 Score=64.15 Aligned_cols=127 Identities=10% Similarity=0.097 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 046889 163 ESTMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241 (333)
Q Consensus 163 ~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 241 (333)
...+..+..+... .....+.|+|+.|+|||+||+.+++..... .. ...++...+. ... +
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~------~~~----~-------- 85 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASP------LLA----F-------- 85 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHh------HHH----H--------
Confidence 3444455554431 233478999999999999999999876432 21 2233332221 000 0
Q ss_pred CHHHHHHHHHHHHccCceEEEEeCCCCchh-----hhhccCCCCCCCc-EEEEeeCChHHHh--------hccc-ceEec
Q 046889 242 DELVRASLLCKRIEKQRVLVILDDLWVQIE-----LDRVGIPYGNDGC-KFLLTSRSRAACN--------QMQA-HIVDV 306 (333)
Q Consensus 242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~-~vivTTr~~~v~~--------~~~~-~~~~l 306 (333)
.. ..+..+|++||+..... +..+.......+. .+|+|++...... .+.. ..+.+
T Consensus 86 ----------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l 154 (227)
T PRK08903 86 ----------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL 154 (227)
T ss_pred ----------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence 01 12345899999964321 2122111122344 3666665433211 3322 34899
Q ss_pred CCCCHHHHHHHHHh
Q 046889 307 RTLTEEESWRSAEG 320 (333)
Q Consensus 307 ~~L~~~e~~~lf~~ 320 (333)
.++++++-..++.+
T Consensus 155 ~pl~~~~~~~~l~~ 168 (227)
T PRK08903 155 KPLSDADKIAALKA 168 (227)
T ss_pred cCCCHHHHHHHHHH
Confidence 99999887777665
No 459
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.97 E-value=4e-05 Score=62.09 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=34.1
Q ss_pred HHHHHHccCceEEEEeCCCCchh----hhhc--cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 249 LLCKRIEKQRVLVILDDLWVQIE----LDRV--GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~----~~~l--~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
-+.+.+. ..=+.+||++..... +.-+ .......|+.|||.||++-+...-+...+.+
T Consensus 139 i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~ 201 (233)
T COG3910 139 IFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEI 201 (233)
T ss_pred HHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEE
Confidence 3444443 334778999987632 2222 2233455899999999998755444444433
No 460
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.97 E-value=3.5e-05 Score=65.91 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV 215 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 215 (333)
.++|+|+.|+|||||+..+..... ..|..+.+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEe
Confidence 578999999999999999987754 5676666554
No 461
>PTZ00243 ABC transporter; Provisional
Probab=97.97 E-value=1.4e-05 Score=86.14 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CC-eEEEEEeCCCCCH----------------HHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FD-EVAMAVVSQTPSI----------------TKIQ 226 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~~~----------------~~~~ 226 (333)
.++++...+..|+ +++|+|++|+|||||++.+.+...+... .. .....+++|.+.. ..-.
T Consensus 675 iL~~isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 675 LLRDVSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred eEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 3444555555566 8999999999999999999987643221 00 0112234444211 0001
Q ss_pred HH---------HHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-------hccCCCCCC
Q 046889 227 DE---------IAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-------RVGIPYGND 282 (333)
Q Consensus 227 ~~---------i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-------~l~~~~~~~ 282 (333)
.. .++.+ |.. .....+ .+..+..|.+.+-.++-+++|||+.+..|.. .+... ...
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~ 831 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALA 831 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhC
Confidence 11 12222 111 111122 3455667888999999999999998875522 11111 123
Q ss_pred CcEEEEeeCChHHHhhcccceEec
Q 046889 283 GCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
|..+|++||+...... ++..+.|
T Consensus 832 ~~TvIlvTH~~~~~~~-ad~ii~l 854 (1560)
T PTZ00243 832 GKTRVLATHQVHVVPR-ADYVVAL 854 (1560)
T ss_pred CCEEEEEeCCHHHHHh-CCEEEEE
Confidence 7789999999988754 4444443
No 462
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00046 Score=65.45 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+++|+|++|+||||++..+.....
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3999999999999999998877654
No 463
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.96 E-value=7e-05 Score=71.06 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR 258 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 258 (333)
.-+.|+|+.|+|||+|++.+.+.......-....++.. ..+...+...+... . ...+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~-~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKYR-SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHHh-cC
Confidence 46889999999999999999998764321222334322 33344444444321 1 123334444 45
Q ss_pred eEEEEeCCCCc-------hhhhhccCCCCCCCcEEEEeeCChH---------HHhhcccc-eEecCCCCHHHHHHHHHhh
Q 046889 259 VLVILDDLWVQ-------IELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAH-IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 259 ~LlVlDdv~~~-------~~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~-~~~l~~L~~~e~~~lf~~~ 321 (333)
-+|+|||+... ..+..+.-.....|..+|+|+.... +..++... .+.+++.+.++...+++++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 58999999642 1122221122233556777776542 12334333 3889999999999999988
Q ss_pred cc
Q 046889 322 RR 323 (333)
Q Consensus 322 a~ 323 (333)
+-
T Consensus 293 ~~ 294 (450)
T PRK00149 293 AE 294 (450)
T ss_pred HH
Confidence 74
No 464
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00025 Score=67.53 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=41.4
Q ss_pred ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+.....
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33456788999999999999987654 3567899999999999999987653
No 465
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.94 E-value=2.4e-05 Score=77.99 Aligned_cols=151 Identities=14% Similarity=0.227 Sum_probs=89.1
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C---CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M---FDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~---f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
..+.+||++++..+...|......-+.++|++|+|||+|++.+........ . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 457899999999999988765444567899999999999999987653221 1 12333421 11111 10
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCc----------hhhhhccCCCCCCCc-EEEEeeCChH-----
Q 046889 232 WLGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQ----------IELDRVGIPYGNDGC-KFLLTSRSRA----- 294 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~g~-~vivTTr~~~----- 294 (333)
+. ......+.....+...+ ..++.+|++||+... .+...+..|....|. +||-+|...+
T Consensus 256 --G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHh
Confidence 10 01112233333343333 346789999998632 223333344434444 4555554433
Q ss_pred -----HHhhcccceEecCCCCHHHHHHHHHhh
Q 046889 295 -----ACNQMQAHIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 295 -----v~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (333)
+..++ ..+.++..+.++..++++..
T Consensus 332 ~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 332 EKDRALARRF--QKIDITEPSIEETVQIINGL 361 (758)
T ss_pred hccHHHHhhC--cEEEeCCCCHHHHHHHHHHH
Confidence 23333 23899999999999999864
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.94 E-value=3.7e-05 Score=65.54 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH-HHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ-AKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCKRI 254 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l 254 (333)
.++.|.|++|.||||+.+.+... ...+. .+..|..-.. -....+|+..++..+. ...+...-...+...+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~--G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQI--GSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhC--CCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 48899999999999999999873 32221 1222211000 0001111112221111 1112222233344444
Q ss_pred c--cCceEEEEeCCCCc---hhh----hhccCCCCC-CCcEEEEeeCChHHHhhc
Q 046889 255 E--KQRVLVILDDLWVQ---IEL----DRVGIPYGN-DGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 255 ~--~k~~LlVlDdv~~~---~~~----~~l~~~~~~-~g~~vivTTr~~~v~~~~ 299 (333)
. +++.|++||++... .+- ..+...+.. .++.+|++||+..++...
T Consensus 106 ~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 4 47899999998433 111 111111222 378999999999986543
No 467
>PLN03140 ABC transporter G family member; Provisional
Probab=97.93 E-value=2.1e-05 Score=84.00 Aligned_cols=79 Identities=8% Similarity=-0.017 Sum_probs=48.1
Q ss_pred HHHHHHHccCceEEEEeCCCCchhh------hhccCCC-CCCCcEEEEeeCCh-HHHhhcccceEec------CCCCHHH
Q 046889 248 SLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPY-GNDGCKFLLTSRSR-AACNQMQAHIVDV------RTLTEEE 313 (333)
Q Consensus 248 ~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~-~~~g~~vivTTr~~-~v~~~~~~~~~~l------~~L~~~e 313 (333)
-.+.+.+..++-++++|++.+..|- ....... ...|..||+|+|.+ .....+.+..+.| -.-+.++
T Consensus 345 Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~ 424 (1470)
T PLN03140 345 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH 424 (1470)
T ss_pred eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH
Confidence 3455566667779999999877542 1221222 22377899999975 2333344444322 2246788
Q ss_pred HHHHHHhhcccCC
Q 046889 314 SWRSAEGKRRVCL 326 (333)
Q Consensus 314 ~~~lf~~~a~~~~ 326 (333)
...+|....|.++
T Consensus 425 ~~~yF~~lGf~cP 437 (1470)
T PLN03140 425 ILEFFESCGFKCP 437 (1470)
T ss_pred HHHHHHHcCCCCC
Confidence 9999998876543
No 468
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.93 E-value=0.00013 Score=63.69 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHc----cCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 247 ASLLCKRIE----KQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 247 ~~~l~~~l~----~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...+...+. ..+-++++|++.+..+ +..+..... .|..||++||..++... ++..+.+
T Consensus 174 r~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~-~d~v~~~ 241 (251)
T cd03273 174 LVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNN-ANVLFRT 241 (251)
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHh-CCEEEEE
Confidence 344555554 4567999999987643 222212222 36679999999877664 4444443
No 469
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.92 E-value=1.4e-06 Score=70.90 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
|.-..++++...+..++ .-.|+||||+||||++-.|.+..+++
T Consensus 16 ~GF~Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~ 58 (249)
T COG4674 16 GGFKALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQ 58 (249)
T ss_pred cceeeeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCC
Confidence 33345566666667777 66789999999999999988776543
No 470
>PRK08116 hypothetical protein; Validated
Probab=97.92 E-value=4.5e-05 Score=67.06 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=56.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV 259 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 259 (333)
.+.|+|+.|+|||.||..+++..... -...++++ ...++..+...+... ...+ ...+.+.+.+- -
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~--~~~~----~~~~~~~l~~~-d 180 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSS--GKED----ENEIIRSLVNA-D 180 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcc--cccc----HHHHHHHhcCC-C
Confidence 58899999999999999999987643 22344443 344555555544321 1111 22234444433 4
Q ss_pred EEEEeCCCC--chhhh-----hccCCCCCCCcEEEEeeCCh
Q 046889 260 LVILDDLWV--QIELD-----RVGIPYGNDGCKFLLTSRSR 293 (333)
Q Consensus 260 LlVlDdv~~--~~~~~-----~l~~~~~~~g~~vivTTr~~ 293 (333)
||||||+.. ..+|. .+.-.....+..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999942 22222 22111122356688888754
No 471
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00022 Score=67.47 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=42.5
Q ss_pred ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
|.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+.....
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999999987765 5688999999999999999987653
No 472
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.91 E-value=0.0011 Score=66.75 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=85.6
Q ss_pred cccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
...++|.+...+.|..++.. ....++.++||+|+||||+++.+..... ..|.. +..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccch
Confidence 34578999999999887752 2334899999999999999999998764 22211 2223222322211110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh---------hhhc--------------cCCCCCCCcEE
Q 046889 230 AGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE---------LDRV--------------GIPYGNDGCKF 286 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~l--------------~~~~~~~g~~v 286 (333)
. .+...........+... .....+++||++..... +..+ ..++.-.+..+
T Consensus 396 -~-----~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -R-----TYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -h-----ccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0 00111111222223222 22445789998853311 1111 11222234555
Q ss_pred EEeeCChHHHhhcccce--EecCCCCHHHHHHHHHhhcc
Q 046889 287 LLTSRSRAACNQMQAHI--VDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 287 ivTTr~~~v~~~~~~~~--~~l~~L~~~e~~~lf~~~a~ 323 (333)
|.|+....+...+-++. +.+.+++++|-.++.+++..
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 66665544322232332 89999999999888877764
No 473
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.91 E-value=0.0001 Score=70.13 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=82.7
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC
Q 046889 157 YNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP 220 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~ 220 (333)
..+.|.+..++.+...+.- ...+-+.++||.|+|||++++.+++....... .....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4456778887777666531 12346899999999999999999988642211 112233333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch---------h-----hhhccC---C
Q 046889 221 SITKIQDEIAGWLGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI---------E-----LDRVGI---P 278 (333)
Q Consensus 221 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---------~-----~~~l~~---~ 278 (333)
.++ .. +.. ........+.+.. .+++++|+|||++... + +..+.. .
T Consensus 261 ---eLl----~k-----yvG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 261 ---ELL----NK-----YVG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred ---hhc----cc-----ccc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 111 00 000 0111111122111 2368999999986421 1 112211 1
Q ss_pred CCC-CCcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhcc
Q 046889 279 YGN-DGCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 279 ~~~-~g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
... .+..||.||...+.... .. +..|.+...+.++..++|.++..
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 111 24456667766554221 11 22388999999999999988753
No 474
>PLN03130 ABC transporter C family member; Provisional
Probab=97.91 E-value=2.7e-05 Score=84.23 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-CC-eEEEEEeCCCCCH----------------HH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-FD-EVAMAVVSQTPSI----------------TK 224 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-f~-~~~wv~v~~~~~~----------------~~ 224 (333)
..++++...+..|+ .++|+|+.|+|||||++.+.+...+.. . .. .....+++|.+.+ ++
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e 708 (1622)
T PLN03130 631 PTLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708 (1622)
T ss_pred ceeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence 35677776667777 999999999999999999999876543 1 10 1112345555421 12
Q ss_pred HHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh-------hhccCCCC
Q 046889 225 IQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPYG 280 (333)
Q Consensus 225 ~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~ 280 (333)
-..+.++..++. +..-...+..+-.|.+.+-.++-+++|||+.+..|- .......
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~- 787 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE- 787 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-
Confidence 233333333321 111112344566788888889999999999877442 1211111
Q ss_pred CCCcEEEEeeCChHHHhh
Q 046889 281 NDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~ 298 (333)
..+..+|++||.......
T Consensus 788 l~~kTvIlVTH~l~~l~~ 805 (1622)
T PLN03130 788 LRGKTRVLVTNQLHFLSQ 805 (1622)
T ss_pred hcCCEEEEEECCHhHHHh
Confidence 136778999999877554
No 475
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.90 E-value=2.4e-05 Score=84.29 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCH--HHH--------------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSI--TKI-------------- 225 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~--~~~-------------- 225 (333)
.++++...+..|+ +++|+|++|+|||||++.+.+...+... ++.. ..+++|.+.+ ..+
T Consensus 441 ~l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~-iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 441 VLKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-ISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-EEEEeCCCccCCccHHHHHHhccccchHH
Confidence 3445555555566 8999999999999999999987654321 1111 2234444311 001
Q ss_pred HHHHHHHhCC---------CC-------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh-hccCCCCC
Q 046889 226 QDEIAGWLGI---------KE-------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD-RVGIPYGN 281 (333)
Q Consensus 226 ~~~i~~~l~~---------~~-------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~-~l~~~~~~ 281 (333)
...+++.+++ .+ ....+ .+..+-.|.+.+-.++-+++|||+.+..| +. .+.....
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~- 596 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM- 596 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 1111221111 00 01112 34456678888888999999999987744 21 1111111
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|..+|++||+...... +++.+.+
T Consensus 597 ~~~tvilvtH~~~~~~~-ad~ii~l 620 (1490)
T TIGR01271 597 SNKTRILVTSKLEHLKK-ADKILLL 620 (1490)
T ss_pred cCCeEEEEeCChHHHHh-CCEEEEE
Confidence 37789999999988764 4444444
No 476
>PLN03232 ABC transporter C family member; Provisional
Probab=97.90 E-value=2.4e-05 Score=84.34 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=79.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-C-C-eEEEEEeCCCCCH----------------HHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-F-D-EVAMAVVSQTPSI----------------TKI 225 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f-~-~~~wv~v~~~~~~----------------~~~ 225 (333)
.++++...+..|+ .++|+|++|+|||||++.+.+...+... . . .....+++|.+.+ ++-
T Consensus 632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~ 709 (1495)
T PLN03232 632 TLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESER 709 (1495)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHH
Confidence 4666666666777 8999999999999999999987654321 1 0 0112345555421 112
Q ss_pred HHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh-------hhccCCCCC
Q 046889 226 QDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPYGN 281 (333)
Q Consensus 226 ~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~~ 281 (333)
..++++..++. +..-...+..+-.|.+.+-.++-+++|||+.+..|- ..+... ..
T Consensus 710 ~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~-~l 788 (1495)
T PLN03232 710 YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD-EL 788 (1495)
T ss_pred HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh-hh
Confidence 23333333321 001111344566788888889999999999877441 222111 12
Q ss_pred CCcEEEEeeCChHHHhh
Q 046889 282 DGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~ 298 (333)
.+..+|++||.......
T Consensus 789 ~~kT~IlvTH~~~~l~~ 805 (1495)
T PLN03232 789 KGKTRVLVTNQLHFLPL 805 (1495)
T ss_pred cCCEEEEEECChhhHHh
Confidence 36678889998876544
No 477
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=2.5e-05 Score=60.66 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 046889 181 IGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 181 i~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
|.|+|+.|+||||+++.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999998874
No 478
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.89 E-value=3.7e-05 Score=83.07 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCH----------------HH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSI----------------TK 224 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~----------------~~ 224 (333)
..++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. ...+++|.+.. .+
T Consensus 652 ~~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~ 728 (1522)
T TIGR00957 652 PTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAWIQNDSLRENILFGKALNEK 728 (1522)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-EEEEEcCCccccCCcHHHHhhcCCccCHH
Confidence 35666666666777 8999999999999999999987654321 111 12344444311 01
Q ss_pred HHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh-------hhccCCC-
Q 046889 225 IQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPY- 279 (333)
Q Consensus 225 ~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~- 279 (333)
-..++++..... ...-...+..+-.|.+.+-.++-+++|||+.+..|- +.+..+.
T Consensus 729 ~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~ 808 (1522)
T TIGR00957 729 YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808 (1522)
T ss_pred HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 112222222110 011112345566788899999999999999877442 2221111
Q ss_pred CCCCcEEEEeeCChHHHhhcccceEec
Q 046889 280 GNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 280 ~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
...+..+|++||+...... +++.+.|
T Consensus 809 ~~~~~tvIlvTH~~~~l~~-~D~ii~l 834 (1522)
T TIGR00957 809 VLKNKTRILVTHGISYLPQ-VDVIIVM 834 (1522)
T ss_pred hhcCCEEEEEeCChhhhhh-CCEEEEe
Confidence 1236789999999988765 4444444
No 479
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.89 E-value=0.00014 Score=63.15 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHc----cCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889 247 ASLLCKRIE----KQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVD 305 (333)
Q Consensus 247 ~~~l~~~l~----~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~ 305 (333)
...+...+. ..+-++++|++.+..+ +......... ++.||+|||..++. .++++.+.
T Consensus 166 r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~-~~~d~i~~ 232 (243)
T cd03272 166 LVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELL-EVADKFYG 232 (243)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHH-hhCCEEEE
Confidence 445666663 3567999999987644 2222222222 67799999987765 45555543
No 480
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.89 E-value=8.6e-06 Score=73.58 Aligned_cols=124 Identities=15% Similarity=0.318 Sum_probs=75.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcC--CC----------eEEEEEeCCCC----CHHHH-------------HHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKM--FD----------EVAMAVVSQTP----SITKI-------------QDEIA 230 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~----------~~~wv~v~~~~----~~~~~-------------~~~i~ 230 (333)
++.|+|.+|+|||||++.+.+....... +. ..+-..++... +...+ .-.|+
T Consensus 411 vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveIL 490 (593)
T COG2401 411 VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEIL 490 (593)
T ss_pred eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHH
Confidence 8999999999999999999887643211 10 00111111111 11122 23455
Q ss_pred HHhCCCC-------CCC-CCHHHHHHHHHHHHccCceEEEEeCCCCchh-------hhhccCCCCCCCcEEEEeeCChHH
Q 046889 231 GWLGIKE-------LPD-NDELVRASLLCKRIEKQRVLVILDDLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 231 ~~l~~~~-------~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v 295 (333)
+..|+.+ ... .+.+.-..+|.+.+.+++-+++.|+.....| ...+.-.....|..++++||.+++
T Consensus 491 nraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 491 NRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred HhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 5555531 111 1233446789999999999999998876543 112211112348899999999999
Q ss_pred Hhhcccce
Q 046889 296 CNQMQAHI 303 (333)
Q Consensus 296 ~~~~~~~~ 303 (333)
.+.+....
T Consensus 571 ~~AL~PD~ 578 (593)
T COG2401 571 GNALRPDT 578 (593)
T ss_pred HhccCCce
Confidence 88886655
No 481
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.89 E-value=4e-05 Score=81.97 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=90.3
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----hhc--------------CCCeEEEEEeCCCC------
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----EKK--------------MFDEVAMAVVSQTP------ 220 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~~~--------------~f~~~~wv~v~~~~------ 220 (333)
++++...+.+|+ +++|+|++|+|||||++.+.+... ..+ .+.. ...++.|..
T Consensus 77 L~~vs~~i~~Ge--~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~-~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 77 LKPMDGLIKPGE--LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRG-DVVYNAETDVHFPHL 153 (1394)
T ss_pred eeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCc-eeEEeccccccCCCC
Confidence 334444445566 999999999999999999987641 110 0110 012233321
Q ss_pred CH----------------------H----HHHHHHHHHhCCCCCC-----------CCCHHHHHHHHHHHHccCceEEEE
Q 046889 221 SI----------------------T----KIQDEIAGWLGIKELP-----------DNDELVRASLLCKRIEKQRVLVIL 263 (333)
Q Consensus 221 ~~----------------------~----~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l~~k~~LlVl 263 (333)
++ . ...+.+++.+++.... -...+..+-.+.+.|..++-++++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 10 0 1123356666664211 112344556677788888889999
Q ss_pred eCCCCchhh------hhccCCCC-CCCcEEEEeeCCh-HHHhhcccceEecC------CCCHHHHHHHHHhhcccCC
Q 046889 264 DDLWVQIEL------DRVGIPYG-NDGCKFLLTSRSR-AACNQMQAHIVDVR------TLTEEESWRSAEGKRRVCL 326 (333)
Q Consensus 264 Ddv~~~~~~------~~l~~~~~-~~g~~vivTTr~~-~v~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~~~ 326 (333)
|++.+..|. ..+..... ..|..||+|+|+. .....+.++.+.|. .-+.+++...|....|.+.
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 999877542 22212222 2377899999985 33334444442222 2357888999988765443
No 482
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.88 E-value=0.00016 Score=67.11 Aligned_cols=146 Identities=13% Similarity=0.191 Sum_probs=80.2
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
..+.|-+...+.|...+. . ...+-+.++||+|+|||+||+.+.+... ..| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence 456677777776665542 1 1345789999999999999999998753 122 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch------------h----hhhccCC---C-CCCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI------------E----LDRVGIP---Y-GNDG 283 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~---~-~~~g 283 (333)
.+... .++ .........+.......+++|+|||+.... . +..+... + ...+
T Consensus 214 ~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11111 111 111112222333334578999999975320 0 1111111 1 2236
Q ss_pred cEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||+||+..+.... .. ...+.+...+.++...+|+...
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 678999987765322 11 1227787777888777777543
No 483
>PRK08118 topology modulation protein; Reviewed
Probab=97.88 E-value=3.9e-05 Score=62.56 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCeEEE
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEK-KMFDEVAM 213 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w 213 (333)
.|.|+|++|+||||||+.++...... -+|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999887543 34565654
No 484
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.88 E-value=0.00012 Score=73.59 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH-HhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA-KEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCK 252 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 252 (333)
+.+++.|+|||+.||||+++.+.-.. -.+... ++.+.... .-.++..|+..++..+. ...+...-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~----~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL----PIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC----CcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 34588999999999999999986442 111110 11111000 00011111111111100 11111222222333
Q ss_pred HHc--cCceEEEEeCCCCchhh---hhc----cCCCCCCCcEEEEeeCChHHHhhcc
Q 046889 253 RIE--KQRVLVILDDLWVQIEL---DRV----GIPYGNDGCKFLLTSRSRAACNQMQ 300 (333)
Q Consensus 253 ~l~--~k~~LlVlDdv~~~~~~---~~l----~~~~~~~g~~vivTTr~~~v~~~~~ 300 (333)
.+. ..+.|++||++....+. ..+ ...+...|+.+|+|||+.++.....
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~ 457 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMY 457 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHh
Confidence 333 47889999999765331 111 1122334889999999998865443
No 485
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00034 Score=68.61 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=86.1
Q ss_pred ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhh---------------------cCCCe
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEK---------------------KMFDE 210 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~---------------------~~f~~ 210 (333)
|.....++|.+...+.|...+..++.. .+.++|+.|+||||+|+.+.....-. .+|+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 344567899999999999999887654 58899999999999999888765311 11221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEE
Q 046889 211 VAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKF 286 (333)
Q Consensus 211 ~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~v 286 (333)
. .+......... .++.++..+... -+.+++-++|+|++... ..++.+. +.....++.+
T Consensus 93 ~-~ld~~~~~~vd-~Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 93 H-ELDAASNNSVD-DIRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred E-EecccccCCHH-HHHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 1 11111111111 111111111110 01235668999988654 2333331 2222335666
Q ss_pred EEee-CChHHHhhcccce--EecCCCCHHHHHHHHHhh
Q 046889 287 LLTS-RSRAACNQMQAHI--VDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 287 ivTT-r~~~v~~~~~~~~--~~l~~L~~~e~~~lf~~~ 321 (333)
|++| ....+...+..+. +.+.++++++....+.+.
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~i 192 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYV 192 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHH
Confidence 6655 4444443333333 889999998888777654
No 486
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.86 E-value=1.2e-05 Score=64.27 Aligned_cols=119 Identities=18% Similarity=0.281 Sum_probs=66.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHh------------------------------hcCCCeEEEEEe--CCCC-C
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKE------------------------------KKMFDEVAMAVV--SQTP-S 221 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------------------------------~~~f~~~~wv~v--~~~~-~ 221 (333)
.+. ++-++||||+|||||...+.+...- ...|.-.+|-+. .++. .
T Consensus 24 aGe--~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~ 101 (248)
T COG4138 24 AGE--ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKT 101 (248)
T ss_pred cce--EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHH
Confidence 455 8899999999999998877644321 112333344322 2221 2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHH------HHH-HHc------cCceEEEEeCCCCchh------hhhccCCCCCC
Q 046889 222 ITKIQDEIAGWLGIKELPDNDELVRASL------LCK-RIE------KQRVLVILDDLWVQIE------LDRVGIPYGND 282 (333)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~-~l~------~k~~LlVlDdv~~~~~------~~~l~~~~~~~ 282 (333)
....+..|...+++.+....+..++... +.. .|+ -..-|+++|++.+..| ++.+...+...
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence 2345566666666643322222211100 000 000 0223999999988754 45555556667
Q ss_pred CcEEEEeeCChHH
Q 046889 283 GCKFLLTSRSRAA 295 (333)
Q Consensus 283 g~~vivTTr~~~v 295 (333)
|-.||+.+|+.+-
T Consensus 182 G~~vims~HDLNh 194 (248)
T COG4138 182 GLAIVMSSHDLNH 194 (248)
T ss_pred CcEEEEeccchhh
Confidence 8899999998754
No 487
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.86 E-value=9.8e-05 Score=67.84 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=82.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ 257 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 257 (333)
...+.|+|+.|.|||-|++.+.+..... ......++++. +.....++..+.. .....+++.. .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~s----e~f~~~~v~a~~~---------~~~~~Fk~~y--~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTS----EDFTNDFVKALRD---------NEMEKFKEKY--S 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccH----HHHHHHHHHHHHh---------hhHHHHHHhh--c
Confidence 5589999999999999999999987632 33233333332 3334444433322 1234466666 5
Q ss_pred ceEEEEeCCCCc-------hhhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHh
Q 046889 258 RVLVILDDLWVQ-------IELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEG 320 (333)
Q Consensus 258 ~~LlVlDdv~~~-------~~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~ 320 (333)
--++++||++.. ..+..+.-.....|..||+|++..+ +..++.... +.+.+.+.+....++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 568999999742 2222222222344668999886542 234454555 89999999999999998
Q ss_pred hccc
Q 046889 321 KRRV 324 (333)
Q Consensus 321 ~a~~ 324 (333)
++-.
T Consensus 256 ka~~ 259 (408)
T COG0593 256 KAED 259 (408)
T ss_pred HHHh
Confidence 7643
No 488
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.86 E-value=0.00014 Score=60.80 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=49.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ-TPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR 253 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 253 (333)
++++.++||.|+||||.+-.+....... -..+..++... .....+-++..++.++.+- ....+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3589999999999999888887776644 22334444321 1233556777788887641 1222344443333333
Q ss_pred Hcc-CceEEEEeCC
Q 046889 254 IEK-QRVLVILDDL 266 (333)
Q Consensus 254 l~~-k~~LlVlDdv 266 (333)
+.. +.-++++|=+
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 333 3457777743
No 489
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.86 E-value=2.3e-05 Score=72.24 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+-.+.+.+.++.....+|+ ++++|||+|.||||+++.++.-..+
T Consensus 545 F~Y~p~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv 590 (790)
T KOG0056|consen 545 FAYDPGKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDV 590 (790)
T ss_pred EecCCCCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhc
Confidence 344557778888888877888 9999999999999999999866543
No 490
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=4.2e-05 Score=74.99 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE---------------EeCCCC---------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA---------------VVSQTP--------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---------------~v~~~~--------- 220 (333)
.++.+.....+++ +.+|.|++|+|||||...+.+....+....+.+.+ +|.|+.
T Consensus 45 iL~~vsg~~~~Ge--l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 45 ILKGVSGTAKPGE--LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred eeeCcEEEEecCe--EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 3333333334455 99999999999999999999876543222222222 233321
Q ss_pred ------------------CHHHHHHHHHHHhCCCCCCCC-----------CHHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889 221 ------------------SITKIQDEIAGWLGIKELPDN-----------DELVRASLLCKRIEKQRVLVILDDLWVQIE 271 (333)
Q Consensus 221 ------------------~~~~~~~~i~~~l~~~~~~~~-----------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 271 (333)
......++++.++++....+. ..+..+-.+.-.+-..+.++++|++.+..|
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 123456677778877521111 123445567777778899999999997754
Q ss_pred hh------hccCCCCCCCcEEEEeeCChHH--Hhhc------c-cce-EecCCCCHHHHHHHHHhhccc
Q 046889 272 LD------RVGIPYGNDGCKFLLTSRSRAA--CNQM------Q-AHI-VDVRTLTEEESWRSAEGKRRV 324 (333)
Q Consensus 272 ~~------~l~~~~~~~g~~vivTTr~~~v--~~~~------~-~~~-~~l~~L~~~e~~~lf~~~a~~ 324 (333)
-. .+.......|+.||+|=|.+.- -..+ + ... |.= +..++.++|...-+.
T Consensus 203 S~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G---~~~~~~~ff~~~G~~ 268 (613)
T KOG0061|consen 203 SFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG---SPRELLEFFSSLGFP 268 (613)
T ss_pred hhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec---CHHHHHHHHHhCCCC
Confidence 11 1111223338888989888742 1111 1 111 322 347778888877665
No 491
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.85 E-value=6.4e-05 Score=80.66 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..++.+...+.+|+ +++|+|++|+|||||++.+.+...+
T Consensus 399 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 399 EIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred ceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccC
Confidence 46788888788888 9999999999999999999877543
No 492
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00033 Score=69.03 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=85.1
Q ss_pred ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
|.....++|.+..+..|..++..++. +.+.++||.|+||||+|+.+........... ...+-..+.....
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---------~~~pC~~C~~~~~ 84 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---------LLEPCQECIENVN 84 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---------CCCchhHHHHhhc
Confidence 44456788999999999999987653 4678999999999999999986653211100 0000000000000
Q ss_pred -H---hCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HHHh
Q 046889 232 -W---LGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AACN 297 (333)
Q Consensus 232 -~---l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v~~ 297 (333)
. +..........++ +..+.+.+ .+++.++|+|++... ..+..+. +..+...+.+|++|.+. .+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 0000000011121 12222222 246679999998643 2333331 11222355555555443 3333
Q ss_pred hccc--ceEecCCCCHHHHHHHHHhh
Q 046889 298 QMQA--HIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 298 ~~~~--~~~~l~~L~~~e~~~lf~~~ 321 (333)
.+.. ..+.+.+++.++....+.+.
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHH
Confidence 3332 23899999999988777654
No 493
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.82 E-value=0.00019 Score=67.28 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
..+.|.+..++.|...+. . ....-+.++||+|+|||+||+.+.+... ..| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc----
Confidence 345677777777766553 1 1234688999999999999999998764 222 222111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhccC---CC-CCCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVGI---PY-GNDG 283 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~---~~-~~~g 283 (333)
.+... .++ .........+.......+++|+||++.... .+..+.. .+ ...+
T Consensus 252 eL~~k---~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELIQK---YLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhhhh---hcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11110 001 111112222223334577899999874220 0111110 11 1236
Q ss_pred cEEEEeeCChHHHhhc--c----cceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAACNQM--Q----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v~~~~--~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||+||+..+..... . ...|.+...+.++..++|..+.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 6889999877654321 1 1228888888999999998665
No 494
>PRK13695 putative NTPase; Provisional
Probab=97.82 E-value=1.5e-05 Score=65.41 Aligned_cols=25 Identities=56% Similarity=0.748 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.++|+|++|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999887654
No 495
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.82 E-value=0.00022 Score=59.79 Aligned_cols=119 Identities=10% Similarity=0.076 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhh----------------cCCCeEEEEEeCC--C----C-CH-HHHHHHHHHHhCC
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEK----------------KMFDEVAMAVVSQ--T----P-SI-TKIQDEIAGWLGI 235 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~----------------~~f~~~~wv~v~~--~----~-~~-~~~~~~i~~~l~~ 235 (333)
+.+|+|+||+|||||+..++...... ......+.+.+.. . . .. ......+++. ..
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 101 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS-NK 101 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc-cc
Confidence 77899999999999999987432110 0111223333221 0 0 01 1233334433 11
Q ss_pred -C--CCCCCC-HHHHHHHHHHHH----ccCceEEEEeCCCCchh------hhhccCCC-CC--CCcEEEEeeCChHHHhh
Q 046889 236 -K--ELPDND-ELVRASLLCKRI----EKQRVLVILDDLWVQIE------LDRVGIPY-GN--DGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 236 -~--~~~~~~-~~~~~~~l~~~l----~~k~~LlVlDdv~~~~~------~~~l~~~~-~~--~g~~vivTTr~~~v~~~ 298 (333)
. .....+ .+.....+...+ ..++-+++||++....+ +..+.... .. .++.||++||+...+..
T Consensus 102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 0 111112 223344555555 47889999999987644 22222221 22 24579999999887665
Q ss_pred c
Q 046889 299 M 299 (333)
Q Consensus 299 ~ 299 (333)
+
T Consensus 182 ~ 182 (198)
T cd03276 182 S 182 (198)
T ss_pred c
Confidence 5
No 496
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00032 Score=68.41 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=43.0
Q ss_pred cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.|.....++|.+...+.|...+..++. +.+.++|+.|+||||+|+.+.....
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 344556789999999999999988765 4578999999999999999987753
No 497
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.81 E-value=0.00017 Score=62.80 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=92.6
Q ss_pred cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE-EEeCCCCCHHHHHHHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM-AVVSQTPSITKIQDEIA 230 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~~~~~i~ 230 (333)
.|.....+.|.+.++.-|...+..........+||+|.|||+-++.+.......+.|.+.+. .++|...... +.+.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~-- 107 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE-- 107 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh--
Confidence 45556678899999999999998877789999999999999999988877654455665543 2222221111 0000
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHc--cCc-eEEEEeCCCCc--hhhhhccC--CCCCCCcEEEEeeCChHH-Hhhcccc
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIE--KQR-VLVILDDLWVQ--IELDRVGI--PYGNDGCKFLLTSRSRAA-CNQMQAH 302 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~--~k~-~LlVlDdv~~~--~~~~~l~~--~~~~~g~~vivTTr~~~v-~~~~~~~ 302 (333)
...+...+......... .++ .++|||+..+. +.|..+.- ......+++|+++..... ...+.++
T Consensus 108 --------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 108 --------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred --------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 00011111111110111 133 48999998755 45666532 112336677777766543 2222222
Q ss_pred e--EecCCCCHHHHHHHHHhhc
Q 046889 303 I--VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 303 ~--~~l~~L~~~e~~~lf~~~a 322 (333)
. +..++|.+++...-++..+
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHH
Confidence 2 7888888776665555443
No 498
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.81 E-value=2.9e-05 Score=63.92 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.|+-+.++.+...+..|+ +-++||.+|+|||-+|+.+++-.+
T Consensus 17 qG~vK~VD~v~ltlnEGE--i~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGE--IRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred CCceEeeeeeeeeeccce--eeeeeccCCCchhHHHHHHhcccc
Confidence 455566677777777788 899999999999999999997765
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.81 E-value=0.00021 Score=63.36 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHc
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEK-KMFDEVAMAVVSQ-TPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIE 255 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 255 (333)
..+++|+|++|+||||++..+....... +.+ .+..+.... .......+......++.+-....+...+...+. .+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 3499999999999999999998776543 222 333443322 112233444455555654222334444433333 333
Q ss_pred cCceEEEEeCC
Q 046889 256 KQRVLVILDDL 266 (333)
Q Consensus 256 ~k~~LlVlDdv 266 (333)
..-++++|.+
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3468888854
No 500
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.79 E-value=0.00026 Score=64.31 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=62.9
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHH
Q 046889 168 DIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTP-SITKIQDEIAGWLGIKELPDNDEL 244 (333)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 244 (333)
.++..+.+ +.-..+.|+|+.|+|||||++.+.+....+ +-+. .+|+.+.+.. ++.++.+.+...+.....+.....
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~ 200 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE 200 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence 35555543 333378999999999999999998877543 2233 4677787654 567788888776665322222211
Q ss_pred -----HHHHHHHHHH--ccCceEEEEeCCC
Q 046889 245 -----VRASLLCKRI--EKQRVLVILDDLW 267 (333)
Q Consensus 245 -----~~~~~l~~~l--~~k~~LlVlDdv~ 267 (333)
.....+.+.+ .+++.+||+|++.
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1222344444 3588999999986
Done!