Query 046889
Match_columns 333
No_of_seqs 235 out of 2405
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 3.6E-26 1.2E-30 220.1 17.8 163 160-326 131-310 (549)
2 1vt4_I APAF-1 related killer D 99.9 3.3E-22 1.1E-26 198.4 12.6 159 159-322 130-311 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 6.7E-21 2.3E-25 199.5 17.5 172 152-328 119-305 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.8 3.2E-20 1.1E-24 180.4 17.7 167 153-325 120-302 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.5 1.1E-13 3.9E-18 104.2 7.5 74 14-94 3-77 (115)
6 1w5s_A Origin recognition comp 99.4 4.3E-12 1.5E-16 117.4 16.1 165 157-322 22-228 (412)
7 2qby_A CDC6 homolog 1, cell di 99.4 1.8E-12 6.2E-17 118.6 13.0 166 157-322 20-210 (386)
8 2qby_B CDC6 homolog 3, cell di 99.3 3E-11 1E-15 110.6 17.0 163 157-322 20-210 (384)
9 1fnn_A CDC6P, cell division co 99.3 5.7E-11 2E-15 108.8 18.3 166 157-323 17-207 (389)
10 2v1u_A Cell division control p 99.3 7E-11 2.4E-15 108.0 18.0 166 157-322 19-214 (387)
11 2qen_A Walker-type ATPase; unk 99.3 2.5E-11 8.7E-16 109.5 12.9 157 156-321 11-215 (350)
12 2chg_A Replication factor C sm 99.2 8.3E-10 2.8E-14 92.6 16.1 152 155-323 15-175 (226)
13 2fna_A Conserved hypothetical 99.2 3.2E-10 1.1E-14 102.4 13.7 157 156-322 12-222 (357)
14 1njg_A DNA polymerase III subu 99.1 3.1E-09 1.1E-13 90.2 15.8 163 154-323 20-199 (250)
15 2pcj_A ABC transporter, lipopr 98.9 2.6E-09 8.7E-14 90.4 8.8 135 169-306 23-212 (224)
16 3fvq_A Fe(3+) IONS import ATP- 98.9 2.1E-09 7.1E-14 96.7 8.6 139 166-306 20-212 (359)
17 1vpl_A ABC transporter, ATP-bi 98.9 1.8E-09 6.1E-14 93.1 7.5 139 166-306 31-219 (256)
18 3gfo_A Cobalt import ATP-bindi 98.9 1.2E-09 4.2E-14 95.1 6.2 139 166-306 24-217 (275)
19 4g1u_C Hemin import ATP-bindin 98.9 6E-09 2.1E-13 90.4 10.4 144 161-306 22-221 (266)
20 2olj_A Amino acid ABC transpor 98.9 3.1E-09 1.1E-13 92.0 8.4 140 165-306 39-232 (263)
21 3te6_A Regulatory protein SIR3 98.9 3.9E-08 1.3E-12 87.1 15.6 166 159-324 22-213 (318)
22 3tui_C Methionine import ATP-b 98.9 2.9E-09 1E-13 95.8 8.4 140 165-306 43-237 (366)
23 1jbk_A CLPB protein; beta barr 98.9 7.6E-09 2.6E-13 84.6 10.3 150 155-318 20-194 (195)
24 2nq2_C Hypothetical ABC transp 98.9 1.8E-09 6.2E-14 93.0 5.9 133 170-306 25-202 (253)
25 3rlf_A Maltose/maltodextrin im 98.9 2.9E-09 1E-13 96.4 6.9 137 168-306 21-207 (381)
26 1sxj_B Activator 1 37 kDa subu 98.8 1.4E-08 4.7E-13 90.4 10.9 155 153-322 17-179 (323)
27 1ji0_A ABC transporter; ATP bi 98.8 2.9E-09 1E-13 91.0 6.2 138 167-306 23-212 (240)
28 1b0u_A Histidine permease; ABC 98.8 3.8E-09 1.3E-13 91.5 6.6 139 166-306 22-226 (262)
29 2qi9_C Vitamin B12 import ATP- 98.8 5.3E-09 1.8E-13 89.8 7.3 132 173-306 23-206 (249)
30 2pze_A Cystic fibrosis transme 98.8 2.8E-08 9.5E-13 84.3 11.7 132 170-306 28-202 (229)
31 3d31_A Sulfate/molybdate ABC t 98.8 1.9E-08 6.4E-13 90.4 10.9 134 172-307 22-202 (348)
32 2zu0_C Probable ATP-dependent 98.8 1.4E-08 4.8E-13 88.2 9.7 141 164-306 34-238 (267)
33 2it1_A 362AA long hypothetical 98.8 6.3E-09 2.1E-13 93.9 7.6 135 170-306 23-207 (362)
34 3tif_A Uncharacterized ABC tra 98.8 5.6E-09 1.9E-13 89.0 6.9 133 171-306 26-218 (235)
35 2onk_A Molybdate/tungstate ABC 98.8 8E-09 2.7E-13 88.2 7.7 128 179-306 25-200 (240)
36 1z47_A CYSA, putative ABC-tran 98.8 4.5E-09 1.5E-13 94.6 6.2 140 165-306 30-219 (355)
37 2yyz_A Sugar ABC transporter, 98.8 5.4E-09 1.8E-13 94.3 6.1 133 172-306 25-207 (359)
38 2yz2_A Putative ABC transporte 98.8 1.2E-08 4E-13 88.7 8.0 134 171-306 28-211 (266)
39 1g6h_A High-affinity branched- 98.8 1.1E-08 3.8E-13 88.3 7.6 140 165-306 22-226 (257)
40 1g29_1 MALK, maltose transport 98.8 9.9E-09 3.4E-13 93.1 7.2 133 172-306 25-213 (372)
41 1sgw_A Putative ABC transporte 98.8 3.9E-09 1.3E-13 88.5 4.2 134 167-303 26-203 (214)
42 1iqp_A RFCS; clamp loader, ext 98.8 2.4E-08 8.2E-13 89.0 9.5 151 154-322 22-182 (327)
43 1oxx_K GLCV, glucose, ABC tran 98.8 6.5E-09 2.2E-13 93.7 5.7 137 168-306 23-214 (353)
44 1v43_A Sugar-binding transport 98.8 6.5E-09 2.2E-13 94.2 5.7 138 167-306 28-215 (372)
45 2d2e_A SUFC protein; ABC-ATPas 98.7 1.4E-08 4.9E-13 87.3 7.3 136 169-306 22-217 (250)
46 1mv5_A LMRA, multidrug resista 98.7 1.3E-08 4.4E-13 87.2 5.8 128 173-306 25-210 (243)
47 2pjz_A Hypothetical protein ST 98.7 3.6E-08 1.2E-12 85.2 8.6 131 170-307 25-200 (263)
48 2bbs_A Cystic fibrosis transme 98.7 8.2E-08 2.8E-12 84.2 10.3 129 173-306 61-231 (290)
49 2ff7_A Alpha-hemolysin translo 98.7 3.2E-08 1.1E-12 84.8 7.3 135 168-306 27-216 (247)
50 3ec2_A DNA replication protein 98.7 9E-08 3.1E-12 77.9 9.5 115 162-293 19-143 (180)
51 2cbz_A Multidrug resistance-as 98.7 7.5E-08 2.6E-12 82.0 9.4 130 173-306 28-201 (237)
52 2ihy_A ABC transporter, ATP-bi 98.7 8.7E-09 3E-13 90.0 3.5 142 161-306 32-236 (279)
53 3bk7_A ABC transporter ATP-bin 98.6 6.2E-08 2.1E-12 93.5 9.2 130 175-306 381-545 (607)
54 3j16_B RLI1P; ribosome recycli 98.6 1.1E-07 3.7E-12 91.7 10.7 131 174-306 101-294 (608)
55 1sxj_E Activator 1 40 kDa subu 98.6 3.1E-07 1.1E-11 82.9 13.3 163 153-322 10-206 (354)
56 1yqt_A RNAse L inhibitor; ATP- 98.6 3.5E-08 1.2E-12 94.1 6.7 137 167-306 39-231 (538)
57 2ixe_A Antigen peptide transpo 98.6 1.4E-07 4.7E-12 82.0 9.9 139 165-306 34-229 (271)
58 2z4s_A Chromosomal replication 98.6 5E-07 1.7E-11 84.1 14.0 130 178-322 130-276 (440)
59 3ozx_A RNAse L inhibitor; ATP 98.6 2.8E-08 9.7E-13 94.6 5.6 128 180-307 296-460 (538)
60 3h4m_A Proteasome-activating n 98.6 8.8E-07 3E-11 77.4 14.6 149 156-324 16-203 (285)
61 1yqt_A RNAse L inhibitor; ATP- 98.6 4.1E-08 1.4E-12 93.6 6.2 130 175-306 311-475 (538)
62 3pvs_A Replication-associated 98.6 3.5E-07 1.2E-11 85.2 12.3 147 153-323 22-179 (447)
63 3j16_B RLI1P; ribosome recycli 98.6 1E-07 3.5E-12 91.9 8.5 129 179-307 379-542 (608)
64 3syl_A Protein CBBX; photosynt 98.6 5.1E-07 1.7E-11 79.9 12.2 149 158-323 32-218 (309)
65 2chq_A Replication factor C sm 98.6 2.2E-07 7.6E-12 82.4 9.5 151 154-322 14-174 (319)
66 2ghi_A Transport protein; mult 98.6 1E-07 3.5E-12 82.4 6.9 134 169-306 39-226 (260)
67 3bk7_A ABC transporter ATP-bin 98.5 6.2E-08 2.1E-12 93.5 5.2 138 166-306 108-301 (607)
68 4gp7_A Metallophosphoesterase; 98.5 3.9E-08 1.3E-12 79.5 3.2 56 244-299 88-165 (171)
69 3ozx_A RNAse L inhibitor; ATP 98.5 2.1E-07 7.2E-12 88.6 8.7 124 179-303 26-207 (538)
70 2ehv_A Hypothetical protein PH 98.5 2.4E-07 8.3E-12 79.2 8.3 118 173-296 27-185 (251)
71 2qz4_A Paraplegin; AAA+, SPG7, 98.5 5.4E-06 1.8E-10 71.3 16.8 147 156-322 5-190 (262)
72 3nh6_A ATP-binding cassette SU 98.5 2E-07 6.9E-12 82.2 7.1 138 165-306 69-261 (306)
73 2iw3_A Elongation factor 3A; a 98.5 4E-07 1.4E-11 91.5 9.8 140 160-306 445-618 (986)
74 2p65_A Hypothetical protein PF 98.5 3.2E-07 1.1E-11 74.5 7.4 49 155-203 20-68 (187)
75 3b5x_A Lipid A export ATP-bind 98.4 3.1E-07 1.1E-11 88.6 7.6 140 163-306 356-551 (582)
76 3bos_A Putative DNA replicatio 98.4 4.1E-07 1.4E-11 77.1 7.4 140 157-323 28-188 (242)
77 1sxj_D Activator 1 41 kDa subu 98.4 3.5E-07 1.2E-11 82.4 7.2 163 154-322 34-205 (353)
78 1jr3_A DNA polymerase III subu 98.4 1.7E-06 5.8E-11 78.5 11.7 160 155-322 14-191 (373)
79 3gd7_A Fusion complex of cysti 98.4 1.5E-07 5E-12 85.9 4.3 139 164-306 35-226 (390)
80 3b9p_A CG5977-PA, isoform A; A 98.4 1.6E-05 5.3E-10 69.8 17.2 145 156-322 20-202 (297)
81 1sxj_C Activator 1 40 kDa subu 98.4 1.4E-06 4.9E-11 78.2 10.4 148 153-322 21-182 (340)
82 1ye8_A Protein THEP1, hypothet 98.4 2.4E-07 8.1E-12 75.3 4.3 132 180-316 2-170 (178)
83 3pxg_A Negative regulator of g 98.4 2.9E-06 9.8E-11 79.6 12.2 147 155-322 178-338 (468)
84 1sxj_A Activator 1 95 kDa subu 98.4 1.5E-06 5.2E-11 82.6 10.4 162 153-323 35-223 (516)
85 2cvh_A DNA repair and recombin 98.3 1.9E-06 6.5E-11 72.0 9.6 114 173-294 17-157 (220)
86 2w0m_A SSO2452; RECA, SSPF, un 98.3 1.8E-06 6E-11 72.8 9.4 114 173-293 20-168 (235)
87 1l8q_A Chromosomal replication 98.3 3.4E-06 1.1E-10 75.2 11.4 140 165-323 22-180 (324)
88 4a74_A DNA repair and recombin 98.3 1.3E-06 4.4E-11 73.6 8.2 127 180-307 27-198 (231)
89 1r6b_X CLPA protein; AAA+, N-t 98.3 1.6E-05 5.3E-10 79.2 17.2 154 155-321 184-361 (758)
90 2kjq_A DNAA-related protein; s 98.3 5.8E-07 2E-11 70.8 5.2 26 179-204 37-62 (149)
91 3pfi_A Holliday junction ATP-d 98.3 9.3E-06 3.2E-10 72.7 13.3 139 155-322 27-197 (338)
92 3ux8_A Excinuclease ABC, A sub 98.3 1E-06 3.6E-11 86.4 7.5 62 244-306 207-276 (670)
93 1qvr_A CLPB protein; coiled co 98.3 5.5E-06 1.9E-10 83.5 12.9 154 155-320 168-343 (854)
94 3cf0_A Transitional endoplasmi 98.3 3.1E-05 1.1E-09 68.2 16.4 147 156-322 14-199 (301)
95 1xwi_A SKD1 protein; VPS4B, AA 98.2 9.2E-05 3.2E-09 65.8 18.3 147 156-322 11-192 (322)
96 3uk6_A RUVB-like 2; hexameric 98.2 8.2E-06 2.8E-10 73.9 11.2 48 156-203 43-95 (368)
97 2iw3_A Elongation factor 3A; a 98.2 1.9E-06 6.5E-11 86.7 7.4 82 226-307 880-972 (986)
98 2yl4_A ATP-binding cassette SU 98.2 1.6E-06 5.4E-11 83.9 6.6 135 165-303 359-551 (595)
99 2eyu_A Twitching motility prot 98.2 1.1E-06 3.7E-11 75.9 4.5 119 164-296 15-136 (261)
100 2pt7_A CAG-ALFA; ATPase, prote 98.2 1.5E-06 5E-11 77.8 5.2 142 165-320 160-308 (330)
101 1hqc_A RUVB; extended AAA-ATPa 98.2 1.7E-05 5.8E-10 70.4 12.2 138 155-323 10-182 (324)
102 3eie_A Vacuolar protein sortin 98.2 2.8E-05 9.7E-10 69.1 13.6 147 155-323 16-198 (322)
103 3b60_A Lipid A export ATP-bind 98.2 9.3E-07 3.2E-11 85.3 4.1 138 165-306 358-551 (582)
104 3d8b_A Fidgetin-like protein 1 98.2 3.9E-05 1.4E-09 69.3 14.7 145 156-322 83-264 (357)
105 2w58_A DNAI, primosome compone 98.2 4.4E-06 1.5E-10 69.0 7.6 88 163-268 35-126 (202)
106 3vfd_A Spastin; ATPase, microt 98.2 7E-05 2.4E-09 68.4 16.3 147 155-322 113-295 (389)
107 3jvv_A Twitching mobility prot 98.1 7.4E-07 2.5E-11 80.4 2.7 110 179-297 124-235 (356)
108 1lv7_A FTSH; alpha/beta domain 98.1 5.9E-05 2E-09 64.6 14.4 147 156-322 11-195 (257)
109 3pxi_A Negative regulator of g 98.1 1.4E-05 4.6E-10 79.7 11.8 146 155-322 178-338 (758)
110 2gno_A DNA polymerase III, gam 98.1 2.8E-05 9.5E-10 68.6 12.4 144 161-322 1-152 (305)
111 4a82_A Cystic fibrosis transme 98.1 1.5E-06 5.1E-11 83.7 4.5 138 165-306 356-548 (578)
112 3n70_A Transport activator; si 98.1 1.2E-05 4.2E-10 62.7 8.8 45 158-202 2-48 (145)
113 1d2n_A N-ethylmaleimide-sensit 98.1 1.5E-05 5.2E-10 69.0 10.1 143 158-320 34-210 (272)
114 2ce7_A Cell division protein F 98.1 4.6E-05 1.6E-09 71.2 13.9 147 156-322 15-199 (476)
115 3qf4_A ABC transporter, ATP-bi 98.1 1.2E-05 4E-10 77.6 10.1 137 165-306 358-550 (587)
116 2zan_A Vacuolar protein sortin 98.1 7.7E-05 2.6E-09 69.4 15.1 147 156-322 133-314 (444)
117 3qf4_B Uncharacterized ABC tra 98.1 1.5E-06 5.2E-11 84.0 3.6 139 165-307 370-563 (598)
118 3u61_B DNA polymerase accessor 98.1 3.4E-05 1.2E-09 68.5 12.2 139 153-315 22-171 (324)
119 4b4t_L 26S protease subunit RP 98.1 8.7E-05 3E-09 68.4 14.7 146 157-322 181-365 (437)
120 1cr0_A DNA primase/helicase; R 98.0 1.8E-05 6.3E-10 69.4 9.7 39 165-205 24-62 (296)
121 4fcw_A Chaperone protein CLPB; 98.0 2.8E-05 9.6E-10 68.6 10.6 47 157-203 17-72 (311)
122 2qp9_X Vacuolar protein sortin 98.0 8.8E-05 3E-09 66.9 14.0 147 156-323 50-231 (355)
123 1a5t_A Delta prime, HOLB; zinc 98.0 8.3E-05 2.8E-09 66.5 13.3 142 163-322 8-180 (334)
124 1ofh_A ATP-dependent HSL prote 98.0 5.3E-05 1.8E-09 66.6 11.4 46 157-202 15-74 (310)
125 4b4t_J 26S protease regulatory 98.0 0.00016 5.4E-09 65.7 14.3 147 156-322 147-332 (405)
126 3thx_A DNA mismatch repair pro 98.0 8.1E-06 2.8E-10 82.2 6.4 112 179-297 663-789 (934)
127 3co5_A Putative two-component 98.0 7.6E-06 2.6E-10 63.8 4.9 46 157-202 4-51 (143)
128 3hu3_A Transitional endoplasmi 98.0 5.2E-05 1.8E-09 71.3 11.4 148 156-323 203-386 (489)
129 4b4t_M 26S protease regulatory 97.9 0.00011 3.7E-09 67.7 13.0 146 156-322 180-365 (434)
130 4b4t_K 26S protease regulatory 97.9 0.00014 4.8E-09 66.9 13.5 48 156-203 171-231 (428)
131 4b4t_H 26S protease regulatory 97.9 0.00024 8.1E-09 65.6 14.5 145 158-322 210-393 (467)
132 4aby_A DNA repair protein RECN 97.9 2.7E-05 9.3E-10 71.7 8.2 61 244-306 300-368 (415)
133 1tf7_A KAIC; homohexamer, hexa 97.9 7.5E-06 2.6E-10 78.0 4.5 129 159-295 21-187 (525)
134 2r62_A Cell division protease 97.9 8.6E-06 2.9E-10 70.4 4.5 47 157-203 11-69 (268)
135 1nlf_A Regulatory protein REPA 97.9 2.1E-05 7.3E-10 68.4 6.8 118 173-296 27-184 (279)
136 2vf7_A UVRA2, excinuclease ABC 97.9 1.9E-05 6.4E-10 78.6 7.0 62 244-306 735-805 (842)
137 2npi_A Protein CLP1; CLP1-PCF1 97.9 1.7E-06 5.7E-11 80.7 -0.5 36 168-205 130-165 (460)
138 3ux8_A Excinuclease ABC, A sub 97.9 8.3E-06 2.8E-10 80.0 4.4 62 244-306 548-618 (670)
139 1ewq_A DNA mismatch repair pro 97.9 1.1E-05 3.6E-10 79.8 5.1 113 179-298 577-703 (765)
140 1htw_A HI0065; nucleotide-bind 97.8 8.5E-06 2.9E-10 64.6 3.5 41 160-202 17-57 (158)
141 4b4t_I 26S protease regulatory 97.8 0.00023 7.8E-09 65.1 12.8 145 157-322 182-366 (437)
142 2px0_A Flagellar biosynthesis 97.8 0.00011 3.7E-09 64.5 10.2 84 179-265 106-190 (296)
143 1tf7_A KAIC; homohexamer, hexa 97.8 1.8E-05 6.1E-10 75.4 5.3 111 175-293 280-417 (525)
144 3g5u_A MCG1178, multidrug resi 97.8 3.6E-05 1.2E-09 80.7 7.9 140 165-307 405-598 (1284)
145 2o8b_B DNA mismatch repair pro 97.8 3.6E-05 1.2E-09 78.4 7.7 114 179-302 790-921 (1022)
146 3thx_B DNA mismatch repair pro 97.8 6.1E-05 2.1E-09 75.7 8.9 110 179-297 674-800 (918)
147 1ojl_A Transcriptional regulat 97.7 8E-05 2.7E-09 65.7 8.5 45 158-202 3-49 (304)
148 1pzn_A RAD51, DNA repair and r 97.7 8.4E-05 2.9E-09 66.8 8.5 115 179-294 132-287 (349)
149 3pxi_A Negative regulator of g 97.7 0.00012 4.1E-09 72.8 10.2 143 157-322 491-675 (758)
150 3m6a_A ATP-dependent protease 97.7 0.00047 1.6E-08 65.7 13.8 47 157-203 81-133 (543)
151 1in4_A RUVB, holliday junction 97.7 3.4E-05 1.2E-09 69.0 5.5 50 154-203 22-76 (334)
152 1n0w_A DNA repair protein RAD5 97.7 0.00012 4.1E-09 61.9 8.7 118 174-294 22-175 (243)
153 2ewv_A Twitching motility prot 97.7 4.8E-05 1.7E-09 69.0 6.4 108 179-295 137-246 (372)
154 2bjv_A PSP operon transcriptio 97.7 6.7E-05 2.3E-09 64.6 7.0 47 157-203 6-54 (265)
155 2x8a_A Nuclear valosin-contain 97.7 0.00049 1.7E-08 59.6 12.0 121 181-322 47-191 (274)
156 3b85_A Phosphate starvation-in 97.7 3.7E-05 1.3E-09 63.9 4.6 128 160-298 10-163 (208)
157 3lda_A DNA repair protein RAD5 97.7 7.5E-05 2.6E-09 68.3 7.0 88 180-268 180-284 (400)
158 2qgz_A Helicase loader, putati 97.6 9.9E-05 3.4E-09 65.2 7.6 42 162-203 133-177 (308)
159 3hr8_A Protein RECA; alpha and 97.6 0.00076 2.6E-08 60.5 13.3 82 179-267 62-149 (356)
160 1wb9_A DNA mismatch repair pro 97.6 0.00018 6.1E-09 71.5 9.9 24 179-202 608-631 (800)
161 3g5u_A MCG1178, multidrug resi 97.6 6.8E-05 2.3E-09 78.6 7.0 137 165-306 1048-1242(1284)
162 2jeo_A Uridine-cytidine kinase 97.6 2.9E-05 9.9E-10 66.2 3.5 40 161-202 10-49 (245)
163 3e70_C DPA, signal recognition 97.6 0.0009 3.1E-08 59.5 13.1 30 176-205 127-156 (328)
164 1z6g_A Guanylate kinase; struc 97.6 3.1E-05 1.1E-09 64.9 3.3 37 164-202 11-47 (218)
165 3pih_A Uvrabc system protein A 97.6 0.00022 7.5E-09 71.6 9.8 63 243-306 809-880 (916)
166 3c8u_A Fructokinase; YP_612366 97.5 9.2E-05 3.1E-09 61.4 5.6 41 164-204 6-48 (208)
167 4f4c_A Multidrug resistance pr 97.5 6.9E-05 2.3E-09 78.8 5.8 131 165-298 433-618 (1321)
168 2r6f_A Excinuclease ABC subuni 97.5 0.00036 1.2E-08 69.9 10.4 62 244-306 850-920 (972)
169 1vma_A Cell division protein F 97.5 0.00056 1.9E-08 60.2 10.5 87 178-267 104-196 (306)
170 1ypw_A Transitional endoplasmi 97.5 0.00033 1.1E-08 69.9 10.0 147 156-322 203-385 (806)
171 2zr9_A Protein RECA, recombina 97.5 0.0018 6E-08 58.1 13.3 82 180-268 63-150 (349)
172 1znw_A Guanylate kinase, GMP k 97.5 6.9E-05 2.4E-09 62.1 3.8 29 172-202 16-44 (207)
173 1rz3_A Hypothetical protein rb 97.5 0.00022 7.4E-09 58.8 6.6 43 162-204 3-48 (201)
174 2dr3_A UPF0273 protein PH0284; 97.4 0.00063 2.2E-08 57.5 9.6 114 174-294 21-174 (247)
175 2ygr_A Uvrabc system protein A 97.4 0.0004 1.4E-08 69.8 9.3 62 244-306 868-938 (993)
176 2v9p_A Replication protein E1; 97.4 0.00013 4.3E-09 64.2 5.1 38 163-202 113-150 (305)
177 1ixz_A ATP-dependent metallopr 97.4 0.00031 1.1E-08 60.0 7.5 23 181-203 52-74 (254)
178 4f4c_A Multidrug resistance pr 97.4 0.00013 4.3E-09 76.8 5.5 130 165-297 1094-1280(1321)
179 3lw7_A Adenylate kinase relate 97.4 0.001 3.4E-08 52.9 9.6 20 179-198 2-21 (179)
180 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0013 4.4E-08 61.8 11.5 48 156-203 30-89 (499)
181 3tr0_A Guanylate kinase, GMP k 97.4 0.00011 3.7E-09 60.5 3.7 23 180-202 9-31 (205)
182 3cf2_A TER ATPase, transitiona 97.3 0.00085 2.9E-08 66.4 10.2 125 178-322 238-385 (806)
183 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00024 8.2E-09 62.5 5.4 68 179-268 124-193 (331)
184 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 59.7 3.0 25 179-203 2-26 (186)
185 1s96_A Guanylate kinase, GMP k 97.3 0.00018 6E-09 60.2 4.0 29 173-203 13-41 (219)
186 1ls1_A Signal recognition part 97.3 0.0022 7.6E-08 56.1 11.1 85 179-266 99-189 (295)
187 1kgd_A CASK, peripheral plasma 97.3 0.00017 5.9E-09 58.3 3.6 25 179-203 6-30 (180)
188 2ffh_A Protein (FFH); SRP54, s 97.2 0.0037 1.3E-07 57.4 12.8 28 178-205 98-125 (425)
189 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0011 3.8E-08 65.8 10.1 46 157-202 458-512 (758)
190 1j8m_F SRP54, signal recogniti 97.2 0.0049 1.7E-07 53.9 13.0 87 178-266 98-189 (297)
191 3kl4_A SRP54, signal recogniti 97.2 0.0038 1.3E-07 57.4 12.7 28 178-205 97-124 (433)
192 1lvg_A Guanylate kinase, GMP k 97.2 0.00016 5.4E-09 59.5 3.2 24 180-203 6-29 (198)
193 2yhs_A FTSY, cell division pro 97.2 0.0024 8.1E-08 59.5 11.3 28 178-205 293-320 (503)
194 1zp6_A Hypothetical protein AT 97.2 0.00017 5.7E-09 58.7 3.1 23 179-201 10-32 (191)
195 3t15_A Ribulose bisphosphate c 97.2 0.0022 7.5E-08 56.0 10.4 26 178-203 36-61 (293)
196 1qvr_A CLPB protein; coiled co 97.2 0.0012 4E-08 66.6 9.8 46 158-203 559-613 (854)
197 3asz_A Uridine kinase; cytidin 97.2 0.00024 8.1E-09 58.8 4.0 26 178-203 6-31 (211)
198 2xxa_A Signal recognition part 97.2 0.0065 2.2E-07 56.0 14.0 29 177-205 99-127 (433)
199 3vaa_A Shikimate kinase, SK; s 97.2 0.00027 9.4E-09 58.0 4.1 36 165-202 14-49 (199)
200 2obl_A ESCN; ATPase, hydrolase 97.2 0.0003 1E-08 63.0 4.6 40 162-204 58-97 (347)
201 4eun_A Thermoresistant glucoki 97.2 0.00028 9.4E-09 58.0 4.0 25 178-202 29-53 (200)
202 3dm5_A SRP54, signal recogniti 97.1 0.0042 1.4E-07 57.2 12.0 28 177-204 99-126 (443)
203 3aez_A Pantothenate kinase; tr 97.1 0.00058 2E-08 60.3 6.0 28 177-204 89-116 (312)
204 3uie_A Adenylyl-sulfate kinase 97.1 0.00044 1.5E-08 56.8 4.8 27 177-203 24-50 (200)
205 2bdt_A BH3686; alpha-beta prot 97.1 0.0003 1E-08 57.1 3.7 22 179-200 3-24 (189)
206 2i3b_A HCR-ntpase, human cance 97.1 0.00027 9.3E-09 57.6 3.4 24 180-203 3-26 (189)
207 1rj9_A FTSY, signal recognitio 97.1 0.00038 1.3E-08 61.2 4.3 28 178-205 102-129 (304)
208 3io5_A Recombination and repai 97.1 0.0045 1.5E-07 54.3 10.9 85 179-268 29-122 (333)
209 2b8t_A Thymidine kinase; deoxy 97.1 0.00013 4.4E-09 61.1 1.2 108 179-292 13-125 (223)
210 3tqc_A Pantothenate kinase; bi 97.1 0.0006 2E-08 60.3 5.5 44 160-203 70-117 (321)
211 1v5w_A DMC1, meiotic recombina 97.1 0.0039 1.3E-07 55.8 10.9 89 179-268 123-230 (343)
212 3b9q_A Chloroplast SRP recepto 97.1 0.00048 1.6E-08 60.5 4.8 27 179-205 101-127 (302)
213 3nwj_A ATSK2; P loop, shikimat 97.1 0.00041 1.4E-08 59.2 4.2 41 161-203 30-73 (250)
214 1kag_A SKI, shikimate kinase I 97.1 0.00028 9.7E-09 56.3 3.0 24 180-203 6-29 (173)
215 2qag_B Septin-6, protein NEDD5 97.1 0.00024 8.3E-09 65.2 2.9 40 161-201 26-65 (427)
216 3k1j_A LON protease, ATP-depen 97.0 0.00044 1.5E-08 66.9 4.7 48 154-203 38-85 (604)
217 2j41_A Guanylate kinase; GMP, 97.0 0.00038 1.3E-08 57.2 3.7 23 180-202 8-30 (207)
218 1odf_A YGR205W, hypothetical 3 97.0 0.00097 3.3E-08 58.2 6.4 29 176-204 29-57 (290)
219 3ice_A Transcription terminati 97.0 0.00079 2.7E-08 60.6 5.8 88 175-268 173-272 (422)
220 2z43_A DNA repair and recombin 97.0 0.0033 1.1E-07 55.7 10.0 88 180-268 109-214 (324)
221 3tau_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 57.6 3.5 25 179-203 9-33 (208)
222 1sq5_A Pantothenate kinase; P- 97.0 0.00084 2.9E-08 59.2 5.8 28 176-203 78-105 (308)
223 2gza_A Type IV secretion syste 97.0 0.00028 9.4E-09 63.8 2.7 121 167-295 166-289 (361)
224 1xp8_A RECA protein, recombina 97.0 0.004 1.4E-07 56.1 10.3 81 180-267 76-162 (366)
225 1sky_E F1-ATPase, F1-ATP synth 97.0 0.007 2.4E-07 56.0 12.0 91 175-268 150-256 (473)
226 1knq_A Gluconate kinase; ALFA/ 97.0 0.00052 1.8E-08 54.9 4.1 24 179-202 9-32 (175)
227 2c9o_A RUVB-like 1; hexameric 97.0 0.0011 3.6E-08 61.9 6.7 47 157-203 37-88 (456)
228 2qm8_A GTPase/ATPase; G protei 97.0 0.00043 1.5E-08 61.9 3.8 40 163-204 42-81 (337)
229 3lnc_A Guanylate kinase, GMP k 97.0 0.00016 5.4E-09 60.9 0.8 23 180-202 29-52 (231)
230 2dpy_A FLII, flagellum-specifi 97.0 0.00063 2.1E-08 63.0 4.8 40 162-204 144-183 (438)
231 3sop_A Neuronal-specific septi 96.9 0.00044 1.5E-08 59.7 3.4 25 180-204 4-28 (270)
232 2og2_A Putative signal recogni 96.9 0.00072 2.5E-08 60.8 4.8 26 179-204 158-183 (359)
233 2bbw_A Adenylate kinase 4, AK4 96.9 0.00054 1.8E-08 58.2 3.8 25 178-202 27-51 (246)
234 1u94_A RECA protein, recombina 96.9 0.0048 1.6E-07 55.4 10.0 81 180-267 65-151 (356)
235 3kb2_A SPBC2 prophage-derived 96.9 0.00063 2.2E-08 54.0 3.7 24 179-202 2-25 (173)
236 4a1f_A DNAB helicase, replicat 96.9 0.0048 1.7E-07 54.9 9.7 96 165-266 35-165 (338)
237 3bh0_A DNAB-like replicative h 96.9 0.0065 2.2E-07 53.6 10.5 60 165-230 57-116 (315)
238 1tq4_A IIGP1, interferon-induc 96.9 0.00098 3.3E-08 61.0 5.2 25 178-202 69-93 (413)
239 3ney_A 55 kDa erythrocyte memb 96.9 0.00064 2.2E-08 55.7 3.6 24 179-202 20-43 (197)
240 2r44_A Uncharacterized protein 96.9 0.00091 3.1E-08 59.4 4.9 44 157-202 27-70 (331)
241 1cke_A CK, MSSA, protein (cyti 96.8 0.00071 2.4E-08 56.5 3.8 24 179-202 6-29 (227)
242 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0013 4.6E-08 58.6 5.7 38 166-203 12-49 (359)
243 3t61_A Gluconokinase; PSI-biol 96.8 0.0006 2.1E-08 56.0 3.1 24 179-202 19-42 (202)
244 2f1r_A Molybdopterin-guanine d 96.8 0.0005 1.7E-08 55.1 2.5 27 179-205 3-29 (171)
245 1qhx_A CPT, protein (chloramph 96.8 0.00079 2.7E-08 53.9 3.6 24 179-202 4-27 (178)
246 2yvu_A Probable adenylyl-sulfa 96.8 0.001 3.6E-08 53.7 4.2 28 177-204 12-39 (186)
247 2r6a_A DNAB helicase, replicat 96.8 0.0064 2.2E-07 56.5 10.0 98 165-267 192-323 (454)
248 2if2_A Dephospho-COA kinase; a 96.8 0.00078 2.7E-08 55.3 3.4 22 179-200 2-23 (204)
249 2i1q_A DNA repair and recombin 96.8 0.0037 1.3E-07 55.3 8.0 88 179-267 99-214 (322)
250 2j37_W Signal recognition part 96.7 0.028 9.5E-07 52.8 14.2 28 177-204 100-127 (504)
251 2hf9_A Probable hydrogenase ni 96.7 0.0022 7.4E-08 53.4 5.9 40 164-203 24-63 (226)
252 1jjv_A Dephospho-COA kinase; P 96.7 0.00096 3.3E-08 54.9 3.6 22 179-200 3-24 (206)
253 2ze6_A Isopentenyl transferase 96.7 0.0012 4E-08 56.5 4.0 24 179-202 2-25 (253)
254 4e22_A Cytidylate kinase; P-lo 96.7 0.001 3.5E-08 56.8 3.7 24 179-202 28-51 (252)
255 1ly1_A Polynucleotide kinase; 96.7 0.0012 4E-08 52.9 3.7 22 179-200 3-24 (181)
256 2qor_A Guanylate kinase; phosp 96.7 0.00091 3.1E-08 55.1 3.0 24 179-202 13-36 (204)
257 1svm_A Large T antigen; AAA+ f 96.6 0.0015 5.1E-08 59.1 4.6 35 166-202 159-193 (377)
258 2wsm_A Hydrogenase expression/ 96.6 0.002 6.8E-08 53.4 5.1 42 162-203 14-55 (221)
259 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0015 5.1E-08 61.4 4.7 44 157-202 22-65 (500)
260 1nks_A Adenylate kinase; therm 96.6 0.0014 4.9E-08 52.9 4.1 25 179-203 2-26 (194)
261 1ex7_A Guanylate kinase; subst 96.6 0.0011 3.6E-08 53.9 3.1 23 180-202 3-25 (186)
262 1g8p_A Magnesium-chelatase 38 96.6 0.0014 4.8E-08 58.5 4.2 48 156-203 23-70 (350)
263 3trf_A Shikimate kinase, SK; a 96.6 0.0014 4.8E-08 52.8 3.8 24 179-202 6-29 (185)
264 3kta_A Chromosome segregation 96.6 0.0012 4E-08 53.2 3.3 23 180-202 28-50 (182)
265 1xjc_A MOBB protein homolog; s 96.6 0.0018 6.2E-08 51.6 4.2 27 178-204 4-30 (169)
266 1kht_A Adenylate kinase; phosp 96.6 0.0015 5.2E-08 52.7 3.9 25 179-203 4-28 (192)
267 2oap_1 GSPE-2, type II secreti 96.6 0.0013 4.5E-08 62.0 3.9 40 163-204 247-286 (511)
268 1ypw_A Transitional endoplasmi 96.6 0.00041 1.4E-08 69.3 0.4 47 157-203 477-536 (806)
269 2jaq_A Deoxyguanosine kinase; 96.6 0.0015 5.1E-08 53.4 3.8 24 180-203 2-25 (205)
270 2qt1_A Nicotinamide riboside k 96.6 0.0015 5.1E-08 53.8 3.8 25 178-202 21-45 (207)
271 1zu4_A FTSY; GTPase, signal re 96.6 0.011 3.8E-07 52.2 9.6 28 178-205 105-132 (320)
272 1via_A Shikimate kinase; struc 96.6 0.0013 4.3E-08 52.6 3.2 24 180-203 6-29 (175)
273 2rhm_A Putative kinase; P-loop 96.5 0.002 6.7E-08 52.2 4.3 25 178-202 5-29 (193)
274 1oix_A RAS-related protein RAB 96.5 0.0015 5.1E-08 53.0 3.4 24 179-202 30-53 (191)
275 3cm0_A Adenylate kinase; ATP-b 96.5 0.0019 6.5E-08 52.0 4.0 24 179-202 5-28 (186)
276 2ck3_D ATP synthase subunit be 96.5 0.023 7.8E-07 52.6 11.4 91 175-268 152-264 (482)
277 1uf9_A TT1252 protein; P-loop, 96.5 0.0019 6.6E-08 52.7 3.9 26 176-201 6-31 (203)
278 1gvn_B Zeta; postsegregational 96.5 0.0036 1.2E-07 54.5 5.7 26 177-202 32-57 (287)
279 2pez_A Bifunctional 3'-phospho 96.4 0.0041 1.4E-07 49.8 5.6 26 179-204 6-31 (179)
280 1np6_A Molybdopterin-guanine d 96.4 0.0026 8.9E-08 51.0 4.2 27 178-204 6-32 (174)
281 1p9r_A General secretion pathw 96.4 0.0036 1.2E-07 57.4 5.7 28 177-204 166-193 (418)
282 1uj2_A Uridine-cytidine kinase 96.4 0.0021 7.3E-08 54.7 3.9 28 176-203 20-47 (252)
283 2f9l_A RAB11B, member RAS onco 96.4 0.002 6.7E-08 52.6 3.5 23 179-201 6-28 (199)
284 3iij_A Coilin-interacting nucl 96.4 0.0018 6.1E-08 52.0 3.2 24 179-202 12-35 (180)
285 3cr8_A Sulfate adenylyltranfer 96.4 0.0034 1.2E-07 59.7 5.6 47 158-204 347-395 (552)
286 1lw7_A Transcriptional regulat 96.4 0.0018 6.1E-08 58.5 3.5 26 179-204 171-196 (365)
287 3hws_A ATP-dependent CLP prote 96.4 0.0036 1.2E-07 56.3 5.5 45 158-202 16-75 (363)
288 1tev_A UMP-CMP kinase; ploop, 96.4 0.0025 8.7E-08 51.5 4.1 24 179-202 4-27 (196)
289 1nij_A Hypothetical protein YJ 96.4 0.0018 6.1E-08 57.3 3.4 26 177-202 3-28 (318)
290 3tlx_A Adenylate kinase 2; str 96.4 0.0058 2E-07 51.7 6.4 27 176-202 27-53 (243)
291 1gtv_A TMK, thymidylate kinase 96.4 0.0012 4.1E-08 54.5 2.1 24 180-203 2-25 (214)
292 3euj_A Chromosome partition pr 96.4 0.0019 6.4E-08 60.3 3.5 26 179-204 30-55 (483)
293 1m7g_A Adenylylsulfate kinase; 96.4 0.0044 1.5E-07 51.2 5.4 26 178-203 25-50 (211)
294 1ukz_A Uridylate kinase; trans 96.4 0.0028 9.6E-08 51.9 4.2 27 176-202 13-39 (203)
295 1y63_A LMAJ004144AAA protein; 96.3 0.0025 8.7E-08 51.4 3.8 24 178-201 10-33 (184)
296 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0024 8.4E-08 49.7 3.5 24 179-202 24-47 (149)
297 1iy2_A ATP-dependent metallopr 96.3 0.0021 7.2E-08 55.6 3.4 23 181-203 76-98 (278)
298 2vp4_A Deoxynucleoside kinase; 96.3 0.0012 4.3E-08 55.4 1.9 23 179-201 21-43 (230)
299 2bwj_A Adenylate kinase 5; pho 96.3 0.0032 1.1E-07 51.2 4.2 25 179-203 13-37 (199)
300 2plr_A DTMP kinase, probable t 96.3 0.0029 1E-07 51.9 4.0 26 179-204 5-30 (213)
301 2rcn_A Probable GTPase ENGC; Y 96.3 0.0037 1.3E-07 56.0 4.9 35 166-203 206-240 (358)
302 2c95_A Adenylate kinase 1; tra 96.3 0.0026 9E-08 51.5 3.7 24 179-202 10-33 (196)
303 2p5t_B PEZT; postsegregational 96.3 0.0039 1.3E-07 53.1 4.9 26 177-202 31-56 (253)
304 1zuh_A Shikimate kinase; alpha 96.3 0.003 1E-07 50.0 3.8 26 178-203 7-32 (168)
305 2iyv_A Shikimate kinase, SK; t 96.3 0.0022 7.4E-08 51.7 3.0 24 180-203 4-27 (184)
306 2pbr_A DTMP kinase, thymidylat 96.3 0.003 1E-07 51.1 3.8 24 180-203 2-25 (195)
307 2pt5_A Shikimate kinase, SK; a 96.2 0.0031 1.1E-07 49.8 3.8 24 180-203 2-25 (168)
308 1e6c_A Shikimate kinase; phosp 96.2 0.0025 8.4E-08 50.6 3.2 25 179-203 3-27 (173)
309 2yv5_A YJEQ protein; hydrolase 96.2 0.0041 1.4E-07 54.6 4.9 33 167-203 157-189 (302)
310 1qf9_A UMP/CMP kinase, protein 96.2 0.0032 1.1E-07 50.8 4.0 24 179-202 7-30 (194)
311 2v3c_C SRP54, signal recogniti 96.2 0.004 1.4E-07 57.4 4.8 27 178-204 99-125 (432)
312 2z0h_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 50.9 3.9 25 180-204 2-26 (197)
313 3umf_A Adenylate kinase; rossm 96.2 0.0039 1.3E-07 51.9 4.1 27 177-203 28-54 (217)
314 3r20_A Cytidylate kinase; stru 96.2 0.0035 1.2E-07 52.7 3.8 24 179-202 10-33 (233)
315 3fb4_A Adenylate kinase; psych 96.2 0.0034 1.2E-07 51.9 3.8 23 180-202 2-24 (216)
316 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0036 1.2E-07 53.6 4.1 26 178-203 4-29 (260)
317 1g5t_A COB(I)alamin adenosyltr 96.2 0.018 6E-07 46.8 7.9 110 179-295 29-165 (196)
318 2cdn_A Adenylate kinase; phosp 96.2 0.0039 1.3E-07 51.0 4.1 25 178-202 20-44 (201)
319 2wwf_A Thymidilate kinase, put 96.1 0.0036 1.2E-07 51.5 3.8 31 179-210 11-41 (212)
320 2vli_A Antibiotic resistance p 96.1 0.0025 8.4E-08 51.1 2.6 24 179-202 6-29 (183)
321 2q6t_A DNAB replication FORK h 96.1 0.035 1.2E-06 51.3 10.8 61 165-230 189-249 (444)
322 4eaq_A DTMP kinase, thymidylat 96.1 0.0078 2.7E-07 50.5 5.7 27 178-204 26-52 (229)
323 1aky_A Adenylate kinase; ATP:A 96.1 0.0041 1.4E-07 51.6 4.0 24 179-202 5-28 (220)
324 1fx0_B ATP synthase beta chain 96.1 0.022 7.4E-07 52.9 9.0 88 180-268 167-277 (498)
325 1nn5_A Similar to deoxythymidy 96.1 0.0041 1.4E-07 51.2 3.8 26 179-204 10-35 (215)
326 1vht_A Dephospho-COA kinase; s 96.1 0.0039 1.3E-07 51.7 3.7 22 179-200 5-26 (218)
327 2grj_A Dephospho-COA kinase; T 96.0 0.0047 1.6E-07 50.3 3.9 25 177-201 11-35 (192)
328 3ake_A Cytidylate kinase; CMP 96.0 0.0046 1.6E-07 50.6 3.9 23 180-202 4-26 (208)
329 3dl0_A Adenylate kinase; phosp 96.0 0.0042 1.4E-07 51.3 3.6 23 180-202 2-24 (216)
330 1zak_A Adenylate kinase; ATP:A 96.0 0.0039 1.3E-07 51.9 3.4 25 179-203 6-30 (222)
331 2v54_A DTMP kinase, thymidylat 96.0 0.0043 1.5E-07 50.6 3.5 24 179-202 5-28 (204)
332 1um8_A ATP-dependent CLP prote 96.0 0.0077 2.6E-07 54.4 5.5 24 179-202 73-96 (376)
333 2wji_A Ferrous iron transport 96.0 0.0048 1.6E-07 48.6 3.6 23 179-201 4-26 (165)
334 2www_A Methylmalonic aciduria 96.0 0.013 4.3E-07 52.6 6.7 27 178-204 74-100 (349)
335 1zd8_A GTP:AMP phosphotransfer 96.0 0.0044 1.5E-07 51.7 3.5 24 179-202 8-31 (227)
336 3e1s_A Exodeoxyribonuclease V, 95.9 0.013 4.4E-07 56.1 7.1 26 179-204 205-230 (574)
337 2p67_A LAO/AO transport system 95.9 0.0047 1.6E-07 55.1 3.8 29 176-204 54-82 (341)
338 1u0l_A Probable GTPase ENGC; p 95.9 0.0071 2.4E-07 53.0 4.8 27 175-203 168-194 (301)
339 2qnr_A Septin-2, protein NEDD5 95.9 0.0035 1.2E-07 55.0 2.7 22 180-201 20-41 (301)
340 2f6r_A COA synthase, bifunctio 95.9 0.0052 1.8E-07 53.3 3.8 24 176-199 73-96 (281)
341 3sr0_A Adenylate kinase; phosp 95.9 0.0058 2E-07 50.4 3.8 24 180-203 2-25 (206)
342 2xb4_A Adenylate kinase; ATP-b 95.8 0.0062 2.1E-07 50.7 3.8 23 180-202 2-24 (223)
343 1a7j_A Phosphoribulokinase; tr 95.8 0.0036 1.2E-07 54.6 2.3 26 178-203 5-30 (290)
344 1g8f_A Sulfate adenylyltransfe 95.8 0.013 4.3E-07 55.1 6.2 47 157-203 372-420 (511)
345 3d3q_A TRNA delta(2)-isopenten 95.8 0.006 2.1E-07 54.2 3.7 25 179-203 8-32 (340)
346 2zej_A Dardarin, leucine-rich 95.8 0.0049 1.7E-07 49.5 2.9 22 180-201 4-25 (184)
347 3ld9_A DTMP kinase, thymidylat 95.8 0.021 7E-07 47.6 6.7 29 176-204 19-47 (223)
348 2wjg_A FEOB, ferrous iron tran 95.7 0.0053 1.8E-07 49.2 3.0 23 179-201 8-30 (188)
349 1e4v_A Adenylate kinase; trans 95.7 0.0067 2.3E-07 50.1 3.7 23 180-202 2-24 (214)
350 1q3t_A Cytidylate kinase; nucl 95.7 0.0077 2.6E-07 50.6 4.1 25 178-202 16-40 (236)
351 3qks_A DNA double-strand break 95.7 0.0065 2.2E-07 49.9 3.5 24 179-202 24-47 (203)
352 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.006 2.1E-07 55.0 3.5 50 256-306 302-357 (365)
353 3lv8_A DTMP kinase, thymidylat 95.7 0.023 7.9E-07 47.8 6.9 36 179-215 28-63 (236)
354 3p32_A Probable GTPase RV1496/ 95.7 0.018 6.1E-07 51.7 6.6 38 166-203 65-104 (355)
355 1pui_A ENGB, probable GTP-bind 95.7 0.0032 1.1E-07 51.6 1.5 25 178-202 26-50 (210)
356 4tmk_A Protein (thymidylate ki 95.7 0.026 8.8E-07 46.7 7.1 51 180-231 5-55 (213)
357 3qkt_A DNA double-strand break 95.7 0.0063 2.2E-07 54.3 3.5 57 249-306 264-326 (339)
358 3bgw_A DNAB-like replicative h 95.7 0.056 1.9E-06 50.0 10.0 50 165-218 186-235 (444)
359 3be4_A Adenylate kinase; malar 95.7 0.007 2.4E-07 50.1 3.6 24 179-202 6-29 (217)
360 2o5v_A DNA replication and rep 95.6 0.007 2.4E-07 54.4 3.5 22 179-200 27-48 (359)
361 3cmu_A Protein RECA, recombina 95.6 0.036 1.2E-06 60.0 9.4 82 179-267 1428-1515(2050)
362 2dyk_A GTP-binding protein; GT 95.6 0.0089 3.1E-07 46.3 3.8 23 179-201 2-24 (161)
363 3crm_A TRNA delta(2)-isopenten 95.6 0.0085 2.9E-07 52.8 3.9 24 179-202 6-29 (323)
364 1t9h_A YLOQ, probable GTPase E 95.6 0.0034 1.2E-07 55.1 1.4 23 180-202 175-197 (307)
365 1g41_A Heat shock protein HSLU 95.5 0.013 4.4E-07 54.0 5.0 46 158-203 16-75 (444)
366 2gj8_A MNME, tRNA modification 95.5 0.0065 2.2E-07 48.2 2.7 23 179-201 5-27 (172)
367 4edh_A DTMP kinase, thymidylat 95.5 0.036 1.2E-06 45.8 7.3 26 179-204 7-32 (213)
368 1jr3_D DNA polymerase III, del 95.5 0.18 6.1E-06 44.7 12.4 130 172-322 12-155 (343)
369 1ltq_A Polynucleotide kinase; 95.5 0.0092 3.2E-07 52.0 3.7 23 179-201 3-25 (301)
370 1qhl_A Protein (cell division 95.4 0.0011 3.9E-08 55.5 -2.1 26 180-205 29-54 (227)
371 1ak2_A Adenylate kinase isoenz 95.4 0.01 3.4E-07 49.8 3.8 25 179-203 17-41 (233)
372 2qag_C Septin-7; cell cycle, c 95.4 0.0054 1.9E-07 56.2 2.2 23 180-202 33-55 (418)
373 3exa_A TRNA delta(2)-isopenten 95.4 0.0097 3.3E-07 52.1 3.7 24 179-202 4-27 (322)
374 2ce2_X GTPase HRAS; signaling 95.4 0.0088 3E-07 46.4 3.2 23 180-202 5-27 (166)
375 1z2a_A RAS-related protein RAB 95.4 0.0094 3.2E-07 46.5 3.3 23 179-201 6-28 (168)
376 3llm_A ATP-dependent RNA helic 95.4 0.037 1.3E-06 46.3 7.1 33 167-201 67-99 (235)
377 3foz_A TRNA delta(2)-isopenten 95.4 0.011 3.8E-07 51.6 3.9 25 178-202 10-34 (316)
378 3cf2_A TER ATPase, transitiona 95.4 0.011 3.9E-07 58.5 4.4 91 158-268 478-581 (806)
379 1ega_A Protein (GTP-binding pr 95.3 0.0088 3E-07 52.4 3.2 24 178-201 8-31 (301)
380 3cmw_A Protein RECA, recombina 95.3 0.047 1.6E-06 58.2 9.1 82 180-268 734-821 (1706)
381 2ged_A SR-beta, signal recogni 95.3 0.01 3.4E-07 47.8 3.3 25 177-201 47-71 (193)
382 3fwy_A Light-independent proto 95.3 0.016 5.4E-07 51.1 4.8 29 176-204 46-74 (314)
383 1moz_A ARL1, ADP-ribosylation 95.3 0.011 3.8E-07 47.0 3.5 25 176-200 16-40 (183)
384 4gzl_A RAS-related C3 botulinu 95.3 0.012 4E-07 48.1 3.7 36 166-201 18-53 (204)
385 1q57_A DNA primase/helicase; d 95.3 0.076 2.6E-06 49.9 9.7 52 173-229 239-290 (503)
386 1fzq_A ADP-ribosylation factor 95.3 0.014 4.9E-07 46.5 4.0 26 176-201 14-39 (181)
387 1zj6_A ADP-ribosylation factor 95.2 0.024 8.4E-07 45.3 5.3 33 168-201 7-39 (187)
388 1u8z_A RAS-related protein RAL 95.2 0.012 4E-07 45.9 3.3 24 179-202 5-28 (168)
389 1w1w_A Structural maintenance 95.2 0.0098 3.4E-07 54.8 3.2 23 179-201 27-49 (430)
390 1e69_A Chromosome segregation 95.2 0.0082 2.8E-07 53.1 2.5 21 180-200 26-46 (322)
391 1kao_A RAP2A; GTP-binding prot 95.2 0.012 4.1E-07 45.7 3.3 23 180-202 5-27 (167)
392 1r8s_A ADP-ribosylation factor 95.2 0.013 4.5E-07 45.5 3.5 23 180-202 2-24 (164)
393 2ck3_A ATP synthase subunit al 95.2 0.067 2.3E-06 49.8 8.6 89 180-268 164-273 (510)
394 1c1y_A RAS-related protein RAP 95.2 0.013 4.3E-07 45.7 3.3 22 180-201 5-26 (167)
395 1z08_A RAS-related protein RAB 95.2 0.012 4.3E-07 45.9 3.3 24 179-202 7-30 (170)
396 1ek0_A Protein (GTP-binding pr 95.2 0.013 4.3E-07 45.8 3.3 23 180-202 5-27 (170)
397 3con_A GTPase NRAS; structural 95.1 0.013 4.3E-07 47.1 3.3 23 180-202 23-45 (190)
398 1z0j_A RAB-22, RAS-related pro 95.1 0.013 4.4E-07 45.8 3.3 23 180-202 8-30 (170)
399 2nzj_A GTP-binding protein REM 95.1 0.012 4.1E-07 46.3 3.1 23 179-201 5-27 (175)
400 3zvl_A Bifunctional polynucleo 95.1 0.0088 3E-07 54.9 2.6 27 176-202 256-282 (416)
401 1ky3_A GTP-binding protein YPT 95.1 0.013 4.4E-07 46.4 3.3 26 177-202 7-32 (182)
402 1tue_A Replication protein E1; 95.1 0.018 6.2E-07 47.1 4.0 40 164-203 43-83 (212)
403 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.014 4.6E-07 46.1 3.3 23 179-201 8-30 (177)
404 3ihw_A Centg3; RAS, centaurin, 95.1 0.013 4.6E-07 46.9 3.3 23 179-201 21-43 (184)
405 3v9p_A DTMP kinase, thymidylat 95.1 0.039 1.3E-06 46.1 6.2 26 179-204 26-51 (227)
406 1g16_A RAS-related protein SEC 95.1 0.013 4.6E-07 45.7 3.2 23 179-201 4-26 (170)
407 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.8E-07 51.7 3.6 24 179-202 41-64 (339)
408 1yrb_A ATP(GTP)binding protein 95.1 0.019 6.6E-07 48.7 4.4 26 178-203 14-39 (262)
409 3t1o_A Gliding protein MGLA; G 95.0 0.014 4.7E-07 46.9 3.3 24 179-202 15-38 (198)
410 2erx_A GTP-binding protein DI- 95.0 0.012 4E-07 46.1 2.8 22 180-201 5-26 (172)
411 1m2o_B GTP-binding protein SAR 95.0 0.013 4.6E-07 47.2 3.2 23 179-201 24-46 (190)
412 2qe7_A ATP synthase subunit al 95.0 0.095 3.2E-06 48.7 9.2 84 180-267 164-264 (502)
413 2fn4_A P23, RAS-related protei 95.0 0.014 4.7E-07 46.2 3.2 24 178-201 9-32 (181)
414 3szr_A Interferon-induced GTP- 95.0 0.0064 2.2E-07 58.7 1.4 26 178-203 45-70 (608)
415 1m7b_A RND3/RHOE small GTP-bin 95.0 0.014 4.8E-07 46.6 3.2 23 179-201 8-30 (184)
416 2gks_A Bifunctional SAT/APS ki 95.0 0.039 1.3E-06 52.4 6.7 48 157-204 349-398 (546)
417 2ocp_A DGK, deoxyguanosine kin 95.0 0.018 6.1E-07 48.5 4.0 24 179-202 3-26 (241)
418 1nrj_B SR-beta, signal recogni 95.0 0.017 5.9E-07 47.4 3.8 26 177-202 11-36 (218)
419 1r2q_A RAS-related protein RAB 95.0 0.015 5.2E-07 45.3 3.3 23 179-201 7-29 (170)
420 3q72_A GTP-binding protein RAD 95.0 0.013 4.4E-07 45.7 2.9 21 180-200 4-24 (166)
421 3q85_A GTP-binding protein REM 95.0 0.014 4.9E-07 45.6 3.1 21 180-200 4-24 (169)
422 3eph_A TRNA isopentenyltransfe 95.0 0.017 5.8E-07 52.4 3.9 25 179-203 3-27 (409)
423 1svi_A GTP-binding protein YSX 94.9 0.013 4.5E-07 47.1 2.9 25 177-201 22-46 (195)
424 2lkc_A Translation initiation 94.9 0.015 5.2E-07 45.9 3.2 24 178-201 8-31 (178)
425 1upt_A ARL1, ADP-ribosylation 94.9 0.016 5.4E-07 45.4 3.3 23 179-201 8-30 (171)
426 2qmh_A HPR kinase/phosphorylas 94.9 0.016 5.3E-07 47.3 3.2 23 179-201 35-57 (205)
427 3upu_A ATP-dependent DNA helic 94.9 0.049 1.7E-06 50.6 6.9 43 162-205 30-72 (459)
428 1f6b_A SAR1; gtpases, N-termin 94.9 0.023 7.8E-07 46.2 4.2 23 178-200 25-47 (198)
429 4dsu_A GTPase KRAS, isoform 2B 94.9 0.016 5.6E-07 46.1 3.3 23 180-202 6-28 (189)
430 2cjw_A GTP-binding protein GEM 94.9 0.018 6E-07 46.6 3.5 23 179-201 7-29 (192)
431 1z0f_A RAB14, member RAS oncog 94.9 0.017 5.8E-07 45.5 3.3 25 178-202 15-39 (179)
432 2oil_A CATX-8, RAS-related pro 94.9 0.017 5.7E-07 46.5 3.3 24 179-202 26-49 (193)
433 3bc1_A RAS-related protein RAB 94.9 0.017 5.7E-07 46.2 3.3 23 179-201 12-34 (195)
434 3hjn_A DTMP kinase, thymidylat 94.8 0.068 2.3E-06 43.5 7.0 50 180-231 2-51 (197)
435 3oaa_A ATP synthase subunit al 94.8 0.13 4.5E-06 47.7 9.5 85 180-268 164-265 (513)
436 3cmu_A Protein RECA, recombina 94.8 0.081 2.8E-06 57.3 9.2 95 164-267 369-471 (2050)
437 3lxx_A GTPase IMAP family memb 94.8 0.013 4.6E-07 49.1 2.8 26 177-202 28-53 (239)
438 2hxs_A RAB-26, RAS-related pro 94.8 0.015 5.1E-07 45.9 2.9 23 179-201 7-29 (178)
439 2y8e_A RAB-protein 6, GH09086P 94.8 0.017 5.8E-07 45.5 3.2 22 180-201 16-37 (179)
440 3end_A Light-independent proto 94.8 0.027 9.2E-07 49.2 4.8 30 175-204 38-67 (307)
441 2bme_A RAB4A, RAS-related prot 94.8 0.017 5.9E-07 46.0 3.2 24 179-202 11-34 (186)
442 1mky_A Probable GTP-binding pr 94.8 0.033 1.1E-06 51.4 5.5 43 160-202 151-204 (439)
443 3kkq_A RAS-related protein M-R 94.8 0.018 6.2E-07 45.7 3.3 24 178-201 18-41 (183)
444 3c5c_A RAS-like protein 12; GD 94.8 0.018 6.2E-07 46.2 3.3 24 179-202 22-45 (187)
445 2a9k_A RAS-related protein RAL 94.7 0.019 6.3E-07 45.7 3.3 24 179-202 19-42 (187)
446 3pqc_A Probable GTP-binding pr 94.7 0.014 4.9E-07 46.8 2.6 24 179-202 24-47 (195)
447 2cxx_A Probable GTP-binding pr 94.7 0.017 5.7E-07 46.2 3.0 22 180-201 3-24 (190)
448 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 0.018 6E-07 52.3 3.4 22 180-201 22-43 (392)
449 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.019 6.6E-07 45.6 3.3 22 180-201 7-28 (186)
450 2efe_B Small GTP-binding prote 94.7 0.019 6.5E-07 45.4 3.3 24 179-202 13-36 (181)
451 3vr4_D V-type sodium ATPase su 94.7 0.034 1.2E-06 51.1 5.2 89 180-268 153-259 (465)
452 2bov_A RAla, RAS-related prote 94.7 0.019 6.5E-07 46.6 3.3 25 178-202 14-38 (206)
453 2g6b_A RAS-related protein RAB 94.7 0.019 6.7E-07 45.3 3.3 24 179-202 11-34 (180)
454 3dz8_A RAS-related protein RAB 94.7 0.02 6.7E-07 46.1 3.4 24 179-202 24-47 (191)
455 1m8p_A Sulfate adenylyltransfe 94.7 0.036 1.2E-06 53.0 5.7 28 177-204 395-422 (573)
456 3clv_A RAB5 protein, putative; 94.7 0.019 6.7E-07 46.2 3.3 24 179-202 8-31 (208)
457 3k53_A Ferrous iron transport 94.7 0.017 5.9E-07 49.5 3.1 24 179-202 4-27 (271)
458 2atv_A RERG, RAS-like estrogen 94.7 0.025 8.5E-07 45.6 3.9 25 177-201 27-51 (196)
459 3bwd_D RAC-like GTP-binding pr 94.7 0.02 6.9E-07 45.3 3.3 23 179-201 9-31 (182)
460 3tw8_B RAS-related protein RAB 94.6 0.018 6.1E-07 45.5 2.9 24 178-201 9-32 (181)
461 2iwr_A Centaurin gamma 1; ANK 94.6 0.015 5.1E-07 46.0 2.5 23 179-201 8-30 (178)
462 1vg8_A RAS-related protein RAB 94.6 0.02 6.8E-07 46.5 3.3 25 178-202 8-32 (207)
463 3t5g_A GTP-binding protein RHE 94.6 0.02 6.9E-07 45.4 3.2 25 178-202 6-30 (181)
464 2ew1_A RAS-related protein RAB 94.6 0.02 6.9E-07 46.7 3.2 24 178-201 26-49 (201)
465 2fg5_A RAB-22B, RAS-related pr 94.6 0.02 6.9E-07 46.1 3.2 24 179-202 24-47 (192)
466 2r9v_A ATP synthase subunit al 94.6 0.051 1.7E-06 50.6 6.2 88 175-268 174-278 (515)
467 3cbq_A GTP-binding protein REM 94.6 0.015 5.3E-07 47.1 2.4 22 178-199 23-44 (195)
468 2gf9_A RAS-related protein RAB 94.6 0.022 7.4E-07 45.7 3.3 24 179-202 23-46 (189)
469 2orw_A Thymidine kinase; TMTK, 94.5 0.032 1.1E-06 44.9 4.2 24 180-203 5-28 (184)
470 3oes_A GTPase rhebl1; small GT 94.5 0.021 7.3E-07 46.3 3.2 26 177-202 23-48 (201)
471 2a5j_A RAS-related protein RAB 94.5 0.023 7.7E-07 45.7 3.3 22 180-201 23-44 (191)
472 2gf0_A GTP-binding protein DI- 94.5 0.022 7.4E-07 45.9 3.2 23 179-201 9-31 (199)
473 1zd9_A ADP-ribosylation factor 94.5 0.023 7.8E-07 45.6 3.3 24 179-202 23-46 (188)
474 1gwn_A RHO-related GTP-binding 94.5 0.022 7.5E-07 46.6 3.2 24 178-201 28-51 (205)
475 2h92_A Cytidylate kinase; ross 94.5 0.021 7.1E-07 47.1 3.1 24 179-202 4-27 (219)
476 3reg_A RHO-like small GTPase; 94.5 0.023 7.9E-07 45.7 3.3 24 179-202 24-47 (194)
477 3mfy_A V-type ATP synthase alp 94.5 0.032 1.1E-06 52.4 4.5 87 175-267 226-334 (588)
478 3tkl_A RAS-related protein RAB 94.5 0.024 8.1E-07 45.6 3.3 24 179-202 17-40 (196)
479 2fh5_B SR-beta, signal recogni 94.4 0.023 8E-07 46.5 3.3 24 179-202 8-31 (214)
480 1z06_A RAS-related protein RAB 94.4 0.024 8.3E-07 45.4 3.3 24 178-201 20-43 (189)
481 4b3f_X DNA-binding protein smu 94.4 0.17 6E-06 49.0 9.8 62 163-230 192-254 (646)
482 1ksh_A ARF-like protein 2; sma 94.4 0.028 9.5E-07 44.8 3.6 27 176-202 16-42 (186)
483 2bcg_Y Protein YP2, GTP-bindin 94.4 0.024 8.1E-07 46.1 3.2 24 179-202 9-32 (206)
484 3f9v_A Minichromosome maintena 94.4 0.015 5.1E-07 56.0 2.2 45 158-202 296-351 (595)
485 2p5s_A RAS and EF-hand domain 94.4 0.025 8.6E-07 45.8 3.3 25 177-201 27-51 (199)
486 3llu_A RAS-related GTP-binding 94.3 0.019 6.5E-07 46.4 2.5 23 179-201 21-43 (196)
487 1zbd_A Rabphilin-3A; G protein 94.3 0.021 7.3E-07 46.3 2.8 23 179-201 9-31 (203)
488 1x3s_A RAS-related protein RAB 94.3 0.026 9E-07 45.2 3.3 24 179-202 16-39 (195)
489 3iev_A GTP-binding protein ERA 94.3 0.023 7.7E-07 49.9 3.0 26 176-201 8-33 (308)
490 2b6h_A ADP-ribosylation factor 94.3 0.021 7.3E-07 46.0 2.6 25 176-200 27-51 (192)
491 2c61_A A-type ATP synthase non 94.2 0.036 1.2E-06 51.2 4.3 88 180-267 154-259 (469)
492 3auy_A DNA double-strand break 94.2 0.027 9.4E-07 50.7 3.5 22 179-200 26-47 (371)
493 2fv8_A H6, RHO-related GTP-bin 94.2 0.028 9.5E-07 45.9 3.2 23 179-201 26-48 (207)
494 3cph_A RAS-related protein SEC 94.2 0.029 1E-06 45.7 3.3 23 179-201 21-43 (213)
495 3tqf_A HPR(Ser) kinase; transf 94.2 0.029 9.7E-07 44.6 3.0 22 180-201 18-39 (181)
496 1p5z_B DCK, deoxycytidine kina 94.2 0.018 6.1E-07 49.2 2.0 26 177-202 23-48 (263)
497 2g3y_A GTP-binding protein GEM 94.1 0.028 9.5E-07 46.4 3.1 22 179-200 38-59 (211)
498 2o52_A RAS-related protein RAB 94.1 0.028 9.5E-07 45.6 3.0 24 178-201 25-48 (200)
499 2atx_A Small GTP binding prote 94.1 0.03 1E-06 45.0 3.2 23 179-201 19-41 (194)
500 2q3h_A RAS homolog gene family 94.0 0.03 1E-06 45.3 3.1 23 179-201 21-43 (201)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=3.6e-26 Score=220.07 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=137.3
Q ss_pred cchHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHH--HHHhhcCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 046889 160 KSRESTMKDIMEAMKDE---KVSIIGICGRGGIGKTTLVKEIQK--QAKEKKMFDEVAMAVVSQTP--SITKIQDEIAGW 232 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~ 232 (333)
+||+.+++.|..+|..+ +.++|+|+||||+||||||+.+|+ +.+...+|+.++|+++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999654 578999999999999999999998 56677899999999999885 788999999999
Q ss_pred hCCCCC-------CCCCHHHHHHHHHHHHccC-ceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcc-c-c
Q 046889 233 LGIKEL-------PDNDELVRASLLCKRIEKQ-RVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQ-A-H 302 (333)
Q Consensus 233 l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~-~-~ 302 (333)
++.... ...+...+...+.+.|.++ ||||||||+|+..++ .+ + ...||+||||||+..++..++ . .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 986421 2234566788999999996 999999999998765 22 1 126999999999999998875 3 2
Q ss_pred eEecCCCCHHHHHHHHHhhcccCC
Q 046889 303 IVDVRTLTEEESWRSAEGKRRVCL 326 (333)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~a~~~~ 326 (333)
.|.|++|+++++|+||.+++|+..
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~ 310 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMP 310 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC
T ss_pred EEECCCCCHHHHHHHHHHHhcCCC
Confidence 399999999999999999998764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.87 E-value=3.3e-22 Score=198.37 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=125.9
Q ss_pred ccchHHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 046889 159 FKSRESTMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTPSITKIQDEIAGWLGIK 236 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~~~ 236 (333)
.+||+.+++.|..+|.. +..++|+|+||+|+||||||+.++++.+...+|+. ++|+++++.++...++..++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999976 45679999999999999999999988777788986 89999999988888877777653211
Q ss_pred -----CCCC--C----CHHHHHHHHHHHH---ccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcccc
Q 046889 237 -----ELPD--N----DELVRASLLCKRI---EKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAH 302 (333)
Q Consensus 237 -----~~~~--~----~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~ 302 (333)
.... . +.+.....+.+.| .++|+||||||+|+...|..+. .||+||||||++.++..+...
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHhcCCC
Confidence 0011 1 1234455666665 5799999999999988887752 589999999999998655433
Q ss_pred -eEecC------CCCHHHHHHHHHhhc
Q 046889 303 -IVDVR------TLTEEESWRSAEGKR 322 (333)
Q Consensus 303 -~~~l~------~L~~~e~~~lf~~~a 322 (333)
.+.++ +|+++|+|+||+++.
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHc
Confidence 36666 899999999999983
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=6.7e-21 Score=199.49 Aligned_cols=172 Identities=19% Similarity=0.250 Sum_probs=134.7
Q ss_pred cccccccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHh-hcCC-CeEEEEEeCCCCC--HHHH
Q 046889 152 LSEGFYNFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKE-KKMF-DEVAMAVVSQTPS--ITKI 225 (333)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~--~~~~ 225 (333)
.|.....|+||+.+++.|...|. +++.++|+|+||||+||||||+.++++.+. ..+| +.+.|+.+++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45556779999999999999995 356789999999999999999999987643 3444 5677999988654 3344
Q ss_pred HHHHHHHhCCCC----CCCCCHHHHHHHHHHHHccC--ceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhc
Q 046889 226 QDEIAGWLGIKE----LPDNDELVRASLLCKRIEKQ--RVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 226 ~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~ 299 (333)
+..++..++... ....+...+...+...+.++ |+||||||+|+..+|..+ ..||+||||||++.++..+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhh
Confidence 666777776532 22345777888899999887 999999999998887775 3589999999999998543
Q ss_pred -ccce-EecCC-CCHHHHHHHHHhhcccCCCc
Q 046889 300 -QAHI-VDVRT-LTEEESWRSAEGKRRVCLER 328 (333)
Q Consensus 300 -~~~~-~~l~~-L~~~e~~~lf~~~a~~~~~~ 328 (333)
.... +.+.+ |+++|+++||...++...++
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~ 305 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKKED 305 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCChhh
Confidence 3333 88986 99999999999988655443
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=180.37 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=128.0
Q ss_pred ccccccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHHh-hcCCC-eEEEEEeCCCCCHHHHHH-
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAKE-KKMFD-EVAMAVVSQTPSITKIQD- 227 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f~-~~~wv~v~~~~~~~~~~~- 227 (333)
|.....|+||+.+++.|...+.. ++.++|+|+||+|+||||||..++++... ..+|. .+.|+++++.. ...++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence 44456799999999999999863 45789999999999999999999987654 56784 78999998763 333333
Q ss_pred --HHHHHhCCC----CCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhc
Q 046889 228 --EIAGWLGIK----ELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 228 --~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~ 299 (333)
.++..++.. .....+.......+...+.+ +++||||||+|+...+..+ ..|++||||||+..++..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhc
Confidence 334455531 22344567777888888877 7899999999988766654 3489999999999988765
Q ss_pred ccceEec---CCCCHHHHHHHHHhhcccC
Q 046889 300 QAHIVDV---RTLTEEESWRSAEGKRRVC 325 (333)
Q Consensus 300 ~~~~~~l---~~L~~~e~~~lf~~~a~~~ 325 (333)
....+.+ ++|+++|+++||.+.++..
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~ 302 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMK 302 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSC
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCC
Confidence 5444444 5899999999999998753
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.46 E-value=1.1e-13 Score=104.18 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchhHHhhhHHHHHHHHHHHHHHH
Q 046889 14 TEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNG-EAIKDEVQRWPDKVDEIIPTAEKFL 92 (333)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~l~~a~~~~-~~~~~~~~~wl~~vr~~a~~~ed~l 92 (333)
++.+.++|.+.+.+++.++.++++++++|++||+.|+++|. +++.+. ...++.++.|+.+||+++||+||+|
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~-------da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALI-------KIGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-------HHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666778899999999999999999999866554 455542 2468999999999999999999999
Q ss_pred hh
Q 046889 93 ED 94 (333)
Q Consensus 93 d~ 94 (333)
|+
T Consensus 76 D~ 77 (115)
T 3qfl_A 76 DK 77 (115)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=4.3e-12 Score=117.37 Aligned_cols=165 Identities=20% Similarity=0.198 Sum_probs=112.8
Q ss_pred ccccchHHHHHHHHHHh-hc------CCceEEEE--EcCCCCcHHHHHHHHHHHHHhh---cCCC-eEEEEEeCCCCCHH
Q 046889 157 YNFKSRESTMKDIMEAM-KD------EKVSIIGI--CGRGGIGKTTLVKEIQKQAKEK---KMFD-EVAMAVVSQTPSIT 223 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l-~~------~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~~ 223 (333)
..++||+.+++.|...+ .. +....+.| +|++|+|||||++.+++..... ..+. ..+|+.+.+..+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999998887 41 24456777 9999999999999999876532 1222 34577766777888
Q ss_pred HHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch--------hhhhcc---CCCC--C--CCcE
Q 046889 224 KIQDEIAGWLGIKEL-PDNDELVRASLLCKRIE--KQRVLVILDDLWVQI--------ELDRVG---IPYG--N--DGCK 285 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~---~~~~--~--~g~~ 285 (333)
.++..++..++.... ...+.......+.+.+. +++++|||||++... .+..+. .... . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 899999999876422 22345556666666665 578999999997632 222221 1111 2 3455
Q ss_pred EEEeeCChHHHh-----------hcccceEecCCCCHHHHHHHHHhhc
Q 046889 286 FLLTSRSRAACN-----------QMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 286 vivTTr~~~v~~-----------~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+|+||+...+.. .+... +.+.+|+.++.+++|.+++
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHH
Confidence 788887665322 12222 8999999999999997653
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.8e-12 Score=118.57 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=113.7
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
..++||+.+++.+..++.. +....+.|+|++|+|||||++.+++....... -...+|+......+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998863 34568999999999999999999988754321 234567766665666777888877
Q ss_pred HhCCCC-CCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch------hhhhccCCC---CCCCcEEEEeeCChHHHh--
Q 046889 232 WLGIKE-LPDNDELVRASLLCKRIEK--QRVLVILDDLWVQI------ELDRVGIPY---GNDGCKFLLTSRSRAACN-- 297 (333)
Q Consensus 232 ~l~~~~-~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~~~---~~~g~~vivTTr~~~v~~-- 297 (333)
.++... ....+.......+.+.+.. ++.+|||||++... .+..+.... ...+..+|+||+......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 776532 1223455556666666654 48999999997532 122221111 233667888998765322
Q ss_pred ------hcccceEecCCCCHHHHHHHHHhhc
Q 046889 298 ------QMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 298 ------~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
.+....+.+++++.++..+++.+.+
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 2222359999999999999999864
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3e-11 Score=110.59 Aligned_cols=163 Identities=16% Similarity=0.081 Sum_probs=114.9
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----C--CCeEEEEEeCCCC-CHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----M--FDEVAMAVVSQTP-SITKI 225 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~~~wv~v~~~~-~~~~~ 225 (333)
..++||+.+++.+..++.. +..+.+.|+|++|+|||||++.+++...... . ....+|+...... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999998877753 3456899999999999999999998764321 1 2355677766656 77888
Q ss_pred HHHHHHHh-CCC-CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-------hhhccCCCCCCCcEEEEeeCChHH-
Q 046889 226 QDEIAGWL-GIK-ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAA- 295 (333)
Q Consensus 226 ~~~i~~~l-~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v- 295 (333)
+..++..+ +.. .....+.......+...+..++.+|||||++.... +..+.... .+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD--ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS--SCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC--cceEEEEEECCCchH
Confidence 88888877 332 11223345667778888887777999999975421 22221111 57788999987632
Q ss_pred -------HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 296 -------CNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 296 -------~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
...++. .+.+++++.++..++|.+++
T Consensus 178 ~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 178 DYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHH
Confidence 222222 69999999999999999874
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=5.7e-11 Score=108.85 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=116.1
Q ss_pred ccccchHHHHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVS--IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
..++||+.+++.+..++.. +... .+.|+|++|+|||||++.+.+....... ...+++..+...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999888864 2333 8999999999999999999988753211 2455666667777788899999
Q ss_pred HHhCCCCC-CCCCHHHHHHHHHHHHc--cCceEEEEeCCCCc--hhhhhc---cCCCCC---CCcEEEEeeCChHHHhh-
Q 046889 231 GWLGIKEL-PDNDELVRASLLCKRIE--KQRVLVILDDLWVQ--IELDRV---GIPYGN---DGCKFLLTSRSRAACNQ- 298 (333)
Q Consensus 231 ~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l---~~~~~~---~g~~vivTTr~~~v~~~- 298 (333)
..++.... ...+.......+...+. +++.+|+|||++.. ..+..+ ...... .+..||++|++......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 98876421 22345566666666665 46789999999764 222222 111112 46778889888754322
Q ss_pred -------cccceEecCCCCHHHHHHHHHhhcc
Q 046889 299 -------MQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 299 -------~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+....+.+.+++.++..+++.+.+.
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 3333599999999999999988753
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.32 E-value=7e-11 Score=108.05 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=115.3
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---C-CCeEEEEEeCCCCCHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---M-FDEVAMAVVSQTPSITKIQDE 228 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-f~~~~wv~v~~~~~~~~~~~~ 228 (333)
..++||+.+++.+..++.. +....+.|+||+|+|||||++.+++...... . -...+|+......+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5789999999999998843 4456899999999999999999998764321 1 124567777777788888999
Q ss_pred HHHHhCCCC-CCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCchh-------hhhcc-CCC--C-CCCcEEEEeeCChH
Q 046889 229 IAGWLGIKE-LPDNDELVRASLLCKRIE--KQRVLVILDDLWVQIE-------LDRVG-IPY--G-NDGCKFLLTSRSRA 294 (333)
Q Consensus 229 i~~~l~~~~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~~l~-~~~--~-~~g~~vivTTr~~~ 294 (333)
++..++... ....+.......+...+. +++++|+|||++.... +..+. .+. . ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997642 223345666677777774 3578999999975421 11111 111 1 34667888887663
Q ss_pred --------HHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 295 --------ACNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 295 --------v~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+...+....+.+.+++.++..+++.+.+
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 2334444458999999999999999875
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.29 E-value=2.5e-11 Score=109.47 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=103.6
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC------CHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP------SITKIQDEI 229 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~i 229 (333)
...|+||+.+++.|...+..+ +++.|+|+.|+|||||++.+.+.. . .+|+.+.... +...+++.+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHH
Confidence 367999999999999998776 499999999999999999998764 1 5566654322 445566666
Q ss_pred HHHhCC-----------------C-CCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCchh---------hhhccCCC-C
Q 046889 230 AGWLGI-----------------K-ELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQIE---------LDRVGIPY-G 280 (333)
Q Consensus 230 ~~~l~~-----------------~-~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~~-~ 280 (333)
...+.. . ........+....+.+.... ++++|||||++.... +..+.... .
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 655432 0 00113445555556555543 489999999976432 11111100 1
Q ss_pred CCCcEEEEeeCChHHHhh----------cc---cceEecCCCCHHHHHHHHHhh
Q 046889 281 NDGCKFLLTSRSRAACNQ----------MQ---AHIVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~----------~~---~~~~~l~~L~~~e~~~lf~~~ 321 (333)
..+..+|+|++....... +. ...+.+.+|+.+|+.+++.+.
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 136789999887653221 11 124899999999999999864
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=8.3e-10 Score=92.61 Aligned_cols=152 Identities=10% Similarity=0.132 Sum_probs=93.5
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLG 234 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 234 (333)
....++|++..++.+..++..+....+.|+|+.|+|||+|++.+.........-.....+..+.......+...+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhc
Confidence 44678999999999999998776556999999999999999999887643211112223333333332222211111111
Q ss_pred CCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-----HhhcccceEe
Q 046889 235 IKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-----CNQMQAHIVD 305 (333)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-----~~~~~~~~~~ 305 (333)
... .-..++.+|++||++.. .....+. +.....++.+|+||+.... ..++ ..+.
T Consensus 95 ~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~--~~i~ 157 (226)
T 2chg_A 95 TAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC--AVFR 157 (226)
T ss_dssp SCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS--EEEE
T ss_pred ccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC--ceee
Confidence 100 00246789999999754 2222221 1112346778888876542 2222 2489
Q ss_pred cCCCCHHHHHHHHHhhcc
Q 046889 306 VRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 306 l~~L~~~e~~~lf~~~a~ 323 (333)
+.+++.++..+++.+.+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999999987753
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=3.2e-10 Score=102.43 Aligned_cols=157 Identities=12% Similarity=0.071 Sum_probs=98.0
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-----PSITKIQDEIA 230 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~ 230 (333)
...|+||+.+++.|.. +.. +++.|+|+.|+|||||++.+.+... . ..+|+.+... .+...+...+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 3579999999999999 765 4999999999999999999988753 1 2467776542 33444444443
Q ss_pred HHhC--------------C------CCC---------CCCCHHHHHHHHHHHHccCceEEEEeCCCCch-----hhhhcc
Q 046889 231 GWLG--------------I------KEL---------PDNDELVRASLLCKRIEKQRVLVILDDLWVQI-----ELDRVG 276 (333)
Q Consensus 231 ~~l~--------------~------~~~---------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~ 276 (333)
..+. . +.. ...........+.+.-. ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 3321 0 000 01223333333333222 48999999997632 222111
Q ss_pred CCC--CCCCcEEEEeeCChHHHhh----------cc---cceEecCCCCHHHHHHHHHhhc
Q 046889 277 IPY--GNDGCKFLLTSRSRAACNQ----------MQ---AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 277 ~~~--~~~g~~vivTTr~~~v~~~----------~~---~~~~~l~~L~~~e~~~lf~~~a 322 (333)
... ...+..+|+|++....... +. ...+.+.+|+.+|+.+++.+..
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 100 1136789999998754221 11 1348999999999999998753
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=3.1e-09 Score=90.24 Aligned_cols=163 Identities=12% Similarity=0.146 Sum_probs=91.8
Q ss_pred cccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW 232 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 232 (333)
.....++|++..++.+..++..+. .+.+.|+|++|+|||||++.+.+.......+... ....... ...+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhcc
Confidence 344678999999999999987654 3478999999999999999998876532211000 0000000 0000000
Q ss_pred hCCC----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHHH-hh
Q 046889 233 LGIK----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAAC-NQ 298 (333)
Q Consensus 233 l~~~----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v~-~~ 298 (333)
.... .............+.+.+ ..++.+||+||++.. ..+..+. +.....++.+|+||+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000000111111222222 246789999999653 2333331 11123467888888765421 11
Q ss_pred cc--cceEecCCCCHHHHHHHHHhhcc
Q 046889 299 MQ--AHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 299 ~~--~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+. ...+.+.+++.++..+++.+.+.
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 11 23499999999999999998764
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.93 E-value=2.6e-09 Score=90.42 Aligned_cols=135 Identities=13% Similarity=0.219 Sum_probs=82.9
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC--------eEEEEEeCCCC------CH-
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD--------EVAMAVVSQTP------SI- 222 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~--------~~~wv~v~~~~------~~- 222 (333)
+...+..++ +++|+|+||+|||||++.+.+..++.. .+. .....+++|.+ +.
T Consensus 23 vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (224)
T 2pcj_A 23 ISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTAL 100 (224)
T ss_dssp EEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHH
Confidence 333344566 999999999999999999987654321 000 01123344432 11
Q ss_pred -----------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------h
Q 046889 223 -----------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------D 273 (333)
Q Consensus 223 -----------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~ 273 (333)
......+++.+++...... + -+...-.+.+.|..++-+++||++.+..|. .
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~ 180 (224)
T 2pcj_A 101 ENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180 (224)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 1123456677776533222 2 344566788999999999999999877442 2
Q ss_pred hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+.......|..||++||+.+.+ .++++.+.|
T Consensus 181 ~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l 212 (224)
T 2pcj_A 181 DIFLKINEGGTSIVMVTHERELA-ELTHRTLEM 212 (224)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEE
T ss_pred HHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 22222222377899999999887 566665544
No 16
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.93 E-value=2.1e-09 Score=96.75 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=87.9
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe--------------EEEEEeCCCCC-------
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE--------------VAMAVVSQTPS------- 221 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~--------------~~wv~v~~~~~------- 221 (333)
++++...+..++ +++|+||+|+|||||++.+.+..++.. .|+. .-...+.|.+.
T Consensus 20 L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 20 LNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 333344445566 999999999999999999997754321 0100 00122333321
Q ss_pred -----------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889 222 -----------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------ 272 (333)
Q Consensus 222 -----------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------ 272 (333)
......++++.+++..... .+ -+.++-.|.+.|..++-+|+||++.+..|.
T Consensus 98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l 177 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1223456777777753222 22 345667799999999999999999877442
Q ss_pred hh-ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 DR-VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~~-l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.. +.......|..||++||+...+..++++.+.|
T Consensus 178 ~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl 212 (359)
T 3fvq_A 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVM 212 (359)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence 11 21111234888999999999988887777443
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.92 E-value=1.8e-09 Score=93.14 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH--
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT-- 223 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~-- 223 (333)
++.+...+..++ +++|+|+||+|||||++.+.+..++... +.. ....++++.+ ++.
T Consensus 31 l~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 31 LKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 334444445667 9999999999999999999876543210 000 0122334432 111
Q ss_pred ----------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhc
Q 046889 224 ----------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRV 275 (333)
Q Consensus 224 ----------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l 275 (333)
.....+++.+++... ...+ -+..+..+.+.|..++-+++||++.+..|. ..+
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 188 (256)
T 1vpl_A 109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188 (256)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 123345666666421 1222 345566788999999999999999877442 222
Q ss_pred cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.......|..||++||+.+.+..+++..+.|
T Consensus 189 l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l 219 (256)
T 1vpl_A 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALI 219 (256)
T ss_dssp HHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence 1222223778999999999888777766433
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.91 E-value=1.2e-09 Score=95.06 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=86.4
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC-------C
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP-------S 221 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~-------~ 221 (333)
++.+...+..++ +++|+||||+|||||++.+.+..++... ++. ....++.|.+ +
T Consensus 24 L~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 24 LKGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 333444445667 9999999999999999999876543210 000 0122334432 1
Q ss_pred H------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889 222 I------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------ 271 (333)
Q Consensus 222 ~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------ 271 (333)
+ .....++++.+++..... .+ -+.++..|.+.|..++-+|+||++.+..|
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~ 181 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 1 122345666777643222 22 34556778999999999999999987744
Q ss_pred hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... ..|..||++||+.+.+..++++.+.|
T Consensus 182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 222222222 23788999999999888777776444
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.91 E-value=6e-09 Score=90.39 Aligned_cols=144 Identities=12% Similarity=0.121 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------Ce----EEEEEeCCCC-----
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------DE----VAMAVVSQTP----- 220 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~~----~~wv~v~~~~----- 220 (333)
|....++.+...+..++ +++|+|+||+|||||++.+.+..++... | .. .....+.+.+
T Consensus 22 ~~~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 22 QQQALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp TTEEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred CCeeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 33334444555555677 9999999999999999999876543210 0 00 0011222221
Q ss_pred -----------------CHHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHcc------CceEEEEeCCCCchh
Q 046889 221 -----------------SITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEK------QRVLVILDDLWVQIE 271 (333)
Q Consensus 221 -----------------~~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~ 271 (333)
........+++.+++..... .+ -+..+..|.+.|.. ++-+|+||++.+..|
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD 179 (266)
T 4g1u_C 100 FSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179 (266)
T ss_dssp CBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCC
T ss_pred CCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCC
Confidence 11234556777777653322 22 34456678888887 999999999987754
Q ss_pred ------hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 ------LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ------~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... ..|..||++||+.+.+..++++.+.|
T Consensus 180 ~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 180 LYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 222222222 23568999999999888777776444
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.90 E-value=3.1e-09 Score=91.96 Aligned_cols=140 Identities=11% Similarity=0.220 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--------CC-----C----eEEEEEeCCCC------C
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--------MF-----D----EVAMAVVSQTP------S 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------~f-----~----~~~wv~v~~~~------~ 221 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+..++.. .. . .....++.|.+ +
T Consensus 39 vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 116 (263)
T 2olj_A 39 VLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT 116 (263)
T ss_dssp EEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence 4444444455666 999999999999999999987654321 00 0 00022334432 1
Q ss_pred HH-------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 222 IT-------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 222 ~~-------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
+. .....+++.+++..... .+ -+.++..+.+.|..++-+|+||++.+..|.
T Consensus 117 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 117 VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 11 11234566666642211 22 344566788899999999999999877542
Q ss_pred --hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+.......|..||++||+.+.+..++++.+.|
T Consensus 197 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 2222222223778999999999887777766444
No 21
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.9e-08 Score=87.13 Aligned_cols=166 Identities=9% Similarity=0.092 Sum_probs=103.4
Q ss_pred ccchHHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--eEEEEEeCCCCCHHHHHHHH
Q 046889 159 FKSRESTMKDIMEAMK----DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--EVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 159 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--~~~wv~v~~~~~~~~~~~~i 229 (333)
+.+|+++++.|...|. .+....+.|+|+.|+|||++++.+......... .. ..+.+......+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6789999998887764 356678999999999999999999988764321 11 23455555666778889999
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHH---ccCceEEEEeCCCCchh---hhhcc-CC-CCCCCcEEEEeeCChHH------
Q 046889 230 AGWLGIKELPDNDELVRASLLCKRI---EKQRVLVILDDLWVQIE---LDRVG-IP-YGNDGCKFLLTSRSRAA------ 295 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~---~~~l~-~~-~~~~g~~vivTTr~~~v------ 295 (333)
++++................+...+ ..++++++||++....+ +..+. .+ .......||.++...+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 9988543222222223333333333 34678999999876421 21111 11 12222334555544321
Q ss_pred ---HhhcccceEecCCCCHHHHHHHHHhhccc
Q 046889 296 ---CNQMQAHIVDVRTLTEEESWRSAEGKRRV 324 (333)
Q Consensus 296 ---~~~~~~~~~~l~~L~~~e~~~lf~~~a~~ 324 (333)
..++....+.+.+++.+|-.+++.+++-.
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 22344345999999999999999988743
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.90 E-value=2.9e-09 Score=95.83 Aligned_cols=140 Identities=11% Similarity=0.225 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCCC-----
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTPS----- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~~----- 221 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+..++... |+. .-...+.|.+.
T Consensus 43 aL~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 43 ALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred EEEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 3444555555677 9999999999999999999876543210 000 01223344331
Q ss_pred -H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 222 -I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 222 -~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
+ ......+++.+++... ...+ -+.++-.|.+.|..++-+|++|++.+..|
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 1 1224456777776422 1222 35567789999999999999999987754
Q ss_pred -hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 -LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 -~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... ..|..||++||+..++..++++.+.|
T Consensus 201 ~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 237 (366)
T ss_dssp HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 222222222 33888999999999988877776433
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.90 E-value=7.6e-09 Score=84.55 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=85.1
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----CCeEEEEEeCCCCCHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----FDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----f~~~~wv~v~~~~~~~~~~~~i 229 (333)
....++||++.++.+...+..+....+.|+|+.|+|||+|++.+......... ....+++.. ..+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM------GALV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH------HHHH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH------HHHh---
Confidence 34568999999999999998766667899999999999999999987653211 112233322 1111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHH--ccCceEEEEeCCCCch---------hhhhccCC-CCCCCcEEEEeeCChHHH-
Q 046889 230 AGWLGIKELPDNDELVRASLLCKRI--EKQRVLVILDDLWVQI---------ELDRVGIP-YGNDGCKFLLTSRSRAAC- 296 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~-~~~~g~~vivTTr~~~v~- 296 (333)
.... ...........+.+.+ ..++.+|+|||+.... .+..+... ....+..+|+||......
T Consensus 91 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 ----AGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 165 (195)
T ss_dssp ----TTTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHH
T ss_pred ----ccCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHH
Confidence 0000 0000111122222222 2467899999997542 11111111 122345677777765532
Q ss_pred -----hhcccc--eEecCCCCHHHHHHHH
Q 046889 297 -----NQMQAH--IVDVRTLTEEESWRSA 318 (333)
Q Consensus 297 -----~~~~~~--~~~l~~L~~~e~~~lf 318 (333)
..+..+ .+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111122 3889999988877654
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.88 E-value=1.8e-09 Score=93.00 Aligned_cols=133 Identities=15% Similarity=0.242 Sum_probs=83.3
Q ss_pred HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCC------H-----------------
Q 046889 170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPS------I----------------- 222 (333)
Q Consensus 170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~------~----------------- 222 (333)
...+..++ +++|+|+||+|||||++.+.+..++... ...+ .+++|.+. +
T Consensus 25 sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i--~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 100 (253)
T 2nq2_C 25 NFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI--GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK 100 (253)
T ss_dssp EEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCE--EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCC
T ss_pred EEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccE--EEEcCCCccCCCCCHHHHHHHhhhhhcccccC
Confidence 33344566 9999999999999999999887643211 0111 22233210 0
Q ss_pred -----HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCC-Cc
Q 046889 223 -----TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGND-GC 284 (333)
Q Consensus 223 -----~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~-g~ 284 (333)
......+++.+++.... ..+ -+...-.+.+.|..++-+++||++.+..|. ..+....... |.
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 180 (253)
T 2nq2_C 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180 (253)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 12244566667664221 122 344566788889999999999999877542 2222222223 77
Q ss_pred EEEEeeCChHHHhhcccceEec
Q 046889 285 KFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 285 ~vivTTr~~~v~~~~~~~~~~l 306 (333)
.||++||+.+.+..++++.+.+
T Consensus 181 tvi~vtHd~~~~~~~~d~v~~l 202 (253)
T 2nq2_C 181 TVVFTTHQPNQVVAIANKTLLL 202 (253)
T ss_dssp EEEEEESCHHHHHHHCSEEEEE
T ss_pred EEEEEecCHHHHHHhCCEEEEE
Confidence 8999999999887777766444
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.86 E-value=2.9e-09 Score=96.44 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=86.8
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCCC------H------
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTPS------I------ 222 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~~------~------ 222 (333)
.+...+..++ +++|+||+|+|||||++.+.+..++... |+ ..-...+.|.+. +
T Consensus 21 ~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~ 98 (381)
T 3rlf_A 21 DINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF 98 (381)
T ss_dssp EEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred eeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHH
Confidence 3333344566 9999999999999999999977643210 00 011223344331 1
Q ss_pred ------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCC
Q 046889 223 ------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIP 278 (333)
Q Consensus 223 ------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~ 278 (333)
.....++++.+++..... .+ -+.++-.|.+.|..++-+|+||++.+..|. ..+...
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 123455677777653222 22 345567788999999999999999877542 122122
Q ss_pred CC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 279 YG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 279 ~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.. ..|..||++||+...+..++++.+.|
T Consensus 179 l~~~~g~tii~vTHd~~ea~~~aDri~vl 207 (381)
T 3rlf_A 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (381)
T ss_dssp HHHHHCCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 22 23788999999999888887777433
No 26
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.4e-08 Score=90.43 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=93.2
Q ss_pred ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW 232 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 232 (333)
|.....++|++..++.+..++..+..+.+.|+|+.|+||||+++.+.............+++..+....... ++.++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 334567899999999999999887655599999999999999999998753211101122332222222211 1222221
Q ss_pred hCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhhccc--ceE
Q 046889 233 LGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQMQA--HIV 304 (333)
Q Consensus 233 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~~~~--~~~ 304 (333)
+.... ..+ .+++.++|+||++.. .....+. +.....++.+|+||+...- ...+.. ..+
T Consensus 96 ~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 96 FAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 11000 001 345889999999753 2222221 1122346788888876532 111111 248
Q ss_pred ecCCCCHHHHHHHHHhhc
Q 046889 305 DVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 305 ~l~~L~~~e~~~lf~~~a 322 (333)
.+.+++.++..+++.+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.85 E-value=2.9e-09 Score=91.02 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe-----EEEEEeCCCCC---------
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE-----VAMAVVSQTPS--------- 221 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~-----~~wv~v~~~~~--------- 221 (333)
+.+...+..++ +++|+|+||+|||||++.+.+..++.. .... ....+++|.+.
T Consensus 23 ~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 100 (240)
T 1ji0_A 23 KGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE 100 (240)
T ss_dssp EEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence 33333444566 999999999999999999987654321 0000 00222333211
Q ss_pred --------------HHHHHHHHHHHhC-CCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hh
Q 046889 222 --------------ITKIQDEIAGWLG-IKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DR 274 (333)
Q Consensus 222 --------------~~~~~~~i~~~l~-~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~ 274 (333)
....+..+++.++ +.. ....+ -+..+-.+.+.|..++-+++||++.+..|. ..
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 180 (240)
T 1ji0_A 101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180 (240)
T ss_dssp HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1122344555552 321 12223 344566788889999999999999877442 22
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.......|..||++||+.+.+..++++.+.+
T Consensus 181 ~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 21222224778999999998777666666444
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.84 E-value=3.8e-09 Score=91.52 Aligned_cols=139 Identities=14% Similarity=0.222 Sum_probs=84.1
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------------------EEEEEeC
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------------------VAMAVVS 217 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------------------~~wv~v~ 217 (333)
++.+...+..++ +++|+|+||+|||||++.+.+..++... |.. ....++.
T Consensus 22 l~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 22 LKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 334444455667 9999999999999999999876543210 000 0022334
Q ss_pred CCC------CHH-------------------HHHHHHHHHhCCCCC-CC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 218 QTP------SIT-------------------KIQDEIAGWLGIKEL-PD-----ND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 218 ~~~------~~~-------------------~~~~~i~~~l~~~~~-~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
|.+ ++. .....+++.+++... .. .+ -+..+..+.+.|..++-+|+||+
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 432 111 112345666665422 11 22 34456678888889999999999
Q ss_pred CCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..|. ..+.......|..||++||+.+.+..++++.+.|
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9877542 2222222223778999999999887777766444
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.83 E-value=5.3e-09 Score=89.81 Aligned_cols=132 Identities=18% Similarity=0.280 Sum_probs=79.7
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe------------EEEEEeCCCCC------H----------
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE------------VAMAVVSQTPS------I---------- 222 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~------------~~wv~v~~~~~------~---------- 222 (333)
+..++ +++|+|+||+|||||++.+.+..++.+. |.. ....++++.+. +
T Consensus 23 i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 23 VRAGE--ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EETTC--EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 34566 8999999999999999999876542110 000 00122333221 1
Q ss_pred ---HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCce-------EEEEeCCCCchh------hhhccCCCC
Q 046889 223 ---TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRV-------LVILDDLWVQIE------LDRVGIPYG 280 (333)
Q Consensus 223 ---~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~-------LlVlDdv~~~~~------~~~l~~~~~ 280 (333)
......+++.+++.... ..+ -+..+..+.+.|..++- +++||++.+..| +..+.....
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 22345667777764221 122 33445567777777777 999999987754 222222222
Q ss_pred CCCcEEEEeeCChHHHhhcccceEec
Q 046889 281 NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|..||++||+.+.+..++++.+.|
T Consensus 181 ~~g~tviivtHd~~~~~~~~d~v~~l 206 (249)
T 2qi9_C 181 QQGLAIVMSSHDLNHTLRHAHRAWLL 206 (249)
T ss_dssp HTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 23778999999999877666665433
No 30
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.83 E-value=2.8e-08 Score=84.30 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=77.4
Q ss_pred HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----HHH-----------HHHHHH
Q 046889 170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----ITK-----------IQDEIA 230 (333)
Q Consensus 170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~~~-----------~~~~i~ 230 (333)
...+..++ +++|+|++|+|||||++.+.+..++... +... ..+++|.+. +.+ .....+
T Consensus 28 sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~ 104 (229)
T 2pze_A 28 NFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI 104 (229)
T ss_dssp EEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC-EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHH
T ss_pred EEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE-EEEEecCCcccCCCHHHHhhccCCcChHHHHHHH
Confidence 33344566 9999999999999999999887643221 1100 123444321 111 112222
Q ss_pred HHhCCC------C----------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc-cCCCCCCCcEE
Q 046889 231 GWLGIK------E----------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV-GIPYGNDGCKF 286 (333)
Q Consensus 231 ~~l~~~------~----------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l-~~~~~~~g~~v 286 (333)
+.++.. . ....+ -+..+-.+.+.|..++-+++||++.+..| +..+ ..... .|..|
T Consensus 105 ~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tv 183 (229)
T 2pze_A 105 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTR 183 (229)
T ss_dssp HHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEE
T ss_pred HHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEE
Confidence 222221 0 11223 34456678889999999999999987644 2222 11222 37789
Q ss_pred EEeeCChHHHhhcccceEec
Q 046889 287 LLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 287 ivTTr~~~v~~~~~~~~~~l 306 (333)
|++||+...+.. +++.+.+
T Consensus 184 i~vtH~~~~~~~-~d~v~~l 202 (229)
T 2pze_A 184 ILVTSKMEHLKK-ADKILIL 202 (229)
T ss_dssp EEECCCHHHHHH-CSEEEEE
T ss_pred EEEcCChHHHHh-CCEEEEE
Confidence 999999987754 5555444
No 31
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.82 E-value=1.9e-08 Score=90.37 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=85.1
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE----------EEEEeCCCC------CHH---------
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV----------AMAVVSQTP------SIT--------- 223 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~----------~wv~v~~~~------~~~--------- 223 (333)
.+..++ +++|+||+|+|||||++.+.+..++... ++.. -...+.|.+ +..
T Consensus 22 ~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 22 KVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp EECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEcCCC--EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 344566 9999999999999999999977543210 1000 012334432 111
Q ss_pred ------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCC-CCCCc
Q 046889 224 ------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPY-GNDGC 284 (333)
Q Consensus 224 ------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~-~~~g~ 284 (333)
....++++.+++...... + -+.++-.|.+.|..++-+|+||++.+..|. ..+.... ...|.
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 179 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 223456777777533222 2 344566789999999999999999877442 2221222 22377
Q ss_pred EEEEeeCChHHHhhcccceEecC
Q 046889 285 KFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 285 ~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.||++||+...+..++++.+.|.
T Consensus 180 tii~vTHd~~~~~~~adri~vl~ 202 (348)
T 3d31_A 180 TVLHITHDQTEARIMADRIAVVM 202 (348)
T ss_dssp EEEEEESCHHHHHHHCSEEEEES
T ss_pred EEEEEeCCHHHHHHhCCEEEEEE
Confidence 89999999998887777765443
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.82 E-value=1.4e-08 Score=88.17 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--Hhh-c--CCC-------------eEEEEEeCCCCC----
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEK-K--MFD-------------EVAMAVVSQTPS---- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~-~--~f~-------------~~~wv~v~~~~~---- 221 (333)
..++.+...+..++ +++|+|+||+|||||++.+.+.. .+. + .+. ......+.+.+.
T Consensus 34 ~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 34 AILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 34444444455677 99999999999999999999862 111 1 000 000223444331
Q ss_pred --H-------------------------HHHHHHHHHHhCCC-CCC------CCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889 222 --I-------------------------TKIQDEIAGWLGIK-ELP------DND-ELVRASLLCKRIEKQRVLVILDDL 266 (333)
Q Consensus 222 --~-------------------------~~~~~~i~~~l~~~-~~~------~~~-~~~~~~~l~~~l~~k~~LlVlDdv 266 (333)
. .....++++.+++. ... ..+ -+..+..|.+.|..++-+|+||++
T Consensus 112 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp CBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 0 01233556666763 111 133 344566788899999999999999
Q ss_pred CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889 267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV 306 (333)
Q Consensus 267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l 306 (333)
.+..| +..+.......|..||++||+...+..+ +++.+.|
T Consensus 192 ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp TTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 87744 2222223334478899999999887764 5655433
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.82 E-value=6.3e-09 Score=93.93 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=85.0
Q ss_pred HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH--------
Q 046889 170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI-------- 222 (333)
Q Consensus 170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~-------- 222 (333)
...+..++ +++|+||+|+|||||++.+.+..++... ++. .-...+.|.+ ++
T Consensus 23 sl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 23 NLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp EEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred EEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 33344566 9999999999999999999977543210 000 0122334432 11
Q ss_pred ----------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC
Q 046889 223 ----------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG 280 (333)
Q Consensus 223 ----------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~ 280 (333)
.....++++.+++...... + -+.++-.|.+.|..++-+|+||++.+..|. ..+.....
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 101 ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 1123456777777533222 2 345566799999999999999999877442 22212221
Q ss_pred -CCCcEEEEeeCChHHHhhcccceEec
Q 046889 281 -NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 281 -~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|..+|++||+...+..++++.+.|
T Consensus 181 ~~~g~tvi~vTHd~~~a~~~adri~vl 207 (362)
T 2it1_A 181 KELGITTVYVTHDQAEALAMADRIAVI 207 (362)
T ss_dssp HHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 22778999999999887777776433
No 34
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.82 E-value=5.6e-09 Score=88.96 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=80.4
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC--------eEEEEEeCCCCC------HH--
Q 046889 171 EAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD--------EVAMAVVSQTPS------IT-- 223 (333)
Q Consensus 171 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~--------~~~wv~v~~~~~------~~-- 223 (333)
..+..++ +++|+||||+|||||++.+.+..++.. .+. ......+.|.+. +.
T Consensus 26 l~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en 103 (235)
T 3tif_A 26 LNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN 103 (235)
T ss_dssp EEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred EEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence 3344566 999999999999999999987654321 000 001223334321 11
Q ss_pred -------------------HHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----
Q 046889 224 -------------------KIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----- 272 (333)
Q Consensus 224 -------------------~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----- 272 (333)
.....++..+++... ...+ -+.+...+.+.|..++-+|+||++.+..|.
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 112345555665321 1122 344567788999999999999999877542
Q ss_pred -hhccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889 273 -DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 -~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+...... .|..||++||+.+++ .++++.+.|
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l 218 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYL 218 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 222222222 278899999999976 456665444
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.81 E-value=8e-09 Score=88.19 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH----------------H
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI----------------T 223 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~----------------~ 223 (333)
.+++|+|+||+|||||++.+.+..++... ++. ....++++.+ +. .
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 59999999999999999999976543210 000 0011222221 11 1
Q ss_pred HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCC-CCcEEEEee
Q 046889 224 KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGN-DGCKFLLTS 290 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~-~g~~vivTT 290 (333)
....++++.+++..... .+ .+..+..+.+.|..++-+++||++.+..|. ..+...... .|..||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 22345677777653322 22 344566788999999999999999877542 222222222 267799999
Q ss_pred CChHHHhhcccceEec
Q 046889 291 RSRAACNQMQAHIVDV 306 (333)
Q Consensus 291 r~~~v~~~~~~~~~~l 306 (333)
|+.+.+..++++.+.+
T Consensus 185 Hd~~~~~~~~d~i~~l 200 (240)
T 2onk_A 185 HDLIEAAMLADEVAVM 200 (240)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9998877777766444
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.80 E-value=4.5e-09 Score=94.57 Aligned_cols=140 Identities=11% Similarity=0.258 Sum_probs=87.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CH---
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SI--- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~--- 222 (333)
.++.+...+..++ +++|+||+|+|||||++.+.+..++... |+ ..-...+.|.+ ++
T Consensus 30 vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 107 (355)
T 1z47_A 30 SVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDN 107 (355)
T ss_dssp CEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHH
T ss_pred EEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHH
Confidence 3444444455677 9999999999999999999977543210 00 00112233321 11
Q ss_pred ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhc
Q 046889 223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRV 275 (333)
Q Consensus 223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l 275 (333)
.....++++.+++..... .+ -+.++-.|.+.|..++-+|+||++.+..|. ..+
T Consensus 108 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 187 (355)
T 1z47_A 108 VSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF 187 (355)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 122345677777643222 22 345567789999999999999999877542 222
Q ss_pred cCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 276 GIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 276 ~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..... ..|..||++||+...+..++++.+.|
T Consensus 188 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 219 (355)
T 1z47_A 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVL 219 (355)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 12222 22778999999999888877776443
No 37
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.79 E-value=5.4e-09 Score=94.26 Aligned_cols=133 Identities=22% Similarity=0.218 Sum_probs=84.0
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CH----------
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SI---------- 222 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~---------- 222 (333)
.+..++ +++|+||+|+|||||++.+.+..++... |+ ..-...+.|.+ ++
T Consensus 25 ~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 102 (359)
T 2yyz_A 25 EVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA 102 (359)
T ss_dssp EECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS
T ss_pred EEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 344566 9999999999999999999977543210 00 00112233332 11
Q ss_pred --------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC-C
Q 046889 223 --------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG-N 281 (333)
Q Consensus 223 --------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~-~ 281 (333)
.....++++.+++..... .+ -+.++-.|.+.|..++-+|+||++.+..|. ..+..... .
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 123456677777653222 22 345566799999999999999999877542 22211222 2
Q ss_pred CCcEEEEeeCChHHHhhcccceEec
Q 046889 282 DGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.|..+|++||+...+..++++.+.|
T Consensus 183 ~g~tvi~vTHd~~~~~~~adri~vl 207 (359)
T 2yyz_A 183 LGITSVYVTHDQAEAMTMASRIAVF 207 (359)
T ss_dssp HCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred cCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 2778999999999888777776444
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.78 E-value=1.2e-08 Score=88.66 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=81.7
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe---------EEEEEeCCCC-------CH---------
Q 046889 171 EAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE---------VAMAVVSQTP-------SI--------- 222 (333)
Q Consensus 171 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~---------~~wv~v~~~~-------~~--------- 222 (333)
..+..++ +++|+|+||+|||||++.+.+..++.. .+.. ....++++.+ +.
T Consensus 28 l~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 105 (266)
T 2yz2_A 28 LVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105 (266)
T ss_dssp EEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred EEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence 3344566 999999999999999999987654321 0000 0012233321 11
Q ss_pred --------HHHHHHHHHHhCCC--CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC
Q 046889 223 --------TKIQDEIAGWLGIK--ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG 280 (333)
Q Consensus 223 --------~~~~~~i~~~l~~~--~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~ 280 (333)
......+++.+++. .... .+ -+..+-.+.+.|..++-+++||++.+..|. ..+.....
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 106 NFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 12234566666664 2211 22 344566788899999999999999877542 22222222
Q ss_pred CCCcEEEEeeCChHHHhhcccceEec
Q 046889 281 NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..|..||++||+...+..++++.+.|
T Consensus 186 ~~g~tii~vtHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 186 TLGKTVILISHDIETVINHVDRVVVL 211 (266)
T ss_dssp HTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 23778999999988877666665433
No 39
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.78 E-value=1.1e-08 Score=88.33 Aligned_cols=140 Identities=15% Similarity=0.206 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe-----EEEEEeCCCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE-----VAMAVVSQTPS------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~-----~~wv~v~~~~~------- 221 (333)
.++.+...+..++ +++|+|+||+|||||++.+.+..++.. .... ....+++|.+.
T Consensus 22 vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 22 ALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred eEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence 3444444455677 999999999999999999986653211 0000 00122233211
Q ss_pred ------------------------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 222 ------------------------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 222 ------------------------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
.......+++.+++..... .+ -+.+...+.+.|..++-+|+||+
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE 179 (257)
T 1g6h_A 100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179 (257)
T ss_dssp HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0122345566666542211 22 34456678888889999999999
Q ss_pred CCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 266 LWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..|. ..+.......|..||++||+.+.+..++++.+.|
T Consensus 180 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 180 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9877542 2222222223778999999998877777766443
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.77 E-value=9.9e-09 Score=93.09 Aligned_cols=133 Identities=18% Similarity=0.253 Sum_probs=83.7
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe----------------EEEEEeCCCC------CH----
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE----------------VAMAVVSQTP------SI---- 222 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~----------------~~wv~v~~~~------~~---- 222 (333)
.+..++ +++|+|++|+|||||++.+.+..++.. .++. .-...+.|.+ ++
T Consensus 25 ~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 102 (372)
T 1g29_1 25 EVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102 (372)
T ss_dssp EEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred EEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHH
Confidence 344566 999999999999999999997754321 0110 0112333432 11
Q ss_pred --------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhcc
Q 046889 223 --------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVG 276 (333)
Q Consensus 223 --------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~ 276 (333)
.....++++.+++..... .+ -+.++-.|.+.|..++-+|+||++.+..|. ..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 103 AFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 112345677777643222 22 344566789999999999999999877442 2221
Q ss_pred CCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 277 IPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 277 ~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.... ..|..||++||+...+..++++.+.|
T Consensus 183 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 213 (372)
T 1g29_1 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM 213 (372)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 2222 22778999999999888777776444
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.77 E-value=3.9e-09 Score=88.47 Aligned_cols=134 Identities=18% Similarity=0.244 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCC------CH--------
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTP------SI-------- 222 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~------~~-------- 222 (333)
+.+...+..++ +++|+|+||+|||||++.+.+..++... +.. ....++++.+ ++
T Consensus 26 ~~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 103 (214)
T 1sgw_A 26 ERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA 103 (214)
T ss_dssp EEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 33344445566 8999999999999999999876543210 100 0122334432 11
Q ss_pred --------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCC
Q 046889 223 --------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGND 282 (333)
Q Consensus 223 --------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~ 282 (333)
......+++.+++... .. + -+..+-.+.+.|..++-+++||++.+..|. ..+.......
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 104 SLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp HHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 1223456667776433 22 2 344566788899999999999999876442 2222222223
Q ss_pred CcEEEEeeCChHHHhhcccce
Q 046889 283 GCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 283 g~~vivTTr~~~v~~~~~~~~ 303 (333)
|..||++||+...+..++...
T Consensus 183 g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 183 KGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp HSEEEEEESSCCTTSSEEEEG
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 678999999988766655544
No 42
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=2.4e-08 Score=89.00 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=90.2
Q ss_pred cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL 233 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 233 (333)
.....++|++..++.+..++..+..+.+.|+|+.|+||||+++.++........-.....+..+..... ..++..+.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 98 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI-NVIREKVK-- 98 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH-HTTHHHHH--
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch-HHHHHHHH--
Confidence 345678999999999999998877666999999999999999999987542110001122221111000 00111110
Q ss_pred CCCCCCCCCHHHHHHHHHHH--H-ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhhccc--ce
Q 046889 234 GIKELPDNDELVRASLLCKR--I-EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQMQA--HI 303 (333)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~~~~--~~ 303 (333)
..... + ..++.++|+||++.. .....+. +.....++++|+||....- ...+.. ..
T Consensus 99 ---------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 99 ---------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp ---------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred ---------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 11100 1 156789999999754 2222221 1112346788888876542 111111 24
Q ss_pred EecCCCCHHHHHHHHHhhc
Q 046889 304 VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~a 322 (333)
+.+.+++.++...++.+.+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHH
Confidence 8999999999999988765
No 43
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.76 E-value=6.5e-09 Score=93.70 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=85.4
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------CH-
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------SI- 222 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------~~- 222 (333)
.+...+..++ +++|+||+|+|||||++.+.+..++... ++. .-...+.|.+ +.
T Consensus 23 ~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~ 100 (353)
T 1oxx_K 23 NVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF 100 (353)
T ss_dssp EEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred ceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence 3333344566 9999999999999999999976543210 000 0112233322 11
Q ss_pred -----------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------h
Q 046889 223 -----------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------D 273 (333)
Q Consensus 223 -----------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~ 273 (333)
.....++++.+++..... .+ -+.++-.|.+.|..++-+|+||++.+..|. .
T Consensus 101 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~ 180 (353)
T 1oxx_K 101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180 (353)
T ss_dssp HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH
Confidence 123456677777653222 22 344566789999999999999999876442 2
Q ss_pred hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+..... ..|..||++||+.+.+..++++.+.|
T Consensus 181 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 214 (353)
T 1oxx_K 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL 214 (353)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2212221 23778999999999888777776443
No 44
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.76 E-value=6.5e-09 Score=94.17 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC-------------
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------------- 220 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------------- 220 (333)
+.+...+..++ +++|+||+|+|||||++.+.+..++... |+. .-...+.|.+
T Consensus 28 ~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 105 (372)
T 1v43_A 28 NKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIA 105 (372)
T ss_dssp EEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHH
T ss_pred eeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence 33444444566 9999999999999999999976543210 000 0011222221
Q ss_pred --------CH---HHHHHHHHHHhCCCCCCC------CCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccC
Q 046889 221 --------SI---TKIQDEIAGWLGIKELPD------NDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGI 277 (333)
Q Consensus 221 --------~~---~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~ 277 (333)
.. ......+++.+++..... +.-+.++-.|.+.|..++-+|+||++.+..|. ..+..
T Consensus 106 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 185 (372)
T 1v43_A 106 FPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 185 (372)
T ss_dssp TTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 01 123456677777642211 12345667788999999999999999877442 22212
Q ss_pred CCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 278 PYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 278 ~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
... ..|..+|++||+...+..++++.+.|
T Consensus 186 ~l~~~~g~tvi~vTHd~~~a~~~adri~vl 215 (372)
T 1v43_A 186 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 215 (372)
T ss_dssp HHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 222 22778999999999887777776444
No 45
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.75 E-value=1.4e-08 Score=87.27 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH--HHhhc---CCCe-------------EEEEEeCCCCC------HH-
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ--AKEKK---MFDE-------------VAMAVVSQTPS------IT- 223 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~--~~~~~---~f~~-------------~~wv~v~~~~~------~~- 223 (333)
+...+..++ +++|+|+||+|||||++.+.+. .++.. .++. .....++|.+. ..
T Consensus 22 vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (250)
T 2d2e_A 22 VNLVVPKGE--VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIAN 99 (250)
T ss_dssp EEEEEETTC--EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHH
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHH
Confidence 333344566 9999999999999999999985 22110 0000 00112233221 10
Q ss_pred --------------------HHHHHHHHHhCCC-C---C--CC-CC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889 224 --------------------KIQDEIAGWLGIK-E---L--PD-ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---- 271 (333)
Q Consensus 224 --------------------~~~~~i~~~l~~~-~---~--~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---- 271 (333)
.....+++.+++. . . .. .+ -+..+-.+.+.|..++-+++||++.+..|
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~ 179 (250)
T 2d2e_A 100 FLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDAL 179 (250)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHH
T ss_pred HHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHH
Confidence 1223456666662 1 1 11 22 34456678888889999999999987644
Q ss_pred --hhhccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889 272 --LDRVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV 306 (333)
Q Consensus 272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l 306 (333)
+..+.......|..||++||+...+..+ +++.+.|
T Consensus 180 ~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 180 KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp HHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 2222222233478899999999887766 3555433
No 46
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.71 E-value=1.3e-08 Score=87.19 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=77.4
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----------------C-CeEEEEEeCCCCC--------------
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----------------F-DEVAMAVVSQTPS-------------- 221 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----------------f-~~~~wv~v~~~~~-------------- 221 (333)
+..++ +++|+|+||+|||||++.+.+..++... + ..+.| +++.+.
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~--v~q~~~l~~~tv~enl~~~~ 100 (243)
T 1mv5_A 25 AQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF--VSQDSAIMAGTIRENLTYGL 100 (243)
T ss_dssp ECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE--ECCSSCCCCEEHHHHTTSCT
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE--EcCCCccccccHHHHHhhhc
Confidence 34555 9999999999999999999876543210 0 01112 222210
Q ss_pred ----HHHHHHHHHHHhCCCCC----------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889 222 ----ITKIQDEIAGWLGIKEL----------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR 274 (333)
Q Consensus 222 ----~~~~~~~i~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~ 274 (333)
.......+++.++.... ...+ -+..+-.+.+.|..++-+++||++.+..| +..
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~ 180 (243)
T 1mv5_A 101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180 (243)
T ss_dssp TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 12223455566665321 1223 34456678888889999999999987644 222
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..... .|..||++||+...+.. +++.+.|
T Consensus 181 ~l~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l 210 (243)
T 1mv5_A 181 ALDSLM-KGRTTLVIAHRLSTIVD-ADKIYFI 210 (243)
T ss_dssp HHHHHH-TTSEEEEECCSHHHHHH-CSEEEEE
T ss_pred HHHHhc-CCCEEEEEeCChHHHHh-CCEEEEE
Confidence 212222 37789999999987754 5555433
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.71 E-value=3.6e-08 Score=85.24 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------EEEE-EeCCCCC----H----------
Q 046889 170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------VAMA-VVSQTPS----I---------- 222 (333)
Q Consensus 170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------~~wv-~v~~~~~----~---------- 222 (333)
...+. ++ +++|+|+||+|||||++.+.+.. +... +.. .... +++|.+. .
T Consensus 25 sl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~ 100 (263)
T 2pjz_A 25 NLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEEL 100 (263)
T ss_dssp EEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHH
T ss_pred eEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhh
Confidence 33345 66 89999999999999999998765 4210 000 0112 3444331 1
Q ss_pred ----HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcE
Q 046889 223 ----TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCK 285 (333)
Q Consensus 223 ----~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~ 285 (333)
......+++.+++. .... .+ -+..+-.+.+.|..++-+++||++.+..|. ..+...... .
T Consensus 101 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---t 177 (263)
T 2pjz_A 101 KGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---E 177 (263)
T ss_dssp TCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---E
T ss_pred cchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---c
Confidence 11234566777764 2211 22 344566788999999999999999877542 222122222 7
Q ss_pred EEEeeCChHHHhhccc-ceEecC
Q 046889 286 FLLTSRSRAACNQMQA-HIVDVR 307 (333)
Q Consensus 286 vivTTr~~~v~~~~~~-~~~~l~ 307 (333)
||++||+.+.+..+++ +.+.++
T Consensus 178 viivtHd~~~~~~~~d~~i~~l~ 200 (263)
T 2pjz_A 178 GILVTHELDMLNLYKEYKAYFLV 200 (263)
T ss_dssp EEEEESCGGGGGGCTTSEEEEEE
T ss_pred EEEEEcCHHHHHHhcCceEEEEE
Confidence 9999999988777777 665443
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.68 E-value=8.2e-08 Score=84.18 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=75.9
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCeEEEEEeCCCCC-----HHHH----------HHHHHHHhC
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDEVAMAVVSQTPS-----ITKI----------QDEIAGWLG 234 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~~-----~~~~----------~~~i~~~l~ 234 (333)
+..++ +++|+|++|+|||||++.+.+..++.. .|... ..+++|.+. ..+. ....+..++
T Consensus 61 i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~-i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~ 137 (290)
T 2bbs_A 61 IERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137 (290)
T ss_dssp ECTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC-EEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE-EEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhC
Confidence 33556 999999999999999999987764321 11111 223444321 1111 111222222
Q ss_pred CC------C----------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc-cCCCCCCCcEEEEee
Q 046889 235 IK------E----------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV-GIPYGNDGCKFLLTS 290 (333)
Q Consensus 235 ~~------~----------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l-~~~~~~~g~~vivTT 290 (333)
.. . ....+ .+..+..+.+.|..++-+++||++.+..| +..+ ..... .|..||++|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivt 216 (290)
T 2bbs_A 138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVT 216 (290)
T ss_dssp CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEEC
T ss_pred hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence 21 0 01233 34456678889999999999999987644 2222 11222 377899999
Q ss_pred CChHHHhhcccceEec
Q 046889 291 RSRAACNQMQAHIVDV 306 (333)
Q Consensus 291 r~~~v~~~~~~~~~~l 306 (333)
|+...+.. ++..+.|
T Consensus 217 Hd~~~~~~-~d~i~~l 231 (290)
T 2bbs_A 217 SKMEHLKK-ADKILIL 231 (290)
T ss_dssp CCHHHHHH-SSEEEEE
T ss_pred cCHHHHHc-CCEEEEE
Confidence 99987754 5555433
No 49
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.67 E-value=3.2e-08 Score=84.84 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=79.0
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC-----H-----
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS-----I----- 222 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~-----~----- 222 (333)
.+...+..++ +++|+|++|+|||||++.+.+..++.. .... ....+++|.+. +
T Consensus 27 ~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 104 (247)
T 2ff7_A 27 NINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS 104 (247)
T ss_dssp EEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHh
Confidence 3333445667 999999999999999999987654321 0000 01223344321 1
Q ss_pred -------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889 223 -------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L 272 (333)
Q Consensus 223 -------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~ 272 (333)
......+++.+++. .....+ -+..+..+.+.|..++-+++||++.+..| +
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i 184 (247)
T 2ff7_A 105 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184 (247)
T ss_dssp TTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11122333333331 012233 34556678889999999999999987744 2
Q ss_pred hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+..... .|..||++||+...+.. ++..+.|
T Consensus 185 ~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l 216 (247)
T 2ff7_A 185 MRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVM 216 (247)
T ss_dssp HHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred HHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 22212222 37789999999987754 5555443
No 50
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.67 E-value=9e-08 Score=77.85 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 046889 162 RESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL 238 (333)
Q Consensus 162 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 238 (333)
....++.+..++.+ .....+.|+|++|+|||||++.+++.......+.. .++ +..++...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-YFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-CEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-EEE------EHHHHHHHHHHHhcCchH
Confidence 34455555554432 22348999999999999999999998864333322 222 234444444433322111
Q ss_pred CCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hh-----hhhccCCCCCCCcEEEEeeCCh
Q 046889 239 PDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IE-----LDRVGIPYGNDGCKFLLTSRSR 293 (333)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-----~~~l~~~~~~~g~~vivTTr~~ 293 (333)
. .+.+.+. +..+|||||++.. .. +..+.......|..+|+||+..
T Consensus 92 ~---------~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T---------KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S---------HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H---------HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 1222222 5679999999742 22 2222111123477899999864
No 51
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.67 E-value=7.5e-08 Score=82.04 Aligned_cols=130 Identities=13% Similarity=0.115 Sum_probs=75.5
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----HH-----------HHHHHHHHH-
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----IT-----------KIQDEIAGW- 232 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~~-----------~~~~~i~~~- 232 (333)
+..++ +++|+|++|+|||||++.+.+..++... ++.. ..+++|.+. +. .....+++.
T Consensus 28 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~-i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 104 (237)
T 2cbz_A 28 IPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS-VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC 104 (237)
T ss_dssp ECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC-EEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-EEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence 44566 9999999999999999999877643211 1100 123344321 00 111222222
Q ss_pred -----hCCC----------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccC--CCCCCCcEEEE
Q 046889 233 -----LGIK----------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGI--PYGNDGCKFLL 288 (333)
Q Consensus 233 -----l~~~----------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~--~~~~~g~~viv 288 (333)
++.. .....+ -+..+-.+.+.|..++-+++||++.+..|. ..+.. .....|..||+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii 184 (237)
T 2cbz_A 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184 (237)
T ss_dssp TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 2210 111223 344566788888999999999999877442 22221 11123788999
Q ss_pred eeCChHHHhhcccceEec
Q 046889 289 TSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 289 TTr~~~v~~~~~~~~~~l 306 (333)
+||+...+. .++..+.|
T Consensus 185 vtH~~~~~~-~~d~v~~l 201 (237)
T 2cbz_A 185 VTHSMSYLP-QVDVIIVM 201 (237)
T ss_dssp ECSCSTTGG-GSSEEEEE
T ss_pred EecChHHHH-hCCEEEEE
Confidence 999988765 35555444
No 52
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.67 E-value=8.7e-09 Score=89.98 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--------CCC-----------eEEEEEeCCC--
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--------MFD-----------EVAMAVVSQT-- 219 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------~f~-----------~~~wv~v~~~-- 219 (333)
|....++.+...+..++ +++|+|+||+|||||++.+.+..++.. ... .+.++ +|.
T Consensus 32 ~~~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v--~Q~~~ 107 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFV--SHSLL 107 (279)
T ss_dssp TTEEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEE--CHHHH
T ss_pred CCEEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEE--EcCcc
Confidence 43334445555555677 999999999999999999987654321 000 01122 111
Q ss_pred --C----CH----------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889 220 --P----SI----------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDD 265 (333)
Q Consensus 220 --~----~~----------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd 265 (333)
+ ++ ......+++.+++..... .+ -+..+..+.+.|..++-+|+||+
T Consensus 108 ~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE 187 (279)
T 2ihy_A 108 EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187 (279)
T ss_dssp TTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 11 112345566666642211 22 34456678888889999999999
Q ss_pred CCCchhh------hhccCCCCCCCcEE--EEeeCChHHHhhcccceEec
Q 046889 266 LWVQIEL------DRVGIPYGNDGCKF--LLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 266 v~~~~~~------~~l~~~~~~~g~~v--ivTTr~~~v~~~~~~~~~~l 306 (333)
+.+..|. ..+.......|..| |++||+.+.+..++++.+.|
T Consensus 188 Pts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l 236 (279)
T 2ihy_A 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL 236 (279)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEE
T ss_pred CccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEE
Confidence 9877442 22212222226668 99999998877666666433
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.65 E-value=6.2e-08 Score=93.51 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=83.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CC-eEEEEEeCCCC------CHHH--------------HHHHHHHH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FD-EVAMAVVSQTP------SITK--------------IQDEIAGW 232 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~------~~~~--------------~~~~i~~~ 232 (333)
.++ +++|+|+||+|||||++.+.+..++... .. .....+++|.. ++.+ ....+++.
T Consensus 381 ~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 381 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 355 9999999999999999999987654321 10 11123344432 1111 12345666
Q ss_pred hCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhc
Q 046889 233 LGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 233 l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~ 299 (333)
+++..... .+ -+.....|.+.|..++-+|+||++.+..|... +...+. ..|..||++||+...+..+
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 66643222 22 34556678899999999999999998755332 212221 2367899999999998888
Q ss_pred ccceEec
Q 046889 300 QAHIVDV 306 (333)
Q Consensus 300 ~~~~~~l 306 (333)
+++.+.|
T Consensus 539 adrv~vl 545 (607)
T 3bk7_A 539 SDRLIVF 545 (607)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7777444
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.1e-07 Score=91.73 Aligned_cols=131 Identities=10% Similarity=0.140 Sum_probs=83.3
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-------------CCe--------------EEEEEeCCCC-----
Q 046889 174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-------------FDE--------------VAMAVVSQTP----- 220 (333)
Q Consensus 174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-------------f~~--------------~~wv~v~~~~----- 220 (333)
..|+ +++|+|+||+|||||++.+.+..++.. . |.. ...+...+..
T Consensus 101 ~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 101 RPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 3466 999999999999999999987643321 1 100 0000111110
Q ss_pred ------------------CHHHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889 221 ------------------SITKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---- 272 (333)
Q Consensus 221 ------------------~~~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---- 272 (333)
........+++.+++.. ....+ .+.+.-.|.+.|..++-+++||++.+..+.
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~ 258 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL 258 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence 01134556777887752 22233 345566788999999999999999877542
Q ss_pred --hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
..+...+...|..||++||+...+..+++..+.|
T Consensus 259 ~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 259 NAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp HHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2222233344778999999999988887777444
No 55
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=3.1e-07 Score=82.88 Aligned_cols=163 Identities=10% Similarity=0.085 Sum_probs=88.4
Q ss_pred ccccccccchHHHHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHHHHH-hhcC---CCeE----------------
Q 046889 153 SEGFYNFKSRESTMKDIMEAM-KDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKKM---FDEV---------------- 211 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~---f~~~---------------- 211 (333)
|.....++|++..++.+..++ ..++...+.|+||+|+|||||++.+.+... .... ++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 344567899999999999988 666544599999999999999999988532 1110 0000
Q ss_pred --EEEEeCCC-CC--HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-----hhhhccCCCCC
Q 046889 212 --AMAVVSQT-PS--ITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-----ELDRVGIPYGN 281 (333)
Q Consensus 212 --~wv~v~~~-~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~~~~~~ 281 (333)
.++.+... .. .....++++..+....... ... .+ ..+..++.+++||++.... .+... +....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~-le~~~ 162 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRT-MEKYS 162 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHH-HHHST
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHH-HHhhc
Confidence 01111110 00 0011223333322110000 000 00 0034477899999997641 12222 11122
Q ss_pred CCcEEEEeeCChHH-Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889 282 DGCKFLLTSRSRAA-CNQMQA--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 282 ~g~~vivTTr~~~v-~~~~~~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
.++.+|++||+..- ...+.. ..+.+.+++.++....+.+.+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 36789999987542 111222 338999999999999988765
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.63 E-value=3.5e-08 Score=94.14 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-----------CCe--------------EEEEEeCCCC
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-----------FDE--------------VAMAVVSQTP 220 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-----------f~~--------------~~wv~v~~~~ 220 (333)
..+. .+..++ +++|+|+||+|||||++.+.+...+.. . +.. .....+.+..
T Consensus 39 ~~vs-~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 39 YRLP-VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp ECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred cCcC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 3344 455677 999999999999999999987543211 0 100 0001112211
Q ss_pred ---------CHHH---------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889 221 ---------SITK---------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--- 273 (333)
Q Consensus 221 ---------~~~~---------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--- 273 (333)
+..+ ....+++.+++..... .+ -+.....|.+.|..++-+|+||++.+..|..
T Consensus 116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~ 195 (538)
T 1yqt_A 116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL 195 (538)
T ss_dssp GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 1111 2346777888753222 22 3456678999999999999999999875522
Q ss_pred ---hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...+...|..||++||+...+..++++.+.+
T Consensus 196 ~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 196 NAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 221222224778999999999888777776443
No 57
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.63 E-value=1.4e-07 Score=82.04 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC-----H--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS-----I-- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~-----~-- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+..++.. .+.. ....+++|.+. +
T Consensus 34 vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 34 VLQGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp CEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred eeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence 3444444455666 999999999999999999987654321 0000 00123333321 1
Q ss_pred ------------HHH--------HHHHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889 223 ------------TKI--------QDEIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE--- 271 (333)
Q Consensus 223 ------------~~~--------~~~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 271 (333)
..+ +..++..+ ++. .....+ -+..+..|.+.|..++-+|+||++.+..|
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 191 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 110 11223333 221 111223 34456678889999999999999987744
Q ss_pred ---hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 ---LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 ---~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..... ..|..||++||+...+.. ++..+.|
T Consensus 192 ~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l 229 (271)
T 2ixe_A 192 QLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFL 229 (271)
T ss_dssp HHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 222222222 237889999999988764 5555444
No 58
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.61 E-value=5e-07 Score=84.12 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ 257 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 257 (333)
...+.|+|++|+|||||++.+++.......-...+++.. ..+...+...+... . ...+...+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----C----HHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----c----HHHHHHHhcCC
Confidence 457899999999999999999988753311112333332 23344444443321 1 12234444446
Q ss_pred ceEEEEeCCCCchh-------hhhccCCCCCCCcEEEEeeCChH---------HHhhcccc-eEecCCCCHHHHHHHHHh
Q 046889 258 RVLVILDDLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAH-IVDVRTLTEEESWRSAEG 320 (333)
Q Consensus 258 ~~LlVlDdv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~-~~~l~~L~~~e~~~lf~~ 320 (333)
..+|+|||+..... +..+.......|..||+||++.. +..++... .+.+.+++.++...++.+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~ 274 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARK 274 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 78999999964421 11111111344778999998732 23334332 388999999999999988
Q ss_pred hc
Q 046889 321 KR 322 (333)
Q Consensus 321 ~a 322 (333)
.+
T Consensus 275 ~~ 276 (440)
T 2z4s_A 275 ML 276 (440)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.61 E-value=2.8e-08 Score=94.58 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=79.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC------CHHHHH---------------HHHHHHhCC
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP------SITKIQ---------------DEIAGWLGI 235 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~------~~~~~~---------------~~i~~~l~~ 235 (333)
+++|+|+||+|||||++.+++..++... +.......+++.. ++.+.+ ..+++.+++
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL 375 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence 8999999999999999999987654321 1111122333321 112211 222333333
Q ss_pred CCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCC-CCCCcEEEEeeCChHHHhhcccc
Q 046889 236 KELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPY-GNDGCKFLLTSRSRAACNQMQAH 302 (333)
Q Consensus 236 ~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~-~~~g~~vivTTr~~~v~~~~~~~ 302 (333)
.... ..+ -+.+...|.+.|..++-+|+||++.+..|... +...+ ...|..||++||+.+.+..++++
T Consensus 376 ~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr 455 (538)
T 3ozx_A 376 HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455 (538)
T ss_dssp GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 2111 112 34556778999999999999999998755322 21222 22477899999999999888887
Q ss_pred eEecC
Q 046889 303 IVDVR 307 (333)
Q Consensus 303 ~~~l~ 307 (333)
.+.|.
T Consensus 456 i~vl~ 460 (538)
T 3ozx_A 456 IIVFK 460 (538)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 75443
No 60
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=8.8e-07 Score=77.39 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=86.2
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
...++|.+..++.|...+.. .....+.|+|++|+|||+||+.+.+.... ..+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHH-
Confidence 45688999998888877632 23457899999999999999999877531 112222211100
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc----------------hhhhhccC----CCCCC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ----------------IELDRVGI----PYGND 282 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~----~~~~~ 282 (333)
.............+.......+.+|+|||+... ..+..+.. .....
T Consensus 90 --------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 --------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp --------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred --------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000101111222233333456789999998642 11111111 11223
Q ss_pred CcEEEEeeCChHHHh-h-c---c-cceEecCCCCHHHHHHHHHhhccc
Q 046889 283 GCKFLLTSRSRAACN-Q-M---Q-AHIVDVRTLTEEESWRSAEGKRRV 324 (333)
Q Consensus 283 g~~vivTTr~~~v~~-~-~---~-~~~~~l~~L~~~e~~~lf~~~a~~ 324 (333)
+..||.||....... . . . ...+.+.+.+.++..++|......
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 567777887654311 0 1 1 123889999999999999887643
No 61
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.59 E-value=4.1e-08 Score=93.60 Aligned_cols=130 Identities=17% Similarity=0.249 Sum_probs=80.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CC-eEEEEEeCCCC------CHHHHH--------------HHHHHH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FD-EVAMAVVSQTP------SITKIQ--------------DEIAGW 232 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~------~~~~~~--------------~~i~~~ 232 (333)
.++ +++|+|+||+|||||++.+++..++... .. .....+++|.. ++.+.+ ..+++.
T Consensus 311 ~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 311 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 355 9999999999999999999987654321 10 11123344432 222222 122223
Q ss_pred hCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhc
Q 046889 233 LGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 233 l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~ 299 (333)
+++.... ..+ -+.....|.+.|..++-+|+||++.+..|... +...+. ..|..||++||+.+.+..+
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 3332111 122 34556678899999999999999998755332 211111 2377899999999998888
Q ss_pred ccceEec
Q 046889 300 QAHIVDV 306 (333)
Q Consensus 300 ~~~~~~l 306 (333)
+++.+.|
T Consensus 469 ~drv~vl 475 (538)
T 1yqt_A 469 SDRLMVF 475 (538)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8777444
No 62
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.59 E-value=3.5e-07 Score=85.17 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=87.4
Q ss_pred ccccccccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCHHHHHHH
Q 046889 153 SEGFYNFKSRESTM---KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-PSITKIQDE 228 (333)
Q Consensus 153 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~ 228 (333)
|.....++|.+..+ ..|...+..+....+.|+|+.|+||||||+.+.+... .. ++.++.. ..... ++.
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~-----f~~l~a~~~~~~~-ir~ 93 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--AD-----VERISAVTSGVKE-IRE 93 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CE-----EEEEETTTCCHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CC-----eEEEEeccCCHHH-HHH
Confidence 44567789999888 7888888888877899999999999999999998763 11 2222221 22222 112
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE-eeCChHH--Hhhccc--
Q 046889 229 IAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL-TSRSRAA--CNQMQA-- 301 (333)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv-TTr~~~v--~~~~~~-- 301 (333)
++... .......++.+|+|||+... .....+..........+|. ||.+... ...+-.
T Consensus 94 ~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 94 AIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp HHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred HHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCce
Confidence 11110 01112357889999999754 2222221111122233444 5555432 111222
Q ss_pred ceEecCCCCHHHHHHHHHhhcc
Q 046889 302 HIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 302 ~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
..+.+.+++.++...++.+..-
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHH
Confidence 2388999999999999987753
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1e-07 Score=91.86 Aligned_cols=129 Identities=13% Similarity=0.211 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC--eEEEEEeCCCC------CH--------------HHHHHHHHHHhCCC
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFD--EVAMAVVSQTP------SI--------------TKIQDEIAGWLGIK 236 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~------~~--------------~~~~~~i~~~l~~~ 236 (333)
.+++|+|+||+|||||++.+.+..++...-. ..-...+++.. +. ......+++.+++.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 3899999999999999999998765433211 11112222221 11 12334556666654
Q ss_pred CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC-CCCCcEEEEeeCChHHHhhcccce
Q 046889 237 EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY-GNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 237 ~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
.. ...+ -+.+...|.+.|..++-+|+||++.+..|.. .+...+ ...|..||++||+.+.+..++++.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrv 538 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV 538 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 22 1223 3455677899999999999999998875532 221222 123778999999999988888877
Q ss_pred EecC
Q 046889 304 VDVR 307 (333)
Q Consensus 304 ~~l~ 307 (333)
+.+.
T Consensus 539 ivl~ 542 (608)
T 3j16_B 539 IVFE 542 (608)
T ss_dssp EECE
T ss_pred EEEe
Confidence 5554
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.57 E-value=5.1e-07 Score=79.87 Aligned_cols=149 Identities=12% Similarity=0.136 Sum_probs=83.6
Q ss_pred cccchHHHHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 158 NFKSRESTMKDIMEAMK---------------DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
.++|.+..++.|...+. ......+.|+|+.|+|||+||+.+.+............++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888877777765543 223346899999999999999999888754333222223333311
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc-----------hhhhhcc--CCCCCCCcEEEEe
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ-----------IELDRVG--IPYGNDGCKFLLT 289 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~--~~~~~~g~~vivT 289 (333)
.+.. .............+... +..+|+|||+... ..+..+. +.....+..||+|
T Consensus 109 ---------~l~~-~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVG-QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCC-SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhh-hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0000 11111111111112211 4569999999733 1122221 1112335677888
Q ss_pred eCChH----------HHhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889 290 SRSRA----------ACNQMQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 290 Tr~~~----------v~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
|.... +..++. ..+.+.+++.++...++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHH
Confidence 76432 222221 3489999999999999977653
No 65
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=2.2e-07 Score=82.36 Aligned_cols=151 Identities=11% Similarity=0.146 Sum_probs=89.2
Q ss_pred cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL 233 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 233 (333)
.....++|++..++.+..++..+..+.+.++|+.|+|||++++.+.........-...+.+..+......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------- 83 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID---------- 83 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT----------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH----------
Confidence 3446689999999999999887765569999999999999999998875311100011222222211100
Q ss_pred CCCCCCCCCHHHHHHHHHHH--H-ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhhccc--ce
Q 046889 234 GIKELPDNDELVRASLLCKR--I-EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQMQA--HI 303 (333)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~~~~--~~ 303 (333)
........+... + .+++.++|+||+... .....+. +.....++.+|+||....- ...+.. ..
T Consensus 84 --------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 84 --------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp --------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred --------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 000111111111 1 246789999998654 2222221 2222346778888876542 111111 24
Q ss_pred EecCCCCHHHHHHHHHhhc
Q 046889 304 VDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~a 322 (333)
+.+.+++.++...++.+.+
T Consensus 156 i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHH
Confidence 8999999999999888665
No 66
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.55 E-value=1e-07 Score=82.35 Aligned_cols=134 Identities=11% Similarity=0.102 Sum_probs=76.5
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe------------EEEEEeCCCCC-----H-------
Q 046889 169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE------------VAMAVVSQTPS-----I------- 222 (333)
Q Consensus 169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~------------~~wv~v~~~~~-----~------- 222 (333)
+...+..++ +++|+|++|+|||||++.+.+.....+. ++. ....+++|.+. +
T Consensus 39 vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~ 116 (260)
T 2ghi_A 39 INFFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG 116 (260)
T ss_dssp EEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTT
T ss_pred eEEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhcc
Confidence 333344566 9999999999999999999876432110 000 00122333321 0
Q ss_pred -----HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hh
Q 046889 223 -----TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DR 274 (333)
Q Consensus 223 -----~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~ 274 (333)
..-....++.+++. .....+ -+..+-.+.+.|..++-+++||++.+..|. ..
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 11122333333321 011223 344566788888899999999999877442 22
Q ss_pred ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+...... |..||++||+...+.. +++.+.|
T Consensus 197 ~l~~l~~-~~tviivtH~~~~~~~-~d~i~~l 226 (260)
T 2ghi_A 197 AVEDLRK-NRTLIIIAHRLSTISS-AESIILL 226 (260)
T ss_dssp HHHHHTT-TSEEEEECSSGGGSTT-CSEEEEE
T ss_pred HHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEE
Confidence 2122222 6789999999887654 5554433
No 67
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.52 E-value=6.2e-08 Score=93.50 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=85.1
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-----------CCe--------------EEEEEeCCC
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-----------FDE--------------VAMAVVSQT 219 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-----------f~~--------------~~wv~v~~~ 219 (333)
+..+. .+..|+ +++|+|+||+|||||++.+.+...+.. . |.. .....+.+.
T Consensus 108 l~~vs-~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 108 LYRLP-IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp EECCC-CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eCCCC-CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 34444 455667 999999999999999999986543211 0 100 000111111
Q ss_pred C---------CHHH---------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889 220 P---------SITK---------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-- 273 (333)
Q Consensus 220 ~---------~~~~---------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-- 273 (333)
. +..+ ....+++.+++.... ..+ -+...-.|.+.|..++-+|+||++.+..|..
T Consensus 185 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 0 1111 234677777775321 122 3455677999999999999999999875532
Q ss_pred ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...+...|..||++||+...+..+++..+.|
T Consensus 265 ~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 265 LKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 221222223778999999999988777766444
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.52 E-value=3.9e-08 Score=79.49 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHccCceEEEEeCCCCchhhh----------------------hccCCCCCCCcEEEEeeCChHHHhhc
Q 046889 244 LVRASLLCKRIEKQRVLVILDDLWVQIELD----------------------RVGIPYGNDGCKFLLTSRSRAACNQM 299 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----------------------~l~~~~~~~g~~vivTTr~~~v~~~~ 299 (333)
......+.+.+..++.+++||++.+..+.. .+.......|..+|++||+.+.+..+
T Consensus 88 ~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 88 RKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 344567888888999999999997654322 12222223388899999999887654
No 69
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.52 E-value=2.1e-07 Score=88.57 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------------CC--------------eEEEEEeCCCC---------C
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKM--------------FD--------------EVAMAVVSQTP---------S 221 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------------f~--------------~~~wv~v~~~~---------~ 221 (333)
.+++|+|+||+|||||++.+.+...+... |. ........+.. .
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence 39999999999999999999875432110 00 00011111110 1
Q ss_pred HHH---------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCC
Q 046889 222 ITK---------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYG 280 (333)
Q Consensus 222 ~~~---------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~ 280 (333)
... ....+++.+++..... .+ .+.+.-.|.+.|..++-+|+||++.+..+.. .+...+.
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 111 2345677777642222 22 3455677899999999999999998775422 2222223
Q ss_pred CCCcEEEEeeCChHHHhhcccce
Q 046889 281 NDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 281 ~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
. |..||++||+...+..+++..
T Consensus 186 ~-g~tii~vsHdl~~~~~~~d~i 207 (538)
T 3ozx_A 186 K-NKYVIVVDHDLIVLDYLTDLI 207 (538)
T ss_dssp T-TSEEEEECSCHHHHHHHCSEE
T ss_pred C-CCEEEEEEeChHHHHhhCCEE
Confidence 3 778999999999888777766
No 70
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.51 E-value=2.4e-07 Score=79.21 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=61.2
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----------------
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK---------------- 236 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~---------------- 236 (333)
+..++ +++|+||+|+|||||++.+......... ....++.... ....+. .....++..
T Consensus 27 i~~G~--~~~l~GpnGsGKSTLl~~i~~~~~~~~~-~~~~~~~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 100 (251)
T 2ehv_A 27 FPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYG-EPGVFVTLEE--RARDLR-REMASFGWDFEKYEKEGKIAIVDGV 100 (251)
T ss_dssp EETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSS--CHHHHH-HHHHTTTCCHHHHHHTTSEEEEC--
T ss_pred CCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEEccC--CHHHHH-HHHHHcCCChHHHhhcCCEEEEEcc
Confidence 34566 9999999999999999999843221111 2333443322 222221 112222211
Q ss_pred -------------CCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCchh-----------hhhccCCCCCCCcEEEEeeC
Q 046889 237 -------------ELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQIE-----------LDRVGIPYGNDGCKFLLTSR 291 (333)
Q Consensus 237 -------------~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~-----------~~~l~~~~~~~g~~vivTTr 291 (333)
........+....+...+. .++-+++||++....+ +..+.......|..||++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 101 SSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred ccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0011123444444544443 4778999998754321 22232222334889999999
Q ss_pred ChHHH
Q 046889 292 SRAAC 296 (333)
Q Consensus 292 ~~~v~ 296 (333)
+...+
T Consensus 181 ~~~~~ 185 (251)
T 2ehv_A 181 APDPQ 185 (251)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 97766
No 71
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.51 E-value=5.4e-06 Score=71.28 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=79.4
Q ss_pred cccccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAMK---D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...++|.+..++.+...+. . .....+.|+|+.|+|||+||+.+.+... .. .+.+..+.-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHh--
Confidence 3457888777766655432 1 2234688999999999999999988653 11 22233222111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-----------------hhhhccC---CC-CCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-----------------ELDRVGI---PY-GND 282 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~---~~-~~~ 282 (333)
.............+.......+.+|+|||+.... .+..+.. .. ...
T Consensus 78 -------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 -------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0001111112222333334467999999997530 1112211 11 122
Q ss_pred CcEEEEeeCChHHHh-hcc-----cceEecCCCCHHHHHHHHHhhc
Q 046889 283 GCKFLLTSRSRAACN-QMQ-----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 283 g~~vivTTr~~~v~~-~~~-----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+..||.||....... .+. ...+.+...+.++..+++.+.+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 556777776654311 111 1237888999999999988765
No 72
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.48 E-value=2e-07 Score=82.20 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------- 222 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+... ++. .....++|.+.+
T Consensus 69 vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e 146 (306)
T 3nh6_A 69 TLQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD 146 (306)
T ss_dssp EEEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH
T ss_pred eeeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH
Confidence 3444444455667 9999999999999999999876543210 000 012233443210
Q ss_pred ----------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 223 ----------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 223 ----------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
..-....++..+.. .....+ -+..+-.|.+.|-.++-+|+||++.+..|.
T Consensus 147 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~ 226 (306)
T 3nh6_A 147 NIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226 (306)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHH
T ss_pred HHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 11122222222221 011223 345566788888889999999999877442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
........ .+..+|++||+...+.. ++..+.|
T Consensus 227 ~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl 261 (306)
T 3nh6_A 227 RAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVI 261 (306)
T ss_dssp HHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEE
T ss_pred HHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEE
Confidence 11111111 25679999999998765 5555444
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.47 E-value=4e-07 Score=91.48 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC---eEEEEEeCCCC-------CH-------
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD---EVAMAVVSQTP-------SI------- 222 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~~-------~~------- 222 (333)
||....++++...+..|+ +++|+|+||+|||||++.+.+-. + ..+. ....+++.+.. +.
T Consensus 445 yg~~~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~LagG~-i-~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~ 520 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIANGQ-V-DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFES 520 (986)
T ss_dssp ETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHHTC-S-TTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTT
T ss_pred ECCEEeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC-c-CCCccccceeEEEEcccccccccCCcHHHHHHHh
Confidence 343334445555555677 99999999999999999998421 1 0111 01123344321 11
Q ss_pred ----HHHHHHHHHHhCCC------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcE
Q 046889 223 ----TKIQDEIAGWLGIK------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCK 285 (333)
Q Consensus 223 ----~~~~~~i~~~l~~~------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~ 285 (333)
......+++.+++. .....+ .+..+-.|.+.|..++-+|+||++.+..|. ..+... .|..
T Consensus 521 ~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~t 597 (986)
T 2iw3_A 521 GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGIT 597 (986)
T ss_dssp CSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSE
T ss_pred hcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCE
Confidence 22345567777763 112233 345566788899999999999999887542 222122 4778
Q ss_pred EEEeeCChHHHhhcccceEec
Q 046889 286 FLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 286 vivTTr~~~v~~~~~~~~~~l 306 (333)
||++||+...+..++++.+.|
T Consensus 598 vIivSHdl~~l~~~adrii~L 618 (986)
T 2iw3_A 598 SITISHDSVFLDNVCEYIINY 618 (986)
T ss_dssp EEEECSCHHHHHHHCSEEEEE
T ss_pred EEEEECCHHHHHHhCCEEEEE
Confidence 999999999988777776444
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.46 E-value=3.2e-07 Score=74.47 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=42.5
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
....++|++..++.+...+..+....+.|+|+.|+|||+|++.+.....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999998776666789999999999999999988764
No 75
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.43 E-value=3.1e-07 Score=88.60 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-----
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI----- 222 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~----- 222 (333)
...++++...+..|+ +++|+|++|+|||||++.+.+..++... ++. .....++|++..
T Consensus 356 ~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433 (582)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence 456777777777788 9999999999999999999876543211 000 012233333210
Q ss_pred -------------HHHHHHHHHHhCCCC----------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 223 -------------TKIQDEIAGWLGIKE----------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 223 -------------~~~~~~i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
.+-..+.++.++..+ ....+ .+.++-.+.+.+-.++-+++|||+.+..|.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 112223333333210 01122 344556788888899999999999877442
Q ss_pred ------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
........ .|..+|++||+...... +++.+.+
T Consensus 514 ~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l 551 (582)
T 3b5x_A 514 ESERAIQAALDELQ-KNKTVLVIAHRLSTIEQ-ADEILVV 551 (582)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEEEEE
Confidence 22212222 27789999999887763 5555444
No 76
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.42 E-value=4.1e-07 Score=77.09 Aligned_cols=140 Identities=12% Similarity=0.142 Sum_probs=81.4
Q ss_pred ccccch---HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889 157 YNFKSR---ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL 233 (333)
Q Consensus 157 ~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 233 (333)
..|+++ ...++.+..+...+....+.|+|+.|+|||||++.+.+..... .....|+..+.... .+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~------~~~~-- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHAS------ISTA-- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGG------SCGG--
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHH------HHHH--
Confidence 445552 4666777776665455689999999999999999999887643 22344555432111 0000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh----hhhc---cCCCCCCCc-EEEEeeCChH---------HH
Q 046889 234 GIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE----LDRV---GIPYGNDGC-KFLLTSRSRA---------AC 296 (333)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l---~~~~~~~g~-~vivTTr~~~---------v~ 296 (333)
..+.+ .++.+|++||+..... ...+ .......+. .+|+||+... +.
T Consensus 98 ----------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~ 160 (242)
T 3bos_A 98 ----------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLV 160 (242)
T ss_dssp ----------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHH
T ss_pred ----------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhh
Confidence 00011 3567999999865421 1111 111111233 4777776332 22
Q ss_pred hhccc-ceEecCCCCHHHHHHHHHhhcc
Q 046889 297 NQMQA-HIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 297 ~~~~~-~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
.++.. ..+.+.+++.++..+++.+.+.
T Consensus 161 ~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 161 SRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred hHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 22221 3489999999999999988653
No 77
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=3.5e-07 Score=82.39 Aligned_cols=163 Identities=10% Similarity=0.084 Sum_probs=89.4
Q ss_pred cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD-EVAMAVVSQTPSITKIQDEIAGW 232 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 232 (333)
.....++|++..++.+..++..+....+.|+|++|+||||+++.+.+.......+. ....+..+....... +++.+..
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKN 112 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHH
Confidence 34567899999999999999877544589999999999999999998754211111 122222222222222 2222211
Q ss_pred hCCC-CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-HHhhccc--ceE
Q 046889 233 LGIK-ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQA--HIV 304 (333)
Q Consensus 233 l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~~--~~~ 304 (333)
+... ....... .....-..++.++++||+.... ....+. +......+++|++|.... +...+.. ..+
T Consensus 113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 1100 0000000 0000111355699999986431 122221 111223566777776543 2111111 248
Q ss_pred ecCCCCHHHHHHHHHhhc
Q 046889 305 DVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 305 ~l~~L~~~e~~~lf~~~a 322 (333)
.+.+++.++....+.+.+
T Consensus 188 ~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFIS 205 (353)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 899999999999888765
No 78
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.42 E-value=1.7e-06 Score=78.49 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=87.8
Q ss_pred ccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL 233 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 233 (333)
....++|++..++.+...+..++ .+.+.|+|+.|+||||+++.+.........+.. ..+........+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 44568999999999999987765 346889999999999999999877642211100 0000000011111000
Q ss_pred C-----CCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhh
Q 046889 234 G-----IKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQ 298 (333)
Q Consensus 234 ~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~ 298 (333)
. .........+ ....+.+.+ .+++.++|+||+... .....+. +.....++.+|++|++..- ...
T Consensus 87 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CSSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 0 0000000000 111222222 245789999998653 2222221 1112336677777775432 111
Q ss_pred cc--cceEecCCCCHHHHHHHHHhhc
Q 046889 299 MQ--AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 299 ~~--~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+. ...+.+.+++.++...++.+.+
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 11 2338999999999999988654
No 79
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.41 E-value=1.5e-07 Score=85.87 Aligned_cols=139 Identities=15% Similarity=0.221 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----------CCCe----EEEEEeCCCCC--------
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----------MFDE----VAMAVVSQTPS-------- 221 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----------~f~~----~~wv~v~~~~~-------- 221 (333)
..++.+...+..++ +++|+||+|+|||||++.+.+.....+ .... .....+.|.+.
T Consensus 35 ~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e 112 (390)
T 3gd7_A 35 AILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK 112 (390)
T ss_dssp CSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH
T ss_pred EEeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH
Confidence 34445555555677 999999999999999999987543110 0000 01122333321
Q ss_pred --------HHHHHHHHHHHhCCC----CC-CC-----------CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889 222 --------ITKIQDEIAGWLGIK----EL-PD-----------ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----- 271 (333)
Q Consensus 222 --------~~~~~~~i~~~l~~~----~~-~~-----------~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----- 271 (333)
...-...+++.+++. .. .. .+ -+.++-.|.+.|..++-+|+||++.+..|
T Consensus 113 nl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~ 192 (390)
T 3gd7_A 113 NLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192 (390)
T ss_dssp HHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred HhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 122334556666553 11 11 23 44566778999999999999999876543
Q ss_pred -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+.... ..+..+|++||+.+... ++++.+.|
T Consensus 193 ~l~~~l~~~-~~~~tvi~vtHd~e~~~-~aDri~vl 226 (390)
T 3gd7_A 193 IIRRTLKQA-FADCTVILCEARIEAML-ECDQFLVI 226 (390)
T ss_dssp HHHHHHHTT-TTTSCEEEECSSSGGGT-TCSEEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEEcCHHHHH-hCCEEEEE
Confidence 22221122 23678999999987554 35555433
No 80
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.40 E-value=1.6e-05 Score=69.84 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...++|.+..++.+...+.. .....+.|+||+|+||||||+.+.+... . ..+.+..+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--A---TFLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--C---EEEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C---CeEEeeHHHHhh--
Confidence 45688999988888877632 1235789999999999999999987653 1 122232222110
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHH-HHHHHHccCceEEEEeCCCCchh-----------------hhhc-cCCCC--CC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRAS-LLCKRIEKQRVLVILDDLWVQIE-----------------LDRV-GIPYG--ND 282 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-----------------~~~l-~~~~~--~~ 282 (333)
. .......... .+......++.+|+|||+..... +..+ ..+.. ..
T Consensus 93 -------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 1111222222 23333345788999999864310 1111 11111 12
Q ss_pred CcEEEEeeCChH-----HHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 283 GCKFLLTSRSRA-----ACNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 283 g~~vivTTr~~~-----v~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+..||.||+... +..++. ..+.+...+.++...++...+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHH
Confidence 456777887653 223332 236677777777777776654
No 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=1.4e-06 Score=78.19 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=86.3
Q ss_pred ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD-EVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
|.....++|.+..++.|...+..++...+.++||+|+||||+++.+.+...... +. ...-+..+....
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~---------- 89 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRG---------- 89 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCS----------
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCccccc----------
Confidence 344567889999999999999888754589999999999999999998764211 11 011111111111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHH------ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HHhhcc
Q 046889 232 WLGIKELPDNDELVRASLLCKRI------EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQ 300 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~ 300 (333)
.......+.... ...+.++|+|++... .....+. +......+.+|++|.... +...+.
T Consensus 90 -----------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 90 -----------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -----------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 111111122211 134679999998643 2222221 111233566777776543 111111
Q ss_pred c--ceEecCCCCHHHHHHHHHhhc
Q 046889 301 A--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 301 ~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
. ..+.+.+++.++..+.+.+.+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHH
Confidence 1 237889999988888777544
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.37 E-value=2.4e-07 Score=75.32 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC------------CCCCHHHHHHHHHHHhCCC-----CCCCCC
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS------------QTPSITKIQDEIAGWLGIK-----ELPDND 242 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~------------~~~~~~~~~~~i~~~l~~~-----~~~~~~ 242 (333)
.++|+|++|+|||||++.+.+...+. +.....-... +..+. .+.++..++.. ......
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~--~~g~~~~~~~~~~~~~~ig~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEVRDPETKKRTGFRIITTEG---KKKIFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG--EEEEEEEEEC------CCEEEEEETTC---CEEEEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--CCCEEhhhhccccccceeEEEeecCcH---HHHHHHhhcCCccccccccccC
Confidence 68999999999999999999887531 1110000000 00000 00001111110 000011
Q ss_pred ---HHHHHHHHHHH-----HccCceEEEEeC--CCCchhh---hhccCCCCCCCcEEEEee---CChHHHhhcccc----
Q 046889 243 ---ELVRASLLCKR-----IEKQRVLVILDD--LWVQIEL---DRVGIPYGNDGCKFLLTS---RSRAACNQMQAH---- 302 (333)
Q Consensus 243 ---~~~~~~~l~~~-----l~~k~~LlVlDd--v~~~~~~---~~l~~~~~~~g~~vivTT---r~~~v~~~~~~~---- 302 (333)
.+.....+... +..++-+++||+ +.+..+. ..+.-.....+..+|++| |+..++..+++.
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~ 156 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCE
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcE
Confidence 22334455664 778889999999 6665331 111111122355577777 466776666554
Q ss_pred eEecCCCCHHHHHH
Q 046889 303 IVDVRTLTEEESWR 316 (333)
Q Consensus 303 ~~~l~~L~~~e~~~ 316 (333)
.+.+...+.++..+
T Consensus 157 i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 157 LIELTPENRDVILE 170 (178)
T ss_dssp EEECCTTTTTTHHH
T ss_pred EEEecCcCHHHHHH
Confidence 37887777655544
No 83
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.37 E-value=2.9e-06 Score=79.63 Aligned_cols=147 Identities=12% Similarity=0.191 Sum_probs=81.2
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CeEEEEEeCCCCCHHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMF---DEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
...+++|++.+++.+...+......-+.|+|++|+|||+||+.+.......... ....++.+.-. ..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------~~ 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------TK 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------cc
Confidence 355789999999999999976555567899999999999999999886422110 11112211111 00
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCC-CcEEEEeeCChHH----------Hhhcc
Q 046889 232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGND-GCKFLLTSRSRAA----------CNQMQ 300 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~-g~~vivTTr~~~v----------~~~~~ 300 (333)
..+. ..... ...+...-..++.+|++| ...+...+..+.-.. ..++|.+|..... ..++.
T Consensus 248 ~~g~---~e~~~---~~~~~~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 248 YRGE---FEDRL---KKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp --------CTTH---HHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred ccch---HHHHH---HHHHHHHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 0000 00111 112222223567899999 222222222333233 4556666654431 12221
Q ss_pred cceEecCCCCHHHHHHHHHhhc
Q 046889 301 AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 301 ~~~~~l~~L~~~e~~~lf~~~a 322 (333)
.+.+.+.+.++...++....
T Consensus 319 --~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 319 --PIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp --EEECCCCCHHHHHHHHHHTT
T ss_pred --cceeCCCCHHHHHHHHHHHH
Confidence 38899999999999998654
No 84
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.5e-06 Score=82.58 Aligned_cols=162 Identities=9% Similarity=0.062 Sum_probs=89.4
Q ss_pred ccccccccchHHHHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKD-----------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV 215 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 215 (333)
|.....++|++..++.|..++.. +..+.+.|+||.|+||||||+.+.+... + ..+.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44556789999999999999864 1346899999999999999999988762 1 223333
Q ss_pred eCCCCCHHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-----hhhccCCCCCCCcEEEEe
Q 046889 216 VSQTPSITKIQDEIAGWLGI-KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-----LDRVGIPYGNDGCKFLLT 289 (333)
Q Consensus 216 v~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~~vivT 289 (333)
.+.... ...+...+..... ..... -...... ......++.+|++||+..... +..+..-....+..||++
T Consensus 110 ~s~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli 185 (516)
T 1sxj_A 110 ASDVRS-KTLLNAGVKNALDNMSVVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI 185 (516)
T ss_dssp TTSCCC-HHHHHHTGGGGTTBCCSTT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE
T ss_pred CCCcch-HHHHHHHHHHHhccccHHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE
Confidence 343333 2233332222111 00000 0000000 001124678999999965411 122211111224456666
Q ss_pred eCChHH--Hhhccc--ceEecCCCCHHHHHHHHHhhcc
Q 046889 290 SRSRAA--CNQMQA--HIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 290 Tr~~~v--~~~~~~--~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
+.+... ...+.. ..+.+.+++.++..+++.+.+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 654331 112222 2389999999999988877653
No 85
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.35 E-value=1.9e-06 Score=72.04 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=64.4
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----------CCCCC
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-----------ELPDN 241 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----------~~~~~ 241 (333)
+..+. ++.|+|++|+|||||+..+.. .. -...+|+......+...+. .++..++.. .....
T Consensus 17 i~~G~--~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (220)
T 2cvh_A 17 FAPGV--LTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDF 88 (220)
T ss_dssp BCTTS--EEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTT
T ss_pred CcCCE--EEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCH
Confidence 33455 999999999999999999988 21 1356677665544544433 333333321 11111
Q ss_pred C-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----------hhc---cCCC-CCCCcEEEEeeCChH
Q 046889 242 D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-----------DRV---GIPY-GNDGCKFLLTSRSRA 294 (333)
Q Consensus 242 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~l---~~~~-~~~g~~vivTTr~~~ 294 (333)
. .......+...+..+.-++|+|++....+. ..+ .... ...|+.||+|+|...
T Consensus 89 ~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 89 KEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp SHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 1 122334444444345789999988754221 111 0111 223778999999754
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.34 E-value=1.8e-06 Score=72.83 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=63.2
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--------------
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL-------------- 238 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------- 238 (333)
+..+. +++|+|++|+|||||++.+.......+ ..+.|+.... ....+...+ ..++....
T Consensus 20 i~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (235)
T 2w0m_A 20 IPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALM 92 (235)
T ss_dssp EETTC--EEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC
T ss_pred CcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccc
Confidence 34455 899999999999999999987665332 2344544332 334433332 23332100
Q ss_pred ---------CCCCHHHHHHHHHHHHcc-Cce--EEEEeCCCCch--h---hhhc---cCCC-CCCCcEEEEeeCCh
Q 046889 239 ---------PDNDELVRASLLCKRIEK-QRV--LVILDDLWVQI--E---LDRV---GIPY-GNDGCKFLLTSRSR 293 (333)
Q Consensus 239 ---------~~~~~~~~~~~l~~~l~~-k~~--LlVlDdv~~~~--~---~~~l---~~~~-~~~g~~vivTTr~~ 293 (333)
...+..+....+.+.+.. ++- ++|+|++.... + ...+ .... ...|+.||++||..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 93 KEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp ----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred cccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 111445555555555433 555 99999987432 1 1111 1111 23488999999987
No 87
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.33 E-value=3.4e-06 Score=75.20 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 046889 165 TMKDIMEAMKDE--KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND 242 (333)
Q Consensus 165 ~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 242 (333)
....+...+..+ ....+.|+|++|+|||||++.+.+..... .. ..+++.. ..+...+...+.. ..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~-----~~ 88 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKK-----GT 88 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHH-----TC
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHc-----Cc
Confidence 344444444332 23478999999999999999999887543 11 2233332 2333333333211 01
Q ss_pred HHHHHHHHHHHHccCceEEEEeCCCCch---h----hhhccCCCCCCCcEEEEeeCChH---------HHhhccc-ceEe
Q 046889 243 ELVRASLLCKRIEKQRVLVILDDLWVQI---E----LDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQA-HIVD 305 (333)
Q Consensus 243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~----~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~-~~~~ 305 (333)
...+...+ .+..+|+|||+.... . +..+.......|..+|+||.+.. +..++.. ..+.
T Consensus 89 ----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 89 ----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp ----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred ----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 11122223 246799999986532 1 11111111223667888776432 2333433 3389
Q ss_pred cCCCCHHHHHHHHHhhcc
Q 046889 306 VRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 306 l~~L~~~e~~~lf~~~a~ 323 (333)
+.+ +.++...++.+.+.
T Consensus 164 l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp CCC-CHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHH
Confidence 999 99999999988763
No 88
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.33 E-value=1.3e-06 Score=73.63 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhh--c--CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHH--
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEK--K--MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPDNDEL-- 244 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~--~--~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~-- 244 (333)
+++|+|++|+|||||++.+....... . .-...+|+.-....... -+..+...++... .......
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNSNHQ 105 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCChHHH
Confidence 99999999999999999998754321 1 12345666544433332 2334444444320 0011111
Q ss_pred -HHHHHHHHHHc------cCceEEEEeCCCCchhh---------------hhc---cCCC-CCCCcEEEEeeC----ChH
Q 046889 245 -VRASLLCKRIE------KQRVLVILDDLWVQIEL---------------DRV---GIPY-GNDGCKFLLTSR----SRA 294 (333)
Q Consensus 245 -~~~~~l~~~l~------~k~~LlVlDdv~~~~~~---------------~~l---~~~~-~~~g~~vivTTr----~~~ 294 (333)
.....+...+. .++-++|||++.+..+- ..+ .... ...|+.||++|| ...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~ 185 (231)
T 4a74_A 106 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGH 185 (231)
T ss_dssp HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----
T ss_pred HHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcch
Confidence 11233333333 47789999998754211 011 1111 233889999999 444
Q ss_pred HHhhcccceEecC
Q 046889 295 ACNQMQAHIVDVR 307 (333)
Q Consensus 295 v~~~~~~~~~~l~ 307 (333)
+....++..+.+.
T Consensus 186 ~~~~~~d~~l~l~ 198 (231)
T 4a74_A 186 ILAHSATLRVYLR 198 (231)
T ss_dssp ----CCSEEEEEE
T ss_pred hhHhhceEEEEEE
Confidence 4555555554443
No 89
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.32 E-value=1.6e-05 Score=79.22 Aligned_cols=154 Identities=14% Similarity=0.222 Sum_probs=90.8
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
...+++||+.++..+...+......-+.|+|+.|+|||++++.+......... ..+.++. +.- . .+
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~--~--~l----- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDI--G--SL----- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCC--C---------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcH--H--HH-----
Confidence 45578999999999999987665557889999999999999999987643221 1223321 110 0 00
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCc----------hhhhhccCCC-CCCCcEEEEeeCChHHHhh
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQ----------IELDRVGIPY-GNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~l~~~~-~~~g~~vivTTr~~~v~~~ 298 (333)
+.. .............+...+. .++.+|++||+... .+...+..+. ...+..+|.+|........
T Consensus 254 --~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 --LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp ---CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred --hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhh
Confidence 000 0112233333344444444 35789999998743 1222222333 2335566777765443211
Q ss_pred ------cccc--eEecCCCCHHHHHHHHHhh
Q 046889 299 ------MQAH--IVDVRTLTEEESWRSAEGK 321 (333)
Q Consensus 299 ------~~~~--~~~l~~L~~~e~~~lf~~~ 321 (333)
+..+ .+.+...+.++..+++...
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 1112 3889999999988888754
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.31 E-value=5.8e-07 Score=70.75 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+.|+|++|+|||||++.+++....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999988764
No 91
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.29 E-value=9.3e-06 Score=72.68 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=81.6
Q ss_pred ccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
....++|++..++.+..++.. .....+.|+|+.|+|||+||+.+.+... .. .+.+..+....... +..+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~~-~~~~ 100 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSGD-LAAI 100 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHHH-HHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchhH-HHHH
Confidence 456789999999988888753 3344689999999999999999977643 11 12222222111111 1111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--h---hhhc----cC-------------CCCCCCcEEE
Q 046889 230 AGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--E---LDRV----GI-------------PYGNDGCKFL 287 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~---~~~l----~~-------------~~~~~g~~vi 287 (333)
+. . ..+..+|+|||+.... . +... .. ....++..+|
T Consensus 101 ~~--------------------~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 101 LT--------------------N--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp HH--------------------T--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred HH--------------------h--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11 0 2356788999886431 1 1111 00 0001135667
Q ss_pred EeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 288 LTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 288 vTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
.+|..... ..++ ...+.+.+++.++...++.+.+
T Consensus 159 ~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAA 197 (338)
T ss_dssp EEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHH
Confidence 67765432 2222 2348999999999999988765
No 92
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.29 E-value=1e-06 Score=86.40 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHccCce--EEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQRV--LVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~~--LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+..+..|.+.|..++- +|+||++.+..| +..+...+...|..||++||+.+++.. +++.+.|
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~ii~l 276 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA-ADYLIDI 276 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh-CCEEEEe
Confidence 4556678888888766 999999987644 222222223347889999999998764 5555555
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.28 E-value=5.5e-06 Score=83.54 Aligned_cols=154 Identities=12% Similarity=0.197 Sum_probs=83.9
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
...+++||+.++..+...+..+....+.|+|++|+|||||++.+......... .....++.+... .+..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~l~~---- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG----SLLA---- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH----Hhhc----
Confidence 45678999999999999987765556889999999999999999988743221 011112222211 0000
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch---------hhhhccCCC-CCCCcEEEEeeCChHH----
Q 046889 232 WLGIKELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI---------ELDRVGIPY-GNDGCKFLLTSRSRAA---- 295 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~-~~~g~~vivTTr~~~v---- 295 (333)
+. . ...........+...+. .++.+|++||+.... +...+..+. ...+..+|.+|.....
T Consensus 240 --g~-~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~ 315 (854)
T 1qvr_A 240 --GA-K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIE 315 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHT
T ss_pred --cC-c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhc
Confidence 00 0 11122223333333333 367899999986532 111111111 1224456666654432
Q ss_pred -Hhhcccc--eEecCCCCHHHHHHHHHh
Q 046889 296 -CNQMQAH--IVDVRTLTEEESWRSAEG 320 (333)
Q Consensus 296 -~~~~~~~--~~~l~~L~~~e~~~lf~~ 320 (333)
...+..+ .+.+.+++.++..+++..
T Consensus 316 ~d~aL~rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 316 KDPALERRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp TCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred cCHHHHhCCceEEeCCCCHHHHHHHHHh
Confidence 1122222 288999999999998864
No 94
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.28 E-value=3.1e-05 Score=68.20 Aligned_cols=147 Identities=11% Similarity=0.169 Sum_probs=84.7
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
...+.|.+..++.|...+.. .....+.|+||+|+|||+||+.+.+... . . ++.+. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~---~--~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A---N--FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---E--EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--C---C--EEEEE----h
Confidence 34578888877777766531 2335799999999999999999998753 1 1 22222 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh----------------hhhcc---CC-CCCC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE----------------LDRVG---IP-YGND 282 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~---~~-~~~~ 282 (333)
..+... .++.. . ......+.......+.+|+|||+..... ...+. -. ....
T Consensus 83 ~~l~~~---~~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTM---WFGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHH---HHTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhh---hcCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222222 12221 1 1122233333445789999999864210 11111 11 1223
Q ss_pred CcEEEEeeCChHHHh-h-cc----cceEecCCCCHHHHHHHHHhhc
Q 046889 283 GCKFLLTSRSRAACN-Q-MQ----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 283 g~~vivTTr~~~v~~-~-~~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+..||.||+..+... . .. ...+.+...+.++-.+++....
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 567788887664321 1 11 1238888888888888887765
No 95
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.23 E-value=9.2e-05 Score=65.82 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=81.6
Q ss_pred cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...+.|.+..++.|...+.- ...+-+.|+||.|+|||+||+.+.+.... . ..+.+..+.-..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHHh--
Confidence 35677888887777765521 12357899999999999999999987521 1 112222221110
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-------------hhhcc-----CCCCCCCcE
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-------------LDRVG-----IPYGNDGCK 285 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~-----~~~~~~g~~ 285 (333)
.+...........+...-..++.+|+|||+..... ...+. ......+..
T Consensus 85 -------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 11112222222223333345789999999975410 11110 111223556
Q ss_pred EEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 286 FLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 286 vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
||.||..... ..++ ...+.+...+.++..++|....
T Consensus 152 vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRF-EKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp EEEEESCTTTSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhc-CeEEEeCCcCHHHHHHHHHHHH
Confidence 6667765432 2222 1237788888888888887765
No 96
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.21 E-value=8.2e-06 Score=73.88 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=37.2
Q ss_pred cccccchHHHHHH---HHHHhhcCCc--eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 156 FYNFKSRESTMKD---IMEAMKDEKV--SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 156 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...++|++...+. +...+..+.. +.+.|+||.|+|||+||+.+.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999887665 4555544443 4899999999999999999998875
No 97
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.21 E-value=1.9e-06 Score=86.67 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHhCCCC-C------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCCCcEEEEeeCChH
Q 046889 226 QDEIAGWLGIKE-L------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGNDGCKFLLTSRSRA 294 (333)
Q Consensus 226 ~~~i~~~l~~~~-~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~g~~vivTTr~~~ 294 (333)
...++..+++.. . ...+ .+..+-.|.+.|..++-+||||++.+..|.... .-.+...|..||++||+.+
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e 959 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHH
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHH
Confidence 456677777641 1 1223 344566788889999999999999887553322 1111112457999999999
Q ss_pred HHhhcccceEecC
Q 046889 295 ACNQMQAHIVDVR 307 (333)
Q Consensus 295 v~~~~~~~~~~l~ 307 (333)
.+..++++.+.|.
T Consensus 960 ~v~~l~DrVivL~ 972 (986)
T 2iw3_A 960 FTKNLTEEVWAVK 972 (986)
T ss_dssp HHTTTCCEEECCB
T ss_pred HHHHhCCEEEEEE
Confidence 9888888776654
No 98
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.20 E-value=1.6e-06 Score=83.93 Aligned_cols=135 Identities=12% Similarity=0.161 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS-------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~-------- 221 (333)
.++++...+..|+ +++|+|++|+|||||++.+.+..++.. .... .....++|++.
T Consensus 359 vl~~isl~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 359 IFQDFSLSIPSGS--VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp EEEEEEEEECTTC--EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHH
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHH
Confidence 3444555555667 999999999999999999987654321 0000 01223333321
Q ss_pred ------------HHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 222 ------------ITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 222 ------------~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
..+-..+.++.++.. .....+ .+.++-.+.+.+-.++-+++||++.+..|.
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 112233444444321 002223 344566788888889999999999877442
Q ss_pred h------hccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889 273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHI 303 (333)
Q Consensus 273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~ 303 (333)
. ........ |..+|++||+...... +++.
T Consensus 517 ~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i 551 (595)
T 2yl4_A 517 ENEYLVQEALDRLMD-GRTVLVIAHRLSTIKN-ANMV 551 (595)
T ss_dssp HHHHHHHHHHHHHHT-TSEEEEECCCHHHHHH-SSEE
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCHHHHHc-CCEE
Confidence 2 11111122 6789999999887654 4444
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.18 E-value=1.1e-06 Score=75.94 Aligned_cols=119 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-EeCCCCCHHHHHHHHH--HHhCCCCCCC
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-VVSQTPSITKIQDEIA--GWLGIKELPD 240 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-~v~~~~~~~~~~~~i~--~~l~~~~~~~ 240 (333)
..++.+. +..++ +++|+||+|+|||||++.+.+...+. +...+++ ..+-.+-.... ..+. ..++. ..
T Consensus 15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~ 84 (261)
T 2eyu_A 15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT 84 (261)
T ss_dssp THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB
T ss_pred HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH
Confidence 3566665 44555 99999999999999999999877643 1122222 11100000000 0000 01111 11
Q ss_pred CCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHH
Q 046889 241 NDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAAC 296 (333)
Q Consensus 241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~ 296 (333)
......+.+.|..++-++++|++.+......+... ...|..|++|||+....
T Consensus 85 ---~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 85 ---KSFADALRAALREDPDVIFVGEMRDLETVETALRA-AETGHLVFGTLHTNTAI 136 (261)
T ss_dssp ---SCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HHTTCEEEEEECCSSHH
T ss_pred ---HHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-HccCCEEEEEeCcchHH
Confidence 12356788888888999999999855443332111 23477899999987643
No 100
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.17 E-value=1.5e-06 Score=77.77 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDEL 244 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 244 (333)
.++.+...+..++ +++|+|++|+|||||++.+.+...+. ...+.+.-........ .+ +.++. -.....
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~-~~---~~i~~---~~ggg~ 227 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH-HK---NYTQL---FFGGNI 227 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSS-CS---SEEEE---ECBTTB
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeecccccc-ch---hEEEE---EeCCCh
Confidence 5677777777787 89999999999999999998876542 2333332111111000 00 00000 000122
Q ss_pred HHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcccceEec-------CCCCHHHHHHH
Q 046889 245 VRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV-------RTLTEEESWRS 317 (333)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l-------~~L~~~e~~~l 317 (333)
.....+...|..++-++++|++.+...+..+ ......+..+|+|||...... ..++.+.+ ..++.+....+
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~~e~~~~l-~~~~~g~~tvi~t~H~~~~~~-~~dri~~l~~g~~~~~~~~~~~i~~~ 305 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRSSEAYDFY-NVLCSGHKGTLTTLHAGSSEE-AFIRLANMSSSNSAARNIKFESLIEG 305 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCSTHHHHHH-HHHHTTCCCEEEEEECSSHHH-HHHHHHHHHHTSGGGTTSCHHHHHHH
T ss_pred hHHHHHHHHhhhCCCEEEEcCCChHHHHHHH-HHHhcCCCEEEEEEcccHHHH-HhhhheehhcCCcccCCCCHHHHHHH
Confidence 3456678888889999999999875444333 122222335899999887433 22332211 14566665555
Q ss_pred HHh
Q 046889 318 AEG 320 (333)
Q Consensus 318 f~~ 320 (333)
+..
T Consensus 306 i~~ 308 (330)
T 2pt7_A 306 FKD 308 (330)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 101
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.17 E-value=1.7e-05 Score=70.39 Aligned_cols=138 Identities=11% Similarity=0.123 Sum_probs=81.9
Q ss_pred ccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
....++|++..+..+...+.. .....+.|+|+.|+|||+||+.+.+... . ...++..+.......+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l---- 80 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDL---- 80 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHH----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHH----
Confidence 446789999988888777742 2335788999999999999999988653 1 1233333322222221
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHc---cCceEEEEeCCCCch--hhhhc-------c-CCC------------CCCCc
Q 046889 230 AGWLGIKELPDNDELVRASLLCKRIE---KQRVLVILDDLWVQI--ELDRV-------G-IPY------------GNDGC 284 (333)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l-------~-~~~------------~~~g~ 284 (333)
...+. .++.+|+|||+.... ....+ . ... ...+.
T Consensus 81 ---------------------~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 81 ---------------------AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ---------------------HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ---------------------HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11221 356788899886541 11111 0 000 00134
Q ss_pred EEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889 285 KFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 285 ~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
.+|.+|..... ..++ ...+.+.+++.++...++.+.+.
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHH
Confidence 56766664431 2222 23489999999999999887653
No 102
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.17 E-value=2.8e-05 Score=69.13 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=83.7
Q ss_pred ccccccchHHHHHHHHHHhh----------c--CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 155 GFYNFKSRESTMKDIMEAMK----------D--EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
....++|.+..++.|...+. . ...+-+.|+||.|+|||+||+.+.+... .. ++.++ .
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~-----~~~v~----~ 84 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVS----S 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE-----EEEEE----H
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC-----EEEEc----h
Confidence 34568899998888887762 1 1234689999999999999999988753 11 22221 1
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHH-HHHHccCceEEEEeCCCCchh-------------hhhc----c-CCCCCCC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLL-CKRIEKQRVLVILDDLWVQIE-------------LDRV----G-IPYGNDG 283 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~-------------~~~l----~-~~~~~~g 283 (333)
..+. .. ...........+ ...-..++.+|+|||+..... ...+ . ......+
T Consensus 85 ~~l~----~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 85 SDLV----SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp HHHH----TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred HHHh----hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1111 00 001112222222 233344778999999864310 1111 1 1112335
Q ss_pred cEEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889 284 CKFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 284 ~~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
..||.||..... ..++ ...+.+...+.++..++|...+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf-~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHC-CEEEECCCCCHHHHHHHHHHHHT
T ss_pred eEEEEecCChhhCCHHHHccc-CeEEEeCCCCHHHHHHHHHHHhc
Confidence 666667776533 2222 12377888888899998887754
No 103
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.16 E-value=9.3e-07 Score=85.30 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----H--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----I-- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~-- 222 (333)
.++++...+..|+ +++|+|++|+|||||++.+.+..++... ++. .....++|++. +
T Consensus 358 ~l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b60_A 358 ALRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435 (582)
T ss_dssp SEEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence 4444555555667 9999999999999999999876543210 000 01223344321 0
Q ss_pred -----------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889 223 -----------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-- 272 (333)
Q Consensus 223 -----------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-- 272 (333)
.+-..+.++.++.. .....+ .+.++-.+.+.+-.++-+++||++.+..|-
T Consensus 436 ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 11222333333321 011223 344566788888889999999999877442
Q ss_pred ----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
........ .|..+|++||+...... +++.+.+
T Consensus 516 ~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l 551 (582)
T 3b60_A 516 ERAIQAALDELQ-KNRTSLVIAHRLSTIEQ-ADEIVVV 551 (582)
T ss_dssp HHHHHHHHHHHH-TTSEEEEECSCGGGTTT-CSEEEEE
T ss_pred HHHHHHHHHHHh-CCCEEEEEeccHHHHHh-CCEEEEE
Confidence 11111112 27789999999887653 5555444
No 104
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.16 E-value=3.9e-05 Score=69.26 Aligned_cols=145 Identities=12% Similarity=-0.005 Sum_probs=80.8
Q ss_pred cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...++|.+..++.|...+.. .....+.|+|+.|+|||+||+.+..... . ..+.+..+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--A---TFFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--C---EEEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--C---eEEEEehHHhhc--
Confidence 35688999888888877642 2345789999999999999999987652 1 122333322111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHHccCceEEEEeCCCCc-------------hhhhhcc-----CC-CCCCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLC-KRIEKQRVLVILDDLWVQ-------------IELDRVG-----IP-YGNDG 283 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~-------------~~~~~l~-----~~-~~~~g 283 (333)
.. ..........+. ..-..++.+|+|||+... ..+..+. .. ....+
T Consensus 156 -------------~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -------------KW-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------cc-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 001111222222 222356789999998432 0011111 11 11224
Q ss_pred cEEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||.||..... ..++. ..+.+...+.++..+++...+
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLV-KRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCC-EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHH
Confidence 556667765432 22221 237788888888888877654
No 105
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.16 E-value=4.4e-06 Score=69.00 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 046889 163 ESTMKDIMEAMKDE----KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL 238 (333)
Q Consensus 163 ~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 238 (333)
...++.+..++... ....+.|+|++|+|||+|++.+++..... .....++.+ ..+...+...+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~--- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV------PELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH------HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh------HHHHHHHHHHhcc---
Confidence 34555666665543 11578999999999999999999887532 233445543 2344444333221
Q ss_pred CCCCHHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 239 PDNDELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
..... +...+.. ..+|||||++.
T Consensus 104 --~~~~~----~~~~~~~-~~~lilDei~~ 126 (202)
T 2w58_A 104 --QTMNE----KLDYIKK-VPVLMLDDLGA 126 (202)
T ss_dssp --CCCHH----HHHHHHH-SSEEEEEEECC
T ss_pred --chHHH----HHHHhcC-CCEEEEcCCCC
Confidence 11122 2222332 24999999954
No 106
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.15 E-value=7e-05 Score=68.41 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=80.1
Q ss_pred ccccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 155 GFYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
....++|.+..++.|...+.. ....-+.|+|+.|+|||+||+.+..... . ..+.+..+.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhhc-
Confidence 346789999999988887721 1235789999999999999999977642 1 112222221111
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-------------hhhhcc------CCCCCCC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-------------ELDRVG------IPYGNDG 283 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~------~~~~~~g 283 (333)
. ............+...-...+.+|+|||+.... ....+. .......
T Consensus 187 -~-------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 -K-------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -c-------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 001111112222222333466899999996430 011110 0001224
Q ss_pred cEEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||.||..... ..++. ..+.+...+.++...++...+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHH
Confidence 556667765432 22222 237788888888888887665
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.14 E-value=7.4e-07 Score=80.38 Aligned_cols=110 Identities=10% Similarity=0.122 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEK 256 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (333)
.+++|+|++|+|||||++.+.+...... ...+ +.+.++... ... ..++.+... .... ......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i-~t~ed~~e~~~~~~-~~~v~q~~~-~~~~---~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHI-LTIEDPIEFVHESK-KCLVNQREV-HRDT---LGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEE-EEEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCC--CcEE-EEccCcHHhhhhcc-ccceeeeee-cccc---CCHHHHHHHHhhh
Confidence 4999999999999999999988876531 1111 222221110 000 000000000 0011 1234478899999
Q ss_pred CceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHh
Q 046889 257 QRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACN 297 (333)
Q Consensus 257 k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~ 297 (333)
.+-+|++|++.+.+.+..+ ......|..||+|||..+.+.
T Consensus 196 ~PdvillDEp~d~e~~~~~-~~~~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLA-LTAAETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCSHHHHHHH-HHHHHTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCCHHHHHHH-HHHHhcCCEEEEEEccChHHH
Confidence 9999999999876554443 212334778999999987753
No 108
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.13 E-value=5.9e-05 Score=64.64 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=77.8
Q ss_pred cccccchHHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAM---KD---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...++|.+..++.+...+ .. ....-+.|+|++|+|||||++.+.+... .. .+.+..+.-..
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHHHH--
Confidence 456788877766655433 21 1123588999999999999999998753 11 12222111100
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhcc----CCCCCCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVG----IPYGNDG 283 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~----~~~~~~g 283 (333)
.............+.......+.++++||+.... .+..+. ......+
T Consensus 84 -------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0111122223333333344567899999883210 011111 0112335
Q ss_pred cEEEEeeCChHHH-hhc-c----cceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAAC-NQM-Q----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v~-~~~-~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||.||...+.. ..+ . ...+.+...+.++-.+++....
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 6677777766421 111 1 1236777777777777776654
No 109
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.13 E-value=1.4e-05 Score=79.66 Aligned_cols=146 Identities=13% Similarity=0.206 Sum_probs=82.4
Q ss_pred ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889 155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
...+++|++.+++.+...+......-+.++|++|+|||++|+.+......... ..+. ++.+.-
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~------------ 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM------------ 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC--------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc------------
Confidence 45678999999999999997655556889999999999999999988642211 0111 111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCC-CCCCcEEEEeeCChH----------HHhhc
Q 046889 231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPY-GNDGCKFLLTSRSRA----------ACNQM 299 (333)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~-~~~g~~vivTTr~~~----------v~~~~ 299 (333)
+. .........+...+......++.+|++| ...+......+. ......+|.+|.... +..++
T Consensus 245 ---g~-~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 245 ---GT-KYRGEFEDRLKKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred ---cc-cccchHHHHHHHHHHHHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 00 0000000111222333334578899999 222222222332 233456666665444 12222
Q ss_pred ccceEecCCCCHHHHHHHHHhhc
Q 046889 300 QAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 300 ~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..+.+...+.++..+++.+..
T Consensus 318 --~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 318 --QPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp --EEEECCCCCHHHHHHHHHHTT
T ss_pred --cEEEeCCCCHHHHHHHHHHHH
Confidence 238999999999999998543
No 110
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=2.8e-05 Score=68.60 Aligned_cols=144 Identities=13% Similarity=0.046 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--cCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--KMFDEVAMAVVSQ-TPSITKIQDEIAGWLGIKE 237 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~ 237 (333)
|.++.++.|...+..++.+.+.++||.|+||||+++.+....... .+.+ ..++..+. ...... .+++.+.+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 345677788888887777899999999999999999998753211 1222 23333222 222222 333444443211
Q ss_pred CCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HHhhcccceEecCCCCHH
Q 046889 238 LPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQAHIVDVRTLTEE 312 (333)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~~~~~~l~~L~~~ 312 (333)
. .+++-++|+|++... ...+.+. +..+...+.+|++|.++. +...+.++.+.+.+++++
T Consensus 79 ~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~ 142 (305)
T 2gno_A 79 E----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPK 142 (305)
T ss_dssp S----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCH
T ss_pred c----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHH
Confidence 1 245679999998754 2233331 222334677888776653 322232337899999999
Q ss_pred HHHHHHHhhc
Q 046889 313 ESWRSAEGKR 322 (333)
Q Consensus 313 e~~~lf~~~a 322 (333)
+....+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887764
No 111
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.12 E-value=1.5e-06 Score=83.74 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----H--
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----I-- 222 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~-- 222 (333)
.++++...+.+|+ +++|+||+|+|||||++.+.+...+... ++. .....++|++. +
T Consensus 356 ~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 433 (578)
T 4a82_A 356 ILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE 433 (578)
T ss_dssp SEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred ceeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHH
Confidence 4445555555667 9999999999999999998866543210 000 01223444321 1
Q ss_pred ----------HHHHHHHHHHhCCC----C------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 223 ----------TKIQDEIAGWLGIK----E------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 223 ----------~~~~~~i~~~l~~~----~------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
.+-..+.++..+.. . ....+ .+.++-.+.+.+-.++-+++|||+.+..|.
T Consensus 434 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 434 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513 (578)
T ss_dssp HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 11112222222221 0 01222 344566788888889999999999877442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....... ..+..+|++||+...... +++.+.|
T Consensus 514 ~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l 548 (578)
T 4a82_A 514 SIIQEALDVL-SKDRTTLIVAHRLSTITH-ADKIVVI 548 (578)
T ss_dssp HHHHHHHHHH-TTTSEEEEECSSGGGTTT-CSEEEEE
T ss_pred HHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 1111111 235679999999988764 4555444
No 112
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.10 E-value=1.2e-05 Score=62.71 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 158 NFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.++|+...+..+...+.. ....-|.|+|+.|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 467888888888777642 222257899999999999999998764
No 113
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.10 E-value=1.5e-05 Score=69.05 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=74.0
Q ss_pred cccchHHHHHHHHH-------Hhh---cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889 158 NFKSRESTMKDIME-------AMK---DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD 227 (333)
Q Consensus 158 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 227 (333)
.++|....++.+.. .+. ......+.|+|+.|+|||+||+.+..... . .. +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~--~~-~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--F--PF-IKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--C--SE-EEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--C--CE-EEEeCHHHh-------
Confidence 45565555444443 332 34456899999999999999999988742 1 11 112222100
Q ss_pred HHHHHhCCCCCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCc-----------h----hhhhccCCC--CCCCcEEEEe
Q 046889 228 EIAGWLGIKELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQ-----------I----ELDRVGIPY--GNDGCKFLLT 289 (333)
Q Consensus 228 ~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~----~~~~l~~~~--~~~g~~vivT 289 (333)
++. .... .......+......++.+|+|||+... . .+..+.-.. ......||.|
T Consensus 102 -----~g~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 102 -----IGF---SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp -----TTC---CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred -----cCC---chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 000 0000 011122233333456889999997542 1 121221111 1123456777
Q ss_pred eCChHHHhh--ccc---ceEecCCCCH-HHHHHHHHh
Q 046889 290 SRSRAACNQ--MQA---HIVDVRTLTE-EESWRSAEG 320 (333)
Q Consensus 290 Tr~~~v~~~--~~~---~~~~l~~L~~-~e~~~lf~~ 320 (333)
|........ +.. ..+.+.++++ ++...++.+
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence 777754332 122 2388888887 666666654
No 114
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.10 E-value=4.6e-05 Score=71.19 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=81.5
Q ss_pred cccccchHHHHHHHHHHh---hcC---------CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAM---KDE---------KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...+.|.++.++.+...+ ... -.+-+.|+||+|+|||+||+.+.+... .. .+.+..+.-..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~---f~~is~~~~~~-- 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VP---FFHISGSDFVE-- 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CC---EEEEEGGGTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC---eeeCCHHHHHH--
Confidence 345778777665555443 211 123588999999999999999998753 11 12232222111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc----------------hhhhhccCC---C-CCCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ----------------IELDRVGIP---Y-GNDG 283 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~---~-~~~g 283 (333)
.............+.......+++|+|||+... ..+..+... + ...+
T Consensus 88 -------------~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 88 -------------LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 000111222333455555568899999998542 012222111 1 1236
Q ss_pred cEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||.||+..+.... .. ...+.+...+.++-.++++.+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 678888888765321 11 1137777777777777776554
No 115
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.09 E-value=1.2e-05 Score=77.64 Aligned_cols=137 Identities=17% Similarity=0.216 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C----eEEEEEeCCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D----EVAMAVVSQTPS-------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~----~~~wv~v~~~~~-------- 221 (333)
.++++...+..++ +++|+|++|+|||||++.+.+..++... + + ......++|++.
T Consensus 358 ~l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 435 (587)
T 3qf4_A 358 VLSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE 435 (587)
T ss_dssp SEEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHH
Confidence 4444554555667 9999999999999999999866543210 0 0 001223444321
Q ss_pred ----------HHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889 222 ----------ITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-- 272 (333)
Q Consensus 222 ----------~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-- 272 (333)
..++ ...++..+. . .....+ -+.++-.+.+.+-.++-+++|||+.+..|.
T Consensus 436 ni~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 436 NLKWGREDATDDEI-VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp HHTTTCSSCCHHHH-HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred HHhccCCCCCHHHH-HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1111 122222211 0 111222 445566788888899999999999876442
Q ss_pred ----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
....... ..|..+|++||+...+. .+++.+.|
T Consensus 515 ~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl 550 (587)
T 3qf4_A 515 EKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKILVL 550 (587)
T ss_dssp HHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEEEE
T ss_pred HHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEEEE
Confidence 1111111 23788999999998876 45555444
No 116
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.08 E-value=7.7e-05 Score=69.40 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=81.3
Q ss_pred cccccchHHHHHHHHHHhh------------cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAMK------------DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...++|.+..++.|...+. ....+-+.|+||.|+|||+||+.+.+... ...++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEeHHH---
Confidence 4567888888888877662 12335789999999999999999998751 11233333221
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-------------hhhhccCCC-----CCCCcE
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-------------ELDRVGIPY-----GNDGCK 285 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~-----~~~g~~ 285 (333)
+... ..+. ...... ..+...-..++.+|+|||+.... ....+.... ...+..
T Consensus 204 -l~~~---~~g~---~~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LVSK---WLGE---SEKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HHhh---hcch---HHHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1100 0111 111111 11222223578999999987430 011121111 123566
Q ss_pred EEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 286 FLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 286 vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
||.||..... ..++ ...+.+...+.++...+|....
T Consensus 274 vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRF-EKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp EEEEESCGGGSCHHHHTTC-CEEEECCCCCHHHHHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhc-ceEEEeCCcCHHHHHHHHHHHH
Confidence 7778876543 2222 1236777777888888887765
No 117
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.08 E-value=1.5e-06 Score=84.03 Aligned_cols=139 Identities=18% Similarity=0.234 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH--HHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI--TKIQD 227 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~--~~~~~ 227 (333)
.++++...+..|+ +++|+|++|+|||||++.+.+...+... ++. .....++|++.. ..+.+
T Consensus 370 ~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 447 (598)
T 3qf4_B 370 VLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447 (598)
T ss_dssp SCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred cccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence 4455555555667 9999999999999999999876543210 000 012234444311 01111
Q ss_pred ---------------HHHHHhCCC----CC------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889 228 ---------------EIAGWLGIK----EL------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--- 272 (333)
Q Consensus 228 ---------------~i~~~l~~~----~~------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--- 272 (333)
+.++..+.. .. ...+ .+.++-.+.+.+-.++-+++||++.+..|.
T Consensus 448 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~ 527 (598)
T 3qf4_B 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527 (598)
T ss_dssp HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 111111110 00 1122 344556788888889999999999877442
Q ss_pred ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
........ .|..+|++||+...... +++.+.++
T Consensus 528 ~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~ 563 (598)
T 3qf4_B 528 KSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLR 563 (598)
T ss_dssp HHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEEC
T ss_pred HHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEE
Confidence 11111111 37889999999988765 55554443
No 118
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.07 E-value=3.4e-05 Score=68.54 Aligned_cols=139 Identities=12% Similarity=0.140 Sum_probs=81.2
Q ss_pred ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
|.....++|++..++.+..++..+.. .++.+.|+.|+|||++++.+.+... ...+.+..+. .... .++..+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHHH
Confidence 34556789999999999999987653 4677778899999999999987653 1122333222 2222 2222111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch---hhhhcc--CCCCCCCcEEEEeeCChHH-----Hhhccc
Q 046889 232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI---ELDRVG--IPYGNDGCKFLLTSRSRAA-----CNQMQA 301 (333)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~--~~~~~~g~~vivTTr~~~v-----~~~~~~ 301 (333)
.+.... .+.+++.++++||+.... ....+. +.....++.+|+||....- ..++
T Consensus 95 ~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~-- 157 (324)
T 3u61_B 95 NFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC-- 157 (324)
T ss_dssp HHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS--
T ss_pred HHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC--
Confidence 110000 001367899999997643 222221 1111235678888876542 2222
Q ss_pred ceEecCCCCHHHHH
Q 046889 302 HIVDVRTLTEEESW 315 (333)
Q Consensus 302 ~~~~l~~L~~~e~~ 315 (333)
..+.+.+++.++-.
T Consensus 158 ~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 158 RVITFGQPTDEDKI 171 (324)
T ss_dssp EEEECCCCCHHHHH
T ss_pred cEEEeCCCCHHHHH
Confidence 24889999987743
No 119
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=8.7e-05 Score=68.39 Aligned_cols=146 Identities=10% Similarity=0.133 Sum_probs=80.4
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
.++.|-++.++.|...+. . ...+-|.++||+|+|||+||+.+.+.... . .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--N---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--C---EEEEehhhhcc--
Confidence 345677777666655542 1 23457999999999999999999988752 1 22333222111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhcc---CCC-CCCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVG---IPY-GNDG 283 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~---~~~-~~~g 283 (333)
.+...+.......+...-...+++|++|++.... .+..+. -.+ ...+
T Consensus 254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 1111111112222333334588999999886320 011111 111 2235
Q ss_pred cEEEEeeCChHHHhh--ccc----ceEecCCCCHHHHHHHHHhhc
Q 046889 284 CKFLLTSRSRAACNQ--MQA----HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 284 ~~vivTTr~~~v~~~--~~~----~~~~l~~L~~~e~~~lf~~~a 322 (333)
..||.||..++.... ... ..|.+..-+.++-.++|+.+.
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 678888877664221 111 226776667777777777554
No 120
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.04 E-value=1.8e-05 Score=69.45 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
.++.+..-+..++ +++|+|++|+|||||++.+.......
T Consensus 24 ~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 24 GINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp THHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4566665566677 99999999999999999999887654
No 121
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.03 E-value=2.8e-05 Score=68.55 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++|.+..++.+...+... ....+.++|++|+|||+||+.+.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 34678888888888877643 135799999999999999999998764
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=8.8e-05 Score=66.91 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=81.5
Q ss_pred cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
...++|.+..++.|...+.. ...+-+.|+||.|+|||+||+.+.+... .. .+.+.. .
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~v~~------~ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSS------S 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CE---EEEEEH------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CC---EEEeeH------H
Confidence 35678888888888776621 1123588999999999999999998763 11 112211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-------------hhhcc-----CCCCCCCcE
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-------------LDRVG-----IPYGNDGCK 285 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~-----~~~~~~g~~ 285 (333)
.+. . .+...........+...-..++.+|+|||+..... ...+. ......+..
T Consensus 119 ~l~----~-----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----S-----KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----S-----CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----h-----hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 1 11111122222222333345789999999874310 11111 111123566
Q ss_pred EEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889 286 FLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 286 vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
||.||..... ..++ ...+.+...+.++..++|.....
T Consensus 190 vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVG 231 (355)
T ss_dssp EEEEESCGGGSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHHT
T ss_pred EEeecCCcccCCHHHHccc-CEEEEeCCcCHHHHHHHHHHHHh
Confidence 6667765532 2222 22377888888888888887653
No 123
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.00 E-value=8.3e-05 Score=66.47 Aligned_cols=142 Identities=10% Similarity=0.061 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------CCCeEEEEEeC---C
Q 046889 163 ESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------MFDEVAMAVVS---Q 218 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~---~ 218 (333)
++..+.+...+..++. +.+.++|+.|+|||++|+.+........ +++. .++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCC
Confidence 5567778887777663 4699999999999999999987764211 1111 111111 0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH
Q 046889 219 TPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA 294 (333)
Q Consensus 219 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~ 294 (333)
..... ..+++.+.+.... ..+++.++|+|++.... ..+.+. +..+..++.+|++|++..
T Consensus 87 ~~~i~-~ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 87 TLGVD-AVREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SBCHH-HHHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCHH-HHHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 11111 1122222221100 12467899999987542 222221 222334677788887764
Q ss_pred -HHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889 295 -ACNQMQAH--IVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 295 -v~~~~~~~--~~~l~~L~~~e~~~lf~~~a 322 (333)
+...+.++ .+.+.++++++....+.+..
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 22222222 38999999999998887764
No 124
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.97 E-value=5.3e-05 Score=66.60 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD--------------EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..++|.+..++.+...+.. .....+.|+|+.|+|||+||+.+....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999888888776643 223468899999999999999998876
No 125
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00016 Score=65.73 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=81.1
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
..++.|-++.++.|.+.+.- ...+-|.++||+|+|||.||+.+.+.... . .+.+..+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--K---FIRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--E---EEEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--C---ceEEEhHHhhc-
Confidence 34456777777766655421 13456899999999999999999988752 2 22333222111
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch------------h----hhhcc---CC-CCCC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI------------E----LDRVG---IP-YGND 282 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~---~~-~~~~ 282 (333)
.+...+...+...+...-...+++|++|++.... . +..+. -. ....
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 1111111222222333334578999999986321 0 11111 11 1233
Q ss_pred CcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889 283 GCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 283 g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+..||.||..++.... .. ...+.+..-+.++-.++|+.+.
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 5567778876654211 11 2237777777888888887654
No 126
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.96 E-value=8.1e-06 Score=82.20 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH--HhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA--KEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR 253 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 253 (333)
.+++|+||||+|||||++.+.... ...+.|.+.--..++.- ..++..++..+ ............+...
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~-------d~i~~~ig~~d~l~~~lStf~~e~~~~a~i 735 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIV-------DCILARVGAGDSQLKGVSTFMAEMLETASI 735 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECC-------SEEEEECC---------CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHH-------HHHHHhcCchhhHHHhHhhhHHHHHHHHHH
Confidence 499999999999999999984221 11122221111111000 00111111110 0111222233344455
Q ss_pred H--ccCceEEEEeCCCCchhh-------hhccCCCC-CCCcEEEEeeCChHHHh
Q 046889 254 I--EKQRVLVILDDLWVQIEL-------DRVGIPYG-NDGCKFLLTSRSRAACN 297 (333)
Q Consensus 254 l--~~k~~LlVlDdv~~~~~~-------~~l~~~~~-~~g~~vivTTr~~~v~~ 297 (333)
+ ..++-|++||++.+..+. ..+...+. ..|+.+|++||+.+++.
T Consensus 736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGG
T ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHH
Confidence 5 568899999999765331 11111122 24889999999988754
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.95 E-value=7.6e-06 Score=63.77 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=31.5
Q ss_pred ccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..++|++..++.+...+.. ....-|.|+|+.|+|||++|+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4567888887777776642 222257899999999999999887643
No 128
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.95 E-value=5.2e-05 Score=71.27 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=84.3
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
...+.|.+..++.|...+.. ....-+.|+|+.|+|||+||+.+.+... .. .+.+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~---fv~vn~------ 271 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLING------ 271 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SE---EEEEEH------
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CC---EEEEEc------
Confidence 34578888888888776642 2334689999999999999999987642 11 122221
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc----------------hhhhhccCCC-CCCCcE
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ----------------IELDRVGIPY-GNDGCK 285 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~-~~~g~~ 285 (333)
..+. . .............+......++.+|+|||+... ..+..+.-.. ...+..
T Consensus 272 ~~l~----~-----~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 272 PEIM----S-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp HHHH----T-----SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred hHhh----h-----hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1111 0 111111222333344455567889999998321 0111111111 222556
Q ss_pred EEEeeCChHH-Hhhccc-----ceEecCCCCHHHHHHHHHhhcc
Q 046889 286 FLLTSRSRAA-CNQMQA-----HIVDVRTLTEEESWRSAEGKRR 323 (333)
Q Consensus 286 vivTTr~~~v-~~~~~~-----~~~~l~~L~~~e~~~lf~~~a~ 323 (333)
||.||+.... -..+.. ..+.+...+.++-.++|..++.
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 6667776533 111111 1278888899999999987753
No 129
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00011 Score=67.73 Aligned_cols=146 Identities=13% Similarity=0.131 Sum_probs=79.3
Q ss_pred cccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
...+.|-++.++.|...+. . ...+-|.++||+|+|||+||+.+.+.... . .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--T---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGGCS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--C---EEEEehhhhhh-
Confidence 3456677777777765542 1 23457999999999999999999988752 1 22232222110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHH-HHHHccCceEEEEeCCCCc-------h-----h----hhhcc---CCC-CC
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLL-CKRIEKQRVLVILDDLWVQ-------I-----E----LDRVG---IPY-GN 281 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~-------~-----~----~~~l~---~~~-~~ 281 (333)
.+.. ........+ ...-...+++|++|++... . . +..+. -.+ ..
T Consensus 254 --------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 --------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp --------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred --------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 1111 111222222 2233357899999988521 0 0 11111 111 22
Q ss_pred CCcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889 282 DGCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 282 ~g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
.+..||.||..++.... .. ...+.+..-+.++-.++|+.+.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 35566778877654221 11 1126777777777777776554
No 130
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00014 Score=66.88 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=35.7
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++.|-+..++.|...+.- ...+-+.++||+|+|||+||+.+.+...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566777777776655421 2345689999999999999999998875
No 131
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00024 Score=65.57 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=79.5
Q ss_pred cccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH
Q 046889 158 NFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK 224 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 224 (333)
.+.|-++.++.|.+.+. . ...+-|.++||.|+|||+||+.+.+.... . .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--~---fi~vs~s~L~s--- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--T---FIRVIGSELVQ--- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGGCC---
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--C---eEEEEhHHhhc---
Confidence 45677777777665442 1 23567899999999999999999988752 2 22232222110
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhcc---CCC-CCCCc
Q 046889 225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVG---IPY-GNDGC 284 (333)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~---~~~-~~~g~ 284 (333)
.+...+...+...+...-...+++|++|++.... .+..+. -.+ ...+.
T Consensus 282 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 282 ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 1111111122222333334578999999886320 011111 111 22255
Q ss_pred EEEEeeCChHHHh----hcc--cceEecCCCCHHHHHHHHHhhc
Q 046889 285 KFLLTSRSRAACN----QMQ--AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 285 ~vivTTr~~~v~~----~~~--~~~~~l~~L~~~e~~~lf~~~a 322 (333)
.||.||...+... +-+ ...+.+..-+.++-.++|+.+.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 6677776655311 111 2237777777888888887654
No 132
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.89 E-value=2.7e-05 Score=71.73 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHccCc--eEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQR--VLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k~--~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+...-.|...|..++ -+|+|||+.+..+. ..+..... .|..||++||+..++.. ++.++.|
T Consensus 300 e~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~-~d~i~~l 368 (415)
T 4aby_A 300 ELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAAR-AHHHYKV 368 (415)
T ss_dssp HHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhh-cCeEEEE
Confidence 334445666676777 89999999987542 22212223 37889999999998754 5555444
No 133
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.88 E-value=7.5e-06 Score=77.96 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=73.6
Q ss_pred ccchHHHHHHHHH-HhhcCCceEEEEEcCCCCcHHHHHHHH--HHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 046889 159 FKSRESTMKDIME-AMKDEKVSIIGICGRGGIGKTTLVKEI--QKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI 235 (333)
Q Consensus 159 ~~gr~~~~~~l~~-~l~~~~~~vi~I~G~~G~GKTtLa~~v--~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 235 (333)
+.+....++++.. .+..++ +++|+|++|+|||||++.+ .+..+.. ...+++...+ ..... ......++.
T Consensus 21 ~~~g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~--~~~~~-~~~~~~~g~ 92 (525)
T 1tf7_A 21 MRTMIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE--TPQDI-IKNARSFGW 92 (525)
T ss_dssp ECCCCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS--CHHHH-HHHHGGGTC
T ss_pred ccCCchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC--CHHHH-HHHHHHcCC
Confidence 3334456777776 677777 9999999999999999994 4554432 2355655433 21211 111111111
Q ss_pred C----------------C----C---CCCCHHHHHHHHHHHHc-cCceEEEEeCCCCch-----------hhhhccCCCC
Q 046889 236 K----------------E----L---PDNDELVRASLLCKRIE-KQRVLVILDDLWVQI-----------ELDRVGIPYG 280 (333)
Q Consensus 236 ~----------------~----~---~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~-----------~~~~l~~~~~ 280 (333)
. . . ...........+...|. .++-+++||.+.... .+..+...+.
T Consensus 93 ~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~ 172 (525)
T 1tf7_A 93 DLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK 172 (525)
T ss_dssp CHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 0 0 0 01113344555555554 577899999986421 1222222222
Q ss_pred CCCcEEEEeeCChHH
Q 046889 281 NDGCKFLLTSRSRAA 295 (333)
Q Consensus 281 ~~g~~vivTTr~~~v 295 (333)
..|..||+|||+...
T Consensus 173 ~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 173 QIGATTVMTTERIEE 187 (525)
T ss_dssp HHTCEEEEEEECSSS
T ss_pred HCCCEEEEEecCCCC
Confidence 348889999999765
No 134
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.88 E-value=8.6e-06 Score=70.39 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=32.5
Q ss_pred ccccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMK---D---------EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++|.+..++.+...+. . ....-+.|+|+.|+|||+||+.+.+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 457777666555554432 1 1122478999999999999999998764
No 135
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.87 E-value=2.1e-05 Score=68.44 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=61.9
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------CCeEEEEEeCCCCCHHHHHH---------------HH
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------FDEVAMAVVSQTPSITKIQD---------------EI 229 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------f~~~~wv~v~~~~~~~~~~~---------------~i 229 (333)
+..+. ++.|+|++|+|||||+..+......... -..+.++..... ...+.. .+
T Consensus 27 l~~G~--i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~--~~~~~~r~~~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 27 MVAGT--VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAV 102 (279)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccCCC--EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC--HHHHHHHHHHHHhhcChhhhhhc
Confidence 44556 9999999999999999999876553211 123445554443 222211 11
Q ss_pred HHHhCCCCC-----CCCCHHHHHHHHHHHHccCceEEEEeCCCC--chhh------hhc---cCCC-CCCCcEEEEeeCC
Q 046889 230 AGWLGIKEL-----PDNDELVRASLLCKRIEKQRVLVILDDLWV--QIEL------DRV---GIPY-GNDGCKFLLTSRS 292 (333)
Q Consensus 230 ~~~l~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~------~~l---~~~~-~~~g~~vivTTr~ 292 (333)
++.+.+... ...+... ...+...+ .+.-+||||.+.. ..+- ..+ ...+ ...|+.||+++|.
T Consensus 103 ~~~l~l~~~~~~~~~~ls~g~-~~~i~~l~-~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 103 ADGLLIQPLIGSLPNIMAPEW-FDGLKRAA-EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp HHHEEECCCTTSCCCTTSHHH-HHHHHHHH-TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cCceEEeecCCCCcccCCHHH-HHHHHHhc-CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 233332211 1112222 33344444 3578999999876 2111 111 1111 2338899999998
Q ss_pred hHHH
Q 046889 293 RAAC 296 (333)
Q Consensus 293 ~~v~ 296 (333)
....
T Consensus 181 ~~~~ 184 (279)
T 1nlf_A 181 SKGA 184 (279)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 136
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.87 E-value=1.9e-05 Score=78.60 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+.-.|...|..+ +-++|||++.+..+... +...+...|..||++||+.+++ .++++.+.|
T Consensus 735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 44556677777775 69999999987754222 2222233478899999999998 567777777
No 137
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.7e-06 Score=80.73 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
.+...+..++ +++|+|++|+|||||++.+.+.....
T Consensus 130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCccccc
Confidence 4455555566 89999999999999999999876543
No 138
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.86 E-value=8.3e-06 Score=80.00 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHccC---ceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQ---RVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+.-.|.+.|..+ +-+|+||++.+..| +..+.......|..||++||+..++.. +++.+.|
T Consensus 548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~i~~l 618 (670)
T 3ux8_A 548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT-ADYIIDL 618 (670)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-CCEEEEe
Confidence 44566778888654 46999999987754 222222223347889999999998754 5655555
No 139
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.85 E-value=1.1e-05 Score=79.80 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-hh-cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK-EK-KMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR 253 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 253 (333)
.+++|+||||+|||||++.+..... .+ +.|.......++--.. ++..++..+ ............+...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-------i~~~~~~~d~l~~g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-------IYTRIGASDDLAGGKSTFMVEMEEVALI 649 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-------EEEECCC------CCSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH-------hhccCCHHHHHHhcccHHHHHHHHHHHH
Confidence 3899999999999999999987642 11 2221100000110000 000111100 0011122223345555
Q ss_pred H--ccCceEEEEeCC---CCchhhhh----ccCCCCCCCcEEEEeeCChHHHhh
Q 046889 254 I--EKQRVLVILDDL---WVQIELDR----VGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 254 l--~~k~~LlVlDdv---~~~~~~~~----l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
+ ..++-|++||++ .+..|-.. +.-.+...|+.+|++||+.+.+..
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 703 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 6 678999999999 65544211 111111258899999999988653
No 140
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.85 E-value=8.5e-06 Score=64.63 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+|....++.+...+..++ +++|+|++|+|||||++.+.+..
T Consensus 17 ~g~~~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC
Confidence 344445555555555666 99999999999999999999876
No 141
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00023 Score=65.07 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=78.4
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889 157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT 223 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 223 (333)
.++-|-++.++.|.+.+. . ...+-|.++||.|+|||.||+.+.+.... .| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--TF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--EE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC--CE---EEEEHHHhhh--
Confidence 345566777666655442 1 23457999999999999999999988752 21 2222221110
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHH-HHHHHccCceEEEEeCCCCch----------------hhhhccC---CC-CCC
Q 046889 224 KIQDEIAGWLGIKELPDNDELVRASL-LCKRIEKQRVLVILDDLWVQI----------------ELDRVGI---PY-GND 282 (333)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~---~~-~~~ 282 (333)
.+.. ........ +...-...+++|++|++.... .+..+.. .+ ...
T Consensus 255 -------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 -------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1111 11122222 223334578999999876320 0111110 11 223
Q ss_pred CcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889 283 GCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 283 g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a 322 (333)
+..||.||..++.... +. ...|.+..-+.++-.++|+.+.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 5567778877765321 11 1126666666777777777554
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.81 E-value=0.00011 Score=64.50 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ 257 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 257 (333)
.+++++|++|+||||++..+.......... .+.++... ......+.+.......+.+.....+...+...+. .+ .+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~-~~ 182 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF-SE 182 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-GG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-cC
Confidence 499999999999999999999887653332 22333322 2223333444444455553222233444444444 33 45
Q ss_pred ceEEEEeC
Q 046889 258 RVLVILDD 265 (333)
Q Consensus 258 ~~LlVlDd 265 (333)
.-++++|-
T Consensus 183 ~dlvIiDT 190 (296)
T 2px0_A 183 YDHVFVDT 190 (296)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 56889993
No 143
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.79 E-value=1.8e-05 Score=75.37 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=63.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------------CC--C
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-------------EL--P 239 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-------------~~--~ 239 (333)
.+. +++|+|++|+|||||++.++......+. ..+++. .+. ....+...+ ..++.. .. .
T Consensus 280 ~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~G~--~vi~~~-~ee-~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~ 352 (525)
T 1tf7_A 280 KDS--IILATGATGTGKTLLVSRFVENACANKE--RAILFA-YEE-SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPE 352 (525)
T ss_dssp SSC--EEEEEECTTSSHHHHHHHHHHHHHTTTC--CEEEEE-SSS-CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGG
T ss_pred CCc--EEEEEeCCCCCHHHHHHHHHHHHHhCCC--CEEEEE-EeC-CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccc
Confidence 455 9999999999999999999987654321 223333 232 233333222 222211 00 1
Q ss_pred CCCHH-HHHHHHHHHHccCceEEEEeCCCCchhhh-----------hccCCCCCCCcEEEEeeCCh
Q 046889 240 DNDEL-VRASLLCKRIEKQRVLVILDDLWVQIELD-----------RVGIPYGNDGCKFLLTSRSR 293 (333)
Q Consensus 240 ~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-----------~l~~~~~~~g~~vivTTr~~ 293 (333)
..+.. .+...+...+..++-+||+| +.+..+.. .+.......|..||+|||+.
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 12333 34445666677788999999 64432221 22122234488899999987
No 144
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.79 E-value=3.6e-05 Score=80.71 Aligned_cols=140 Identities=15% Similarity=0.238 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC--------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-------- 221 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-------- 221 (333)
.++++...+.+++ +++|+|++|+|||||++.+.+...+... ++. .....++|++.
T Consensus 405 vL~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 482 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482 (1284)
T ss_dssp SEEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHH
T ss_pred ceecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHH
Confidence 4555555555677 9999999999999999999866543210 000 01234455431
Q ss_pred ----------HHHHHH--------HHHHHhCCC-------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc
Q 046889 222 ----------ITKIQD--------EIAGWLGIK-------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV 275 (333)
Q Consensus 222 ----------~~~~~~--------~i~~~l~~~-------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l 275 (333)
...+.+ +.+..+... .....+ .+.++-.|.+.+-.++-+++|||+.+..|-..-
T Consensus 483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~ 562 (1284)
T 3g5u_A 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562 (1284)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 111111 112222110 011222 345566788888889999999999877542211
Q ss_pred -----cCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889 276 -----GIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR 307 (333)
Q Consensus 276 -----~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~ 307 (333)
.+.....|..+|++||+...... ++..+.|+
T Consensus 563 ~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~ 598 (1284)
T 3g5u_A 563 AVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFD 598 (1284)
T ss_dssp HHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEE
Confidence 01111237889999999988765 45555443
No 145
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.78 E-value=3.6e-05 Score=78.41 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-----EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCH-HH-HHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-----VAMAVVSQTPSITKIQDEIAGWLGIKELP---DNDE-LV-RAS 248 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-----~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~-~~-~~~ 248 (333)
.+++|+||||+|||||++.+ +......+..+ ...+.+.+ .|+..++..+.. .... .+ ...
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d---------~I~~rig~~d~~~~~~stf~~em~~~ 859 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPID---------RVFTRLGASDRIMSGESTFFVELSET 859 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCS---------BEEEECC---------CHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHH---------HHHHHcCCHHHHhhchhhhHHHHHHH
Confidence 59999999999999999999 55433222110 11111110 011111111100 0111 11 112
Q ss_pred HHHHHHccCceEEEEeCCCCchhh-------hhccCCCCC-CCcEEEEeeCChHHHhhcccc
Q 046889 249 LLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPYGN-DGCKFLLTSRSRAACNQMQAH 302 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~ 302 (333)
.+...+..++-|++||++....+. ..+...+.. .|+.+|++||+.+.+..++..
T Consensus 860 a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 860 ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 334445678899999999654221 111112222 388999999999987765543
No 146
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.77 E-value=6.1e-05 Score=75.70 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh--hcCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE--KKMFDE--VAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLC 251 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~~--~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 251 (333)
.+++|+||||+|||||++.+....-. ...|.. ...+.+.. .++..++..+ ........-...+.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d---------~i~~~ig~~d~l~~~~stfs~em~~~~ 744 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD---------GIFTRMGAADNIYKGRSTFMEELTDTA 744 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---------EEEEEC----------CCHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---------HHHHhCChHHHHHHhHHHhhHHHHHHH
Confidence 49999999999999999988643211 111211 11111000 0011111100 01112221222222
Q ss_pred HHH--ccCceEEEEeCCCCchhhh-------hccCCC-CCCCcEEEEeeCChHHHh
Q 046889 252 KRI--EKQRVLVILDDLWVQIELD-------RVGIPY-GNDGCKFLLTSRSRAACN 297 (333)
Q Consensus 252 ~~l--~~k~~LlVlDdv~~~~~~~-------~l~~~~-~~~g~~vivTTr~~~v~~ 297 (333)
..+ ..++-|++||++.+..+.. .+...+ ...|+.||++||+.+++.
T Consensus 745 ~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 745 EIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 222 4688899999997664321 111112 235899999999988754
No 147
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.75 E-value=8e-05 Score=65.65 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 158 NFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.++|+...+..+...+.. .....|.|+|+.|+|||++|+.+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467888888777776643 222367899999999999999998764
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.73 E-value=8.4e-05 Score=66.84 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH--hhc-CC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------C-CCCC---
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK--EKK-MF-DEVAMAVVSQTPSITKIQDEIAGWLGIKE--------L-PDND--- 242 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~--~~~-~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--------~-~~~~--- 242 (333)
.++.|+|++|+|||||+..+..... +.. .. ..++|+.....+.... +..++..++... . ...+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 3999999999999999999988752 111 11 2347776655443333 333444443320 0 0111
Q ss_pred HHHHHHHHHHHHc------cCceEEEEeCCCCchhh---------------hhcc---CCC-CCCCcEEEEeeCChH
Q 046889 243 ELVRASLLCKRIE------KQRVLVILDDLWVQIEL---------------DRVG---IPY-GNDGCKFLLTSRSRA 294 (333)
Q Consensus 243 ~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~---------------~~l~---~~~-~~~g~~vivTTr~~~ 294 (333)
..+....+...+. .+.-+||+|.+....+. ..+. ... ...++.||+|+|...
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 1223334444454 46789999998765322 1111 111 223788999998654
No 149
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.71 E-value=0.00012 Score=72.80 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=79.8
Q ss_pred ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD 227 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 227 (333)
..++|.+..++.+...+... ....+.++||.|+|||+||+.+...... .-...+.+.++.-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechhcccc-----
Confidence 45789998888887777531 2236999999999999999999987631 1122334444322110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCch--hhhhc-------cCC------CCCCCcEEEEeeC
Q 046889 228 EIAGWLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQI--ELDRV-------GIP------YGNDGCKFLLTSR 291 (333)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--~~~~l-------~~~------~~~~g~~vivTTr 291 (333)
... . ...+...+. ....+|+|||+.... ....+ .+. .....+.||+||.
T Consensus 564 ----------~~~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ----------HST-S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------CCC-C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------ccc-c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 000 0 011122222 234599999996441 11111 110 0112567888887
Q ss_pred C-----------------hHHHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889 292 S-----------------RAACNQMQAHIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 292 ~-----------------~~v~~~~~~~~~~l~~L~~~e~~~lf~~~a 322 (333)
. +++..++. ..+.+.+|+.++...++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHHH
Confidence 3 22233332 358899999999888876543
No 150
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.71 E-value=0.00047 Score=65.75 Aligned_cols=47 Identities=30% Similarity=0.404 Sum_probs=33.9
Q ss_pred ccccchHHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMK------DEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++|-+...+.+...+. .....++.|+||+|+|||||++.+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346777766666544332 11234899999999999999999998874
No 151
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.71 E-value=3.4e-05 Score=69.02 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=40.7
Q ss_pred cccccccchHHHHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDE-----KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.....++|.+..++.+...+..+ ....+.|+||+|+|||||++.+.+...
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567889988999888887643 235799999999999999999998764
No 152
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.70 E-value=0.00012 Score=61.91 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=64.6
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCC
Q 046889 174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPD 240 (333)
Q Consensus 174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~ 240 (333)
..+. ++.|+|++|+|||||+..+........ .-...+|+..........+ ..++..++... ...
T Consensus 22 ~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 22 ETGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp ETTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEEC
T ss_pred cCCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEec
Confidence 3455 999999999999999999987532111 1245677766654444333 34445555421 012
Q ss_pred CCHHH---HHHHHHHHHc-cCceEEEEeCCCCchh---------------hhhcc---CCC-CCCCcEEEEeeCChH
Q 046889 241 NDELV---RASLLCKRIE-KQRVLVILDDLWVQIE---------------LDRVG---IPY-GNDGCKFLLTSRSRA 294 (333)
Q Consensus 241 ~~~~~---~~~~l~~~l~-~k~~LlVlDdv~~~~~---------------~~~l~---~~~-~~~g~~vivTTr~~~ 294 (333)
.+..+ ....+.+.+. .+.-+||+|++....+ ...+. ... ...|+.||+|+|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 22222 2333555554 3678999998865421 11111 111 223888999999654
No 153
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.69 E-value=4.8e-05 Score=69.02 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH--HhCCCCCCCCCHHHHHHHHHHHHcc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG--WLGIKELPDNDELVRASLLCKRIEK 256 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (333)
.+++|+|++|+|||||++.+.+...... -..+.++.-+-....... ..++. .++. .. ......+...|..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~-~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~---~~---~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAALRE 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHS-CCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCSHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCC-CcEEEEecccHhhhhccC-ceEEEeeecCC---CH---HHHHHHHHHHhhh
Confidence 4899999999999999999998776431 112222221100000000 00000 0111 11 1224567888888
Q ss_pred CceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHH
Q 046889 257 QRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 257 k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v 295 (333)
.+-+|++|++.+...+...... ...|..|+.|+|..+.
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~-~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRA-AETGHLVFGTLHTNTA 246 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH-HTTTCEEEECCCCCSH
T ss_pred CcCEEEECCCCCHHHHHHHHHH-HhcCCEEEEEECcchH
Confidence 8899999999866554433111 2347779999998764
No 154
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.69 E-value=6.7e-05 Score=64.62 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=32.2
Q ss_pred ccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++|.+..+..+...+.. .....+.|+|+.|+|||+||+.+.+...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3567888777777655532 1223678999999999999999987653
No 155
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.66 E-value=0.00049 Score=59.60 Aligned_cols=121 Identities=8% Similarity=0.071 Sum_probs=65.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-ccCce
Q 046889 181 IGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRI-EKQRV 259 (333)
Q Consensus 181 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~ 259 (333)
+.|+||+|+|||||++.+.+.... ..+.+..+.-.+. ...........+.+.. ...++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987542 2233332211100 0000111122222222 34678
Q ss_pred EEEEeCCCCchh-------------hhhccC---C-CCCCCcEEEEeeCChHHHhhc--c----cceEecCCCCHHHHHH
Q 046889 260 LVILDDLWVQIE-------------LDRVGI---P-YGNDGCKFLLTSRSRAACNQM--Q----AHIVDVRTLTEEESWR 316 (333)
Q Consensus 260 LlVlDdv~~~~~-------------~~~l~~---~-~~~~g~~vivTTr~~~v~~~~--~----~~~~~l~~L~~~e~~~ 316 (333)
++++|++..... ...+.. . .......++.+|..+++.... . ...+.+..-+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999864210 011100 0 111244566778777653211 1 2227788888888888
Q ss_pred HHHhhc
Q 046889 317 SAEGKR 322 (333)
Q Consensus 317 lf~~~a 322 (333)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887654
No 156
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.66 E-value=3.7e-05 Score=63.87 Aligned_cols=128 Identities=15% Similarity=0.088 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCeEEE-----------EEeCCCCCHHHH--
Q 046889 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MFDEVAM-----------AVVSQTPSITKI-- 225 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~w-----------v~v~~~~~~~~~-- 225 (333)
+|....++.+ ..++ +++|+|+||+|||||++.+.+. .+.. ....... .++++.+ .+.+
T Consensus 10 ~g~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-~enl~~ 81 (208)
T 3b85_A 10 LGQKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-NEKIDP 81 (208)
T ss_dssp HHHHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CT
T ss_pred HhHHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-HHHHHH
Confidence 4444555554 5677 8999999999999999999988 5432 2221101 0112211 0111
Q ss_pred -HHHHHHHhCCCCCCCCCHHHHHH---------HHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEEeeCCh
Q 046889 226 -QDEIAGWLGIKELPDNDELVRAS---------LLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLLTSRSR 293 (333)
Q Consensus 226 -~~~i~~~l~~~~~~~~~~~~~~~---------~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~vivTTr~~ 293 (333)
.......+.. ........+... .+.+.|..++-+|+||++.+. ..+..+.... ..|..|| +||+.
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~~g~tii-vtHd~ 158 (208)
T 3b85_A 82 YLRPLHDALRD-MVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-GFGSKMV-VTGDI 158 (208)
T ss_dssp TTHHHHHHHTT-TSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred HHHHHHHHHHH-hccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-cCCCEEE-EECCH
Confidence 0011111111 001111111111 133445567889999999876 2233332333 3477888 99998
Q ss_pred HHHhh
Q 046889 294 AACNQ 298 (333)
Q Consensus 294 ~v~~~ 298 (333)
..+..
T Consensus 159 ~~~~~ 163 (208)
T 3b85_A 159 TQVDL 163 (208)
T ss_dssp -----
T ss_pred HHHhC
Confidence 86553
No 157
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.66 E-value=7.5e-05 Score=68.27 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=51.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh----hcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHHH-
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKE----KKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPDNDELV- 245 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~- 245 (333)
++.|+|++|+|||||+..++-.... ...-...+|+.....+.... +..++..++... ....+...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~~~~ 258 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNADHQ 258 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCChHHH
Confidence 9999999999999999976533211 11224567777665555443 344666666521 01122222
Q ss_pred --HHHHHHHHHc-cCceEEEEeCCCC
Q 046889 246 --RASLLCKRIE-KQRVLVILDDLWV 268 (333)
Q Consensus 246 --~~~~l~~~l~-~k~~LlVlDdv~~ 268 (333)
....+...+. .+.-+||+|.+..
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHhcCCceEEecchhh
Confidence 2233333333 3678999998754
No 158
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.65 E-value=9.9e-05 Score=65.17 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 162 RESTMKDIMEAMKDE---KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 162 r~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+...+..+..++... ....+.|+|+.|+|||+||..+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555555666541 134788999999999999999998775
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.65 E-value=0.00076 Score=60.50 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR 253 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~ 253 (333)
.++.|.|++|+|||||+..+........ ..++|++.....+.. .+.+++... ....+.++....+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 4999999999999999999988765422 245677766655543 455666531 1233455555555555
Q ss_pred Hc-cCceEEEEeCCC
Q 046889 254 IE-KQRVLVILDDLW 267 (333)
Q Consensus 254 l~-~k~~LlVlDdv~ 267 (333)
+. .+.-++|+|.+.
T Consensus 135 ~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHTSCCSEEEEECTT
T ss_pred hhhcCCCeEEehHhh
Confidence 54 456799999764
No 160
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.63 E-value=0.00018 Score=71.52 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+++|+||||+|||||++.+....
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 499999999999999999998753
No 161
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.62 E-value=6.8e-05 Score=78.62 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC---------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP--------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~--------- 220 (333)
.++++...+..|+ +++|+|++|+|||||++.+.+..++... ++. .....++|++
T Consensus 1048 ~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 1125 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125 (1284)
T ss_dssp SBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHH
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHH
Confidence 4555665566677 9999999999999999999876543210 000 0012233332
Q ss_pred -----------CHHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -----------SITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+... ....++..+.. .....+ .+.++-.+.+.|-.++-+|+||++.+..|.
T Consensus 1126 Ni~~~~~~~~~~~~~-i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1126 NIAYGDNSRVVSYEE-IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp HHTCCCSSCCCCHHH-HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred HHhccCCCCCCCHHH-HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 1112 22222222211 001223 445566788888899999999999877542
Q ss_pred hh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 273 DR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 273 ~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.. .... ...|+.||++||+.+.... +++.+.|
T Consensus 1205 ~~~~~i~~~l~~-~~~~~tvi~isH~l~~i~~-~dri~vl 1242 (1284)
T 3g5u_A 1205 ESEKVVQEALDK-AREGRTCIVIAHRLSTIQN-ADLIVVI 1242 (1284)
T ss_dssp HHHHHHHHHHHH-HSSSSCEEEECSCTTGGGS-CSEEEEE
T ss_pred HHHHHHHHHHHH-hCCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 21 1111 1237789999999987654 4554433
No 162
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.62 E-value=2.9e-05 Score=66.22 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
|....++.+...+..+. +|+|+|++|+|||||++.+.+..
T Consensus 10 ~~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence 44456777777766665 99999999999999999998765
No 163
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.60 E-value=0.0009 Score=59.46 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
.+..+++|+|++|+|||||++.+.+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345699999999999999999999887654
No 164
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.59 E-value=3.1e-05 Score=64.86 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.-++.+...+..++ +++|+||+|+|||||++.+.+..
T Consensus 11 ~~l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCC--CEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 34566777777777 89999999999999999998865
No 165
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.59 E-value=0.00022 Score=71.62 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 243 ELVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 243 ~~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
-+.++-.|.+.|..+ +-|+|||++.+..+... +...+...|..||++||+.+++.. +++.+.|
T Consensus 809 GErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivL 880 (916)
T 3pih_A 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDL 880 (916)
T ss_dssp HHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEe
Confidence 345566788888654 57999999987754222 212222347789999999998765 5666666
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.55 E-value=9.2e-05 Score=61.37 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 164 STMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 164 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..++.|...+.. +...+++|+|++|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455556555542 34469999999999999999999988764
No 167
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.54 E-value=6.9e-05 Score=78.79 Aligned_cols=131 Identities=13% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC---------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP--------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~--------- 220 (333)
.++++...+..|+ .++|+|++|+|||||++.+.+...+... ++. ....+|+|++
T Consensus 433 vL~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e 510 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE 510 (1321)
T ss_dssp SEEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred eeeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhH
Confidence 3455555555677 9999999999999999999876543211 000 0123445543
Q ss_pred ---------CHHHHHH--------HHHHHhCCC--------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhh-
Q 046889 221 ---------SITKIQD--------EIAGWLGIK--------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDR- 274 (333)
Q Consensus 221 ---------~~~~~~~--------~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~- 274 (333)
+.+++.+ +.+..+... +..-...+.++-.|.+.+-.++-+++|||+.+..|-..
T Consensus 511 NI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te 590 (1321)
T 4f4c_A 511 NISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590 (1321)
T ss_dssp HHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH
T ss_pred HHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHH
Confidence 2222221 122222111 11122245566778899989999999999987644211
Q ss_pred -----ccCCCCCCCcEEEEeeCChHHHhh
Q 046889 275 -----VGIPYGNDGCKFLLTSRSRAACNQ 298 (333)
Q Consensus 275 -----l~~~~~~~g~~vivTTr~~~v~~~ 298 (333)
..... ..|..+|++||.......
T Consensus 591 ~~i~~~l~~~-~~~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 591 GIVQQALDKA-AKGRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp HHHHHHHHHH-HTTSEEEEECSCTTTTTT
T ss_pred HHHHHHHHHH-hCCCEEEEEcccHHHHHh
Confidence 11111 126778888888776543
No 168
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.53 E-value=0.00036 Score=69.91 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+.+.-.|...|..+ +-++|||++.+..+... +.......|..||++||+.+++. .+++.+.|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL 920 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEE
Confidence 44556677888764 48999999987754222 21222334788999999999875 56666666
No 169
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.52 E-value=0.00056 Score=60.15 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCC---CCCCCHHHH-HHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKE---LPDNDELVR-ASLLC 251 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l~ 251 (333)
..+++|+|++|+||||++..+.......+. .+.++.. ..+.. .+.+...++.++.+. ....+.... ...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~--kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGK--SVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCC--EEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 459999999999999999999988765321 2333332 22222 222344556666531 122233332 33455
Q ss_pred HHHccCceEEEEeCCC
Q 046889 252 KRIEKQRVLVILDDLW 267 (333)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (333)
..+..+.-++++|.+-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566667789999764
No 170
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.51 E-value=0.00033 Score=69.94 Aligned_cols=147 Identities=11% Similarity=0.112 Sum_probs=78.9
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889 156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI 222 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 222 (333)
...++|.+..++.|..++.. .....+.|+|++|+|||||++.+.+... .. .+.+..+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~---~i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CE---EEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--Cc---EEEEEch-----
Confidence 34567877777776666532 2234799999999999999999987653 11 1222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhccCCC-CCCCcE
Q 046889 223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVGIPY-GNDGCK 285 (333)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~-~~~g~~ 285 (333)
.+. + .............+.......+.++++||+.... .+..+.-.. ...+..
T Consensus 273 -~l~-------~--~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 273 -EIM-------S--KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -HHS-------S--SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -Hhh-------h--hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 110 0 0011111112223333344578899999984221 111111111 122556
Q ss_pred EEEeeCChHHHhh-cc---c--ceEecCCCCHHHHHHHHHhhc
Q 046889 286 FLLTSRSRAACNQ-MQ---A--HIVDVRTLTEEESWRSAEGKR 322 (333)
Q Consensus 286 vivTTr~~~v~~~-~~---~--~~~~l~~L~~~e~~~lf~~~a 322 (333)
+|.||+....... +. . ..+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6777776543211 11 1 226777788888888887654
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.47 E-value=0.0018 Score=58.11 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI 254 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l 254 (333)
++.|.|++|+|||||+..+.......+ ..++|++.....+.. .+..++... ....+.++....+....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 899999999999999999886654322 356788777665542 245566431 11234455444444444
Q ss_pred cc-CceEEEEeCCCC
Q 046889 255 EK-QRVLVILDDLWV 268 (333)
Q Consensus 255 ~~-k~~LlVlDdv~~ 268 (333)
.. +.-+||+|.+..
T Consensus 136 ~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 136 RSGALDIIVIDSVAA 150 (349)
T ss_dssp TTTCCSEEEEECGGG
T ss_pred hcCCCCEEEEcChHh
Confidence 33 567999998754
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.47 E-value=6.9e-05 Score=62.09 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=23.8
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+..++ +++|+|++|+|||||++.+.+..
T Consensus 16 ~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGR--VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCC--EEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 355666 99999999999999999998875
No 173
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=0.00022 Score=58.75 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 162 RESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 162 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
|...++.|...+.. ....+|+|+|++|+|||||++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45566777776653 34569999999999999999999887654
No 174
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00063 Score=57.47 Aligned_cols=114 Identities=12% Similarity=0.196 Sum_probs=62.7
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------------C---
Q 046889 174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-------------E--- 237 (333)
Q Consensus 174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-------------~--- 237 (333)
..+. ++.|.|++|+|||||+..+.......+ ...+|+.... ....+.+.+ ..++.. +
T Consensus 21 ~~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~ 93 (247)
T 2dr3_A 21 PERN--VVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFT 93 (247)
T ss_dssp ETTC--EEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECST
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecch
Confidence 3455 899999999999999887765543221 2455655443 333333322 222221 0
Q ss_pred --------------CCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCch-----h----hhhccCCCCCCCcEEEEeeCCh
Q 046889 238 --------------LPDNDELVRASLLCKRIEK-QRVLVILDDLWVQI-----E----LDRVGIPYGNDGCKFLLTSRSR 293 (333)
Q Consensus 238 --------------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~----~~~l~~~~~~~g~~vivTTr~~ 293 (333)
....+..++...+.+.+.. +.-++|+|.+.... . +..+.......|+.||+|+|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 94 AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS 173 (247)
T ss_dssp TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 0113444555666666543 56689999875431 1 1111111123478899998865
Q ss_pred H
Q 046889 294 A 294 (333)
Q Consensus 294 ~ 294 (333)
.
T Consensus 174 ~ 174 (247)
T 2dr3_A 174 V 174 (247)
T ss_dssp -
T ss_pred C
Confidence 4
No 175
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.43 E-value=0.0004 Score=69.82 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 244 LVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
+...-.|...|..+ +-++|||++.+..+... +.......|..||++||+.+++. .+++.+.|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL 938 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWIIDL 938 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEE
Confidence 44556677777764 48999999987754222 21222234788999999999874 56666666
No 176
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.43 E-value=0.00013 Score=64.17 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...++.+...+..++ +++|+|++|+|||||++.+.+..
T Consensus 113 ~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence 456788888777888 99999999999999999998776
No 177
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.43 E-value=0.00031 Score=59.97 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 046889 181 IGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 181 i~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+.|+|++|+|||||++.+.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 178
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.39 E-value=0.00013 Score=76.78 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CCe----EEEEEeCCCC---------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FDE----VAMAVVSQTP--------- 220 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~~----~~wv~v~~~~--------- 220 (333)
.++++...+.+|+ .|+|||++|+|||||++.+.....+... ++. .....|+|++
T Consensus 1094 VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1171 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAE 1171 (1321)
T ss_dssp SEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHH
T ss_pred cccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHH
Confidence 4555665566677 9999999999999999999865543210 000 0012334433
Q ss_pred -----------CHHHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889 221 -----------SITKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL 272 (333)
Q Consensus 221 -----------~~~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 272 (333)
+.++ +.+.++..+.. + ....+ .+.++-.|.+.|-.++-+||||++.+..|-
T Consensus 1172 NI~~gld~~~~sd~e-i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1172 NIIYGLDPSSVTMAQ-VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp HHSSSSCTTTSCHHH-HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred HHhccCCCCCCCHHH-HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 1222 22333333221 0 01122 344556788888888899999999876442
Q ss_pred hh--c---cCCCCCCCcEEEEeeCChHHHh
Q 046889 273 DR--V---GIPYGNDGCKFLLTSRSRAACN 297 (333)
Q Consensus 273 ~~--l---~~~~~~~g~~vivTTr~~~v~~ 297 (333)
.. . .+.....|+.+|+++|......
T Consensus 1251 ~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1251 ESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp HHHHHHHHHHTTTSSSSEEEEECSSSSTTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHHHHH
Confidence 21 0 0111223788999999766533
No 179
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=0.001 Score=52.85 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEI 198 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v 198 (333)
.+|+|+|+.|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=0.0013 Score=61.84 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=33.2
Q ss_pred cccccchHHHHHHHHH---HhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIME---AMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...+.|.++.+..+.. .+... -.+-+.|+||+|+|||||++.+.+...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457787766555443 33221 122489999999999999999998764
No 181
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.36 E-value=0.00011 Score=60.50 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+++|+||+|+|||||++.+.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 89999999999999999998764
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.33 E-value=0.00085 Score=66.42 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ 257 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 257 (333)
.+-|.++||.|+|||+||+.+.+.... + .+.+..+ ++. + .+.......+...+.......
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~--~---~~~v~~~------~l~-------s--k~~gese~~lr~lF~~A~~~~ 297 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGP------EIM-------S--KLAGESESNLRKAFEEAEKNA 297 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTC--E---EEEEEHH------HHH-------S--SCTTHHHHHHHHHHHHHTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC--e---EEEEEhH------Hhh-------c--ccchHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999976541 1 2222211 111 0 111111222333344444567
Q ss_pred ceEEEEeCCCCch--------h-----hhhcc---CCCC-CCCcEEEEeeCChHHHhh-cc-----cceEecCCCCHHHH
Q 046889 258 RVLVILDDLWVQI--------E-----LDRVG---IPYG-NDGCKFLLTSRSRAACNQ-MQ-----AHIVDVRTLTEEES 314 (333)
Q Consensus 258 ~~LlVlDdv~~~~--------~-----~~~l~---~~~~-~~g~~vivTTr~~~v~~~-~~-----~~~~~l~~L~~~e~ 314 (333)
+++|+||++.... + ...+. -.+. ..+..||.||...+.... +. ...+.+..-+.++-
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHH
Confidence 8999999886421 0 11111 1111 224556667766543211 11 12377887788888
Q ss_pred HHHHHhhc
Q 046889 315 WRSAEGKR 322 (333)
Q Consensus 315 ~~lf~~~a 322 (333)
.++|+...
T Consensus 378 ~~IL~~~l 385 (806)
T 3cf2_A 378 LEILQIHT 385 (806)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 88887664
No 183
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.31 E-value=0.00024 Score=62.52 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=44.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV--SQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEK 256 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 256 (333)
+++.|+|++|+|||||+..+... . +. ...|++. .+..+ . ...+.+.....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~-G~---~VlyIs~~~eE~v~-------------~---~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-L-GG---KDKYATVRFGEPLS-------------G---YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-H-HT---TSCCEEEEBSCSST-------------T---CBCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-C-CC---CEEEEEecchhhhh-------------h---hhcCHHHHHHHHHHHHhh
Confidence 36789999999999999999876 1 11 2345555 22211 0 113455566667777777
Q ss_pred CceEEEEeCCCC
Q 046889 257 QRVLVILDDLWV 268 (333)
Q Consensus 257 k~~LlVlDdv~~ 268 (333)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 66 999998864
No 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.30 E-value=0.00011 Score=59.71 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
++++|+||+|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3789999999999999999998765
No 185
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.27 E-value=0.00018 Score=60.23 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=24.1
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+..++ +++|+||+|+|||||++.+.+...
T Consensus 13 ~~~G~--ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGT--LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCC--EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHhccCC
Confidence 44566 999999999999999999998764
No 186
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.26 E-value=0.0022 Score=56.08 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=49.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCCC---CCCCHHHHHH-HHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKEL---PDNDELVRAS-LLCK 252 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~ 252 (333)
.+++++|++|+||||++..+.......+. .+.++... .... ...+..+....+.... ...++.++.. .+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~--~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGR--RPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTC--CEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999988764321 23333322 2222 1223345555665421 2234444433 3444
Q ss_pred HHccCceEEEEeCC
Q 046889 253 RIEKQRVLVILDDL 266 (333)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (333)
....+.-++|+|.+
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33456678999987
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00017 Score=58.26 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+++|+||+|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3899999999999999999987653
No 188
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.24 E-value=0.0037 Score=57.41 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
..+++++|++|+||||++..+.......
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999887643
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.24 E-value=0.0011 Score=65.83 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD---------EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..++|.+..++.+...+.. .....+.++|+.|+|||+||+.+....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467888888777766642 123478999999999999999998876
No 190
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.23 E-value=0.0049 Score=53.89 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=47.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC---CCCCCCHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLGIK---ELPDNDELVRASLLCKR 253 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 253 (333)
..+++++|++|+||||++..+.......+. .+.++... +.+.....+.......+.+ .....++........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~--~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF--KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC--CEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 458999999999999999999887764321 23333332 1122223334444555543 11122344443334444
Q ss_pred Hc-cCceEEEEeCC
Q 046889 254 IE-KQRVLVILDDL 266 (333)
Q Consensus 254 l~-~k~~LlVlDdv 266 (333)
+. .+--++++|-+
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33346777754
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.0038 Score=57.44 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
..+|.++|++|+||||++..+.......
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5699999999999999999998777643
No 192
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.22 E-value=0.00016 Score=59.48 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+++|+||+|+|||||++.+.....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 799999999999999999987653
No 193
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.22 E-value=0.0024 Score=59.54 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
..+++|+|++|+|||||++.+.+.....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 4599999999999999999999887643
No 194
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00017 Score=58.69 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.+++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999865
No 195
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.20 E-value=0.0022 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...+.++||.|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998873
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.20 E-value=0.0012 Score=66.56 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 158 NFKSRESTMKDIMEAMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.++|.+..++.+...+... ....+.|+|+.|+|||+||+.+.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689888888887776431 125789999999999999999998764
No 197
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.20 E-value=0.00024 Score=58.81 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+|+|+|++|+|||||++.+.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998765
No 198
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.19 E-value=0.0065 Score=56.02 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
+..+|.++|++|+||||++..+.......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999998777653
No 199
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00027 Score=57.99 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+++...+..+. +|.|+|++|+||||+++.+....
T Consensus 14 ~~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 3445555555555 89999999999999999998766
No 200
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.16 E-value=0.0003 Score=63.04 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
....++.+ ..+..++ +++|+|++|+|||||++.+.+....
T Consensus 58 g~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp SCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34567777 6666777 9999999999999999999998653
No 201
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.00028 Score=58.03 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|+|+|++|+|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3499999999999999999998765
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.13 E-value=0.0042 Score=57.19 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
+..+|.++|++|+||||++..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999877654
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.13 E-value=0.00058 Score=60.28 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
...+|+|+|++|+|||||++.+.+...+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3459999999999999999999988765
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.11 E-value=0.00044 Score=56.80 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...+|+|+|++|+|||||++.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345999999999999999999998875
No 205
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.0003 Score=57.13 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3789999999999999999975
No 206
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.10 E-value=0.00027 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+++|+|++|+|||||++.+.+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998876
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.08 E-value=0.00038 Score=61.24 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
..+++|+|++|+|||||++.+.....+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 3499999999999999999999887653
No 208
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.07 E-value=0.0045 Score=54.30 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR 253 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~ 253 (333)
+++-|.|+.|+|||||+..+.........=..++|++..+..+.. .+++++... ..+.+.++....+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999998887665432112356788777766643 367777641 1123444441223333
Q ss_pred H---c-cCceEEEEeCCCC
Q 046889 254 I---E-KQRVLVILDDLWV 268 (333)
Q Consensus 254 l---~-~k~~LlVlDdv~~ 268 (333)
+ . .+.-++|+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 3 3 3678999997754
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.07 E-value=0.00013 Score=61.11 Aligned_cols=108 Identities=9% Similarity=-0.024 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--CCCCCHHHHHHHHHHHHcc
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE--LPDNDELVRASLLCKRIEK 256 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 256 (333)
.++.++|+.|+||||++..+.......+ . .+..+....+. . ....++.+++... .......+....+.+.+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 5899999999999999988887765432 2 22333222211 1 1123444555421 1111223344444443433
Q ss_pred C-ceEEEEeCCCCc--hhhhhccCCCCCCCcEEEEeeCC
Q 046889 257 Q-RVLVILDDLWVQ--IELDRVGIPYGNDGCKFLLTSRS 292 (333)
Q Consensus 257 k-~~LlVlDdv~~~--~~~~~l~~~~~~~g~~vivTTr~ 292 (333)
. .-+|++|++... ..++.+ ..+.+.|..||+|-|.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l-~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVA-NILAENGFVVIISGLD 125 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHH-HHHHHTTCEEEEECCS
T ss_pred CCCCEEEEecCccCcHHHHHHH-HHHHhCCCeEEEEecc
Confidence 3 459999988632 222222 1112237889999984
No 210
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.07 E-value=0.0006 Score=60.31 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 160 KSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|....+..+...+.. +...+|+|.|++|+|||||++.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444555555544433 2456999999999999999999987765
No 211
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.07 E-value=0.0039 Score=55.77 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCCCC
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE------------LPDND 242 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------------~~~~~ 242 (333)
.++.|.|++|+|||||+..+........ .-...+|++....++...+. .++..++... .....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~ 201 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEH 201 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHH
Confidence 4899999999999999999887632111 12456788777766655443 4455555421 11111
Q ss_pred HHHHHHHHHHHHc---cCceEEEEeCCCC
Q 046889 243 ELVRASLLCKRIE---KQRVLVILDDLWV 268 (333)
Q Consensus 243 ~~~~~~~l~~~l~---~k~~LlVlDdv~~ 268 (333)
..+....+...+. .+.-+||+|.+..
T Consensus 202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 202 QMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2233444555554 4567999998754
No 212
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.07 E-value=0.00048 Score=60.55 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
.+++|+|++|+|||||++.+.+.....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 499999999999999999999887643
No 213
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.06 E-value=0.00041 Score=59.22 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 161 SRESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 161 gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+....++++...+.. +. +|+|+|++|+||||+++.+.....
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhcC
Confidence 445678888888877 77 899999999999999999988653
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00028 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|+|+|++|+|||||++.+.....
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987653
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.05 E-value=0.00024 Score=65.15 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
|... ++.+...+..|....++|+|++|+|||||++.+++.
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4334 888888888888323999999999999999999865
No 216
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.03 E-value=0.00044 Score=66.86 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=42.2
Q ss_pred cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.....++|.+..++.+...+..+. .+.|+|++|+||||||+.+.+...
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCC
Confidence 345678999999999999998886 899999999999999999998764
No 217
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.03 E-value=0.00038 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+++|+|++|+|||||++.+....
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 89999999999999999998765
No 218
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.02 E-value=0.00097 Score=58.21 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
++..+|+|+|++|+|||||++.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999887764
No 219
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.02 E-value=0.00079 Score=60.62 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=50.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---CCCCCCHHH-----
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MFDEVAMAVVSQTPSITKIQDEIAGWLGIK---ELPDNDELV----- 245 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~----- 245 (333)
.++ .++|+|++|+|||||++.+........ .+ .++++-+.+.... ..++.+.+... .....+...
T Consensus 173 rGQ--r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v-~~I~~lIGER~~E---v~~~~~~~~~~vV~atadep~~~r~~~a 246 (422)
T 3ice_A 173 RGQ--RGLIVAPPKAGKTMLLQNIAQSIAYNHPDC-VLMVLLIDERPEE---VTEMQRLVKGEVVASTFDEPASRHVQVA 246 (422)
T ss_dssp TTC--EEEEECCSSSSHHHHHHHHHHHHHHHCTTS-EEEEEEESSCHHH---HHHHHTTCSSEEEEECTTSCHHHHHHHH
T ss_pred CCc--EEEEecCCCCChhHHHHHHHHHHhhcCCCe-eEEEEEecCChHH---HHHHHHHhCeEEEEeCCCCCHHHHHHHH
Confidence 455 899999999999999999987765432 22 2445667765432 22233333110 112222221
Q ss_pred -HHHHHHHHHc--cCceEEEEeCCCC
Q 046889 246 -RASLLCKRIE--KQRVLVILDDLWV 268 (333)
Q Consensus 246 -~~~~l~~~l~--~k~~LlVlDdv~~ 268 (333)
....+.+++. ++..|+++||+..
T Consensus 247 ~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 247 EMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1222344443 5889999999864
No 220
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.02 E-value=0.0033 Score=55.70 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=55.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHH--
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPDNDEL-- 244 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~-- 244 (333)
++.|.|++|+|||||+..+........ .-..++|++....++...+. .++..++... ....+..
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 187 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDHQ 187 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHHH
Confidence 899999999999999999886642111 02356788777766655544 4456665521 0112223
Q ss_pred -HHHHHHHHHHc--cCceEEEEeCCCC
Q 046889 245 -VRASLLCKRIE--KQRVLVILDDLWV 268 (333)
Q Consensus 245 -~~~~~l~~~l~--~k~~LlVlDdv~~ 268 (333)
+....+...+. .+.-+||+|.+..
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23445555554 3567999998753
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.00 E-value=0.00038 Score=57.59 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+++|+||+|+|||||++.+.....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999987653
No 222
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.00 E-value=0.00084 Score=59.16 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+...+|+|+|++|+|||||++.+.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446999999999999999999998764
No 223
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.99 E-value=0.00028 Score=63.76 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCC-CCHH
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLG-IKELPD-NDEL 244 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~~~~-~~~~ 244 (333)
+.+...+..++ +++|+|++|+|||||++.+.+...+. ...+.+.-......... +.....+. ...... ....
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~-~~~v~~v~~q~~~~~~~~~~ 239 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDH-PNHVHLFYPSEAKEEENAPV 239 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTC-SSEEEEECC----------C
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCcccc-CCEEEEeecCcccccccccc
Confidence 66777777777 89999999999999999998776432 22333321111110000 00000000 000000 0011
Q ss_pred HHHHHHHHHHccCceEEEEeCCCCchhhhhcc-CCCCCCCcEEEEeeCChHH
Q 046889 245 VRASLLCKRIEKQRVLVILDDLWVQIELDRVG-IPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~-~~~~~~g~~vivTTr~~~v 295 (333)
.....+...+...+-.+++|++.....+..+. ++.+ ...++.|+|....
T Consensus 240 t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g--~~~~l~t~H~~~~ 289 (361)
T 2gza_A 240 TAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASG--HGGSITSCHAGSC 289 (361)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTT--CCSCEEEEECSSH
T ss_pred CHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcC--CCeEEEEECCCCH
Confidence 23445666666677788899887654443331 2221 2235778887654
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.99 E-value=0.004 Score=56.14 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=53.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI 254 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l 254 (333)
++.|.|++|+|||||+..+........ ..++|++....++.. .+..++... ....+.++....+...+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 899999999999999998876654322 357788887766543 245555531 12234555555565555
Q ss_pred cc-CceEEEEeCCC
Q 046889 255 EK-QRVLVILDDLW 267 (333)
Q Consensus 255 ~~-k~~LlVlDdv~ 267 (333)
.. +.-+||+|.+.
T Consensus 149 ~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 149 RSGAIDVVVVDSVA 162 (366)
T ss_dssp TTTCCSEEEEECTT
T ss_pred hcCCCCEEEEeChH
Confidence 44 45699999764
No 225
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.99 E-value=0.007 Score=56.03 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=52.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHHH-H
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDELV-R 246 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~-~ 246 (333)
.++ .++|+|++|+|||||++.+......... ...+++.+.+..+ ..++.+.+...-.+. .....++.. .
T Consensus 150 kGq--~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~ 226 (473)
T 1sky_E 150 KGG--KIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARM 226 (473)
T ss_dssp TTC--EEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHH
T ss_pred cCC--EEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHH
Confidence 455 7999999999999999999887654332 3345666665533 233333333210000 111222211 1
Q ss_pred -----HHHHHHHH---ccCceEEEEeCCCC
Q 046889 247 -----ASLLCKRI---EKQRVLVILDDLWV 268 (333)
Q Consensus 247 -----~~~l~~~l---~~k~~LlVlDdv~~ 268 (333)
...+.+++ ++++.|+++||+..
T Consensus 227 ~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 22445554 46789999999853
No 226
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.99 E-value=0.00052 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+++|+|++|+|||||++.+....
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998764
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.99 E-value=0.0011 Score=61.90 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHH---HhhcCC--ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIME---AMKDEK--VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~---~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++|.+..++.+.. .+..+. .+-+.++||.|+|||+||+.+.....
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 568898887765444 333332 24688999999999999999998864
No 228
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.98 E-value=0.00043 Score=61.87 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
...++.+...+.. ..+++|+|++|+|||||++.+.+....
T Consensus 42 ~~~l~~i~~~~~~--g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGR--AIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCC--SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCC--CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3445555443333 349999999999999999999987654
No 229
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.97 E-value=0.00016 Score=60.91 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=15.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-HHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQ-KQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~-~~~ 202 (333)
+++|+||+|+|||||++.+. ...
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 89999999999999999998 664
No 230
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.96 E-value=0.00063 Score=62.97 Aligned_cols=40 Identities=13% Similarity=0.342 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
....++.+ ..+..++ +++|+|++|+|||||++.+.+....
T Consensus 144 g~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp SCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCC
Confidence 34577777 6666777 9999999999999999999988643
No 231
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.94 E-value=0.00044 Score=59.74 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.++|+|++|+|||||++.+++...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999987643
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00072 Score=60.77 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.+++|+|++|+|||||++.+.+....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccc
Confidence 49999999999999999999988764
No 233
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.93 E-value=0.00054 Score=58.22 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|+|+|++|+|||||++.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999999998554
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.91 E-value=0.0048 Score=55.40 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=51.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI 254 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l 254 (333)
++.|.|++|+|||||+..+........ ..++|++.....+.. .+..++... ....+.++....+....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 899999999999999999887654322 357788877666533 245555431 11223444444444443
Q ss_pred c-cCceEEEEeCCC
Q 046889 255 E-KQRVLVILDDLW 267 (333)
Q Consensus 255 ~-~k~~LlVlDdv~ 267 (333)
. .+.-+||+|.+.
T Consensus 138 ~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 138 RSGAVDVIVVDSVA 151 (356)
T ss_dssp HHTCCSEEEEECGG
T ss_pred hccCCCEEEEcCHH
Confidence 3 456699999764
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.89 E-value=0.00063 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998765
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.88 E-value=0.0048 Score=54.86 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh-----------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL----------- 233 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l----------- 233 (333)
.++.+..-+..+. ++.|.|++|+|||||+..+.......+ ..+.|++... +...+...++...
T Consensus 35 ~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlEm--s~~ql~~Rlls~~~~v~~~~l~~g 108 (338)
T 4a1f_A 35 QLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLEM--SAEQLALRALSDLTSINMHDLESG 108 (338)
T ss_dssp HHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESSS--CHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred HHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCC--CHHHHHHHHHHHhhCCCHHHHhcC
Confidence 4445444445566 899999999999999999987765421 3455555432 3344444332211
Q ss_pred ----------------------CCCCCCCCCHHHHHHHHHHHHcc--CceEEEEeCC
Q 046889 234 ----------------------GIKELPDNDELVRASLLCKRIEK--QRVLVILDDL 266 (333)
Q Consensus 234 ----------------------~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv 266 (333)
...+....+..++...+++.... +.-+||+|-+
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEech
Confidence 01122334566666666665544 4679999954
No 237
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.87 E-value=0.0065 Score=53.58 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.++.+..-+..+. ++.|.|++|+|||||+..+......++ ..+.|++... +...+...++
T Consensus 57 ~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH
Confidence 4455543345566 899999999999999999886654332 4566666543 3344444433
No 238
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.87 E-value=0.00098 Score=61.05 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+++|+|++|+|||||++.+.+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999999743
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.87 E-value=0.00064 Score=55.65 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
++++|+||+|+|||||++.+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998764
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.86 E-value=0.00091 Score=59.43 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..++|++..++.+...+..++ -+.++|+.|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999998888887765 68899999999999999998765
No 241
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.84 E-value=0.00071 Score=56.50 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998654
No 242
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.83 E-value=0.0013 Score=58.57 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
++.+...+..++...|.|+|++|+||||+++.+.....
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444444567766799999999999999999887654
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.0006 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|+|++|+|||||++.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998775
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.81 E-value=0.0005 Score=55.07 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
.+++|+|++|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 489999999999999999999887764
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00079 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+|++|+||||+++.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999998765
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.77 E-value=0.001 Score=53.71 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
...+|.|+|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3458999999999999999999988764
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.77 E-value=0.0064 Score=56.55 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH-HhCCC-------
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG-WLGIK------- 236 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~-~l~~~------- 236 (333)
.++.+..-+..+. ++.|.|++|+|||||+..+......... ..+.|++... +...+...++. .++..
T Consensus 192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g 266 (454)
T 2r6a_A 192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTG 266 (454)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTS
T ss_pred HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcC
Confidence 4555554455566 8999999999999999999887654322 2455655433 33344433321 11110
Q ss_pred -------------------------CCCCCCHHHHHHHHHHHHcc-CceEEEEeCCC
Q 046889 237 -------------------------ELPDNDELVRASLLCKRIEK-QRVLVILDDLW 267 (333)
Q Consensus 237 -------------------------~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (333)
+....+..++...+.+.... +.-+||+|.+.
T Consensus 267 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 267 KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGG
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHH
Confidence 11223566666666655533 56799999764
No 248
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.77 E-value=0.00078 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.75 E-value=0.0037 Score=55.30 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKK---------MF-----DEVAMAVVSQTPSITKIQDEIAGWLGIKE------- 237 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------- 237 (333)
.++.|.|++|+|||||+..+........ .. ..++|++....++...+. .++..++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcCE
Confidence 4899999999999999999886532110 11 356777777666655544 4456665531
Q ss_pred --CCCCCHH---HHHHHHHHHHcc--CceEEEEeCCC
Q 046889 238 --LPDNDEL---VRASLLCKRIEK--QRVLVILDDLW 267 (333)
Q Consensus 238 --~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 267 (333)
....+.+ +....+...+.. +.-+||+|.+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1112223 234455555554 45699999875
No 250
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.75 E-value=0.028 Score=52.75 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
+..+|+|+|++|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4569999999999999999999876653
No 251
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.72 E-value=0.0022 Score=53.40 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445555555556678999999999999999999987653
No 252
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.71 E-value=0.00096 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999965
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.69 E-value=0.0012 Score=56.51 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+|++|+|||||++.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998765
No 254
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.68 E-value=0.001 Score=56.76 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|+|++|+|||||++.+....
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 399999999999999999998543
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.0012 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999986
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.65 E-value=0.00091 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+|++|+|||||++.+....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 389999999999999999998765
No 257
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.65 E-value=0.0015 Score=59.14 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
++.+...+..++ +++|+||+|+|||||++.+.+..
T Consensus 159 l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 159 LKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 334443334445 99999999999999999999754
No 258
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.002 Score=53.43 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344555555555556678999999999999999999987753
No 259
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.63 E-value=0.0015 Score=61.39 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..++|++..++.+...+..+. -+.|+|++|+|||+||+.+....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 457899999999888887776 78999999999999999998765
No 260
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.0014 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+|.|.|+.|+||||+++.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988765
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.61 E-value=0.0011 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|.|+||+|+|||||++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999988664
No 262
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.61 E-value=0.0014 Score=58.46 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=34.8
Q ss_pred cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...++|.+.....+...+..+...-+.|+|+.|+|||+||+.+.....
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 456888887666554444322223488999999999999999998653
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.60 E-value=0.0014 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|.|+|+.|+||||+++.+....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.60 E-value=0.0012 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+.+|+|+||+|||||+..++.-.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998654
No 265
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.58 E-value=0.0018 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+++|+|+.|+|||||+..+......
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 458999999999999999999987764
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.58 E-value=0.0015 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+|.|.|+.|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999988765
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.57 E-value=0.0013 Score=62.03 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
...++.+...+..+. +++|+|++|+|||||++.+.+....
T Consensus 247 ~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 345566666666676 6999999999999999999877643
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.57 E-value=0.00041 Score=69.32 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+.|.+...+.|...+.- .....+.++||+|+||||||+.+.+...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 3456767777776665531 1234688999999999999999998874
No 269
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.56 E-value=0.0015 Score=53.38 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988764
No 270
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.56 E-value=0.0015 Score=53.76 Aligned_cols=25 Identities=52% Similarity=0.663 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|+|+|++|+|||||++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999997653
No 271
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.55 E-value=0.011 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
..+++|+|++|+||||++..+.......
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3599999999999999999998877643
No 272
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.55 E-value=0.0013 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|.|+|++|+||||+++.+.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987653
No 273
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.54 E-value=0.002 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998765
No 274
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.51 E-value=0.0015 Score=53.03 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-.++|+|++|+|||||++.+.+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0019 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998755
No 276
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.48 E-value=0.023 Score=52.57 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=57.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC------------CCCCC
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS-ITKIQDEIAGWLGIK------------ELPDN 241 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------------~~~~~ 241 (333)
.++ .++|+|+.|+|||+|+..+...... .+-+.++++-+.+..+ ..++.+.+...=.+. ...+.
T Consensus 152 kGQ--r~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 152 KGG--KIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp TTC--EEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred cCC--eeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence 355 8999999999999999999876532 2345677777887654 345666665542221 11122
Q ss_pred CHH------HHHHHHHHHHcc---CceEEEEeCCCC
Q 046889 242 DEL------VRASLLCKRIEK---QRVLVILDDLWV 268 (333)
Q Consensus 242 ~~~------~~~~~l~~~l~~---k~~LlVlDdv~~ 268 (333)
+.. .....+.+++.+ +..||++||+..
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 222 123346666654 789999999853
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.48 E-value=0.0019 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
++..+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44568999999999999999998764
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.46 E-value=0.0036 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 279
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.45 E-value=0.0041 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.+|+|+|++|+||||+++.+......
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 48999999999999999999887654
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.41 E-value=0.0026 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+++|+|++|+|||||++.+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 458999999999999999999887653
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.41 E-value=0.0036 Score=57.43 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.-.+++|+|++|+|||||++.+.+....
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3359999999999999999999987653
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.41 E-value=0.0021 Score=54.71 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+...+|+|.|+.|+||||+++.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556899999999999999999987543
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.41 E-value=0.002 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|++|+|||||++.+.+.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.40 E-value=0.0018 Score=51.98 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+|+.|+||||+++.+....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 378899999999999999998765
No 285
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.39 E-value=0.0034 Score=59.69 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 158 NFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.++.+......+..... -.+-.+++|+|++|+|||||++.+......
T Consensus 347 ~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 347 EWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34555556655655431 122348999999999999999999988764
No 286
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.39 E-value=0.0018 Score=58.48 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..++|+|++|+|||||++.+.+...+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 48999999999999999999987654
No 287
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.39 E-value=0.0036 Score=56.34 Aligned_cols=45 Identities=24% Similarity=0.203 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhh-------------c--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 158 NFKSRESTMKDIMEAMK-------------D--EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.++|.+..++.+...+. . .....+.++||+|+|||++|+.+....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35888888888777662 0 023468999999999999999998876
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0025 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999987654
No 289
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.38 E-value=0.0018 Score=57.30 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+..+++|+|++|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35799999999999999999998764
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.37 E-value=0.0058 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
....+|.|.|+.|+||||+++.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998665
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.37 E-value=0.0012 Score=54.47 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999988765
No 292
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.37 E-value=0.0019 Score=60.27 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.+++|+|++|+|||||++.+.+...+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 59999999999999999999987654
No 293
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.36 E-value=0.0044 Score=51.17 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+|.|+|+.|+||||+++.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999988776
No 294
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.36 E-value=0.0028 Score=51.85 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+..+|+|.|+.|+||||+++.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998654
No 295
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.0025 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..+|.|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999999875
No 296
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.34 E-value=0.0024 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
++.+|+|+||+|||||+..++--.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999887543
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.32 E-value=0.0021 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 046889 181 IGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 181 i~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+.|+|++|+|||||++.+.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998764
No 298
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.31 E-value=0.0012 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.+|+|.|++|+|||||++.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 59999999999999999998765
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.30 E-value=0.0032 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+|+|.|+.|+||||+++.+.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3899999999999999999987653
No 300
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.0029 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.+|.|.|+.|+||||+++.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 48999999999999999999887653
No 301
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.29 E-value=0.0037 Score=55.98 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
++.|...+ .+. +++|+|++|+|||||++.+.+...
T Consensus 206 l~~L~~~~-~G~--~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEAL-TGR--ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHH-TTS--EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhc-CCC--EEEEECCCCccHHHHHHHHhcccc
Confidence 33444433 455 899999999999999999986543
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.29 E-value=0.0026 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+|+.|+||||+++.+....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
No 303
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.29 E-value=0.0039 Score=53.10 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...+|.|+|++|+||||+++.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998765
No 304
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.27 E-value=0.003 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+|+|.|+.|+||||+++.+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 305
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.27 E-value=0.0022 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|.|+|+.|+||||+++.+.....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987653
No 306
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.25 E-value=0.003 Score=51.10 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 307
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.25 E-value=0.0031 Score=49.82 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.|.|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 308
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.25 E-value=0.0025 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+|.|.|+.|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987653
No 309
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.24 E-value=0.0041 Score=54.55 Aligned_cols=33 Identities=15% Similarity=0.485 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+.|...+ .+. +++|+|++|+|||||++.+. ...
T Consensus 157 ~~L~~~l-~G~--i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 157 DELVDYL-EGF--ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHT-TTC--EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHhhc-cCc--EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3444433 355 89999999999999999998 543
No 310
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.24 E-value=0.0032 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|.|+.|+||||+++.+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998764
No 311
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.20 E-value=0.004 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+|+|+|++|+||||++..+......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999877653
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.19 E-value=0.0034 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999887643
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.18 E-value=0.0039 Score=51.86 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++|.|+||+|+||+|.++.+.....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456999999999999999999987653
No 314
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.17 E-value=0.0035 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|.|++|+||||+++.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998665
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.17 E-value=0.0034 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997664
No 316
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.17 E-value=0.0036 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+|.|+|++|+||||+++.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999988754
No 317
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.17 E-value=0.018 Score=46.84 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC---CCCHHHHHHHHHHHhCCC------CCCCC--CH----
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ---TPSITKIQDEIAGWLGIK------ELPDN--DE---- 243 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~l~~~------~~~~~--~~---- 243 (333)
..|.|++.+|.||||+|--+.-..-- ..+. +.++...+ ......++ +.++.. .+... +.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-~G~r-V~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-HGKN-VGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-TTCC-EEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-CCCe-EEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 36777778889999999887766542 2232 33333222 22233333 333211 11111 11
Q ss_pred ---HHHHHHHHHHHccCc-eEEEEeCCCCc--------hhhhhccCCCCCCCcEEEEeeCChHH
Q 046889 244 ---LVRASLLCKRIEKQR-VLVILDDLWVQ--------IELDRVGIPYGNDGCKFLLTSRSRAA 295 (333)
Q Consensus 244 ---~~~~~~l~~~l~~k~-~LlVlDdv~~~--------~~~~~l~~~~~~~g~~vivTTr~~~v 295 (333)
......+.+.+.+.+ -|||||++-.. .++..+... ......||+|+|+..-
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcH
Confidence 112334555555544 59999988432 223333221 2235679999998743
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.16 E-value=0.0039 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|.|+|+.|+||||+++.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.15 E-value=0.0036 Score=51.46 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE 210 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 210 (333)
.+|+|.|+.|+||||+++.+...... .+++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 48999999999999999999887653 24444
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.12 E-value=0.0025 Score=51.14 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|.|+.|+||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999997654
No 321
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.11 E-value=0.035 Score=51.33 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
.++.+..-+..+. ++.|.|++|+|||||+..+......... ..++|++... +...+...++
T Consensus 189 ~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 189 ELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp HHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSS--CHHHHHHHHH
T ss_pred hhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCC--CHHHHHHHHH
Confidence 3444443344555 8999999999999999999877653222 2455655433 3444544443
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.10 E-value=0.0078 Score=50.47 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+|+|.|++|+||||+++.+......
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999988764
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.10 E-value=0.0041 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|.|.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998765
No 324
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.09 E-value=0.022 Score=52.95 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=57.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH-HHHHHHHHHHhCCC-------------CCCCCCHH-
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI-TKIQDEIAGWLGIK-------------ELPDNDEL- 244 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~l~~~-------------~~~~~~~~- 244 (333)
.++|+|..|+|||+|+..+.+.... .+-+.++++-+.+..+. .++.+++...=.+. ...+.+..
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~ 245 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 245 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred eEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence 7999999999999999999877532 23467788888876643 45566665432121 11122221
Q ss_pred -----HHHHHHHHHHcc---CceEEEEeCCCC
Q 046889 245 -----VRASLLCKRIEK---QRVLVILDDLWV 268 (333)
Q Consensus 245 -----~~~~~l~~~l~~---k~~LlVlDdv~~ 268 (333)
.....+.+++.+ +..||++||+..
T Consensus 246 R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 234457777765 789999999853
No 325
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.08 E-value=0.0041 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.+|+|.|+.|+||||+++.+......
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999987653
No 326
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.08 E-value=0.0039 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 327
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.03 E-value=0.0047 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...+|+|+|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.0046 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+|+|.|+.|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998765
No 329
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.01 E-value=0.0042 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|+|+|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999987653
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.01 E-value=0.0039 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..|.|.|+.|+||||+++.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.97 E-value=0.0043 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998754
No 332
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.97 E-value=0.0077 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+.++|+.|+|||+||+.+....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998766
No 333
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.96 E-value=0.0048 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|++|+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998753
No 334
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.96 E-value=0.013 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..+|+|+|++|+|||||.+.+.+....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 569999999999999999999986643
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.95 E-value=0.0044 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|.|.|+.|+||||+++.+....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998654
No 336
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.95 E-value=0.013 Score=56.12 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
+++.|.|++|+||||++..+......
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999877654
No 337
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.92 E-value=0.0047 Score=55.13 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
++..+|+|+|++|+|||||+..+......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45569999999999999999999877653
No 338
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.91 E-value=0.0071 Score=52.98 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=22.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+. +++|+|++|+|||||++.+.+...
T Consensus 168 ~ge--iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGK--ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSS--EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCC--eEEEECCCCCcHHHHHHHhccccc
Confidence 355 899999999999999999986543
No 339
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.90 E-value=0.0035 Score=54.98 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-|+|+|++|+|||||++.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998754
No 340
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.88 E-value=0.0052 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.613 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQ 199 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~ 199 (333)
+...+|+|+|+.|+||||+++.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 341
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.0058 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+|.|+||+|+||+|.++.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999987653
No 342
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.80 E-value=0.0062 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998765
No 343
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.0036 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999987654
No 344
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.79 E-value=0.013 Score=55.12 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 157 YNFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
+..+.+.++.+.+..... ..+..+|.++|+.|+||||+++.+.....
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 456677777777777662 23456899999999999999999998875
No 345
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.78 E-value=0.006 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+|+|.|+.|+|||||++.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999987653
No 346
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.77 E-value=0.0049 Score=49.45 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-|+|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998763
No 347
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.75 E-value=0.021 Score=47.64 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
.....|.|.|+.|+||||+++.+......
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34568999999999999999999988764
No 348
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.74 E-value=0.0053 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|++|+|||||++.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 349
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.74 E-value=0.0067 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 350
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.73 E-value=0.0077 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|+|+|++|+||||+++.+....
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999988654
No 351
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.72 E-value=0.0065 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
++..|+|+||+||||++..++--.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999886544
No 352
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.71 E-value=0.006 Score=55.01 Aligned_cols=50 Identities=6% Similarity=0.039 Sum_probs=33.1
Q ss_pred cCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 256 KQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 256 ~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.++-+++||++.+..+. ..+.......|..||++||+.+.... ++..+.|
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~-~d~~~~l 357 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA-FDRKLRI 357 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT-CSCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEE
Confidence 68889999999876442 22222233447889999999998544 4555444
No 353
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.71 E-value=0.023 Score=47.79 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV 215 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 215 (333)
.+|.|.|+.|+||||+++.+...... .++.......
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 48999999999999999999988764 3454333333
No 354
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.70 E-value=0.018 Score=51.66 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 166 MKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 166 ~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
...+...+. .++..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444443 35667999999999999999999887654
No 355
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.69 E-value=0.0032 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...|+|+|++|+|||||++.+.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999887543
No 356
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.69 E-value=0.026 Score=46.69 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
.|.+.|+.|+||||+++.+....... .+....+..-+........++.++.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 79999999999999999999887653 3423333333333233445555554
No 357
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.68 E-value=0.0063 Score=54.27 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889 249 LLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV 306 (333)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l 306 (333)
.+...+..++-+++||++.+..|. ..+.......|..||++||+..+.. ++++.+.+
T Consensus 264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~-~~d~~~~l 326 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD-AADHVIRI 326 (339)
T ss_dssp HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG-GCSEEEEE
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hCCEEEEE
Confidence 345566678889999999877542 2221222234668999999977654 44555444
No 358
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.68 E-value=0.056 Score=49.97 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC
Q 046889 165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ 218 (333)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 218 (333)
.++.+..-+..+. ++.|.|++|+|||||+..+......++ ..+.|++...
T Consensus 186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm 235 (444)
T 3bgw_A 186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM 235 (444)
T ss_dssp HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence 4444443344556 899999999999999999887765431 2455655443
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.67 E-value=0.007 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|.|.|+.|+||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 360
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.61 E-value=0.007 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
++.+|+|+||+|||||+..++.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 3899999999999999999986
No 361
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.61 E-value=0.036 Score=59.99 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC--C---CCCCCHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK--E---LPDNDELVRASLLCKR 253 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~--~---~~~~~~~~~~~~l~~~ 253 (333)
.++.|+||.|+|||+||..+.......+ ....|+.+....+... +..++.+ . ....+.++....+.+.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 3899999999999999999877654221 2456777666655443 4555632 0 1122334444444444
Q ss_pred Hc-cCceEEEEeCCC
Q 046889 254 IE-KQRVLVILDDLW 267 (333)
Q Consensus 254 l~-~k~~LlVlDdv~ 267 (333)
.. .+..+||+|++.
T Consensus 1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHTCCSEEEESCGG
T ss_pred HhcCCCCEEEEcChh
Confidence 43 467899999884
No 362
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.59 E-value=0.0089 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|.++|..|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998765
No 363
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.58 E-value=0.0085 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+||.|+|||||++.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998764
No 364
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.57 E-value=0.0034 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+++|+|++|+|||||++.+....
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 89999999999999999997654
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.51 E-value=0.013 Score=54.01 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 158 NFKSRESTMKDIMEAMKD--------------EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.++|.+..++.+...+.. ...+-+.++||.|+||||+|+.+.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467877777777655522 1234688999999999999999988764
No 366
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.50 E-value=0.0065 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|.+|+|||||++.+.+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 367
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.50 E-value=0.036 Score=45.79 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..|.|.|+.|+||||+++.+......
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999988764
No 368
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.49 E-value=0.18 Score=44.68 Aligned_cols=130 Identities=9% Similarity=0.002 Sum_probs=73.0
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 046889 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLC 251 (333)
Q Consensus 172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 251 (333)
.+..+-.+++.++|+.|.||++.++.+....... .|.....+.+....++..+...+ -.
T Consensus 12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~--------------------~~ 70 (343)
T 1jr3_D 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLC--------------------QA 70 (343)
T ss_dssp HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHH--------------------HH
T ss_pred HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHh--------------------cC
Confidence 3333445689999999999999999998776432 34332222333333333322211 01
Q ss_pred HHHccCceEEEEeCCCC-c--hhhhhcc--CCCCCCCcEEEEeeCC-------hHHHhhcccc--eEecCCCCHHHHHHH
Q 046889 252 KRIEKQRVLVILDDLWV-Q--IELDRVG--IPYGNDGCKFLLTSRS-------RAACNQMQAH--IVDVRTLTEEESWRS 317 (333)
Q Consensus 252 ~~l~~k~~LlVlDdv~~-~--~~~~~l~--~~~~~~g~~vivTTr~-------~~v~~~~~~~--~~~l~~L~~~e~~~l 317 (333)
.-+.+++-++|+|++.. . ..++.+. +..+..++.+|++|.. ..+...+... .+...++++++....
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 12345677899999865 2 3333331 2223346777766643 2343333333 388888888887766
Q ss_pred HHhhc
Q 046889 318 AEGKR 322 (333)
Q Consensus 318 f~~~a 322 (333)
+.+.+
T Consensus 151 l~~~~ 155 (343)
T 1jr3_D 151 VAARA 155 (343)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 369
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.45 E-value=0.0092 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998863
No 370
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.45 E-value=0.0011 Score=55.52 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
+++|+||+|+|||||++.++....+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC
Confidence 56899999999999999999877543
No 371
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.44 E-value=0.01 Score=49.80 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..|.|.|+.|+||||+++.+.....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987753
No 372
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.44 E-value=0.0054 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-|+|+|++|+|||||++.+++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36999999999999999998654
No 373
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.44 E-value=0.0097 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+||.|+|||||+..+....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 489999999999999999998654
No 374
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.44 E-value=0.0088 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|.++|.+|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998653
No 375
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.40 E-value=0.0094 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|.|+|..|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999998865
No 376
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.39 E-value=0.037 Score=46.34 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=24.1
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..+...+..++ .+.++|+.|+||||++....-.
T Consensus 67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 67 SEILEAISQNS--VVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHHhc
Confidence 34444555666 8999999999999877766543
No 377
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.38 E-value=0.011 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..+|.|+||.|+|||||+..+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998664
No 378
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.37 E-value=0.011 Score=58.45 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=53.2
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH
Q 046889 158 NFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK 224 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 224 (333)
.+.|-++..+.|...+.- ...+-+.++||.|+|||.||+.+.+.... . ++.++ ..+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--~-----f~~v~----~~~ 546 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--N-----FISIK----GPE 546 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--E-----EEECC----HHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--c-----eEEec----cch
Confidence 345667777666655421 12345889999999999999999987642 1 22222 122
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCC
Q 046889 225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWV 268 (333)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (333)
++ . .+...+...+...+...-...+++|++|++.+
T Consensus 547 l~----s-----~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 547 LL----T-----MWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----T-----TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred hh----c-----cccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 21 1 12223333333333344455789999998863
No 379
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.34 E-value=0.0088 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999865
No 380
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.33 E-value=0.047 Score=58.24 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI 254 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l 254 (333)
++.|.|++|+|||||+..+........ ..+.|++........ .+..++... ....+..+....+.+..
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence 899999999999999999987765322 246676666555432 255666420 12335556655565544
Q ss_pred c-cCceEEEEeCCCC
Q 046889 255 E-KQRVLVILDDLWV 268 (333)
Q Consensus 255 ~-~k~~LlVlDdv~~ 268 (333)
. .+.-++|+|.+..
T Consensus 807 ~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 807 RSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHTCCSEEEESCSTT
T ss_pred HccCCCEEEEechhh
Confidence 3 4667999998753
No 381
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.01 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
....|+|+|+.|+|||||+..+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999998765
No 382
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.32 E-value=0.016 Score=51.07 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
++.+||+|.|-||+||||.+-.+.--...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 45689999999999999998887766654
No 383
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.31 E-value=0.011 Score=47.00 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+...|+|+|+.|+|||||+..+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999988763
No 384
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.31 E-value=0.012 Score=48.11 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.+++.......+.-.|+|+|..|+|||||+..+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333433333444457899999999999999888764
No 385
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.30 E-value=0.076 Score=49.89 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=34.1
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI 229 (333)
Q Consensus 173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 229 (333)
+..+. ++.|.|++|+|||||+..+......... ..+.|++... +...+...+
T Consensus 239 l~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp CCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHH
T ss_pred cCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHH
Confidence 34455 8999999999999999998877643211 2455665543 344554444
No 386
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.26 E-value=0.014 Score=46.53 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.....|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999988754
No 387
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.024 Score=45.26 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.+.. +...+...|+|+|..|+|||||++.+.+.
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 33455567899999999999999998853
No 388
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.22 E-value=0.012 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.-|+++|..|+|||||++.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999988653
No 389
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.21 E-value=0.0098 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.+++|+|+||+|||||+..++.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999854
No 390
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.19 E-value=0.0082 Score=53.08 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~ 200 (333)
+.+|+|+||+|||||+..++-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999999983
No 391
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.18 E-value=0.012 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|+|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999887653
No 392
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.17 E-value=0.013 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-|+++|..|+|||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999987653
No 393
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.16 E-value=0.067 Score=49.82 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHHHhh----cCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH-H
Q 046889 180 IIGICGRGGIGKTTL-VKEIQKQAKEK----KMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL-V 245 (333)
Q Consensus 180 vi~I~G~~G~GKTtL-a~~v~~~~~~~----~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~-~ 245 (333)
.++|+|..|+|||+| +..+.+..... ++-+ .++++-+.+..+ ..++.+.+...=.+. ...+.+.. .
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 799999999999999 56777766521 1233 466777877654 344555544321111 11222222 1
Q ss_pred -----HHHHHHHHHc--cCceEEEEeCCCC
Q 046889 246 -----RASLLCKRIE--KQRVLVILDDLWV 268 (333)
Q Consensus 246 -----~~~~l~~~l~--~k~~LlVlDdv~~ 268 (333)
....+.+++. ++..|+++||+..
T Consensus 244 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1334666665 4889999999853
No 394
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.16 E-value=0.013 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-|+|+|..|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998864
No 395
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.15 E-value=0.012 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-.|+|+|..|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999988653
No 396
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.15 E-value=0.013 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-|+++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988654
No 397
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.13 E-value=0.013 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|+++|.+|+|||||+..+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68899999999999999998653
No 398
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.13 E-value=0.013 Score=45.82 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-|+|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999988654
No 399
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.12 E-value=0.012 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|..|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998754
No 400
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.12 E-value=0.0088 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
....+|.|+|++|+||||+++.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 445699999999999999999987654
No 401
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.12 E-value=0.013 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
....|+|+|+.|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999887653
No 402
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.08 E-value=0.018 Score=47.14 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 164 STMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 164 ~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..+..+..++.. .....+.|+||+|+||||+|..+.+...
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555555532 1123689999999999999999988763
No 403
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.07 E-value=0.014 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-|+|+|..|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 404
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.06 E-value=0.013 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999887754
No 405
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.06 E-value=0.039 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
..|.|.|+.|+||||+++.+......
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999988764
No 406
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.06 E-value=0.013 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|+.|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998754
No 407
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.06 E-value=0.014 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|.|+||.|+|||||+..+....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 489999999999999999998654
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.05 E-value=0.019 Score=48.72 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
..++.+.|.+|+|||||+..+.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999987765
No 409
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.04 E-value=0.014 Score=46.93 Aligned_cols=24 Identities=38% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|.|+|..|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999998776543
No 410
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.012 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-|+++|..|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998764
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.03 E-value=0.013 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+++|.+|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
No 412
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.03 E-value=0.095 Score=48.72 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=50.9
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHHHHhhcCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH-H----
Q 046889 180 IIGICGRGGIGKTTLV-KEIQKQAKEKKMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL-V---- 245 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~-~---- 245 (333)
.++|+|..|+|||+|+ ..+.+.. .-+ .++++-+.+..+ ..++.+.+...=.+. ...+.+.. .
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 7999999999999994 5666654 234 346777777654 344555554422221 11222222 1
Q ss_pred -HHHHHHHHHc--cCceEEEEeCCC
Q 046889 246 -RASLLCKRIE--KQRVLVILDDLW 267 (333)
Q Consensus 246 -~~~~l~~~l~--~k~~LlVlDdv~ 267 (333)
....+.+++. ++..|+++||+.
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1234666665 488999999885
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.01 E-value=0.014 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...|+|+|..|+|||||++.+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999998876
No 414
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.01 E-value=0.0064 Score=58.70 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
++.++|+|++|+|||||++.+.+...
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCC
Confidence 45799999999999999999987653
No 415
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.00 E-value=0.014 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-|+|+|..|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998865
No 416
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.99 E-value=0.039 Score=52.42 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHHh--hcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 157 YNFKSRESTMKDIMEAM--KDEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 157 ~~~~gr~~~~~~l~~~l--~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
+.++.|.++.+.+.... ......+|.++|+.|+||||+++.+......
T Consensus 349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 45666777777777766 2234568999999999999999999877653
No 417
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.018 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|.|+.|+||||+++.+....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998775
No 418
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.017 Score=47.45 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
....|.|+|+.|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988654
No 419
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.97 E-value=0.015 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|..|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 420
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.96 E-value=0.013 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~ 200 (333)
-|+|+|..|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998864
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.96 E-value=0.014 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~ 200 (333)
-|+|+|+.|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999998863
No 422
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.96 E-value=0.017 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
.+|+|.||.|+|||||+..+.....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4899999999999999999987653
No 423
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.93 E-value=0.013 Score=47.10 Aligned_cols=25 Identities=20% Similarity=0.581 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
+...|+|+|..|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998754
No 424
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.93 E-value=0.015 Score=45.87 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...|+|+|..|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998754
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.92 E-value=0.016 Score=45.36 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|..|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 426
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.92 E-value=0.016 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|.|+|+.|+|||||+..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988754
No 427
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.87 E-value=0.049 Score=50.61 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889 162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK 205 (333)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 205 (333)
....+..+...+..++ +.+.|.|++|+||||++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4556666666665544 389999999999999999998877543
No 428
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.87 E-value=0.023 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
...|+++|++|+|||||++.+.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998864
No 429
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.86 E-value=0.016 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-|+|+|..|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998654
No 430
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.86 E-value=0.018 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|.+|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988753
No 431
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.86 E-value=0.017 Score=45.55 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...|.|+|..|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998654
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.86 E-value=0.017 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|+|+|..|+|||||++.+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.85 E-value=0.017 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-|+|+|..|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.84 E-value=0.068 Score=43.51 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 231 (333)
.|+|=|..|+||||.++.+....+..+ .. ..+..-+........++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhh
Confidence 578889999999999999998887543 22 333333333333444445443
No 435
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.84 E-value=0.13 Score=47.73 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=50.7
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHHHHhhcCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 046889 180 IIGICGRGGIGKTTLV-KEIQKQAKEKKMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDELV----- 245 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~----- 245 (333)
.++|+|..|+|||+|+ ..+.+.. +-+ .++++-+.+..+ ..++.+.+...=.+. ...+.+...
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 7999999999999995 5666542 233 356788887654 344555544321111 112222221
Q ss_pred -HHHHHHHHHc--cCceEEEEeCCCC
Q 046889 246 -RASLLCKRIE--KQRVLVILDDLWV 268 (333)
Q Consensus 246 -~~~~l~~~l~--~k~~LlVlDdv~~ 268 (333)
....+.+++. ++..||++||+..
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1234555554 5889999999853
No 436
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.84 E-value=0.081 Score=57.29 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=59.9
Q ss_pred HHHHHHHH--HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----
Q 046889 164 STMKDIME--AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---- 237 (333)
Q Consensus 164 ~~~~~l~~--~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---- 237 (333)
..++.+.. -+..+. ++.|.|++|+|||||+..+........ ..++|++.....+.. .++.++...
T Consensus 369 ~~LD~lLG~GGl~~G~--lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~ 439 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLL 439 (2050)
T ss_dssp HHHHHHHSSSSEETTS--EEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCE
T ss_pred HHHHHHhccCCccCCc--EEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeE
Confidence 34444442 233445 999999999999999999987765322 356777776666543 256666531
Q ss_pred -CCCCCHHHHHHHHHHHHc-cCceEEEEeCCC
Q 046889 238 -LPDNDELVRASLLCKRIE-KQRVLVILDDLW 267 (333)
Q Consensus 238 -~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 267 (333)
....+.++....+..... .+.-++|+|.+.
T Consensus 440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 123345555555554443 466799999764
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.83 E-value=0.013 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
....|+|+|.+|+|||||++.+.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 44579999999999999999998653
No 438
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.81 E-value=0.015 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|..|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999998754
No 439
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.81 E-value=0.017 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.|+|+|..|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999998854
No 440
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.80 E-value=0.027 Score=49.22 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=24.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
....++|+|+|.||+||||++-.+......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 446679999999999999999988877654
No 441
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.78 E-value=0.017 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|.|+|..|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 442
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.77 E-value=0.033 Score=51.42 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHhhc-----------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 160 KSRESTMKDIMEAMKD-----------EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 160 ~gr~~~~~~l~~~l~~-----------~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.|-++.++.+...+.. .....++|+|++|+|||||++.+.+..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 3456677777666642 123579999999999999999998764
No 443
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.77 E-value=0.018 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-.|.|+|..|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998865
No 444
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.75 E-value=0.018 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|+|+|..|+|||||++.+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 468999999999999999887653
No 445
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.74 E-value=0.019 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|..|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999988653
No 446
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.74 E-value=0.014 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|..|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 478999999999999999987653
No 447
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.71 E-value=0.017 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.|+|+|..|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998754
No 448
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.71 E-value=0.018 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.++|+|++|+|||||.+.+.+.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 8999999999999999999873
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.71 E-value=0.019 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-|+++|..|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999988764
No 450
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.71 E-value=0.019 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.-|.|+|..|+|||||++.+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999988653
No 451
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.71 E-value=0.034 Score=51.13 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=53.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhc-CCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKK-MFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDELV----- 245 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~----- 245 (333)
.++|+|..|+|||+|+..+.+.....+ +-+ .++++-+.+..+ ..++.+.+...=.+. ...+.+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 689999999999999998887654311 111 456666776543 344555544321010 112222221
Q ss_pred -HHHHHHHHHc---cCceEEEEeCCCC
Q 046889 246 -RASLLCKRIE---KQRVLVILDDLWV 268 (333)
Q Consensus 246 -~~~~l~~~l~---~k~~LlVlDdv~~ 268 (333)
....+.+++. +++.||++||+..
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 2345777776 4788999999863
No 452
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.70 E-value=0.019 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...|+|+|..|+|||||++.+.+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987653
No 453
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.019 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-.|+|+|..|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987653
No 454
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.02 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|+|+|..|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999988754
No 455
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.70 E-value=0.036 Score=52.96 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQAKE 204 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 204 (333)
...+|.|.|+.|+||||+++.+......
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999887653
No 456
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.66 E-value=0.019 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
-.|+|+|..|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998763
No 457
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.66 E-value=0.017 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|++|+|||||.+.+.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997653
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.025 Score=45.64 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...-|+|+|..|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446899999999999999998865
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.65 E-value=0.02 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999988754
No 460
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.64 E-value=0.018 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..-|+|+|..|+|||||++.+.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 461
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.64 E-value=0.015 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+++|.+|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999998864
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.63 E-value=0.02 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...|+|+|..|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4468999999999999999987653
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.61 E-value=0.02 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
...|+|+|..|+|||||++.+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999988543
No 464
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.02 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...|+|+|..|+|||||++.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988765
No 465
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.02 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|+|+|..|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998653
No 466
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.59 E-value=0.051 Score=50.57 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=52.4
Q ss_pred cCCceEEEEEcCCCCcHHHHH-HHHHHHHHhhcCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH-
Q 046889 175 DEKVSIIGICGRGGIGKTTLV-KEIQKQAKEKKMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL- 244 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~- 244 (333)
.|+ .++|+|+.|+|||+|+ ..+.+.. .-+ .++++-+.+..+ ..++.+.+...=.+. ...+.+..
T Consensus 174 rGQ--R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~ 247 (515)
T 2r9v_A 174 RGQ--RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL 247 (515)
T ss_dssp TTC--BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred cCC--EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence 355 7999999999999994 5666654 234 346777777654 344555554321111 11222221
Q ss_pred H-----HHHHHHHHHcc--CceEEEEeCCCC
Q 046889 245 V-----RASLLCKRIEK--QRVLVILDDLWV 268 (333)
Q Consensus 245 ~-----~~~~l~~~l~~--k~~LlVlDdv~~ 268 (333)
. ....+.+++.+ +..|+++||+..
T Consensus 248 r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 248 QYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1 23346666654 889999999853
No 467
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.57 E-value=0.015 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQ 199 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~ 199 (333)
...|+|+|.+|+|||||++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999885
No 468
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.56 E-value=0.022 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|+|+|..|+|||||++.+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.53 E-value=0.032 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.148 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAK 203 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~ 203 (333)
++.++|+.|+||||++..+.....
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 788999999999999866665543
No 470
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.52 E-value=0.021 Score=46.29 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+...|+|+|..|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34478999999999999999988654
No 471
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.51 E-value=0.023 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-|.|+|..|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6889999999999999998764
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.022 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-|+|+|..|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999998864
No 473
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.51 E-value=0.023 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|..|+|||||++.+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998653
No 474
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.49 E-value=0.022 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..-|+|+|..|+|||||++.+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.49 E-value=0.021 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+|+|+|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999887653
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.48 E-value=0.023 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
--|+|+|..|+|||||++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 477
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.46 E-value=0.032 Score=52.44 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=53.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH-HHHHHHHHH----HhCC---------CCCCC
Q 046889 175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI-TKIQDEIAG----WLGI---------KELPD 240 (333)
Q Consensus 175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~----~l~~---------~~~~~ 240 (333)
.|+ .++|+|+.|+|||+|+..+.+. .+-+.++++-+.+..+. .++++.+-+ ..+. ....+
T Consensus 226 kGq--r~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd 299 (588)
T 3mfy_A 226 KGG--TAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSN 299 (588)
T ss_dssp TTC--EEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTT
T ss_pred cCC--eEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCC
Confidence 355 8999999999999999988654 23456778888877654 334433211 0110 01122
Q ss_pred CCHHH------HHHHHHHHHc--cCceEEEEeCCC
Q 046889 241 NDELV------RASLLCKRIE--KQRVLVILDDLW 267 (333)
Q Consensus 241 ~~~~~------~~~~l~~~l~--~k~~LlVlDdv~ 267 (333)
.+... ....+.+++. ++..||++|++.
T Consensus 300 ~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dslt 334 (588)
T 3mfy_A 300 MPVAAREASIYTGITIAEYFRDMGYDVALMADSTS 334 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence 22221 1234555554 488999999986
No 478
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.46 E-value=0.024 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|+.|+|||||++.+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 479
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.45 E-value=0.023 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|..|+|||||+..+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988654
No 480
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.42 E-value=0.024 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...|+|+|..|+|||||++.+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998764
No 481
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.40 E-value=0.17 Score=49.04 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHH-HHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889 163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTT-LVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA 230 (333)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTt-La~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 230 (333)
+...+.+...|...+ +..|.||+|+|||+ ++..|...... ...+.++...+..+..+++.+.
T Consensus 192 ~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence 455566666665555 78899999999996 45555544442 2356666666555555555543
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.40 E-value=0.028 Score=44.79 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.+...|+|+|..|+|||||++.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999987654
No 483
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.39 E-value=0.024 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.-|+|+|..|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987653
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.38 E-value=0.015 Score=55.97 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=31.6
Q ss_pred cccchHHHHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHHHH
Q 046889 158 NFKSRESTMKDIMEAMKDEKVS-----------IIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~~~~~-----------vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
.++|.+.....+...+..+..+ -+.++|+.|+|||+||+.+....
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3466666666665555444211 48899999999999999987654
No 485
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.37 E-value=0.025 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
...-|+|+|..|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998754
No 486
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.34 E-value=0.019 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-|.|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999977653
No 487
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.34 E-value=0.021 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 488
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.026 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
..|+|+|..|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998653
No 489
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.28 E-value=0.023 Score=49.89 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
+..+.|+|+|..|+|||||++.+.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999998865
No 490
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.28 E-value=0.021 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 046889 176 EKVSIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 176 ~~~~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.+...|+|+|..|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999998864
No 491
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.22 E-value=0.036 Score=51.18 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCeEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH------
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQAKEKKM--FDEVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL------ 244 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~------ 244 (333)
.++|+|..|+|||+|+..+.......+. =+.++++-+.+..+ ..++.+.+...=.+. ...+.+..
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 7889999999999999999877643211 12456666776543 345555554431111 11222222
Q ss_pred HHHHHHHHHHc---cCceEEEEeCCC
Q 046889 245 VRASLLCKRIE---KQRVLVILDDLW 267 (333)
Q Consensus 245 ~~~~~l~~~l~---~k~~LlVlDdv~ 267 (333)
.....+.+++. ++..||++||+.
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 12345667766 489999999874
No 492
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.20 E-value=0.027 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
++..|+|++|+|||||...++-
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
No 493
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.18 E-value=0.028 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|..|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
No 494
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.17 E-value=0.029 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
..|+|+|..|+|||||+..+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998854
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.15 E-value=0.029 Score=44.59 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046889 180 IIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 180 vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
-+.|.|++|+||||||..+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 6889999999999999988763
No 496
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.15 E-value=0.018 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889 177 KVSIIGICGRGGIGKTTLVKEIQKQA 202 (333)
Q Consensus 177 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 202 (333)
+...|+|.|+.|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44689999999999999999887654
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.028 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQK 200 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~ 200 (333)
.-|+|+|.+|+|||||+..+.+
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998863
No 498
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.12 E-value=0.028 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889 178 VSIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 178 ~~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.--|+|+|..|+|||||++.+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998744
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.03 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
.-|+|+|..|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 500
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.05 E-value=0.03 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 046889 179 SIIGICGRGGIGKTTLVKEIQKQ 201 (333)
Q Consensus 179 ~vi~I~G~~G~GKTtLa~~v~~~ 201 (333)
--|+|+|..|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988754
Done!