Query 046891
Match_columns 520
No_of_seqs 220 out of 1549
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 6E-142 1E-146 1114.0 43.2 469 48-518 31-508 (524)
2 PLN02849 beta-glucosidase 100.0 8E-135 2E-139 1089.7 47.5 477 6-519 3-483 (503)
3 PLN02814 beta-glucosidase 100.0 7E-134 2E-138 1082.7 44.9 454 49-518 23-482 (504)
4 PLN02998 beta-glucosidase 100.0 1E-133 3E-138 1079.2 45.6 458 48-518 25-487 (497)
5 PRK13511 6-phospho-beta-galact 100.0 3E-130 7E-135 1051.5 44.8 448 52-519 3-466 (469)
6 TIGR01233 lacG 6-phospho-beta- 100.0 5E-130 1E-134 1047.6 45.2 447 52-519 2-464 (467)
7 COG2723 BglB Beta-glucosidase/ 100.0 2E-130 4E-135 1021.2 39.6 444 52-519 2-453 (460)
8 PRK09593 arb 6-phospho-beta-gl 100.0 2E-128 4E-133 1037.9 44.4 444 51-519 3-473 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 1E-129 2E-134 1047.3 32.2 447 51-519 2-453 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 7E-128 1E-132 1032.8 45.1 442 53-519 3-472 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-127 6E-132 1027.1 45.6 445 49-519 1-473 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 2E-126 4E-131 1019.0 45.4 442 53-519 3-469 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5E-124 1E-128 993.5 41.8 427 54-512 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 2.5E-13 5.3E-18 135.8 24.9 250 128-511 1-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 2.3E-12 5.1E-17 135.8 9.1 109 107-219 10-141 (374)
16 PF07745 Glyco_hydro_53: Glyco 99.2 4.6E-09 1E-13 108.3 22.9 253 110-480 27-299 (332)
17 PRK10150 beta-D-glucuronidase; 99.1 1E-08 2.2E-13 114.8 24.0 262 107-517 313-593 (604)
18 PF00150 Cellulase: Cellulase 99.1 2.8E-10 6E-15 114.0 8.6 109 108-219 22-134 (281)
19 PF00331 Glyco_hydro_10: Glyco 99.1 3.9E-08 8.4E-13 101.7 23.6 304 54-514 6-318 (320)
20 PF01229 Glyco_hydro_39: Glyco 99.0 8.5E-09 1.8E-13 112.5 15.8 291 108-515 40-359 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.7 3.4E-06 7.4E-11 85.1 22.6 273 126-518 65-343 (345)
22 COG1874 LacA Beta-galactosidas 98.6 8.9E-08 1.9E-12 106.4 7.5 119 108-230 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.1 2.2E-05 4.7E-10 80.3 12.1 93 105-216 34-132 (298)
24 COG3867 Arabinogalactan endo-1 97.7 0.0067 1.4E-07 61.0 20.5 299 50-495 31-361 (403)
25 COG2730 BglC Endoglucanase [Ca 97.6 0.00023 5E-09 76.1 9.5 109 110-218 76-193 (407)
26 PF01301 Glyco_hydro_35: Glyco 97.4 0.00073 1.6E-08 70.0 9.0 109 108-217 25-151 (319)
27 PLN03059 beta-galactosidase; P 97.0 0.0075 1.6E-07 69.0 12.6 109 107-217 59-188 (840)
28 PLN02161 beta-amylase 96.7 0.0066 1.4E-07 65.2 9.3 111 103-218 113-262 (531)
29 PLN02803 beta-amylase 96.7 0.0054 1.2E-07 66.2 8.7 107 107-218 107-252 (548)
30 PF14587 Glyco_hydr_30_2: O-Gl 96.7 0.01 2.2E-07 62.3 10.1 100 117-217 57-184 (384)
31 PF01373 Glyco_hydro_14: Glyco 96.7 0.002 4.3E-08 67.8 4.7 106 106-217 15-151 (402)
32 PLN00197 beta-amylase; Provisi 96.6 0.0071 1.5E-07 65.5 8.7 107 107-218 127-272 (573)
33 PLN02801 beta-amylase 96.5 0.014 3.1E-07 62.8 9.6 107 107-217 37-182 (517)
34 PLN02905 beta-amylase 96.2 0.025 5.5E-07 62.1 9.7 111 103-217 282-431 (702)
35 PLN02705 beta-amylase 96.1 0.026 5.6E-07 61.8 9.5 109 105-217 266-413 (681)
36 PF11790 Glyco_hydro_cc: Glyco 96.0 0.034 7.4E-07 55.2 9.4 67 406-482 151-217 (239)
37 PF03198 Glyco_hydro_72: Gluca 94.9 0.62 1.3E-05 47.8 13.9 90 108-216 54-145 (314)
38 PF13204 DUF4038: Protein of u 94.9 0.14 3.1E-06 52.3 9.4 103 109-216 32-156 (289)
39 PF14488 DUF4434: Domain of un 94.5 0.2 4.4E-06 47.0 8.7 102 107-217 20-131 (166)
40 KOG0496 Beta-galactosidase [Ca 94.1 0.31 6.7E-06 54.2 10.3 109 108-217 50-176 (649)
41 PRK09525 lacZ beta-D-galactosi 92.6 0.37 8E-06 57.6 8.6 91 105-217 369-464 (1027)
42 PRK10340 ebgA cryptic beta-D-g 91.6 0.63 1.4E-05 55.7 9.0 92 105-216 353-450 (1021)
43 COG3250 LacZ Beta-galactosidas 88.5 2.1 4.5E-05 49.9 9.5 90 103-217 317-408 (808)
44 COG3934 Endo-beta-mannanase [C 86.6 0.29 6.2E-06 52.5 1.0 109 109-218 28-150 (587)
45 PF12891 Glyco_hydro_44: Glyco 85.9 1.7 3.7E-05 43.0 6.0 116 147-286 24-182 (239)
46 PF07488 Glyco_hydro_67M: Glyc 85.4 9 0.00019 39.3 10.9 87 106-205 56-150 (328)
47 smart00642 Aamy Alpha-amylase 83.7 2.5 5.5E-05 39.5 5.9 63 105-167 17-90 (166)
48 COG3664 XynB Beta-xylosidase [ 82.7 1.8 4E-05 45.8 4.9 99 116-219 14-117 (428)
49 PF00332 Glyco_hydro_17: Glyco 77.8 2.1 4.6E-05 44.2 3.5 87 408-508 212-307 (310)
50 PF14871 GHL6: Hypothetical gl 77.3 6.4 0.00014 35.5 6.0 58 111-169 4-66 (132)
51 PF10566 Glyco_hydro_97: Glyco 76.5 15 0.00032 37.4 8.9 119 80-202 9-149 (273)
52 PRK12313 glycogen branching en 69.6 19 0.00042 40.9 8.9 99 106-212 169-308 (633)
53 PRK05402 glycogen branching en 69.3 21 0.00045 41.4 9.2 99 106-212 264-403 (726)
54 PF02638 DUF187: Glycosyl hydr 68.6 19 0.00042 37.2 7.9 96 107-204 19-154 (311)
55 TIGR02402 trehalose_TreZ malto 68.4 19 0.00041 40.2 8.3 60 105-170 109-185 (542)
56 PLN02361 alpha-amylase 68.0 13 0.00029 39.8 6.8 66 104-169 26-100 (401)
57 PF00128 Alpha-amylase: Alpha 62.8 17 0.00038 36.1 6.2 57 110-168 7-73 (316)
58 PRK09441 cytoplasmic alpha-amy 62.7 13 0.00029 40.6 5.7 67 104-170 19-106 (479)
59 PLN00196 alpha-amylase; Provis 60.5 17 0.00036 39.4 5.9 66 105-170 42-117 (428)
60 PRK10340 ebgA cryptic beta-D-g 60.0 28 0.00062 41.9 8.2 76 421-517 505-600 (1021)
61 TIGR02403 trehalose_treC alpha 59.9 17 0.00038 40.5 6.1 59 104-168 24-96 (543)
62 cd06543 GH18_PF-ChiA-like PF-C 59.2 37 0.0008 34.8 7.9 79 114-205 19-105 (294)
63 cd07945 DRE_TIM_CMS Leptospira 58.2 24 0.00053 35.8 6.3 81 110-201 77-158 (280)
64 PRK05799 coproporphyrinogen II 58.0 17 0.00038 38.2 5.5 96 110-220 99-196 (374)
65 PRK12568 glycogen branching en 57.7 38 0.00083 39.2 8.3 93 106-204 268-401 (730)
66 TIGR01515 branching_enzym alph 56.4 60 0.0013 36.9 9.7 93 106-204 155-288 (613)
67 cd03174 DRE_TIM_metallolyase D 55.8 30 0.00065 34.1 6.5 82 110-204 77-159 (265)
68 PRK10933 trehalose-6-phosphate 55.5 20 0.00043 40.1 5.6 63 104-168 30-102 (551)
69 cd07939 DRE_TIM_NifV Streptomy 54.8 34 0.00074 34.2 6.7 80 110-204 72-152 (259)
70 TIGR02090 LEU1_arch isopropylm 54.7 31 0.00067 36.5 6.6 61 109-169 73-134 (363)
71 PRK14706 glycogen branching en 54.3 40 0.00087 38.5 7.8 89 114-204 175-299 (639)
72 cd06593 GH31_xylosidase_YicI Y 53.6 75 0.0016 32.5 9.1 105 109-216 26-160 (308)
73 PRK14041 oxaloacetate decarbox 53.3 40 0.00086 37.0 7.3 56 105-173 88-148 (467)
74 COG5309 Exo-beta-1,3-glucanase 52.7 50 0.0011 33.4 7.2 53 100-168 56-108 (305)
75 PRK12858 tagatose 1,6-diphosph 52.5 46 0.001 34.9 7.4 57 113-172 112-168 (340)
76 TIGR00433 bioB biotin syntheta 52.4 37 0.0008 34.3 6.6 54 110-166 123-177 (296)
77 PLN02447 1,4-alpha-glucan-bran 52.3 26 0.00056 40.7 5.9 95 104-204 247-383 (758)
78 PRK12399 tagatose 1,6-diphosph 51.9 56 0.0012 33.9 7.6 91 113-212 111-204 (324)
79 PF02055 Glyco_hydro_30: O-Gly 51.5 65 0.0014 35.6 8.7 98 411-516 319-420 (496)
80 PRK14040 oxaloacetate decarbox 51.1 45 0.00098 37.7 7.5 56 105-173 90-150 (593)
81 PRK04161 tagatose 1,6-diphosph 50.9 60 0.0013 33.8 7.7 92 112-212 112-206 (329)
82 PRK14705 glycogen branching en 50.6 70 0.0015 39.3 9.3 89 110-204 768-897 (1224)
83 PLN02784 alpha-amylase 50.4 39 0.00085 39.6 6.9 66 104-169 518-592 (894)
84 TIGR02456 treS_nterm trehalose 50.2 24 0.00053 39.3 5.2 57 106-168 27-97 (539)
85 PF01736 Polyoma_agno: Polyoma 49.5 17 0.00038 27.4 2.6 30 2-36 22-51 (62)
86 PF12876 Cellulase-like: Sugar 49.3 8.6 0.00019 31.8 1.1 19 199-217 1-22 (88)
87 PRK12581 oxaloacetate decarbox 48.6 32 0.00069 37.7 5.6 56 105-173 98-158 (468)
88 COG1523 PulA Type II secretory 48.5 33 0.00072 39.4 6.0 55 113-167 206-285 (697)
89 PRK09505 malS alpha-amylase; R 48.2 33 0.00071 39.5 5.9 63 109-171 232-318 (683)
90 cd07948 DRE_TIM_HCS Saccharomy 47.3 29 0.00062 35.0 4.7 60 110-169 74-134 (262)
91 PRK05692 hydroxymethylglutaryl 47.3 47 0.001 33.9 6.3 84 109-201 81-166 (287)
92 cd07944 DRE_TIM_HOA_like 4-hyd 47.2 66 0.0014 32.4 7.4 67 110-204 85-151 (266)
93 cd06601 GH31_lyase_GLase GLase 46.3 92 0.002 32.5 8.5 71 150-222 67-140 (332)
94 PRK14511 maltooligosyl trehalo 46.3 55 0.0012 38.7 7.3 59 106-170 19-94 (879)
95 PHA02621 agnoprotein; Provisio 46.2 21 0.00045 27.4 2.6 32 2-38 22-53 (68)
96 TIGR02660 nifV_homocitr homoci 45.4 54 0.0012 34.6 6.7 80 110-204 75-155 (365)
97 PLN02746 hydroxymethylglutaryl 44.9 55 0.0012 34.5 6.5 84 109-201 123-208 (347)
98 PRK10785 maltodextrin glucosid 44.4 38 0.00083 38.3 5.7 55 108-168 180-247 (598)
99 PF02065 Melibiase: Melibiase; 44.2 64 0.0014 34.6 7.0 92 108-204 59-183 (394)
100 PRK12331 oxaloacetate decarbox 43.3 80 0.0017 34.5 7.7 51 110-173 99-149 (448)
101 PRK03705 glycogen debranching 42.9 52 0.0011 37.7 6.4 55 113-168 185-263 (658)
102 PRK08599 coproporphyrinogen II 42.7 89 0.0019 32.9 7.9 95 110-220 100-197 (377)
103 PRK11858 aksA trans-homoaconit 42.7 70 0.0015 34.0 7.0 58 110-167 78-136 (378)
104 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.3 1.2E+02 0.0026 30.7 8.4 68 109-201 93-160 (275)
105 PF03659 Glyco_hydro_71: Glyco 42.2 88 0.0019 33.4 7.7 51 107-167 17-67 (386)
106 PF03511 Fanconi_A: Fanconi an 41.6 17 0.00038 28.2 1.6 39 131-171 19-57 (64)
107 cd06602 GH31_MGAM_SI_GAA This 41.2 1.4E+02 0.0029 31.3 8.8 68 150-218 69-168 (339)
108 TIGR02635 RhaI_grampos L-rhamn 41.0 1.5E+02 0.0032 31.7 9.1 88 101-206 35-131 (378)
109 cd06603 GH31_GANC_GANAB_alpha 40.2 1.3E+02 0.0028 31.3 8.5 71 150-220 67-167 (339)
110 PRK14510 putative bifunctional 40.0 37 0.0008 41.8 5.0 60 104-167 182-267 (1221)
111 cd06598 GH31_transferase_CtsZ 39.9 1.1E+02 0.0025 31.5 7.9 34 183-219 134-168 (317)
112 TIGR01210 conserved hypothetic 39.7 1.2E+02 0.0027 31.2 8.2 108 110-231 117-229 (313)
113 TIGR02401 trehalose_TreY malto 39.1 52 0.0011 38.6 5.7 60 106-171 15-91 (825)
114 cd07943 DRE_TIM_HOA 4-hydroxy- 38.6 1.2E+02 0.0025 30.4 7.6 64 110-200 88-151 (263)
115 cd06591 GH31_xylosidase_XylS X 38.4 1.6E+02 0.0034 30.4 8.7 70 149-219 68-163 (319)
116 PRK09058 coproporphyrinogen II 37.9 96 0.0021 33.7 7.3 105 110-230 163-270 (449)
117 KOG2233 Alpha-N-acetylglucosam 37.6 61 0.0013 35.4 5.5 111 106-216 77-248 (666)
118 TIGR03581 EF_0839 conserved hy 37.6 99 0.0021 30.4 6.4 74 107-192 135-230 (236)
119 cd02874 GH18_CFLE_spore_hydrol 36.4 1.4E+02 0.003 30.5 7.9 84 113-204 16-103 (313)
120 cd06592 GH31_glucosidase_KIAA1 36.1 1.4E+02 0.003 30.6 7.9 106 109-217 32-167 (303)
121 PLN02389 biotin synthase 35.6 97 0.0021 33.0 6.7 57 108-167 176-233 (379)
122 TIGR02629 L_rham_iso_rhiz L-rh 35.5 4.7E+02 0.01 28.2 11.7 88 110-211 73-171 (412)
123 PF05089 NAGLU: Alpha-N-acetyl 35.4 96 0.0021 32.4 6.4 109 106-216 18-184 (333)
124 PF10566 Glyco_hydro_97: Glyco 34.8 49 0.0011 33.6 4.2 71 109-190 108-178 (273)
125 PLN02960 alpha-amylase 34.8 67 0.0014 37.9 5.7 95 104-204 413-549 (897)
126 cd07941 DRE_TIM_LeuA3 Desulfob 34.2 1.1E+02 0.0024 30.8 6.6 80 111-201 82-162 (273)
127 TIGR01108 oadA oxaloacetate de 33.8 1.3E+02 0.0029 34.0 7.7 93 109-218 93-205 (582)
128 cd06542 GH18_EndoS-like Endo-b 33.7 1.2E+02 0.0026 29.9 6.7 55 146-204 50-104 (255)
129 cd07938 DRE_TIM_HMGL 3-hydroxy 33.5 1.2E+02 0.0026 30.6 6.8 83 110-201 76-160 (274)
130 TIGR00612 ispG_gcpE 1-hydroxy- 33.3 1.7E+02 0.0037 30.7 7.7 86 101-200 76-161 (346)
131 PRK08195 4-hyroxy-2-oxovalerat 33.3 83 0.0018 32.9 5.7 68 110-205 91-158 (337)
132 PRK13398 3-deoxy-7-phosphohept 33.2 1.4E+02 0.0031 30.2 7.2 72 102-176 36-107 (266)
133 cd06545 GH18_3CO4_chitinase Th 32.5 1E+02 0.0022 30.5 6.0 73 127-204 27-99 (253)
134 COG0366 AmyA Glycosidases [Car 32.1 61 0.0013 35.0 4.7 68 111-178 33-111 (505)
135 COG1501 Alpha-glucosidases, fa 31.3 1.5E+02 0.0033 34.6 7.9 98 120-222 295-422 (772)
136 COG3589 Uncharacterized conser 31.1 95 0.0021 32.5 5.5 72 110-195 19-90 (360)
137 TIGR03217 4OH_2_O_val_ald 4-hy 31.0 1.4E+02 0.0031 31.1 7.0 46 110-168 90-135 (333)
138 cd06600 GH31_MGAM-like This fa 30.9 2.7E+02 0.0058 28.7 9.0 68 150-218 67-163 (317)
139 PRK14507 putative bifunctional 30.7 1.1E+02 0.0025 38.7 7.0 60 106-171 757-833 (1693)
140 TIGR01232 lacD tagatose 1,6-di 30.7 1.9E+02 0.0041 30.1 7.6 92 112-212 111-205 (325)
141 PF04914 DltD_C: DltD C-termin 30.7 1.7E+02 0.0037 26.3 6.5 51 149-206 38-91 (130)
142 PF04646 DUF604: Protein of un 30.7 22 0.00048 35.6 0.8 72 156-230 77-148 (255)
143 PRK06294 coproporphyrinogen II 30.6 1.7E+02 0.0038 30.8 7.7 94 110-219 103-199 (370)
144 TIGR00539 hemN_rel putative ox 30.6 1.9E+02 0.0042 30.2 8.0 61 110-174 100-163 (360)
145 TIGR03234 OH-pyruv-isom hydrox 30.6 1.2E+02 0.0027 29.6 6.2 66 105-173 82-150 (254)
146 cd07947 DRE_TIM_Re_CS Clostrid 30.3 1.6E+02 0.0034 30.0 7.0 59 109-167 76-135 (279)
147 PRK07094 biotin synthase; Prov 29.7 89 0.0019 32.0 5.2 56 108-166 127-184 (323)
148 PF00150 Cellulase: Cellulase 29.6 98 0.0021 30.4 5.4 56 149-207 23-78 (281)
149 PRK09432 metF 5,10-methylenete 29.3 1.2E+02 0.0026 31.1 6.0 73 147-219 189-283 (296)
150 cd06604 GH31_glucosidase_II_Ma 29.1 2.9E+02 0.0063 28.7 9.0 67 150-219 67-163 (339)
151 COG0821 gcpE 1-hydroxy-2-methy 29.1 1.7E+02 0.0038 30.6 6.9 73 117-201 92-164 (361)
152 COG3045 CreA Uncharacterized p 28.8 41 0.00089 30.9 2.2 29 1-29 3-31 (165)
153 PRK13792 lysozyme inhibitor; P 28.7 49 0.0011 29.7 2.6 21 51-71 33-53 (127)
154 cd00311 TIM Triosephosphate is 28.5 1.3E+02 0.0029 29.9 6.0 47 114-167 78-124 (242)
155 TIGR00419 tim triosephosphate 28.4 1.3E+02 0.0028 29.2 5.7 43 114-167 75-117 (205)
156 PTZ00445 p36-lilke protein; Pr 27.3 1.1E+02 0.0024 30.0 5.0 56 113-169 35-100 (219)
157 PRK12677 xylose isomerase; Pro 27.2 4E+02 0.0087 28.4 9.7 71 109-186 33-104 (384)
158 smart00729 Elp3 Elongator prot 26.3 3.2E+02 0.007 24.8 8.1 56 109-167 99-157 (216)
159 KOG0470 1,4-alpha-glucan branc 26.1 76 0.0016 36.4 4.1 64 106-169 253-333 (757)
160 PRK00694 4-hydroxy-3-methylbut 26.0 3.2E+02 0.0069 30.8 8.7 80 111-202 49-157 (606)
161 TIGR02100 glgX_debranch glycog 26.0 1.2E+02 0.0026 35.0 5.8 56 113-168 190-266 (688)
162 TIGR03471 HpnJ hopanoid biosyn 25.8 2.1E+02 0.0047 31.1 7.6 60 110-173 287-348 (472)
163 cd02932 OYE_YqiM_FMN Old yello 25.8 7.5E+02 0.016 25.5 14.5 40 131-170 61-100 (336)
164 cd06599 GH31_glycosidase_Aec37 25.7 2.8E+02 0.0061 28.5 8.1 35 183-218 137-171 (317)
165 PRK00366 ispG 4-hydroxy-3-meth 25.4 2.1E+02 0.0045 30.2 6.8 54 147-200 117-170 (360)
166 PRK13209 L-xylulose 5-phosphat 24.8 5.1E+02 0.011 25.6 9.6 52 109-164 23-74 (283)
167 PLN03153 hypothetical protein; 24.2 70 0.0015 35.4 3.3 67 156-231 327-400 (537)
168 cd07940 DRE_TIM_IPMS 2-isoprop 24.1 2.2E+02 0.0047 28.5 6.7 80 110-204 72-156 (268)
169 TIGR00423 radical SAM domain p 24.0 4.2E+02 0.0092 27.0 9.0 53 109-167 106-165 (309)
170 PRK06256 biotin synthase; Vali 23.8 1.3E+02 0.0028 31.1 5.2 56 108-166 150-206 (336)
171 TIGR02631 xylA_Arthro xylose i 23.7 4.1E+02 0.0089 28.3 9.0 72 108-186 33-105 (382)
172 PTZ00445 p36-lilke protein; Pr 23.5 1.2E+02 0.0025 29.9 4.3 51 147-201 29-89 (219)
173 PRK05474 xylose isomerase; Pro 23.4 9.8E+02 0.021 26.0 13.8 72 109-187 81-157 (437)
174 PRK10426 alpha-glucosidase; Pr 23.3 5E+02 0.011 29.7 10.1 106 109-216 223-364 (635)
175 cd02803 OYE_like_FMN_family Ol 23.1 5.1E+02 0.011 26.4 9.5 39 132-170 62-100 (327)
176 PLN02925 4-hydroxy-3-methylbut 23.1 2.5E+02 0.0054 32.4 7.3 52 149-201 212-263 (733)
177 PF04551 GcpE: GcpE protein; 22.5 4.7E+02 0.01 27.7 8.8 57 110-178 34-91 (359)
178 KOG1065 Maltase glucoamylase a 22.3 3.4E+02 0.0073 31.9 8.3 105 110-221 314-454 (805)
179 PRK08508 biotin synthase; Prov 21.9 1.9E+02 0.004 29.3 5.8 56 109-167 101-157 (279)
180 PRK14567 triosephosphate isome 21.6 1.9E+02 0.0042 29.0 5.7 48 114-168 79-126 (253)
181 PF13812 PPR_3: Pentatricopept 21.5 61 0.0013 20.6 1.5 15 149-163 20-34 (34)
182 COG2876 AroA 3-deoxy-D-arabino 21.5 4.9E+02 0.011 26.5 8.3 81 100-199 52-132 (286)
183 PRK09856 fructoselysine 3-epim 21.3 1.3E+02 0.0028 29.8 4.4 61 104-165 87-147 (275)
184 PF00682 HMGL-like: HMGL-like 21.2 1.8E+02 0.0039 28.2 5.4 79 110-202 66-149 (237)
185 PF04055 Radical_SAM: Radical 21.0 1.5E+02 0.0031 26.0 4.3 52 110-163 90-143 (166)
186 PF01261 AP_endonuc_2: Xylose 20.9 99 0.0022 28.6 3.4 62 104-165 68-130 (213)
187 PRK15492 triosephosphate isome 20.8 2.1E+02 0.0044 28.9 5.7 48 114-168 88-135 (260)
188 PRK05628 coproporphyrinogen II 20.6 4.1E+02 0.0088 27.9 8.3 95 110-220 108-205 (375)
189 TIGR02104 pulA_typeI pullulana 20.5 2E+02 0.0044 32.5 6.3 23 146-168 228-250 (605)
190 PF11775 CobT_C: Cobalamin bio 20.5 2.9E+02 0.0062 27.2 6.4 67 402-474 116-185 (219)
191 TIGR00542 hxl6Piso_put hexulos 20.3 7.3E+02 0.016 24.5 9.7 82 109-201 18-101 (279)
192 PRK09282 pyruvate carboxylase 20.2 3.2E+02 0.007 31.0 7.7 93 109-218 98-210 (592)
193 TIGR02630 xylose_isom_A xylose 20.2 1.1E+03 0.025 25.5 13.9 72 109-187 80-156 (434)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-142 Score=1114.03 Aligned_cols=469 Identities=54% Similarity=1.039 Sum_probs=433.7
Q ss_pred ccccCCCCCCceecccccCcccCCCcCCCCCcCeeeeeccc-CCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeec
Q 046891 48 GLTRKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVH-TPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRF 126 (520)
Q Consensus 48 ~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~-~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rf 126 (520)
.+.+..||++|+||+||||||+|||+++|||++|+||.|+| .|+++.++.++++|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 67899999999999999999999999999999999999998 46677888889999999999999999999999999999
Q ss_pred CCcccccccCCC--CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046891 127 SISWSRIFPQGA--GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 127 si~Wsri~P~~~--g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 204 (520)
||+||||+|.|+ +.+|++||+||++||++|+++||+|+|||+|||+||+|+++||||+|++++++|.+||++||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999997 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEe
Q 046891 205 DRVKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILL 284 (520)
Q Consensus 205 ~~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~ 284 (520)
|+||+|+|||||++++..||..|..|||+|+.+..+|..|++.+++|+|+||||||||+||++||+.++..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999997767999999999999999999999999999999999889999999999
Q ss_pred eccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeC
Q 046891 285 DFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFD 364 (520)
Q Consensus 285 ~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~ 364 (520)
+..|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|++.+++|||.||++|+++|||+.||+|||||++.++++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999989999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CCCCC-CCCCCCCCCCCccccccCCC-CcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCC--CCCcC
Q 046891 365 PPWPQ-SNISSYANDWDVGYAYDRNG-VPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPS--NYTLT 440 (520)
Q Consensus 365 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~--~~~~~ 440 (520)
...+. ...+++..|..+.. ..++ .+.+..+.+.|..++|+||+++|++++++|+||||||||||+++.. ..+..
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~ 428 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLE 428 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchh
Confidence 65422 12233444444333 1222 3455556678989999999999999999999999999999999832 23445
Q ss_pred cccCchhHHHHHHHHHHHHHHHHH-cCCCEEEEeeccCccccccCCCCcCccceEEecC-CCCCccccchHHHHHHHHhh
Q 046891 441 HLLHDTTRINYYRDYISQLKKAID-DGANVTGYFAWSLLDNFEWLLGYTARFGITYVDF-DTLQRIPKMSAYWFKQLLQR 518 (520)
Q Consensus 441 ~~i~D~~Ri~yl~~hl~~~~~Ai~-dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~-~~~~R~~K~S~~~y~~ii~~ 518 (520)
..++|..||+|++.||++|++||. +||||+|||+|||||||||..||+.||||++||| +.++|+||.|+.||+++++.
T Consensus 429 ~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 429 VALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 678999999999999999999995 9999999999999999999999999999999999 56999999999999999985
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=8e-135 Score=1089.73 Aligned_cols=477 Identities=41% Similarity=0.846 Sum_probs=421.4
Q ss_pred hHHHHHHHHHHHhhccccceeccccccccccccccCCCCcccccccCCCCCCceecccccCcccCCCcCCCCCcCeeeee
Q 046891 6 YAVRAFVVFLVCNFAHSAKIACIEGYDTENARIACNDGFDTAGLTRKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDV 85 (520)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~ 85 (520)
.+|.||.+||++.+.-++ | +..+++.+||++|+||+|||||||||++++||||+|+||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~ 61 (503)
T PLN02849 3 LILSLFTIFLLLALSSGK----------------C-----SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDT 61 (503)
T ss_pred hHHHHHHHHHHHhccccc----------------c-----cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceee
Confidence 367888888888654433 1 3346678899999999999999999999999999999999
Q ss_pred cccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 046891 86 YVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYA 165 (520)
Q Consensus 86 ~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~v 165 (520)
|.+.+ ++.++++||||||||+|||+|||+||+++|||||+||||+|+|+|.+|++||+||+++|++|+++||+|+|
T Consensus 62 ~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V 137 (503)
T PLN02849 62 FLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV 137 (503)
T ss_pred eeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 98754 34578899999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccccccccccCCCCCCCCCCcccCCCCCCC
Q 046891 166 NLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGD 245 (520)
Q Consensus 166 tL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~ 245 (520)
||+|||+|+||+++||||+|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+......|.+++
T Consensus 138 TL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~ 217 (503)
T PLN02849 138 TLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGN 217 (503)
T ss_pred eecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999996431111354444
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChh
Q 046891 246 SGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRT 325 (520)
Q Consensus 246 ~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~ 325 (520)
+.++.++++||+++|||+||+++|++++..|+++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.
T Consensus 218 ~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~ 297 (503)
T PLN02849 218 SSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDE 297 (503)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHH
Confidence 55678999999999999999999997644578999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeCCCCCCC--CCCCCCCCCCccccccCCCCcccCCCCCCcccc
Q 046891 326 MQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPPWPQS--NISSYANDWDVGYAYDRNGVPIGRRANSGWLYI 403 (520)
Q Consensus 326 ~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i 403 (520)
|++.+++++|.|+++|+++|++++||||||||++.+|+....... ..+.+.. .. +.+....+++|| +|
T Consensus 298 ~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~gw-~i 367 (503)
T PLN02849 298 MKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYS--------DM-GVSLGKFSAFEY-AV 367 (503)
T ss_pred HHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCcccc--------cc-CCCCCccCCCCC-eE
Confidence 999999899999999999999999999999999999975321100 0000100 00 112223457899 69
Q ss_pred ChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcccccc
Q 046891 404 VPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEW 483 (520)
Q Consensus 404 ~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW 483 (520)
+|+||+++|++++++|++|||||||||++..++ .+++++|++||+||++||++|++||+|||||+||++|||+|||||
T Consensus 368 ~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~--~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW 445 (503)
T PLN02849 368 APWAMESVLEYIKQSYGNPPVYILENGTPMKQD--LQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYEL 445 (503)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC--CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhch
Confidence 999999999999999999899999999998543 356899999999999999999999999999999999999999999
Q ss_pred CCCCcCccceEEecCCC--CCccccchHHHHHHHHhhc
Q 046891 484 LLGYTARFGITYVDFDT--LQRIPKMSAYWFKQLLQRD 519 (520)
Q Consensus 484 ~~Gy~~RfGL~~VD~~~--~~R~~K~S~~~y~~ii~~~ 519 (520)
.+||++|||||+||++| ++|+||+|++|||++|++.
T Consensus 446 ~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~ 483 (503)
T PLN02849 446 LKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGN 483 (503)
T ss_pred hccccCccceEEECCCCCCcceecccHHHHHHHHHHhC
Confidence 99999999999999974 5999999999999999864
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=6.9e-134 Score=1082.70 Aligned_cols=454 Identities=41% Similarity=0.821 Sum_probs=405.2
Q ss_pred cccCCCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCC
Q 046891 49 LTRKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSI 128 (520)
Q Consensus 49 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi 128 (520)
|.+.+||++|+||+|||||||||++++||||+|+||.|++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 66778999999999999999999999999999999999872 23468899999999999999999999999999999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcc
Q 046891 129 SWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVK 208 (520)
Q Consensus 129 ~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~ 208 (520)
+||||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCccccccccccCCCCCCCCCCcccC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeecc
Q 046891 209 NWYTFNEPRVIAALGFDSGINPPSRCSKEVN-NCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFV 287 (520)
Q Consensus 209 ~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~ 287 (520)
+|+|||||++++..||..|.. ||.++.... .|.++++.++.++++||+++|||+||++||++++..|+++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999884 886542111 354445556789999999999999999999987666899999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeCCCC
Q 046891 288 WYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPPW 367 (520)
Q Consensus 288 ~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~~ 367 (520)
+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred CCCC---CCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccC
Q 046891 368 PQSN---ISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLH 444 (520)
Q Consensus 368 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~ 444 (520)
+... ..++..+.+. ...+..+.+++|| +|+|+||+.+|++++++|++|||||||||++..+ +++++
T Consensus 338 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~i~ 406 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGA------YIISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----DSTLQ 406 (504)
T ss_pred CCcccccCCCccccccc------ccCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC----CCccc
Confidence 1000 0011000000 0012235677899 5999999999999999999989999999999742 47899
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCC--CCCccccchHHHHHHHHhh
Q 046891 445 DTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFD--TLQRIPKMSAYWFKQLLQR 518 (520)
Q Consensus 445 D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~--~~~R~~K~S~~~y~~ii~~ 518 (520)
|++||+||++||++|++||+|||||+|||+|||||||||.+||++||||||||++ +++|+||+|++||+++|++
T Consensus 407 D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 407 DTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999996 4699999999999999975
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.2e-133 Score=1079.22 Aligned_cols=458 Identities=47% Similarity=0.918 Sum_probs=406.9
Q ss_pred ccccCCCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecC
Q 046891 48 GLTRKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFS 127 (520)
Q Consensus 48 ~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfs 127 (520)
.|++.+||++|+||+|||||||||++++||||+|+||.|.| ++. .+..++++||||||||+|||+|||+||+++||||
T Consensus 25 ~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfS 102 (497)
T PLN02998 25 KYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFS 102 (497)
T ss_pred cCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEee
Confidence 36778899999999999999999999999999999999988 442 2224789999999999999999999999999999
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 046891 128 ISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRV 207 (520)
Q Consensus 128 i~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V 207 (520)
|+||||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++|+++|||+|
T Consensus 103 IsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 103 ISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred ccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCccccccccccCCCCCCCCCCcccC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeec
Q 046891 208 KNWYTFNEPRVIAALGFDSGINPPSRCSKEVN-NCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDF 286 (520)
Q Consensus 208 ~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~ 286 (520)
++|+|||||++++..||..|.+|||.+....+ .|..+++.++.++++||+++|||+|+++||+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 99999999999999999999999996442111 36655656778999999999999999999998655688999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeCCC
Q 046891 287 VWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPP 366 (520)
Q Consensus 287 ~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~ 366 (520)
.+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.||++|+++|++++||||||||++.+|+...
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~ 342 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNS 342 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999997532
Q ss_pred CC-CCCCCCCCCCCCccccccCCCCcccCCC-CCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccC
Q 046891 367 WP-QSNISSYANDWDVGYAYDRNGVPIGRRA-NSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLH 444 (520)
Q Consensus 367 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~ 444 (520)
.. ......+..+.+... .+.+..+ .++| +|+|+||+++|++++++|++|||||||||+++.+ +++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~v~ 411 (497)
T PLN02998 343 SSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH----SSSLV 411 (497)
T ss_pred CcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC----CCccc
Confidence 11 000011111100000 0111223 3678 6999999999999999999989999999999742 47899
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCC--CCCccccchHHHHHHHHhh
Q 046891 445 DTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFD--TLQRIPKMSAYWFKQLLQR 518 (520)
Q Consensus 445 D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~--~~~R~~K~S~~~y~~ii~~ 518 (520)
|++||+||++||++|++||+|||||+|||+|||+|||||.+||++||||||||++ +++|+||+|++|||++|++
T Consensus 412 D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 412 DTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999996 5799999999999999985
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=3.3e-130 Score=1051.47 Aligned_cols=448 Identities=36% Similarity=0.647 Sum_probs=394.0
Q ss_pred CCCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCccc
Q 046891 52 KSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISWS 131 (520)
Q Consensus 52 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Ws 131 (520)
.+||++|+||+|||||||||++++||||+|+||+|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 459999999999999999999999999999999998866653 6899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEE
Q 046891 132 RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVKNWY 211 (520)
Q Consensus 132 ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~ 211 (520)
||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||++||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999987 9999999999999999999999999 99999
Q ss_pred EecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeecccccc
Q 046891 212 TFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFVWYEP 291 (520)
Q Consensus 212 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P 291 (520)
|||||++++..||..|.+|||.+.. .++.++++||+++|||+||++||+.. |+++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 9999999999999999999996431 24689999999999999999999863 7899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhc------CCCCCCHHHHhhhcC---CccEEEEecCCcee
Q 046891 292 HS-RSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGE------RLPKFTPEEVAMVKG---SYDYLGVNQYTSYY 361 (520)
Q Consensus 292 ~~-~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~------~lp~ft~ed~~~ikg---s~DFlGiNyYt~~~ 361 (520)
.+ ++|+|++||++++++.++||+||+++|+||+.|++.++. ..|.||++|+++|++ ++||||||||++.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 98 899999999999999999999999999999999987741 124799999999974 58999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCcccc-----ccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCC-CcEEEecCCCCCCC
Q 046891 362 MFDPPWPQSNISSYANDWDVGYA-----YDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGN-PTVMLSENGMDNPS 435 (520)
Q Consensus 362 v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG~~~~~ 435 (520)
|+..................... ......+..+.+++|| +|+|+||+++|++++++|++ |||||||||++..+
T Consensus 304 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d 382 (469)
T PRK13511 304 MRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKD 382 (469)
T ss_pred eecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCC
Confidence 97532110000000000000000 0000012224567899 59999999999999999997 68999999999865
Q ss_pred CCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCCCCCccccchHHHHHHH
Q 046891 436 NYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFDTLQRIPKMSAYWFKQL 515 (520)
Q Consensus 436 ~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~~K~S~~~y~~i 515 (520)
+.+.+++++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++|++|+||+|++||+++
T Consensus 383 ~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~ 462 (469)
T PRK13511 383 EFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKL 462 (469)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHHHHHHH
Confidence 55556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 046891 516 LQRD 519 (520)
Q Consensus 516 i~~~ 519 (520)
|++.
T Consensus 463 i~~~ 466 (469)
T PRK13511 463 AETK 466 (469)
T ss_pred HHhC
Confidence 9864
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=5.5e-130 Score=1047.60 Aligned_cols=447 Identities=36% Similarity=0.643 Sum_probs=392.5
Q ss_pred CCCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCccc
Q 046891 52 KSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISWS 131 (520)
Q Consensus 52 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Ws 131 (520)
.+||++|+||+|||||||||+++++|||+|+||.+.+.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 35999999999999999999999999999999998875544 36789999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEE
Q 046891 132 RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVKNWY 211 (520)
Q Consensus 132 ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~ 211 (520)
||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||++||++||+ |++|+
T Consensus 78 RI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 78 RIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred hccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999987 9999999999999999999999998 99999
Q ss_pred EecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeecccccc
Q 046891 212 TFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFVWYEP 291 (520)
Q Consensus 212 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P 291 (520)
|||||++++..||+.|.+|||.+.. .++.++++||+++|||+||++||++. ++++||++++..+++|
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P 222 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYP 222 (467)
T ss_pred EecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEE
Confidence 9999999999999999999996321 24689999999999999999999863 7899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcC------CCCCCHHHHhhh---cCCccEEEEecCCcee
Q 046891 292 HS-RSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGER------LPKFTPEEVAMV---KGSYDYLGVNQYTSYY 361 (520)
Q Consensus 292 ~~-~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~------lp~ft~ed~~~i---kgs~DFlGiNyYt~~~ 361 (520)
.+ ++|+|++||++++++.++||+||+++|+||+.|++.++.+ +|.||++|+++| ++++||||||||++.+
T Consensus 223 ~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~ 302 (467)
T TIGR01233 223 YDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDW 302 (467)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEcccccee
Confidence 97 8999999999999998999999999999999999987532 377999999999 5899999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCcc---ccc-cCCCCc-ccCCCCCCccccChHHHHHHHHHHHHHcCC-CcEEEecCCCCCCC
Q 046891 362 MFDPPWPQSNISSYANDWDVG---YAY-DRNGVP-IGRRANSGWLYIVPWGLYNALMYVKERYGN-PTVMLSENGMDNPS 435 (520)
Q Consensus 362 v~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG~~~~~ 435 (520)
|+................... ... .....+ ..+.+++|| +|+|+||+.+|++++++|++ |||||||||++..+
T Consensus 303 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d 381 (467)
T TIGR01233 303 MQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKD 381 (467)
T ss_pred eccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCC
Confidence 975311100000000000000 000 000011 124577899 59999999999999999997 78999999999855
Q ss_pred CCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCCCCCccccchHHHHHHH
Q 046891 436 NYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFDTLQRIPKMSAYWFKQL 515 (520)
Q Consensus 436 ~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~~K~S~~~y~~i 515 (520)
+.+ ++.++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++|++|+||+|++|||++
T Consensus 382 ~~~-~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy~~i 460 (467)
T TIGR01233 382 EFV-DNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKL 460 (467)
T ss_pred CCC-CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHHHHHH
Confidence 443 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 046891 516 LQRD 519 (520)
Q Consensus 516 i~~~ 519 (520)
|++.
T Consensus 461 i~~~ 464 (467)
T TIGR01233 461 AETQ 464 (467)
T ss_pred HHhc
Confidence 9863
No 7
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-130 Score=1021.18 Aligned_cols=444 Identities=41% Similarity=0.802 Sum_probs=401.8
Q ss_pred CCCCCCceecccccCcccCCCcCCCCCcCeeeeeccc--CCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCc
Q 046891 52 KSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVH--TPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSIS 129 (520)
Q Consensus 52 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~ 129 (520)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .|+++..+.++++||||||||+|||+||||||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 57777788899999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcc
Q 046891 130 WSRIFPQGAG-RVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVK 208 (520)
Q Consensus 130 Wsri~P~~~g-~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~ 208 (520)
||||+|++++ .+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||++||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeccc
Q 046891 209 NWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFVW 288 (520)
Q Consensus 209 ~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~ 288 (520)
+|+||||||+++..||+.|.+||+..+ .+..+||+||+++|||+|++++|+.. ++.+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 999999999999999999999998765 36889999999999999999999965 3449999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcC--CCCCCHHHHhhhcC-CccEEEEecCCc-eeeeC
Q 046891 289 YEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGER--LPKFTPEEVAMVKG-SYDYLGVNQYTS-YYMFD 364 (520)
Q Consensus 289 ~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikg-s~DFlGiNyYt~-~~v~~ 364 (520)
.||.+++|+|+.||+.++.+.+.+|+||+++|+||..+.+.+.+. +|.++++|+++||. ++||||+|||++ .+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999998765 79999999999976 599999999995 44444
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccC
Q 046891 365 PPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLH 444 (520)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~ 444 (520)
.+... .++..+. .....-.|..+.+++|| +|+|+||+.+|+++++||+ +||||||||++..++...++ |+
T Consensus 308 ~~~~~---~~~~~~~----~~~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~-i~ 377 (460)
T COG2723 308 EPRYV---SGYGPGG----FFTSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDG-IN 377 (460)
T ss_pred cCCcC---Ccccccc----cccccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCC-cC
Confidence 32210 1111110 00111134556678999 5999999999999999999 68999999999966555445 99
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCCC-CCccccchHHHHHHHHhhc
Q 046891 445 DTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFDT-LQRIPKMSAYWFKQLLQRD 519 (520)
Q Consensus 445 D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~R~~K~S~~~y~~ii~~~ 519 (520)
|++||+||++||.+|++||+|||+|+||++||++||+||.+||++|||||+||++| ++|+||+|++|||++|++.
T Consensus 378 DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sn 453 (460)
T COG2723 378 DDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESN 453 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988 7999999999999999753
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.7e-128 Score=1037.89 Aligned_cols=444 Identities=31% Similarity=0.528 Sum_probs=391.1
Q ss_pred cCCCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCccc--C----------C--CCCCcCCchhhccHHHHHHH
Q 046891 51 RKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIA--N----------N--ATADVTVDQYHRYKEDIDLM 116 (520)
Q Consensus 51 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~ry~eDi~l~ 116 (520)
..+||++|+||+|||||||||++++||||+|+||+|.+.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45799999999999999999999999999999999988655441 1 1 15789999999999999999
Q ss_pred HHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHH
Q 046891 117 KKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADF 195 (520)
Q Consensus 117 ~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 195 (520)
|+||+++|||||+||||+|+|+ |.+|++||+||++||++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999974 569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEecCcccccccccc-CCC-CCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 046891 196 AEFCFKTFGDRVKNWYTFNEPRVIAALGFD-SGI-NPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQ 273 (520)
Q Consensus 196 a~~~~~~~g~~V~~W~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~ 273 (520)
|++|+++|||+|++|+|||||++++..||. .|. +|||... .++.++++||+++|||+|+++||+.
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~-- 229 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEV-- 229 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999888886 454 3676422 2568999999999999999999985
Q ss_pred ccCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhc--CCCCCCHHHHhhhc-CCcc
Q 046891 274 QAQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGE--RLPKFTPEEVAMVK-GSYD 350 (520)
Q Consensus 274 ~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~--~lp~ft~ed~~~ik-gs~D 350 (520)
.|+++||++++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++.+++ .+|.||++|+++|+ +++|
T Consensus 230 -~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~D 307 (478)
T PRK09593 230 -DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVD 307 (478)
T ss_pred -CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 37899999999999999999999999999987 4578999999999999999999975 46889999999996 8999
Q ss_pred EEEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCC
Q 046891 351 YLGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENG 430 (520)
Q Consensus 351 FlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG 430 (520)
|||||||++.+|+..+.... ... . .. ..... .|..+.+++|| +|+|+||+++|++++++|++ ||||||||
T Consensus 308 FlGiNyYt~~~v~~~~~~~~---~~~-~-~~-~~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG 377 (478)
T PRK09593 308 FISFSYYSSRVASGDPKVNE---KTA-G-NI-FASLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQK-PMFIVENG 377 (478)
T ss_pred EEEEecccCcccccCCCCCC---CCC-C-Cc-ccccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCC-CEEEEcCC
Confidence 99999999999975321100 000 0 00 00001 13345677999 59999999999999999997 69999999
Q ss_pred CCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHH-cCCCEEEEeeccCccccccCCC-CcCccceEEecCC-----CCCc
Q 046891 431 MDNPSNYTLTHLLHDTTRINYYRDYISQLKKAID-DGANVTGYFAWSLLDNFEWLLG-YTARFGITYVDFD-----TLQR 503 (520)
Q Consensus 431 ~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~~R 503 (520)
++..++.+.+++++|++||+||++||++|++||+ |||||+|||+|||+|||||.+| |++|||||+||++ |++|
T Consensus 378 ~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R 457 (478)
T PRK09593 378 LGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKR 457 (478)
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccce
Confidence 9986656667899999999999999999999995 9999999999999999999999 9999999999996 5799
Q ss_pred cccchHHHHHHHHhhc
Q 046891 504 IPKMSAYWFKQLLQRD 519 (520)
Q Consensus 504 ~~K~S~~~y~~ii~~~ 519 (520)
+||+|++||+++|++.
T Consensus 458 ~pK~S~~wy~~ii~~~ 473 (478)
T PRK09593 458 SKKKSFDWYKKVIASN 473 (478)
T ss_pred ecccHHHHHHHHHHhC
Confidence 9999999999999753
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.1e-129 Score=1047.34 Aligned_cols=447 Identities=53% Similarity=0.977 Sum_probs=389.6
Q ss_pred cCCCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCcc
Q 046891 51 RKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISW 130 (520)
Q Consensus 51 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~W 130 (520)
+.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 46899999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcce
Q 046891 131 SRIFPQG-AGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVKN 209 (520)
Q Consensus 131 sri~P~~-~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~ 209 (520)
+||+|+| .|.+|++|++||+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 69999999999999999999999999999999999999999 699999999999999999999999999999
Q ss_pred EEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeecccc
Q 046891 210 WYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFVWY 289 (520)
Q Consensus 210 W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~ 289 (520)
|+|||||++++..||+.|.+|||..+ .++.++++||+++|||+|+++||+++ ++++||++++..++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~ 226 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPF 226 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccccc
Confidence 99999999999999999999999654 36889999999999999999999976 79999999999999
Q ss_pred ccCCCCHHHH-HHHHHHHHHhhccccccccccccChhhhhhhhcC--CCCCCHHHHhhhcCCccEEEEecCCceeeeCCC
Q 046891 290 EPHSRSKADN-YAAQRARDFHIGWFLHPLTYGEYPRTMQENVGER--LPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPP 366 (520)
Q Consensus 290 ~P~~~~~~D~-~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~ 366 (520)
+|.+++++|. +||++.+++.++||+||+++|+||..|+++++++ +|.||++|++.|++++||||||||++.+|+..+
T Consensus 227 ~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 227 YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 9999988776 8999999999999999999999999999999987 999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccCch
Q 046891 367 WPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLHDT 446 (520)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~ 446 (520)
..... ...... .... ....+.++.+++|| +++|+||+++|++++++|++|||+|||||++..++.+. +.++|+
T Consensus 307 ~~~~~-~~~~~~--~~~~--~~~~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~-~~v~D~ 379 (455)
T PF00232_consen 307 NPSSP-PSYDSD--APFG--QPYNPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDD-GKVDDD 379 (455)
T ss_dssp SSTSS-TTHEEE--ESEE--EECETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTT-SHBSHH
T ss_pred ccccc-ccccCC--cccc--ccccccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccc-cCcCcH
Confidence 32110 011000 0000 00023456788999 59999999999999999999999999999998554434 899999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEec-CCCCCccccchHHHHHHHHhhc
Q 046891 447 TRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVD-FDTLQRIPKMSAYWFKQLLQRD 519 (520)
Q Consensus 447 ~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD-~~~~~R~~K~S~~~y~~ii~~~ 519 (520)
.||+||++||++|++||+|||||+||++|||+|||||.+||++||||++|| ++|++|+||+|++||+++|++.
T Consensus 380 ~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~n 453 (455)
T PF00232_consen 380 YRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSN 453 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999874
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=6.8e-128 Score=1032.76 Aligned_cols=442 Identities=33% Similarity=0.564 Sum_probs=386.1
Q ss_pred CCCCCceecccccCcccCCCcCCCCCcCeeeeecc---c-CCCccc----CCC--CCCcCCchhhccHHHHHHHHHcCCC
Q 046891 53 SFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYV---H-TPGNIA----NNA--TADVTVDQYHRYKEDIDLMKKLNFD 122 (520)
Q Consensus 53 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~ry~eDi~l~~~lG~~ 122 (520)
+||++|+||+|||||||||++++||||+|+||.|. + .|+++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 245443 222 5789999999999999999999999
Q ss_pred eeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHH
Q 046891 123 AYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFK 201 (520)
Q Consensus 123 ~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 201 (520)
+|||||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEEecCccccccc-----ccc-CCC-CCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 046891 202 TFGDRVKNWYTFNEPRVIAAL-----GFD-SGI-NPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQ 274 (520)
Q Consensus 202 ~~g~~V~~W~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~ 274 (520)
+|||+|++|+|||||++++.. ||. .|. +|||... .+..++++||+++|||+|++++|+..
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998766 444 343 3565321 24579999999999999999999864
Q ss_pred cCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcC--CCCCCHHHHhhh-cCCccE
Q 046891 275 AQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGER--LPKFTPEEVAMV-KGSYDY 351 (520)
Q Consensus 275 ~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~i-kgs~DF 351 (520)
++++||++++..+++|.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 689999999999999999999999999998854 579999999999999999999763 478999999988 689999
Q ss_pred EEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCC
Q 046891 352 LGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGM 431 (520)
Q Consensus 352 lGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~ 431 (520)
||||||++.+|+.....+. ..+..+ ... .. .|..+.+++|| +|+|+||+.+|++++++|++ ||||||||+
T Consensus 308 lGiNyYts~~v~~~~~~~~--~~~~~~--~~~--~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItENG~ 377 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNPQ--LDYVET--RDL--VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVENGF 377 (476)
T ss_pred EEEecccCcccccCCCCCC--CCcccc--ccc--cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeCCc
Confidence 9999999999975321100 000000 000 01 13335677899 69999999999999999987 599999999
Q ss_pred CCCCCCCcCcccCchhHHHHHHHHHHHHHHHH-HcCCCEEEEeeccCccccccCCC-CcCccceEEecCC-----CCCcc
Q 046891 432 DNPSNYTLTHLLHDTTRINYYRDYISQLKKAI-DDGANVTGYFAWSLLDNFEWLLG-YTARFGITYVDFD-----TLQRI 504 (520)
Q Consensus 432 ~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai-~dGv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~~R~ 504 (520)
+..++.+.+++++|++||+||++||++|++|| +|||||+|||+|||+|||||.+| |++||||||||++ |++|+
T Consensus 378 ~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~ 457 (476)
T PRK09589 378 GAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERS 457 (476)
T ss_pred ccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccc
Confidence 98666666788999999999999999999999 89999999999999999999999 9999999999996 56999
Q ss_pred ccchHHHHHHHHhhc
Q 046891 505 PKMSAYWFKQLLQRD 519 (520)
Q Consensus 505 ~K~S~~~y~~ii~~~ 519 (520)
||+|++|||++|++.
T Consensus 458 pK~S~~wy~~~i~~n 472 (476)
T PRK09589 458 RKKSFYWYRDVIANN 472 (476)
T ss_pred cccHHHHHHHHHHhc
Confidence 999999999999764
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.9e-127 Score=1027.15 Aligned_cols=445 Identities=32% Similarity=0.554 Sum_probs=388.9
Q ss_pred cccCCCCCCceecccccCcccCCCcCCCCCcCeeeeecc---c-CCCccc----CC--CCCCcCCchhhccHHHHHHHHH
Q 046891 49 LTRKSFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYV---H-TPGNIA----NN--ATADVTVDQYHRYKEDIDLMKK 118 (520)
Q Consensus 49 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~ry~eDi~l~~~ 118 (520)
|++.+||++|+||+|||||||||++++||||+|+||.|+ + .|+++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 466789999999999999999999999999999999998 4 345442 22 2678999999999999999999
Q ss_pred cCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHH
Q 046891 119 LNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAE 197 (520)
Q Consensus 119 lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 197 (520)
||+++|||||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999975 66899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEecCcccc-----ccccccC-CCC-CCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 046891 198 FCFKTFGDRVKNWYTFNEPRVI-----AALGFDS-GIN-PPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRE 270 (520)
Q Consensus 198 ~~~~~~g~~V~~W~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~ 270 (520)
+||++|||+|++|+|||||+++ +..||.. |.+ ||+.. ..++.++++||+++|||+|++++|+
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6778874 665 45421 1246899999999999999999998
Q ss_pred HhhccCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCC--CCCCHHHHhhh-cC
Q 046891 271 NYQQAQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERL--PKFTPEEVAMV-KG 347 (520)
Q Consensus 271 ~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~l--p~ft~ed~~~i-kg 347 (520)
.. ++++||+++++.+++|.+++|+|++||++++. +..||+||+++|+||+.|++.++++. |.++++|+++| ++
T Consensus 230 ~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~ 305 (477)
T PRK15014 230 IN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG 305 (477)
T ss_pred hC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 65 68999999999999999999999999998773 22359999999999999999998764 78999999988 58
Q ss_pred CccEEEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEe
Q 046891 348 SYDYLGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLS 427 (520)
Q Consensus 348 s~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~IT 427 (520)
++||||||||+|.+|+.........+.+. . ..+ .|..+.+++|| +|+|+||+.+|++++++|++ |||||
T Consensus 306 ~~DFlGiNyYt~~~v~~~~~~~~~~~~~~-----~--~~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~It 374 (477)
T PRK15014 306 TCDYLGFSYYMTNAVKAEGGTGDAISGFE-----G--SVP--NPYVKASDWGW-QIDPVGLRYALCELYERYQK-PLFIV 374 (477)
T ss_pred CCCEEEEcceeCeeeccCCCCCCCccccc-----c--ccC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEe
Confidence 99999999999999975321100000000 0 001 13334567899 59999999999999999997 59999
Q ss_pred cCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHH-cCCCEEEEeeccCccccccCCC-CcCccceEEecCC-----C
Q 046891 428 ENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAID-DGANVTGYFAWSLLDNFEWLLG-YTARFGITYVDFD-----T 500 (520)
Q Consensus 428 ENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~ 500 (520)
|||++..++.+.+++++|++||+||++||++|++||+ |||||+|||+|||||||||.+| |++||||||||++ +
T Consensus 375 ENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~ 454 (477)
T PRK15014 375 ENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGD 454 (477)
T ss_pred CCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcc
Confidence 9999986666678899999999999999999999995 9999999999999999999999 9999999999995 4
Q ss_pred CCccccchHHHHHHHHhhc
Q 046891 501 LQRIPKMSAYWFKQLLQRD 519 (520)
Q Consensus 501 ~~R~~K~S~~~y~~ii~~~ 519 (520)
++|+||+|++|||++|++.
T Consensus 455 ~~R~pK~S~~wy~~ii~~n 473 (477)
T PRK15014 455 MSRSRKKSFNWYKEVIASN 473 (477)
T ss_pred cceecccHHHHHHHHHHhc
Confidence 7999999999999999763
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=2e-126 Score=1018.96 Aligned_cols=442 Identities=31% Similarity=0.528 Sum_probs=392.8
Q ss_pred CCCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCccc------------CCC--CCCcCCchhhccHHHHHHHHH
Q 046891 53 SFPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIA------------NNA--TADVTVDQYHRYKEDIDLMKK 118 (520)
Q Consensus 53 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~ry~eDi~l~~~ 118 (520)
+||++|+||+|||||||||++++||||+|+||.|++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998666542 221 678999999999999999999
Q ss_pred cCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHH
Q 046891 119 LNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAE 197 (520)
Q Consensus 119 lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 197 (520)
||+++|||||+||||+|+|+ +.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEecCcccccccccc-CCC-CCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046891 198 FCFKTFGDRVKNWYTFNEPRVIAALGFD-SGI-NPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQA 275 (520)
Q Consensus 198 ~~~~~~g~~V~~W~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~ 275 (520)
+|+++|||+|++|+||||||+++..||. .|. +|||... .+..++++||+++|||+|++++|+..
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 664 5887532 24589999999999999999999864
Q ss_pred CCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcC--CCCCCHHHHhhhcCCccEEE
Q 046891 276 QKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGER--LPKFTPEEVAMVKGSYDYLG 353 (520)
Q Consensus 276 ~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikgs~DFlG 353 (520)
++++||++++..+++|.+++|+|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999998877 55789999999999999999999764 79999999999999999999
Q ss_pred EecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCC
Q 046891 354 VNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDN 433 (520)
Q Consensus 354 iNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~ 433 (520)
||||++.+|+....... .. ....... .. .|..+.+++|| +|+|+||+++|+++++||++ ||||||||++.
T Consensus 308 iNyYt~~~v~~~~~~~~--~~--~~~~~~~--~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~ 377 (474)
T PRK09852 308 FSYYASRCASAEMNANN--SS--AANVVKS--LR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQK-PLFLVENGLGA 377 (474)
T ss_pred EccccCeecccCCCCCC--CC--cCCceec--cc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCC-CEEEeCCCCCC
Confidence 99999999975321000 00 0000000 01 24445678999 69999999999999999997 59999999998
Q ss_pred CCCCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCC-CcCccceEEecCC-----CCCccccc
Q 046891 434 PSNYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLG-YTARFGITYVDFD-----TLQRIPKM 507 (520)
Q Consensus 434 ~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~~R~~K~ 507 (520)
.++.+.++.++|++||+||++||++|++||+|||||+|||+|||||||||.+| |++|||||+||++ |++|+||+
T Consensus 378 ~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~ 457 (474)
T PRK09852 378 KDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKK 457 (474)
T ss_pred CCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceeccc
Confidence 66566678899999999999999999999999999999999999999999999 9999999999996 57999999
Q ss_pred hHHHHHHHHhhc
Q 046891 508 SAYWFKQLLQRD 519 (520)
Q Consensus 508 S~~~y~~ii~~~ 519 (520)
|++|||++|++.
T Consensus 458 S~~wy~~ii~~n 469 (474)
T PRK09852 458 SFWWYKKVIASN 469 (474)
T ss_pred HHHHHHHHHHhC
Confidence 999999999764
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=5.2e-124 Score=993.46 Aligned_cols=427 Identities=44% Similarity=0.827 Sum_probs=393.7
Q ss_pred CCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCccccc
Q 046891 54 FPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRI 133 (520)
Q Consensus 54 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri 133 (520)
||++|+||+|||||||||+++++|||+|+||.+.+.++++.++.++++||||||||+|||++|++||+++|||||+||||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777776667889999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEEe
Q 046891 134 FPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVKNWYTF 213 (520)
Q Consensus 134 ~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~ 213 (520)
+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||++|++|+||
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997689999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred cCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeccccccCC
Q 046891 214 NEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDFVWYEPHS 293 (520)
Q Consensus 214 NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~ 293 (520)
|||++++..||..|.+||+.++ .++.++++||+++|||+|+++||++. |+++||++++..+++|.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~-----------~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD-----------LRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCC
Confidence 9999999999999999998543 14579999999999999999999965 689999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeCCCCCCCCCC
Q 046891 294 RSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPPWPQSNIS 373 (520)
Q Consensus 294 ~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~ 373 (520)
++|+|+.||++++++.++||+||++.|+||+.|++.++ .+|.||++|++++++++||||||||++.+|+...... .
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~ 301 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---A 301 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---C
Confidence 99999999999999999999999999999999999997 4799999999999999999999999999997632110 0
Q ss_pred CCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccCchhHHHHHH
Q 046891 374 SYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLHDTTRINYYR 453 (520)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~ 453 (520)
.. . .. .+..+.+++|| +|+|+||+.+|+++++||++|||||||||++..++.+ +++++|++||+||+
T Consensus 302 ~~-----~----~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~-~g~~~D~~Ri~yl~ 368 (427)
T TIGR03356 302 GF-----V----EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVT-DGEVHDPERIAYLR 368 (427)
T ss_pred Cc-----c----cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCc-CCCcCCHHHHHHHH
Confidence 00 0 00 12224567899 6999999999999999999888999999999865554 78899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCCCCCccccchHHHH
Q 046891 454 DYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFDTLQRIPKMSAYWF 512 (520)
Q Consensus 454 ~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~~K~S~~~y 512 (520)
+||++|++||+|||||+||++|||+|||||.+||++|||||+||++|++|+||+|++||
T Consensus 369 ~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~wy 427 (427)
T TIGR03356 369 DHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.60 E-value=2.5e-13 Score=135.81 Aligned_cols=250 Identities=15% Similarity=0.216 Sum_probs=159.8
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHHHHHcCCee--EEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 046891 128 ISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITP--YANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGD 205 (520)
Q Consensus 128 i~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~ 205 (520)
+.|++++|++ |.+|+ +..+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~~-G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPSR-GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCCC-CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhCC
Confidence 3699999999 99999 55678999999999994 5567888999999743 2 567889999999999999999
Q ss_pred CcceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHhhccCCCeEEEEe
Q 046891 206 RVKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAA-HNMILSHASAVQRYRENYQQAQKGKIGILL 284 (520)
Q Consensus 206 ~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~-h~~llAHa~a~~~~r~~~~~~~~g~IGi~~ 284 (520)
+|..|.++|||......|+....| +.+. ... -..|.++.|+.. |+.++-+
T Consensus 73 ~i~~wdV~NE~~~~~~~~~~~~~w---------------------~~~~G~~~---i~~af~~ar~~~---P~a~l~~-- 123 (254)
T smart00633 73 KIYAWDVVNEALHDNGSGLRRSVW---------------------YQILGEDY---IEKAFRYAREAD---PDAKLFY-- 123 (254)
T ss_pred cceEEEEeeecccCCCcccccchH---------------------HHhcChHH---HHHHHHHHHHhC---CCCEEEE--
Confidence 999999999998431111110011 1111 111 124556666643 5655533
Q ss_pred eccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeC
Q 046891 285 DFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFD 364 (520)
Q Consensus 285 ~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~ 364 (520)
|-.... +.. .. ......+. + ++..-..++|-||++... ...
T Consensus 124 Ndy~~~--~~~-~k---~~~~~~~v------------------~------------~l~~~g~~iDgiGlQ~H~---~~~ 164 (254)
T smart00633 124 NDYNTE--EPN-AK---RQAIYELV------------------K------------KLKAKGVPIDGIGLQSHL---SLG 164 (254)
T ss_pred eccCCc--Ccc-HH---HHHHHHHH------------------H------------HHHHCCCccceeeeeeee---cCC
Confidence 311111 010 00 11111110 0 111112347999995221 000
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccC
Q 046891 365 PPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLH 444 (520)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~ 444 (520)
...|..|...|..+.+. + .||+|||.++...+ .
T Consensus 165 -------------------------------------~~~~~~~~~~l~~~~~~-g-~pi~iTE~dv~~~~--------~ 197 (254)
T smart00633 165 -------------------------------------SPNIAEIRAALDRFASL-G-LEIQITELDISGYP--------N 197 (254)
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHc-C-CceEEEEeecCCCC--------c
Confidence 01245689999998765 5 47999999998742 1
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccceEEecCCCCCccccchHHH
Q 046891 445 DTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGITYVDFDTLQRIPKMSAYW 511 (520)
Q Consensus 445 D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~~K~S~~~ 511 (520)
...+.+++++.+..+.+- -.|.|.++|.+.|..+|..+ .+.||+.=| -.||+++++
T Consensus 198 ~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~-----~~~kpa~~~ 253 (254)
T smart00633 198 PQAQAADYEEVFKACLAH----PAVTGVTVWGVTDKYSWLDG--GAPLLFDAN-----YQPKPAYWA 253 (254)
T ss_pred HHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCCcccCC--CCceeECCC-----CCCChhhhc
Confidence 156677777776665542 38899999999999999765 567887433 468888765
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.34 E-value=2.3e-12 Score=135.79 Aligned_cols=109 Identities=26% Similarity=0.458 Sum_probs=89.8
Q ss_pred hccHHHHHHHHHcCCCeeec-CCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhh-----
Q 046891 107 HRYKEDIDLMKKLNFDAYRF-SISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERY----- 180 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rf-si~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~----- 180 (520)
+.+++|+++|+++|+|++|+ .++|+++||++ |++|+ .++|++|+.+.++||++++.+.+...|.||.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999996 67999999999 99999 6688999999999999999999999999998653
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhCC--CcceEEEecCcccc
Q 046891 181 ----------GG-----LLGRQVVKDYADFAEFCFKTFGD--RVKNWYTFNEPRVI 219 (520)
Q Consensus 181 ----------gg-----w~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~~ 219 (520)
|+ ..+|..++.+.++++.++++|++ .|..|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 21 34577889999999999999998 48999999999743
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.18 E-value=4.6e-09 Score=108.26 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=141.7
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecC---CCCcHHHHHhhCCCCC-
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYH---YDMPLALHERYGGLLG- 185 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~ggw~~- 185 (520)
++=+++||+.|+|++|+-+ | +.|...|.-|. +.-.++....+++||+.++++|- |.=|.--..+ ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCCC
Confidence 4457999999999999966 3 23332255555 67789999999999999999984 3344222222 57888
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---CcceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHH
Q 046891 186 --RQVVKDYADFAEFCFKTFGD---RVKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILS 260 (520)
Q Consensus 186 --~~~~~~f~~ya~~~~~~~g~---~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llA 260 (520)
.+..+...+|.+.+.+.+.+ .++++++=||.+.- .+ ||.|.. .-+.-.-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~G----ml---wp~g~~--------------~~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNG----ML---WPDGKP--------------SNWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGE----ST---BTTTCT--------------T-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccc----cc---CcCCCc--------------cCHHHHHHHHHH
Confidence 67788889999999888854 68999999998732 11 454432 123334456655
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHH
Q 046891 261 HASAVQRYRENYQQAQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPE 340 (520)
Q Consensus 261 Ha~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~e 340 (520)
-.+|++ +. .++.+|-+.+... .|... ..||.+-+..
T Consensus 159 g~~AVr---~~---~p~~kV~lH~~~~---------~~~~~--------~~~~f~~l~~--------------------- 194 (332)
T PF07745_consen 159 GIKAVR---EV---DPNIKVMLHLANG---------GDNDL--------YRWFFDNLKA--------------------- 194 (332)
T ss_dssp HHHHHH---TH---SSTSEEEEEES-T---------TSHHH--------HHHHHHHHHH---------------------
T ss_pred HHHHHH---hc---CCCCcEEEEECCC---------CchHH--------HHHHHHHHHh---------------------
Confidence 555554 43 3677886665432 11111 1233332211
Q ss_pred HHhhhcCCccEEEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcC
Q 046891 341 EVAMVKGSYDYLGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYG 420 (520)
Q Consensus 341 d~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~ 420 (520)
.....|.||++||.- |. .....|...|+.+.+||+
T Consensus 195 ----~g~d~DviGlSyYP~----------------------------------------w~-~~l~~l~~~l~~l~~ry~ 229 (332)
T PF07745_consen 195 ----AGVDFDVIGLSYYPF----------------------------------------WH-GTLEDLKNNLNDLASRYG 229 (332)
T ss_dssp ----TTGG-SEEEEEE-ST----------------------------------------TS-T-HHHHHHHHHHHHHHHT
T ss_pred ----cCCCcceEEEecCCC----------------------------------------Cc-chHHHHHHHHHHHHHHhC
Confidence 123469999999931 11 134579999999999998
Q ss_pred CCcEEEecCCCCCC-CCCCcCcccCch--------hHHHHHHHHHHHHHHHHHc--CCCEEEEeeccCccc
Q 046891 421 NPTVMLSENGMDNP-SNYTLTHLLHDT--------TRINYYRDYISQLKKAIDD--GANVTGYFAWSLLDN 480 (520)
Q Consensus 421 ~ppI~ITENG~~~~-~~~~~~~~i~D~--------~Ri~yl~~hl~~~~~Ai~d--Gv~V~GY~~WSl~Dn 480 (520)
+ ||+|+|.|++.. ++.+..+.+... .-++=-++.|..+.+++.+ +-...|.|+|----.
T Consensus 230 K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 230 K-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp --EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred C-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccc
Confidence 6 799999999872 111111111110 0122223445556666644 689999999965443
No 17
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.11 E-value=1e-08 Score=114.82 Aligned_cols=262 Identities=18% Similarity=0.191 Sum_probs=154.0
Q ss_pred hccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHh-------
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHER------- 179 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~------- 179 (520)
..+..|+++||++|+|++|+|- .|.. ..+++.|-+.||=++.-+.-+....|+...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC------------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 4578999999999999999962 2332 267889999999877655443333332100
Q ss_pred hCCCC----ChhhHHHHHHHHHHHHHHhCCC--cceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHH
Q 046891 180 YGGLL----GRQVVKDYADFAEFCFKTFGDR--VKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTA 253 (520)
Q Consensus 180 ~ggw~----~~~~~~~f~~ya~~~~~~~g~~--V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~ 253 (520)
...|. +++..+.+.+-++.+++++.+. |-.|.+-||+... . + ....
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~---------~-~------------------~~~~ 427 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR---------E-Q------------------GARE 427 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc---------c-h------------------hHHH
Confidence 01222 3577888999999999999885 8899999996310 0 0 0011
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcC
Q 046891 254 AHNMILSHASAVQRYRENYQQAQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGER 333 (520)
Q Consensus 254 ~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~ 333 (520)
.+.+.++++|+.. +...|..+.+... .| .
T Consensus 428 ------~~~~l~~~~k~~D---ptR~vt~~~~~~~-~~--------------------------------~--------- 456 (604)
T PRK10150 428 ------YFAPLAELTRKLD---PTRPVTCVNVMFA-TP--------------------------------D--------- 456 (604)
T ss_pred ------HHHHHHHHHHhhC---CCCceEEEecccC-Cc--------------------------------c---------
Confidence 1223345556643 3344443322100 00 0
Q ss_pred CCCCCHHHHhhhcCCccEEEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHH
Q 046891 334 LPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALM 413 (520)
Q Consensus 334 lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~ 413 (520)
...+...+|++|+|.|...+...... . .+ -..+..-+.
T Consensus 457 --------~~~~~~~~Dv~~~N~Y~~wy~~~~~~----------------------------~-----~~-~~~~~~~~~ 494 (604)
T PRK10150 457 --------TDTVSDLVDVLCLNRYYGWYVDSGDL----------------------------E-----TA-EKVLEKELL 494 (604)
T ss_pred --------cccccCcccEEEEcccceecCCCCCH----------------------------H-----HH-HHHHHHHHH
Confidence 00012235999999986533211000 0 00 012344455
Q ss_pred HHHHHcCCCcEEEecCCCCCCCCCCc--CcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCC----
Q 046891 414 YVKERYGNPTVMLSENGMDNPSNYTL--THLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGY---- 487 (520)
Q Consensus 414 ~~~~rY~~ppI~ITENG~~~~~~~~~--~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy---- 487 (520)
...+.|+ .|++|||.|.+....... +..-..++...|++.|+.. +++--.|.|-|+|.++|-. +..|.
T Consensus 495 ~~~~~~~-kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~----~~~~p~~~G~~iW~~~D~~-~~~g~~~~~ 568 (604)
T PRK10150 495 AWQEKLH-KPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRV----FDRVPAVVGEQVWNFADFA-TSQGILRVG 568 (604)
T ss_pred HHHHhcC-CCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHH----HhcCCceEEEEEEeeeccC-CCCCCcccC
Confidence 5556664 579999999765211111 1122355666777766664 4444689999999999932 22221
Q ss_pred cCccceEEecCCCCCccccchHHHHHHHHh
Q 046891 488 TARFGITYVDFDTLQRIPKMSAYWFKQLLQ 517 (520)
Q Consensus 488 ~~RfGL~~VD~~~~~R~~K~S~~~y~~ii~ 517 (520)
....||+.-| |.||++++.||+..+
T Consensus 569 g~~~Gl~~~d-----r~~k~~~~~~k~~~~ 593 (604)
T PRK10150 569 GNKKGIFTRD-----RQPKSAAFLLKKRWT 593 (604)
T ss_pred CCcceeEcCC-----CCChHHHHHHHHHhh
Confidence 1367887544 999999999999865
No 18
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.08 E-value=2.8e-10 Score=113.99 Aligned_cols=109 Identities=22% Similarity=0.290 Sum_probs=90.8
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccccc-cCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCC-CC
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSRIF-PQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGL-LG 185 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw-~~ 185 (520)
-.++|++.|+++|+|++|+-|.|..++ |.+.+.++...++.++++|+.+.++||.++++|++. |.|.... ++. ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 469999999999999999999998888 566456999999999999999999999999999986 6664332 233 33
Q ss_pred hhhHHHHHHHHHHHHHHhCC--CcceEEEecCcccc
Q 046891 186 RQVVKDYADFAEFCFKTFGD--RVKNWYTFNEPRVI 219 (520)
Q Consensus 186 ~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~~~ 219 (520)
....+.|.++.+.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 45678899999999999944 68899999999854
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.06 E-value=3.9e-08 Score=101.69 Aligned_cols=304 Identities=21% Similarity=0.270 Sum_probs=177.1
Q ss_pred CCCCceecccccCcccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCccccc
Q 046891 54 FPDGFVFGTATSAYQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRI 133 (520)
Q Consensus 54 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri 133 (520)
.+.+|.+|+|.++.++++.. .|++- +.+.-+.-+..-.+.|..+
T Consensus 6 ~~~~f~~G~av~~~~~~~~~----------------------------------~~~~~--~~~~Fn~~t~eN~~Kw~~~ 49 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP----------------------------------RYREL--FAKHFNSVTPENEMKWGSI 49 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH----------------------------------HHHHH--HHHH-SEEEESSTTSHHHH
T ss_pred HhccCCEEEEechhHcCCcH----------------------------------HHHHH--HHHhCCeeeeccccchhhh
Confidence 45678999999988888731 01111 1233333444456899999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHcCCeeE--EEecCCCCcHHHHHhhCCCCChh---hHHHHHHHHHHHHHHhCC--C
Q 046891 134 FPQGAGRVNWKGVAYYNRLIDYMLEQGITPY--ANLYHYDMPLALHERYGGLLGRQ---VVKDYADFAEFCFKTFGD--R 206 (520)
Q Consensus 134 ~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~--vtL~H~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~g~--~ 206 (520)
+|.+ |.+|++ -.+++++-++++||++- ..+.|--.|.|+... ..+...+ ..+...+|.+.++.||++ +
T Consensus 50 e~~~-g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~ 124 (320)
T PF00331_consen 50 EPEP-GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGR 124 (320)
T ss_dssp ESBT-TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred cCCC-CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccc
Confidence 9999 999994 57799999999999987 355577899999863 2233333 788999999999999995 8
Q ss_pred cceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEeec
Q 046891 207 VKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGILLDF 286 (520)
Q Consensus 207 V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~~~~ 286 (520)
|..|=++|||..... .+-+.. ....++++=. ---..|.+.-|+.. |+.+.=+ |-
T Consensus 125 i~~WDVvNE~i~~~~-------~~~~~r------------~~~~~~~lG~--~yi~~aF~~A~~~~---P~a~L~~--ND 178 (320)
T PF00331_consen 125 IYAWDVVNEAIDDDG-------NPGGLR------------DSPWYDALGP--DYIADAFRAAREAD---PNAKLFY--ND 178 (320)
T ss_dssp ESEEEEEES-B-TTS-------SSSSBC------------TSHHHHHHTT--CHHHHHHHHHHHHH---TTSEEEE--EE
T ss_pred eEEEEEeeecccCCC-------cccccc------------CChhhhcccH--hHHHHHHHHHHHhC---CCcEEEe--cc
Confidence 999999999863211 001111 1122222110 00123444445543 4555443 22
Q ss_pred cccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcC-CccEEEEecCCceeeeCC
Q 046891 287 VWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKG-SYDYLGVNQYTSYYMFDP 365 (520)
Q Consensus 287 ~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg-s~DFlGiNyYt~~~v~~~ 365 (520)
...+. . +++ ..+. .|.+.+ .. +| ++|=||++-.- ..
T Consensus 179 y~~~~--~-------~k~-~~~~---------------~lv~~l------------~~-~gvpIdgIG~Q~H~----~~- 215 (320)
T PF00331_consen 179 YNIES--P-------AKR-DAYL---------------NLVKDL------------KA-RGVPIDGIGLQSHF----DA- 215 (320)
T ss_dssp SSTTS--T-------HHH-HHHH---------------HHHHHH------------HH-TTHCS-EEEEEEEE----ET-
T ss_pred ccccc--h-------HHH-HHHH---------------HHHHHH------------Hh-CCCccceechhhcc----CC-
Confidence 11111 0 111 0010 011111 10 22 47889886431 00
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccCc
Q 046891 366 PWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLHD 445 (520)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~D 445 (520)
...|..+...|+++.+ .+ .||.|||.-+...+.... .-.+
T Consensus 216 ------------------------------------~~~~~~i~~~l~~~~~-~G-l~i~ITElDv~~~~~~~~--~~~~ 255 (320)
T PF00331_consen 216 ------------------------------------GYPPEQIWNALDRFAS-LG-LPIHITELDVRDDDNPPD--AEEE 255 (320)
T ss_dssp ------------------------------------TSSHHHHHHHHHHHHT-TT-SEEEEEEEEEESSSTTSC--HHHH
T ss_pred ------------------------------------CCCHHHHHHHHHHHHH-cC-CceEEEeeeecCCCCCcc--hHHH
Confidence 0016789999999854 46 589999998887421100 1235
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcC-ccceEEecCCCCCccccchHHHHHH
Q 046891 446 TTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTA-RFGITYVDFDTLQRIPKMSAYWFKQ 514 (520)
Q Consensus 446 ~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~-RfGL~~VD~~~~~R~~K~S~~~y~~ 514 (520)
..+.+++++.+..+.+.-.. .|.|.+.|.+.|..+|-..... +=+|+.=| -.|||+++.+.+
T Consensus 256 ~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-----~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 256 EAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFDED-----YQPKPAYDAIVD 318 (320)
T ss_dssp HHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-TT-----SBB-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeECCC-----cCCCHHHHHHHh
Confidence 56777777777666554222 8999999999999999766333 33555333 578999887765
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.98 E-value=8.5e-09 Score=112.48 Aligned_cols=291 Identities=21% Similarity=0.341 Sum_probs=138.9
Q ss_pred ccHHHHHHHH-HcCCCeeecC--C--ccccccc-CCCCC--CChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHh
Q 046891 108 RYKEDIDLMK-KLNFDAYRFS--I--SWSRIFP-QGAGR--VNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHER 179 (520)
Q Consensus 108 ry~eDi~l~~-~lG~~~~Rfs--i--~Wsri~P-~~~g~--~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 179 (520)
.+++.+..++ ++|++.+||- + +..-..+ ++.|. +|+ ...|+++|.|+++||+|+|.|-. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 4677777765 9999999975 2 2222222 22232 798 77889999999999999999987 67665421
Q ss_pred ------hCCCCC-hhhHHHHHHHHH----HHHHHhCC-Ccc--eEEEecCccccccccccCCCCCCCCCCcccCCCCCCC
Q 046891 180 ------YGGLLG-RQVVKDYADFAE----FCFKTFGD-RVK--NWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGD 245 (520)
Q Consensus 180 ------~ggw~~-~~~~~~f~~ya~----~~~~~~g~-~V~--~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~ 245 (520)
+.|+.+ |+..+.+.++++ .+.+|||. .|. +|.+||||++..+ |..|.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~------------ 175 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT------------ 175 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-------------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC------------
Confidence 122222 355566666554 44556663 466 5589999995321 11110
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEE-eeccccccCCCCHHHHHHHHHHHHHhhccccccccccccCh
Q 046891 246 SGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGIL-LDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPR 324 (520)
Q Consensus 246 ~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~-~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~ 324 (520)
.+.|. .+- ..+++++|+.. |..+||-. +.. .. . ... ..|.
T Consensus 176 --~~ey~---~ly---~~~~~~iK~~~---p~~~vGGp~~~~------~~-~---~~~---~~~l--------------- 216 (486)
T PF01229_consen 176 --PEEYF---ELY---DATARAIKAVD---PELKVGGPAFAW------AY-D---EWC---EDFL--------------- 216 (486)
T ss_dssp --HHHHH---HHH---HHHHHHHHHH----TTSEEEEEEEET------T--T---HHH---HHHH---------------
T ss_pred --HHHHH---HHH---HHHHHHHHHhC---CCCcccCccccc------cH-H---HHH---HHHH---------------
Confidence 11121 232 33455566644 68899854 110 00 0 001 1111
Q ss_pred hhhhhhhcCCCCCCHHHHhhhcCCccEEEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccC
Q 046891 325 TMQENVGERLPKFTPEEVAMVKGSYDYLGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIV 404 (520)
Q Consensus 325 ~~~~~l~~~lp~ft~ed~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~ 404 (520)
+++..+ +-++|||.+..|......... +.... ...+. ..+.
T Consensus 217 ---~~~~~~------------~~~~DfiS~H~y~~~~~~~~~-----------~~~~~-----------~~~~~--~~~~ 257 (486)
T PF01229_consen 217 ---EFCKGN------------NCPLDFISFHSYGTDSAEDIN-----------ENMYE-----------RIEDS--RRLF 257 (486)
T ss_dssp ---HHHHHC------------T---SEEEEEEE-BESESE-S-----------S-EEE-----------EB--H--HHHH
T ss_pred ---HHHhcC------------CCCCCEEEEEecccccccccc-----------hhHHh-----------hhhhH--HHHH
Confidence 111110 124699999999754321110 00000 00000 0122
Q ss_pred hHHHHHHHHHHHHH-cCCCcEEEecCCCCCCCCCCcCcccCch-hHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccc
Q 046891 405 PWGLYNALMYVKER-YGNPTVMLSENGMDNPSNYTLTHLLHDT-TRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFE 482 (520)
Q Consensus 405 P~Gl~~~L~~~~~r-Y~~ppI~ITENG~~~~~~~~~~~~i~D~-~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~E 482 (520)
| .+..+...+.+. +++.|+++||-...... ...++|+ ++..|+... +++ .+|..+-++.+|++.|.||
T Consensus 258 ~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~----~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~sD~Fe 327 (486)
T PF01229_consen 258 P-ELKETRPIINDEADPNLPLYITEWNASISP----RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFSDRFE 327 (486)
T ss_dssp H-HHHHHHHHHHTSSSTT--EEEEEEES-SST----T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SBS---
T ss_pred H-HHHHHHHHHhhccCCCCceeecccccccCC----CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchhhhhh
Confidence 2 244443333333 45568999996665532 2345554 444444332 222 3566677799999999998
Q ss_pred cCCC----CcCccceEEecCCCCCccccchHHHHHHH
Q 046891 483 WLLG----YTARFGITYVDFDTLQRIPKMSAYWFKQL 515 (520)
Q Consensus 483 W~~G----y~~RfGL~~VD~~~~~R~~K~S~~~y~~i 515 (520)
=..- +-.-|||+..+ .++|||++-|+-+
T Consensus 328 e~~~~~~pf~ggfGLlt~~-----gI~KPa~~A~~~L 359 (486)
T PF01229_consen 328 ENGTPRKPFHGGFGLLTKL-----GIPKPAYYAFQLL 359 (486)
T ss_dssp TTSS-SSSSSS-S-SEECC-----CEE-HHHHHHHHH
T ss_pred ccCCCCCceecchhhhhcc-----CCCchHHHHHHHH
Confidence 4221 55568998876 7999998887643
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=3.4e-06 Score=85.14 Aligned_cols=273 Identities=16% Similarity=0.177 Sum_probs=160.2
Q ss_pred cCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE--EecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 046891 126 FSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYA--NLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTF 203 (520)
Q Consensus 126 fsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 203 (520)
--+-|.-|+|+. |.+|+++ =|.+.+-+++||+.--- -+.|--.|.|+.. -.+..+...+...++...|++||
T Consensus 65 nemKwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 345799999987 9999966 56889999999997433 2347788999963 24788899999999999999999
Q ss_pred CCCcceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 046891 204 GDRVKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYRENYQQAQKGKIGIL 283 (520)
Q Consensus 204 g~~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~g~IGi~ 283 (520)
.+.|..|=+.|||-- ...++-...|.-+.. ..+. +. .|.+.-|+ +.|+++.-+.
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd~------I~----~aF~~Are---adP~AkL~~N 192 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPDY------IK----LAFHIARE---ADPDAKLVIN 192 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccHH------HH----HHHHHHHh---hCCCceEEee
Confidence 999999999999853 211221111111100 1121 22 23333354 3467776543
Q ss_pred eeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCC-ccEEEEecCCceee
Q 046891 284 LDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGS-YDYLGVNQYTSYYM 362 (520)
Q Consensus 284 ~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs-~DFlGiNyYt~~~v 362 (520)
--+ ...+| +.++. +. .|++.|.+ ||. +|=+|++-= .
T Consensus 193 DY~-----ie~~~----~kr~~--~~---------------nlI~~Lke-------------kG~pIDgiG~QsH----~ 229 (345)
T COG3693 193 DYS-----IEGNP----AKRNY--VL---------------NLIEELKE-------------KGAPIDGIGIQSH----F 229 (345)
T ss_pred ccc-----ccCCh----HHHHH--HH---------------HHHHHHHH-------------CCCCccceeeeee----e
Confidence 322 11222 11111 10 01122111 453 788887632 0
Q ss_pred eCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcc
Q 046891 363 FDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHL 442 (520)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~ 442 (520)
+ .+| ..++-.+..+....+. + .||+|||--|.... . ..++
T Consensus 230 ~----------------------------------~~~--~~~~~~~~a~~~~~k~-G-l~i~VTELD~~~~~-P-~~~~ 269 (345)
T COG3693 230 S----------------------------------GDG--PSIEKMRAALLKFSKL-G-LPIYVTELDMSDYT-P-DSGA 269 (345)
T ss_pred c----------------------------------CCC--CCHHHHHHHHHHHhhc-C-CCceEEEeeeeccC-C-CCcc
Confidence 0 111 1122233344444444 5 47999999888742 1 1122
Q ss_pred cCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccCCCCcCccce---EEecCCCCCccccchHHHHHHHHhh
Q 046891 443 LHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWLLGYTARFGI---TYVDFDTLQRIPKMSAYWFKQLLQR 518 (520)
Q Consensus 443 i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL---~~VD~~~~~R~~K~S~~~y~~ii~~ 518 (520)
-.+..+.++.+ .+.-.-......+|.+.+.|.++|+++|..|..+|++= .=+| ..=.||+...+..++...
T Consensus 270 p~~~~~~~~~~--~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D---~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 270 PRLYLQKAASR--AKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFD---DNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred HHHHHHHHHHH--HHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccC---CCCCcchHHHHHHHHhcC
Confidence 22222222221 11122223467779999999999999999998888851 1112 235799999998877653
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=8.9e-08 Score=106.39 Aligned_cols=119 Identities=14% Similarity=0.231 Sum_probs=94.4
Q ss_pred ccHHHHHHHHHcCCCeeecCC-cccccccCCCCCCChhHHHHHHHH-HHHHHHcCCeeEEEe-cCCCCcHHHHHh-----
Q 046891 108 RYKEDIDLMKKLNFDAYRFSI-SWSRIFPQGAGRVNWKGVAYYNRL-IDYMLEQGITPYANL-YHYDMPLALHER----- 179 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g~~n~~gl~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~----- 179 (520)
-|++|++.||++|+|++|.++ +|++++|+. |.+|+. +.|.. |+.+.+.||..++.. .....|.|+..+
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 478999999999999999955 999999999 999996 66777 999999999999999 889999999876
Q ss_pred ----------hCCCCC-----hhhHHHHHHHHHHHHHH-hCC--CcceEEEecCccc-cccccccCCCCC
Q 046891 180 ----------YGGLLG-----RQVVKDYADFAEFCFKT-FGD--RVKNWYTFNEPRV-IAALGFDSGINP 230 (520)
Q Consensus 180 ----------~ggw~~-----~~~~~~f~~ya~~~~~~-~g~--~V~~W~t~NEp~~-~~~~gy~~G~~~ 230 (520)
.|+|.+ +-..+.-.++.+.+.+| ||+ .|..|.+-||-.. .+...|....|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 356644 33333344444458888 877 5999999999776 555555555554
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.13 E-value=2.2e-05 Score=80.30 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=63.3
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhC---
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYG--- 181 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g--- 181 (520)
....++.|+.+||+||+|++|++- .|.. .++++.|-+.||-++.-+.....-.|-. .|
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc------------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 356889999999999999999953 1221 2677889999998877664422111110 01
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCC--CcceEEEecCc
Q 046891 182 -GLLGRQVVKDYADFAEFCFKTFGD--RVKNWYTFNEP 216 (520)
Q Consensus 182 -gw~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp 216 (520)
--.+++..+.+.+-++.+++++.+ -|-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013678888888888999999977 49999999997
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.0067 Score=60.95 Aligned_cols=299 Identities=17% Similarity=0.236 Sum_probs=164.3
Q ss_pred ccCCCCCCceecccccC-cccCCCcCCCCCcCeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCC
Q 046891 50 TRKSFPDGFVFGTATSA-YQVEGMANKDGRGPCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSI 128 (520)
Q Consensus 50 ~~~~fp~~FlwG~atsa-~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi 128 (520)
.....|++|+-|+-.|. .|+|-. ++ .|... ++- -++=++.||+.|+|.+|+-|
T Consensus 31 ~v~~~~~dFikGaDis~l~~lE~~---Gv-------kf~d~--------ng~--------~qD~~~iLK~~GvNyvRlRv 84 (403)
T COG3867 31 PVENSPNDFIKGADISSLIELENS---GV-------KFFDT--------NGV--------RQDALQILKNHGVNYVRLRV 84 (403)
T ss_pred eccCChHHhhccccHHHHHHHHHc---Cc-------eEEcc--------CCh--------HHHHHHHHHHcCcCeEEEEE
Confidence 33568999999986553 566642 01 12111 111 14447999999999999955
Q ss_pred cccccccCC-----C---CCCChhHHHHHHHHHHHHHHcCCeeEEEec---CCCCcHHHHHhhCCCCC---hhhHHHHHH
Q 046891 129 SWSRIFPQG-----A---GRVNWKGVAYYNRLIDYMLEQGITPYANLY---HYDMPLALHERYGGLLG---RQVVKDYAD 194 (520)
Q Consensus 129 ~Wsri~P~~-----~---g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~ggw~~---~~~~~~f~~ 194 (520)
.-++ . |.-|. ++---++-...+.+||++++..| ||.=|.--.. .-.|.+ ++...+.-.
T Consensus 85 -----wndP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~k-PkaW~~l~fe~lk~avy~ 156 (403)
T COG3867 85 -----WNDPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKK-PKAWENLNFEQLKKAVYS 156 (403)
T ss_pred -----ecCCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCC-cHHhhhcCHHHHHHHHHH
Confidence 3222 1 22222 13344566778889999999987 5666643222 245665 233344445
Q ss_pred HHHHHHHHh---CCCcceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 046891 195 FAEFCFKTF---GDRVKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASAVQRYREN 271 (520)
Q Consensus 195 ya~~~~~~~---g~~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~ 271 (520)
|.+.+...+ |-..+.-++=||-| .|++ ||-|... -+.-+-.++.| +++++|+.
T Consensus 157 yTk~~l~~m~~eGi~pdmVQVGNEtn----~gfl---wp~Ge~~--------------~f~k~a~L~n~---g~~avrev 212 (403)
T COG3867 157 YTKYVLTTMKKEGILPDMVQVGNETN----GGFL---WPDGEGR--------------NFDKMAALLNA---GIRAVREV 212 (403)
T ss_pred HHHHHHHHHHHcCCCccceEeccccC----Ccee---ccCCCCc--------------ChHHHHHHHHH---Hhhhhhhc
Confidence 555555555 55678888999966 2222 6655321 12223345444 44555553
Q ss_pred hhccCCCeEEEEeeccccccCCCCHHHHHHHHHHHHHhhccccccccccccChhhhhhhhcCCCCCCHHHHhhhcCCccE
Q 046891 272 YQQAQKGKIGILLDFVWYEPHSRSKADNYAAQRARDFHIGWFLHPLTYGEYPRTMQENVGERLPKFTPEEVAMVKGSYDY 351 (520)
Q Consensus 272 ~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~f~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DF 351 (520)
.|.-+|-+.+. .|.+++. .+|+.|-+.+ -.-..|.
T Consensus 213 ---~p~ikv~lHla----~g~~n~~-------------y~~~fd~ltk-------------------------~nvdfDV 247 (403)
T COG3867 213 ---SPTIKVALHLA----EGENNSL-------------YRWIFDELTK-------------------------RNVDFDV 247 (403)
T ss_pred ---CCCceEEEEec----CCCCCch-------------hhHHHHHHHH-------------------------cCCCceE
Confidence 35556655443 2333221 1233332221 1234699
Q ss_pred EEEecCCceeeeCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCccccChHHHHHHHHHHHHHcCCCcEEEecCCC
Q 046891 352 LGVNQYTSYYMFDPPWPQSNISSYANDWDVGYAYDRNGVPIGRRANSGWLYIVPWGLYNALMYVKERYGNPTVMLSENGM 431 (520)
Q Consensus 352 lGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~ 431 (520)
||++||.- +. -.-..|...|..+.+||++ .+||.|.+.
T Consensus 248 ig~SyYpy--Wh---------------------------------------gtl~nL~~nl~dia~rY~K-~VmV~Etay 285 (403)
T COG3867 248 IGSSYYPY--WH---------------------------------------GTLNNLTTNLNDIASRYHK-DVMVVETAY 285 (403)
T ss_pred Eeeecccc--cc---------------------------------------CcHHHHHhHHHHHHHHhcC-eEEEEEecc
Confidence 99999941 00 0112477789999999997 599999888
Q ss_pred CC--CC------CCCcCc-----ccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccc-cCCCCcCccceEE
Q 046891 432 DN--PS------NYTLTH-----LLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFE-WLLGYTARFGITY 495 (520)
Q Consensus 432 ~~--~~------~~~~~~-----~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~E-W~~Gy~~RfGL~~ 495 (520)
+. ++ ..+..+ ++.=+-+..++++-|+.|..- -+.+=.|.|+|---=+.. -.+|+..-||.-|
T Consensus 286 ~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~~g~gwat~~~~~y 361 (403)
T COG3867 286 TYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVVLGSGWATSYAAKY 361 (403)
T ss_pred eeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceeccCCCccccchhhcc
Confidence 43 11 011111 122234566777777666542 455668999996543333 2234444444433
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00023 Score=76.14 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCC--C-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhh---CCC
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQG--A-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERY---GGL 183 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~--~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---ggw 183 (520)
++|+..||++|+|++|.-|.|-.+.+.+ . ...+...+.+.+++|+..++.||.+++.||+..-++-=++.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999865555532 1 233244455899999999999999999999976322212210 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCC--cceEEEecCccc
Q 046891 184 L-GRQVVKDYADFAEFCFKTFGDR--VKNWYTFNEPRV 218 (520)
Q Consensus 184 ~-~~~~~~~f~~ya~~~~~~~g~~--V~~W~t~NEp~~ 218 (520)
. ..+.++++.+--+.++.+|++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3577799999999999999883 667889999984
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.36 E-value=0.00073 Score=69.98 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--------CCCCcHHHHHh
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY--------HYDMPLALHER 179 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~~~ 179 (520)
.|++-++.||++|+|++-+-|.|.-.+|.+ |++|++|..=.+++|+.++++|+-+++-.- .-.+|.||...
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 488889999999999999999999999999 999999988899999999999999776432 13599999876
Q ss_pred hCCC---CChhhHHHHHHHHHHHHHHhCC-------CcceEEEecCcc
Q 046891 180 YGGL---LGRQVVKDYADFAEFCFKTFGD-------RVKNWYTFNEPR 217 (520)
Q Consensus 180 ~ggw---~~~~~~~~f~~ya~~~~~~~g~-------~V~~W~t~NEp~ 217 (520)
.+.. .++...+.-.+|.+.+++...+ -|..-++=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 3332 3456667777777777766633 366777777753
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=96.95 E-value=0.0075 Score=68.99 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=89.7
Q ss_pred hccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--------CCCCcHHHHH
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY--------HYDMPLALHE 178 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~~ 178 (520)
..|++=|+.||++|+|++-.=|.|.--||.+ |++|++|..=..++|+.+.+.|+-+++-.- .-.+|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 3588889999999999999999999999998 999999999999999999999998777432 4689999985
Q ss_pred hhCCC----CChhhHHHHHHHHHHHHHHhC---------CCcceEEEecCcc
Q 046891 179 RYGGL----LGRQVVKDYADFAEFCFKTFG---------DRVKNWYTFNEPR 217 (520)
Q Consensus 179 ~~ggw----~~~~~~~~f~~ya~~~~~~~g---------~~V~~W~t~NEp~ 217 (520)
. .|. .++.+.++-.+|.+.+++... .-|...++=||-.
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 4 332 356777777788888887763 3477888888864
No 28
>PLN02161 beta-amylase
Probab=96.73 E-value=0.0066 Score=65.22 Aligned_cols=111 Identities=20% Similarity=0.364 Sum_probs=87.3
Q ss_pred CchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-CC-----------
Q 046891 103 VDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-HY----------- 170 (520)
Q Consensus 103 ~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H~----------- 170 (520)
..+..-.+..++.||++|+..+-+.+=|.-+|+++.+++|| ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 46667788899999999999999999999999987799999 5599999999999999777665 32
Q ss_pred CCcHHHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 046891 171 DMPLALHER--------Y---GG----------------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 171 ~~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 218 (520)
-||+|+.+. | .| +..+.-++.|.+|-+-..++|.+... -||.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998863 0 12 22233557888888888888877664 37777553
No 29
>PLN02803 beta-amylase
Probab=96.73 E-value=0.0054 Score=66.21 Aligned_cols=107 Identities=20% Similarity=0.376 Sum_probs=84.1
Q ss_pred hccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-C-----------CCCcH
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-H-----------YDMPL 174 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P~ 174 (520)
.-.+..++.||++|+..+-+.+=|.-+|+++.+++|| ..|+++++.+++.|++..+.|. | --||+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 4478899999999999999999999999997799999 5599999999999999777665 3 25999
Q ss_pred HHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 046891 175 ALHER--------Y---GG----------------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 175 ~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 218 (520)
|+.+. | .| +..+.-++.|.+|-+-..++|.+... -||.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 98863 0 12 22334457788888888888877654 47777553
No 30
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.67 E-value=0.01 Score=62.28 Aligned_cols=100 Identities=23% Similarity=0.422 Sum_probs=57.4
Q ss_pred HHcCCCeeecCC---c------------ccccc--cCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHh
Q 046891 117 KKLNFDAYRFSI---S------------WSRIF--PQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHER 179 (520)
Q Consensus 117 ~~lG~~~~Rfsi---~------------Wsri~--P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 179 (520)
+.||++.+||.| + |.|.+ +..+|.+|+.+=+-=+.+++.++++|+.-++ ++-+..|.|+..-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 348999999877 3 33322 2223778876555556699999999999655 7888888888753
Q ss_pred h---CC-----CCChhhHHHHHHHHHHHHHHhCC---CcceEEEecCcc
Q 046891 180 Y---GG-----LLGRQVVKDYADFAEFCFKTFGD---RVKNWYTFNEPR 217 (520)
Q Consensus 180 ~---gg-----w~~~~~~~~f~~ya~~~~~~~g~---~V~~W~t~NEp~ 217 (520)
. |+ =+.++..+.|++|-..|+++|.. .+++-.++|||+
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQ 184 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TT
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCC
Confidence 1 11 24578899999999999999933 699999999998
No 31
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.66 E-value=0.002 Score=67.84 Aligned_cols=106 Identities=19% Similarity=0.391 Sum_probs=81.4
Q ss_pred hhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-C-----------CCCc
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-H-----------YDMP 173 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 173 (520)
..-.+.+++.||++|+..+-+.+=|.-+|+.+.+++|| ..|+++.+.+++.|++..+.|. | .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 34778999999999999999999999999997799999 5599999999999999887763 3 3689
Q ss_pred HHHHHh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 046891 174 LALHER-----------YGG--------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPR 217 (520)
Q Consensus 174 ~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 217 (520)
.|+.+. .|. |....+++.|.+|-+...++|.+.. -||-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 999753 222 5555559999999999999997765 5666644
No 32
>PLN00197 beta-amylase; Provisional
Probab=96.63 E-value=0.0071 Score=65.55 Aligned_cols=107 Identities=26% Similarity=0.420 Sum_probs=84.0
Q ss_pred hccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-C-----------CCCcH
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-H-----------YDMPL 174 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P~ 174 (520)
.-.+..++.||++|+..+-+.+=|.-+|+++.+++|| ..|+++++.+++.|++..+.|. | --||+
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 3478899999999999999999999999987799999 5599999999999999777665 3 25999
Q ss_pred HHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 046891 175 ALHER--------Y---GG----------------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 175 ~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 218 (520)
|+.+. | .| +..+.-++.|.+|-+-.-++|.+... -||.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 98863 0 12 22233368888888888888877655 36777553
No 33
>PLN02801 beta-amylase
Probab=96.46 E-value=0.014 Score=62.80 Aligned_cols=107 Identities=18% Similarity=0.383 Sum_probs=82.2
Q ss_pred hccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-C-----------CCCcH
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-H-----------YDMPL 174 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P~ 174 (520)
.-.+..+..||++|+..+-+.+=|.-+|.++.+++|| ..|+++++.++++|++..+.|. | .-||+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 3468889999999999999999999999987799999 5599999999999998766664 3 35999
Q ss_pred HHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 046891 175 ALHER--------Y---GG----------------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPR 217 (520)
Q Consensus 175 ~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 217 (520)
|+.+. | .| +..+.-++.|.+|-+-..++|.+...- -||.|..
T Consensus 114 WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~ 182 (517)
T PLN02801 114 WVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIE 182 (517)
T ss_pred HHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEE
Confidence 98863 0 11 222334688899988888888775421 2455543
No 34
>PLN02905 beta-amylase
Probab=96.17 E-value=0.025 Score=62.09 Aligned_cols=111 Identities=18% Similarity=0.330 Sum_probs=83.4
Q ss_pred CchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-C-----------C
Q 046891 103 VDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-H-----------Y 170 (520)
Q Consensus 103 ~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H-----------~ 170 (520)
..+..-.+..+..||++|+..+-+.+=|.-+|+++.+++|| ..|+++++.+++.|++..+.|. | -
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 34566688899999999999999999999999987799999 5599999999999999777665 3 2
Q ss_pred CCcHHHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 046891 171 DMPLALHER--------Y---GG----------------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPR 217 (520)
Q Consensus 171 ~~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 217 (520)
-||+|+.+. | .| ...+.-++.|.+|-+-..++|.+...- -||.|..
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 431 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVE 431 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Confidence 599998863 0 12 122344578888888777777664311 2455543
No 35
>PLN02705 beta-amylase
Probab=96.12 E-value=0.026 Score=61.84 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=81.8
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-C-----------CCC
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-H-----------YDM 172 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 172 (520)
+-.-.+..++.||++||..+-+.+=|.-+|+++.+++|| ..|+++++.+++.|++..+.|. | --|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 345578899999999999999999999999987799999 5599999999999999776664 3 259
Q ss_pred cHHHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 046891 173 PLALHER--------Y---GG----------------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPR 217 (520)
Q Consensus 173 P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 217 (520)
|+|+.+. | -| ...+.-++.|.+|.+..-++|.+...- -||.|..
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 413 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVE 413 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEE
Confidence 9998863 0 11 122334588888888888888664311 2455543
No 36
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.05 E-value=0.034 Score=55.20 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccc
Q 046891 406 WGLYNALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFE 482 (520)
Q Consensus 406 ~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~E 482 (520)
.++...|..++++|++ ||.|||-|+.... ..-.++...+|+++-+..+ +.--.|.+|++.+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~k-PIWITEf~~~~~~-----~~~~~~~~~~fl~~~~~~l----d~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGK-PIWITEFGCWNGG-----SQGSDEQQASFLRQALPWL----DSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhCC-CEEEEeecccCCC-----CCCCHHHHHHHHHHHHHHH----hcCCCeeEEEecccccccC
Confidence 3688889999999995 7999999986511 1224566666766665555 4447899999999555433
No 37
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=94.92 E-value=0.62 Score=47.82 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChh
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQ 187 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 187 (520)
-.+.|+.+||+||+|+.|+= -|-|.. + .+.-...|.++||=.++.|... ..-+ ++...| ..=
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~---------n-Hd~CM~~~~~aGIYvi~Dl~~p--~~sI-~r~~P~-~sw 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK---------N-HDECMSAFADAGIYVILDLNTP--NGSI-NRSDPA-PSW 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES-BT--TBS---TTS------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC---------C-HHHHHHHHHhCCCEEEEecCCC--Cccc-cCCCCc-CCC
Confidence 57999999999999999974 233443 2 5788899999999999999643 1111 110111 011
Q ss_pred hHHHHHHHHHHHHHHhCC--CcceEEEecCc
Q 046891 188 VVKDYADFAEFCFKTFGD--RVKNWYTFNEP 216 (520)
Q Consensus 188 ~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp 216 (520)
....|.+|..+ ++.|.. .|-....=||-
T Consensus 116 ~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 116 NTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp -HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred CHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 22445555544 556655 36666666663
No 38
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.86 E-value=0.14 Score=52.27 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=63.4
Q ss_pred cHHHHHHHHHcCCCeeecCC--ccccc--------cc--CCC------CCCChhHHHHHHHHHHHHHHcCCeeEEEecCC
Q 046891 109 YKEDIDLMKKLNFDAYRFSI--SWSRI--------FP--QGA------GRVNWKGVAYYNRLIDYMLEQGITPYANLYHY 170 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi--~Wsri--------~P--~~~------g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~ 170 (520)
++.=++..++-|+|.+|+.+ .|... .| ..+ ..+|++=.++.+++|+.|.++||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447889999999999998 55443 11 110 2379999999999999999999999887766
Q ss_pred CCcHHHHHhhCCCCC---hhhHHHHHHHHHHHHHHhCCC-cceEEEecCc
Q 046891 171 DMPLALHERYGGLLG---RQVVKDYADFAEFCFKTFGDR-VKNWYTFNEP 216 (520)
Q Consensus 171 ~~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~g~~-V~~W~t~NEp 216 (520)
+.|. .+ +.|-. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 11 44432 233567788889999999997 3679998884
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.52 E-value=0.2 Score=46.98 Aligned_cols=102 Identities=18% Similarity=0.363 Sum_probs=68.3
Q ss_pred hccHHHHHHHHHcCCCeeecCCccccc-----ccCCC--CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHh
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRI-----FPQGA--GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHER 179 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri-----~P~~~--g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 179 (520)
.+|+++++.|+++|++++=+- |+.. .|..- +.+.....+....+++++.+.||+.++.|+.. |.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhc-
Confidence 469999999999999987432 3333 23220 12333455779999999999999999999863 344442
Q ss_pred hCCCCChh-hHHHHHHHHHHHHHHhCCC--cceEEEecCcc
Q 046891 180 YGGLLGRQ-VVKDYADFAEFCFKTFGDR--VKNWYTFNEPR 217 (520)
Q Consensus 180 ~ggw~~~~-~~~~f~~ya~~~~~~~g~~--V~~W~t~NEp~ 217 (520)
.+.+ -++.=..-++.+.++||.. +..|-+-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2233344667788888884 77788877765
No 40
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.11 E-value=0.31 Score=54.23 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--------cCCCCcHHHHHh
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL--------YHYDMPLALHER 179 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~~ 179 (520)
.|++=|+.+|++|+|+...=+.|.--+|.+ |++|++|.-=..++|..+.++|+=+++-+ .|-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 478889999999999999999999999999 99999998888899999999998654432 367899999876
Q ss_pred hCC---CCChhhHHHHHHHHHHHHHHh-------CCCcceEEEecCcc
Q 046891 180 YGG---LLGRQVVKDYADFAEFCFKTF-------GDRVKNWYTFNEPR 217 (520)
Q Consensus 180 ~gg---w~~~~~~~~f~~ya~~~~~~~-------g~~V~~W~t~NEp~ 217 (520)
-|. =.|+.+..++.+|.+.++... |.=|..-++=||-.
T Consensus 129 pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 332 246788888999998888843 33477788888865
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.59 E-value=0.37 Score=57.63 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=65.1
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec---CCCCcHHHHHhhC
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY---HYDMPLALHERYG 181 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~g 181 (520)
....++.||++||++|+|++|+| -.|.. .++.+.|=+.||=++--.. |.-.|. . -
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 45778999999999999999996 23432 1566888899997665542 211111 0 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCC--cceEEEecCcc
Q 046891 182 GLLGRQVVKDYADFAEFCFKTFGDR--VKNWYTFNEPR 217 (520)
Q Consensus 182 gw~~~~~~~~f~~ya~~~~~~~g~~--V~~W~t~NEp~ 217 (520)
...+++..+.+.+=++.+++|..+. |-.|..-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1134667777888889999999885 89999999974
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.62 E-value=0.63 Score=55.71 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=64.2
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec---C-CCCcHHHHHhh
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY---H-YDMPLALHERY 180 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~~~ 180 (520)
....++.||++||++|+|++|+|. .|.. ..+.+.|-+.||=++--.. | |.....+. +
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH-----yP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~--~ 413 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH-----YPND------------PRFYELCDIYGLFVMAETDVESHGFANVGDIS--R 413 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCCC------------HHHHHHHHHCCCEEEECCcccccCcccccccc--c
Confidence 357889999999999999999962 4543 2677889999997665331 2 21110000 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCC--cceEEEecCc
Q 046891 181 GGLLGRQVVKDYADFAEFCFKTFGDR--VKNWYTFNEP 216 (520)
Q Consensus 181 ggw~~~~~~~~f~~ya~~~~~~~g~~--V~~W~t~NEp 216 (520)
.-.++...+.|.+=++.+++|.++. |-.|..-||.
T Consensus 414 -~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 414 -ITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 0124556677777789999999885 8899999996
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=88.47 E-value=2.1 Score=49.85 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=67.7
Q ss_pred CchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCC
Q 046891 103 VDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGG 182 (520)
Q Consensus 103 ~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 182 (520)
+-.+..+..|+++||++|+|++|.| =.|+. .++.+.|-+.||=++=-..+ +- +|+
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~-----~~---~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMI-----ET---HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecch-----hh---cCC
Confidence 4445669999999999999999999 44543 26677888889976554332 11 244
Q ss_pred CCChhhHHHHHHHHHHHHHHhCC--CcceEEEecCcc
Q 046891 183 LLGRQVVKDYADFAEFCFKTFGD--RVKNWYTFNEPR 217 (520)
Q Consensus 183 w~~~~~~~~f~~ya~~~~~~~g~--~V~~W~t~NEp~ 217 (520)
..+++..+....=++.+++|-.+ .|..|..=||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 46677777788888999999877 489999999965
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=86.56 E-value=0.29 Score=52.54 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=80.4
Q ss_pred cHHHHHHHHHcCCCeeecCCcc-cccccCCCCCCChhH-HHHHHHHHHHHHHcCCeeEEEec----CCCCcHHHHHhhC-
Q 046891 109 YKEDIDLMKKLNFDAYRFSISW-SRIFPQGAGRVNWKG-VAYYNRLIDYMLEQGITPYANLY----HYDMPLALHERYG- 181 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~W-sri~P~~~g~~n~~g-l~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~g- 181 (520)
.+.|++.++.+|++..|++|-= ...--.. |..|.+. ..+...+++.+...+|+.++||. |+.--.|-..=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~~-G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDKE-GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhhh-ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4578899999999999999532 2222222 7778776 88999999999999999999987 3322222111001
Q ss_pred -----CCCChhhHHHHHHHHHHHHHHhCCC--cceEEEecCccc
Q 046891 182 -----GLLGRQVVKDYADFAEFCFKTFGDR--VKNWYTFNEPRV 218 (520)
Q Consensus 182 -----gw~~~~~~~~f~~ya~~~~~~~g~~--V~~W~t~NEp~~ 218 (520)
-...+.++.-|.+|++.+++.|+.. +-.|..-|||.+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 2456788889999999999988774 688999999765
No 45
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=85.94 E-value=1.7 Score=43.03 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCC--------------CCcHHHHH----------------hhCC----CCChh---hH
Q 046891 147 AYYNRLIDYMLEQGITPYANLYHY--------------DMPLALHE----------------RYGG----LLGRQ---VV 189 (520)
Q Consensus 147 ~~y~~~i~~l~~~gi~p~vtL~H~--------------~~P~~l~~----------------~~gg----w~~~~---~~ 189 (520)
+.++.+|+.-+++|.++|+||.=- ..|.|-.. +.++ ..+|. ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 678999999999999999998621 12221100 0011 22333 11
Q ss_pred HHHHHHHHHHHHHhCCC-----cceEEEecCccccccccccCCCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHH
Q 046891 190 KDYADFAEFCFKTFGDR-----VKNWYTFNEPRVIAALGFDSGINPPSRCSKEVNNCTEGDSGTEPYTAAHNMILSHASA 264 (520)
Q Consensus 190 ~~f~~ya~~~~~~~g~~-----V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a 264 (520)
.+-.+++..+..+||.. |++|..-|||.+-..- + .-++|-. ..+.-+.....+.|+|
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T-H-~dVHP~~----------------~t~~El~~r~i~~Aka 165 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST-H-RDVHPEP----------------VTYDELRDRSIEYAKA 165 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH-T-TTT--S-------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc-c-cccCCCC----------------CCHHHHHHHHHHHHHH
Confidence 23344567777777765 9999999999854210 0 0123221 2344455666777777
Q ss_pred HHHHHHHhhccCCCeE-EEEeec
Q 046891 265 VQRYRENYQQAQKGKI-GILLDF 286 (520)
Q Consensus 265 ~~~~r~~~~~~~~g~I-Gi~~~~ 286 (520)
+|..- |.++| |.+.-.
T Consensus 166 iK~~D------P~a~v~GP~~wg 182 (239)
T PF12891_consen 166 IKAAD------PDAKVFGPVEWG 182 (239)
T ss_dssp HHHH-------TTSEEEEEEE-S
T ss_pred HHhhC------CCCeEeechhhc
Confidence 66433 67765 766443
No 46
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=85.40 E-value=9 Score=39.28 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=61.9
Q ss_pred hhccHHHHHHHHHcCCCeeecCC---cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCC
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFSI---SWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGG 182 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfsi---~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 182 (520)
..||.+-.++++++|+|+.-+.= .-..+-| +-++-..++-+.++..||++.+++. |..|.-| ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~--------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP--------EYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST--------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH--------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 46888999999999999876532 2222222 2356678999999999999999985 6777654 55
Q ss_pred -----CCChhhHHHHHHHHHHHHHHhCC
Q 046891 183 -----LLGRQVVKDYADFAEFCFKTFGD 205 (520)
Q Consensus 183 -----w~~~~~~~~f~~ya~~~~~~~g~ 205 (520)
.++++++.++.+=++.+.++.-|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999998765
No 47
>smart00642 Aamy Alpha-amylase domain.
Probab=83.72 E-value=2.5 Score=39.51 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=44.0
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCccccccc--CCCC-------CCC--hhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFP--QGAG-------RVN--WKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P--~~~g-------~~n--~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
.+....+-++.+++||++++-++--+..... ...| .++ .-..+=++++|++|+++||++++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3555677788999999999988776554431 1100 111 1134558999999999999999866
No 48
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=82.70 E-value=1.8 Score=45.76 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=71.4
Q ss_pred HHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCC-CCCh-hhHHHHH
Q 046891 116 MKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGG-LLGR-QVVKDYA 193 (520)
Q Consensus 116 ~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg-w~~~-~~~~~f~ 193 (520)
-+|+|++-.|+---|.=++.. =-+++ .++++++|.+.+.|+.=+.+-.||+.+.-....|-+ -..+ ...+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468899999988888822222 23566 889999999999994444456688887655543333 2223 4789999
Q ss_pred HHHHHHHHHhCCC---cceEEEecCcccc
Q 046891 194 DFAEFCFKTFGDR---VKNWYTFNEPRVI 219 (520)
Q Consensus 194 ~ya~~~~~~~g~~---V~~W~t~NEp~~~ 219 (520)
+++..|+.++|-+ .-....+||||..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcc
Confidence 9999999999973 4456778999855
No 49
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=77.81 E-value=2.1 Score=44.22 Aligned_cols=87 Identities=21% Similarity=0.411 Sum_probs=41.3
Q ss_pred HHHHHHHHHHH--cCCCcEEEecCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccCccc
Q 046891 408 LYNALMYVKER--YGNPTVMLSENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAIDDGANV-----TGYFAWSLLDN 480 (520)
Q Consensus 408 l~~~L~~~~~r--Y~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V-----~GY~~WSl~Dn 480 (520)
+.+.+...-++ +++.||+|||+|++..... ..... .- +.+.+.+.+.+.+|.+. .-+++-+++|-
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~--~a~~~--nA----~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE 283 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP--GATPE--NA----QAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE 283 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST--TCSHH--HH----HHHHHHHHHHCCGBBSSSBSS---EEES-SB--
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC--CCCcc--hh----HHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC
Confidence 44555555555 4567899999999985321 01111 12 33444455555566554 34677888885
Q ss_pred cccCCC--CcCccceEEecCCCCCccccch
Q 046891 481 FEWLLG--YTARFGITYVDFDTLQRIPKMS 508 (520)
Q Consensus 481 ~EW~~G--y~~RfGL~~VD~~~~~R~~K~S 508 (520)
.|..| .++.|||++-| |+||-+
T Consensus 284 -~~K~~~~~E~~wGlf~~d-----~~~ky~ 307 (310)
T PF00332_consen 284 -NWKPGPEVERHWGLFYPD-----GTPKYD 307 (310)
T ss_dssp -TTSSSSGGGGG--SB-TT-----SSBSS-
T ss_pred -cCCCCCcccceeeeECCC-----CCeecC
Confidence 56655 57889999987 666644
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=77.32 E-value=6.4 Score=35.47 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCeeecCCc--cc-ccccCCCCC--CChhHHHHHHHHHHHHHHcCCeeEEEecC
Q 046891 111 EDIDLMKKLNFDAYRFSIS--WS-RIFPQGAGR--VNWKGVAYYNRLIDYMLEQGITPYANLYH 169 (520)
Q Consensus 111 eDi~l~~~lG~~~~Rfsi~--Ws-ri~P~~~g~--~n~~gl~~y~~~i~~l~~~gi~p~vtL~H 169 (520)
+=++.||++|+|+.-+... +. --.|...|. ...+ -+...++|++|+++||++++=+-.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 3468899999999998332 11 113332221 2333 378999999999999999886654
No 51
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=76.49 E-value=15 Score=37.39 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=73.0
Q ss_pred CeeeeecccCCCcccCCCCCCcCCchhhccHHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHH
Q 046891 80 PCIWDVYVHTPGNIANNATADVTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLE 158 (520)
Q Consensus 80 ~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~ 158 (520)
.+.|+-|....+. ..+..+.-.+.++++=|+..+++|+..+=+.--|+.-.+... +......-....++++-.++
T Consensus 9 k~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 4677755542111 112234456888999999999999999999999997332221 11111111446799999999
Q ss_pred cCCeeEEEecCCC------CcHHHHHh---------------hCCCCChhhHHHHHHHHHHHHHH
Q 046891 159 QGITPYANLYHYD------MPLALHER---------------YGGLLGRQVVKDYADFAEFCFKT 202 (520)
Q Consensus 159 ~gi~p~vtL~H~~------~P~~l~~~---------------~ggw~~~~~~~~f~~ya~~~~~~ 202 (520)
+|+.+++-.+|-+ +=.-+.+. |=+-.+.+.++.+.+.++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999998866 21112111 11235567888999999888873
No 52
>PRK12313 glycogen branching enzyme; Provisional
Probab=69.58 E-value=19 Score=40.91 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=62.4
Q ss_pred hhccHHHH-HHHHHcCCCeeecCCc--------c-------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--
Q 046891 106 YHRYKEDI-DLMKKLNFDAYRFSIS--------W-------SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL-- 167 (520)
Q Consensus 106 y~ry~eDi-~l~~~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL-- 167 (520)
|.-..+.+ +-+|+||++++=+.=- | -.|.|.- |. .+=+++||++|+++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 55556674 9999999999875442 2 1122222 33 2448999999999999999974
Q ss_pred cCCCCcH----HHH--------H---h-hCC-------CCChhhHHHHHHHHHHHHHHhCCCcceEEE
Q 046891 168 YHYDMPL----ALH--------E---R-YGG-------LLGRQVVKDYADFAEFCFKTFGDRVKNWYT 212 (520)
Q Consensus 168 ~H~~~P~----~l~--------~---~-~gg-------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t 212 (520)
.|..... ++. + . +.+ +.|+++++.+.+-++.-+++|| |+.|=.
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R~ 308 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLRV 308 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEEE
Confidence 4643211 110 0 0 012 3468888888888888888874 444433
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=69.30 E-value=21 Score=41.38 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=61.9
Q ss_pred hhccHHHH-HHHHHcCCCeeecCCc--------cc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--
Q 046891 106 YHRYKEDI-DLMKKLNFDAYRFSIS--------WS-------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL-- 167 (520)
Q Consensus 106 y~ry~eDi-~l~~~lG~~~~Rfsi~--------Ws-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL-- 167 (520)
|.-..+.+ +-+|+||++++=+.-- |. .|.|.- |. .+=.++||++|+++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 44445564 7889999999876542 21 122222 33 3448899999999999999975
Q ss_pred cCCCCc-----------HHHHH-----hhC-------CCCChhhHHHHHHHHHHHHHHhCCCcceEEE
Q 046891 168 YHYDMP-----------LALHE-----RYG-------GLLGRQVVKDYADFAEFCFKTFGDRVKNWYT 212 (520)
Q Consensus 168 ~H~~~P-----------~~l~~-----~~g-------gw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t 212 (520)
.|+... .+... .+. .+.++++++.+.+-++.-+++|| |+.|=.
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R~ 403 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLRV 403 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEEE
Confidence 465221 11110 011 24578888888888888888874 444443
No 54
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=68.61 E-value=19 Score=37.17 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=64.1
Q ss_pred hccHHHHHHHHHcCCCeeecCC-------------cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe-cC---
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSI-------------SWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL-YH--- 169 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi-------------~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL-~H--- 169 (520)
...++=++.|+++|+|++=|.+ .|++..+...|. + .|.+-...+|++++++||+...-+ +.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 4467788999999999765544 344433321111 1 245668899999999999987654 11
Q ss_pred -------CCCcHHHHHh-------h----CC--CCC---hhhHHHHHHHHHHHHHHhC
Q 046891 170 -------YDMPLALHER-------Y----GG--LLG---RQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 170 -------~~~P~~l~~~-------~----gg--w~~---~~~~~~f~~ya~~~~~~~g 204 (520)
-..|.|+... + |+ |+| |++.+...+-++.++++|.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1346665421 1 21 444 6889999999999999994
No 55
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=68.36 E-value=19 Score=40.24 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=41.4
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCc--------c-------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSIS--------W-------SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL-- 167 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL-- 167 (520)
-|.-..+-++-+++||++++-+.-- | -.+.|.- |. ++=+++||++|+++||++|+.+
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3555667789999999999875431 2 1122221 33 3448999999999999999965
Q ss_pred cCC
Q 046891 168 YHY 170 (520)
Q Consensus 168 ~H~ 170 (520)
.|.
T Consensus 183 NH~ 185 (542)
T TIGR02402 183 NHF 185 (542)
T ss_pred CCC
Confidence 364
No 56
>PLN02361 alpha-amylase
Probab=68.01 E-value=13 Score=39.82 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=47.2
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCcccccccCCCCC-----CCh--hHHHHHHHHHHHHHHcCCeeEEEe--cC
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGR-----VNW--KGVAYYNRLIDYMLEQGITPYANL--YH 169 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~-----~n~--~gl~~y~~~i~~l~~~gi~p~vtL--~H 169 (520)
.+|....+-++-+++||++++=++-...-.-+.|=.. +|. -..+=+++||++|+++||++++.+ +|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4888999999999999999998776554333332101 111 122448999999999999999854 56
No 57
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=62.76 E-value=17 Score=36.07 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-C--C-----C--ChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-G--R-----V--NWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g--~-----~--n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
.+-|+-+|+||++++-++=-+. .|... | . + ..-..+=+++||++|+++||++|+.+-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 5668899999999999886554 22111 1 0 1 122345689999999999999999774
No 58
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=62.65 E-value=13 Score=40.61 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=44.5
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCccccc--------ccCCC---C------CCChh--HHHHHHHHHHHHHHcCCeeE
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWSRI--------FPQGA---G------RVNWK--GVAYYNRLIDYMLEQGITPY 164 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri--------~P~~~---g------~~n~~--gl~~y~~~i~~l~~~gi~p~ 164 (520)
+.|.-..+-++-+++||+++.=++-...-. .|..- + .+|.. ..+=+++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 445556778899999999999877644322 11100 0 12211 23458999999999999999
Q ss_pred EEe--cCC
Q 046891 165 ANL--YHY 170 (520)
Q Consensus 165 vtL--~H~ 170 (520)
+.+ .|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 965 464
No 59
>PLN00196 alpha-amylase; Provisional
Probab=60.54 E-value=17 Score=39.41 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=45.4
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCcccccccCCCC-----CCCh---hHHHHHHHHHHHHHHcCCeeEEE--ecCC
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAG-----RVNW---KGVAYYNRLIDYMLEQGITPYAN--LYHY 170 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g-----~~n~---~gl~~y~~~i~~l~~~gi~p~vt--L~H~ 170 (520)
+|....+.+.-+++||+++.=++-......+.|=. .+|. -..+=+++||++|+++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 45667888999999999999888655433222211 1221 12234899999999999999986 4563
No 60
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=60.03 E-value=28 Score=41.92 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCcEEEecCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCccccccC---C-----CCcCcc-
Q 046891 421 NPTVMLSENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLLDNFEWL---L-----GYTARF- 491 (520)
Q Consensus 421 ~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~---~-----Gy~~Rf- 491 (520)
..|++++|.|.+... ..|. +++-..+++.--.+.|=|.|.++|-=-.. + +|.--|
T Consensus 505 ~kP~i~~Ey~hamgn---~~g~-------------~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g 568 (1021)
T PRK10340 505 PKPRILCEYAHAMGN---GPGG-------------LTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYG 568 (1021)
T ss_pred CCcEEEEchHhccCC---CCCC-------------HHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCC
Confidence 458999999877631 1111 23444567777899999999999941100 1 121122
Q ss_pred -----------ceEEecCCCCCccccchHHHHHHHHh
Q 046891 492 -----------GITYVDFDTLQRIPKMSAYWFKQLLQ 517 (520)
Q Consensus 492 -----------GL~~VD~~~~~R~~K~S~~~y~~ii~ 517 (520)
||+..| |+||++++.||++.+
T Consensus 569 ~~p~~~~f~~~Glv~~d-----r~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 569 DYPNNYNFCIDGLIYPD-----QTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCCcCcccceeECCC-----CCCChhHHHHHHhcc
Confidence 565444 899999999999875
No 61
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=59.87 E-value=17 Score=40.49 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=41.6
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCccc--------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWS--------------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Ws--------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
.-+.-..+-++-+++||++++=++--.. +|.|.- | ..+=++++|++|+++||++|+.+-
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-G-----t~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-G-----TMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455567778999999999986654332 222221 2 235588999999999999999763
No 62
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=59.17 E-value=37 Score=34.84 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=51.0
Q ss_pred HHHHHcCCCeeecCCc--ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCC------
Q 046891 114 DLMKKLNFDAYRFSIS--WSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLG------ 185 (520)
Q Consensus 114 ~l~~~lG~~~~Rfsi~--Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~------ 185 (520)
+.+++.|++.+-++.. -..-.|.-.|.............|..|+++|++++|.+ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5677889998876643 22222221011110112445678999999999999999 55554
Q ss_pred hhhHHHHHHHHHHHHHHhCC
Q 046891 186 RQVVKDYADFAEFCFKTFGD 205 (520)
Q Consensus 186 ~~~~~~f~~ya~~~~~~~g~ 205 (520)
+..++.|++....+.++||=
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGL 105 (294)
T ss_pred cccHHHHHHHHHHHHHHhCC
Confidence 45778888888888888854
No 63
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=58.21 E-value=24 Score=35.84 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhh
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQV 188 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 188 (520)
+.|++++++.|++..++.++=|...-... +.--.+.++-..++|+.+++.|+++.+++-+|.-|. +..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~~ 145 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RDS 145 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cCC
Confidence 56899999999999999986554443321 334567888899999999999999999999877663 123
Q ss_pred HHHHHHHHHHHHH
Q 046891 189 VKDYADFAEFCFK 201 (520)
Q Consensus 189 ~~~f~~ya~~~~~ 201 (520)
++.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~ 158 (280)
T cd07945 146 PDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777654
No 64
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=58.03 E-value=17 Score=38.23 Aligned_cols=96 Identities=11% Similarity=0.241 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCeeecCC-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChh
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SWS-RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQ 187 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 187 (520)
+|.++.|+++|++.+-+++ +-+ ++...- |+.. ..+-..+.|+.+++.||..+-.-.=+++|. +
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l-~R~~--~~~~~~~ai~~l~~~g~~~v~~dli~GlPg------------q 163 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYL-GRIH--TFEEFLENYKLARKLGFNNINVDLMFGLPN------------Q 163 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCC------------C
Confidence 6889999999999655555 221 222221 3221 124577889999999997553333456663 2
Q ss_pred hHHHHHHHHHHHHHHhCCCcceEEEecCccccc
Q 046891 188 VVKDYADFAEFCFKTFGDRVKNWYTFNEPRVIA 220 (520)
Q Consensus 188 ~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~ 220 (520)
+.+.|.+-.+.+.+.=-+.|..+...-+|++..
T Consensus 164 t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 164 TLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 345566666665442224555555555776543
No 65
>PRK12568 glycogen branching enzyme; Provisional
Probab=57.68 E-value=38 Score=39.18 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=58.7
Q ss_pred hhccHHH-HHHHHHcCCCeeecCC--------ccc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-
Q 046891 106 YHRYKED-IDLMKKLNFDAYRFSI--------SWS-------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY- 168 (520)
Q Consensus 106 y~ry~eD-i~l~~~lG~~~~Rfsi--------~Ws-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~- 168 (520)
|.-..+. |+-+|+||++++-+.- +|. .+.|.- |. .+=++.||++|.++||++|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444445 6889999999985432 342 112221 33 34489999999999999999754
Q ss_pred -CCCC----------c-HHHH-H-h---hC-------CCCChhhHHHHHHHHHHHHHHhC
Q 046891 169 -HYDM----------P-LALH-E-R---YG-------GLLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 169 -H~~~----------P-~~l~-~-~---~g-------gw~~~~~~~~f~~ya~~~~~~~g 204 (520)
|+.- + .+.+ + + +. .+.++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1 1100 0 0 11 24567888888888888888874
No 66
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=56.40 E-value=60 Score=36.86 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred hhccHHHH-HHHHHcCCCeeecCC-ccc--------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec-
Q 046891 106 YHRYKEDI-DLMKKLNFDAYRFSI-SWS--------------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY- 168 (520)
Q Consensus 106 y~ry~eDi-~l~~~lG~~~~Rfsi-~Ws--------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~- 168 (520)
|.-..+.+ +-+++||++++=+.- ..+ .+.|.- |. .+=+++||++|+++||++|+.+-
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 44455665 889999999998733 222 111111 22 23488999999999999999754
Q ss_pred -CCCC-----------cHHHHH----h-hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 046891 169 -HYDM-----------PLALHE----R-YGG-------LLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 169 -H~~~-----------P~~l~~----~-~gg-------w~~~~~~~~f~~ya~~~~~~~g 204 (520)
|... |.+... . +.. +.++++++.+.+-++.-+++|+
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5421 112110 0 011 2468899999999999998885
No 67
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=55.79 E-value=30 Score=34.13 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhh
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQV 188 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 188 (520)
+++++++++.|++.+|++++-+.+.-.-. +.=.+..++...+.|+.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999998663211110 11122345778899999999999999999765544 133
Q ss_pred HHHHHHHHHHHHHHhC
Q 046891 189 VKDYADFAEFCFKTFG 204 (520)
Q Consensus 189 ~~~f~~ya~~~~~~~g 204 (520)
.+.+.++++.+. .+|
T Consensus 145 ~~~l~~~~~~~~-~~g 159 (265)
T cd03174 145 PEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHH-HcC
Confidence 455666666654 344
No 68
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=55.48 E-value=20 Score=40.14 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=42.4
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCcccccccCCCCC--------CC--hhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGR--------VN--WKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~--------~n--~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
.-+.-..+.++-+++||++++=++--+.. |..+.. +| .-..+=+++||++++++||++|+.+-
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555678899999999999977654321 211101 11 11235589999999999999998663
No 69
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=54.84 E-value=34 Score=34.15 Aligned_cols=80 Identities=21% Similarity=0.168 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhh
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQV 188 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 188 (520)
.+|++.+.+.|++..|+.++.|.+.-... +.=.+++++-..++++.++++|+++.+++.. .+.. .
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~---~ 137 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------ASRA---D 137 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CCCC---C
Confidence 78999999999999999998876643311 3334567888999999999999988766532 2222 3
Q ss_pred HHHHHHHHHHHHHHhC
Q 046891 189 VKDYADFAEFCFKTFG 204 (520)
Q Consensus 189 ~~~f~~ya~~~~~~~g 204 (520)
.+...+.++.+.+ .|
T Consensus 138 ~~~~~~~~~~~~~-~G 152 (259)
T cd07939 138 PDFLIEFAEVAQE-AG 152 (259)
T ss_pred HHHHHHHHHHHHH-CC
Confidence 4556666666543 44
No 70
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=54.71 E-value=31 Score=36.46 Aligned_cols=61 Identities=18% Similarity=0.100 Sum_probs=48.0
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecC
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYH 169 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H 169 (520)
.++|++.+.+.|++.+|++++-|.+.-... +.-..+.++-..+.|+.+++.|+++.+++-.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 489999999999999999887776644321 3334557788899999999999998888743
No 71
>PRK14706 glycogen branching enzyme; Provisional
Probab=54.29 E-value=40 Score=38.50 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHHcCCCeeecCCcccccccCC-C-C--CCC-------hhHHHHHHHHHHHHHHcCCeeEEEec--CCC---------
Q 046891 114 DLMKKLNFDAYRFSISWSRIFPQG-A-G--RVN-------WKGVAYYNRLIDYMLEQGITPYANLY--HYD--------- 171 (520)
Q Consensus 114 ~l~~~lG~~~~Rfsi~Wsri~P~~-~-g--~~n-------~~gl~~y~~~i~~l~~~gi~p~vtL~--H~~--------- 171 (520)
+-+|+||++++-+.--=. .|.. . | ..+ .-..+=++.||++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 668999999987543100 1111 0 0 001 01123488999999999999998643 532
Q ss_pred --CcHH-HHHhhCC-----------CCChhhHHHHHHHHHHHHHHhC
Q 046891 172 --MPLA-LHERYGG-----------LLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 172 --~P~~-l~~~~gg-----------w~~~~~~~~f~~ya~~~~~~~g 204 (520)
.|.+ ..+...| ..++++++.+..=|+.-+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0110011 2367888888888888888884
No 72
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=53.63 E-value=75 Score=32.49 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=64.1
Q ss_pred cHHHHHHHHHcCC--CeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCC---CCcHHHHH--h--
Q 046891 109 YKEDIDLMKKLNF--DAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHY---DMPLALHE--R-- 179 (520)
Q Consensus 109 y~eDi~l~~~lG~--~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~--~-- 179 (520)
.++-++.+++.|+ +++=+.+.|.+-.-.++=.+|.+-.---+.+|+.|+++|+++++.+.-+ +.|..-+- +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 5677888999994 4566777787432111112333322335799999999999988876533 22322110 0
Q ss_pred ---------h--------CC---CCChhhHHHHHHHHHHHHHHhCCCcce-EEEecCc
Q 046891 180 ---------Y--------GG---LLGRQVVKDYADFAEFCFKTFGDRVKN-WYTFNEP 216 (520)
Q Consensus 180 ---------~--------gg---w~~~~~~~~f~~ya~~~~~~~g~~V~~-W~t~NEp 216 (520)
+ ++ ++||+.++.|.+..+.+.+ . .|++ |+=+||+
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~--Gid~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-M--GVDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-h--CCcEEecCCCCC
Confidence 0 11 7889999999888776554 3 3554 4447886
No 73
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=53.33 E-value=40 Score=37.00 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=43.3
Q ss_pred hhhccHHH-----HHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc
Q 046891 105 QYHRYKED-----IDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP 173 (520)
Q Consensus 105 ~y~ry~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P 173 (520)
.|..|.+| ++.+.+.|++.+|+.++-+.+ +-....|+.++++|+....++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 36668888 899999999999999865542 335677888899999888888664445
No 74
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=52.70 E-value=50 Score=33.44 Aligned_cols=53 Identities=13% Similarity=0.324 Sum_probs=39.6
Q ss_pred CcCCchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 100 DVTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 100 ~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
+-+|..=..|..|+++++.-+. ..|. . | -|... ..++...+.+.|++.++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~-------Y----~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRT-------Y----G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEE-------e----e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 4478888899999999999886 4442 1 2 23322 45888999999999999884
No 75
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.47 E-value=46 Score=34.91 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=45.9
Q ss_pred HHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCC
Q 046891 113 IDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDM 172 (520)
Q Consensus 113 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~ 172 (520)
++.++++|.+++-+-+-|. |+....+|..-+++..++.++|.+.||.-++-+.-++.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 5779999999999999887 55323468888899999999999999988886544443
No 76
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=52.44 E-value=37 Score=34.28 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCeeecCCccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEE
Q 046891 110 KEDIDLMKKLNFDAYRFSISWS-RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYAN 166 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Ws-ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vt 166 (520)
+|.++.|+++|++.+-++++-+ .+.+.-.+..+. +.+.+.++.++++||...++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~---~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTY---DDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999821 133331122233 66788999999999985544
No 77
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=52.31 E-value=26 Score=40.71 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=58.8
Q ss_pred chhhccH-HHHHHHHHcCCCeeecCCcccc---------------cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 104 DQYHRYK-EDIDLMKKLNFDAYRFSISWSR---------------IFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 104 d~y~ry~-eDi~l~~~lG~~~~Rfsi~Wsr---------------i~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
..|.-.. +-+..+|+||++++-+.--... +.|.- |. .+=++++|++|.++||++|+.+
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 3454433 3489999999999976643221 11211 32 2448899999999999999976
Q ss_pred cC--CCC-------------cHHHHHhhCC-----------CCChhhHHHHHHHHHHHHHHhC
Q 046891 168 YH--YDM-------------PLALHERYGG-----------LLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 168 ~H--~~~-------------P~~l~~~~gg-----------w~~~~~~~~f~~ya~~~~~~~g 204 (520)
-+ ..- +.|+.....| ..++++++.+.+=++.-+++|+
T Consensus 321 V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 321 VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 54 211 2233211011 2356777888888888888773
No 78
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.90 E-value=56 Score=33.93 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=64.1
Q ss_pred HHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHH
Q 046891 113 IDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDY 192 (520)
Q Consensus 113 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f 192 (520)
.+.+|++|.++..|=+=|. |+++..+|..=.++-+++.++|++++|-=++=+..+|.+.-- . .+.++.+..
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~d--~----~~~~yak~k 181 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIAD--N----GSVEYAKVK 181 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcccc--c----ccHHHHhhC
Confidence 5889999999999998876 665445888888999999999999999988888777765321 1 122233333
Q ss_pred HHHHHHHHHHhCC---CcceEEE
Q 046891 193 ADFAEFCFKTFGD---RVKNWYT 212 (520)
Q Consensus 193 ~~ya~~~~~~~g~---~V~~W~t 212 (520)
-+.+-..++.|++ .|+.|=+
T Consensus 182 P~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 182 PHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred hHHHHHHHHHhccCCCCCcEEEE
Confidence 3344446677765 4555543
No 79
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=51.53 E-value=65 Score=35.61 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCcEEEecCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCc-cc---cccCCC
Q 046891 411 ALMYVKERYGNPTVMLSENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAIDDGANVTGYFAWSLL-DN---FEWLLG 486 (520)
Q Consensus 411 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~dGv~V~GY~~WSl~-Dn---~EW~~G 486 (520)
.|..++++|++..|+-||...+.... +....+-.=.|. ..+...+...+..| +.||..|.|+ |. .-|..+
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~-~~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNW-DTSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STT-S-SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCc-ccccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCC
Confidence 46778999998889999987665210 000001111233 23344455556666 6899999984 32 224333
Q ss_pred CcCccceEEecCCCCCccccchHHHHHHHH
Q 046891 487 YTARFGITYVDFDTLQRIPKMSAYWFKQLL 516 (520)
Q Consensus 487 y~~RfGL~~VD~~~~~R~~K~S~~~y~~ii 516 (520)
+.. ..+-||.++.+-+..+.+|.++.+-
T Consensus 393 ~~d--~~iivd~~~~~~~~~p~yY~~gHfS 420 (496)
T PF02055_consen 393 FCD--APIIVDSDTGEFYKQPEYYAMGHFS 420 (496)
T ss_dssp -B----SEEEEGGGTEEEE-HHHHHHHHHH
T ss_pred CCC--ceeEEEcCCCeEEEcHHHHHHHHHh
Confidence 333 3345787655556666777666543
No 80
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=51.11 E-value=45 Score=37.71 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=38.2
Q ss_pred hhhccHHH-----HHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc
Q 046891 105 QYHRYKED-----IDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP 173 (520)
Q Consensus 105 ~y~ry~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P 173 (520)
-|.+|.+| ++..++.|++.+|++.+.+.+ +-....|+.++++|....+++.+=+.|
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p 150 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSP 150 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCC
Confidence 36666666 999999999999999755443 234566777777777766555543334
No 81
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=50.88 E-value=60 Score=33.80 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=65.7
Q ss_pred HHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHH
Q 046891 112 DIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKD 191 (520)
Q Consensus 112 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 191 (520)
+.+.+|++|.++..|=+=|. |+++-.+|..=.++-+++.++|++++|-=++=+..+|.+.-- =.+++..+.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~d------~~~~eyak~ 182 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERISD------NNSAAYAKL 182 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcccc------cccHHHHhh
Confidence 46889999999999998876 664445888888999999999999999999988888655311 123333333
Q ss_pred HHHHHHHHHHHhCC---CcceEEE
Q 046891 192 YADFAEFCFKTFGD---RVKNWYT 212 (520)
Q Consensus 192 f~~ya~~~~~~~g~---~V~~W~t 212 (520)
.-+.+-..++.|++ .|+.|=+
T Consensus 183 kP~~V~~amkefs~~~~gvDVlKv 206 (329)
T PRK04161 183 KPHKVNGAMKVFSDKRFGVDVLKV 206 (329)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEE
Confidence 33445556677775 4555543
No 82
>PRK14705 glycogen branching enzyme; Provisional
Probab=50.58 E-value=70 Score=39.29 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=56.8
Q ss_pred HHH-HHHHHHcCCCeeecCC--------ccc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--CCC
Q 046891 110 KED-IDLMKKLNFDAYRFSI--------SWS-------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY--HYD 171 (520)
Q Consensus 110 ~eD-i~l~~~lG~~~~Rfsi--------~Ws-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~--H~~ 171 (520)
.+. |+-+|+||++++-+.- +|- .+.|.- |. .+=++.+|++|+++||.+|+.+- |+.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry-Gt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF-GH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 345 6889999999986542 341 111111 33 23488999999999999999754 542
Q ss_pred CcHHHHHhh----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 046891 172 MPLALHERY----------------GG-------LLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 172 ~P~~l~~~~----------------gg-------w~~~~~~~~f~~ya~~~~~~~g 204 (520)
.=.|....+ .. +.++++++.+.+=+..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111211111 11 3467888888899999999885
No 83
>PLN02784 alpha-amylase
Probab=50.38 E-value=39 Score=39.64 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=47.5
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCcccccccCCCCC-----CChh--HHHHHHHHHHHHHHcCCeeEEE--ecC
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGR-----VNWK--GVAYYNRLIDYMLEQGITPYAN--LYH 169 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~-----~n~~--gl~~y~~~i~~l~~~gi~p~vt--L~H 169 (520)
.+|....+.++-+++||++++=++-.-.-..+.|=.. +|.. ..+=++.+|+.|+++||++|+. ++|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 4788899999999999999998776544443333111 1111 2345899999999999999986 456
No 84
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=50.24 E-value=24 Score=39.27 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=39.4
Q ss_pred hhccHHHHHHHHHcCCCeeecCCccc--------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFSISWS--------------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfsi~Ws--------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
+.-..+-++-+++||+++.=++--.. +|.|.- | ..+=++++|++++++||++|+.+-
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-G-----t~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-G-----TIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34456678999999999986653221 222221 2 234589999999999999998653
No 85
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=49.54 E-value=17 Score=27.39 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=23.9
Q ss_pred cchhhHHHHHHHHHHHhhccccceecccccccccc
Q 046891 2 KKKAYAVRAFVVFLVCNFAHSAKIACIEGYDTENA 36 (520)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (520)
||.|.-+-.|+|=|++.||.++ ++.|.+++
T Consensus 22 KkrAQRifiFiLElLL~FC~Ge-----dsvdGK~k 51 (62)
T PF01736_consen 22 KKRAQRIFIFILELLLEFCRGE-----DSVDGKNK 51 (62)
T ss_pred hHHHHHHHHHHHHHHHHHhcCC-----cccccccc
Confidence 5666667778888999999998 67888765
No 86
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=49.26 E-value=8.6 Score=31.78 Aligned_cols=19 Identities=37% Similarity=0.774 Sum_probs=13.9
Q ss_pred HHHHhCC--CcceEEEecC-cc
Q 046891 199 CFKTFGD--RVKNWYTFNE-PR 217 (520)
Q Consensus 199 ~~~~~g~--~V~~W~t~NE-p~ 217 (520)
++.+||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 7999999999 66
No 87
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=48.58 E-value=32 Score=37.68 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.4
Q ss_pred hhhccHHH-----HHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc
Q 046891 105 QYHRYKED-----IDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP 173 (520)
Q Consensus 105 ~y~ry~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P 173 (520)
.|.+|.+| ++++++.|++.+|..-.. |+ ++-....|+.+++.|....+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l-----------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL-----------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC-----------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 47788889 999999999999987532 21 2445688889999999988888887766
No 88
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=48.47 E-value=33 Score=39.40 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHcCCCeeec----CCcccccccCC-C---------------CC--CCh---hHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 113 IDLMKKLNFDAYRF----SISWSRIFPQG-A---------------GR--VNW---KGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 113 i~l~~~lG~~~~Rf----si~Wsri~P~~-~---------------g~--~n~---~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
|+-+|+|||+++.+ ++.+.+..++. . |. .+. ..+.=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999983 44444443321 1 11 122 246669999999999999999865
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=48.16 E-value=33 Score=39.49 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=42.3
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccc-----------cC-C-CC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEE
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIF-----------PQ-G-AG-------RVNW--KGVAYYNRLIDYMLEQGITPYAN 166 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~-----------P~-~-~g-------~~n~--~gl~~y~~~i~~l~~~gi~p~vt 166 (520)
..+-++-+++||++++=++--...+. |. . .| .+|. -..+=+++||++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 56668899999999998875544331 10 0 01 1222 13455899999999999999996
Q ss_pred e--cCCC
Q 046891 167 L--YHYD 171 (520)
Q Consensus 167 L--~H~~ 171 (520)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 5 4644
No 90
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.29 E-value=29 Score=34.99 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecC
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYH 169 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H 169 (520)
.+|++.+.+.|++.+|+.++=|...-... +.=-++.++...++|..+++.|+++.+++-.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 77999999999999999886544332211 3223567889999999999999999999853
No 91
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=47.27 E-value=47 Score=33.93 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=61.8
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecC-CCCcHHHHHhhCCCCCh
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYH-YDMPLALHERYGGLLGR 186 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 186 (520)
-.+|+++..+.|++.+++.++=|...-... +.=-++.++-..++|+.++++|+++.+++.. |..|. .|..
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~-- 152 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV-- 152 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC--
Confidence 489999999999999999986554432211 3344567888999999999999999887774 55552 3433
Q ss_pred hhHHHHHHHHHHHHH
Q 046891 187 QVVKDYADFAEFCFK 201 (520)
Q Consensus 187 ~~~~~f~~ya~~~~~ 201 (520)
..+.+.++++.+.+
T Consensus 153 -~~~~~~~~~~~~~~ 166 (287)
T PRK05692 153 -PPEAVADVAERLFA 166 (287)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35777888888765
No 92
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=47.18 E-value=66 Score=32.40 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhH
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVV 189 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 189 (520)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+... -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------CCH
Confidence 6899999999999999987432 3466789999999999999999876321 234
Q ss_pred HHHHHHHHHHHHHhC
Q 046891 190 KDYADFAEFCFKTFG 204 (520)
Q Consensus 190 ~~f~~ya~~~~~~~g 204 (520)
+.+.++++.+.+ .|
T Consensus 138 ~~~~~~~~~~~~-~g 151 (266)
T cd07944 138 EELLELLELVNE-IK 151 (266)
T ss_pred HHHHHHHHHHHh-CC
Confidence 667777877654 44
No 93
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=46.27 E-value=92 Score=32.53 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCeeEEEecCC-CCcHHHHH--hhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccccccc
Q 046891 150 NRLIDYMLEQGITPYANLYHY-DMPLALHE--RYGGLLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRVIAAL 222 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~--~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~ 222 (520)
++++++|++.|++.++.+.-+ ..-..+.. .+--|+||+.++.|.+..+.+.+ .|= .-+|+=.|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 589999999999876655321 10000000 01238899999998877655443 232 2478889999977543
No 94
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=46.26 E-value=55 Score=38.66 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.3
Q ss_pred hhccHHHHHHHHHcCCCeeecCCc---------------ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--c
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFSIS---------------WSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL--Y 168 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfsi~---------------Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL--~ 168 (520)
+....+-+.-+++||+++.=+|-- +.+|.|.- | +.+=+++++++++++||++|+.+ +
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 445788899999999998865543 33444443 3 23558999999999999999865 4
Q ss_pred CC
Q 046891 169 HY 170 (520)
Q Consensus 169 H~ 170 (520)
|-
T Consensus 93 H~ 94 (879)
T PRK14511 93 HM 94 (879)
T ss_pred cc
Confidence 54
No 95
>PHA02621 agnoprotein; Provisional
Probab=46.18 E-value=21 Score=27.36 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.5
Q ss_pred cchhhHHHHHHHHHHHhhccccceecccccccccccc
Q 046891 2 KKKAYAVRAFVVFLVCNFAHSAKIACIEGYDTENARI 38 (520)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (520)
||.|.-+-.|+|=|++.||.++ ++.|.++.+.
T Consensus 22 kkraqri~if~le~ll~fc~ge-----dsvdgk~k~~ 53 (68)
T PHA02621 22 KKRAQRIFIFILELLLDFCRGE-----DSVDGKKKKD 53 (68)
T ss_pred hHHHHHHHHHHHHHHHHHhcCc-----ccccccccCC
Confidence 5677777788888999999998 7888887643
No 96
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=45.44 E-value=54 Score=34.61 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhh
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQV 188 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 188 (520)
.+|++.+.+.|++.+|+.++-|.+.-... +.=-.+.++-..+.|+.++++|+++.++... .+..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~~--- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRAD--- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCCC---
Confidence 89999999999999999998775433321 2234567888999999999999998766432 23333
Q ss_pred HHHHHHHHHHHHHHhC
Q 046891 189 VKDYADFAEFCFKTFG 204 (520)
Q Consensus 189 ~~~f~~ya~~~~~~~g 204 (520)
++.+.++++.+.+ .|
T Consensus 141 ~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 PDFLVELAEVAAE-AG 155 (365)
T ss_pred HHHHHHHHHHHHH-cC
Confidence 5666777776554 44
No 97
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.95 E-value=55 Score=34.46 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=62.9
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecC-CCCcHHHHHhhCCCCCh
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYH-YDMPLALHERYGGLLGR 186 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 186 (520)
=.+|++.+.+.|++.+.+.++=|...-... +.=-++.++-+.++|+.++++|+++.+++.. |..|. .|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC--
Confidence 589999999999999999986665544432 4445778899999999999999999888764 55552 3322
Q ss_pred hhHHHHHHHHHHHHH
Q 046891 187 QVVKDYADFAEFCFK 201 (520)
Q Consensus 187 ~~~~~f~~ya~~~~~ 201 (520)
.++.+.++++.+.+
T Consensus 195 -~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 -PPSKVAYVAKELYD 208 (347)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35667777777654
No 98
>PRK10785 maltodextrin glucosidase; Provisional
Probab=44.39 E-value=38 Score=38.29 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHcCCCeeecCCcc-------------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISW-------------SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~W-------------sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
-..+-++-+++||+++.=++--. -+|.|.= | ..+=+++||++|+++||++|+.+-
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34666889999999998776422 2222221 2 234588999999999999998654
No 99
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=44.16 E-value=64 Score=34.58 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccc-----------cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec--------
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSR-----------IFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY-------- 168 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsr-----------i~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~-------- 168 (520)
...+-++.++++|++.+-+.--|.. ..|+. .++ +.| ...+++.+++.|+++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4566788899999999888889954 33333 222 124 56899999999999755331
Q ss_pred --CCCCcHHHHHhhC------------CCCChhhHHHHHHHHHHHHHHhC
Q 046891 169 --HYDMPLALHERYG------------GLLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 169 --H~~~P~~l~~~~g------------gw~~~~~~~~f~~ya~~~~~~~g 204 (520)
.-..|.|+...-+ -..+|+++++..+-...+++.+|
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1246888753201 15678899988888887778776
No 100
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.27 E-value=80 Score=34.47 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP 173 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P 173 (520)
++|++.+.+.|++.+|+.++-+.+. -....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 6677999999999999998655441 25568999999999988888776656
No 101
>PRK03705 glycogen debranching enzyme; Provisional
Probab=42.90 E-value=52 Score=37.73 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHHHHcCCCeeecCCc-----------------c-------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 113 IDLMKKLNFDAYRFSIS-----------------W-------SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 113 i~l~~~lG~~~~Rfsi~-----------------W-------sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
|+-+|+||++++-+.-- | -.+.|.- |.-....++=+++||++|+++||++|+.+-
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 88999999999865431 1 1222221 221112355689999999999999998653
No 102
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=42.72 E-value=89 Score=32.92 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeeecCC-cc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChh
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SW-SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQ 187 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~W-sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 187 (520)
++.+++|+++|++.+-+++ += .++...-....+. +-..+.|+.+++.|+..+-.-.=+++|. +
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPg------------q 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNE---EDVYEAIANAKKAGFDNISIDLIYALPG------------Q 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCC------------C
Confidence 7889999999999877777 22 2333332122333 5577899999999997543333456663 2
Q ss_pred hHHHHHHHHHHHHHHhC-CCcceEEEecCccccc
Q 046891 188 VVKDYADFAEFCFKTFG-DRVKNWYTFNEPRVIA 220 (520)
Q Consensus 188 ~~~~f~~ya~~~~~~~g-~~V~~W~t~NEp~~~~ 220 (520)
+.+.|.+=.+.+.+ ++ +.|......-+|.+..
T Consensus 165 t~~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 TIEDFKESLAKALA-LDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred CHHHHHHHHHHHHc-cCCCEEeeeceeecCCChh
Confidence 33444444454433 33 3454444445666443
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=42.65 E-value=70 Score=33.99 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
++|++.+.+.|++.++++++-|.+.-... +.--++.++-..+.|+.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88999999999999999997766533321 33356778889999999999999988874
No 104
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.27 E-value=1.2e+02 Score=30.66 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=49.5
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhh
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQV 188 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 188 (520)
-++|+++..+.|++.+|+++.-+. ++--.+.++.++++|+++.+++.--+- .+-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~~------------~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTGS------------PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecCC------------CCCC
Confidence 488999999999999999886544 355678999999999998877632111 2234
Q ss_pred HHHHHHHHHHHHH
Q 046891 189 VKDYADFAEFCFK 201 (520)
Q Consensus 189 ~~~f~~ya~~~~~ 201 (520)
.+.+.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~ 160 (275)
T cd07937 148 LEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHHHHH
Confidence 5666777777654
No 105
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=42.20 E-value=88 Score=33.43 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=39.8
Q ss_pred hccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 107 HRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
..|++||++++++||+.|=+.|- .. ...+. +....+.+.+.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999998885 11 23444 556688899999998877776
No 106
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=41.62 E-value=17 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=32.7
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCC
Q 046891 131 SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYD 171 (520)
Q Consensus 131 sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~ 171 (520)
+++.|.. +.=-.++++...+++..|.++|| |.+.|++-+
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 6788887 66778999999999999999999 777776643
No 107
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=41.19 E-value=1.4e+02 Score=31.26 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCeeEEEecCCCCc--------HHHHH--h-----------h-----------CCCCChhhHHHHHHHHH
Q 046891 150 NRLIDYMLEQGITPYANLYHYDMP--------LALHE--R-----------Y-----------GGLLGRQVVKDYADFAE 197 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~~~P--------~~l~~--~-----------~-----------ggw~~~~~~~~f~~ya~ 197 (520)
++||+.|++.|++.++.+.-+-.+ .+-+. + | --++||+.++.|....+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999988877654333 22110 0 0 12889999999988777
Q ss_pred HHHHHhCCCcceEEEecCccc
Q 046891 198 FCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 198 ~~~~~~g~~V~~W~t~NEp~~ 218 (520)
.++..+|- --+|+=.|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 76665443 356777899863
No 108
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=40.97 E-value=1.5e+02 Score=31.67 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=58.9
Q ss_pred cCCchhhccHHHHHHHHHc-CCCeeecCC--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecCCCCcHHH
Q 046891 101 VTVDQYHRYKEDIDLMKKL-NFDAYRFSI--SWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPY-ANLYHYDMPLAL 176 (520)
Q Consensus 101 ~a~d~y~ry~eDi~l~~~l-G~~~~Rfsi--~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l 176 (520)
.+.+-.++ .+|++.+.+| ++. .++++ .|+.+ ..+.++.+.++++||+.. ++...|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~d~~-------------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALHIPWDRV-------------EDYEELARYAEELGLKIGAINPNLFQDDDY- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-CceeeccCCccc-------------cCHHHHHHHHHHcCCceeeeeCCccCCccc-
Confidence 34444444 7888888888 555 66666 44111 236788888999999987 78877766654
Q ss_pred HHhhCCCCCh--hhHHHHHHHHHHHH---HHhCCC
Q 046891 177 HERYGGLLGR--QVVKDYADFAEFCF---KTFGDR 206 (520)
Q Consensus 177 ~~~~ggw~~~--~~~~~f~~ya~~~~---~~~g~~ 206 (520)
++|.++|| ++++.-.++++.|. +.+|..
T Consensus 99 --~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 99 --KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34788886 56666666665554 567763
No 109
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=40.21 E-value=1.3e+02 Score=31.30 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCeeEEEecCCCC-----cHHHHHh------------------------hCCCCChhhHHHHHHHHHHHH
Q 046891 150 NRLIDYMLEQGITPYANLYHYDM-----PLALHER------------------------YGGLLGRQVVKDYADFAEFCF 200 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~~ 200 (520)
+.||+.|+++|++.++.+.-+-. |..-+-. +--++||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999998887765422 2221111 012889999999999988776
Q ss_pred HHhCC-CcceEEEecCccccc
Q 046891 201 KTFGD-RVKNWYTFNEPRVIA 220 (520)
Q Consensus 201 ~~~g~-~V~~W~t~NEp~~~~ 220 (520)
...+. -+-.|+=.|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 54332 356789999998653
No 110
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=40.05 E-value=37 Score=41.76 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=40.2
Q ss_pred chhhccH--HHHHHHHHcCCCeeecCCcccc------------------------cccCCCCCCChhHHHHHHHHHHHHH
Q 046891 104 DQYHRYK--EDIDLMKKLNFDAYRFSISWSR------------------------IFPQGAGRVNWKGVAYYNRLIDYML 157 (520)
Q Consensus 104 d~y~ry~--eDi~l~~~lG~~~~Rfsi~Wsr------------------------i~P~~~g~~n~~gl~~y~~~i~~l~ 157 (520)
.-|.... +.|+-+|+||++++=+.--... +.|.- |. ..++=+++||++|+
T Consensus 182 Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~y-g~---~~~~efk~lV~~~H 257 (1221)
T PRK14510 182 GTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRL-AP---GGEEEFAQAIKEAQ 257 (1221)
T ss_pred cHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhh-cc---CcHHHHHHHHHHHH
Confidence 3455544 6688999999999876542221 11111 10 14455899999999
Q ss_pred HcCCeeEEEe
Q 046891 158 EQGITPYANL 167 (520)
Q Consensus 158 ~~gi~p~vtL 167 (520)
++||++|+.+
T Consensus 258 ~~GI~VILDv 267 (1221)
T PRK14510 258 SAGIAVILDV 267 (1221)
T ss_pred HCCCEEEEEE
Confidence 9999999864
No 111
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.85 E-value=1.1e+02 Score=31.46 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=24.6
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCcc-eEEEecCcccc
Q 046891 183 LLGRQVVKDYADFAEFCFKTFGDRVK-NWYTFNEPRVI 219 (520)
Q Consensus 183 w~~~~~~~~f~~ya~~~~~~~g~~V~-~W~t~NEp~~~ 219 (520)
++||+.++.|.+..+.+ +..-|+ +|+=+|||...
T Consensus 134 ftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 134 WFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 77999999998877765 333454 57778999644
No 112
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.68 E-value=1.2e+02 Score=31.18 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCC-eeecCC-cc-ccccc-C-CCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCC
Q 046891 110 KEDIDLMKKLNFD-AYRFSI-SW-SRIFP-Q-GAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLL 184 (520)
Q Consensus 110 ~eDi~l~~~lG~~-~~Rfsi-~W-sri~P-~-~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 184 (520)
+|.+++|+++|++ .+=+++ +- .++.- . +.| .+. +-+.+.++.++++||.+.+.+. +.+|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STF---EDFIRAAELARKYGAGVKAYLL-FKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCC--------CC
Confidence 7889999999998 576766 22 22221 1 101 233 5578999999999998666553 34451 22
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEEecCccccccccccCCCCCC
Q 046891 185 GRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRVIAALGFDSGINPP 231 (520)
Q Consensus 185 ~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~gy~~G~~~P 231 (520)
..+.++.+.+.++.+.+ +++.|....+.=+|++....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23677878888887764 45778877776677764444455666655
No 113
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=39.10 E-value=52 Score=38.61 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred hhccHHHHHHHHHcCCCeeecCCccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--c
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFSISWS---------------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL--Y 168 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL--~ 168 (520)
+....+-+.-+++||++++=+|--+. +|.|.- | +.+=+++++++|+++||..|+.+ +
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34468889999999999987665442 333332 2 34558899999999999999864 5
Q ss_pred CCC
Q 046891 169 HYD 171 (520)
Q Consensus 169 H~~ 171 (520)
|..
T Consensus 89 H~a 91 (825)
T TIGR02401 89 HMA 91 (825)
T ss_pred ccc
Confidence 654
No 114
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.57 E-value=1.2e+02 Score=30.38 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhH
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVV 189 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 189 (520)
.+|++.+.+.|++.+|+.++-+.+. -..+.++.+++.|+++.+++... +..+ +
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~~~~-----------~~~~---~ 140 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFLMMS-----------HMAS---P 140 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEEEec-----------cCCC---H
Confidence 6999999999999999888766432 24678999999999999998542 2233 3
Q ss_pred HHHHHHHHHHH
Q 046891 190 KDYADFAEFCF 200 (520)
Q Consensus 190 ~~f~~ya~~~~ 200 (520)
+.+.+.++.+.
T Consensus 141 ~~~~~~~~~~~ 151 (263)
T cd07943 141 EELAEQAKLME 151 (263)
T ss_pred HHHHHHHHHHH
Confidence 55666777654
No 115
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=38.44 E-value=1.6e+02 Score=30.44 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCeeEEEecCC---CCcHHHHHh-----------------------hCCCCChhhHHHHHHHHHHHHHH
Q 046891 149 YNRLIDYMLEQGITPYANLYHY---DMPLALHER-----------------------YGGLLGRQVVKDYADFAEFCFKT 202 (520)
Q Consensus 149 y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~-----------------------~ggw~~~~~~~~f~~ya~~~~~~ 202 (520)
-+++|+.|+++|++.++.+.-+ +.+.+-+-. +--|+||+.++.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 4689999999999988866432 122111100 01278899999887655544433
Q ss_pred hCCCcceEEEecCcccc
Q 046891 203 FGDRVKNWYTFNEPRVI 219 (520)
Q Consensus 203 ~g~~V~~W~t~NEp~~~ 219 (520)
.|= --+|+=+|||...
T Consensus 148 ~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 148 KGV-DAWWLDAAEPEYS 163 (319)
T ss_pred CCC-cEEEecCCCCCcc
Confidence 332 3467779999854
No 116
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=37.87 E-value=96 Score=33.72 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCeeecCC-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCC-eeEEEecCCCCcHHHHHhhCCCCCh
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SWS-RIFPQGAGRVNWKGVAYYNRLIDYMLEQGI-TPYANLYHYDMPLALHERYGGLLGR 186 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi-~p~vtL~H~~~P~~l~~~~ggw~~~ 186 (520)
+|.+++|+++|+|-+-+++ |-+ .+...- |+..- .+-..+.|+.+++.|. .+.+.| =+++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~~--~~~~~~~i~~l~~~g~~~v~~Dl-I~GlPg------------ 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKDD--REEVLARLEELVARDRAAVVCDL-IFGLPG------------ 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCCC--HHHHHHHHHHHHhCCCCcEEEEE-EeeCCC------------
Confidence 7889999999999888888 432 222221 32211 1445678999999994 444444 456662
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEEecCccccccccccCCCCC
Q 046891 187 QVVKDYADFAEFCFKTFGDRVKNWYTFNEPRVIAALGFDSGINP 230 (520)
Q Consensus 187 ~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~gy~~G~~~ 230 (520)
++.+.|.+=.+.+.+-=-+.|..+...-||++.....+..|..+
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 23344444455544433357888888888876443333344443
No 117
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.62 E-value=61 Score=35.44 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=73.4
Q ss_pred hhccHHHHHHHHHcCCCeeecC------------------------------CcccccccCCC--CCCChh----HHHHH
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFS------------------------------ISWSRIFPQGA--GRVNWK----GVAYY 149 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfs------------------------------i~Wsri~P~~~--g~~n~~----gl~~y 149 (520)
+.+|+..|+-|+=+|+|..=.- +.|.|.---.. |+...+ -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6789999999999999965322 13444322211 332221 11223
Q ss_pred HHHHHHHHHcCCeeEEEecCCCCcHHHHHhh--------CC---------------CCChhhHHHHHHHHHHHHHHhCC-
Q 046891 150 NRLIDYMLEQGITPYANLYHYDMPLALHERY--------GG---------------LLGRQVVKDYADFAEFCFKTFGD- 205 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg---------------w~~~~~~~~f~~ya~~~~~~~g~- 205 (520)
+++|+.+++-||+|++--+---.|..|..-+ +. ..+|-+.+-=..|.+...+.||.
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999999888999988653 11 23355556666778888999996
Q ss_pred -CcceEEEecCc
Q 046891 206 -RVKNWYTFNEP 216 (520)
Q Consensus 206 -~V~~W~t~NEp 216 (520)
.+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 23333478884
No 118
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=37.59 E-value=99 Score=30.38 Aligned_cols=74 Identities=15% Similarity=0.316 Sum_probs=48.9
Q ss_pred hccHHHHHHHHHcCCCeeec----------------------CCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE
Q 046891 107 HRYKEDIDLMKKLNFDAYRF----------------------SISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPY 164 (520)
Q Consensus 107 ~ry~eDi~l~~~lG~~~~Rf----------------------si~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~ 164 (520)
-.-+.=|+||++||.++..| ++ | +||.| .+|. +.+.+++..+++.|++-+
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GIdl---~Nf~~I~~i~ldaGv~kv 206 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GIDL---DNFEEIVQIALDAGVEKV 206 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--CccH---HhHHHHHHHHHHcCCCee
Confidence 34567799999999998875 33 3 57775 4776 778999999999999854
Q ss_pred EEecCCCCcHHHHHhhCCCCChhhHHHH
Q 046891 165 ANLYHYDMPLALHERYGGLLGRQVVKDY 192 (520)
Q Consensus 165 vtL~H~~~P~~l~~~~ggw~~~~~~~~f 192 (520)
+ .|- =--+.|+-.|-+.++-+...
T Consensus 207 i--PHI--YssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 207 I--PHV--YSSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred c--ccc--ceeccccccCCCCHHHHHHH
Confidence 3 230 00122333566676655443
No 119
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=36.45 E-value=1.4e+02 Score=30.51 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=56.5
Q ss_pred HHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCC----cHHHHHhhCCCCChhh
Q 046891 113 IDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDM----PLALHERYGGLLGRQV 188 (520)
Q Consensus 113 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~~~~ggw~~~~~ 188 (520)
.+.+++-+-+.--++..|-.|-|+|. +.. ....++++.++++|+++++++..++- +.-+.. -..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~--~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGT--LTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCC--CCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 56667766666677889999988763 322 12358999999999999999987651 111111 1346677
Q ss_pred HHHHHHHHHHHHHHhC
Q 046891 189 VKDYADFAEFCFKTFG 204 (520)
Q Consensus 189 ~~~f~~ya~~~~~~~g 204 (520)
++.|++=+-..++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777776666666664
No 120
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.15 E-value=1.4e+02 Score=30.58 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=68.0
Q ss_pred cHHHHHHHHHcCCC--eeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCC---cHHHH------
Q 046891 109 YKEDIDLMKKLNFD--AYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDM---PLALH------ 177 (520)
Q Consensus 109 y~eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~------ 177 (520)
..+-++.+++.|+. .+=+.+.|..-. ++=.+|.+-.---.++|+.|+++|+++++.+.=+-. |..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 46667888999964 666666774321 111233332233579999999999998887653322 21111
Q ss_pred ---HhhC----------C------CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCcc
Q 046891 178 ---ERYG----------G------LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPR 217 (520)
Q Consensus 178 ---~~~g----------g------w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~ 217 (520)
++-| | ++||+.++.+.+..+.+....|= --+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 1001 1 88999999999999888877643 34566799996
No 121
>PLN02389 biotin synthase
Probab=35.64 E-value=97 Score=33.02 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccc-cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSR-IFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsr-i~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
.-+|.++.||++|++.|-.+++=++ ++|.-...-++ +..-+.|+.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~---e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSY---DDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCH---HHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885233 55543122233 667899999999999876654
No 122
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=35.50 E-value=4.7e+02 Score=28.24 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCeeecCC--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecCCCCcHH--HHHhhCCCC
Q 046891 110 KEDIDLMKKLNFDAYRFSI--SWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPY-ANLYHYDMPLA--LHERYGGLL 184 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi--~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~ggw~ 184 (520)
.+|++.+.+|.--..|+++ .|.. +|.+.|+ +.++++||..- +...-|..|+- -.-++|..+
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 7889999988877777776 7822 3555544 88999999987 76666777732 112357888
Q ss_pred Ch--hhHHHHHHHHHHH---HHHhCCC-cceEE
Q 046891 185 GR--QVVKDYADFAEFC---FKTFGDR-VKNWY 211 (520)
Q Consensus 185 ~~--~~~~~f~~ya~~~---~~~~g~~-V~~W~ 211 (520)
|| ++++.-.+-+..| .+..|.. |..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 75 5666666665555 4566653 44443
No 123
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=35.42 E-value=96 Score=32.44 Aligned_cols=109 Identities=23% Similarity=0.422 Sum_probs=57.2
Q ss_pred hhccHHHHHHHHHcCCCeee---------------cCC---------------cccccccCCC--CCCCh----hHHHHH
Q 046891 106 YHRYKEDIDLMKKLNFDAYR---------------FSI---------------SWSRIFPQGA--GRVNW----KGVAYY 149 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~R---------------fsi---------------~Wsri~P~~~--g~~n~----~gl~~y 149 (520)
|+||++.|+-|+=-|||..= |++ .|.|.---.. |+... +=.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999998988432 221 3444322211 33221 112344
Q ss_pred HHHHHHHHHcCCeeEEEecCCCCcHHHHHhhC-----------C-----CCChhhHHHHHHHHHHH----HHHhCCCcce
Q 046891 150 NRLIDYMLEQGITPYANLYHYDMPLALHERYG-----------G-----LLGRQVVKDYADFAEFC----FKTFGDRVKN 209 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g-----------g-----w~~~~~~~~f~~ya~~~----~~~~g~~V~~ 209 (520)
+++++.+++.||+|++-=+---.|..|.+++. | |++|. -..|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~-dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPT-DPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS---HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCC-CchHHHHHHHHHHHHHHhcC-CCce
Confidence 79999999999999999998889999988752 1 33332 24566665554 45677 3333
Q ss_pred EE--EecCc
Q 046891 210 WY--TFNEP 216 (520)
Q Consensus 210 W~--t~NEp 216 (520)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 33 47773
No 124
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.83 E-value=49 Score=33.60 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=50.5
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhh
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQV 188 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 188 (520)
.++=+++++++||..+.+..- +.-+++.++||+++++.+.+++| +|.+|--..|-=++..|.....+|-
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~Eg 176 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTREG 176 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE--
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHHH
Confidence 366689999999999998763 33589999999999999999999 7788777788777766655555554
Q ss_pred HH
Q 046891 189 VK 190 (520)
Q Consensus 189 ~~ 190 (520)
+.
T Consensus 177 Vr 178 (273)
T PF10566_consen 177 VR 178 (273)
T ss_dssp S-
T ss_pred hh
Confidence 43
No 125
>PLN02960 alpha-amylase
Probab=34.82 E-value=67 Score=37.92 Aligned_cols=95 Identities=14% Similarity=0.250 Sum_probs=59.7
Q ss_pred chhhccHHH-HHHHHHcCCCeeecCCc--------cc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 104 DQYHRYKED-IDLMKKLNFDAYRFSIS--------WS-------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 104 d~y~ry~eD-i~l~~~lG~~~~Rfsi~--------Ws-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
..|.-..+. |.-+++||++++-+.-- |. .+.|.- |. .+=++.+|++|.++||.+|+.+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 456666554 89999999999876431 21 111111 32 2348899999999999999987
Q ss_pred --cCCCC--c--HHHHH----------------hhC----CCCChhhHHHHHHHHHHHHHHhC
Q 046891 168 --YHYDM--P--LALHE----------------RYG----GLLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 168 --~H~~~--P--~~l~~----------------~~g----gw~~~~~~~~f~~ya~~~~~~~g 204 (520)
.|+.. + .+..+ .+| ...++++++.+..=|+.-+++|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35421 1 11100 011 13357788888888888888884
No 126
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.24 E-value=1.1e+02 Score=30.85 Aligned_cols=80 Identities=8% Similarity=0.017 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCeeecCCcccccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhH
Q 046891 111 EDIDLMKKLNFDAYRFSISWSRIFPQG-AGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVV 189 (520)
Q Consensus 111 eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 189 (520)
.+++++.+.|++.+|+.++=|...-.. .|.-.++.++...+.++.+++.|+++.++.-+| .+ +. +...
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~~ 150 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KANP 150 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCCH
Confidence 689999999999999987644432221 133346678889999999999999998877666 11 11 1234
Q ss_pred HHHHHHHHHHHH
Q 046891 190 KDYADFAEFCFK 201 (520)
Q Consensus 190 ~~f~~ya~~~~~ 201 (520)
+.+.++++.+.+
T Consensus 151 ~~~~~~~~~~~~ 162 (273)
T cd07941 151 EYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHh
Confidence 556777777654
No 127
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=33.81 E-value=1.3e+02 Score=33.96 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc----HHHHHh-----
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP----LALHER----- 179 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~----- 179 (520)
.++|++++.+.|++.+|+..+.+.+ +-....|+.++++|+...+++.+-+.| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3556899999999999998766543 235677888899999888887766555 222111
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 046891 180 -----------YGGLLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 180 -----------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 218 (520)
-.|...|.. ..+..+.+-++++ ..-...+-|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 145666544 3444555556665 3345677777653
No 128
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=33.72 E-value=1.2e+02 Score=29.91 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046891 146 VAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 146 l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 204 (520)
++...+.|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3557789999999999999999766554221 112455556666666666666664
No 129
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.53 E-value=1.2e+02 Score=30.64 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecC-CCCcHHHHHhhCCCCChh
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYH-YDMPLALHERYGGLLGRQ 187 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~~ 187 (520)
.+|++.+.+.|++.+++.++=|...-... +.--.+.++...+.++.++++|+++.+++.. |+.|. ++-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC---
Confidence 78999999999999999986554422211 3333667888999999999999999988873 66662 3322
Q ss_pred hHHHHHHHHHHHHH
Q 046891 188 VVKDYADFAEFCFK 201 (520)
Q Consensus 188 ~~~~f~~ya~~~~~ 201 (520)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 45667777777654
No 130
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=33.26 E-value=1.7e+02 Score=30.68 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=61.8
Q ss_pred cCCchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhh
Q 046891 101 VTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERY 180 (520)
Q Consensus 101 ~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 180 (520)
+|.=||+ |+--+. ..+.|+..+|+. | |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.++|
T Consensus 76 VADIHFd-~~lAl~-a~~~g~dkiRIN-------P---GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ky 141 (346)
T TIGR00612 76 VADIHFD-YRLAAL-AMAKGVAKVRIN-------P---GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKY 141 (346)
T ss_pred EEeeCCC-cHHHHH-HHHhccCeEEEC-------C---CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHc
Confidence 4445554 333332 335577777653 2 33322 36789999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHH
Q 046891 181 GGLLGRQVVKDYADFAEFCF 200 (520)
Q Consensus 181 ggw~~~~~~~~f~~ya~~~~ 200 (520)
|+-+-+..++--.++++.|-
T Consensus 142 g~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 142 GDATAEAMVQSALEEAAILE 161 (346)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 87666677777777777653
No 131
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.26 E-value=83 Score=32.90 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhH
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVV 189 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 189 (520)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|++..+++..-. +..+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCCH
Confidence 689999999999999998765543 1247899999999999999986531 1234
Q ss_pred HHHHHHHHHHHHHhCC
Q 046891 190 KDYADFAEFCFKTFGD 205 (520)
Q Consensus 190 ~~f~~ya~~~~~~~g~ 205 (520)
+.+.+.++.+. .+|-
T Consensus 144 e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 144 EKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHH-hCCC
Confidence 66777777754 4654
No 132
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.15 E-value=1.4e+02 Score=30.16 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=50.8
Q ss_pred CCchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHH
Q 046891 102 TVDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLAL 176 (520)
Q Consensus 102 a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 176 (520)
.++..+...+=.+.+|++|+..+|-+..=+|--|.+--.+ +.+.++.+-+.+.+.||..+-+.++-..+..+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 3456677788888999999999999975577666542112 34556667777899999988887765444444
No 133
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.51 E-value=1e+02 Score=30.53 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=45.1
Q ss_pred CCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046891 127 SISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 127 si~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 204 (520)
.+.|..+.++|.-.... .......+++.++++|++.++++-.+....... -..++..++.|++=+-..+++||
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 34566666654311110 113467889999999999999997766543221 23467777777766666666654
No 134
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=32.05 E-value=61 Score=34.98 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCeeecCC------cccccccCCCCCC--ChhHHHHHHHHHHHHHHcCCeeEEEe--cCCCC-cHHHHH
Q 046891 111 EDIDLMKKLNFDAYRFSI------SWSRIFPQGAGRV--NWKGVAYYNRLIDYMLEQGITPYANL--YHYDM-PLALHE 178 (520)
Q Consensus 111 eDi~l~~~lG~~~~Rfsi------~Wsri~P~~~g~~--n~~gl~~y~~~i~~l~~~gi~p~vtL--~H~~~-P~~l~~ 178 (520)
+-++.+++||+++.=++= ++.+--+..--.+ ..-.++-.+++|++++++||+.++.+ .|-.. -.|+.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~ 111 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKE 111 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHH
Confidence 567899999999984332 1111111110112 23345678999999999999999987 66332 234443
No 135
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=31.25 E-value=1.5e+02 Score=34.63 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCeeecCCc-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecC---CCCcHHH--HHh--------------
Q 046891 120 NFDAYRFSIS-WSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYH---YDMPLAL--HER-------------- 179 (520)
Q Consensus 120 G~~~~Rfsi~-Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l--~~~-------------- 179 (520)
=++++++++. |.+ ..+.=.+|..-.---+.||+.|++.||+-++-+.. -|.|+.= ..+
T Consensus 295 P~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~ 372 (772)
T COG1501 295 PLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQA 372 (772)
T ss_pred cceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeee
Confidence 3568889995 876 21111122211112249999999999998887764 2334321 111
Q ss_pred --------hCCCCChhhHHHHHHHHHHHHHHhCC-C-cceEEEecCccccccc
Q 046891 180 --------YGGLLGRQVVKDYADFAEFCFKTFGD-R-VKNWYTFNEPRVIAAL 222 (520)
Q Consensus 180 --------~ggw~~~~~~~~f~~ya~~~~~~~g~-~-V~~W~t~NEp~~~~~~ 222 (520)
+--++||+.+++|.+ ...+.+-| . .-+|.=+|||.+....
T Consensus 373 ~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 373 DFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred cccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCcccccc
Confidence 012889999999997 33333333 2 4678889999876543
No 136
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=31.12 E-value=95 Score=32.48 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhH
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVV 189 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 189 (520)
..-|++|.+.|++-.=.|+ +.|++ .+...++.++++++.+.+.|+++||.. -|+-|.. -||.-+ .+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S~~-~l 84 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNISLD-NL 84 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCChH-HH
Confidence 3447888899988665554 34554 234578899999999999999999998 6777765 354433 34
Q ss_pred HHHHHH
Q 046891 190 KDYADF 195 (520)
Q Consensus 190 ~~f~~y 195 (520)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 444443
No 137
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.97 E-value=1.4e+02 Score=31.14 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|++..+++.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999988754433 2246889999999999988874
No 138
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=30.90 E-value=2.7e+02 Score=28.70 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCeeEEEecCCCC-----cHHHHHh------------------------hCCCCChhhHHHHHHHHHHHH
Q 046891 150 NRLIDYMLEQGITPYANLYHYDM-----PLALHER------------------------YGGLLGRQVVKDYADFAEFCF 200 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~~ 200 (520)
++||+.|+++|++.++.+.-+-. |...+-. +--|+||+.++.|.+..+.+.
T Consensus 67 ~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 67 KKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred HHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 58999999999997776643321 2221110 012799999999988887766
Q ss_pred HHhCCCcceEEEecCccc
Q 046891 201 KTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 201 ~~~g~~V~~W~t~NEp~~ 218 (520)
...|- .-+|+=+|||..
T Consensus 147 ~~~gv-dg~w~D~~Ep~~ 163 (317)
T cd06600 147 NSQGV-DGIWLDMNEPSD 163 (317)
T ss_pred hcCCC-ceEEeeCCCCcc
Confidence 54433 347777999863
No 139
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=30.70 E-value=1.1e+02 Score=38.74 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=44.3
Q ss_pred hhccHHHHHHHHHcCCCeeecCCccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--c
Q 046891 106 YHRYKEDIDLMKKLNFDAYRFSISWS---------------RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL--Y 168 (520)
Q Consensus 106 y~ry~eDi~l~~~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL--~ 168 (520)
+....+-+.-+++||++++=+|--+. +|.|.- | +.+=+++++++|+++||..|+.+ +
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 45577888999999999986665443 333332 2 34558999999999999999865 4
Q ss_pred CCC
Q 046891 169 HYD 171 (520)
Q Consensus 169 H~~ 171 (520)
|..
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 754
No 140
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.69 E-value=1.9e+02 Score=30.13 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHH
Q 046891 112 DIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKD 191 (520)
Q Consensus 112 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 191 (520)
+.+.+|++|.++..|=+=|. |++.-.+|..=.++-+++.++|++++|-=++=+..+|.+.- +. ++ .++.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~--~~-~~---~~yak~ 181 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIP--DN-GS---VEFAKV 181 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCC--CC-Cc---HHHHHh
Confidence 36889999999999988775 44334588888899999999999999999998888876641 11 22 222222
Q ss_pred HHHHHHHHHHHhCC---CcceEEE
Q 046891 192 YADFAEFCFKTFGD---RVKNWYT 212 (520)
Q Consensus 192 f~~ya~~~~~~~g~---~V~~W~t 212 (520)
--+.+-..++.|++ .|+.|=+
T Consensus 182 kP~~V~~a~kefs~~~~gvDVlKv 205 (325)
T TIGR01232 182 KPRKVNEAMKLFSEPRFNVDVLKV 205 (325)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEE
Confidence 23344455666766 4555543
No 141
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.69 E-value=1.7e+02 Score=26.26 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCCc---HHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCC
Q 046891 149 YNRLIDYMLEQGITPYANLYHYDMP---LALHERYGGLLGRQVVKDYADFAEFCFKTFGDR 206 (520)
Q Consensus 149 y~~~i~~l~~~gi~p~vtL~H~~~P---~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~ 206 (520)
+.-+|+.|++.|++|++.+ .| .|.. |-| .+++.++.|.+=.+..++++|=.
T Consensus 38 l~l~L~~~k~~g~~~lfVi----~PvNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVI----QPVNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE--------HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHcCCceEEEe----cCCcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 5789999999999999998 45 3432 345 45677777777788888888764
No 142
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=30.67 E-value=22 Score=35.58 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccccccccccCCCCC
Q 046891 156 MLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRVIAALGFDSGINP 230 (520)
Q Consensus 156 l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~~~~gy~~G~~~ 230 (520)
+.++.+.|+++||||+.=.. -+.+....+.++.+.+=|+.--.++-.+-.-|---....+.+..||..-.++
T Consensus 77 ~~a~~~~pl~SlHH~~~~~P---ifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 77 LEAHPLAPLVSLHHWDSVDP---IFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eecCCCCceeeeeehhhccc---cCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 34456899999999996322 2456666677777777555444443222112222222234566899877663
No 143
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.65 E-value=1.7e+02 Score=30.81 Aligned_cols=94 Identities=12% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCeeecCC-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecCCCCcHHHHHhhCCCCCh
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SWS-RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPY-ANLYHYDMPLALHERYGGLLGR 186 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 186 (520)
++.++.|+++|+|.+.+++ +=+ ++.-.- |+.. ..+-..+.|+.+++.|+..+ +.| =+++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l-~R~~--~~~~~~~ai~~~~~~g~~~v~~Dl-i~GlPg------------ 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLL-GRTH--SSSKAIDAVQECSEHGFSNLSIDL-IYGLPT------------ 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCeEEEEe-ecCCCC------------
Confidence 6889999999999666666 221 111111 2211 12345678889999999754 443 456663
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEEecCcccc
Q 046891 187 QVVKDYADFAEFCFKTFGDRVKNWYTFNEPRVI 219 (520)
Q Consensus 187 ~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~~ 219 (520)
++.+.|.+-.+.+.+-=-+.|..+...=||.+.
T Consensus 167 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 345666666666665333578888888888754
No 144
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=30.60 E-value=1.9e+02 Score=30.20 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCeeecCC-ccc-ccccCCCCC-CChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcH
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SWS-RIFPQGAGR-VNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPL 174 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~-~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 174 (520)
++.++.|+++|++.+-+++ +-+ ++...- |+ .+. +-+.+.|+.+++.|+.++-.-.-+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHSA---KNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 7889999999999777777 332 333332 32 232 5577899999999998665444566663
No 145
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=30.55 E-value=1.2e+02 Score=29.62 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=42.7
Q ss_pred hhhccHHHHHHHHHcCCCeeecCCcccccccCCC--CCCChhHHHHHHHHHHHHHHcCCeeEE-EecCCCCc
Q 046891 105 QYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGA--GRVNWKGVAYYNRLIDYMLEQGITPYA-NLYHYDMP 173 (520)
Q Consensus 105 ~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~--g~~n~~gl~~y~~~i~~l~~~gi~p~v-tL~H~~~P 173 (520)
+-+++++=|+++++||.+..++-..+. |... .......++..+++.+.+.+.||+..+ +++|++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345677889999999999998643321 2110 112234456678888888999998766 33555555
No 146
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=30.29 E-value=1.6e+02 Score=29.99 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=47.8
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
-++|++...+.|++.+-+.++=|...-... +.=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 379999999999999888776555544321 44467788999999999999999999998
No 147
>PRK07094 biotin synthase; Provisional
Probab=29.72 E-value=89 Score=32.05 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHcCCCeeecCCc-c-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEE
Q 046891 108 RYKEDIDLMKKLNFDAYRFSIS-W-SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYAN 166 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~-W-sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vt 166 (520)
.-+|+++.|+++|++.+-++++ - .++...-....+ .+-+.+.|+.+++.||.+..+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecce
Confidence 4589999999999999999884 2 244433211122 356888999999999975433
No 148
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=29.65 E-value=98 Score=30.36 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 046891 149 YNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFKTFGDRV 207 (520)
Q Consensus 149 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~V 207 (520)
.++.++.+++.|+.-+=--.+|.... ...-++-.+....+.+.+..+.|. .+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a~-~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAAQ-AYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHHH-HTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHHH-hCCCeE
Confidence 56889999999999776666663222 111123356677777777777764 345444
No 149
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=29.32 E-value=1.2e+02 Score=31.14 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCe-eEE----------------EecCCCCcHHHHHhhCCCCCh-h-hHHHHHHHHHHHHHHhCCC-
Q 046891 147 AYYNRLIDYMLEQGIT-PYA----------------NLYHYDMPLALHERYGGLLGR-Q-VVKDYADFAEFCFKTFGDR- 206 (520)
Q Consensus 147 ~~y~~~i~~l~~~gi~-p~v----------------tL~H~~~P~~l~~~~ggw~~~-~-~~~~f~~ya~~~~~~~g~~- 206 (520)
+-|.++++.+++.||+ |++ .+++-.+|.|+.+++....+. + ..+.=.+||....+++-+.
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5577999999999965 332 456789999999987776543 2 2233345555555544231
Q ss_pred c--ceEEEecCcccc
Q 046891 207 V--KNWYTFNEPRVI 219 (520)
Q Consensus 207 V--~~W~t~NEp~~~ 219 (520)
| -+..|+|-+...
T Consensus 269 v~GvH~yt~n~~~~~ 283 (296)
T PRK09432 269 VKDFHFYTLNRAELT 283 (296)
T ss_pred CCEEEEecCCChHHH
Confidence 2 234467777644
No 150
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.11 E-value=2.9e+02 Score=28.67 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCeeEEEecCC---C--CcHHHHHh-------------h-----------CCCCChhhHHHHHHHHHHHH
Q 046891 150 NRLIDYMLEQGITPYANLYHY---D--MPLALHER-------------Y-----------GGLLGRQVVKDYADFAEFCF 200 (520)
Q Consensus 150 ~~~i~~l~~~gi~p~vtL~H~---~--~P~~l~~~-------------~-----------ggw~~~~~~~~f~~ya~~~~ 200 (520)
++||+.|+++|++.++-+.-+ + .|..-+-. | --|+||+.++.|.+.-+.+.
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 689999999999987654322 1 23222110 0 13889999999887666554
Q ss_pred HHhCCCcc-eEEEecCcccc
Q 046891 201 KTFGDRVK-NWYTFNEPRVI 219 (520)
Q Consensus 201 ~~~g~~V~-~W~t~NEp~~~ 219 (520)
...|+ +|+=+|||..+
T Consensus 147 ---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 ---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred ---hCCCceEeecCCCcccc
Confidence 23454 56668999855
No 151
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.09 E-value=1.7e+02 Score=30.59 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=55.5
Q ss_pred HHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHH
Q 046891 117 KKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFA 196 (520)
Q Consensus 117 ~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya 196 (520)
.+.|+..+|+ -| |.+-.+ +....+++.++++||..=+..+|-.|.+-+.++||+-+-+..++-=.++|
T Consensus 92 ~~~g~~k~RI-------NP---GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a 159 (361)
T COG0821 92 AECGVDKVRI-------NP---GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHA 159 (361)
T ss_pred hhcCcceEEE-------CC---cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3556666664 23 333222 36889999999999999999999999999999999887777777777777
Q ss_pred HHHHH
Q 046891 197 EFCFK 201 (520)
Q Consensus 197 ~~~~~ 201 (520)
+.+-+
T Consensus 160 ~~~e~ 164 (361)
T COG0821 160 ELLEE 164 (361)
T ss_pred HHHHH
Confidence 76433
No 152
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.75 E-value=41 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=21.0
Q ss_pred CcchhhHHHHHHHHHHHhhccccceeccc
Q 046891 1 MKKKAYAVRAFVVFLVCNFAHSAKIACIE 29 (520)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (520)
|+.+.-.+-.++++|++..+|+++||-+.
T Consensus 3 ~~~~~~ll~~~~~~~l~~~a~aE~iG~V~ 31 (165)
T COG3045 3 MKIRLLLLAGLLLLLLVGLAHAEEIGSVS 31 (165)
T ss_pred chHHHHHHHHHHHHHhccccchhhccccc
Confidence 45555555666688888889999888665
No 153
>PRK13792 lysozyme inhibitor; Provisional
Probab=28.74 E-value=49 Score=29.69 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=10.9
Q ss_pred cCCCCCCceecccccCcccCC
Q 046891 51 RKSFPDGFVFGTATSAYQVEG 71 (520)
Q Consensus 51 ~~~fp~~FlwG~atsa~Q~EG 71 (520)
...+|++=.--.-|-.||+|.
T Consensus 33 ~l~ip~~~~~~~~tv~YqC~~ 53 (127)
T PRK13792 33 YLALPGDAKLDTRSVDYKCEN 53 (127)
T ss_pred eeecCCCcccccceEEEECCC
Confidence 344555444444555666654
No 154
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=28.50 E-value=1.3e+02 Score=29.87 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=35.8
Q ss_pred HHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 114 DLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 114 ~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
++|+++|++.+=++-|=.|-.=.. .-+.-.+-+..++++||+|++|+
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f~E-------t~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYFGE-------TDEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcCCC-------CcHHHHHHHHHHHHCCCEEEEEe
Confidence 899999999988887644432211 12456778889999999999999
No 155
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=28.42 E-value=1.3e+02 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 114 DLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 114 ~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
+++|++|++..=++-|=.| +.+. | -.+-+..++++||+|++|.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc----H------HHHHHHHHHHCCCEEEEEE
Confidence 8999999999988887666 4333 1 3577889999999999999
No 156
>PTZ00445 p36-lilke protein; Provisional
Probab=27.29 E-value=1.1e+02 Score=29.99 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHcCCCeeecCCccccccc-CCCCCCChh---------HHHHHHHHHHHHHHcCCeeEEEecC
Q 046891 113 IDLMKKLNFDAYRFSISWSRIFP-QGAGRVNWK---------GVAYYNRLIDYMLEQGITPYANLYH 169 (520)
Q Consensus 113 i~l~~~lG~~~~Rfsi~Wsri~P-~~~g~~n~~---------gl~~y~~~i~~l~~~gi~p~vtL~H 169 (520)
++++++.|++++=+.+.=.-|-- .| |-.+.. +-.-...++..|+++||..+|.++-
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg-G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG-GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc-cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 57899999999988876554441 22 333332 3345788999999999998888764
No 157
>PRK12677 xylose isomerase; Provisional
Probab=27.22 E-value=4e+02 Score=28.40 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EEecCCCCcHHHHHhhCCCCCh
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPY-ANLYHYDMPLALHERYGGLLGR 186 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 186 (520)
..|-++.++++|++.+=|.. ..+.|-. -.... --+..+++-+.|.++||+.. +|...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~~~~~-~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-ATDAE-RDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-CChhh-hHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 58889999999999886632 2344443 11111 11346788888999999965 56666656644 23788884
No 158
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=26.31 E-value=3.2e+02 Score=24.84 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=37.9
Q ss_pred cHHHHHHHHHcCCCeeecCCc-ccc-cccCCCCCCChhHHHHHHHHHHHHHHcC-CeeEEEe
Q 046891 109 YKEDIDLMKKLNFDAYRFSIS-WSR-IFPQGAGRVNWKGVAYYNRLIDYMLEQG-ITPYANL 167 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~-Wsr-i~P~~~g~~n~~gl~~y~~~i~~l~~~g-i~p~vtL 167 (520)
-++.++.|+++|++.+.+|+. ++. +...-....+ .+.+.+.|+.++++| +.+.+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 478899999999999999995 532 2211101122 267889999999999 6544433
No 159
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.10 E-value=76 Score=36.43 Aligned_cols=64 Identities=20% Similarity=0.356 Sum_probs=42.2
Q ss_pred hhccHHH-HHHHHHcCCCeeecCC--cc-ccc-----------ccCCC-CCCC-hhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 106 YHRYKED-IDLMKKLNFDAYRFSI--SW-SRI-----------FPQGA-GRVN-WKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 106 y~ry~eD-i~l~~~lG~~~~Rfsi--~W-sri-----------~P~~~-g~~n-~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
|.-+.|+ +..+|+||.|++.+=- +- +.. -|... |..+ ..-+.=.+.||++|.+.||++++..-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 9999999999887311 11 121 12211 2222 00022389999999999999998776
Q ss_pred C
Q 046891 169 H 169 (520)
Q Consensus 169 H 169 (520)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 160
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=26.04 E-value=3.2e+02 Score=30.81 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEEecCCCCcHHHHHh----------
Q 046891 111 EDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGIT-PYANLYHYDMPLALHER---------- 179 (520)
Q Consensus 111 eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~---------- 179 (520)
+.|..+.++|...+|+.+. +.+..+-..++.+.|++.|+. |+|.=.||+.-..+...
T Consensus 49 ~Qi~~L~~aGceiVRvtvp------------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINP 116 (606)
T PRK00694 49 RQICALQEWGCDIVRVTVQ------------GLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRINP 116 (606)
T ss_pred HHHHHHHHcCCCEEEEcCC------------CHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEECC
Q ss_pred --hCC----CCChhh------------HHHHHHHHHHHHHH
Q 046891 180 --YGG----LLGRQV------------VKDYADFAEFCFKT 202 (520)
Q Consensus 180 --~gg----w~~~~~------------~~~f~~ya~~~~~~ 202 (520)
||. |...+. .+.|...++.|-++
T Consensus 117 GNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~ 157 (606)
T PRK00694 117 GNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRL 157 (606)
T ss_pred cccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHC
No 161
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=25.99 E-value=1.2e+02 Score=35.02 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=35.6
Q ss_pred HHHHHHcCCCeeecCCcccccc----------------cCCCCCCCh-----hHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 113 IDLMKKLNFDAYRFSISWSRIF----------------PQGAGRVNW-----KGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 113 i~l~~~lG~~~~Rfsi~Wsri~----------------P~~~g~~n~-----~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
|+-+|+||++++-+.--=.-.. |..--.++. ..++=+++||++|+++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999987654211110 000001111 1245589999999999999999754
No 162
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.78 E-value=2.1e+02 Score=31.08 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeeecCC-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SWS-RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP 173 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P 173 (520)
+|.+++|+++|++.+-+++ +-+ ++.-.-.-..+ ++.+.+.++.|+++||.+.+++.- ++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~Ii-GlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFIL-GLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEEE-eCC
Confidence 6778999999999888888 332 22222101123 356789999999999998777643 444
No 163
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.77 E-value=7.5e+02 Score=25.50 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=33.2
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCC
Q 046891 131 SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHY 170 (520)
Q Consensus 131 sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~ 170 (520)
++..|...+-++.+-+..++++.+.++++|-+.++=|+|.
T Consensus 61 ~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 61 GRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred cCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 3444553356788899999999999999999999999994
No 164
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.74 E-value=2.8e+02 Score=28.51 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 046891 183 LLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 183 w~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 218 (520)
++||+.++.|.+..+..+...|- --+|+=+|||.+
T Consensus 137 ftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 137 FTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 68999999998877555544432 246677999963
No 165
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=25.35 E-value=2.1e+02 Score=30.25 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHH
Q 046891 147 AYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCF 200 (520)
Q Consensus 147 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~ 200 (520)
+..+.+++.++++|+..=+..+|-.++..+.++||+-+-+..++--.++++.+-
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999976566677777777777653
No 166
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.81 E-value=5.1e+02 Score=25.62 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=34.7
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPY 164 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~ 164 (520)
+++-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||+..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCcee
Confidence 68899999999999988764211111111 11233 346678888999999964
No 167
>PLN03153 hypothetical protein; Provisional
Probab=24.15 E-value=70 Score=35.40 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=40.3
Q ss_pred HHHcC-CeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHH----HHHHHHh--CCCcceEEEecCccccccccccCCC
Q 046891 156 MLEQG-ITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFA----EFCFKTF--GDRVKNWYTFNEPRVIAALGFDSGI 228 (520)
Q Consensus 156 l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya----~~~~~~~--g~~V~~W~t~NEp~~~~~~gy~~G~ 228 (520)
+.+.| ++|+|+||||+.=. .-|.+-...+.++.+..=| ..++++. +|+..-|..- +..||..-.
T Consensus 327 ~les~p~~P~vSlHH~~~~~---p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~ 397 (537)
T PLN03153 327 LLSSHPIAPFVSIHHVEAVD---PFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQV 397 (537)
T ss_pred HhhcCCCCCceeeeeccccc---cccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEE
Confidence 55666 89999999999711 1123334446667666544 2233444 6666677654 567887665
Q ss_pred CCC
Q 046891 229 NPP 231 (520)
Q Consensus 229 ~~P 231 (520)
++-
T Consensus 398 y~~ 400 (537)
T PLN03153 398 FPS 400 (537)
T ss_pred ecC
Confidence 643
No 168
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.12 E-value=2.2e+02 Score=28.52 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=53.3
Q ss_pred HHHHHHHHHcC----CCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCC
Q 046891 110 KEDIDLMKKLN----FDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLL 184 (520)
Q Consensus 110 ~eDi~l~~~lG----~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 184 (520)
.+|++++.+.| ++.+|+.++-|.+.-... +.--.+.++-..+.++.+++.|++..++..+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~- 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR- 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC-
Confidence 78999999999 999999876654432211 2223346777889999999999987755432 222
Q ss_pred ChhhHHHHHHHHHHHHHHhC
Q 046891 185 GRQVVKDYADFAEFCFKTFG 204 (520)
Q Consensus 185 ~~~~~~~f~~ya~~~~~~~g 204 (520)
-.++.+.+.++.+.+ +|
T Consensus 140 --~~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 --TDLDFLIEVVEAAIE-AG 156 (268)
T ss_pred --CCHHHHHHHHHHHHH-cC
Confidence 234566777776643 44
No 169
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.96 E-value=4.2e+02 Score=27.01 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=37.3
Q ss_pred cHHHHHHHHHcCCCeee-cCCc-c-----cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 109 YKEDIDLMKKLNFDAYR-FSIS-W-----SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~R-fsi~-W-----sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
.+|.++.||++|++.+- .+.+ - .++.|.. ... +-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~---~t~---~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK---LSS---DEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC---CCH---HHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999885 2431 2 1233433 333 456799999999999987665
No 170
>PRK06256 biotin synthase; Validated
Probab=23.79 E-value=1.3e+02 Score=31.11 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHcCCCeeecCC-cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEE
Q 046891 108 RYKEDIDLMKKLNFDAYRFSI-SWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYAN 166 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vt 166 (520)
.-+|.++.|+++|++.+-+++ +=.++++.-....+ .+-..+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccC
Confidence 457899999999999998877 42234443211122 355778999999999975443
No 171
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=23.70 E-value=4.1e+02 Score=28.28 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE-EecCCCCcHHHHHhhCCCCCh
Q 046891 108 RYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYA-NLYHYDMPLALHERYGGLLGR 186 (520)
Q Consensus 108 ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~~~ggw~~~ 186 (520)
...+-++.++++|++.+=| ....+.|-+ -...+.. ...+++-+.|.++||++.. |..-+..|.+ +.|++.++
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las~ 105 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTSN 105 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCCC
Confidence 4588899999999998854 334556654 1111111 3367788889999999654 4432333433 12777775
No 172
>PTZ00445 p36-lilke protein; Provisional
Probab=23.48 E-value=1.2e+02 Score=29.87 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHh-hCCCCChh---------hHHHHHHHHHHHHH
Q 046891 147 AYYNRLIDYMLEQGITPYANLYHYDMPLALHER-YGGLLGRQ---------VVKDYADFAEFCFK 201 (520)
Q Consensus 147 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~-~ggw~~~~---------~~~~f~~ya~~~~~ 201 (520)
+--+.+++.|++.||+.+++=+ | .-|... -|||.++. ....|..+...+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~--D--nTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDF--D--LTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecc--h--hhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 3456889999999999887632 2 222221 28999997 55556666665544
No 173
>PRK05474 xylose isomerase; Provisional
Probab=23.41 E-value=9.8e+02 Score=26.05 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=48.8
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHH----HHHHcCCe-eEEEecCCCCcHHHHHhhCCC
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLID----YMLEQGIT-PYANLYHYDMPLALHERYGGL 183 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~----~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw 183 (520)
...=++.|.+||+..|-|-= ..|.|++ ....+ ..+-.+++++ .+.+.||+ +++|..-|..|.... |+.
T Consensus 81 ~d~afe~~~kLg~~~~~FHD--~D~~peg-~s~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~ 153 (437)
T PRK05474 81 ADAAFEFFTKLGVPYYCFHD--VDVAPEG-ASLKE-YNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAA 153 (437)
T ss_pred HHHHHHHHHHhCCCeeccCc--cccCCCC-CCHHH-HHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcC
Confidence 44456789999999987754 3788887 33322 2223344444 45567988 566888899998764 999
Q ss_pred CChh
Q 046891 184 LGRQ 187 (520)
Q Consensus 184 ~~~~ 187 (520)
+||+
T Consensus 154 Tnpd 157 (437)
T PRK05474 154 TNPD 157 (437)
T ss_pred CCCC
Confidence 9874
No 174
>PRK10426 alpha-glucosidase; Provisional
Probab=23.29 E-value=5e+02 Score=29.74 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=63.4
Q ss_pred cHHHHHHHHHcCCCeeecCC-cccccccCCCC-------CCChhHHHHHHHHHHHHHHcCCeeEEEecCC---CCcHHHH
Q 046891 109 YKEDIDLMKKLNFDAYRFSI-SWSRIFPQGAG-------RVNWKGVAYYNRLIDYMLEQGITPYANLYHY---DMPLALH 177 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g-------~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~ 177 (520)
..+-++.+++.|+..==+-| .|........| .+|.+-.-=-+++|+.|++.|++.++.+.-+ +.|..-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 45557888999976544323 57543221101 1233221224789999999999987766543 3344322
Q ss_pred Hh---------hC---------------CCCChhhHHHHHHHHHHHHHHhCCCcceE-EEecCc
Q 046891 178 ER---------YG---------------GLLGRQVVKDYADFAEFCFKTFGDRVKNW-YTFNEP 216 (520)
Q Consensus 178 ~~---------~g---------------gw~~~~~~~~f~~ya~~~~~~~g~~V~~W-~t~NEp 216 (520)
-. -| -++||+.++.|.+..+..+...| |+.| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 11 01 18899999999887765444454 7666 667884
No 175
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.13 E-value=5.1e+02 Score=26.39 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=32.7
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCC
Q 046891 132 RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHY 170 (520)
Q Consensus 132 ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~ 170 (520)
+..|...|-++.+-+..++++++.++++|-..++=|.|-
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 334543477899999999999999999999999999994
No 176
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.11 E-value=2.5e+02 Score=32.40 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHH
Q 046891 149 YNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQVVKDYADFAEFCFK 201 (520)
Q Consensus 149 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 201 (520)
...+|+.|+++|+..=+..+|-.++.-+..+||. +-...++--.+|++.|-+
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999875 555677777778877655
No 177
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=22.52 E-value=4.7e+02 Score=27.68 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEEecCCCCcHHHHH
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGIT-PYANLYHYDMPLALHE 178 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~ 178 (520)
-+.|..+.++|...+|+++. |.+..+-..++.+.|++.|.. |+|.=.|||.-..|..
T Consensus 34 v~QI~~L~~aGceivRvavp------------~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a 91 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVP------------DMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA 91 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE-------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH
Confidence 56788999999999999874 567777788999999999987 9999999998888874
No 178
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=22.35 E-value=3.4e+02 Score=31.85 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCeeecCCcccccccCC---CCCCChhHHHHHHHHHHHHHHcCCeeEEEec---CCCCc----------
Q 046891 110 KEDIDLMKKLNFDAYRFSISWSRIFPQG---AGRVNWKGVAYYNRLIDYMLEQGITPYANLY---HYDMP---------- 173 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~---H~~~P---------- 173 (520)
++=++.++++|+. +++-|..|.=.. +=.+|...--....+++.|+++|++-++.+. +-+..
T Consensus 314 ~dvv~~~~~agiP---ld~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 314 RDVVENYRAAGIP---LDVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHHcCCC---cceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 3446677888876 234454442221 1234554445578999999999999999887 32222
Q ss_pred -----------HHHHHhhCC------CCChhhHHHHHHHHHHHHHHhCCCcc---eEEEecCcccccc
Q 046891 174 -----------LALHERYGG------LLGRQVVKDYADFAEFCFKTFGDRVK---NWYTFNEPRVIAA 221 (520)
Q Consensus 174 -----------~~l~~~~gg------w~~~~~~~~f~~ya~~~~~~~g~~V~---~W~t~NEp~~~~~ 221 (520)
.-+-+-..| ++|+.+++++.+ .+++|.+.|. +|+-.|||..++.
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 111111123 788877777654 4558888765 8999999976653
No 179
>PRK08508 biotin synthase; Provisional
Probab=21.90 E-value=1.9e+02 Score=29.28 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCeeecCCcc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 046891 109 YKEDIDLMKKLNFDAYRFSISW-SRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL 167 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~W-sri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL 167 (520)
.+|.++.|+++|++++-.+++= ++++|.-...-++ +-..+.|+.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~---~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTW---EERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCH---HHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999988722 4567664222233 445567788999999764433
No 180
>PRK14567 triosephosphate isomerase; Provisional
Probab=21.63 E-value=1.9e+02 Score=29.02 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 114 DLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 114 ~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
++||++|++.+=++-|=.|..=.+ -| +.-.+-+..++++||+|++|+-
T Consensus 79 ~mLkd~G~~yviiGHSERR~~f~E---td----~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLIGHSERRSLFAE---SD----EDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEECcccccCccCC---CH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 799999999998887644432222 12 3455677889999999999993
No 181
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.54 E-value=61 Score=20.59 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCee
Q 046891 149 YNRLIDYMLEQGITP 163 (520)
Q Consensus 149 y~~~i~~l~~~gi~p 163 (520)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 357888888889887
No 182
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.49 E-value=4.9e+02 Score=26.50 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=60.2
Q ss_pred CcCCchhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHh
Q 046891 100 DVTVDQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHER 179 (520)
Q Consensus 100 ~~a~d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 179 (520)
-.+...|++..+=-+.+|+.|.+.+|=+.-=+|--|-......++||++..+. ..+.|+-. +|
T Consensus 52 PCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a---~~~~Gl~v-vt------------- 114 (286)
T COG2876 52 PCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRA---ADETGLPV-VT------------- 114 (286)
T ss_pred CcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHH---HHHcCCee-EE-------------
Confidence 34678899999999999999999999999888887776555677777755443 44566643 32
Q ss_pred hCCCCChhhHHHHHHHHHHH
Q 046891 180 YGGLLGRQVVKDYADFAEFC 199 (520)
Q Consensus 180 ~ggw~~~~~~~~f~~ya~~~ 199 (520)
--.+++.++.+.+|++.+
T Consensus 115 --Evm~~~~~e~~~~y~Dil 132 (286)
T COG2876 115 --EVMDVRDVEAAAEYADIL 132 (286)
T ss_pred --EecCHHHHHHHHhhhhHH
Confidence 125678889999998765
No 183
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.33 E-value=1.3e+02 Score=29.84 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=40.2
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYA 165 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~v 165 (520)
....+++.-|++++.+|.+..++........+.. ...-+..++.++++.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4566778889999999999999864322111111 111234556788888899999997543
No 184
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.20 E-value=1.8e+02 Score=28.21 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=54.2
Q ss_pred HHHHHH----HHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCC
Q 046891 110 KEDIDL----MKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLL 184 (520)
Q Consensus 110 ~eDi~l----~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 184 (520)
.+|++. +++.|++.+|+.++=|....... +.--++.++-..++++.+++.|++..+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 455555 55699999999986555333321 333456778889999999999999988886632
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 046891 185 GRQVVKDYADFAEFCFKT 202 (520)
Q Consensus 185 ~~~~~~~f~~ya~~~~~~ 202 (520)
+-..+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 12345667777777654
No 185
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.95 E-value=1.5e+02 Score=25.96 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCeeecCCc-cccc-ccCCCCCCChhHHHHHHHHHHHHHHcCCee
Q 046891 110 KEDIDLMKKLNFDAYRFSIS-WSRI-FPQGAGRVNWKGVAYYNRLIDYMLEQGITP 163 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi~-Wsri-~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p 163 (520)
.+.++.|+++|++.+++|+. -+.- .....+ .....+-..+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999994 2221 111100 1123366778999999999986
No 186
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.88 E-value=99 Score=28.62 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=41.0
Q ss_pred chhhccHHHHHHHHHcCCCeeecCCcccccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEE
Q 046891 104 DQYHRYKEDIDLMKKLNFDAYRFSISWSRIFPQGA-GRVNWKGVAYYNRLIDYMLEQGITPYA 165 (520)
Q Consensus 104 d~y~ry~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~y~~~i~~l~~~gi~p~v 165 (520)
......++-+++++.+|++.+++...+-...+... ..--...++.++.+.+.+.++|+++.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 34567889999999999999999876411111110 011123456778888888899987544
No 187
>PRK15492 triosephosphate isomerase; Provisional
Probab=20.79 E-value=2.1e+02 Score=28.93 Aligned_cols=48 Identities=13% Similarity=-0.044 Sum_probs=35.8
Q ss_pred HHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 046891 114 DLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 114 ~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
++||++|++.+=++-|=.|..=.+ -| +.-.+-+..++++||.|++|+-
T Consensus 88 ~mLkd~G~~~viiGHSERR~~f~E---td----~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 88 LMLKEIGTQLVMIGHSERRHKFGE---TD----QEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHcCCCEEEECccccccccCc---ch----HHHHHHHHHHHHCCCEEEEEcC
Confidence 799999999988887654543222 22 3455678889999999999994
No 188
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.64 E-value=4.1e+02 Score=27.94 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCeeecCC-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCcHHHHHhhCCCCChh
Q 046891 110 KEDIDLMKKLNFDAYRFSI-SWS-RIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMPLALHERYGGLLGRQ 187 (520)
Q Consensus 110 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 187 (520)
+|.+++|+++|++.+.+++ +-+ ++.-.-....+. +-..+.++.+++.||..+-.-.=+++|. +
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~---~~~~~a~~~l~~~g~~~v~~dli~GlPg------------q 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTP---GRAVAAAREARAAGFEHVNLDLIYGTPG------------E 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCcEEEEEeccCCC------------C
Confidence 6889999999999777777 332 222221011222 4567889999999998343333345553 2
Q ss_pred hHHHHHHHHHHHHHHhC-CCcceEEEecCccccc
Q 046891 188 VVKDYADFAEFCFKTFG-DRVKNWYTFNEPRVIA 220 (520)
Q Consensus 188 ~~~~f~~ya~~~~~~~g-~~V~~W~t~NEp~~~~ 220 (520)
+.+.|.+=.+.+.+ ++ +.|......=||+...
T Consensus 173 t~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 173 SDDDWRASLDAALE-AGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChH
Confidence 34445555555443 43 4555555555666543
No 189
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=20.48 E-value=2e+02 Score=32.52 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCeeEEEec
Q 046891 146 VAYYNRLIDYMLEQGITPYANLY 168 (520)
Q Consensus 146 l~~y~~~i~~l~~~gi~p~vtL~ 168 (520)
++=+++||++|+++||++|+.+-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 35689999999999999999653
No 190
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=20.47 E-value=2.9e+02 Score=27.23 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=43.2
Q ss_pred ccChHHHHHHHHHHHHHcCC-CcEEEecCCCCCCCCCCcCcccCchhHHHHHHHHHHHHHHHHH--cCCCEEEEee
Q 046891 402 YIVPWGLYNALMYVKERYGN-PTVMLSENGMDNPSNYTLTHLLHDTTRINYYRDYISQLKKAID--DGANVTGYFA 474 (520)
Q Consensus 402 ~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hl~~~~~Ai~--dGv~V~GY~~ 474 (520)
.++-+.|..+..++..+=.. .-++|---|.+.++. + -.....+||..||+++.+.|+ .+|.+.|-=.
T Consensus 116 niDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~s-----t-~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGI 185 (219)
T PF11775_consen 116 NIDGEALRWAAERLLARPEQRKILIVISDGAPADDS-----T-LSANDGDYLDAHLRQVIAEIETRSDVELIAIGI 185 (219)
T ss_pred CCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCccc-----c-cccCChHHHHHHHHHHHHHHhccCCcEEEEEEc
Confidence 46667777777777665322 125555566665321 1 122456799999999999997 4788877543
No 191
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.29 E-value=7.3e+02 Score=24.50 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEe--cCCCCcHHHHHhhCCCCCh
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANL--YHYDMPLALHERYGGLLGR 186 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL--~H~~~P~~l~~~~ggw~~~ 186 (520)
|.|-+++++++|++.+=+++.-....|.. -.++. +.-..+-+.|.++||++...- .|...| -+-.++
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~gl~i~~~~~~~~~~~~-------l~~~~~ 86 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSR---EQRLALVNAIIETGVRIPSMCLSAHRRFP-------LGSKDK 86 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCH---HHHHHHHHHHHHcCCCceeeecCCCccCc-------CCCcCH
Q ss_pred hhHHHHHHHHHHHHH
Q 046891 187 QVVKDYADFAEFCFK 201 (520)
Q Consensus 187 ~~~~~f~~ya~~~~~ 201 (520)
+..+...++.+.+++
T Consensus 87 ~~r~~~~~~~~~~i~ 101 (279)
T TIGR00542 87 AVRQQGLEIMEKAIQ 101 (279)
T ss_pred HHHHHHHHHHHHHHH
No 192
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.21 E-value=3.2e+02 Score=30.98 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=55.8
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEEecCCCCc----HHHHHh-----
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLIDYMLEQGITPYANLYHYDMP----LALHER----- 179 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~----- 179 (520)
.++|++++.+.|++.+|+..+-+.+ +-....++..+++|....+++..-+.| ..+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4667889999999999998765544 223566677777787777776543334 111110
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCCcceEEEecCccc
Q 046891 180 -----------YGGLLGRQVVKDYADFAEFCFKTFGDRVKNWYTFNEPRV 218 (520)
Q Consensus 180 -----------~ggw~~~~~~~~f~~ya~~~~~~~g~~V~~W~t~NEp~~ 218 (520)
-.|-..|.- ..+.++.+-++++ ..-...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~~---~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPYA---AYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCHHH---HHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 134555543 3555555566664 3345666666553
No 193
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=20.18 E-value=1.1e+03 Score=25.54 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=48.0
Q ss_pred cHHHHHHHHHcCCCeeecCCcccccccCCCCCCChhHHHHHHHHHH----HHHHcCCe-eEEEecCCCCcHHHHHhhCCC
Q 046891 109 YKEDIDLMKKLNFDAYRFSISWSRIFPQGAGRVNWKGVAYYNRLID----YMLEQGIT-PYANLYHYDMPLALHERYGGL 183 (520)
Q Consensus 109 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~y~~~i~----~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw 183 (520)
.+.=++.|.+||+..|-|-= ..|.|++ ....+ -.+-.+++++ .+.+.||+ +++|..-|..|.... |+.
T Consensus 80 ~daaFef~~kLg~~~~~FHD--~D~~peg-~~~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~ 152 (434)
T TIGR02630 80 VDAAFEFFEKLGVPYYCFHD--RDIAPEG-ASLRE-TNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAA 152 (434)
T ss_pred HHHHHHHHHHhCCCeeccCc--cccCCCC-CCHHH-HHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcC
Confidence 34446779999999887653 4788887 33322 1122344443 45667998 456888899998764 999
Q ss_pred CChh
Q 046891 184 LGRQ 187 (520)
Q Consensus 184 ~~~~ 187 (520)
+||+
T Consensus 153 TnPd 156 (434)
T TIGR02630 153 TSPD 156 (434)
T ss_pred CCCC
Confidence 9874
Done!