BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046895
         (275 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N5U|A Chain A, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
           Catalytic Subunit Of Pp1
 pdb|3N5U|B Chain B, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
           Catalytic Subunit Of Pp1
          Length = 300

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 202 EKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPV 257
           EKL+L SI+G  L V         +G    K  QL   +I G   KS EI ++ P+
Sbjct: 5   EKLNLDSIIGRLLEV---------QGSRPGKNVQLTENEIRGLCLKSREIFLSQPI 51


>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
           1) Complexed With Microcystin-Lr Toxin
 pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
           1) Complexed With Microcystin-Lr Toxin
          Length = 330

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 202 EKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPV 257
           EKL+L SI+G  L V         +G    K  QL   +I G   KS EI ++ P+
Sbjct: 5   EKLNLDSIIGRLLEV---------QGSRPGKNVQLTENEIRGLCLKSREIFLSQPI 51


>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With
           Cell-Permeable Peptide
 pdb|4G9J|B Chain B, Protein SerTHR PHOSPHATASE-1 In Complex With
           Cell-Permeable Peptide
          Length = 331

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 202 EKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPV 257
           EKL+L SI+G  L V         +G    K  QL   +I G   KS EI ++ P+
Sbjct: 6   EKLNLDSIIGRLLEV---------QGSRPGKNVQLTENEIRGLCLKSREIFLSQPI 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,167,368
Number of Sequences: 62578
Number of extensions: 260081
Number of successful extensions: 698
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 9
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)