Query 046895
Match_columns 275
No_of_seqs 130 out of 2003
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 8.7E-26 1.9E-30 200.3 21.5 226 4-231 71-335 (358)
2 TIGR00817 tpt Tpt phosphate/ph 99.9 3.7E-22 8.1E-27 174.4 16.7 199 2-227 56-296 (302)
3 PRK11453 O-acetylserine/cystei 99.9 1.6E-21 3.4E-26 170.2 20.0 183 22-227 103-290 (299)
4 PRK11272 putative DMT superfam 99.9 2.2E-21 4.8E-26 168.7 19.3 175 22-226 113-287 (292)
5 PRK11689 aromatic amino acid e 99.9 1.7E-21 3.8E-26 169.6 16.6 182 22-226 108-289 (295)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 6E-21 1.3E-25 163.1 18.3 169 22-219 90-259 (260)
7 PF06027 DUF914: Eukaryotic pr 99.9 1.4E-20 3.1E-25 164.0 16.9 190 22-231 122-312 (334)
8 PRK10532 threonine and homoser 99.9 6.8E-20 1.5E-24 159.4 19.0 172 24-226 112-283 (293)
9 TIGR03340 phn_DUF6 phosphonate 99.8 7.8E-20 1.7E-24 158.2 15.9 172 22-221 106-280 (281)
10 PTZ00343 triose or hexose phos 99.8 3.4E-19 7.3E-24 158.5 17.0 177 22-225 157-349 (350)
11 PRK15430 putative chlorampheni 99.8 5.7E-18 1.2E-22 147.6 17.7 169 22-224 116-285 (296)
12 COG5006 rhtA Threonine/homoser 99.7 6.2E-16 1.3E-20 126.3 16.1 194 4-228 64-286 (292)
13 COG0697 RhaT Permeases of the 99.7 1E-15 2.2E-20 132.2 18.3 173 22-225 113-288 (292)
14 COG2510 Predicted membrane pro 99.7 7.5E-16 1.6E-20 113.0 12.1 135 87-224 5-139 (140)
15 COG2962 RarD Predicted permeas 99.6 1.2E-14 2.6E-19 121.7 16.4 172 22-227 115-286 (293)
16 PF08449 UAA: UAA transporter 99.6 3E-14 6.4E-19 124.6 19.1 191 22-229 107-302 (303)
17 KOG4510 Permease of the drug/m 99.6 9.1E-17 2E-21 132.0 2.1 190 22-228 140-329 (346)
18 PF00892 EamA: EamA-like trans 99.6 6.2E-15 1.3E-19 111.5 9.7 125 95-223 1-125 (126)
19 KOG2765 Predicted membrane pro 99.6 7.6E-15 1.6E-19 126.2 10.0 188 22-227 202-393 (416)
20 TIGR00776 RhaT RhaT L-rhamnose 99.6 1E-13 2.3E-18 120.3 16.5 174 22-224 103-288 (290)
21 TIGR00688 rarD rarD protein. T 99.5 3.3E-13 7.2E-18 115.2 14.2 143 22-199 113-255 (256)
22 PRK15430 putative chlorampheni 99.4 3.3E-12 7E-17 111.4 14.8 139 82-224 5-145 (296)
23 KOG1580 UDP-galactose transpor 99.4 7.7E-12 1.7E-16 101.5 14.1 182 22-223 128-312 (337)
24 TIGR00688 rarD rarD protein. T 99.4 9.3E-12 2E-16 106.3 13.8 137 85-224 2-142 (256)
25 KOG1583 UDP-N-acetylglucosamin 99.3 3E-11 6.6E-16 100.2 12.7 191 22-224 108-314 (330)
26 KOG1441 Glucose-6-phosphate/ph 99.3 1.1E-11 2.3E-16 107.3 9.1 178 22-231 126-314 (316)
27 TIGR03340 phn_DUF6 phosphonate 99.3 1.2E-10 2.7E-15 100.7 14.7 133 87-224 3-135 (281)
28 KOG2766 Predicted membrane pro 99.3 3.8E-12 8.2E-17 104.4 4.4 179 22-224 121-299 (336)
29 PF03151 TPT: Triose-phosphate 99.2 3.1E-10 6.7E-15 89.1 13.8 138 86-224 1-153 (153)
30 PLN00411 nodulin MtN21 family 99.2 5.6E-10 1.2E-14 99.5 15.3 140 84-225 12-157 (358)
31 KOG1581 UDP-galactose transpor 99.1 1.1E-09 2.4E-14 92.3 13.2 188 22-228 126-317 (327)
32 PRK02971 4-amino-4-deoxy-L-ara 99.1 2.2E-09 4.8E-14 81.4 13.7 122 85-227 2-125 (129)
33 PF04142 Nuc_sug_transp: Nucle 99.1 2.1E-09 4.5E-14 90.8 15.0 183 22-215 60-244 (244)
34 PF13536 EmrE: Multidrug resis 99.1 6.8E-10 1.5E-14 82.7 10.7 108 119-227 2-109 (113)
35 PRK11272 putative DMT superfam 99.1 2.2E-09 4.7E-14 93.4 15.0 132 87-225 10-142 (292)
36 TIGR00950 2A78 Carboxylate/Ami 99.1 1.5E-09 3.2E-14 92.7 12.1 119 97-224 1-119 (260)
37 PRK11689 aromatic amino acid e 99.1 3.5E-09 7.5E-14 92.3 14.3 131 85-225 4-138 (295)
38 PRK11453 O-acetylserine/cystei 99.1 3.1E-09 6.8E-14 92.8 14.0 127 87-225 6-133 (299)
39 COG2962 RarD Predicted permeas 99.0 5E-09 1.1E-13 88.2 12.6 141 82-225 4-145 (293)
40 KOG2234 Predicted UDP-galactos 99.0 1.9E-08 4.1E-13 87.0 15.6 188 22-229 135-327 (345)
41 KOG1582 UDP-galactose transpor 99.0 5.3E-09 1.1E-13 86.9 10.5 202 2-226 100-334 (367)
42 KOG1443 Predicted integral mem 98.9 4.3E-08 9.2E-13 82.9 14.2 174 22-222 127-313 (349)
43 KOG1444 Nucleotide-sugar trans 98.9 4.1E-08 8.9E-13 83.8 13.7 181 22-229 120-305 (314)
44 PTZ00343 triose or hexose phos 98.9 1.5E-07 3.2E-12 84.0 16.2 135 87-224 51-186 (350)
45 TIGR00817 tpt Tpt phosphate/ph 98.8 6.8E-08 1.5E-12 84.5 13.3 121 99-223 16-136 (302)
46 PRK15051 4-amino-4-deoxy-L-ara 98.8 4.9E-08 1.1E-12 72.3 10.2 68 157-224 42-109 (111)
47 PF06800 Sugar_transport: Suga 98.8 7.2E-07 1.6E-11 75.6 16.5 171 22-221 89-268 (269)
48 COG0697 RhaT Permeases of the 98.7 6.4E-07 1.4E-11 77.1 15.2 143 82-228 4-147 (292)
49 TIGR00803 nst UDP-galactose tr 98.7 1.2E-07 2.6E-12 79.2 9.4 193 24-221 23-221 (222)
50 KOG1442 GDP-fucose transporter 98.7 3.8E-08 8.1E-13 82.0 5.5 188 22-233 145-336 (347)
51 TIGR00776 RhaT RhaT L-rhamnose 98.6 7.2E-07 1.6E-11 77.6 11.6 131 86-225 2-137 (290)
52 PRK10532 threonine and homoser 98.5 2.1E-06 4.5E-11 74.8 13.0 127 83-223 10-136 (293)
53 PRK10452 multidrug efflux syst 98.4 4.4E-06 9.6E-11 62.3 11.1 68 159-226 37-105 (120)
54 KOG4314 Predicted carbohydrate 98.4 1.2E-06 2.6E-11 69.7 6.7 178 22-225 96-277 (290)
55 KOG3912 Predicted integral mem 98.3 5.2E-06 1.1E-10 69.7 10.1 185 22-223 129-333 (372)
56 PF06027 DUF914: Eukaryotic pr 98.3 1.3E-05 2.8E-10 70.6 12.9 78 149-227 77-154 (334)
57 PRK09541 emrE multidrug efflux 98.3 1.9E-05 4.1E-10 58.1 10.8 68 159-226 37-105 (110)
58 COG5070 VRG4 Nucleotide-sugar 98.2 3.3E-06 7.2E-11 68.5 6.7 187 22-229 111-301 (309)
59 PF05653 Mg_trans_NIPA: Magnes 98.2 7.5E-06 1.6E-10 71.3 8.9 68 159-226 220-294 (300)
60 PF08449 UAA: UAA transporter 98.1 6E-05 1.3E-09 66.0 13.4 127 98-230 13-142 (303)
61 PF05653 Mg_trans_NIPA: Magnes 98.1 2.2E-05 4.7E-10 68.4 9.4 120 82-225 4-123 (300)
62 KOG4510 Permease of the drug/m 98.0 1.3E-06 2.8E-11 72.8 0.7 138 82-227 35-172 (346)
63 PRK10650 multidrug efflux syst 98.0 0.00013 2.7E-09 53.6 11.0 64 160-223 43-107 (109)
64 PRK11431 multidrug efflux syst 98.0 0.00011 2.3E-09 53.7 10.3 66 159-224 36-102 (105)
65 COG2076 EmrE Membrane transpor 98.0 9.9E-05 2.1E-09 53.4 9.7 65 161-225 39-104 (106)
66 PF04657 DUF606: Protein of un 97.9 0.00045 9.7E-09 53.2 12.2 132 86-221 2-138 (138)
67 PF00893 Multi_Drug_Res: Small 97.8 0.00017 3.8E-09 51.5 8.7 57 159-215 36-93 (93)
68 PF04142 Nuc_sug_transp: Nucle 97.8 0.00013 2.9E-09 61.7 8.3 77 152-229 18-94 (244)
69 PRK13499 rhamnose-proton sympo 97.8 0.0025 5.5E-08 56.3 16.5 187 22-225 117-342 (345)
70 COG3238 Uncharacterized protei 97.7 0.00083 1.8E-08 51.9 11.7 139 84-225 4-147 (150)
71 PRK13499 rhamnose-proton sympo 97.4 0.0025 5.4E-08 56.4 11.5 137 82-225 4-154 (345)
72 PF06800 Sugar_transport: Suga 97.4 0.0022 4.8E-08 54.6 10.7 81 150-231 44-129 (269)
73 PF10639 UPF0546: Uncharacteri 97.3 0.0018 3.9E-08 47.7 7.8 110 91-222 2-112 (113)
74 KOG2922 Uncharacterized conser 97.1 0.0018 3.9E-08 55.8 7.3 185 22-226 107-308 (335)
75 KOG2234 Predicted UDP-galactos 97.1 0.035 7.5E-07 48.7 15.3 138 85-223 15-163 (345)
76 PF07857 DUF1632: CEO family ( 96.9 0.0035 7.6E-08 53.1 7.2 131 86-229 1-139 (254)
77 KOG1441 Glucose-6-phosphate/ph 96.6 0.0021 4.5E-08 56.2 3.8 107 100-209 32-140 (316)
78 COG2510 Predicted membrane pro 96.4 0.0012 2.6E-08 49.2 0.6 45 6-50 62-138 (140)
79 COG4975 GlcU Putative glucose 96.1 0.0014 3.1E-08 54.4 0.0 175 22-224 103-285 (288)
80 KOG1580 UDP-galactose transpor 96.1 0.013 2.9E-07 48.4 5.4 136 90-231 18-164 (337)
81 COG4975 GlcU Putative glucose 96.0 0.0034 7.4E-08 52.2 1.8 133 85-227 2-139 (288)
82 PF13536 EmrE: Multidrug resis 95.7 0.0041 9E-08 46.0 1.0 30 22-51 77-106 (113)
83 KOG2765 Predicted membrane pro 95.7 0.0087 1.9E-07 52.7 2.9 67 163-229 170-236 (416)
84 KOG2922 Uncharacterized conser 95.7 0.0045 9.8E-08 53.4 1.1 123 80-226 16-138 (335)
85 KOG1444 Nucleotide-sugar trans 95.4 0.54 1.2E-05 40.9 12.7 120 99-224 26-149 (314)
86 COG5006 rhtA Threonine/homoser 95.3 0.71 1.5E-05 38.9 12.7 102 86-196 13-115 (292)
87 KOG4314 Predicted carbohydrate 95.2 0.015 3.2E-07 46.8 2.4 62 165-226 66-127 (290)
88 PF00892 EamA: EamA-like trans 95.0 0.013 2.9E-07 43.3 1.7 29 22-50 97-125 (126)
89 PF06379 RhaT: L-rhamnose-prot 95.0 0.7 1.5E-05 40.7 12.3 178 30-224 132-340 (344)
90 PRK15051 4-amino-4-deoxy-L-ara 94.8 0.026 5.5E-07 41.7 2.8 29 22-50 80-108 (111)
91 KOG1443 Predicted integral mem 94.6 0.1 2.2E-06 45.0 6.2 70 156-226 89-158 (349)
92 PF07168 Ureide_permease: Urei 93.5 0.046 9.9E-07 47.0 1.9 130 91-223 2-145 (336)
93 PRK02237 hypothetical protein; 93.1 0.63 1.4E-05 33.7 7.0 47 180-226 61-107 (109)
94 PF06379 RhaT: L-rhamnose-prot 93.1 0.78 1.7E-05 40.4 8.9 142 82-227 4-156 (344)
95 PRK09541 emrE multidrug efflux 92.1 0.11 2.3E-06 38.3 2.1 29 22-50 74-102 (110)
96 KOG3912 Predicted integral mem 91.8 0.25 5.4E-06 42.2 4.2 62 163-224 97-158 (372)
97 PRK10650 multidrug efflux syst 91.5 0.15 3.4E-06 37.3 2.4 28 22-49 79-106 (109)
98 PRK10452 multidrug efflux syst 91.2 0.16 3.6E-06 37.9 2.3 30 22-51 74-103 (120)
99 COG2076 EmrE Membrane transpor 90.7 0.21 4.5E-06 36.3 2.4 29 22-50 74-102 (106)
100 PF02694 UPF0060: Uncharacteri 90.2 2.9 6.2E-05 30.3 7.7 46 181-226 60-105 (107)
101 PRK11431 multidrug efflux syst 90.0 0.24 5.2E-06 36.1 2.3 29 22-50 73-101 (105)
102 KOG2766 Predicted membrane pro 88.4 0.081 1.8E-06 44.5 -1.3 76 151-227 78-153 (336)
103 PRK02971 4-amino-4-deoxy-L-ara 88.2 0.32 7E-06 36.9 1.9 26 25-50 96-121 (129)
104 PF04342 DUF486: Protein of un 87.2 0.66 1.4E-05 33.4 2.8 30 193-222 77-106 (108)
105 KOG1581 UDP-galactose transpor 87.1 11 0.00024 32.7 10.6 77 151-228 83-159 (327)
106 COG5070 VRG4 Nucleotide-sugar 85.8 4.8 0.00011 33.4 7.5 58 170-227 86-143 (309)
107 COG3169 Uncharacterized protei 85.8 2.1 4.5E-05 30.4 4.7 33 192-224 83-115 (116)
108 KOG1442 GDP-fucose transporter 85.4 0.99 2.1E-05 38.5 3.4 110 111-224 58-174 (347)
109 COG1742 Uncharacterized conser 84.3 3.4 7.4E-05 29.7 5.2 47 180-226 60-106 (109)
110 KOG4831 Unnamed protein [Funct 83.8 2.9 6.3E-05 30.2 4.7 60 164-223 64-124 (125)
111 PF03151 TPT: Triose-phosphate 82.8 1.1 2.3E-05 34.5 2.5 28 22-49 124-151 (153)
112 PF15102 TMEM154: TMEM154 prot 79.5 2.5 5.5E-05 32.5 3.4 15 261-275 118-132 (146)
113 PF07857 DUF1632: CEO family ( 78.4 9.5 0.00021 32.5 6.9 79 33-111 116-209 (254)
114 PF05297 Herpes_LMP1: Herpesvi 76.1 0.7 1.5E-05 39.4 -0.5 63 162-224 118-184 (381)
115 COG3086 RseC Positive regulato 73.4 3.1 6.7E-05 31.9 2.4 26 175-200 71-96 (150)
116 PF03348 Serinc: Serine incorp 72.5 73 0.0016 29.4 11.6 59 156-227 248-306 (429)
117 PF01102 Glycophorin_A: Glycop 70.6 2.6 5.6E-05 31.6 1.4 10 261-270 110-119 (122)
118 PF03547 Mem_trans: Membrane t 70.4 80 0.0017 28.2 13.5 17 154-170 65-81 (385)
119 KOG1583 UDP-N-acetylglucosamin 69.3 6.3 0.00014 33.8 3.6 67 166-232 78-145 (330)
120 COG4657 RnfA Predicted NADH:ub 67.7 35 0.00077 26.8 7.1 58 22-105 88-152 (193)
121 PF04246 RseC_MucC: Positive r 65.7 7.2 0.00016 29.6 3.1 23 178-200 67-89 (135)
122 PRK13108 prolipoprotein diacyl 64.7 48 0.0011 30.9 8.7 47 181-227 226-277 (460)
123 PRK10862 SoxR reducing system 62.5 8.9 0.00019 30.0 3.1 20 179-198 75-94 (154)
124 PF05977 MFS_3: Transmembrane 60.6 1.6E+02 0.0034 28.1 14.3 41 182-222 350-390 (524)
125 TIGR00910 2A0307_GadC glutamat 59.3 1.3E+02 0.0027 28.5 10.8 8 161-168 370-377 (507)
126 PRK11902 ampG muropeptide tran 59.0 1.3E+02 0.0029 26.8 14.0 21 204-224 368-388 (402)
127 PRK06638 NADH:ubiquinone oxido 57.0 1.1E+02 0.0023 25.0 11.0 33 193-225 133-167 (198)
128 PF08507 COPI_assoc: COPI asso 56.0 30 0.00065 26.3 5.0 16 208-223 89-104 (136)
129 KOG0569 Permease of the major 49.9 2.3E+02 0.0049 26.7 10.7 19 199-217 176-194 (485)
130 PF10639 UPF0546: Uncharacteri 46.4 11 0.00024 27.8 1.2 28 22-49 85-112 (113)
131 PRK05771 V-type ATP synthase s 45.7 2.8E+02 0.006 27.1 11.0 26 201-226 502-527 (646)
132 PF07214 DUF1418: Protein of u 44.8 26 0.00056 24.9 2.7 15 210-224 51-65 (96)
133 PLN00028 nitrate transmembrane 42.7 2.8E+02 0.006 25.6 10.6 14 209-222 417-430 (476)
134 COG1971 Predicted membrane pro 40.9 44 0.00095 27.1 3.9 43 181-223 43-86 (190)
135 PF05297 Herpes_LMP1: Herpesvi 40.5 9.3 0.0002 32.8 0.0 10 83-92 105-114 (381)
136 TIGR01167 LPXTG_anchor LPXTG-m 40.5 35 0.00076 18.7 2.4 17 205-221 11-27 (34)
137 PF01102 Glycophorin_A: Glycop 40.4 21 0.00045 26.8 1.8 14 211-224 76-89 (122)
138 PF15048 OSTbeta: Organic solu 39.0 31 0.00067 25.8 2.5 27 198-224 26-56 (125)
139 PF05915 DUF872: Eukaryotic pr 38.2 73 0.0016 23.5 4.5 13 38-50 54-66 (115)
140 TIGR00892 2A0113 monocarboxyla 37.6 3.3E+02 0.007 25.0 12.6 12 208-219 403-414 (455)
141 PF06609 TRI12: Fungal trichot 37.5 3.2E+02 0.0069 26.6 9.8 20 203-222 531-550 (599)
142 COG2807 CynX Cyanate permease 36.6 3.3E+02 0.0072 24.8 11.7 142 82-223 210-379 (395)
143 PRK12437 prolipoprotein diacyl 35.8 2E+02 0.0044 24.6 7.5 46 180-225 206-256 (269)
144 PF06781 UPF0233: Uncharacteri 35.6 76 0.0017 22.2 3.9 57 148-224 29-85 (87)
145 PF09656 PGPGW: Putative trans 35.4 75 0.0016 20.0 3.5 45 35-110 5-49 (53)
146 COG3247 HdeD Uncharacterized c 35.3 2.4E+02 0.0052 22.8 12.6 62 159-223 111-176 (185)
147 PRK10263 DNA translocase FtsK; 33.7 5.6E+02 0.012 27.6 11.1 14 36-49 25-38 (1355)
148 CHL00196 psbY photosystem II p 33.6 77 0.0017 18.1 3.0 22 84-105 5-26 (36)
149 PF05977 MFS_3: Transmembrane 33.1 4.3E+02 0.0094 25.1 11.2 10 38-47 257-266 (524)
150 PRK09584 tppB putative tripept 32.9 4.1E+02 0.009 24.8 12.7 22 168-189 403-424 (500)
151 PF11295 DUF3096: Protein of u 32.8 47 0.001 19.3 2.1 34 189-222 1-34 (39)
152 PRK02251 putative septation in 32.8 1.7E+02 0.0038 20.4 5.6 55 149-224 31-85 (87)
153 TIGR02840 spore_YtaF putative 32.8 60 0.0013 26.6 3.6 47 177-223 32-80 (206)
154 PRK11469 hypothetical protein; 32.6 42 0.0009 27.2 2.6 43 181-223 43-86 (188)
155 PF04342 DUF486: Protein of un 32.4 16 0.00034 26.5 0.1 28 22-49 79-106 (108)
156 PRK02237 hypothetical protein; 32.0 22 0.00048 25.9 0.8 30 22-51 76-105 (109)
157 PF04718 ATP-synt_G: Mitochond 31.8 46 0.00099 24.1 2.5 35 4-38 66-100 (103)
158 COG5336 Uncharacterized protei 31.0 1.5E+02 0.0033 21.7 4.9 13 187-199 54-66 (116)
159 PRK00159 putative septation in 31.0 1.9E+02 0.0041 20.3 5.4 56 149-224 30-85 (87)
160 PF15345 TMEM51: Transmembrane 31.0 40 0.00087 28.1 2.3 26 209-234 66-91 (233)
161 COG4854 Predicted membrane pro 30.6 1.6E+02 0.0035 21.6 5.0 50 34-109 73-122 (126)
162 TIGR00803 nst UDP-galactose tr 29.8 41 0.00089 27.6 2.2 45 181-225 7-51 (222)
163 PF02694 UPF0060: Uncharacteri 29.4 24 0.00051 25.7 0.6 30 22-51 74-103 (107)
164 PRK15432 autoinducer 2 ABC tra 29.3 1.7E+02 0.0038 26.1 6.2 19 206-224 288-306 (344)
165 PF13038 DUF3899: Domain of un 29.1 72 0.0015 22.2 3.1 21 205-225 3-23 (92)
166 PF06123 CreD: Inner membrane 28.9 4.7E+02 0.01 24.2 10.6 29 82-110 348-376 (430)
167 PF12832 MFS_1_like: MFS_1 lik 28.9 1.6E+02 0.0036 19.7 4.7 45 154-198 10-54 (77)
168 PRK07946 putative monovalent c 28.9 2.9E+02 0.0064 21.8 7.2 19 154-172 31-49 (163)
169 TIGR01299 synapt_SV2 synaptic 28.2 6.2E+02 0.013 25.3 16.0 42 90-132 601-642 (742)
170 PRK12650 putative monovalent c 28.1 7E+02 0.015 25.9 11.9 14 210-223 892-905 (962)
171 PRK10110 bifunctional PTS syst 27.4 2E+02 0.0043 27.5 6.5 124 15-179 298-425 (530)
172 PF06123 CreD: Inner membrane 27.1 5.1E+02 0.011 24.0 12.9 121 86-222 301-421 (430)
173 TIGR02230 ATPase_gene1 F0F1-AT 26.8 1.1E+02 0.0025 22.0 3.7 32 190-222 57-88 (100)
174 PF07123 PsbW: Photosystem II 26.5 89 0.0019 23.8 3.2 30 81-110 102-131 (138)
175 PF05961 Chordopox_A13L: Chord 26.4 1.1E+02 0.0023 20.2 3.2 20 207-226 5-24 (68)
176 COG4858 Uncharacterized membra 26.3 3.6E+02 0.0077 21.9 9.4 24 154-177 130-153 (226)
177 PRK00052 prolipoprotein diacyl 25.7 56 0.0012 28.0 2.4 46 180-225 208-258 (269)
178 PF06298 PsbY: Photosystem II 25.5 1.4E+02 0.003 17.1 3.1 22 84-105 5-26 (36)
179 COG2917 Intracellular septatio 24.7 1.8E+02 0.0038 23.3 4.7 14 203-216 77-90 (180)
180 PRK09579 multidrug efflux prot 24.6 2.5E+02 0.0054 29.2 7.1 31 190-221 882-912 (1017)
181 PF02659 DUF204: Domain of unk 24.5 81 0.0018 20.4 2.5 39 178-216 26-64 (67)
182 PRK11010 ampG muropeptide tran 24.5 5.8E+02 0.012 23.7 14.8 20 205-224 382-401 (491)
183 PRK10255 PTS system N-acetyl g 24.3 1.2E+02 0.0025 29.8 4.5 121 15-176 237-362 (648)
184 PRK11715 inner membrane protei 24.0 5.9E+02 0.013 23.7 12.4 45 86-134 307-351 (436)
185 TIGR00966 3a0501s07 protein-ex 23.4 2.7E+02 0.0058 23.4 6.1 41 177-217 122-162 (246)
186 COG4736 CcoQ Cbb3-type cytochr 23.4 79 0.0017 20.4 2.1 24 209-232 15-38 (60)
187 TIGR00905 2A0302 transporter, 23.3 6E+02 0.013 23.5 10.2 42 185-227 395-437 (473)
188 PRK02935 hypothetical protein; 23.0 2.4E+02 0.0053 20.5 4.7 24 208-231 44-67 (110)
189 PRK12405 electron transport co 22.2 4.8E+02 0.01 21.9 11.6 47 84-134 40-86 (231)
190 PRK13022 secF preprotein trans 21.9 3E+02 0.0066 23.8 6.2 44 176-220 150-193 (289)
191 COG4147 DhlC Predicted symport 21.8 4.1E+02 0.0089 25.1 7.1 64 164-227 434-509 (529)
192 TIGR00544 lgt prolipoprotein d 21.7 5.1E+02 0.011 22.3 7.5 22 204-225 246-267 (278)
193 KOG2629 Peroxisomal membrane a 21.7 1.4E+02 0.003 25.9 3.9 33 78-110 79-111 (300)
194 TIGR02004 PTS-IIBC-malX PTS sy 21.6 2.6E+02 0.0056 26.6 6.1 123 15-178 289-415 (517)
195 PF11872 DUF3392: Protein of u 21.3 2.1E+02 0.0047 20.8 4.3 19 88-106 22-40 (106)
196 PRK11715 inner membrane protei 21.2 6.7E+02 0.015 23.3 10.2 29 82-110 354-382 (436)
197 PF11022 DUF2611: Protein of u 20.8 32 0.00069 23.1 -0.0 29 197-225 5-34 (71)
198 PRK09577 multidrug efflux prot 20.5 3.2E+02 0.007 28.5 7.0 31 190-221 903-933 (1032)
199 PF08693 SKG6: Transmembrane a 20.4 78 0.0017 18.6 1.5 13 211-223 22-34 (40)
200 TIGR01998 PTS-II-BC-nag PTS sy 20.3 3.9E+02 0.0084 25.1 6.9 29 150-178 349-377 (476)
201 COG4956 Integral membrane prot 20.3 6.1E+02 0.013 22.5 9.1 18 160-177 118-135 (356)
202 PF01350 Flavi_NS4A: Flaviviru 20.3 4.1E+02 0.009 20.5 8.2 55 166-224 62-116 (144)
203 KOG2533 Permease of the major 20.2 7.4E+02 0.016 23.4 9.3 42 183-224 177-226 (495)
204 PF06946 Phage_holin_5: Phage 20.1 3.3E+02 0.0072 19.3 6.8 56 170-225 22-81 (93)
205 PRK13240 pbsY photosystem II p 20.1 1.8E+02 0.0039 17.1 3.0 21 84-104 5-25 (40)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=8.7e-26 Score=200.27 Aligned_cols=226 Identities=29% Similarity=0.580 Sum_probs=164.4
Q ss_pred CCccHHHHHHHHHHHHHh--------------------------------HHHhc------cccccCcceeehhhhhhhh
Q 046895 4 PKLNLKILFQAFLCGLFG--------------------------------LEKLG------IRTRAGKAKVLGSLIGIGG 45 (275)
Q Consensus 4 ~~~~~~~~~~~~~~g~~g--------------------------------l~~~~------~~e~~s~~~~~~~~l~~~G 45 (275)
|+.+++++..++++|+++ +++++ +|||+++++++|++++++|
T Consensus 71 ~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~G 150 (358)
T PLN00411 71 PPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIG 150 (358)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHH
Confidence 445688888888888766 77777 6999999999999999999
Q ss_pred hhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHH
Q 046895 46 AMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMG 125 (275)
Q Consensus 46 v~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~ 125 (275)
+.++..+++........+. +.+.............+...|++++++++++||+|+++.|+..+++++....+++++.++
T Consensus 151 v~ll~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~ 229 (358)
T PLN00411 151 ALVVIFYHGPRVFVASSPP-YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCV 229 (358)
T ss_pred HHHHHHccCcccccccccc-cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHH
Confidence 9998754332110000000 000000000011122345779999999999999999999999888877556677888777
Q ss_pred HHHHHHHHHHhcc-CccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCcc
Q 046895 126 AIQAVVFALCMEK-DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKL 204 (275)
Q Consensus 126 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~ 204 (275)
.+...+..+..+. +...|........+.+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~l 308 (358)
T PLN00411 230 SIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSL 308 (358)
T ss_pred HHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCC
Confidence 7777666665443 2222322122234446677764 6789999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHhhhccccccc
Q 046895 205 HLGSILGATLIVCGLYAVLWGKGKEMK 231 (275)
Q Consensus 205 s~~~~iG~~li~~G~~l~~~~~~~~~~ 231 (275)
++.+++|+++|+.|+++..+.++++.+
T Consensus 309 t~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 309 YLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999876555433
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.89 E-value=3.7e-22 Score=174.44 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=154.8
Q ss_pred CCCCccHHHHHHHHHHHHHh--------------------------------HHHhccccccCcceeehhhhhhhhhhhh
Q 046895 2 SRPKLNLKILFQAFLCGLFG--------------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMIL 49 (275)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~g--------------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li 49 (275)
++++.+++++.+++..|+++ ++++++|||++++++.+++++++|+++.
T Consensus 56 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 56 KRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 45667888999988888888 9999999999999999999999999875
Q ss_pred hhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhh--hCCccchHHHHHHHHHHH
Q 046895 50 TFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSE--EYPCQFSSTALMCVMGAI 127 (275)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i 127 (275)
.. .+.+....|++++++|+++|++|.++.|+..+ +.++ ...+.+++.++++
T Consensus 136 ~~--------------------------~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~ 188 (302)
T TIGR00817 136 SD--------------------------TELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDK-TNLYAYISIMSLF 188 (302)
T ss_pred cC--------------------------CcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-ccHHHHHHHHHHH
Confidence 31 11123457999999999999999999999887 6777 8999999999999
Q ss_pred HHHHHHHHhccCccc---cch-----hhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHH
Q 046895 128 QAVVFALCMEKDWSQ---WKL-----GWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLI 199 (275)
Q Consensus 128 ~~~~~~~~~~~~~~~---~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li 199 (275)
.+.|+....+..... +.. .....+...+..++......+.++++++++.++++++++.+++|++++++++++
T Consensus 189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~ 268 (302)
T TIGR00817 189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF 268 (302)
T ss_pred HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence 999888765431110 000 000111112222222233333466689999999999999999999999999999
Q ss_pred hcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 200 LDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 200 ~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
+||++++.+++|+++++.|++++.+.|+
T Consensus 269 lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 269 FGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986543
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.89 E-value=1.6e-21 Score=170.24 Aligned_cols=183 Identities=20% Similarity=0.222 Sum_probs=140.5
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||++++++++++++++|++++...+ . +.......|++++++++++|+.|.
T Consensus 103 l~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~-~----------------------~~~~~~~~G~~l~l~aal~~a~~~ 159 (299)
T PRK11453 103 LGAFTFGERLQGKQLAGIALAIFGVLVLIEDS-L----------------------NGQHVAMLGFMLTLAAAFSWACGN 159 (299)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-C----------------------CCcchhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999886210 0 111233579999999999999999
Q ss_pred HHHHhhhhhCCcc--chHHHHHHHHHHHHHHHHHHHhccCc---cccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895 102 VIQAKMSEEYPCQ--FSSTALMCVMGAIQAVVFALCMEKDW---SQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR 176 (275)
Q Consensus 102 v~~k~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~ 176 (275)
++.|+..++.+.. .....+.+.++.+.........+.+. ..+...+...|+.++++++++++++|.+|++++++.
T Consensus 160 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~ 239 (299)
T PRK11453 160 IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRY 239 (299)
T ss_pred HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999986654431 22334444444433333333333211 111122234577799999999999999999999999
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
++.+++.+.+++|+++.+++++++||++++.+++|++++++|+++..+.++
T Consensus 240 ~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 240 ETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999998876543
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.88 E-value=2.2e-21 Score=168.71 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=142.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++.+ +|||+++++++|++++++|++++...+ ..+....|++++++++++||.|.
T Consensus 113 la~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~-------------------------~~~~~~~G~l~~l~a~~~~a~~~ 166 (292)
T PRK11272 113 FSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG-------------------------NLSGNPWGAILILIASASWAFGS 166 (292)
T ss_pred HHHH-hcccCchhHHHHHHHHHHhHHHHhcCc-------------------------ccccchHHHHHHHHHHHHHHHHH
Confidence 6664 699999999999999999999875210 01133579999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA 181 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~ 181 (275)
+..|+..+. ++ ...+.+++.++++...++....+..... ..+...|..+++++++++.++|.+|++++++.+++++
T Consensus 167 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~ 242 (292)
T PRK11272 167 VWSSRLPLP-VG-MMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALA 242 (292)
T ss_pred HHHHhcCCC-cc-hHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 999997543 33 5567788888888777766654332111 1223457778999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
+++.+++|++++++++++++|++++.+++|+++++.|+++..+.+
T Consensus 243 s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 243 TSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986643
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.88 E-value=1.7e-21 Score=169.62 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=134.3
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||+++++++|++++++|++++...+.. . .+ . ....+......|++++++|+++||+|+
T Consensus 108 l~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~-~-~~------------~-~~~~~~~~~~~G~~~~l~aa~~~A~~~ 172 (295)
T PRK11689 108 FAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNG-L-SL------------A-ELINNIASNPLSYGLAFIGAFIWAAYC 172 (295)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhHhheecCCcc-c-hh------------h-hhhhccccChHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998631100 0 00 0 000011123569999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA 181 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~ 181 (275)
++.|+..++.++ ... .+..+.+.+.+...+.+.. .... +...|..+++.++ .++++|.+|++++++.+++++
T Consensus 173 v~~k~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~--~~~~-~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~ 244 (295)
T PRK11689 173 NVTRKYARGKNG-ITL---FFILTALALWIKYFLSPQP--AMVF-SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLL 244 (295)
T ss_pred HHHhhccCCCCc-hhH---HHHHHHHHHHHHHHHhcCc--cccC-CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHH
Confidence 999998766665 443 2233333333333332211 1111 1234666666674 789999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
+.+.+++|+++++++++++||++++.+++|+++++.|+++.....
T Consensus 245 s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 245 ATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 999999999999999999999999999999999999998886544
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.87 E-value=6e-21 Score=163.11 Aligned_cols=169 Identities=24% Similarity=0.336 Sum_probs=141.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++.+++|||++++++++++++++|++++...+ +.+....|++++++++++|+.+.
T Consensus 90 ~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-------------------------~~~~~~~G~~~~l~a~~~~a~~~ 144 (260)
T TIGR00950 90 LSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-------------------------NLSINPAGLLLGLGSGISFALGT 144 (260)
T ss_pred HHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-------------------------cccccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999985211 11244689999999999999999
Q ss_pred HHHHhhhhhCCcc-chHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 046895 102 VIQAKMSEEYPCQ-FSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLF 180 (275)
Q Consensus 102 v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~ 180 (275)
++.|+..++.++. .....+++.++.+++.+.....++.. .. +...|..+++.+++++.++|.+|++++++.++++
T Consensus 145 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 220 (260)
T TIGR00950 145 VLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA 220 (260)
T ss_pred HHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 9999998776641 34455678888888887776654322 11 2345666888899899999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGL 219 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~ 219 (275)
++.+.+++|++++++++++++|+++..+++|+++++.|+
T Consensus 221 ~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 221 ASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999986
No 7
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.86 E-value=1.4e-20 Score=164.05 Aligned_cols=190 Identities=18% Similarity=0.186 Sum_probs=152.3
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|+|+++.+++|++++++|++++...|... +.++.+..+...|++++++++++||+++
T Consensus 122 LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~-----------------~~~~~~~~~~i~GDll~l~~a~lya~~n 184 (334)
T PF06027_consen 122 LSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS-----------------GSDSSSGSNPILGDLLALLGAILYAVSN 184 (334)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc-----------------cccCCCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987543211 0111344578999999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccC-ccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKD-WSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLF 180 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~ 180 (275)
++.++..++.+. .....+..+++.++..+...+.+.. .....+.. ..+. +.....++..+.|.+....++..+|+.
T Consensus 185 V~~E~~v~~~~~-~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~-~~~~-~~v~~~~~lf~~y~l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 185 VLEEKLVKKAPR-VEFLGMLGLFGFIISGIQLAILERSGIESIHWTS-QVIG-LLVGYALCLFLFYSLVPIVLRMSSATF 261 (334)
T ss_pred HHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh-hhHH-HHHHHHHHHHHHHHHHHHHHHhCccce
Confidence 999999998887 8888999999999988888766543 22222222 1122 222233466677888889999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccc
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK 231 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~ 231 (275)
.++-..+..+++++++++++|+++++..++|.++|++|.+++...+.+..+
T Consensus 262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 999999999999999999999999999999999999999999876554433
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.85 E-value=6.8e-20 Score=159.44 Aligned_cols=172 Identities=16% Similarity=0.101 Sum_probs=131.1
Q ss_pred HhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHH
Q 046895 24 KLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVI 103 (275)
Q Consensus 24 ~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~ 103 (275)
.++-+|++++ ..++.++++|++++...+ . +.......|++++++++++|++|.+.
T Consensus 112 ~ll~~~~~~~--~~~~~i~~~Gv~li~~~~-~----------------------~~~~~~~~G~ll~l~aa~~~a~~~v~ 166 (293)
T PRK10532 112 ALFSSRRPVD--FVWVVLAVLGLWFLLPLG-Q----------------------DVSHVDLTGAALALGAGACWAIYILS 166 (293)
T ss_pred HHHhcCChHH--HHHHHHHHHHHheeeecC-C----------------------CcccCChHHHHHHHHHHHHHHHHHHH
Confidence 3334466654 456677899998875211 0 01113457999999999999999999
Q ss_pred HHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhh
Q 046895 104 QAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASI 183 (275)
Q Consensus 104 ~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~ 183 (275)
.|+..++.++ ... .+..++++++..++....... ..+ +...|..++++|++++.++|.+|++++++.++++++.
T Consensus 167 ~r~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~ 240 (293)
T PRK10532 167 GQRAGAEHGP-ATV-AIGSLIAALIFVPIGALQAGE-ALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGT 240 (293)
T ss_pred HHHHhccCCc-hHH-HHHHHHHHHHHHHHHHHccCc-ccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence 9999777666 554 455566666666665543321 111 1223445678999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 184 FNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 184 ~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
+.+++|+++.+++++++||++++.+++|++++++|++...+..
T Consensus 241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999986554
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=7.8e-20 Score=158.17 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=126.5
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||+++++++|+.++++|++++...+. ......|..++++++++|+.|.
T Consensus 106 ~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-------------------------~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 106 WATLTLGETLSPLAWLGILIITLGLLVLGLSRF-------------------------AQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-------------------------cccchhHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999998852110 0122357889999999999999
Q ss_pred HHHHhhhhhCCccchH---HHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895 102 VIQAKMSEEYPCQFSS---TALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP 178 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~ 178 (275)
++.|+..++.++.... ..+.+...++...+.....+.. .+.. ....++.+++.+.+.+.++|.+|++++++.++
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a 237 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMFP-YARQILPSATLGGLMIGGAYALVLWAMTRLPV 237 (281)
T ss_pred hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9998875444431221 1222222211111111111111 1111 12234556777888999999999999999999
Q ss_pred eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Q 046895 179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYA 221 (275)
Q Consensus 179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l 221 (275)
++++.+.+++|+++.+++++++||++++.+++|++++++|+++
T Consensus 238 ~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 238 ATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred eEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999976
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.82 E-value=3.4e-19 Score=158.54 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=139.0
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||++++++++++++++|+++.... +.+..+.|++++++|+++|++++
T Consensus 157 ls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~--------------------------~~~~~~~G~~~~l~s~~~~a~~~ 210 (350)
T PTZ00343 157 LSILFLKQFLNLYAYLSLIPIVGGVALASVK--------------------------ELHFTWLAFWCAMLSNLGSSLRS 210 (350)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHheecc--------------------------cchhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998621 11245689999999999999999
Q ss_pred HHHHhhhhhCC------ccchHHHHHHHHHHHHHHHHHHHhccCc--cccc----hhhhhhHHHHHHHHHhhhHHHHHHH
Q 046895 102 VIQAKMSEEYP------CQFSSTALMCVMGAIQAVVFALCMEKDW--SQWK----LGWNIRLLTVAYSGIVASGLMVTLI 169 (275)
Q Consensus 102 v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~ 169 (275)
++.|+..++.+ +......+..++++++++|+.++.+... ..+. ......+..+++ .++.+++.|++|
T Consensus 211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~ 289 (350)
T PTZ00343 211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLY 289 (350)
T ss_pred HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHH
Confidence 99999877543 1144555667889999888877554311 1110 000111222333 345678889998
Q ss_pred HH----HHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 170 SW----CVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 170 ~~----a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
+. +++++++...++..+++|+++++++++++||++++.+++|+++++.|++++.+.
T Consensus 290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 84 999999999999999999999999999999999999999999999999998764
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.79 E-value=5.7e-18 Score=147.61 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=119.4
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||++++++++++++++|++++...+ ++. .+++++++++||+|.
T Consensus 116 ~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~--------------------------~~~----~~~~l~aa~~~a~~~ 165 (296)
T PRK15430 116 LGMIFLGERFRRMQWLAVILAICGVLVQLWTF--------------------------GSL----PIIALGLAFSFAFYG 165 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc--------------------------CCc----cHHHHHHHHHHHHHH
Confidence 88999999999999999999999999985210 000 146888999999999
Q ss_pred HHHHhhhhhCCc-cchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 046895 102 VIQAKMSEEYPC-QFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLF 180 (275)
Q Consensus 102 v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~ 180 (275)
+..|+...+... ....+.+.+.++.....+. .......+.......+..+.+.++ .+.++|.+|++++++.++++
T Consensus 166 i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~ 241 (296)
T PRK15430 166 LVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLST 241 (296)
T ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHH
Confidence 999987432111 0122233333333222111 111111111111111232344454 67899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
++.+.+++|+++.++++++++|++++.+++|+++++.|+.+...
T Consensus 242 ~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 242 LGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888877653
No 12
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.71 E-value=6.2e-16 Score=126.30 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=149.6
Q ss_pred CCccHHHHHHHHHHHHHh-----------------------------HHHhccccccCcceeehhhhhhhhhhhhhhhcC
Q 046895 4 PKLNLKILFQAFLCGLFG-----------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRG 54 (275)
Q Consensus 4 ~~~~~~~~~~~~~~g~~g-----------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~ 54 (275)
.|+++++++.+..-|..- ++.+-.| +.+..+++.+++.|+.++.. ++
T Consensus 64 ~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~sR---r~~d~vwvaLAvlGi~lL~p-~~ 139 (292)
T COG5006 64 RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSSR---RLRDFVWVALAVLGIWLLLP-LG 139 (292)
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhcc---chhhHHHHHHHHHHHHhhee-cc
Confidence 577888888777766544 2222222 33456788889999998852 11
Q ss_pred ccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHH
Q 046895 55 VEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFAL 134 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 134 (275)
+ +...-+..|..+++.++.||+.|.+..||..+..+. ..-+...+.+++++..|+..
T Consensus 140 ~----------------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~ 196 (292)
T COG5006 140 Q----------------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGA 196 (292)
T ss_pred C----------------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhh
Confidence 1 233456799999999999999999999999876676 77788999999999999887
Q ss_pred HhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHH
Q 046895 135 CMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATL 214 (275)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~l 214 (275)
....+ . .........-+..+++++++.|.+-..++++++....+.+++++|.++++.|++++||++|+.||+|+..
T Consensus 197 ~~ag~--~--l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ 272 (292)
T COG5006 197 AQAGP--A--LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAA 272 (292)
T ss_pred hhcch--h--hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 54332 1 1111223334667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc
Q 046895 215 IVCGLYAVLWGKGK 228 (275)
Q Consensus 215 i~~G~~l~~~~~~~ 228 (275)
|+.+..-.....+|
T Consensus 273 ViaAsaG~~lt~~~ 286 (292)
T COG5006 273 VIAASAGSTLTARK 286 (292)
T ss_pred HHHHHhccccccCC
Confidence 99888755544333
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.70 E-value=1e-15 Score=132.24 Aligned_cols=173 Identities=23% Similarity=0.358 Sum_probs=133.0
Q ss_pred HHH-hccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcc-hhhHhHHHHHHHHHHHH
Q 046895 22 LEK-LGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGK-RFLGALFALGSCFGYAI 99 (275)
Q Consensus 22 l~~-~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~a~~~~a~ 99 (275)
+++ +++|||++++++.+++++++|++++...+.. ... ...|++++++++++|++
T Consensus 113 ~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~------------------------~~~~~~~g~~~~l~a~~~~a~ 168 (292)
T COG0697 113 LAVLLLLGERLSLLQILGILLALAGVLLILLGGGG------------------------GGILSLLGLLLALAAALLWAL 168 (292)
T ss_pred HHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 775 6679999999999999999999999732110 001 57899999999999999
Q ss_pred HHHHHHhhhhhCCccchHHH-HHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895 100 WLVIQAKMSEEYPCQFSSTA-LMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP 178 (275)
Q Consensus 100 ~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~ 178 (275)
+.+..|+.. +.++ ..... +.+. ............. .. . ......+..+.+.|++.+++++.+|++++++.++
T Consensus 169 ~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 241 (292)
T COG0697 169 YTALVKRLS-RLGP-VTLALLLQLL--LALLLLLLFFLSG-FG-A-PILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGA 241 (292)
T ss_pred HHHHHHHhc-CCCh-HHHHHHHHHH--HHHHHHHHHHhcc-cc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999887 4454 44444 3333 1111111111111 11 1 1112346668888988888999999999999999
Q ss_pred eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
..++.+.+++|+++.++++++++|+++..+++|+++++.|+++...+
T Consensus 242 ~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 242 SLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998765
No 14
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.68 E-value=7.5e-16 Score=112.99 Aligned_cols=135 Identities=21% Similarity=0.122 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895 87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV 166 (275)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (275)
.+++++++++++...++.|-..++.++ ...+..|.++..+++..+.+..++.. .....+...|..+.+.|+ ++++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp-~~At~IRtiVi~~~l~~v~~~~g~~~-~~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDP-DFATTIRTIVILIFLLIVLLVTGNWQ-AGGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHHHHHHHHhcCcee-cccccCcceehhhhHHHH-HHHHHH
Confidence 588999999999999999999998998 88899999999888888887766422 221223456777777785 999999
Q ss_pred HHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 167 TLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 167 ~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
.+|+++++...++++..+..+.|+++++++++++||++|..+|+|+.+|++|++++.+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999999988654
No 15
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=121.68 Aligned_cols=172 Identities=13% Similarity=0.188 Sum_probs=139.6
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||+++.|+++++++.+|+...+...++ - -+.++.-+++|+.|.
T Consensus 115 lG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~--------------------------l----pwval~la~sf~~Yg 164 (293)
T COG2962 115 LGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS--------------------------L----PWVALALALSFGLYG 164 (293)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC--------------------------C----cHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988653322 1 256777789999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA 181 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~ 181 (275)
..-|+. +.++ .+-....++.-....+.+.+..+...+-....+...++.+.+.|. .++++..+|..+-++++-+..
T Consensus 165 l~RK~~--~v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~ 240 (293)
T COG2962 165 LLRKKL--KVDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTL 240 (293)
T ss_pred HHHHhc--CCch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHH
Confidence 998876 3666 777777777777777777766654332011123345665677776 789999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
++++|.+|..-.++++++++|+++..+++..+++-.|.+++..+.-
T Consensus 241 G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 241 GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876543
No 16
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.63 E-value=3e-14 Score=124.62 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=147.0
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++.+++|+|+++++++++++..+|+++....+..+.. ..+........|+++.+++.++.|+..
T Consensus 107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------------~~~~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS----------------SSNSSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc----------------ccccccccchhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998764432110 111111223349999999999999999
Q ss_pred HHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHH--hccCccccch--hhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895 102 VIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALC--MEKDWSQWKL--GWNIRLLTVAYSGIVASGLMVTLISWCVRTR 176 (275)
Q Consensus 102 v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~ 176 (275)
+++++..++.+ +....+++..+++.+..++..+. .+...+.++. ..+..+..++... +...+++...++..++.
T Consensus 171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~ 249 (303)
T PF08449_consen 171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKF 249 (303)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 99999987554 22678888888988888877776 3332222221 2222333334444 46778888888999999
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
++...+++..+..+++++++++++++++++.+|+|.++++.|+.+..+.++|+
T Consensus 250 ~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 250 SALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999998876654
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.63 E-value=9.1e-17 Score=132.04 Aligned_cols=190 Identities=13% Similarity=0.033 Sum_probs=149.1
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++|.++|||+++...++..+.+.|+++++. .+....-. ....+.+.......|...++.++++-|...
T Consensus 140 faw~~LkE~~t~~eaL~s~itl~GVVLIvR--PpFlFG~~----------t~g~~~s~~~~~~~gt~aai~s~lf~asvy 207 (346)
T KOG4510|consen 140 FAWAFLKEPFTKFEALGSLITLLGVVLIVR--PPFLFGDT----------TEGEDSSQVEYDIPGTVAAISSVLFGASVY 207 (346)
T ss_pred HHHHHHcCCCcHHHHHHHHHhhheEEEEec--CCcccCCC----------ccccccccccccCCchHHHHHhHhhhhhHH
Confidence 899999999999999999999999999972 32221100 011111222455677899999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA 181 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~ 181 (275)
++.|+..++.+. .....+..+++++..++.....+. ..++... .+|+.++.+|+ .+.+++.+.+.++|+-.+..+
T Consensus 208 IilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~--~~lP~cg-kdr~l~~~lGv-fgfigQIllTm~lQiErAGpv 282 (346)
T KOG4510|consen 208 IILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA--VQLPHCG-KDRWLFVNLGV-FGFIGQILLTMGLQIERAGPV 282 (346)
T ss_pred HHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc--eecCccc-cceEEEEEehh-hhhHHHHHHHHHhhhhccCCe
Confidence 999999998887 666677777777777766665542 2333333 45665778888 567999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895 182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK 228 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~ 228 (275)
+++.+.+.+++.+|.+++++|.||++.|.|+++++...+.....|..
T Consensus 283 aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa 329 (346)
T KOG4510|consen 283 AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA 329 (346)
T ss_pred ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887665443
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.60 E-value=6.2e-15 Score=111.46 Aligned_cols=125 Identities=23% Similarity=0.317 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 046895 95 FGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVR 174 (275)
Q Consensus 95 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~ 174 (275)
++||.+.++.|+..++.|+ .....+++..+.+ ..+...+..... ....+...+..+++.+++++++++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISP-LSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCCH-HHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4789999999999999888 9999999999998 666666554432 12222344666788888788999999999999
Q ss_pred cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 175 TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 175 ~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
+.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998864
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.58 E-value=7.6e-15 Score=126.20 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=148.5
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++.++..||+++.+++++.+++.|+++++++|+.. .++.......+|+++++++++.||+|.
T Consensus 202 la~if~~e~ft~sKllav~~si~GViiVt~~~s~~------------------~~~~~a~~~llG~llaL~sA~~YavY~ 263 (416)
T KOG2765|consen 202 LAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ------------------NSDLPASRPLLGNLLALLSALLYAVYT 263 (416)
T ss_pred HHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc------------------cccCCccchhHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999998765421 112344567899999999999999999
Q ss_pred HHHHhhhhhCCccchHHHH---HHHHHHHHHHHHHHHhcc-CccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 102 VIQAKMSEEYPCQFSSTAL---MCVMGAIQAVVFALCMEK-DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
++.|+-..+.+.++.+..+ ..++..+++.|..++... ..+.++.++......++..++++++++-++|.+|+-..+
T Consensus 264 vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs 343 (416)
T KOG2765|consen 264 VLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTS 343 (416)
T ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhcc
Confidence 9999877665322443333 333444555544443322 234455555555666778889999999999999999999
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
|.++++-+.++.+.+++...++-+.++|+.+++|.+.|++|.+++++...
T Consensus 344 ~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 344 PLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred chhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 99999999999999999999999999999999999999999999876543
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.57 E-value=1e-13 Score=120.31 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=129.0
Q ss_pred HHHhccccccCcce----eehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAK----VLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGY 97 (275)
Q Consensus 22 l~~~~~~e~~s~~~----~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~ 97 (275)
.+.+++||+.++++ .+|++++++|++++...+.+. ..+.+..+...|.+++++++++|
T Consensus 103 ~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~------------------~~~~~~~~~~~Gi~~~l~sg~~y 164 (290)
T TIGR00776 103 FGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS------------------AGIKSEFNFKKGILLLLMSTIGY 164 (290)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc------------------cccccccchhhHHHHHHHHHHHH
Confidence 67889999999999 999999999999885322110 00000023467999999999999
Q ss_pred HHHHHHHHhhhhhCCccchHHHHHHH---HHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 046895 98 AIWLVIQAKMSEEYPCQFSSTALMCV---MGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVR 174 (275)
Q Consensus 98 a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~ 174 (275)
++|.+..|.. +.++ ....+.++. +++++..... . .. .++ .... .+..+..|++ .++++.+|..+.+
T Consensus 165 ~~~~~~~~~~--~~~~-~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~--~~~~-~~~~~~~Gi~-~~ia~~~y~~~~~ 233 (290)
T TIGR00776 165 LVYVVVAKAF--GVDG-LSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL--KKYA-ILLNILPGLM-WGIGNFFYLFSAQ 233 (290)
T ss_pred HHHHHHHHHc--CCCc-ceehhHHHHHHHHHHHHHHHHH--h-cc-cch--HHHH-HHHHHHHHHH-HHHHHHHHHHHcc
Confidence 9999999976 3666 666444443 3333222221 1 10 111 2222 3334447887 6999999999999
Q ss_pred -cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhh----hhHHHHHHHHHHhhh
Q 046895 175 -TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSI----LGATLIVCGLYAVLW 224 (275)
Q Consensus 175 -~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~----iG~~li~~G~~l~~~ 224 (275)
+.+++.++.+.+.+|+.+.++++++++|+.++.++ +|+++++.|+++...
T Consensus 234 ~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 234 PKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 999999999998754
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.51 E-value=3.3e-13 Score=115.18 Aligned_cols=143 Identities=10% Similarity=0.101 Sum_probs=98.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|||++++++++++++++|++++...++ +. .+++++++++|+.|.
T Consensus 113 la~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~--------------------------~~----~~~~l~aa~~~a~~~ 162 (256)
T TIGR00688 113 LGRVFLKERISRFQFIAVIIATLGVISNIVLKG--------------------------SL----PWEALVLAFSFTAYG 162 (256)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC--------------------------Cc----hHHHHHHHHHHHHHH
Confidence 889999999999999999999999998752110 01 146789999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA 181 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~ 181 (275)
+..|+..++ +. ..... ..+.......+..+..+. ...........|..+++.|++ +.++|.+|++++++.+++++
T Consensus 163 i~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~ 237 (256)
T TIGR00688 163 LIRKALKNT-DL-AGFCL-ETLSLMPVAIYYLLQTDF-ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLL 237 (256)
T ss_pred HHHhhcCCC-Cc-chHHH-HHHHHHHHHHHHHHHhcc-CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHH
Confidence 999987542 32 22111 112222222211111111 111111112357767777875 88999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 046895 182 SIFNPLMLVVVAILSSLI 199 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li 199 (275)
+++.|++|+++.+++++.
T Consensus 238 s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 238 GLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999764
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.44 E-value=3.3e-12 Score=111.41 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=111.7
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccc--hhhhhhHHHHHHHHH
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWK--LGWNIRLLTVAYSGI 159 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~ 159 (275)
+...|.+++++++++|+...+..|.. .+.++ ....++|+.++.++..+......+ ..... ......+. ....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~-~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPA-DEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIF-MLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCH-HHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHH-HHHHHH
Confidence 56689999999999999999999875 56787 899999999998877766544322 11110 00112222 334566
Q ss_pred hhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 160 VASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
+..+..+.++++++++.+++.++++.++.|+++.++++++++|++++.+|+|+++.++|+++...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999998753
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.41 E-value=7.7e-12 Score=101.46 Aligned_cols=182 Identities=19% Similarity=0.115 Sum_probs=146.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++..+.|++.+|++.+++++.++|+.+... +.. ...+....+..+|.++.+++-..-+...
T Consensus 128 lGVl~~~KsY~w~kY~cVL~IV~GValFmY-K~~------------------Kv~g~e~~t~g~GElLL~lSL~mDGlTg 188 (337)
T KOG1580|consen 128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMY-KEN------------------KVGGAEDKTFGFGELLLILSLAMDGLTG 188 (337)
T ss_pred eehhhhcccccHHHHHHHHHHHHHHHHhhc-ccc------------------ccCCCcccccchHHHHHHHHHHhcccch
Confidence 889999999999999999999999999854 321 1112445578899999999999999988
Q ss_pred HHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHHhccCcc--ccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895 102 VIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALCMEKDWS--QWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP 178 (275)
Q Consensus 102 v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~ 178 (275)
..+.+...... ...+++....+.+.+.+....++.+..+. .+....+..|+-+..+++ ++.+++++.+.-+...+|
T Consensus 189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgP 267 (337)
T KOG1580|consen 189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGP 267 (337)
T ss_pred hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCC
Confidence 88887766442 22567888888999888877777765331 122222344555777777 889999999999999999
Q ss_pred eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
...+++....-+|+++.++++++++++..||+|..+++.|...=.
T Consensus 268 LtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 268 LTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred eeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999999999999999999999987743
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.38 E-value=9.3e-12 Score=106.27 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=108.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCc---cccchhhhhh-HHHHHHHHHh
Q 046895 85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDW---SQWKLGWNIR-LLTVAYSGIV 160 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~g~~ 160 (275)
.|.++.++++++|+...+..|.. .+.++ .++.++|++++++++.+......+.. ..++...... +..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~-~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLPA-TDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCCH-HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence 48899999999999999999984 56787 99999999999888766654433211 1111111111 333445555
Q ss_pred hhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 161 ASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
...+.+.++++++++++++.++++.++.|+++.++++++++|+++..+++|.++.++|+++...
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999987654
No 25
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.32 E-value=3e-11 Score=100.19 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=128.9
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++++|+|.+.+|..++.+..+|+++.++.++.+...- .++-+..+..++...+..|..+..+|-+.-|...
T Consensus 108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~-------~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg 180 (330)
T KOG1583|consen 108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSK-------LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG 180 (330)
T ss_pred HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhh-------hcccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988766544320 1111122233445567889999999999999999
Q ss_pred HHHHhhhhhCCcc-chHHHHHHHHHHHHHHHHHHHhccCc-ccc--------------chhhhhhHHHHHHHHHhhhHHH
Q 046895 102 VIQAKMSEEYPCQ-FSSTALMCVMGAIQAVVFALCMEKDW-SQW--------------KLGWNIRLLTVAYSGIVASGLM 165 (275)
Q Consensus 102 v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~l~~~g~~~~~~~ 165 (275)
++++...+++..+ -...++.. .+.+|..++.+.++ ++| ...-+..|+ .++..++....+
T Consensus 181 iyqE~~Y~kyGKh~~EalFytH----~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~-yLl~n~L~Qy~C 255 (330)
T KOG1583|consen 181 IYQETTYQKYGKHWKEALFYTH----FLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWV-YLLFNVLTQYFC 255 (330)
T ss_pred HHHHHHHHHhcCChHHHHHHHH----HhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHH-HHHHHHHHHHHH
Confidence 9888777765432 23444444 44445555444322 111 111122233 233222222222
Q ss_pred HHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 166 VTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 166 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
-=.-+..-...++..+++...+.-.++.+++.++++++++++.|+|..++++|.+++..
T Consensus 256 ikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 256 IKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22222333556788899999999999999999999999999999999999999999753
No 26
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.30 E-value=1.1e-11 Score=107.33 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=143.7
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
+++++.+|+.++..+..++....|+.+.+. .+...++.|...++++.+..+..+
T Consensus 126 ~~~~~~~~~~s~~~~lsL~piv~GV~ias~--------------------------~e~~fn~~G~i~a~~s~~~~al~~ 179 (316)
T KOG1441|consen 126 LSVLLLGKTYSSMTYLSLLPIVFGVAIASV--------------------------TELSFNLFGFISAMISNLAFALRN 179 (316)
T ss_pred HHHHHhCCCCcceEEEEEEEeeeeEEEeee--------------------------ccccccHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999874 233477899999999999999999
Q ss_pred HHHHhhhh----hCCccchHHHHHHHHHHHHHH-HHHHHhccCcc------ccchhhhhhHHHHHHHHHhhhHHHHHHHH
Q 046895 102 VIQAKMSE----EYPCQFSSTALMCVMGAIQAV-VFALCMEKDWS------QWKLGWNIRLLTVAYSGIVASGLMVTLIS 170 (275)
Q Consensus 102 v~~k~~~~----~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 170 (275)
++.++..+ +.++ ++...++..++.+.++ |+....+++.. .|... .+.+++..+ ...+-...-+
T Consensus 180 I~~~~ll~~~~~~~~~-~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~----~~~~~~~sv-~~f~~Nls~f 253 (316)
T KOG1441|consen 180 ILSKKLLTSKGESLNS-MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT----FLILLLNSV-LAFLLNLSAF 253 (316)
T ss_pred HHHHHhhhccccccCc-hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh----hHHHHHHHH-HHHHHHHHHH
Confidence 99999985 3566 8888888889998888 76665444322 22222 222333333 3344455667
Q ss_pred HHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccc
Q 046895 171 WCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK 231 (275)
Q Consensus 171 ~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~ 231 (275)
..+.+++|...++.....-+++++.++++++++.|+.+.+|+++.++|++++.+.|.++++
T Consensus 254 ~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 254 LVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 8999999999999999999999999999999999999999999999999999887665443
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.28 E-value=1.2e-10 Score=100.73 Aligned_cols=133 Identities=15% Similarity=0.079 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895 87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV 166 (275)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (275)
.++.++++++|+...++.|+..++.++ ...+++..+++...++...... ...++... ..++..+..+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD---FLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 478899999999999999987766443 3455566666666665554311 12233222 223334445555778889
Q ss_pred HHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 167 TLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 167 ~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
.++++++++.+++.++.+.++.|+++.++++++++|+++..+|+|.++++.|+++...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998764
No 28
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.27 E-value=3.8e-12 Score=104.40 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=139.4
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
+.|+++|.|.++.+..|+.+|++|++++++.|-. +.+.+++.+...|+++.++++-+||+.+
T Consensus 121 lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~------------------agd~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 121 LSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH------------------AGDRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred HHHHHHHHHHhhheeeeEEeEecceEEEEEeeec------------------cccccCCCCCccCcEEEEecceeeeecc
Confidence 8999999999999999999999999999753321 1223455677899999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA 181 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~ 181 (275)
++...+.++.|. ...+....+++++++.+-..+.........+.+ .....+. ..+...+-|.+....+|..+++..
T Consensus 183 v~EEflvkn~d~-~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~--~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~ 258 (336)
T KOG2766|consen 183 VSEEFLVKNADR-VELMGFLGLFGAIISAIQFIFERHHVSTLHWDS--AIFLYLR-FALTMFLLYSLAPILIKTNSATMF 258 (336)
T ss_pred ccHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHhhhccceeeEeehH--HHHHHHH-HHHHHHHHHHhhHHheecCCceEE
Confidence 999999999998 999999999999999998554333222222221 1221222 223444555555677788999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
++-....-.++.+. ..+|-+.+|...++...+..|.+++..
T Consensus 259 nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 259 NLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred EhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 99999999999888 668888999999999999999998843
No 29
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.24 E-value=3.1e-10 Score=89.06 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=109.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhh------CCccchHHHHHHHHHHHHHHHHHHHhccCccccchh---------hhhh
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEE------YPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLG---------WNIR 150 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~ 150 (275)
|.+++++|.++.+++.++.|+..++ ..++.++..+....+.+.+.+..++.+......... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999988776 223378888999999999999888876533111110 1133
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 151 LLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 151 ~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
+..++..|+ ...+.....+..+++.+|...++...+..+..+++++++++|++|+.+++|+++.++|.+++.+
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 443444455 4456667778999999999999999999999999999999999999999999999999988753
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.20 E-value=5.6e-10 Score=99.45 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=113.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhH
Q 046895 84 FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASG 163 (275)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (275)
..-++.+++.-++|+.+.++.|...+..-++....++|+.+++++++++.+..++... ++......+..+..+|++. .
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-H
Confidence 3557888999999999999999999876555999999999999999888776543211 1111122345566677766 5
Q ss_pred HHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHH------hcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 164 LMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLI------LDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li------~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
+.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|+++.++|+.++...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 667788999999999999999999999999999999 69999999999999999999887643
No 31
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.1e-09 Score=92.32 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=145.9
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++.++.|+|++..+.+...+.-.|+.+..+.+..+ ...+...++.+.|..+....-..=++-+
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-----------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn 188 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-----------------SSSKSGRENSPIGILLLFGYLLFDGFTN 188 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC-----------------CccccCCCCchHhHHHHHHHHHHHhhHH
Confidence 88999999999999999999999999887653221 1122334577899999999999999999
Q ss_pred HHHHhhhhh--CCccchHHHHHHHHHHHHHHHHHHHhccCccccchh--hhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 102 VIQAKMSEE--YPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLG--WNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 102 v~~k~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
..+.++.+. .+. ..++....+++++......+..+...+..... .+..++-+++... +.++++.+.++-+++.+
T Consensus 189 ~tQd~lf~~~k~s~-~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 189 ATQDSLFKKYKVSS-LHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFG 266 (327)
T ss_pred hHHHHHhccCCccH-hHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcc
Confidence 999888873 344 77888888888888776644433322222111 1222333555555 66789999999999999
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK 228 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~ 228 (275)
+...+.++.+.-++++.++.+.++.++++.||+|..+++.|+.+=...+++
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999986655444
No 32
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.14 E-value=2.2e-09 Score=81.45 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=94.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHH
Q 046895 85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGL 164 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (275)
.|+++.+++.++-+...++.|+..++.+. ...... . . ...... . . ....+++|++++++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~-~----~~~~~~--~---~---------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F-I----AALLAF--G---L---------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H-H----HHHHHH--h---c---------cHHHHHHHHHHHHH
Confidence 47889999999999999999998877654 332221 1 0 000000 0 0 11146778889999
Q ss_pred HHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHH--HhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 165 MVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL--ILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 165 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~l--i~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
++.+|.+++++.+.+.+..+....++++.+.++. +++|++|+.+++|+++|++|++++.+.++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999888888885 79999999999999999999999876444
No 33
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.14 E-value=2.1e-09 Score=90.82 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=121.4
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
+.++++|+|++++||+++.+.++|++++-..+...... +++.....++.......|.++.++++++-|+..
T Consensus 60 ~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~---------~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~ag 130 (244)
T PF04142_consen 60 FSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN---------SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAG 130 (244)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc---------ccccccccccccchhHhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999985422111000 000000111234567899999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHH-HHHHHHHHHHHHHHhccC-ccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCce
Q 046895 102 VIQAKMSEEYPCQFSSTALM-CVMGAIQAVVFALCMEKD-WSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPL 179 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~ 179 (275)
++.++..|+.+........+ .+.+.++.++...+.+.. ...........++ .+.-++..+.+=.+....+|+.+..
T Consensus 131 Vy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~--~~~~i~~~a~gGllva~v~KyadnI 208 (244)
T PF04142_consen 131 VYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW--VWIVIFLQAIGGLLVAFVLKYADNI 208 (244)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH--HHHHHHHHHHhhHHHHHHHHHHhHH
Confidence 99999999764334444443 445555555444333221 1111111111111 2222223333444556788999999
Q ss_pred ehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHH
Q 046895 180 FASIFNPLMLVVVAILSSLILDEKLHLGSILGATLI 215 (275)
Q Consensus 180 ~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li 215 (275)
.=+....+..+++.++++++++.+++....+|+.++
T Consensus 209 ~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 209 VKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 999999999999999999999999999999998753
No 34
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.14 E-value=6.8e-10 Score=82.75 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHH
Q 046895 119 ALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL 198 (275)
Q Consensus 119 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~l 198 (275)
.+++.++.+.......+..+..+.++......+..++..|++....++.++++++++.++ .+.++..+.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 467777777777766664432222222222334445666776667899999999999994 8889999999999999999
Q ss_pred HhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 199 ILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 199 i~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
+++|+++..+++|.+++++|++++.+.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999987543
No 35
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.12 E-value=2.2e-09 Score=93.45 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895 87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV 166 (275)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (275)
.+..++..+.|+...+..|...++.++ ....++|+.+++++.+++......... ....+.....+|++.....+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p-~~~~~~R~~~a~l~ll~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPP-LMMAGVRFLIAGILLLAFLLLRGHPLP-----TLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999988888888 999999999999888877654332211 12335545667776666778
Q ss_pred HHHHHHH-hcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 167 TLISWCV-RTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 167 ~~~~~a~-~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
.+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|.++.++|+.++...
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8888898 9999999999999999999999986 79999999999999999999887643
No 36
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.09 E-value=1.5e-09 Score=92.68 Aligned_cols=119 Identities=18% Similarity=0.080 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895 97 YAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR 176 (275)
Q Consensus 97 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~ 176 (275)
|+...+..|...+...+......++++.+.+...+..... .....+...+..|.+...+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788888766544548888888888887776654322 1123344566777778889999999999999
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
+++.++++..++|+++.++++++++|++++.+++|+.+.++|++++..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999998764
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.08 E-value=3.5e-09 Score=92.32 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=99.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHH
Q 046895 85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGL 164 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (275)
.+++++++++++|+...+..|...+..+| ....++|+..++++..++.. . +..+.. .+. .+..+.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P-~~~~~~R~~~a~l~l~~~~~---~--~~~~~~---~~~-~~~~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGP-VGGAAMIYSVSGLLLLLTVG---F--PRLRQF---PKR-YLLAGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHHHcc---c--cccccc---cHH-HHHHHhHHHHH
Confidence 45788999999999999999999989988 99999999999888775421 1 111111 111 22223333344
Q ss_pred HHHHHHHHH----hcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 165 MVTLISWCV----RTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 165 ~~~~~~~a~----~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
.+.+++.++ +..++..++++.++.|+++.++++++++|++++.+++|+++.++|++++...
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 444455555 4567888899999999999999999999999999999999999999887643
No 38
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.08 E-value=3.1e-09 Score=92.78 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895 87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV 166 (275)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (275)
.+++++++++|+...+..|...++.++ ..+.++|+.++++...++.. ..+ .+ +..++..|++.....+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p-~~~~~~R~~~a~~~l~~~~~--~~~---~~------~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPP-LMLAGLRFMLVAFPAIFFVA--RPK---VP------LNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHhc--CCC---Cc------hHHHHHHHHHHHHHHH
Confidence 366899999999999999998888888 99999999988765544321 111 11 1123334544444555
Q ss_pred HHHHHHHhc-CCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 167 TLISWCVRT-RGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 167 ~~~~~a~~~-~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|+++.++|+.++...
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 667788887 67889999999999999999999999999999999999999999987743
No 39
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.03 E-value=5e-09 Score=88.19 Aligned_cols=141 Identities=20% Similarity=0.170 Sum_probs=115.4
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhh-hhhHHHHHHHHHh
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGW-NIRLLTVAYSGIV 160 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~ 160 (275)
+...|+++++.|-+.|+....+.|.+ +..+. ..+..+|.+.+..+.+....+..+....+.... +..+..+...++
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~-~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~- 80 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-EPLPA-TEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL- 80 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-ccCCH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-
Confidence 34579999999999999999998765 56777 899999999999988888777655333333222 234454445554
Q ss_pred hhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 161 ASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
-....+.+|.++..+.....+|+-.+++|++.+++|.++++|+++..||++.++..+|+....+.
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999876543
No 40
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.9e-08 Score=87.02 Aligned_cols=188 Identities=14% Similarity=0.218 Sum_probs=128.3
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
+..+++++|++++||.++++.++|+.++-....+ +.++.+.......+.|....+.++++-++..
T Consensus 135 f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~---------------~~~a~~~~~~~n~~~G~~avl~~c~~SgfAg 199 (345)
T KOG2234|consen 135 FSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS---------------PTGAKSESSAQNPFLGLVAVLVACFLSGFAG 199 (345)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC---------------CCCccCCCcccchhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998521111 1111112334567899999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHH-HHHHHHHHHHHHHhccC-cc--ccchhh-hhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895 102 VIQAKMSEEYPCQFSSTALMC-VMGAIQAVVFALCMEKD-WS--QWKLGW-NIRLLTVAYSGIVASGLMVTLISWCVRTR 176 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~--~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~a~~~~ 176 (275)
++.++..|+.+....+...++ +++.++.....+..+.. .. .+-... ...|.. ++..+.+=.+....+|+.
T Consensus 200 vYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~v-----Vl~~a~gGLlvs~v~KyA 274 (345)
T KOG2234|consen 200 VYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLV-----VLLNAVGGLLVSLVMKYA 274 (345)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHH-----HHHHhccchhHHHHHHHh
Confidence 999999986554344444443 45555555444433321 11 011111 112222 223333334445667777
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
+-..=+....+..+++.+.++.+++-++|....+|+.+++.++.++...+.+.
T Consensus 275 DnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 275 DNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 77777778888999999999999999999999999999999999998554443
No 41
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.97 E-value=5.3e-09 Score=86.85 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=156.8
Q ss_pred CCCCccHHHHHHHHHHHHHh-----------------------------HHHhccccccCcceeehhhhhhhhhhhhhhh
Q 046895 2 SRPKLNLKILFQAFLCGLFG-----------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMILTFY 52 (275)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~g-----------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~ 52 (275)
+++.++|+.+..+.++-+.. .+.++=+.|.+++..++..+..+|.++.++.
T Consensus 100 k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 100 KRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred cceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhc
Confidence 45567788887766653332 5666778999999999999999999999876
Q ss_pred cCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCC-ccchHHHHHHHHHHHHHHH
Q 046895 53 RGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYP-CQFSSTALMCVMGAIQAVV 131 (275)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~ 131 (275)
|+. .+...+..|+.+.-.|-++-|+-.-++.+..+..+ +...+.++...++.+.+..
T Consensus 180 Ds~----------------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~ 237 (367)
T KOG1582|consen 180 DSQ----------------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFA 237 (367)
T ss_pred ccc----------------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHH
Confidence 543 33446778999999999999998888888877554 2256778888899988888
Q ss_pred HHHHhccCccccchhhhhhH---HHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhh
Q 046895 132 FALCMEKDWSQWKLGWNIRL---LTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGS 208 (275)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~ 208 (275)
.+...+.-++.|.......| ...++.+. .+.++...-..-++..++..+..+....-.++++++++++..++|...
T Consensus 238 ~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy 316 (367)
T KOG1582|consen 238 PMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY 316 (367)
T ss_pred HHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH
Confidence 88888776666665443323 22333333 556666666677888999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcc
Q 046895 209 ILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 209 ~iG~~li~~G~~l~~~~~ 226 (275)
.-|..+++.|+++-.+.+
T Consensus 317 ~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 317 VWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hhhhHHHHHHHHhhcccC
Confidence 999999999999976655
No 42
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.92 E-value=4.3e-08 Score=82.90 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=125.3
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
.+.++-=|++++.-.+-+++..+|+++++.++ .+....|..+...|.++-++-.
T Consensus 127 Fs~if~lEk~~w~L~l~v~lI~~Glflft~Ks--------------------------Tqf~i~Gf~lv~~aS~~sGlRW 180 (349)
T KOG1443|consen 127 FSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS--------------------------TQFNIEGFFLVLAASLLSGLRW 180 (349)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhheeEEEecc--------------------------cceeehhHHHHHHHHHhhhhhH
Confidence 45555559999999999999999999987532 2366789999999999988888
Q ss_pred HHHHhhhhhCC----ccchHHHHHHHHHHHHHHHHHHHhccCcc-----ccchhhh-hhHHHHHHHHHhhhHHHHHH---
Q 046895 102 VIQAKMSEEYP----CQFSSTALMCVMGAIQAVVFALCMEKDWS-----QWKLGWN-IRLLTVAYSGIVASGLMVTL--- 168 (275)
Q Consensus 102 v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l~~~g~~~~~~~~~~--- 168 (275)
.+.+.+.++.| .+..+.........+.+++..+..++... .+...+. ..+..+..+++ +..+++.+
T Consensus 181 ~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~s 259 (349)
T KOG1443|consen 181 AFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFS 259 (349)
T ss_pred HHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHH
Confidence 88887777554 22666666666666777777776665321 1222221 11222222222 22333332
Q ss_pred HHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 169 ISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 169 ~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
-+..+.+++....++.....-+-+.+++..+.+++++...|+|..+...|+.+.
T Consensus 260 EflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 260 EFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 235678889999999999999999999999999999999999999999999998
No 43
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.1e-08 Score=83.80 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=142.2
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
.+..++|.+++...+.++.+..+|.......| ......|+.+++...++-+.+.
T Consensus 120 ~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d--------------------------~sf~~~gY~w~~~n~~~~a~~~ 173 (314)
T KOG1444|consen 120 GEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD--------------------------LSFNLRGYSWALANCLTTAAFV 173 (314)
T ss_pred hHHhhcCcCchhhHHHHHHHHHHHHHhhcccc--------------------------ceecchhHHHHHHHHHHHHHHH
Confidence 78899999999999999999999988876422 2244569999999999999999
Q ss_pred HHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHHhccCc---ccc-chhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895 102 VIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALCMEKDW---SQW-KLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR 176 (275)
Q Consensus 102 v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~ 176 (275)
+..|+..+..+ .++.+..+..+.+.....+..++.+... ... .......+..+.+.++++.++.|+.+ ++.+..
T Consensus 174 v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~-~ct~~~ 252 (314)
T KOG1444|consen 174 VYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF-LCTRVN 252 (314)
T ss_pred HHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-HHHhhc
Confidence 99999876332 2367888888999988888887766411 011 11122335556777777777777775 899999
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
+++..+++....-..+.+-+.++++++.++...+|..+-++|.+++.+.+.++
T Consensus 253 SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~ 305 (314)
T KOG1444|consen 253 SATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK 305 (314)
T ss_pred cccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence 99999999988888888888888899999999999999999999998765443
No 44
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.85 E-value=1.5e-07 Score=84.02 Aligned_cols=135 Identities=18% Similarity=0.108 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895 87 ALFALGSCFGYAIWLVIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM 165 (275)
Q Consensus 87 ~~l~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (275)
..+.+.=-.+-..+....|...+..| | +.++.++++++.+++.+.......+.+... .....+..++.+|++... .
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~~~~~P-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~-~ 127 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALNMLPLP-WTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF-V 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChh-HHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH-H
Confidence 33333334444556788899988888 6 999999999998876554332111111111 012245556777775544 4
Q ss_pred HHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 166 VTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 166 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
+...+.++++.+++.++++..++|++++++++++++|++++.++++++++++|+.+...
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 66677999999999999999999999999999999999999999999999999998763
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.84 E-value=6.8e-08 Score=84.46 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=94.3
Q ss_pred HHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895 99 IWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP 178 (275)
Q Consensus 99 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~ 178 (275)
.++++.|...++.+.++..+.+++.++.+...+.......+... ....++..++.+|++ ..+.+.+.+.+++++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLK---ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence 34567788887756569999999988877665542111111111 113356667777876 47778999999999999
Q ss_pred eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
+.++++.++.|++++++++++++|+++..+++|.+++++|+++..
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999998754
No 46
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.83 E-value=4.9e-08 Score=72.31 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=62.5
Q ss_pred HHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 157 SGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 157 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
.+++..++++.++.+++++++.+++-.+.++.++++.+++++++||++++.+++|.+++++|++++..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34456788999999999999999999999999999999999999999999999999999999988753
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.76 E-value=7.2e-07 Score=75.57 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=116.2
Q ss_pred HHHhccccccCcceee----hhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVL----GSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGY 97 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~----~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~ 97 (275)
++.++|+|.-+..+++ ++++.++|+++.+..+.. ....++..+...|....+++.+.|
T Consensus 89 ~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~------------------~~~~~~~~~~~kgi~~Ll~stigy 150 (269)
T PF06800_consen 89 IGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK------------------SDKSSSKSNMKKGILALLISTIGY 150 (269)
T ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc------------------ccccccccchhhHHHHHHHHHHHH
Confidence 8899999999887754 777778888776542221 011122345677999999999999
Q ss_pred HHHHHHHHhhhhhCCccchHHHHHHHHHHHHH-HHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895 98 AIWLVIQAKMSEEYPCQFSSTALMCVMGAIQA-VVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR 176 (275)
Q Consensus 98 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~ 176 (275)
..|.+..|.. +.++ +....-+. ++.++. .++..+..+.. +. ...|. =+..|+ .-.++..++..+.+..
T Consensus 151 ~~Y~~~~~~~--~~~~-~~~~lPqa-iGm~i~a~i~~~~~~~~~--~~---k~~~~-nil~G~-~w~ignl~~~is~~~~ 219 (269)
T PF06800_consen 151 WIYSVIPKAF--HVSG-WSAFLPQA-IGMLIGAFIFNLFSKKPF--FE---KKSWK-NILTGL-IWGIGNLFYLISAQKN 219 (269)
T ss_pred HHHHHHHHhc--CCCh-hHhHHHHH-HHHHHHHHHHhhcccccc--cc---cchHH-hhHHHH-HHHHHHHHHHHhHHhc
Confidence 9999998763 3455 55444333 333332 22223222111 11 11122 244454 4567788899999999
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchh----hhhhHHHHHHHHHH
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLG----SILGATLIVCGLYA 221 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~----~~iG~~li~~G~~l 221 (275)
+.+..=.+..+..+++.+.+.++++|+=+.. .++|++++++|.++
T Consensus 220 G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 220 GVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred cchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999987765 46788888888765
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.71 E-value=6.4e-07 Score=77.13 Aligned_cols=143 Identities=21% Similarity=0.218 Sum_probs=104.8
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhh
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVA 161 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 161 (275)
....+....+++++.|+......+.......+.......+.+.+.+...+..... .....+.. ..+......+.+.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~ 79 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE--PRGLRPAL--RPWLLLLLLALLG 79 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh--cccccccc--cchHHHHHHHHHH
Confidence 3456788899999999999999998876523314444556666666522222211 11011111 1133356666778
Q ss_pred hHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHH-HHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895 162 SGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSS-LILDEKLHLGSILGATLIVCGLYAVLWGKGK 228 (275)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~-li~~e~~s~~~~iG~~li~~G~~l~~~~~~~ 228 (275)
....+.+++.+++++++..++++.++.|+++.++++ ++++|++++.+++|..+.+.|++++.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 889999999999999999999999999999999997 7679999999999999999999998765443
No 49
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.68 E-value=1.2e-07 Score=79.20 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=110.1
Q ss_pred HhccccccCcceeehhhhhhhhhhhhhhhcCcccccc--CCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 24 KLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIW--STNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 24 ~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
+...++|++..++++..+...|++.....+....... ...-...+. +...+.....+..+.|....+.+.++-++..
T Consensus 23 ~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~-~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~ 101 (222)
T TIGR00803 23 LLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM-VQSSAKTLMFGNPVVGLSAVLSALLSSGFAG 101 (222)
T ss_pred ccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec-CCCCccccccccHHHHHHHHHHHHHHHhhhH
Confidence 5566777777777777777777765432221100000 000000000 0000001122356778888888888888888
Q ss_pred HHHHhhhhhCCccchHHHHHH-HHHHHHHHHHHHHhccC-ccccc--hhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 102 VIQAKMSEEYPCQFSSTALMC-VMGAIQAVVFALCMEKD-WSQWK--LGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
++.++..++.+.........+ +++.+.........+.. ...+. ...+...+ .. ++..+.+..+..+.+++.+
T Consensus 102 ~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~a~~~~~v~~vlk~~~ 177 (222)
T TIGR00803 102 VYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW---IV-GLLNVGGGLCIGGVVRYAD 177 (222)
T ss_pred HHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH---HH-HHHHHhcCceeeehhHHhH
Confidence 888887665433122212222 22222111111111111 11111 00111111 11 2244566777889999999
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYA 221 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l 221 (275)
+...+....++++++.++++++++|+++..+++|+.+++.|+++
T Consensus 178 ~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 178 NTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 99999999999999999999999999999999999999998765
No 50
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.8e-08 Score=81.98 Aligned_cols=188 Identities=14% Similarity=0.077 Sum_probs=146.1
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
+.++++|+|-+.....++++.+.|-.+=+ | . .+..+.-.+.|.+++..|.++-|...
T Consensus 145 LtyvllkqkTs~~~~~~C~lIi~GF~lGv--d-q--------------------E~~~~~ls~~GvifGVlaSl~vAlna 201 (347)
T KOG1442|consen 145 LTYVLLKQKTSFFALGCCLLIILGFGLGV--D-Q--------------------EGSTGTLSWIGVIFGVLASLAVALNA 201 (347)
T ss_pred hHHhhcccccccccceeehhheehheecc--c-c--------------------ccccCccchhhhHHHHHHHHHHHHHH
Confidence 88999999999999999888888866543 1 1 11334567899999999999999999
Q ss_pred HHHHhhhhhC-CccchHHHHHHHHHHHHHHHHHHHhccCcccc--chh-hhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 102 VIQAKMSEEY-PCQFSSTALMCVMGAIQAVVFALCMEKDWSQW--KLG-WNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 102 v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
++.|+..... +.-+..+.+..+.+.+..+|...+.+.-...+ +.. ....|..+.+.|+++.+++|... +=+|..+
T Consensus 202 iytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TS 280 (347)
T KOG1442|consen 202 IYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTS 280 (347)
T ss_pred HhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecc
Confidence 9999876543 33355788888999999999888766422222 222 33456666677777777776653 5678899
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccccc
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKI 233 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~~~ 233 (275)
|...++-.....+.-.++++.+++|.-+..-|-+-+++++|..++.+.|..+.+++
T Consensus 281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987765555443
No 51
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.58 E-value=7.2e-07 Score=77.58 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=94.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM 165 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (275)
|.+++++++++|+...+..|+.. ..++ .+.. +..++.++......+...+ ... ....+..-...|+ .-+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~--~~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLP--EFW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCC--ccc--ccHHHHHHHHHHH-HHHhh
Confidence 67899999999999999999875 3333 3322 4555555555444443321 111 1111221222233 46788
Q ss_pred HHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHHHhcCccchhh----hhhHHHHHHHHHHhhhc
Q 046895 166 VTLISWCVRTRGPLFASIFNP-LMLVVVAILSSLILDEKLHLGS----ILGATLIVCGLYAVLWG 225 (275)
Q Consensus 166 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~li~~e~~s~~~----~iG~~li~~G~~l~~~~ 225 (275)
+.+|+.++++.+.+.+-.+.+ ++++++.++++++++|+.+..+ ++|.+++++|++++...
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 899999999999999988888 8999999999999999999999 99999999999987544
No 52
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.52 E-value=2.1e-06 Score=74.80 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=97.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhh
Q 046895 83 RFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVAS 162 (275)
Q Consensus 83 ~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (275)
...|..+.++++++|+......|...++.++ ....++|++++++++.++...... .++ ...+...+..|++ .
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~-~~~~~~R~~~a~l~l~~~~~~~~~---~~~---~~~~~~~~~~g~~-~ 81 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVGA-PGVTALRLALGTLILIAIFKPWRL---RFA---KEQRLPLLFYGVS-L 81 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHhHHhc---cCC---HHHHHHHHHHHHH-H
Confidence 3678999999999999999999999988888 899999999999887765432111 111 2334445566663 5
Q ss_pred HHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 163 GLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
+..+.++++++++++++.++++.++.|+++.+++ +|++.. +.+..+.++|+.++.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheee
Confidence 6667888999999999999999999999998876 355544 455667788887765
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.44 E-value=4.4e-06 Score=62.34 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=59.7
Q ss_pred HhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 159 IVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
++..+++++++..++++++.+.+=.+ ..+..+.+.+.++++++|++|+.+++|+.++++|++++....
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 44667889999999999998887655 568999999999999999999999999999999999986544
No 54
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=69.74 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=123.5
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++++.+|+|+...+.++.++++.|++++...| ....+.+.|...+..++...|.|-
T Consensus 96 La~IVL~D~~~~~kIlaailAI~GiVmiay~D------------------------N~~a~e~iGi~~AV~SA~~aAlYK 151 (290)
T KOG4314|consen 96 LAIIVLGDRFMGFKILAAILAIGGIVMIAYAD------------------------NEHADEIIGIACAVGSAFMAALYK 151 (290)
T ss_pred HHHHHhccchhhhhHHHHHHHhCcEEEEEecc------------------------chhhhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999997533 233467899999999999999999
Q ss_pred HHHHhhhhhCCccchHHHHHHHHH---HHHH-HHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMG---AIQA-VVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~---~i~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
+..|......+- -...-++...+ ..+. .+.....-..-.+|+......|..++..+.+..+. .++.+.++..+.
T Consensus 152 V~FK~~iGnAn~-Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~ 229 (290)
T KOG4314|consen 152 VLFKMFIGNANF-GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLN 229 (290)
T ss_pred HHHHHHhccCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHH-hhheeehhhhhc
Confidence 999988764332 11111111111 1111 11111111112333322233466566665544333 445578899999
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
|...++-+.....--+....++-+-..+.....|.+++..|.+++...
T Consensus 230 PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 230 PILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 999999999888888899988666677888999999999999887653
No 55
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.33 E-value=5.2e-06 Score=69.67 Aligned_cols=185 Identities=15% Similarity=0.097 Sum_probs=127.0
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++.-+++++++.++|+|+....+|++++-..|-. . ..++-.+......|+++.++|-+.-|.-.
T Consensus 129 fst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~---------------~-~~~p~~d~s~iitGdllIiiaqiivaiQ~ 192 (372)
T KOG3912|consen 129 FSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH---------------L-VTDPYTDYSSIITGDLLIIIAQIIVAIQM 192 (372)
T ss_pred HHHHHHhcccchhhHHHHHHHHhhhheeeeeecc---------------c-ccCCccccccchhhhHHHHHHHHHHHHHH
Confidence 6788999999999999999999999988532111 0 00111223466789999999999999999
Q ss_pred HHHHhhhhhC--CccchHHHHHHHHHHHHHHHHHHHhc----c-CccccchhhhhhHHH---------HHHHHHhhhHHH
Q 046895 102 VIQAKMSEEY--PCQFSSTALMCVMGAIQAVVFALCME----K-DWSQWKLGWNIRLLT---------VAYSGIVASGLM 165 (275)
Q Consensus 102 v~~k~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~----~-~~~~~~~~~~~~~~~---------l~~~g~~~~~~~ 165 (275)
++-+|..++. ++ .....|..+++.++...++.... + .++.-+...-.+|.- .+++...+...+
T Consensus 193 v~Eek~l~~~nV~p-l~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vS 271 (372)
T KOG3912|consen 193 VCEEKQLKKSNVAP-LQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVS 271 (372)
T ss_pred HHHHhhhhhccCCH-HHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhh
Confidence 9999888854 45 88899999998655444443221 1 111111000011110 112222222222
Q ss_pred HHHHH----HHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 166 VTLIS----WCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 166 ~~~~~----~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
-.+++ ...+..+++.=.++-.+...+.=+++.....|.+...|+.|.++.+.|++++.
T Consensus 272 iAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 272 IAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred eeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 45577889999999999999999999999999999999999999999999985
No 56
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.32 E-value=1.3e-05 Score=70.56 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 149 IRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 149 ~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
..|+..+.+++ .=+.+.++.+.|+++++.+.+.++.....+++.+++++++++++++.+++|+++.+.|+.++.....
T Consensus 77 ~~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 77 RPWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 44555677777 4568888899999999999999999999999999999999999999999999999999998876543
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.26 E-value=1.9e-05 Score=58.14 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=58.9
Q ss_pred HhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 159 IVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
++..++++.++..++++++.+.+=.. ..+..+.+.++++++++|++++.+++|+.++++|+++.....
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44667889999999999998876544 668889999999999999999999999999999999986543
No 58
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.23 E-value=3.3e-06 Score=68.55 Aligned_cols=187 Identities=18% Similarity=0.161 Sum_probs=133.7
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
.+..++|.|++-..+.+.++.++..+.-.-+|-. +. .-.......|+++....++.-+.+.
T Consensus 111 gEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q------------------~~-~~~~~~lN~GY~Wm~~NclssaafV 171 (309)
T COG5070 111 GEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ------------------AS-AFKAQILNPGYLWMFTNCLSSAAFV 171 (309)
T ss_pred hHHHHhcCccchhhHHHHHHHHHHHHHhccchhh------------------HH-HHHhcccCCceEEEehhhHhHHHHH
Confidence 6778899999988888877666555443211100 00 0011244568999999999999999
Q ss_pred HHHHhhhhhC--CccchHHHHHHHHHHHHHHHHHHHhccCccc-cc-hhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 102 VIQAKMSEEY--PCQFSSTALMCVMGAIQAVVFALCMEKDWSQ-WK-LGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 102 v~~k~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
...|+..+-. .. ...+++..+.+..+++.+.++.+...+. .. ..+.....++...|+.+.+++|. ..|.++..+
T Consensus 172 L~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~-saWcvrVtS 249 (309)
T COG5070 172 LIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYC-SAWCVRVTS 249 (309)
T ss_pred HHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhc-cceeEeehh
Confidence 9999876632 34 6678999999999998888877643221 01 11111233456666655555444 469999999
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
++..+.+..++..-.++.|.++++|+.+...+..+.+.....+++...+.++
T Consensus 250 STtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k 301 (309)
T COG5070 250 STTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK 301 (309)
T ss_pred hhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888877655443
No 59
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.20 E-value=7.5e-06 Score=71.31 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=47.5
Q ss_pred HhhhHHHHHHHHHHHhcCCceehhhhhhH-HHHHHHHHHHHHhcCc--cchh----hhhhHHHHHHHHHHhhhcc
Q 046895 159 IVASGLMVTLISWCVRTRGPLFASIFNPL-MLVVVAILSSLILDEK--LHLG----SILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~-~pv~~~i~~~li~~e~--~s~~----~~iG~~li~~G~~l~~~~~ 226 (275)
+.+........++++++.+++.+..+.+. -..++++-+.++++|. ++.. ...|+.+++.|+++....+
T Consensus 220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 33555666677899999999988876665 4556666677778874 4443 4667788888888876544
No 60
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.14 E-value=6e-05 Score=65.96 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHHHHHHHhhhhhCCc---cchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 046895 98 AIWLVIQAKMSEEYPC---QFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVR 174 (275)
Q Consensus 98 a~~~v~~k~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~ 174 (275)
..+.+++++..++... +..+++.++...++...+.......+.. +.. .+...+..++ ...++..+-+.+++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~-~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS--RKI---PLKKYAILSF-LFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC--CcC---hHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3355666666654332 2567777777777777766554441111 111 1222344454 55677788899999
Q ss_pred cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccccc
Q 046895 175 TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEM 230 (275)
Q Consensus 175 ~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~ 230 (275)
+++.....++-...|+.+.++++++++++.+..++++.+++.+|+++....+.+..
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 99999999999999999999999999999999999999999999999876554433
No 61
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.09 E-value=2.2e-05 Score=68.44 Aligned_cols=120 Identities=22% Similarity=0.172 Sum_probs=90.3
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhh
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVA 161 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 161 (275)
++..|.++++.++++.+....++|+...+.+. -... ......+....+.| +.|++.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~-------------------~~~~~~~~l~~~~W----~~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLR-------------------AGSGGRSYLRRPLW----WIGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc-------------------ccchhhHHHhhHHH----HHHHHH
Confidence 67789999999999999999999998765443 1100 00000111111212 233444
Q ss_pred hHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 162 SGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
..++..+.+.++...+.+.++.+..+.-++..+++..+++|+++...++|+++++.|..+....
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 4566778888999999999999999999999999999999999999999999999999876543
No 62
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.04 E-value=1.3e-06 Score=72.79 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=94.5
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhh
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVA 161 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 161 (275)
....|..+..++ ..+....+..++... .++ +.....+++.-.++..+..+...... +......-| +++=|++
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e-~~p-~e~a~~r~l~~mlit~pcliy~~~~v--~gp~g~R~~--LiLRg~m- 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLE-NDP-MELASFRLLVRMLITYPCLIYYMQPV--IGPEGKRKW--LILRGFM- 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhc-cCh-hHhhhhhhhhehhhhheEEEEEeeee--ecCCCcEEE--EEeehhh-
Confidence 456788888888 666666777776653 444 56666664443333333222221111 111111112 2333443
Q ss_pred hHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 162 SGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
...+..+.+|++++++-+.+.++..+.|+++++++|++++|+.|....+|..+.+.|+++..+...
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 345667778999999999999999999999999999999999999999999999999999876553
No 63
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.03 E-value=0.00013 Score=53.61 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 160 VASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
+...+++.+...++|++|.+.+ ++...+..+.+.+.++++++|++++.+++|+.+++.|++...
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999988765 566678889999999999999999999999999999999864
No 64
>PRK11431 multidrug efflux system protein; Provisional
Probab=98.01 E-value=0.00011 Score=53.67 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=58.0
Q ss_pred HhhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 159 IVASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
++..++++.+...++|+++.+.+ ++...+..+.+.+.++++++|++++.+++|+.++++|++..+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34667889999999999988765 6667788999999999999999999999999999999998754
No 65
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.99 E-value=9.9e-05 Score=53.40 Aligned_cols=65 Identities=29% Similarity=0.425 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 161 ASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
....+|.+...++|+++.+.+ ++....-.+.+.+.++++++|++++.+++|..++++|++.....
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 557889999999999987764 77888899999999999999999999999999999999988654
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.88 E-value=0.00045 Score=53.16 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM 165 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (275)
..+++++++++-+....+..++.++..+++....+.+..+++.+....++.++. .........|+. ..-|+ ..+..
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~-~lGG~-lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWA-YLGGL-LGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHH-hccHH-HHHHH
Confidence 357889999999999999999988877339999999999999998888877653 222222223442 33444 45566
Q ss_pred HHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHH----HhcCccchhhhhhHHHHHHHHHH
Q 046895 166 VTLISWCVRTRGPLFASIFNP-LMLVVVAILSSL----ILDEKLHLGSILGATLIVCGLYA 221 (275)
Q Consensus 166 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~l----i~~e~~s~~~~iG~~li~~G~~l 221 (275)
..+..+.+++++++....+.. -+-+.+.+++.+ .-++++++.+++|.+++++|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 677778889998887766554 456666777775 34578899999999999999874
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.84 E-value=0.00017 Score=51.51 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=36.0
Q ss_pred HhhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHH
Q 046895 159 IVASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLI 215 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li 215 (275)
+...++++.++..++++++.+.+ .+...+..+.+.+.++++++|++|+.+++|+.+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34667889999999999999998 5556799999999999999999999999999875
No 68
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.76 E-value=0.00013 Score=61.71 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895 152 LTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 152 ~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
+.+..-++ ...+...+.+.++++++|+...++..+..++++++++++++++++..||++..+.++|+.++.......
T Consensus 18 ~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 18 LKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 33444455 567788888999999999999999999999999999999999999999999999999999987765444
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.76 E-value=0.0025 Score=56.34 Aligned_cols=187 Identities=15% Similarity=0.101 Sum_probs=105.0
Q ss_pred HHHhcccccc---C----cceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccC-CCCcchhhHhHHHHHH
Q 046895 22 LEKLGIRTRA---G----KAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLH-ADPGKRFLGALFALGS 93 (275)
Q Consensus 22 l~~~~~~e~~---s----~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~a 93 (275)
+..++++|-. + ..-.+|+++.++|+++......- .++....+ ++......|.++++++
T Consensus 117 ~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~--------------k~~~~~~~~~~~~~~~KGi~ialis 182 (345)
T PRK13499 117 MPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL--------------KERKMGIKKAEEFNLKKGLILAVMS 182 (345)
T ss_pred HHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh--------------cccccccccccccchHhHHHHHHHH
Confidence 5677777543 2 33577888888999988651110 00000000 2234678899999999
Q ss_pred HHHHHHHH-------HHHHhhhh-hCCccchHHHHHHH---HHHHHHHHH-HHH---hccCcc---ccchhh---hhhHH
Q 046895 94 CFGYAIWL-------VIQAKMSE-EYPCQFSSTALMCV---MGAIQAVVF-ALC---MEKDWS---QWKLGW---NIRLL 152 (275)
Q Consensus 94 ~~~~a~~~-------v~~k~~~~-~~~~~~~~~~~~~~---~~~i~~~~~-~~~---~~~~~~---~~~~~~---~~~~~ 152 (275)
.+.+++|+ ...+.... ..++ .....-++. .+.++.-.. ... ..++.+ ...... ....+
T Consensus 183 gi~~~~f~~~~~~~~~~~~~a~~~g~~~-~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l 261 (345)
T PRK13499 183 GIFSACFSFAMDAGKPMHEAAAALGVDP-LYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVL 261 (345)
T ss_pred HHHHHHHHHHHhhccchhhhhhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHH
Confidence 99999999 44433211 2233 322222222 333333222 121 111111 111100 11222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCceehh----hhhhHHHHHHHHHHHHHhcCccc------hhhhhhHHHHHHHHHHh
Q 046895 153 TVAYSGIVASGLMVTLISWCVRTRGPLFAS----IFNPLMLVVVAILSSLILDEKLH------LGSILGATLIVCGLYAV 222 (275)
Q Consensus 153 ~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s----~~~~~~pv~~~i~~~li~~e~~s------~~~~iG~~li~~G~~l~ 222 (275)
...+.|+ .-.+++++|..+-+..+..... +.+.+..+++.+++. +++|.=+ ..-++|++++++|.++.
T Consensus 262 ~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~li 339 (345)
T PRK13499 262 LSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIV 339 (345)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHH
Confidence 2233343 4566777788887777554333 444777799999998 5999766 56799999999999987
Q ss_pred hhc
Q 046895 223 LWG 225 (275)
Q Consensus 223 ~~~ 225 (275)
...
T Consensus 340 g~~ 342 (345)
T PRK13499 340 GLG 342 (345)
T ss_pred hhc
Confidence 654
No 70
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00083 Score=51.87 Aligned_cols=139 Identities=14% Similarity=0.142 Sum_probs=94.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhH
Q 046895 84 FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASG 163 (275)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (275)
.+..++++.++++-....-...++.+..+++.....+.+..+++.+....++..+. +.+.......|| ...-|+ ..+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW-~~~GG~-lGa 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWW-AWIGGL-LGA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchH-HHHccc-hhh
Confidence 35678899999999999988888888777558888999999998888888774432 233322233344 233344 333
Q ss_pred HHHHHHHHHHhcCCcee-hhhhhhHHHHHHHHHHHHHhc----CccchhhhhhHHHHHHHHHHhhhc
Q 046895 164 LMVTLISWCVRTRGPLF-ASIFNPLMLVVVAILSSLILD----EKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 164 ~~~~~~~~a~~~~~~~~-~s~~~~~~pv~~~i~~~li~~----e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
+--+.-.....+++++. ..+...-+-+.+.+++.+=+. .++++..++|.+++++|+++..+.
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 33344445556665544 445556677777777766544 678999999999999996665543
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.41 E-value=0.0025 Score=56.40 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=89.8
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHH-----hccCc-cccchhhhhhHHHHH
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC-----MEKDW-SQWKLGWNIRLLTVA 155 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~~~~~~~~~~~~~l~ 155 (275)
+...|+++.+++++||+.+.+-.|+ .+..+ ++.. |- ..+. +...+..+ ..+.+ +.....+...+..-+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 4568999999999999999999998 34433 3322 32 2222 22222221 11111 111112223344444
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCcc---c----hhhhhhHHHHHHHHHHhhhc
Q 046895 156 YSGIVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKL---H----LGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~---s----~~~~iG~~li~~G~~l~~~~ 225 (275)
+.|+ .=.+++..+..++++++.+....+ ..++-+.+.+++.+++||-. + ..-.+|.+++++|+++..+.
T Consensus 78 l~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 78 LFGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 457889999999999998887654 56788889999999999754 2 23578999999999998773
No 72
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.40 E-value=0.0022 Score=54.59 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhh-hHHHHHHHHHHHHHhcCccchhhhh----hHHHHHHHHHHhhh
Q 046895 150 RLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFN-PLMLVVVAILSSLILDEKLHLGSIL----GATLIVCGLYAVLW 224 (275)
Q Consensus 150 ~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~i~~~li~~e~~s~~~~i----G~~li~~G~~l~~~ 224 (275)
.++.-++.|+ .=.+++...+.+.++++.+++..+. .++-+.+.++++++|||.-+..+++ +.+++++|+++..+
T Consensus 44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 3454555666 5578999999999999999999887 5666778889999999988877644 77888899999887
Q ss_pred ccccccc
Q 046895 225 GKGKEMK 231 (275)
Q Consensus 225 ~~~~~~~ 231 (275)
.++++.+
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 6655543
No 73
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.29 E-value=0.0018 Score=47.67 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHH
Q 046895 91 LGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLIS 170 (275)
Q Consensus 91 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 170 (275)
++.+++|++.+.+.|+..+..++ ..-.. +..-.... ++ ..|. + ...+.....+...|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~~~-----Ll-----~n~~------y----~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEIKF-----LL-----LNPK------Y----IIPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHHHH-----HH-----HhHH------H----HHHHHHHHHHHHHHH
Confidence 34578999999999999887665 33221 21111111 10 0111 1 113344556678889
Q ss_pred HHHhcCCceehhhhh-hHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 171 WCVRTRGPLFASIFN-PLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 171 ~a~~~~~~~~~s~~~-~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
+.+++.+-+.+..+. .+.=+++++.++++.+|..++..++|+++++.|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999999999999984 8999999999988777787888999999999998764
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0018 Score=55.80 Aligned_cols=185 Identities=12% Similarity=0.126 Sum_probs=96.0
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~ 101 (275)
++..++||++++...+|+.++++|..+++.....+... ....++.+ -..+.. .+.+...+.. ...+-.
T Consensus 107 la~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i-~t~~el~~--------~~~~~~-Fliy~~~iil--~~~il~ 174 (335)
T KOG2922|consen 107 LASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI-ESVEEVWE--------LATEPG-FLVYVIIIIL--IVLILI 174 (335)
T ss_pred HHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc-ccHHHHHH--------HhcCcc-HHHHHHHHHH--HHHHHh
Confidence 89999999999999999999999999997543211100 00000000 000011 1111111111 112222
Q ss_pred HHHHhhhhhCCccchHHHHHHHHHHHHHHHHH----------HHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHH
Q 046895 102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFA----------LCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISW 171 (275)
Q Consensus 102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 171 (275)
...+.. ... ..+..+..+++.+.+.-+. ....+. .....+..|..++.+.. +........++
T Consensus 175 ~~~~p~---~g~-tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~---~ql~~~~ty~~~l~~~~-~~~~Q~~yLNk 246 (335)
T KOG2922|consen 175 FFYAPR---YGQ-TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN---NQLFYPLTWIFLLVVAT-CVSTQMNYLNK 246 (335)
T ss_pred eeeccc---ccc-cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC---cccccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 222221 111 1223333333333211111 111111 11112233554444443 44555566689
Q ss_pred HHhcCCceehhhhhhH-HHHHHHHHHHHHhcCcc--chh----hhhhHHHHHHHHHHhhhcc
Q 046895 172 CVRTRGPLFASIFNPL-MLVVVAILSSLILDEKL--HLG----SILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 172 a~~~~~~~~~s~~~~~-~pv~~~i~~~li~~e~~--s~~----~~iG~~li~~G~~l~~~~~ 226 (275)
|++.-+++.++.+.|+ -..++++-+.++++|-- +.. ...|+..++.|++++...|
T Consensus 247 AL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 247 ALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence 9999999988887765 45667778888888743 333 4678888889988885443
No 75
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.035 Score=48.72 Aligned_cols=138 Identities=17% Similarity=0.080 Sum_probs=95.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhCCcc---chHHHHHHHHHHHHHHHHHHHhccC----c----cccchhhhhhHHH
Q 046895 85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQ---FSSTALMCVMGAIQAVVFALCMEKD----W----SQWKLGWNIRLLT 153 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~ 153 (275)
.=++..+...+.++......|+..++.++. .+..+..-+.-.+++..+.+...+. . ..+......+.+.
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 445666777778888888888776644221 3344444455666666666554311 0 1111111112222
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 154 VAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 154 l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
+..-++ ..++...+++.++.+.+|+...+...+..+-++++.++++++++++.||...++...|+.+++
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 333333 456666788999999999999999999999999999999999999999999999999999998
No 76
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.91 E-value=0.0035 Score=53.06 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccC-ccccchhhhhhHHHHHHHHHhhhHH
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKD-WSQWKLGWNIRLLTVAYSGIVASGL 164 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (275)
|++.++.|+++++.+.+=.|+.- ..|. +...++++....+...++.++.+.+ +.++. .+|-..-+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~gDg-~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~a-----------mlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TGDG-FFFQWVMCSGIFLVGLVVNLILGFPPFYPWA-----------MLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CCCc-HHHHHHHHHHHHHHHHHHHHhcCCCcceeHH-----------Hhhhhhhhc
Confidence 57889999999999999999874 4566 6666666666666666555554321 11111 111112223
Q ss_pred HHHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHH-HhcC---cc--chhhhhhHHHHHHHHHHhhhccccc
Q 046895 165 MVTLISWCVRTRGPLFASIFNP-LMLVVVAILSSL-ILDE---KL--HLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 165 ~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~l-i~~e---~~--s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
+..+-.-+++.++....-++=. .+-+.+-..+-+ ++|+ .+ .+..++|++++++|..++...|.+.
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3333344555555444333222 233444444332 3443 22 5668999999999999887655444
No 77
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.62 E-value=0.0021 Score=56.19 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=75.8
Q ss_pred HHHHHHhhhh--hCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 100 WLVIQAKMSE--EYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 100 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
..++.|+... ..+-++..+..++.++.+.....-.+...+... ......+..++-+|+ ...++.++-+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence 4555677777 556557777776666666655554443322211 112234555677776 45677888899999999
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhh
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSI 209 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~ 209 (275)
.+.+-.+-.++|+++.++++++.+|+.++..+
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~ 140 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTY 140 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEE
Confidence 99999999999999999999999999887533
No 78
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.35 E-value=0.0012 Score=49.23 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHHHh--------------------------------HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895 6 LNLKILFQAFLCGLFG--------------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 6 ~~~~~~~~~~~~g~~g--------------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
++.|.|+.+.+.|+.+ ++++++|||+|..+++|+.+..+|+++++
T Consensus 62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 5778888888888776 99999999999999999999999999875
No 79
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.0014 Score=54.36 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=108.0
Q ss_pred HHHhccccccCccee----ehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKV----LGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGY 97 (275)
Q Consensus 22 l~~~~~~e~~s~~~~----~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~ 97 (275)
.+.+.++|..+..+. +++++.++|+.+-+..+.. ...+++....-.|....+.+.+.|
T Consensus 103 ~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~------------------nk~~~~~~n~kkgi~~L~iSt~GY 164 (288)
T COG4975 103 FGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN------------------NKEEENPSNLKKGIVILLISTLGY 164 (288)
T ss_pred eeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc------------------cccccChHhhhhheeeeeeeccce
Confidence 778899998877663 4555666666655422111 011122334567888999999999
Q ss_pred HHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 98 AIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 98 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
-.|.++.+... .+. .. ...-..++.+++....-....+. .. +...+.-..-|+ .-+.+...+..+.+..+
T Consensus 165 v~yvvl~~~f~--v~g-~s-aiLPqAiGMv~~ali~~~~~~~~---~~--~K~t~~nii~G~-~Wa~GNl~ml~a~~~~G 234 (288)
T COG4975 165 VGYVVLFQLFD--VDG-LS-AILPQAIGMVIGALILGFFKMEK---RF--NKYTWLNIIPGL-IWAIGNLFMLLAAQKVG 234 (288)
T ss_pred eeeEeeecccc--ccc-hh-hhhHHHHHHHHHHHHHhhccccc---ch--HHHHHHHHhhHH-HHHhhHHHHHHhhhhhc
Confidence 99999987654 332 22 12222233333332222222111 11 111121344455 34567777888888888
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhh----hhhHHHHHHHHHHhhh
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGS----ILGATLIVCGLYAVLW 224 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~----~iG~~li~~G~~l~~~ 224 (275)
....=.+..+.-+++.+-+.++++|+=|..+ ++|.+++++|.++...
T Consensus 235 vAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 235 VATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred eeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 8887778888888999999999999988775 6788888888777643
No 80
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.013 Score=48.37 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hCC--c--------cchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHH
Q 046895 90 ALGSCFGYAIWLVIQAKMSE-EYP--C--------QFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSG 158 (275)
Q Consensus 90 ~l~a~~~~a~~~v~~k~~~~-~~~--~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 158 (275)
+..--+||=.|.+.+.++.+ ++. . ...+.++++.+-.++.=++..+... ........+. ...+.
T Consensus 18 a~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~----~~~D~t~~~~-YaAcs 92 (337)
T KOG1580|consen 18 AGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK----TEIDNTPTKM-YAACS 92 (337)
T ss_pred ecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc----ccccCCcchH-HHHHH
Confidence 33344678888888888765 222 1 1123344444444433322222211 1122222333 34444
Q ss_pred HhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccc
Q 046895 159 IVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK 231 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~ 231 (275)
+ +..++++..+.++++++=-..-+--+..|+-..++|+++.+.+.+|....-..+|++|+.++.+.+.|...
T Consensus 93 ~-sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 93 A-SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred H-HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 4 78889999999999999888888889999999999999999999999999999999999999887555443
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.0034 Score=52.15 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=86.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHH
Q 046895 85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGL 164 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (275)
.+++++++=++.|+.......+.. ..| .+-+. -+.++++......++...+... ...+..-+..|+ .=.+
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~G--G~p-~qQ~l-GtT~GALifaiiv~~~~~p~~T-----~~~~iv~~isG~-~Ws~ 71 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFG--GKP-YQQTL-GTTLGALIFAIIVFLFVSPELT-----LTIFIVGFISGA-FWSF 71 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecC--CCh-hHhhh-hccHHHHHHHHHHheeecCccc-----hhhHHHHHHhhh-Hhhh
Confidence 357899999999999888877653 334 33233 3334444433333333222111 122332334444 3357
Q ss_pred HHHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHHHhcCccchhhh----hhHHHHHHHHHHhhhccc
Q 046895 165 MVTLISWCVRTRGPLFASIFNP-LMLVVVAILSSLILDEKLHLGSI----LGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 165 ~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~li~~e~~s~~~~----iG~~li~~G~~l~~~~~~ 227 (275)
++...+.++++++.+++..+.. .+-+-+.+++++.++|..+..+. ++.++++.|+++..+.++
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 8899999999999999998764 56677789999999999988873 455667777777665443
No 82
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.73 E-value=0.0041 Score=45.99 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF 51 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~ 51 (275)
++++++|||++++++++++++++|++++..
T Consensus 77 l~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 77 LSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999974
No 83
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.68 E-value=0.0087 Score=52.70 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895 163 GLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229 (275)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~ 229 (275)
.++...++.++.+.+.+..+++....-+|+..++.++-+|++|+.+.++.++-++|++++...+.++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 5678888999999999999999999999999999999999999999999999999999998765544
No 84
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.0045 Score=53.38 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=93.3
Q ss_pred CcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHH
Q 046895 80 PGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGI 159 (275)
Q Consensus 80 ~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 159 (275)
..++..|.++++.+.+..+...++.|+..++... ...| .+. ...+..... +.+.|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~~r--------------a~~--gg~~yl~~~----~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SGLR--------------AGE--GGYGYLKEP----LWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hccc--------------ccC--CCcchhhhH----HHHHHH
Confidence 4577889999999999999999999987665332 0100 011 111111111 234466
Q ss_pred hhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 160 VASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
+..+++-..-+.+....+++.++.+..+..++.++++..+++|++++.-.+|+++.++|..+.....
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 6667777888888888999999999999999999999999999999999999999999998876543
No 85
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=0.54 Score=40.86 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=79.5
Q ss_pred HHHHHHHhhhhhCCccchHHH--HHHHHHHHHHHHHHHHhccCccccchhhhhhHHH--HHHHHHhhhHHHHHHHHHHHh
Q 046895 99 IWLVIQAKMSEEYPCQFSSTA--LMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLT--VAYSGIVASGLMVTLISWCVR 174 (275)
Q Consensus 99 ~~~v~~k~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~~~~~~~~~~~~a~~ 174 (275)
...+..|.....++-++.... .|.+.+.+.....-..---+.++..+.....|+. +++.+ ....-.++++
T Consensus 26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~------~i~t~~~slk 99 (314)
T KOG1444|consen 26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG------MLFTGSKSLK 99 (314)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH------HHHHcccccc
Confidence 345555666555543344333 7777666665554443222233333333333433 22222 1233358899
Q ss_pred cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 175 TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 175 ~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
+++.....++-...|+++++...++++.+++...|.....+++|......
T Consensus 100 ~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 100 YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999887654
No 86
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.30 E-value=0.71 Score=38.91 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=77.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccch-hhhhhHHHHHHHHHhhhHH
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKL-GWNIRLLTVAYSGIVASGL 164 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~ 164 (275)
-....+.++++--...-+.|.+-...++ ..++.+|..+++++++.+.= +|.. .+..+|..++..|+ +.+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~-~g~t~lRl~~aaLIll~l~R-------Pwr~r~~~~~~~~~~~yGv-sLg~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGA-AGVTALRLAIAALILLALFR-------PWRRRLSKPQRLALLAYGV-SLGG 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccCh-hhHHHHHHHHHHHHHHHHhh-------HHHhccChhhhHHHHHHHH-HHHH
Confidence 5778888888888888888988888887 88899999888877665321 1221 12345777788887 5556
Q ss_pred HHHHHHHHHhcCCceehhhhhhHHHHHHHHHH
Q 046895 165 MVTLISWCVRTRGPLFASIFNPLMLVVVAILS 196 (275)
Q Consensus 165 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~ 196 (275)
-..++|.++++++-..+-.+-.+-|+...+++
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 67788899999999999999999998766543
No 87
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.15 E-value=0.015 Score=46.83 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 165 MVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 165 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
+.+.|..+++.++++.++.+...+..|..+++++.+++++...+++..++.+.|++++.+..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 35778899999999999999999999999999999999999999999999999999887543
No 88
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=94.98 E-value=0.013 Score=43.33 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
++++++||++++++++|++++++|+++++
T Consensus 97 ~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 97 LGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999874
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.97 E-value=0.7 Score=40.69 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=100.5
Q ss_pred ccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhh
Q 046895 30 RAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSE 109 (275)
Q Consensus 30 ~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~ 109 (275)
+-....++|++++++|+.++.....-.. +....+....+...|.++++++.+.-|+.+.-......
T Consensus 132 ~~g~~vL~Gv~v~LiGIai~g~AG~~Ke--------------~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~p 197 (344)
T PF06379_consen 132 PSGQIVLLGVAVCLIGIAICGKAGSMKE--------------KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKP 197 (344)
T ss_pred CCchhhhhHHHHHHHHHHHHhHHHHhhh--------------hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3345678999999999999864321100 00011123345678999999999999988876642211
Q ss_pred -------h-CCccch----HHHHHHHHHHHHHHHHHHHhc---cCccc---cc--hh-hhhhHHHHHHHHHhhhHHHHHH
Q 046895 110 -------E-YPCQFS----STALMCVMGAIQAVVFALCME---KDWSQ---WK--LG-WNIRLLTVAYSGIVASGLMVTL 168 (275)
Q Consensus 110 -------~-~~~~~~----~~~~~~~~~~i~~~~~~~~~~---~~~~~---~~--~~-~~~~~~~l~~~g~~~~~~~~~~ 168 (275)
. .++ .. .....+.-+.+.-...++... ++.+. .. .+ -...++..++.|++ =...+++
T Consensus 198 i~~~a~a~G~~~-l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfff 275 (344)
T PF06379_consen 198 IHEAAVAAGVNP-LYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFF 275 (344)
T ss_pred HHHHHHHcCCCc-HHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHH
Confidence 1 111 11 122223333444444444321 22211 11 01 11334434444543 3455666
Q ss_pred HHHHHhcCCc----eehhhhhhHHHHHHHHHHHHHhcC------ccchhhhhhHHHHHHHHHHhhh
Q 046895 169 ISWCVRTRGP----LFASIFNPLMLVVVAILSSLILDE------KLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 169 ~~~a~~~~~~----~~~s~~~~~~pv~~~i~~~li~~e------~~s~~~~iG~~li~~G~~l~~~ 224 (275)
|-++-.+++. .--.+.+.+..+++-+++++ ++| +.-..-++|+++++.+++++-+
T Consensus 276 Yg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 276 YGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 6666666663 34556888889999999966 676 3334568899999988887754
No 90
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=94.82 E-value=0.026 Score=41.69 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=27.7
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
++++++|||+++++++|+.+.++|++++.
T Consensus 80 ~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 80 AAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999875
No 91
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.61 E-value=0.1 Score=44.97 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=62.4
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 156 YSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
-.|+ ++++-..+.++++++++.+..++.-+..++|..+++.++-=|+++|....-..+|.+|++++.+..
T Consensus 89 Ptal-ata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 89 PTAL-ATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred hhhh-hhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 3444 778888999999999999999999999999999999998889999999999999999998877643
No 92
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=93.45 E-value=0.046 Score=46.99 Aligned_cols=130 Identities=16% Similarity=0.062 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCcc-----------ccchhhhhhHHHHHHHHH
Q 046895 91 LGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWS-----------QWKLGWNIRLLTVAYSGI 159 (275)
Q Consensus 91 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~g~ 159 (275)
+++.+||+......|...++... -+.+.|=+.++.++..++..++-+... .....+...+. ..+.|-
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~-~A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVL-FAMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHH-HHHHhh
Confidence 56788999998888877664443 233556666665554444433322111 11111222233 333343
Q ss_pred hhhHHHHHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHHHhcCccc--hhhhhhHHHHHHHHHHhh
Q 046895 160 VASGLMVTLISWCVRTRGPLFASIFNP-LMLVVVAILSSLILDEKLH--LGSILGATLIVCGLYAVL 223 (275)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~li~~e~~s--~~~~iG~~li~~G~~l~~ 223 (275)
+..-++..+..+++...+.+++-.+.. +.-++++++.|+ +..+.+ ...+.|..++++++++-.
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 456678888889998888887766543 223335556665 345544 245678888888877643
No 93
>PRK02237 hypothetical protein; Provisional
Probab=93.09 E-value=0.63 Score=33.71 Aligned_cols=47 Identities=6% Similarity=0.160 Sum_probs=40.7
Q ss_pred ehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 180 FASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 180 ~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
..+.+..+-.+.+.++++++-+.+|+...++|..+.++|+.++.+.+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 45667778888899999999999999999999999999998876543
No 94
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.07 E-value=0.78 Score=40.40 Aligned_cols=142 Identities=16% Similarity=0.125 Sum_probs=83.5
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhc--cCc-cccchhhhhhHHHHHHHH
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCME--KDW-SQWKLGWNIRLLTVAYSG 158 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~g 158 (275)
.-..|.++..+++++-+.+.+-.||.. +-+ ++.......+-+.+.+|.....- ++. +.....+...++...+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk-~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVK-GWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcC-Ccc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 456899999999999999999999874 222 34333333333333333332211 111 111112222344445556
Q ss_pred HhhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcC-------ccchhhhhhHHHHHHHHHHhhhccc
Q 046895 159 IVASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDE-------KLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e-------~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
++ =+++-..|-.+++|++.+.. ++..-+..+++.++--++.++ +-....++|.++.++|+.+..+.-.
T Consensus 81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 53 35666777888899886643 444555556666665555442 2233568999999999999876533
No 95
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=92.08 E-value=0.11 Score=38.29 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=27.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
++++++||++++.+++|+.+.++|++.+-
T Consensus 74 ~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 74 LSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999985
No 96
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=91.82 E-value=0.25 Score=42.17 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 163 GLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
..+-.+.+.++.+.+++....+-....+|+.+++.-+++.+++..||+|+..+..|.+.+..
T Consensus 97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 34456667888888888888899999999999999999999999999999999999988754
No 97
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=91.50 E-value=0.15 Score=37.35 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMIL 49 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li 49 (275)
++++++||++++.|++++.+.++|++.+
T Consensus 79 ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 79 AGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999886
No 98
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=91.19 E-value=0.16 Score=37.89 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF 51 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~ 51 (275)
++.+++||++++.+++++.+.++|++.+-.
T Consensus 74 ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 74 FSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999988853
No 99
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=90.71 E-value=0.21 Score=36.29 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=27.6
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
++++++||+++..+++++.+.++|++.+-
T Consensus 74 ~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 74 VGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999874
No 100
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.18 E-value=2.9 Score=30.30 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=40.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
.+.+...-.+.+.++++++-+++|+...++|..+.++|+.++.+.+
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4566777788899999999999999999999999999999876654
No 101
>PRK11431 multidrug efflux system protein; Provisional
Probab=90.04 E-value=0.24 Score=36.08 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=27.5
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
++++++||++++.+++++.+.++|++.+-
T Consensus 73 ig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 73 TGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999873
No 102
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=88.45 E-value=0.081 Score=44.45 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 151 LLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 151 ~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
|...+++++ .-+-+.++...|.|+.+.+.+.++..-..+...+++|++++.+-.+.++.|.++.++|++++....-
T Consensus 78 ~~hYilla~-~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 78 WRHYILLAF-VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred HHHhhheeE-EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 333455555 3445555667899999999999999999999999999999999999999999999999998876543
No 103
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=88.15 E-value=0.32 Score=36.86 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=24.4
Q ss_pred hccccccCcceeehhhhhhhhhhhhh
Q 046895 25 LGIRTRAGKAKVLGSLIGIGGAMILT 50 (275)
Q Consensus 25 ~~~~e~~s~~~~~~~~l~~~Gv~li~ 50 (275)
+++||++++.+++|+.+.++|++++.
T Consensus 96 ~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 96 PWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999985
No 104
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=87.24 E-value=0.66 Score=33.43 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 193 AILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 193 ~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
+.+++++++|++++.+..|.++++.++..+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 457888999999999999999998887654
No 105
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.06 E-value=11 Score=32.73 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895 151 LLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK 228 (275)
Q Consensus 151 ~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~ 228 (275)
|+...++++ ...++-.+-+.++++++--...+.-...-+-+.+++.++.+.+.++...+-..+|-.|+.++...+..
T Consensus 83 l~~y~~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s 159 (327)
T KOG1581|consen 83 LYKYSLISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS 159 (327)
T ss_pred hhHHhHHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC
Confidence 554666676 56677777789999999999999999999999999999999999999999999999999888765433
No 106
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.85 E-value=4.8 Score=33.41 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=53.1
Q ss_pred HHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 170 SWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 170 ~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
..++++++....+++-.+..+..+....+++|.+.+.......++++...+...+...
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 5899999999999999999999999999999999999999999999988888777654
No 107
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.81 E-value=2.1 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 192 VAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 192 ~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
-+.+++++++|++.|.++.|..++..|+..+.+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 345899999999999999999999999887654
No 108
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.40 E-value=0.99 Score=38.54 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhcc-----Cccccchhh--hhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhh
Q 046895 111 YPCQFSSTALMCVMGAIQAVVFALCMEK-----DWSQWKLGW--NIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASI 183 (275)
Q Consensus 111 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~ 183 (275)
.+.+.-++.+++++...++..+...... .++..+..- ..+... +.+ ........-+.++++.+.+..-+
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlp---lsv-Vfi~mI~fnnlcL~yVgVaFYyv 133 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLP---LSV-VFILMISFNNLCLKYVGVAFYYV 133 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcc---hhh-eeeeehhccceehhhcceEEEEe
Confidence 4444677888888887777766543322 112222111 111111 111 11223355678999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 184 FNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 184 ~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
--.+..+|++++.|++++++-+.....++.+|+.|..+-..
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd 174 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD 174 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence 99999999999999999999999999999999999877543
No 109
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=84.31 E-value=3.4 Score=29.74 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=40.1
Q ss_pred ehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 180 FASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 180 ~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
..+.+..+-.+.+.++.++.=+.+|+...|+|..+.++|+.++....
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 45667778888899999999999999999999999999987766543
No 110
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.81 E-value=2.9 Score=30.22 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895 164 LMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~ 223 (275)
.+..+|+.-+++.+-+.+..+ +.+.-.|+.+.+..+-.|......++|..++++|+.+..
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 344566777778777766654 556788899999885555557778999999999998753
No 111
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=82.81 E-value=1.1 Score=34.52 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMIL 49 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li 49 (275)
+++++++|+++..+++|+.++++|+++-
T Consensus 124 ~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 124 LSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 8999999999999999999999998763
No 112
>PF15102 TMEM154: TMEM154 protein family
Probab=79.51 E-value=2.5 Score=32.46 Aligned_cols=15 Identities=33% Similarity=0.160 Sum_probs=9.2
Q ss_pred CccchhhHHHhhhhC
Q 046895 261 ITTTKKEEKIEETIK 275 (275)
Q Consensus 261 ~~~~~~~~~~~~~~~ 275 (275)
+.++..|-|-||-||
T Consensus 118 dtpsvmeiEmeeldk 132 (146)
T PF15102_consen 118 DTPSVMEIEMEELDK 132 (146)
T ss_pred CCcchhhhhHHHHHh
Confidence 345666667666554
No 113
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=78.36 E-value=9.5 Score=32.46 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=45.4
Q ss_pred cceeehhhhhhhhhhhhhhhcCccccc------cCCcccccc-CCCc--ccccCC------CCcchhhHhHHHHHHHHHH
Q 046895 33 KAKVLGSLIGIGGAMILTFYRGVEINI------WSTNINLIH-SNGH--VASLHA------DPGKRFLGALFALGSCFGY 97 (275)
Q Consensus 33 ~~~~~~~~l~~~Gv~li~~~~~~~~~~------~~~~~~~~~-~~~~--~~~~~~------~~~~~~~G~~l~l~a~~~~ 97 (275)
+..++|+.++++|..+..+.+.+.... -+...+..+ .+.+ ...+++ .......|..++++++++|
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvly 195 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLY 195 (254)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHH
Confidence 445788888888888876655443110 000111101 0001 001111 1124789999999999999
Q ss_pred HHHHHHHHhhhhhC
Q 046895 98 AIWLVIQAKMSEEY 111 (275)
Q Consensus 98 a~~~v~~k~~~~~~ 111 (275)
+...+=..+..++.
T Consensus 196 Gs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 196 GSNFVPVIYIQDHP 209 (254)
T ss_pred hcccchHHHHHhCc
Confidence 99988887776554
No 114
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=76.05 E-value=0.7 Score=39.40 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCceehhhhhhHHHH----HHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 162 SGLMVTLISWCVRTRGPLFASIFNPLMLV----VVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv----~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
-++..++|.+-+++.+++.-+++...--+ +-.++++++-...+|...=+=-.+.+.++++..+
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLY 184 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888898887776543322 2223343333344444432333345555555444
No 115
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=73.45 E-value=3.1 Score=31.89 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.2
Q ss_pred cCCceehhhhhhHHHHHHHHHHHHHh
Q 046895 175 TRGPLFASIFNPLMLVVVAILSSLIL 200 (275)
Q Consensus 175 ~~~~~~~s~~~~~~pv~~~i~~~li~ 200 (275)
--+....+++.|+.|+++.+++.++.
T Consensus 71 EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888899999888887753
No 116
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=72.52 E-value=73 Score=29.44 Aligned_cols=59 Identities=8% Similarity=-0.089 Sum_probs=34.7
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 156 YSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
=.+++.....|..| -|+..-|....+.. ---.+..-++..++|.++.++.++....+..
T Consensus 248 qssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 248 QSSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred cHHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 34454555556665 55555554444444 0002334566779999999998887765543
No 117
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.60 E-value=2.6 Score=31.55 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred CccchhhHHH
Q 046895 261 ITTTKKEEKI 270 (275)
Q Consensus 261 ~~~~~~~~~~ 270 (275)
...++.|.|+
T Consensus 110 ~p~~~~~~~~ 119 (122)
T PF01102_consen 110 VPLSSVEIEN 119 (122)
T ss_dssp ----------
T ss_pred CCcceeeecC
Confidence 3344444443
No 118
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=70.44 E-value=80 Score=28.24 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=7.0
Q ss_pred HHHHHHhhhHHHHHHHH
Q 046895 154 VAYSGIVASGLMVTLIS 170 (275)
Q Consensus 154 l~~~g~~~~~~~~~~~~ 170 (275)
+...+++...+++.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 65 IPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 119
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=69.35 E-value=6.3 Score=33.84 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHHHHHhc-CCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccccccc
Q 046895 166 VTLISWCVRT-RGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKK 232 (275)
Q Consensus 166 ~~~~~~a~~~-~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~~ 232 (275)
.++-+++++. ++...--++-.-.++...++++++.+.+-+..|+....++-+|+++....+.+..+.
T Consensus 78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 4555677765 677777788888999999999999999999999999999999999987766554444
No 120
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=67.72 E-value=35 Score=26.82 Aligned_cols=58 Identities=17% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHhccccccCcceeehhhh-------hhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHH
Q 046895 22 LEKLGIRTRAGKAKVLGSLI-------GIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSC 94 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l-------~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~ 94 (275)
.+..+.|..++.-+.+|+.+ ++.|+.++... .+.+.......++.++
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~--------------------------~~~~f~qsv~~gf~a~ 141 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNIN--------------------------EGHNFLQSVVYGFGAA 141 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhh--------------------------hhhhHHHHHHHHhhhH
Confidence 55555666666666666654 34555555321 1223445566666666
Q ss_pred HHHHHHHHHHH
Q 046895 95 FGYAIWLVIQA 105 (275)
Q Consensus 95 ~~~a~~~v~~k 105 (275)
+.|+...++..
T Consensus 142 lGfslvmvlfA 152 (193)
T COG4657 142 LGFSLVMVLFA 152 (193)
T ss_pred hhHHHHHHHHH
Confidence 66666555543
No 121
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=65.65 E-value=7.2 Score=29.59 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=16.4
Q ss_pred ceehhhhhhHHHHHHHHHHHHHh
Q 046895 178 PLFASIFNPLMLVVVAILSSLIL 200 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~ 200 (275)
...++++.|+-|++..++++++.
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888776643
No 122
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=64.72 E-value=48 Score=30.87 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhcC-----ccchhhhhhHHHHHHHHHHhhhccc
Q 046895 181 ASIFNPLMLVVVAILSSLILDE-----KLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e-----~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
..++..+.-+.=.++.++=-.+ .++..||+.+.++++|++++.+.++
T Consensus 226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444331111 3788899999999999988765443
No 123
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=62.46 E-value=8.9 Score=29.98 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=12.3
Q ss_pred eehhhhhhHHHHHHHHHHHH
Q 046895 179 LFASIFNPLMLVVVAILSSL 198 (275)
Q Consensus 179 ~~~s~~~~~~pv~~~i~~~l 198 (275)
...+++.|+-|+++.+.+.+
T Consensus 75 lkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666777776666544
No 124
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=60.64 E-value=1.6e+02 Score=28.06 Aligned_cols=41 Identities=7% Similarity=-0.003 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
.+.....|+-+.++|++.-.-..+....++.++++++.++.
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677766443333333333434444444443
No 125
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=59.27 E-value=1.3e+02 Score=28.45 Aligned_cols=8 Identities=13% Similarity=-0.355 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 046895 161 ASGLMVTL 168 (275)
Q Consensus 161 ~~~~~~~~ 168 (275)
...+.|.+
T Consensus 370 ~~~i~Y~l 377 (507)
T TIGR00910 370 IYLCAYFL 377 (507)
T ss_pred HHHHHHHH
Confidence 34444444
No 126
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=58.96 E-value=1.3e+02 Score=26.79 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=12.7
Q ss_pred cchhhhhhHHHHHHHHHHhhh
Q 046895 204 LHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 204 ~s~~~~iG~~li~~G~~l~~~ 224 (275)
.+...+++.++.+.++++..+
T Consensus 368 ~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777666543
No 127
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=56.99 E-value=1.1e+02 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHHhcCccchhhhhhHHHHH--HHHHHhhhc
Q 046895 193 AILSSLILDEKLHLGSILGATLIV--CGLYAVLWG 225 (275)
Q Consensus 193 ~i~~~li~~e~~s~~~~iG~~li~--~G~~l~~~~ 225 (275)
-.+|..++.+-.=+...+|..+.+ +|.+...++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445777777777777777777665 455555543
No 128
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=56.01 E-value=30 Score=26.25 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHhh
Q 046895 208 SILGATLIVCGLYAVL 223 (275)
Q Consensus 208 ~~iG~~li~~G~~l~~ 223 (275)
.++|..+.+.|++.+.
T Consensus 89 ~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666777766543
No 129
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=49.91 E-value=2.3e+02 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=11.3
Q ss_pred HhcCccchhhhhhHHHHHH
Q 046895 199 ILDEKLHLGSILGATLIVC 217 (275)
Q Consensus 199 i~~e~~s~~~~iG~~li~~ 217 (275)
++|..-.|....+.-++.+
T Consensus 176 ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 176 LLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred hcCCCcchHHHHHHHHHHH
Confidence 4566666666666655543
No 130
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=46.37 E-value=11 Score=27.78 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=23.7
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMIL 49 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li 49 (275)
.++++.+|..+++.++|+.+.+.|+.++
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 5677777778889999999999999875
No 131
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=45.67 E-value=2.8e+02 Score=27.12 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=17.8
Q ss_pred cCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 201 DEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 201 ~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
.....+..++|..++++|++++....
T Consensus 502 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 527 (646)
T PRK05771 502 VVGLGPLGLIGKYLIIGGVVLIILGE 527 (646)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhc
Confidence 44445566788888888888776544
No 132
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=44.84 E-value=26 Score=24.93 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHhhh
Q 046895 210 LGATLIVCGLYAVLW 224 (275)
Q Consensus 210 iG~~li~~G~~l~~~ 224 (275)
+|+++++=..+.+.|
T Consensus 51 ~Gi~lMlPAav~ivW 65 (96)
T PF07214_consen 51 VGIGLMLPAAVNIVW 65 (96)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444433333334
No 133
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=42.70 E-value=2.8e+02 Score=25.65 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHh
Q 046895 209 ILGATLIVCGLYAV 222 (275)
Q Consensus 209 ~iG~~li~~G~~l~ 222 (275)
+.|+++++.+++.+
T Consensus 417 ~~~~~~~i~~~~~~ 430 (476)
T PLN00028 417 LMGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 134
>COG1971 Predicted membrane protein [Function unknown]
Probab=40.93 E-value=44 Score=27.08 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHH-HHHHHhh
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIV-CGLYAVL 223 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~-~G~~l~~ 223 (275)
.+++..+.|+++-..+.++-+-.-.+.+|+|.++.. .|+.+..
T Consensus 43 fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 43 FGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777554445677877766554 7776654
No 135
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=40.48 E-value=9.3 Score=32.84 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=0.0
Q ss_pred hhhHhHHHHH
Q 046895 83 RFLGALFALG 92 (275)
Q Consensus 83 ~~~G~~l~l~ 92 (275)
..+|.++.++
T Consensus 105 LF~Gi~~l~l 114 (381)
T PF05297_consen 105 LFVGIVILFL 114 (381)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3445444433
No 136
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=40.46 E-value=35 Score=18.69 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=8.9
Q ss_pred chhhhhhHHHHHHHHHH
Q 046895 205 HLGSILGATLIVCGLYA 221 (275)
Q Consensus 205 s~~~~iG~~li~~G~~l 221 (275)
++..++|++++..+.++
T Consensus 11 ~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567777444443333
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.44 E-value=21 Score=26.77 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHhhh
Q 046895 211 GATLIVCGLYAVLW 224 (275)
Q Consensus 211 G~~li~~G~~l~~~ 224 (275)
|++++++.++++.+
T Consensus 76 GvIg~Illi~y~ir 89 (122)
T PF01102_consen 76 GVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 138
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=39.04 E-value=31 Score=25.78 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=15.0
Q ss_pred HHhcCccchhh----hhhHHHHHHHHHHhhh
Q 046895 198 LILDEKLHLGS----ILGATLIVCGLYAVLW 224 (275)
Q Consensus 198 li~~e~~s~~~----~iG~~li~~G~~l~~~ 224 (275)
++=.|-.+.+. .+.++++++|+++..+
T Consensus 26 ~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgr 56 (125)
T PF15048_consen 26 FFRVEDATPWNYSILALSFVVLVISFFLLGR 56 (125)
T ss_pred heecCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 33356666553 3445555677776643
No 139
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=38.20 E-value=73 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=6.8
Q ss_pred hhhhhhhhhhhhh
Q 046895 38 GSLIGIGGAMILT 50 (275)
Q Consensus 38 ~~~l~~~Gv~li~ 50 (275)
|.++.++|+++..
T Consensus 54 G~~li~~g~l~~~ 66 (115)
T PF05915_consen 54 GTVLIIIGLLLFF 66 (115)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555553
No 140
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=37.62 E-value=3.3e+02 Score=24.98 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=4.7
Q ss_pred hhhhHHHHHHHH
Q 046895 208 SILGATLIVCGL 219 (275)
Q Consensus 208 ~~iG~~li~~G~ 219 (275)
.+++.++.+++.
T Consensus 403 f~~~~~~~li~~ 414 (455)
T TIGR00892 403 FYASGSIVVSAG 414 (455)
T ss_pred HHHhhHHHHHHH
Confidence 344333334343
No 141
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=37.52 E-value=3.2e+02 Score=26.56 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=8.8
Q ss_pred ccchhhhhhHHHHHHHHHHh
Q 046895 203 KLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 203 ~~s~~~~iG~~li~~G~~l~ 222 (275)
.+.+..+..+.+.+++++..
T Consensus 531 ay~~V~~~siaFG~vaiiaa 550 (599)
T PF06609_consen 531 AYRYVYYSSIAFGVVAIIAA 550 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 142
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=36.65 E-value=3.3e+02 Score=24.80 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=78.3
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccch---HHHHHHHHHHHHHHHHHHHhccCccccc--------------
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFS---STALMCVMGAIQAVVFALCMEKDWSQWK-------------- 144 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------- 144 (275)
.+..+..+.+-+.+.|.....+-+.+.++.-++.. +..+..+++....+..-.+..+..+..+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 45678899999999999988888877765543122 2223333333222221112221111000
Q ss_pred ----hhhhhhHHHHHHHHHh-hhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHH------HhcCccchhhhhhHH
Q 046895 145 ----LGWNIRLLTVAYSGIV-ASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL------ILDEKLHLGSILGAT 213 (275)
Q Consensus 145 ----~~~~~~~~~l~~~g~~-~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~l------i~~e~~s~~~~iG~~ 213 (275)
.+....+++.+.+|+. +..++..+.....+.-++..++-+..+.--++.+++.+ ++++....++.....
T Consensus 290 G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 290 GLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred HHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 1111222333444542 45566777778888888888887766665555555443 345666666666666
Q ss_pred HHHHHHHHhh
Q 046895 214 LIVCGLYAVL 223 (275)
Q Consensus 214 li~~G~~l~~ 223 (275)
++++++.+..
T Consensus 370 l~~~~i~m~i 379 (395)
T COG2807 370 LALATLLMLI 379 (395)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 143
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.83 E-value=2e+02 Score=24.61 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=30.1
Q ss_pred ehhhhhhHHHHHHHHHHHHHhc-----CccchhhhhhHHHHHHHHHHhhhc
Q 046895 180 FASIFNPLMLVVVAILSSLILD-----EKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 180 ~~s~~~~~~pv~~~i~~~li~~-----e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
..+++..+..+.=.+...+=-. ..+|..|+++..++++|++++.+.
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555544111 136889999999999998877543
No 144
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=35.62 E-value=76 Score=22.19 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 148 NIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 148 ~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
+..|+.-+.++++..++.+...+|..... .-| ..+-=+|...+|+.++++|.++..+
T Consensus 29 sp~W~~p~m~~lmllGL~WiVvyYi~~~~----------i~p----------i~~lG~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 29 SPRWYAPLMLGLMLLGLLWIVVYYISGGQ----------IPP----------IPDLGNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhcccCC----------CCC----------cccccchHHHHHHHHHHHHHHHHcc
Confidence 34566666777766666666655544333 000 0111167788999999999888653
No 145
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=35.38 E-value=75 Score=19.95 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=32.5
Q ss_pred eeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhh
Q 046895 35 KVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEE 110 (275)
Q Consensus 35 ~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~ 110 (275)
..+|..+.++|++++.+.. .|.+..+++...++......|+..+.
T Consensus 5 ~v~G~~lv~~Gii~~~lPG-------------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG-------------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC-------------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3567778888888875311 37788888888888888887776543
No 146
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=35.28 E-value=2.4e+02 Score=22.79 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=36.5
Q ss_pred HhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchh----hhhhHHHHHHHHHHhh
Q 046895 159 IVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLG----SILGATLIVCGLYAVL 223 (275)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~----~~iG~~li~~G~~l~~ 223 (275)
++.+++.........+..+ -.-.+...=+++++++++++-++.... -++|+-+++.|...+.
T Consensus 111 ~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 111 FIASGILRIVVAFRLRSLP---GWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHHHHHHHHHHHHccccC---CcHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333 334466666778888888887744332 4677778888877654
No 147
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.70 E-value=5.6e+02 Score=27.57 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=6.9
Q ss_pred eehhhhhhhhhhhh
Q 046895 36 VLGSLIGIGGAMIL 49 (275)
Q Consensus 36 ~~~~~l~~~Gv~li 49 (275)
.+++++.+++++++
T Consensus 25 ~~gIlLlllAlfL~ 38 (1355)
T PRK10263 25 ALLILIVLFAVWLM 38 (1355)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 148
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=33.62 E-value=77 Score=18.14 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=17.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q 046895 84 FLGALFALGSCFGYAIWLVIQA 105 (275)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~k 105 (275)
.+=.++-++.+.+|+.|++..-
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~ 26 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGRL 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4556788899999999998653
No 149
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=33.07 E-value=4.3e+02 Score=25.07 Aligned_cols=10 Identities=30% Similarity=0.301 Sum_probs=4.0
Q ss_pred hhhhhhhhhh
Q 046895 38 GSLIGIGGAM 47 (275)
Q Consensus 38 ~~~l~~~Gv~ 47 (275)
|++++..|+.
T Consensus 257 Gll~a~~gvG 266 (524)
T PF05977_consen 257 GLLLAAFGVG 266 (524)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 150
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=32.90 E-value=4.1e+02 Score=24.80 Aligned_cols=22 Identities=0% Similarity=-0.124 Sum_probs=13.7
Q ss_pred HHHHHHhcCCceehhhhhhHHH
Q 046895 168 LISWCVRTRGPLFASIFNPLML 189 (275)
Q Consensus 168 ~~~~a~~~~~~~~~s~~~~~~p 189 (275)
...+..+..++..-+..+.+.-
T Consensus 403 g~s~~~~~aP~~~rg~~~g~~~ 424 (500)
T PRK09584 403 GLAMVAQLVPQRLMGFIMGSWF 424 (500)
T ss_pred HHHHHHHhCcHHHHHHHHHHHH
Confidence 3445667777777777666543
No 151
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=32.83 E-value=47 Score=19.33 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 189 LVVVAILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 189 pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
|+.+.+.|.+++=-+-=....+|.-+++.|++-.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lgL 34 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLGL 34 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777665555555678888888887643
No 152
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=32.80 E-value=1.7e+02 Score=20.42 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 149 IRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 149 ~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
..|+.-+.+|++..++.+...+|.... .-| +..+ | .|...+|..++++|.++..+
T Consensus 31 P~W~~~~m~~lm~~Gl~WlvvyYl~~~-----------~~P-~~~l------G---~WN~~IGfg~~~~G~~mt~r 85 (87)
T PRK02251 31 PRWFVPLFVALMIIGLIWLVVYYLSNG-----------SLP-IPAL------G---AWNLVIGFGLIMAGFGMTTQ 85 (87)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhCC-----------CcC-cccc------c---chhHHHHHHHHHHHHHHHcc
Confidence 456666667776666666665555321 001 1000 0 35778888888888887643
No 153
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=32.79 E-value=60 Score=26.63 Aligned_cols=47 Identities=19% Similarity=0.408 Sum_probs=29.2
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccc-hhhhhhHHH-HHHHHHHhh
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLH-LGSILGATL-IVCGLYAVL 223 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s-~~~~iG~~l-i~~G~~l~~ 223 (275)
.+...+++..+.|..+..++..+-+--+. +.+|+|.++ ++.|..+..
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34555666667788777777775543334 456666555 446877664
No 154
>PRK11469 hypothetical protein; Provisional
Probab=32.61 E-value=42 Score=27.16 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHH-HHHHHhh
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIV-CGLYAVL 223 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~-~G~~l~~ 223 (275)
.+.+..+.|..+...+..+-+-...+.+|+|..+.+ .|..+..
T Consensus 43 ~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 43 FGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888877666555566788877655 5766654
No 155
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=32.40 E-value=16 Score=26.52 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=22.9
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMIL 49 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li 49 (275)
.+.+++||++++..+.|.++.+.++..+
T Consensus 79 Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 79 FSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 7889999999999999988766665543
No 156
>PRK02237 hypothetical protein; Provisional
Probab=32.03 E-value=22 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF 51 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~ 51 (275)
-.+.+-|.|+.+..++|..++++|+.++.+
T Consensus 76 W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 76 WLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 346677999999999999999999998853
No 157
>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=31.83 E-value=46 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCccHHHHHHHHHHHHHhHHHhccccccCcceeeh
Q 046895 4 PKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLG 38 (275)
Q Consensus 4 ~~~~~~~~~~~~~~g~~gl~~~~~~e~~s~~~~~~ 38 (275)
..++.+++....+.|+=-++|++.||-++++.++|
T Consensus 66 ~~l~~~e~~~~~l~~~Ev~~wF~vGEiIGRr~ivG 100 (103)
T PF04718_consen 66 KNLTVKEAAKNGLVGAEVYGWFFVGEIIGRRSIVG 100 (103)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhhheeeccCceeC
Confidence 45666777766666655599999999999999876
No 158
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.02 E-value=1.5e+02 Score=21.69 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 046895 187 LMLVVVAILSSLI 199 (275)
Q Consensus 187 ~~pv~~~i~~~li 199 (275)
.-.++++.++|++
T Consensus 54 sGilVGa~iG~ll 66 (116)
T COG5336 54 SGILVGAGIGWLL 66 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 3445667777763
No 159
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=31.02 E-value=1.9e+02 Score=20.25 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 149 IRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 149 ~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
..|+..+.+|++..++.+...+|..... -| +..+-=.|...+|..++++|.++..+
T Consensus 30 p~W~~~~m~glm~~GllWlvvyYl~~~~-----------~P---------~m~~lG~WN~~IGFg~~i~G~lmt~r 85 (87)
T PRK00159 30 SVWYVVLMLGLMLIGLAWLVVNYLAGPA-----------IP---------WMADLGPWNYAIGFALMITGLLMTMR 85 (87)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhccCC-----------CC---------CCcccCchhHHHHHHHHHHHHHHhcc
Confidence 4466666677766666666665553210 01 01111236778888888888877643
No 160
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.01 E-value=40 Score=28.11 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHhhhcccccccccc
Q 046895 209 ILGATLIVCGLYAVLWGKGKEMKKIT 234 (275)
Q Consensus 209 ~iG~~li~~G~~l~~~~~~~~~~~~~ 234 (275)
..|+++.+..+++..+.|++++...+
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34666666777777666655554433
No 161
>COG4854 Predicted membrane protein [Function unknown]
Probab=30.60 E-value=1.6e+02 Score=21.59 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=33.0
Q ss_pred ceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhh
Q 046895 34 AKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSE 109 (275)
Q Consensus 34 ~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~ 109 (275)
.|.+++..++.|++++.+.+ +.....+..+.+..++...+|..+..+...
T Consensus 73 iqV~~is~Al~gavl~a~kn--------------------------P~~~~a~~al~~A~ca~ivLy~~fY~YYsr 122 (126)
T COG4854 73 IQVFSISAALGGAVLLALKN--------------------------PLHTNAAFALEFAVCAVIVLYLAFYMYYSR 122 (126)
T ss_pred EEEEEehHHHHHHHHHHhcC--------------------------ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999987532 123335667777766666666666655443
No 162
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=29.76 E-value=41 Score=27.58 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=33.7
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
.....+..+++.++.++.+.+++.+..+++..+++..|++.....
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls 51 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLG 51 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhh
Confidence 344556677788888888888888888888888888888765443
No 163
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=29.45 E-value=24 Score=25.66 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF 51 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~ 51 (275)
=.+.+-|+++.+..++|..++++|+.++.+
T Consensus 74 W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 74 WGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 446677999999999999999999999864
No 164
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=29.26 E-value=1.7e+02 Score=26.06 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 046895 206 LGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 206 ~~~~iG~~li~~G~~l~~~ 224 (275)
+...+..++++..+++-.+
T Consensus 288 ~~~ii~g~lll~vl~~~~~ 306 (344)
T PRK15432 288 WNDFIAGLVLLGVLVFDGR 306 (344)
T ss_pred HHHHHHHHHhhhhhhHHHH
Confidence 4456666666655554433
No 165
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=29.09 E-value=72 Score=22.23 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=14.4
Q ss_pred chhhhhhHHHHHHHHHHhhhc
Q 046895 205 HLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 205 s~~~~iG~~li~~G~~l~~~~ 225 (275)
+...++|.++.+.|.++....
T Consensus 3 N~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345577888888887776543
No 166
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=28.92 E-value=4.7e+02 Score=24.23 Aligned_cols=29 Identities=0% Similarity=-0.046 Sum_probs=20.5
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhh
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEE 110 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~ 110 (275)
+..++..+.+.|++|-+.-..+.+...+.
T Consensus 348 hi~F~~AYliAa~a~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 348 HIGFNLAYLIAALACIGLISLYLSSVLKS 376 (430)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777777777777777777776654
No 167
>PF12832 MFS_1_like: MFS_1 like family
Probab=28.88 E-value=1.6e+02 Score=19.69 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHH
Q 046895 154 VAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL 198 (275)
Q Consensus 154 l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~l 198 (275)
.++.+..+....|.-.+.-..-.++..++++..+.|+...+...+
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl 54 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPL 54 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777777766667788889999988888877765554
No 168
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=28.85 E-value=2.9e+02 Score=21.80 Aligned_cols=19 Identities=5% Similarity=0.100 Sum_probs=10.7
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 046895 154 VAYSGIVASGLMVTLISWC 172 (275)
Q Consensus 154 l~~~g~~~~~~~~~~~~~a 172 (275)
++.+.+++++...++...+
T Consensus 31 iiGl~il~~~vnLlii~~G 49 (163)
T PRK07946 31 LLGLLLIGNGVNLLILTAG 49 (163)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555666666655554444
No 169
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=28.23 E-value=6.2e+02 Score=25.34 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHH
Q 046895 90 ALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVF 132 (275)
Q Consensus 90 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 132 (275)
.++.++......++.-.+..+.+. -.+....++++++.++.+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GR-r~~l~~~~~lsai~~ll~ 642 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGR-LRMLAGSMVLSCISCFFL 642 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555 333444444455444443
No 170
>PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=28.12 E-value=7e+02 Score=25.92 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHhh
Q 046895 210 LGATLIVCGLYAVL 223 (275)
Q Consensus 210 iG~~li~~G~~l~~ 223 (275)
+|..++++|+.+..
T Consensus 892 ~GV~l~V~g~~~~i 905 (962)
T PRK12650 892 LGVYLAVLGMVSMA 905 (962)
T ss_pred cceeeehHHHHHHH
Confidence 46667777776654
No 171
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=27.37 E-value=2e+02 Score=27.50 Aligned_cols=124 Identities=17% Similarity=0.086 Sum_probs=67.2
Q ss_pred HHHHHHh--HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHH
Q 046895 15 FLCGLFG--LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALG 92 (275)
Q Consensus 15 ~~~g~~g--l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 92 (275)
...|+.| ++++.--++=++++..++++..+-..+++.- +.++-..+.+.
T Consensus 298 ~mfglpgaalAmy~~A~~enrk~v~~~l~~aa~ts~ltGI-----------------------------TEPiEF~FlFv 348 (530)
T PRK10110 298 FLGGLPGAALAMYHCARPENRHKIKGLLISGVIACVVGGT-----------------------------TEPLEFLFLFV 348 (530)
T ss_pred HHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC-----------------------------CcHHHHHHHHH
Confidence 3444555 6665555666777777777776666666421 33456677888
Q ss_pred HHHHHHHHHHHHHhhhhhCCccchHHHHH--HHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHH
Q 046895 93 SCFGYAIWLVIQAKMSEEYPCQFSSTALM--CVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLIS 170 (275)
Q Consensus 93 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 170 (275)
|...|.++.++..-..--. .+..++ +.-+.++-.++. .. .+. ....|++++..|++..++.|+.+.
T Consensus 349 aP~L~~vha~l~g~~~~~~----~~l~v~~g~~~~g~id~i~~---~~-~~~----~~~~~~~~~~~g~~~~~iyy~vF~ 416 (530)
T PRK10110 349 APVLYVIHALLTGLGFTVM----SVLGVTIGNTDGNIIDFVVF---GI-LHG----LSTKWYMVPVVAAIWFVVYYVIFR 416 (530)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHhCceeccCCCchHHHHHh---cc-ccc----cccCchhHHHHHHHHHHHHHHHHH
Confidence 8888888777765321100 000000 001111111111 10 111 112355577888888888888888
Q ss_pred HHHhcCCce
Q 046895 171 WCVRTRGPL 179 (275)
Q Consensus 171 ~a~~~~~~~ 179 (275)
+.+++.+--
T Consensus 417 f~I~kfnlk 425 (530)
T PRK10110 417 FAITRFNLK 425 (530)
T ss_pred HHHHHcCCC
Confidence 888876433
No 172
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.08 E-value=5.1e+02 Score=24.02 Aligned_cols=121 Identities=12% Similarity=-0.018 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM 165 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (275)
|.++..+.-+++-+.-++.|+ +.++ ++.....+..+...++.+++- ++ ... .+.+++..+.+...
T Consensus 301 giLFI~LTF~~fflfE~~~~~---~iHp-iQY~LVGlAl~lFYlLLLSlS-Eh----i~F----~~AYliAa~a~i~L-- 365 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSKL---RIHP-IQYLLVGLALVLFYLLLLSLS-EH----IGF----NLAYLIAALACIGL-- 365 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---cccH-HHHHHHHHHHHHHHHHHHHHH-hh----hch----HHHHHHHHHHHHHH--
Confidence 555555554444444444443 5677 776666555555555554442 11 111 11111221111222
Q ss_pred HHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 166 VTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 166 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
..+|..++-+..-.-..+...+.-+.+.++..+ --|...+.-....++++.+++++
T Consensus 366 i~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL-q~EdyALL~GSl~LF~iLa~vM~ 421 (430)
T PF06123_consen 366 ISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL-QSEDYALLMGSLLLFIILALVMY 421 (430)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHh
Confidence 233333333333333344444555556565543 44555554444444444444444
No 173
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.78 E-value=1.1e+02 Score=21.96 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895 190 VVVAILSSLILDEKLHLGSILGATLIVCGLYAV 222 (275)
Q Consensus 190 v~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~ 222 (275)
+.++.+|. .+++++....+.-+.++++|+++-
T Consensus 57 l~G~~lG~-WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 57 LLGVAVGI-WLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHH-HHHhhcCCCcHHHHHHHHHHHHHH
Confidence 34444554 477777544344444555555543
No 174
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=26.51 E-value=89 Score=23.80 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=25.0
Q ss_pred cchhhHhHHHHHHHHHHHHHHHHHHhhhhh
Q 046895 81 GKRFLGALFALGSCFGYAIWLVIQAKMSEE 110 (275)
Q Consensus 81 ~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~ 110 (275)
.+..+|.++.-.=++.|++|.++.+.+.++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 467788888888899999999999987543
No 175
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=26.41 E-value=1.1e+02 Score=20.23 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHhhhcc
Q 046895 207 GSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 207 ~~~iG~~li~~G~~l~~~~~ 226 (275)
..+++++++++|.+++..-.
T Consensus 5 ~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34677888888888775433
No 176
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=3.6e+02 Score=21.94 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCC
Q 046895 154 VAYSGIVASGLMVTLISWCVRTRG 177 (275)
Q Consensus 154 l~~~g~~~~~~~~~~~~~a~~~~~ 177 (275)
+++.|++++..-|.+|+++.++.+
T Consensus 130 lll~a~vgGfamy~my~y~yr~~a 153 (226)
T COG4858 130 LLLTAVVGGFAMYIMYYYAYRMRA 153 (226)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhc
Confidence 333444444444444444444433
No 177
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.68 E-value=56 Score=28.04 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=29.9
Q ss_pred ehhhhhhHHHHHHHHHHHHHhcC-----ccchhhhhhHHHHHHHHHHhhhc
Q 046895 180 FASIFNPLMLVVVAILSSLILDE-----KLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 180 ~~s~~~~~~pv~~~i~~~li~~e-----~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
....+.....+.=.+...+=-.+ .+|..|+++..+++.|+++..+.
T Consensus 208 ~f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 208 VFGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred HHHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555442222 25889999999999999887654
No 178
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=25.48 E-value=1.4e+02 Score=17.12 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q 046895 84 FLGALFALGSCFGYAIWLVIQA 105 (275)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~k 105 (275)
.+=.++-++.+.+|+.|++..-
T Consensus 5 ~liVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 5 LLIVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH
Confidence 3456777888999999998753
No 179
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=24.65 E-value=1.8e+02 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=6.1
Q ss_pred ccchhhhhhHHHHH
Q 046895 203 KLHLGSILGATLIV 216 (275)
Q Consensus 203 ~~s~~~~iG~~li~ 216 (275)
++|...++...+.+
T Consensus 77 K~TIi~~lFa~~Ll 90 (180)
T COG2917 77 KPTIIYWLFALVLL 90 (180)
T ss_pred eHHHHHHHHHHHHH
Confidence 44444544443333
No 180
>PRK09579 multidrug efflux protein; Reviewed
Probab=24.63 E-value=2.5e+02 Score=29.24 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Q 046895 190 VVVAILSSLILDEKLHLGSILGATLIVCGLYA 221 (275)
Q Consensus 190 v~~~i~~~li~~e~~s~~~~iG~~li~~G~~l 221 (275)
+.+++++.++.+.+++....+|+ ++++|+++
T Consensus 882 ~~G~~~~L~i~~~~l~~~s~~G~-i~L~GivV 912 (1017)
T PRK09579 882 ICGALIPLFLGVSSMNIYTQVGL-VTLIGLIS 912 (1017)
T ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHHHH
Confidence 35677888888999999999884 55566654
No 181
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=24.46 E-value=81 Score=20.40 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=22.9
Q ss_pred ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHH
Q 046895 178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIV 216 (275)
Q Consensus 178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~ 216 (275)
+...+++..+.|..+..++..+-+..-+..+|+|..+.+
T Consensus 26 ~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iLi 64 (67)
T PF02659_consen 26 ALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIILI 64 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777777766555334555666665543
No 182
>PRK11010 ampG muropeptide transporter; Validated
Probab=24.46 E-value=5.8e+02 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=11.3
Q ss_pred chhhhhhHHHHHHHHHHhhh
Q 046895 205 HLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 205 s~~~~iG~~li~~G~~l~~~ 224 (275)
....++..++.+.|+++..+
T Consensus 382 ~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 382 PTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666543
No 183
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=24.35 E-value=1.2e+02 Score=29.75 Aligned_cols=121 Identities=16% Similarity=0.125 Sum_probs=62.8
Q ss_pred HHHHHHh--HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHH
Q 046895 15 FLCGLFG--LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALG 92 (275)
Q Consensus 15 ~~~g~~g--l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 92 (275)
.+.|+-| ++++.--++=++.+..++++..+-..+++. -+.++=..+.+.
T Consensus 237 ~mFglpgaalAmy~~A~~e~rk~v~~~l~~aaltsfltG-----------------------------ITEPiEF~FlFv 287 (648)
T PRK10255 237 MMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTG-----------------------------VTEPLEFLFMFL 287 (648)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc-----------------------------CCcHHHHHHHHH
Confidence 3344444 666655556566666667666655555541 133456778888
Q ss_pred HHHHHHHHHHHHHhhhhhCCccchHHHHHH---HHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHH
Q 046895 93 SCFGYAIWLVIQAKMSEEYPCQFSSTALMC---VMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLI 169 (275)
Q Consensus 93 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 169 (275)
|...|.++.++..-..-- +.+..++. +-+.++-..+ .. ..+ .. ...|++++.+|++-.++.|+.+
T Consensus 288 AP~Ly~vHa~l~G~s~~~----~~~l~v~ig~~fs~GliD~~~---~~-~~~---~~-~~~~~~~~~vGi~~~~iYy~vF 355 (648)
T PRK10255 288 APLLYLLHALLTGISLFV----ATLLGIHAGFSFSAGAIDYAL---MY-NLP---AA-SQNVWMLLVMGVVFFAIYFVLF 355 (648)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHhcceEecccCCceeHHHH---hc-ccc---cc-ccCceeehhHHHHHHHHHHHHH
Confidence 888888877776532110 00011100 0011111111 11 011 01 1235557888887888888888
Q ss_pred HHHHhcC
Q 046895 170 SWCVRTR 176 (275)
Q Consensus 170 ~~a~~~~ 176 (275)
.+.+++.
T Consensus 356 ~~lI~kf 362 (648)
T PRK10255 356 SAVIRMF 362 (648)
T ss_pred HHHHHHc
Confidence 8888754
No 184
>PRK11715 inner membrane protein; Provisional
Probab=24.02 E-value=5.9e+02 Score=23.68 Aligned_cols=45 Identities=7% Similarity=0.061 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHH
Q 046895 86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFAL 134 (275)
Q Consensus 86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 134 (275)
|.++..+.-+++-+.-++.| .+.++ ++.....+..+...++.+++
T Consensus 307 giLFI~LTF~~fFlfE~~~~---~~iHp-iQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKK---LRIHP-VQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcC---ceecH-HHHHHHHHHHHHHHHHHHHH
Confidence 45554444444444444443 35677 77666666666555555555
No 185
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=23.43 E-value=2.7e+02 Score=23.43 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=26.7
Q ss_pred CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHH
Q 046895 177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVC 217 (275)
Q Consensus 177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~ 217 (275)
..+...++.....++.++..+.++|.+++...+.|..+++.
T Consensus 122 r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iG 162 (246)
T TIGR00966 122 RFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIG 162 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 34444445555555566666677899999888877766553
No 186
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=79 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHhhhcccccccc
Q 046895 209 ILGATLIVCGLYAVLWGKGKEMKK 232 (275)
Q Consensus 209 ~iG~~li~~G~~l~~~~~~~~~~~ 232 (275)
.+-+.+.+.|++...++++++.+.
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~~~ 38 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKGEF 38 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchhhH
Confidence 344556667777776666555443
No 187
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.26 E-value=6e+02 Score=23.48 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHH-hcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 185 NPLMLVVVAILSSLI-LDEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 185 ~~~~pv~~~i~~~li-~~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
...-|+++.++..++ .... ....+.|.+++..|+.++.+.++
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 395 ALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444333 2322 23456788888899877765443
No 188
>PRK02935 hypothetical protein; Provisional
Probab=22.96 E-value=2.4e+02 Score=20.47 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHhhhccccccc
Q 046895 208 SILGATLIVCGLYAVLWGKGKEMK 231 (275)
Q Consensus 208 ~~iG~~li~~G~~l~~~~~~~~~~ 231 (275)
-++|.+.++.+.+++.|..-.+.+
T Consensus 44 m~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 44 MLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 457888888888888765544333
No 189
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=22.15 E-value=4.8e+02 Score=21.93 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=22.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHH
Q 046895 84 FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFAL 134 (275)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 134 (275)
..|....+.-.++-...+.+.+.. ++++....+..++++++...-.+
T Consensus 40 gmGlA~~~Vl~~S~~~~sllr~~i----~~~lRi~v~IlvIA~~V~~v~~~ 86 (231)
T PRK12405 40 GLGLATTLVLVCSNLTVSLLRKWI----PKEIRIPIFVMIIASFVTVVQLL 86 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433 33355556666666655544433
No 190
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.88 E-value=3e+02 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=31.5
Q ss_pred CCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHH
Q 046895 176 RGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLY 220 (275)
Q Consensus 176 ~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~ 220 (275)
...+...++.....++.++..+.++|-+++...+.|...+ .|..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~l-iG~s 193 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTI-IGYS 193 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHh
Confidence 4456666666666777777777888999998888776665 5544
No 191
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=21.75 E-value=4.1e+02 Score=25.09 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHh------------cCccchhhhhhHHHHHHHHHHhhhccc
Q 046895 164 LMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLIL------------DEKLHLGSILGATLIVCGLYAVLWGKG 227 (275)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~------------~e~~s~~~~iG~~li~~G~~l~~~~~~ 227 (275)
+-+.+|.+-..+-++-.-.+......+.-++++-.++ +-+++....+|+.+-+.+.+++..-.+
T Consensus 434 ivlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~ 509 (529)
T COG4147 434 IVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTK 509 (529)
T ss_pred hhHHHHHhhccHHhHHHHHHHHHHHHHHHHHhCccccccccCccccccccCCCCCcchhhhhHHHHHhHheeccCC
Confidence 3344454555555555555555555555555544333 335566678888888888888765443
No 192
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=21.75 E-value=5.1e+02 Score=22.31 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.5
Q ss_pred cchhhhhhHHHHHHHHHHhhhc
Q 046895 204 LHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 204 ~s~~~~iG~~li~~G~~l~~~~ 225 (275)
+|..|++...+++.|++++.+.
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998876543
No 193
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.68 E-value=1.4e+02 Score=25.91 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=27.0
Q ss_pred CCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhh
Q 046895 78 ADPGKRFLGALFALGSCFGYAIWLVIQAKMSEE 110 (275)
Q Consensus 78 ~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~ 110 (275)
....+...|...++++++.|++|.++-+++...
T Consensus 79 ~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~ 111 (300)
T KOG2629|consen 79 VLRRWRDYFVMAVILAGIAYAAYRFVKSYVLPR 111 (300)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999888764
No 194
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=21.61 E-value=2.6e+02 Score=26.59 Aligned_cols=123 Identities=14% Similarity=0.036 Sum_probs=65.9
Q ss_pred HHHHHHh--HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHH
Q 046895 15 FLCGLFG--LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALG 92 (275)
Q Consensus 15 ~~~g~~g--l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 92 (275)
...|+-| ++++.--++=++++..++++..+-..+++.- +.++=..+.+.
T Consensus 289 ~mfglpgaalAmy~~a~~e~rk~v~~~l~~aalts~ltGI-----------------------------TEPiEF~FlFv 339 (517)
T TIGR02004 289 FLGGLPGAALAMYHCARPANRHKIKALLLSGVVACAVGGI-----------------------------TEPLEFLFLFV 339 (517)
T ss_pred HHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC-----------------------------chHHHHHHHHH
Confidence 3444555 6665555566777777877776666666421 33455677777
Q ss_pred HHHHHHHHHHHHHhhhhhCCccchHHHHHH--HHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHH
Q 046895 93 SCFGYAIWLVIQAKMSEEYPCQFSSTALMC--VMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLIS 170 (275)
Q Consensus 93 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 170 (275)
|...|.++.++..-..--.. +..++. .-+.++-..+.... +. ....|++++.+|++..++.|+.+.
T Consensus 340 aP~Ly~vha~l~G~~~~~~~----~~~v~ig~~s~glid~~~~~~~----~~----~~~~~~~~~~vGi~~~~iyy~vF~ 407 (517)
T TIGR02004 340 APLLYLVHAILTGLGFMVMA----LLGVVIGNTDGNLIDFLVFGVL----QG----TYTKWYLVPIVAAIWFVVYYFVFK 407 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HhCceeecCCCchHHHHHhccc----cc----cccCchhhHHHHHHHHHHHHHHHH
Confidence 87878777766653211000 000000 01111111111100 10 113355578888888888898888
Q ss_pred HHHhcCCc
Q 046895 171 WCVRTRGP 178 (275)
Q Consensus 171 ~a~~~~~~ 178 (275)
+.+++.+-
T Consensus 408 ~~I~kfnl 415 (517)
T TIGR02004 408 TAITTFDL 415 (517)
T ss_pred HHHHHcCC
Confidence 88887643
No 195
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=21.27 E-value=2.1e+02 Score=20.79 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046895 88 LFALGSCFGYAIWLVIQAK 106 (275)
Q Consensus 88 ~l~l~a~~~~a~~~v~~k~ 106 (275)
..++.|++.--...-..|.
T Consensus 22 s~AlvA~lLVv~G~~IN~~ 40 (106)
T PF11872_consen 22 SLALVACLLVVYGDDINRF 40 (106)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3444444433333333333
No 196
>PRK11715 inner membrane protein; Provisional
Probab=21.16 E-value=6.7e+02 Score=23.30 Aligned_cols=29 Identities=0% Similarity=-0.148 Sum_probs=19.6
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhhhhh
Q 046895 82 KRFLGALFALGSCFGYAIWLVIQAKMSEE 110 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~ 110 (275)
+..++..+.+.|+.|-+.-..+.....+.
T Consensus 354 HigF~~AYliAa~a~v~li~~Y~~~vl~~ 382 (436)
T PRK11715 354 HIGFTLAYLIAALACVLLIGFYLSAVLRS 382 (436)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44466677777777777777777666543
No 197
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=20.80 E-value=32 Score=23.06 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=16.1
Q ss_pred HHHhcCccchh-hhhhHHHHHHHHHHhhhc
Q 046895 197 SLILDEKLHLG-SILGATLIVCGLYAVLWG 225 (275)
Q Consensus 197 ~li~~e~~s~~-~~iG~~li~~G~~l~~~~ 225 (275)
|-|+|.+...- ..+|.+-.++|++.....
T Consensus 5 Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~ 34 (71)
T PF11022_consen 5 YTIFGRQVQSHYLAIATLGTVFGGVYLATS 34 (71)
T ss_pred eeecccccccchhHHHHHHHHHHHheeccC
Confidence 44666666443 456666666665555433
No 198
>PRK09577 multidrug efflux protein; Reviewed
Probab=20.46 E-value=3.2e+02 Score=28.46 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Q 046895 190 VVVAILSSLILDEKLHLGSILGATLIVCGLYA 221 (275)
Q Consensus 190 v~~~i~~~li~~e~~s~~~~iG~~li~~G~~l 221 (275)
+++++++.+++|.+++...++|++ +++|+++
T Consensus 903 l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivV 933 (1032)
T PRK09577 903 VIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSA 933 (1032)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHH-HHHHHHH
Confidence 346788888999999999999988 6677654
No 199
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.43 E-value=78 Score=18.61 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHhh
Q 046895 211 GATLIVCGLYAVL 223 (275)
Q Consensus 211 G~~li~~G~~l~~ 223 (275)
|.++++.+.+++.
T Consensus 22 ~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 22 GVIIIVLGAFLFF 34 (40)
T ss_pred HHHHHHHHHHhhe
Confidence 3444555555554
No 200
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=20.27 E-value=3.9e+02 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895 150 RLLTVAYSGIVASGLMVTLISWCVRTRGP 178 (275)
Q Consensus 150 ~~~~l~~~g~~~~~~~~~~~~~a~~~~~~ 178 (275)
.|++++.+|++-.++.|+.+.+.+++.+-
T Consensus 349 ~~~~~~~iG~~~~~iyy~~F~~~I~k~~l 377 (476)
T TIGR01998 349 QPLMLLVQGLVFFALYYVVFRFAIRRFNL 377 (476)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35667888888888889988888887643
No 201
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.26 E-value=6.1e+02 Score=22.47 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHhcCC
Q 046895 160 VASGLMVTLISWCVRTRG 177 (275)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~ 177 (275)
+...++|+.+..+.++-.
T Consensus 118 ~t~il~y~G~~~~~k~~d 135 (356)
T COG4956 118 LTIILAYFGFQLADKKRD 135 (356)
T ss_pred HHHHHHHHhhHHhhhhhH
Confidence 355678888888887764
No 202
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.25 E-value=4.1e+02 Score=20.50 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895 166 VTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW 224 (275)
Q Consensus 166 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~ 224 (275)
...+.+-+++-+..+.++-..+ -..-+++.+--..++.++.|..++..=..++..
T Consensus 62 ~G~~~~lm~~kgi~rm~lG~~v----m~~~~~llw~ggv~~~~IAg~~lv~filmvVLi 116 (144)
T PF01350_consen 62 LGVFWFLMRRKGIGRMSLGMLV----MAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLI 116 (144)
T ss_pred HHHHHhhhcCCCcchhhHHHHH----HHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcc
Confidence 3444566777778887765544 334556666677888899999888876555544
No 203
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.18 E-value=7.4e+02 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHHHhc----Cccchhh----hhhHHHHHHHHHHhhh
Q 046895 183 IFNPLMLVVVAILSSLILD----EKLHLGS----ILGATLIVCGLYAVLW 224 (275)
Q Consensus 183 ~~~~~~pv~~~i~~~li~~----e~~s~~~----~iG~~li~~G~~l~~~ 224 (275)
....+..+++.++++-+++ -.+..++ +-|++.++.|++++..
T Consensus 177 a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 177 ASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred HhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 3445666666667766543 3333333 4566666677666543
No 204
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.07 E-value=3.3e+02 Score=19.30 Aligned_cols=56 Identities=9% Similarity=-0.037 Sum_probs=33.5
Q ss_pred HHHHhcCCceehhhhhhHHHHHHHHHHHHH---hcCc-cchhhhhhHHHHHHHHHHhhhc
Q 046895 170 SWCVRTRGPLFASIFNPLMLVVVAILSSLI---LDEK-LHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 170 ~~a~~~~~~~~~s~~~~~~pv~~~i~~~li---~~e~-~s~~~~iG~~li~~G~~l~~~~ 225 (275)
..++++++....-.+-.+.-+++++++.+. .++. +-...|.|.+.-+.+.-+....
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~ 81 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQF 81 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHH
Confidence 566666665555566666666666665552 2322 2223488888778777776543
No 205
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=20.06 E-value=1.8e+02 Score=17.12 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHH
Q 046895 84 FLGALFALGSCFGYAIWLVIQ 104 (275)
Q Consensus 84 ~~G~~l~l~a~~~~a~~~v~~ 104 (275)
.+=.++-++.+.+|++|++..
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 5 LLIVLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 344677788999999998865
Done!