Query 046895
Match_columns 275
No_of_seqs 130 out of 2003
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.3 2E-11 6.7E-16 92.6 8.8 71 156-226 34-105 (137)
2 3b5d_A Multidrug transporter E 99.0 8.8E-09 3E-13 75.2 11.4 70 156-225 34-104 (110)
3 2i68_A Protein EMRE; transmemb 92.8 0.057 1.9E-06 40.3 2.5 30 22-51 74-103 (137)
4 3b5d_A Multidrug transporter E 92.7 0.059 2E-06 38.6 2.4 30 22-51 74-103 (110)
5 4aps_A DI-OR tripeptide H+ sym 48.8 1.3E+02 0.0045 26.0 11.4 14 210-223 457-470 (491)
6 3l1l_A Arginine/agmatine antip 45.8 1.5E+02 0.005 25.6 10.4 41 186-226 388-428 (445)
7 1pw4_A Glycerol-3-phosphate tr 43.7 1.5E+02 0.0051 25.1 12.6 20 204-223 412-431 (451)
8 2l2t_A Receptor tyrosine-prote 42.9 22 0.00074 20.6 2.7 6 220-225 31-36 (44)
9 3b9w_A Ammonium transporter fa 19.3 4.6E+02 0.016 22.9 10.8 62 154-216 262-330 (407)
10 3rko_J NADH-quinone oxidoreduc 16.7 3.6E+02 0.012 20.6 12.5 175 36-247 7-183 (184)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.26 E-value=2e-11 Score=92.57 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=54.3
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 156 YSGIVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
.+++++++++|++|++++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35566889999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.96 E-value=8.8e-09 Score=75.21 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=64.3
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895 156 YSGIVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG 225 (275)
Q Consensus 156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~ 225 (275)
..+++..++++.++.+++++.+.+.+..+ ..+.|++++++++++++|++|+.+++|+.+++.|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34556788999999999999999999888 79999999999999999999999999999999999998654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=92.75 E-value=0.057 Score=40.34 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF 51 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~ 51 (275)
+++++++|++++.+++|+.+.++|++++..
T Consensus 74 ~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999864
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=92.67 E-value=0.059 Score=38.58 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895 22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF 51 (275)
Q Consensus 22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~ 51 (275)
++++++||++++.+++|+.+.++|++++..
T Consensus 74 ~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999863
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=48.84 E-value=1.3e+02 Score=25.96 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHhh
Q 046895 210 LGATLIVCGLYAVL 223 (275)
Q Consensus 210 iG~~li~~G~~l~~ 223 (275)
.+.+.++.++++..
T Consensus 457 ~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 457 FGLGSVVLGIVLVF 470 (491)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=45.79 E-value=1.5e+02 Score=25.57 Aligned_cols=41 Identities=0% Similarity=-0.192 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895 186 PLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK 226 (275)
Q Consensus 186 ~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~ 226 (275)
..-++++.++..+..-..-....+.|..+++.|+.++...+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555444433322222344667888888887776543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=43.75 E-value=1.5e+02 Score=25.09 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=9.6
Q ss_pred cchhhhhhHHHHHHHHHHhh
Q 046895 204 LHLGSILGATLIVCGLYAVL 223 (275)
Q Consensus 204 ~s~~~~iG~~li~~G~~l~~ 223 (275)
.+...++..++.+++.++..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554443
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=42.87 E-value=22 Score=20.58 Aligned_cols=6 Identities=0% Similarity=-0.219 Sum_probs=2.2
Q ss_pred HHhhhc
Q 046895 220 YAVLWG 225 (275)
Q Consensus 220 ~l~~~~ 225 (275)
+++.++
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=19.25 E-value=4.6e+02 Score=22.86 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHhhhHHHHHHHHHH-------HhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHH
Q 046895 154 VAYSGIVASGLMVTLISWC-------VRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIV 216 (275)
Q Consensus 154 l~~~g~~~~~~~~~~~~~a-------~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~ 216 (275)
.+.+|+++..+++....+. ++.=++.-+-.+=..-=+++.+..-+ +....+..|++|.+.++
T Consensus 262 A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl-fa~~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 262 AFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAIL-IVPGIAVAQLTGIGITL 330 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHH-HSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHH-HccCCcHHHHHHHHHHH
Confidence 4666776777766655321 23334444444444445555555544 33333456888887763
No 10
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=16.65 E-value=3.6e+02 Score=20.59 Aligned_cols=175 Identities=5% Similarity=-0.074 Sum_probs=0.0
Q ss_pred eehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccc
Q 046895 36 VLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQF 115 (275)
Q Consensus 36 ~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~ 115 (275)
..+.+....++..+. ..+..-..++.+.+-++-|...++...-- ... .
T Consensus 7 ~~a~~~i~~al~vv~-----------------------------~~n~v~s~l~Li~~f~~~a~l~~ll~a~F--la~-~ 54 (184)
T 3rko_J 7 ICGLIAILATLRVIT-----------------------------HTNPVHALLYLIISLLAISGVFFSLGAYF--AGA-L 54 (184)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------CCSHHHHHHHHHHHHHHHHHHHHHTTCHH--HHH-H
T ss_pred HHHHHHHHHHHHHHH-----------------------------cCcHHHHHHHHHHHHHHHHHHHHHhChHH--HHH-H
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHH
Q 046895 116 SSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAIL 195 (275)
Q Consensus 116 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~ 195 (275)
++.-|...+..++...+++...+...................+++...+...+.......-+.....-....+ .+
T Consensus 55 qilVYvGAi~VLflFvvMl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~l~~~~~~i~~~~~~~~~~~~~n~~-----~i 129 (184)
T 3rko_J 55 EIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAK-----AV 129 (184)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCCSSTTHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCCCHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCCCcccHH-----HH
Q ss_pred HHHHhcCccchhhhhhHHHHH--HHHHHhhhccccccccccccCcccccCCCCc
Q 046895 196 SSLILDEKLHLGSILGATLIV--CGLYAVLWGKGKEMKKITQLVPAKINGESSK 247 (275)
Q Consensus 196 ~~li~~e~~s~~~~iG~~li~--~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (275)
|..++++-.=+.+.++..+.+ +|.+...+++++.+...+...+.+++..+++
T Consensus 130 G~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~~~~~~~~~~~~~~~~~~~~~ 183 (184)
T 3rko_J 130 GITLFGPYVLAVELASMLLLAGLVVAFHVGREERAGEVLSNRKDDSAKRKTEEH 183 (184)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCCCSSCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhccccc
Done!