Query 046895
Match_columns 275
No_of_seqs 130 out of 2003
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 09:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046895.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046895hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 55.7 44 0.0032 26.2 15.1 18 165-182 361-378 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 42.0 72 0.0053 24.8 14.5 21 93-113 68-88 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 38.1 18 0.0013 16.7 2.7 18 85-102 3-20 (27)
4 d1iwga8 f.35.1.1 (A:513-566,A: 32.3 85 0.0062 22.7 9.8 30 190-219 95-124 (222)
5 d1pv7a_ f.38.1.2 (A:) Lactose 15.0 2.1E+02 0.016 21.0 11.3 8 171-178 336-343 (417)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 12.0 1.3E+02 0.0095 21.2 4.6 47 174-220 61-107 (199)
7 d1pv7a_ f.38.1.2 (A:) Lactose 6.3 4.5E+02 0.033 18.8 9.8 28 85-113 45-72 (417)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 6.1 1.9E+02 0.014 14.2 3.5 20 82-101 16-35 (37)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 5.6 1.3E+02 0.0098 18.2 1.8 16 213-228 29-44 (91)
10 d2iuba2 f.17.3.1 (A:286-349) M 5.5 2.1E+02 0.015 15.8 2.5 6 218-223 53-58 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=55.71 E-value=44 Score=26.22 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCCceehh
Q 046895 165 MVTLISWCVRTRGPLFAS 182 (275)
Q Consensus 165 ~~~~~~~a~~~~~~~~~s 182 (275)
....+.......+....+
T Consensus 361 ~~~~~~~~~~~~p~~~~g 378 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKAAG 378 (447)
T ss_dssp HHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHHHHHcCHHHHH
Confidence 334444555555554433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=42.01 E-value=72 Score=24.78 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhhhCCc
Q 046895 93 SCFGYAIWLVIQAKMSEEYPC 113 (275)
Q Consensus 93 a~~~~a~~~v~~k~~~~~~~~ 113 (275)
..+.+++.......+..+.+.
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~g~ 88 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRSNP 88 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 344455555566666666666
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.12 E-value=18 Score=16.70 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 046895 85 LGALFALGSCFGYAIWLV 102 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v 102 (275)
+|.+.+-+++++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 688888888888888753
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=32.28 E-value=85 Score=22.75 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHH
Q 046895 190 VVVAILSSLILDEKLHLGSILGATLIVCGL 219 (275)
Q Consensus 190 v~~~i~~~li~~e~~s~~~~iG~~li~~G~ 219 (275)
+.+++++..+.+.+++....+|.++.+...
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 345556777789999998888877755443
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.04 E-value=2.1e+02 Score=20.98 Aligned_cols=8 Identities=0% Similarity=-0.122 Sum_probs=3.6
Q ss_pred HHHhcCCc
Q 046895 171 WCVRTRGP 178 (275)
Q Consensus 171 ~a~~~~~~ 178 (275)
+..+..++
T Consensus 336 ~~~~~~~~ 343 (417)
T d1pv7a_ 336 YITSQFEV 343 (417)
T ss_dssp HHHHHSCG
T ss_pred HHHHHCCH
Confidence 44444444
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.98 E-value=1.3e+02 Score=21.19 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=27.3
Q ss_pred hcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHH
Q 046895 174 RTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLY 220 (275)
Q Consensus 174 ~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~ 220 (275)
+...+.....+.....++.......+++.+++.....+..+.+...+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 33444444444444444455555667788888877777766665444
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.28 E-value=4.5e+02 Score=18.85 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=12.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhCCc
Q 046895 85 LGALFALGSCFGYAIWLVIQAKMSEEYPC 113 (275)
Q Consensus 85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~ 113 (275)
.|.+..+ ..+.+.+.......+..+.+.
T Consensus 45 ~g~i~s~-~~l~~~i~~~~~G~l~Dr~gr 72 (417)
T d1pv7a_ 45 TGIIFAA-ISLFSLLFQPLFGLLSDKLGL 72 (417)
T ss_dssp HHHHHHH-HHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 4444332 333344444444444455444
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.06 E-value=1.9e+02 Score=14.22 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=15.5
Q ss_pred chhhHhHHHHHHHHHHHHHH
Q 046895 82 KRFLGALFALGSCFGYAIWL 101 (275)
Q Consensus 82 ~~~~G~~l~l~a~~~~a~~~ 101 (275)
+..+|.++.+.-++.++.|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888774
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.59 E-value=1.3e+02 Score=18.23 Aligned_cols=16 Identities=6% Similarity=-0.236 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhcccc
Q 046895 213 TLIVCGLYAVLWGKGK 228 (275)
Q Consensus 213 ~li~~G~~l~~~~~~~ 228 (275)
.+++.|.+++...|.+
T Consensus 29 ~v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 29 VIPAILMAVGFAWKYR 44 (91)
T ss_dssp TTHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHhhheeee
Confidence 3344555554433433
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.45 E-value=2.1e+02 Score=15.84 Aligned_cols=6 Identities=17% Similarity=0.340 Sum_probs=2.2
Q ss_pred HHHHhh
Q 046895 218 GLYAVL 223 (275)
Q Consensus 218 G~~l~~ 223 (275)
++++..
T Consensus 53 ~~~~~~ 58 (64)
T d2iuba2 53 AVIMVV 58 (64)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 333333
Done!