BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046898
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
Length = 130
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 7/95 (7%)
Query: 171 LFQKELTPSDVGKLNRLVIPKKYAVKYFPFISENAGENAINGGVDDMELVFFDKLMRPWK 230
LF+K +TPSDVGKLNRLVIPK +A K+FP S N V + L F D + W+
Sbjct: 13 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVS-------VKGVLLNFEDVNGKVWR 65
Query: 231 FRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITF 265
FRY +W SSQSYV T+GW+RFVKEK L+ D+++F
Sbjct: 66 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSF 100
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 49 FKGVVPQQNGHWGAQIY---ANHQRIWLGTFKSEREAAMAYDSAAIKIRGGDSHRNFP 103
++GV + G + A+I N R+WLGTF++ +AA+AYD AA ++RG + NFP
Sbjct: 3 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 49 FKGVVPQQNGHWGAQIY---ANHQRIWLGTFKSEREAAMAYDSAAIKIRGGDSHRNFP 103
++GV + G + A+I N R+WLGTF++ +AA+AYD AA ++RG + NFP
Sbjct: 6 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 234 CFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYACECANGA 274
+ RS++ +GW FV +K E D+IT + E A+G
Sbjct: 140 LYERSAEQPGGWKGWRTFVIREKRPESDVITSFILEPADGG 180
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 234 CFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYACECANGA 274
+ RS++ +GW FV +K E D+IT + E A+G
Sbjct: 140 LYERSAEQPGGWKGWRTFVIREKRPESDVITSFILEPADGG 180
>pdb|1ZXO|A Chain A, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|F Chain F, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|B Chain B, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|D Chain D, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|C Chain C, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|E Chain E, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25
Length = 291
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 148 DNNSNASLNQIMVHGD-----------EQFAYRQLFQKELTPSDV-GKLNRLVIPKKYAV 195
D S A L +++V GD E+F L Q +LTP ++ ++ R P ++
Sbjct: 141 DEGSGAVLGKLLV-GDILKNQLPATLKEEF----LKQFDLTPPEIIDRVYRQPFPNRFLA 195
Query: 196 KYFPFISENAGENAINGGVDDMELVFFDK 224
PFI+++ E AI V + + FF +
Sbjct: 196 SLSPFIAQHLEEPAIRQLVXNSFIAFFRR 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,602,453
Number of Sequences: 62578
Number of extensions: 401812
Number of successful extensions: 784
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 13
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)