Query 046898
Match_columns 332
No_of_seqs 307 out of 1540
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 4.6E-30 1.6E-34 217.5 12.3 114 166-292 8-121 (130)
2 1gcc_A Ethylene responsive ele 99.9 2.1E-22 7.1E-27 150.3 7.0 58 48-105 2-62 (63)
3 4i1k_A B3 domain-containing tr 99.7 1.6E-17 5.6E-22 143.1 10.7 89 167-272 44-132 (146)
4 1yel_A AT1G16640; CESG, protei 99.6 2.6E-15 8.9E-20 121.7 6.7 84 168-269 7-90 (104)
5 3igm_B PF14_0633 protein; AP2 93.2 0.046 1.6E-06 41.4 2.5 29 44-72 3-32 (77)
6 1na6_A Ecorii, restriction end 92.9 0.053 1.8E-06 53.1 3.2 93 169-268 18-123 (404)
7 1u3e_M HNH homing endonuclease 89.5 0.0011 3.9E-08 57.5 -11.4 63 23-87 84-146 (174)
8 1z1b_A Integrase; protein-DNA 60.6 8.4 0.00029 35.0 4.6 41 51-93 15-55 (356)
9 3jtz_A Integrase; four strande 56.9 41 0.0014 25.5 7.3 41 54-94 30-76 (88)
10 3ju0_A Phage integrase; four s 39.7 88 0.003 24.6 6.9 40 55-94 31-76 (108)
11 2ftc_I Mitochondrial ribosomal 39.0 42 0.0014 27.1 4.9 36 59-94 79-114 (118)
12 3dm3_A Replication factor A; p 35.6 79 0.0027 24.5 6.0 50 217-284 43-92 (105)
13 1oa8_A Ataxin-1; RNA binding, 33.6 35 0.0012 28.3 3.7 29 238-266 87-125 (133)
14 3m7a_A Uncharacterized protein 33.6 60 0.002 26.9 5.2 48 215-265 82-140 (140)
15 3o27_A Putative uncharacterize 33.4 51 0.0017 24.2 4.0 39 241-287 24-62 (68)
16 2k50_A Replication factor A re 29.6 1.6E+02 0.0054 22.5 6.9 41 215-269 43-83 (115)
17 1x60_A Sporulation-specific N- 27.9 36 0.0012 24.5 2.6 23 69-91 46-68 (79)
18 2k75_A Uncharacterized protein 27.9 84 0.0029 24.3 4.9 30 217-266 40-69 (106)
19 3eik_A Tata-box-binding protei 25.3 1E+02 0.0035 27.5 5.5 50 45-95 73-123 (218)
20 1o7i_A SSB, SSO2364, single st 24.7 1.1E+02 0.0037 24.0 5.1 36 215-267 38-73 (119)
21 2qcp_X Cation efflux system pr 24.7 93 0.0032 23.1 4.4 18 255-272 52-69 (80)
22 2vb2_X Copper protein, cation 24.1 90 0.0031 23.6 4.3 26 255-286 60-85 (88)
23 3pjy_A Hypothetical signal pep 24.0 55 0.0019 26.9 3.3 49 215-266 68-127 (136)
24 3r8s_M 50S ribosomal protein L 23.4 78 0.0027 26.2 4.1 35 59-94 91-125 (136)
25 1pqh_A Aspartate 1-decarboxyla 22.4 3.4E+02 0.012 22.6 7.9 74 171-266 27-105 (143)
26 3e0e_A Replication protein A; 22.0 1.2E+02 0.0041 22.9 4.7 35 217-268 40-74 (97)
27 1uta_A FTSN, MSGA, cell divisi 21.3 57 0.0019 23.7 2.6 23 69-91 46-68 (81)
28 1ytb_A Protein (tata binding p 20.3 1.6E+02 0.0054 25.3 5.6 49 45-94 35-84 (180)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=4.6e-30 Score=217.50 Aligned_cols=114 Identities=46% Similarity=0.773 Sum_probs=102.7
Q ss_pred hhhhhhhccccccCCCCCCceEEeeccchhhcCCCCCccccccccCCCccceEEEEEeCCCCcEEEEEEEecCCCeeEEc
Q 046898 166 FAYRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPFISENAGENAINGGVDDMELVFFDKLMRPWKFRYCFWRSSQSYVFT 245 (332)
Q Consensus 166 ~~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~l~~~~~~~~~~~~~~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt 245 (332)
-++.++|.|+||+|||+++++|+||+++|++|||+++.... ..+++|.++|.+|+.|+|+|+||+++++|+|+
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~-------~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt 80 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVS-------VKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLT 80 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCS-------SCCEEEEEEETTTEEEEEEEEEETTTTEEEEE
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccC-------CCcEEEEEEeCCCCEEEEEEEEECCCCceEEc
Confidence 45788999999999999899999999999999999986422 26789999999999999999999988999999
Q ss_pred cChHHHhhhcCCCCCCEEEEEeeccCCCcccCcceEEEEEEecCCCc
Q 046898 246 RGWNRFVKEKKLKEKDIITFYACECANGAKEGQNFFLVDVIHCEGQN 292 (332)
Q Consensus 246 ~GW~~FVk~k~Lk~GD~i~F~r~~~g~~~~~~~~~~~i~~~~~~~~~ 292 (332)
+||..||++|+|++||+|+|+++++++ .+|+|+|||+..++
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~------~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQD------QQLYIGWKSRSGSD 121 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSS------CCEEEEEECCCSCS
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCC------cEEEEEEEECCCCC
Confidence 999999999999999999999988544 37999999998765
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.86 E-value=2.1e-22 Score=150.33 Aligned_cols=58 Identities=41% Similarity=0.807 Sum_probs=55.1
Q ss_pred ceeeEEECCCCeEEEEEee---CCeEEEEccCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 046898 48 KFKGVVPQQNGHWGAQIYA---NHQRIWLGTFKSEREAAMAYDSAAIKIRGGDSHRNFPWT 105 (332)
Q Consensus 48 ~yrGV~~~~~gkw~A~I~~---~~k~~~LG~f~t~eeAA~Ayd~aa~~~~g~~a~~NFp~~ 105 (332)
+|+||+++++|||+|+|+. +++++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999889999999998 478999999999999999999999999999999999964
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.72 E-value=1.6e-17 Score=143.10 Aligned_cols=89 Identities=24% Similarity=0.368 Sum_probs=77.5
Q ss_pred hhhhhhccccccCCCCCCceEEeeccchhhcCCCCCccccccccCCCccceEEEEEeCCCCcEEEEEEEecCCCeeEEcc
Q 046898 167 AYRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPFISENAGENAINGGVDDMELVFFDKLMRPWKFRYCFWRSSQSYVFTR 246 (332)
Q Consensus 167 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~l~~~~~~~~~~~~~~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~ 246 (332)
+..|.|.|+||+|||.+.+.|.||++++++|||.... .+.+.|. |+.|.++|+|+++ ++.|++
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~--------------~i~L~~~-gk~W~v~~~~~~~--~~~ls~ 106 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISG--------------FIKVQLA-EKQWPVRCLYKAG--RAKFSQ 106 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCS--------------EEEEEET-TEEEEEEEEEETT--EEEECT
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCe--------------EEEEEEC-CcEEEEEEEEeCC--cEEECC
Confidence 3568999999999998877899999999999997543 5556787 6999999999874 699999
Q ss_pred ChHHHhhhcCCCCCCEEEEEeeccCC
Q 046898 247 GWNRFVKEKKLKEKDIITFYACECAN 272 (332)
Q Consensus 247 GW~~FVk~k~Lk~GD~i~F~r~~~g~ 272 (332)
||..||++|+|++||+|+|...++.+
T Consensus 107 GW~~Fv~dn~L~~GD~cvFeli~~~~ 132 (146)
T 4i1k_A 107 GWYEFTLENNLGEGDVCVFELLRTRD 132 (146)
T ss_dssp THHHHHHHTTCCTTCEEEEEECSSSS
T ss_pred chHHHHHHcCCCCCCEEEEEEecCCc
Confidence 99999999999999999999877543
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.57 E-value=2.6e-15 Score=121.74 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=70.5
Q ss_pred hhhhhccccccCCCCCCceEEeeccchhhcCCCCCccccccccCCCccceEEEEEeCCCCcEEEEEEEecCCCeeEEccC
Q 046898 168 YRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPFISENAGENAINGGVDDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRG 247 (332)
Q Consensus 168 ~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~l~~~~~~~~~~~~~~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~G 247 (332)
..|.|-|+|+++|. ..+|.||+++++.|.|.+.. .+.++|..|+.|.++++++. ++++|++|
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~~--------------~v~L~~~~G~~W~v~~~~~~--~~~~l~~G 68 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFPI--------------TVDLLDYSGRSWTVRMKKRG--EKVFLTVG 68 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCCS--------------EEEEEETTSCEEEEEEEEET--TEEEECTT
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccCCC--------------EEEEECCCCCEEEEEEEEEC--CcEEEccC
Confidence 34689999999994 45999999999886554332 56778999999999998764 46899999
Q ss_pred hHHHhhhcCCCCCCEEEEEeec
Q 046898 248 WNRFVKEKKLKEKDIITFYACE 269 (332)
Q Consensus 248 W~~FVk~k~Lk~GD~i~F~r~~ 269 (332)
|.+||++|+|++||.|+|...+
T Consensus 69 W~~Fv~~~~L~~GD~lvF~~~~ 90 (104)
T 1yel_A 69 WENFVKDNNLEDGKYLQFIYDR 90 (104)
T ss_dssp HHHHHHHHTCCTTCEEEEEECS
T ss_pred hHHHHHHcCCCCCCEEEEEEcC
Confidence 9999999999999999998755
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.20 E-value=0.046 Score=41.45 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCCCceeeEEEC-CCCeEEEEEeeCCeEEE
Q 046898 44 VSLVKFKGVVPQ-QNGHWGAQIYANHQRIW 72 (332)
Q Consensus 44 ~~~S~yrGV~~~-~~gkw~A~I~~~~k~~~ 72 (332)
..+|+|.||+|. +.+.|.|+-.++|++..
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rrs 32 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRRS 32 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEee
Confidence 357999999995 77899999999987653
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=92.89 E-value=0.053 Score=53.07 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=66.4
Q ss_pred hhhhccccccCCCC----CCceEEeeccchhhcCCCCCccccccccCCCccceEE--EEEeCCCCcEEEEEEEecC----
Q 046898 169 RQLFQKELTPSDVG----KLNRLVIPKKYAVKYFPFISENAGENAINGGVDDMEL--VFFDKLMRPWKFRYCFWRS---- 238 (332)
Q Consensus 169 ~~lF~K~LT~SDV~----~~~rLvIPk~~ae~~lP~l~~~~~~~~~~~~~~~~~l--~~~D~~gk~W~fr~~~~~~---- 238 (332)
..+|.|.|++.|++ ++..+.||+..+..+||.+...... .+...+ .+-|...-.+.++++|.++
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~------~~~~~~~~~l~d~d~p~td~~~twYn~R~~~ 91 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTREL------NPSVFLTAHVSSHDCPDSEARAIYYNSAHFG 91 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSS------SCEEEEEEEESSSCCCCEEEEEEEECGGGTT
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCcccc------CCcceeEEEeccCCCceEEEEEEEecccccC
Confidence 45899999999994 6678999998789999999854321 133333 3344445556999988883
Q ss_pred --CCeeEEccChHH-HhhhcCCCCCCEEEEEee
Q 046898 239 --SQSYVFTRGWNR-FVKEKKLKEKDIITFYAC 268 (332)
Q Consensus 239 --~~~yvLt~GW~~-FVk~k~Lk~GD~i~F~r~ 268 (332)
..-|-|+ .|.. +.=-....+||.++|-+.
T Consensus 92 ~tRnEyRLt-~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 92 KTRNEKRIT-RWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp SCCCEEEEE-CCCTTSGGGCGGGTTCEEEEEEE
T ss_pred CCCCceEEe-ecCCCCcccccCCCCCEEEEEEe
Confidence 3569998 4554 444578889999999876
No 7
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=89.47 E-value=0.0011 Score=57.52 Aligned_cols=63 Identities=11% Similarity=-0.133 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceeeEEECCCCeEEEEEeeCCeEEEEccCCCHHHHHHHHH
Q 046898 23 DSNNSTSGLQPAPKRMRHDKNVSLVKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYD 87 (332)
Q Consensus 23 ~~~n~~~~~~~~~~r~~~~~~~~~S~yrGV~~~~~gkw~A~I~~~~k~~~LG~f~t~eeAA~Ayd 87 (332)
.-+||+-++...|.+++....... .++||.+...++|.|.|... +.++||.|+|.+|||+||.
T Consensus 84 ~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 84 LSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred CHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 334788888877766544333221 24677553335688999888 7778999999999999974
No 8
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=60.60 E-value=8.4 Score=35.01 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred eEEECCCCeEEEEEeeCCeEEEEccCCCHHHHHHHHHHHHHHh
Q 046898 51 GVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKI 93 (332)
Q Consensus 51 GV~~~~~gkw~A~I~~~~k~~~LG~f~t~eeAA~Ayd~aa~~~ 93 (332)
||+.++.|.|..+...+|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5666677899988877899999996 8888877766655544
No 9
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=56.91 E-value=41 Score=25.45 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=29.9
Q ss_pred ECCCC--eEEEEEeeCCe--EEEEccCC--CHHHHHHHHHHHHHHhh
Q 046898 54 PQQNG--HWGAQIYANHQ--RIWLGTFK--SEREAAMAYDSAAIKIR 94 (332)
Q Consensus 54 ~~~~g--kw~A~I~~~~k--~~~LG~f~--t~eeAA~Ayd~aa~~~~ 94 (332)
..++| .|.-+.+.+|+ ++-||.|. |.++|....+.+...+.
T Consensus 30 V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 30 VKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp ECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 34555 59888888776 57899997 58888877777666653
No 10
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=39.67 E-value=88 Score=24.56 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCC--eEEEEEeeCCe--EEEEccCC--CHHHHHHHHHHHHHHhh
Q 046898 55 QQNG--HWGAQIYANHQ--RIWLGTFK--SEREAAMAYDSAAIKIR 94 (332)
Q Consensus 55 ~~~g--kw~A~I~~~~k--~~~LG~f~--t~eeAA~Ayd~aa~~~~ 94 (332)
.++| .|.-+.+.+|+ ++-||.|+ |..+|....+.+...+.
T Consensus 31 ~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~ 76 (108)
T 3ju0_A 31 HPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLA 76 (108)
T ss_dssp CTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred EcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4555 59888888776 57889997 57888777776666553
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=38.99 E-value=42 Score=27.09 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=31.0
Q ss_pred eEEEEEeeCCeEEEEccCCCHHHHHHHHHHHHHHhh
Q 046898 59 HWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKIR 94 (332)
Q Consensus 59 kw~A~I~~~~k~~~LG~f~t~eeAA~Ayd~aa~~~~ 94 (332)
.|.|.|..+..-+-++...+++.|..|..+|+.+|=
T Consensus 79 ~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 499999987777778777889999999999998873
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=35.56 E-value=79 Score=24.54 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCcEEEEEEEecCCCeeEEccChHHHhhhcCCCCCCEEEEEeeccCCCcccCcceEEEE
Q 046898 217 MELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYACECANGAKEGQNFFLVD 284 (332)
Q Consensus 217 ~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~GW~~FVk~k~Lk~GD~i~F~r~~~g~~~~~~~~~~~i~ 284 (332)
..+.+.|..| .+++.+|.+. +.. .|++||+|.| ...-... ..|..+|.++
T Consensus 43 ~~~~l~D~TG---~IrvtlW~~~------------a~~-~l~~Gdvv~i-~g~vk~~-~~g~~eL~~g 92 (105)
T 3dm3_A 43 KSFIVRDETG---SIRVTLWDNL------------TDI-DVGRGDYVRV-RGYIREG-YYGGLECTAN 92 (105)
T ss_dssp EEEEEEETTE---EEEEEEEGGG------------GGS-CCCTTCEEEE-EEEEEEC-TTSSEEEEEE
T ss_pred EEEEEECCCC---cEEEEEECcc------------ccc-ccCCCCEEEE-EEEEEEc-cCCCEEEEeC
Confidence 3556677766 4677777654 112 7999999999 5421111 1235566666
No 13
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=33.63 E-value=35 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCeeEEccChHHH----------hhhcCCCCCCEEEEE
Q 046898 238 SSQSYVFTRGWNRF----------VKEKKLKEKDIITFY 266 (332)
Q Consensus 238 ~~~~yvLt~GW~~F----------Vk~k~Lk~GD~i~F~ 266 (332)
.-.-||...||+-| ...+.|++||+|+-.
T Consensus 87 ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClsl 125 (133)
T 1oa8_A 87 EYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISL 125 (133)
T ss_dssp TCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEE
T ss_pred CCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEec
Confidence 33567888899665 467889999999865
No 14
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=33.63 E-value=60 Score=26.92 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=31.8
Q ss_pred cceEEEEEeCCCCcEEEEEEEec---------CCCeeEE--ccChHHHhhhcCCCCCCEEEE
Q 046898 215 DDMELVFFDKLMRPWKFRYCFWR---------SSQSYVF--TRGWNRFVKEKKLKEKDIITF 265 (332)
Q Consensus 215 ~~~~l~~~D~~gk~W~fr~~~~~---------~~~~yvL--t~GW~~FVk~k~Lk~GD~i~F 265 (332)
..+++.|.|.+|+.-.+...... .+-.|+| ..||. .++++++||.|.|
T Consensus 82 ~PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 82 IPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp SCEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred cceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 45778888888877666431111 1235888 55664 6889999999864
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=33.36 E-value=51 Score=24.19 Aligned_cols=39 Identities=5% Similarity=0.061 Sum_probs=28.3
Q ss_pred eeEEccChHHHhhhcCCCCCCEEEEEeeccCCCcccCcceEEEEEEe
Q 046898 241 SYVFTRGWNRFVKEKKLKEKDIITFYACECANGAKEGQNFFLVDVIH 287 (332)
Q Consensus 241 ~yvLt~GW~~FVk~k~Lk~GD~i~F~r~~~g~~~~~~~~~~~i~~~~ 287 (332)
.|.|+ ==.+++++-+|+.||.+.+.-+..++. +.+=+||
T Consensus 24 tyYIn-IPaeI~kaLgIk~gD~fel~ve~kdge-------IvLcykR 62 (68)
T 3o27_A 24 TFYLL-IPKDIAEALDIKPDDTFILNMEQKDGD-------IVLSYKR 62 (68)
T ss_dssp CEEEE-ECHHHHHHTTCCTTCCEEEEEEEETTE-------EEEEEEE
T ss_pred EEEEe-CcHHHHHHhCCCCCCEEEEEEecCCCe-------EEEEehh
Confidence 34443 235799999999999999987754443 6777776
No 16
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.57 E-value=1.6e+02 Score=22.53 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.3
Q ss_pred cceEEEEEeCCCCcEEEEEEEecCCCeeEEccChHHHhhhcCCCCCCEEEEEeec
Q 046898 215 DDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYACE 269 (332)
Q Consensus 215 ~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~GW~~FVk~k~Lk~GD~i~F~r~~ 269 (332)
.-..+.+.|..| ..++.+|+... | ....|++||+|.|.-..
T Consensus 43 ~~~~~~l~D~TG---~I~~t~w~~~~-------~----~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 43 KLANVIIADDTG---ELRAVFWTENI-------K----LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp EEEEEEEEETTE---EEEEEEETTGG-------G----GGGTCCTTSEEEEEEEE
T ss_pred EEEEEEEEeCCC---eEEEEEeCchh-------h----hhhcCCCCCEEEEEeeE
Confidence 345677889888 78889997641 1 12479999999998443
No 17
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.88 E-value=36 Score=24.50 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.4
Q ss_pred eEEEEccCCCHHHHHHHHHHHHH
Q 046898 69 QRIWLGTFKSEREAAMAYDSAAI 91 (332)
Q Consensus 69 k~~~LG~f~t~eeAA~Ayd~aa~ 91 (332)
-++++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 37899999999999988665443
No 18
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=27.86 E-value=84 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCcEEEEEEEecCCCeeEEccChHHHhhhcCCCCCCEEEEE
Q 046898 217 MELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFY 266 (332)
Q Consensus 217 ~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~GW~~FVk~k~Lk~GD~i~F~ 266 (332)
..+.+.|..| .+++++|... |++||+|.+.
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ 69 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRID 69 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEE
Confidence 4567788888 5778889754 8999999997
No 19
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=25.27 E-value=1e+02 Score=27.50 Aligned_cols=50 Identities=26% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCCceeeEEEC-CCCeEEEEEeeCCeEEEEccCCCHHHHHHHHHHHHHHhhC
Q 046898 45 SLVKFKGVVPQ-QNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKIRG 95 (332)
Q Consensus 45 ~~S~yrGV~~~-~~gkw~A~I~~~~k~~~LG~f~t~eeAA~Ayd~aa~~~~g 95 (332)
+..+|-||..+ ..-+-.+-|+..||-+..|. .++|+|..|.++.+..+..
T Consensus 73 ePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~ 123 (218)
T 3eik_A 73 NPKRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHK 123 (218)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred cCccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 45678898776 55678999999999998887 5699999999998887753
No 20
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=24.67 E-value=1.1e+02 Score=23.98 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=25.9
Q ss_pred cceEEEEEeCCCCcEEEEEEEecCCCeeEEccChHHHhhhcCCCCCCEEEEEe
Q 046898 215 DDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYA 267 (332)
Q Consensus 215 ~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~GW~~FVk~k~Lk~GD~i~F~r 267 (332)
.-..+.+.|..|. .++.+|...- ..|++||+|.+..
T Consensus 38 ~~~~~~l~D~TG~---I~~tlW~~~~--------------~~~~~G~vv~i~~ 73 (119)
T 1o7i_A 38 TISEAIVGDETGR---VKLTLWGKHA--------------GSIKEGQVVKIEN 73 (119)
T ss_dssp EEEEEEEEETTEE---EEEEEEGGGT--------------TCCCTTCEEEEEE
T ss_pred EEEEEEEEeCCCE---EEEEEECChh--------------hcCCCCCEEEEEe
Confidence 3457777888884 6777886541 2489999999874
No 21
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=24.65 E-value=93 Score=23.06 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.5
Q ss_pred cCCCCCCEEEEEeeccCC
Q 046898 255 KKLKEKDIITFYACECAN 272 (332)
Q Consensus 255 k~Lk~GD~i~F~r~~~g~ 272 (332)
.+|++||.|.|.-...++
T Consensus 52 ~~lk~Gd~V~F~~~~~~~ 69 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQGN 69 (80)
T ss_dssp CCCCTTCEEEEEEEEETT
T ss_pred hcCCCCCEEEEEEEEeCC
Confidence 589999999998765443
No 22
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=24.08 E-value=90 Score=23.61 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=18.4
Q ss_pred cCCCCCCEEEEEeeccCCCcccCcceEEEEEE
Q 046898 255 KKLKEKDIITFYACECANGAKEGQNFFLVDVI 286 (332)
Q Consensus 255 k~Lk~GD~i~F~r~~~g~~~~~~~~~~~i~~~ 286 (332)
.+|++||.|.|.-...++. +.+.+++
T Consensus 60 ~~lk~Gd~V~F~~~~~~~~------~~it~i~ 85 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQGNL------SLLQDIK 85 (88)
T ss_dssp CCCCTTCEEEEEEEEETTE------EEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCE------EEEEEEE
Confidence 5899999999987665432 4455554
No 23
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=24.01 E-value=55 Score=26.92 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=32.3
Q ss_pred cceEEEEEeCCCCcEEEEEEEe---------cCCCeeEE--ccChHHHhhhcCCCCCCEEEEE
Q 046898 215 DDMELVFFDKLMRPWKFRYCFW---------RSSQSYVF--TRGWNRFVKEKKLKEKDIITFY 266 (332)
Q Consensus 215 ~~~~l~~~D~~gk~W~fr~~~~---------~~~~~yvL--t~GW~~FVk~k~Lk~GD~i~F~ 266 (332)
..+++.|.|.+|+.-.+..... ..+-.|+| ..||. .+.++++||.|.+-
T Consensus 68 ~PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~~ 127 (136)
T 3pjy_A 68 LPLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGTV---KRLGVSPGDRLEGA 127 (136)
T ss_dssp SCEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTHH---HHHTCCTTCEEEET
T ss_pred cceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcChH---HhcCCCCCCEEEEC
Confidence 3567788887787666632221 12235888 55665 68999999999864
No 24
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=23.43 E-value=78 Score=26.17 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=29.7
Q ss_pred eEEEEEeeCCeEEEEccCCCHHHHHHHHHHHHHHhh
Q 046898 59 HWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKIR 94 (332)
Q Consensus 59 kw~A~I~~~~k~~~LG~f~t~eeAA~Ayd~aa~~~~ 94 (332)
.|.|.|..+..-+-++. .+++.|..|...|+.+|=
T Consensus 91 ~wva~Vk~G~ilfEi~g-~~~~~A~eAlr~a~~KLP 125 (136)
T 3r8s_M 91 YWVALIQPGKVLYEMDG-VPEELAREAFKLAAAKLP 125 (136)
T ss_dssp EEEEEECTTCEEEEEES-SCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhcCC
Confidence 49999988777778877 599999999999998773
No 25
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=22.41 E-value=3.4e+02 Score=22.60 Aligned_cols=74 Identities=9% Similarity=0.079 Sum_probs=51.5
Q ss_pred hhccccccCCCCCCceEEeeccchhh--cCCCCCccccccccCCCccceEEEEEeC-CCCcEEEEEEEecCC--CeeEEc
Q 046898 171 LFQKELTPSDVGKLNRLVIPKKYAVK--YFPFISENAGENAINGGVDDMELVFFDK-LMRPWKFRYCFWRSS--QSYVFT 245 (332)
Q Consensus 171 lF~K~LT~SDV~~~~rLvIPk~~ae~--~lP~l~~~~~~~~~~~~~~~~~l~~~D~-~gk~W~fr~~~~~~~--~~yvLt 245 (332)
|-+-+.|..|+.--|.+.|..+..++ ++|.. .|.++|. +|..|.- |.+.+.. ..--|.
T Consensus 27 IHRatVT~AdL~Y~GSITID~dLldaAgIl~~E----------------kV~IvNvnNG~RfeT-YvI~GerGSG~I~lN 89 (143)
T 1pqh_A 27 LHRVKVTHADLHYEGTCAIDQDFLDAAGILENE----------------AIDIWNVTNGKRFST-YAIAAERGSRIISVN 89 (143)
T ss_dssp EEEEECCBCCSSSCCCEEEEHHHHHHHTCCTTC----------------EEEEEETTTCCEEEE-EEEEECTTCCCEECC
T ss_pred hcceEEeccccccceeEEECHHHHHHcCCCCCC----------------EEEEEECCCCceEEE-EEEEccCCCceEEec
Confidence 55668999999888899999999888 44442 4555675 5776663 4555543 224444
Q ss_pred cChHHHhhhcCCCCCCEEEEE
Q 046898 246 RGWNRFVKEKKLKEKDIITFY 266 (332)
Q Consensus 246 ~GW~~FVk~k~Lk~GD~i~F~ 266 (332)
| .-++..++||.|+++
T Consensus 90 G-----AAArl~~~GD~VII~ 105 (143)
T 1pqh_A 90 G-----AAAHCASVGDIVIIA 105 (143)
T ss_dssp G-----GGGGTCCTTCEEEEE
T ss_pred h-----HHHccCCCCCEEEEE
Confidence 3 347788999999987
No 26
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=22.01 E-value=1.2e+02 Score=22.93 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCcEEEEEEEecCCCeeEEccChHHHhhhcCCCCCCEEEEEee
Q 046898 217 MELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYAC 268 (332)
Q Consensus 217 ~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~GW~~FVk~k~Lk~GD~i~F~r~ 268 (332)
..+.+.|..| ..+++.|... +.. .|++||+|.+ ..
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~------------~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLWNEL------------ADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEEETTE---EEEEEEEGGG------------GGC-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEECCc------------ccc-ccCCCCEEEE-EE
Confidence 3456677666 5566666643 222 7999999999 54
No 27
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=21.31 E-value=57 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=18.4
Q ss_pred eEEEEccCCCHHHHHHHHHHHHH
Q 046898 69 QRIWLGTFKSEREAAMAYDSAAI 91 (332)
Q Consensus 69 k~~~LG~f~t~eeAA~Ayd~aa~ 91 (332)
-+|.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47899999999999988665443
No 28
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=20.30 E-value=1.6e+02 Score=25.33 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCCceeeEEEC-CCCeEEEEEeeCCeEEEEccCCCHHHHHHHHHHHHHHhh
Q 046898 45 SLVKFKGVVPQ-QNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKIR 94 (332)
Q Consensus 45 ~~S~yrGV~~~-~~gkw~A~I~~~~k~~~LG~f~t~eeAA~Ayd~aa~~~~ 94 (332)
+..+|.|+..+ ..-+-.+-|+..||-+-.|. .++|+|..|.++.+..+.
T Consensus 35 ePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~ 84 (180)
T 1ytb_A 35 NPKRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQ 84 (180)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 44578999876 55578899999999998886 467788888887766653
Done!