BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046899
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 189/422 (44%), Gaps = 65/422 (15%)
Query: 9 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
ER +++ Y WK P LYD + H L WPSL+ +W P + + K+ RL L +
Sbjct: 14 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73
Query: 67 EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
+E + + I H GEVNR R +
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
PQN I+AT T S DVL++D P++ G + +PDL L Q L+ P
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187
Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
+ S A+ + P E + A+ + GH VEDV + F S
Sbjct: 188 NLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245
Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
V DD L++WD RS +T P+ V+ AH A+++C+ +NP+ ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
L +H FE H + VQWSP ++ SS D LN+WD KIGE+Q
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359
Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
+ G + IH +++ + D + ++ ++ ++++W+M + IY
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411
Query: 386 EE 387
E+
Sbjct: 412 ED 413
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)
Query: 9 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
ER +++ Y WK P LYD + H L WPSL+ +W P + + K+ RL L +
Sbjct: 20 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 79
Query: 67 EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
+E + + I H GEVNR R +
Sbjct: 80 DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 139
Query: 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
PQN+ ++AT T S DVL++D P++ G + PDL L Q L+ P
Sbjct: 140 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 193
Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
S + NA+ P E I A+ + GH VEDV +
Sbjct: 194 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 245
Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
F SV DD L++WD R+ +T P+ V+ AH A+++C+ +NP+ ++ TGSAD ++
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 304
Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
++D R L +H FE H + VQWSP ++ SS D L++WD KIGE+
Sbjct: 305 ALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
Q + G + IH +++ + D + ++ ++ ++++W+M
Sbjct: 360 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 411
Query: 380 DLIYRPEE 387
+ +Y EE
Sbjct: 412 ENVYNDEE 419
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)
Query: 9 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
ER +++ Y WK P LYD + H L WPSL+ +W P + + K+ RL L +
Sbjct: 18 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 77
Query: 67 EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
+E + + I H GEVNR R +
Sbjct: 78 DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137
Query: 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
PQN+ ++AT T S DVL++D P++ G + PDL L Q L+ P
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 191
Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
S + NA+ P E I A+ + GH VEDV +
Sbjct: 192 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
F SV DD L++WD R+ +T P+ V+ AH A+++C+ +NP+ ++ TGSAD ++
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 302
Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
++D R L +H FE H + VQWSP ++ SS D L++WD KIGE+
Sbjct: 303 ALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
Q + G + IH +++ + D + ++ ++ ++++W+M
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 409
Query: 380 DLIYRPEE 387
+ +Y EE
Sbjct: 410 ENVYNDEE 417
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)
Query: 9 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
ER +++ Y WK P LYD + H L WPSL+ +W P + + K+ RL L +
Sbjct: 22 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 81
Query: 67 EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
+E + + I H GEVNR R +
Sbjct: 82 DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 141
Query: 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
PQN+ ++AT T S DVL++D P++ G + PDL L Q L+ P
Sbjct: 142 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 195
Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
S + NA+ P E I A+ + GH VEDV +
Sbjct: 196 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 247
Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
F SV DD L++WD R+ +T P+ V+ AH A+++C+ +NP+ ++ TGSAD ++
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 306
Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
++D R L +H FE H + VQWSP ++ SS D L++WD KIGE+
Sbjct: 307 ALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
Q + G + IH +++ + D + ++ ++ ++++W+M
Sbjct: 362 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 413
Query: 380 DLIYRPEE 387
+ +Y EE
Sbjct: 414 ENVYNDEE 421
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 187/424 (44%), Gaps = 71/424 (16%)
Query: 9 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
ER +++ Y WK P LYD + H L WPSL+ +W P++ + K+ L L +
Sbjct: 16 ERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTS 75
Query: 67 EEARSPFVKKFKT----------------------------------IIHPGEVNRIREL 92
+E V + I H GEVNR R +
Sbjct: 76 DEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYM 135
Query: 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
PQN I+AT T S DVL++D P + G + +PDL L Q L
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSG--ECNPDLR----LRGHQKEGYGL---- 185
Query: 153 GSAKSTASGGANSKNASKSGGNGD---KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209
S S SG S + + D P E + A+ + GH VEDV +
Sbjct: 186 -SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 210 FCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
F SV DD L++WD RS +T P+ V+ AH A+++C+ +NP+ ++ TGSAD ++ ++
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVD-AHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ-- 325
D R L +H FE H + V WSP ++ SS D LN+WD KIGE+Q
Sbjct: 304 DLRNLKLK-----LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
Query: 326 ---DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382
+ G + IH +++ + D + ++ ++ +++IW+M + I
Sbjct: 359 EDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Query: 383 YRPE 386
Y E
Sbjct: 411 YNDE 414
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 159/358 (44%), Gaps = 58/358 (16%)
Query: 9 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
ER +++ Y WK P LYD + H L WPSL+ +W P++ + K+ L L +
Sbjct: 16 ERVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTS 75
Query: 67 EEARSPFVKKFKT----------------------------------IIHPGEVNRIREL 92
+E V + I H GEVNR R
Sbjct: 76 DEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYX 135
Query: 93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
PQN I+AT T S DVL++D P + G + +PDL L Q L
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSG--ECNPDLR----LRGHQKEGYGL---- 185
Query: 153 GSAKSTASGGANSKNASKSGGNGD---KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209
S S SG S + + D P E + A+ + GH VEDV +
Sbjct: 186 -SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 210 FCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
F SV DD L +WD RS +T P+ V+ AH A+++C+ +NP+ ++ TGSAD ++ ++
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVD-AHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325
D R L +H FE H + V WSP ++ SS D LN+WD KIGE+Q
Sbjct: 304 DLRNLKLK-----LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/191 (17%), Positives = 75/191 (39%), Gaps = 24/191 (12%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
++ ++D D C S EF G + I +++ H +++ + P
Sbjct: 87 HIPNDDAQFDASHCDSDKGEFGGFGSVTGKI----------ECEIKINHEGEVNRARYXP 136
Query: 250 HDVNLILTGSADNSIHMFDRRKLTS----DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
+ ++I T + + + +FD K + G +P + GH + W+ + S
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL 196
Query: 306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV 365
S+++D + +WD I G++ + + + ++ + HL+H L
Sbjct: 197 SASDDHTVCLWD---INAGPKEGKI-------VDAKAIFTGHSAVVEDVAWHLLHESLFG 246
Query: 366 CLTMVKVLEIW 376
+ + L IW
Sbjct: 247 SVADDQKLXIW 257
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSI 141
H EVN + P + I+AT + V +WD+ N L +SH D + V WS
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHTFESHKD-EIFQVHWS- 328
Query: 142 QDHVSALAAEPGSAKSTASGGANSKNASKSGGNG-DKPLESPSIGARGKYLGHEDTVEDV 200
H + A G+ + + +S + D P E I + GH + D
Sbjct: 329 -PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI-----HGGHTAKISDF 382
Query: 201 QFCPSSAQEFCSVGDDSCLILW 222
+ P+ CSV +D+ +W
Sbjct: 383 SWNPNEPWVICSVSEDNIXQIW 404
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 118/291 (40%), Gaps = 50/291 (17%)
Query: 82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSI 141
H G+V + P+ + IV+ D +++W+ HA+ + W +
Sbjct: 65 HSGKVYSLDWTPEKNWIVSASQDGR-LIVWNALTSQKTHAI-----------KLHCPWVM 112
Query: 142 QDHVSALAAEPGSAKSTASGGANSKNA-----SKSGGNGDKPLESPSIGARGKYLGHEDT 196
+ A + +S A GG +S + S++ +G+ P+ GH+
Sbjct: 113 E------CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV-------LTGHKGY 159
Query: 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV---KVEKAHNADIHCVDWNPHDVN 253
Q+ P + D +LWD +G ++ + H AD+ + N + N
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313
+ ++GS D ++ ++D R +TS V + GH + V++ PD FG+ ++DG
Sbjct: 220 MFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FGTGSDDGTC 273
Query: 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL 364
++D + Q Y D D E ++TS+ I GRLL
Sbjct: 274 RLFDMRTGHQLQVYNR----------EPDRNDNELPIVTSVAFS-ISGRLL 313
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
+GHS V + W+P+K+ + S+++DG L +W+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWN 94
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 80 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 136
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 137 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 188
Query: 312 ILNIWD 317
+ IWD
Sbjct: 189 LCRIWD 194
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 173 GNGDKPLE-SPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231
G KP P+ + GH V V+F P+ + S D + +W A G
Sbjct: 18 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE- 75
Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV 291
K H I V W+ D NL+++ S D ++ ++D G + +GHS V
Sbjct: 76 -KTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYV 127
Query: 292 LCVQWSPDKSSVFGSSAEDGILNIWD 317
C ++P +S++ S + D + IWD
Sbjct: 128 FCCNFNP-QSNLIVSGSFDESVRIWD 152
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 85 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 141
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 142 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 193
Query: 312 ILNIWD 317
+ IWD
Sbjct: 194 LCRIWD 199
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 89
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 90 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 141
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 142 NLIVSGSFDESVRIWD 157
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 87 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 143
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 144 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 195
Query: 312 ILNIWD 317
+ IWD
Sbjct: 196 LCRIWD 201
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 91
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 92 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 143
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 144 NLIVSGSFDESVRIWD 159
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 69 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 125
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 126 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 177
Query: 312 ILNIWD 317
+ IWD
Sbjct: 178 LCRIWD 183
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 73
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 126 NLIVSGSFDESVRIWD 141
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 63 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 119
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 120 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 171
Query: 312 ILNIWD 317
+ IWD
Sbjct: 172 LCRIWD 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 173 GNGDKPLE-SPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA 231
G KP P+ + GH V V+F P+ + S D + +W A G
Sbjct: 1 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE- 58
Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV 291
K H I V W+ D NL+++ S D ++ ++D G + +GHS V
Sbjct: 59 -KTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYV 110
Query: 292 LCVQWSPDKSSVFGSSAEDGILNIWD 317
C ++P +S++ S + D + IWD
Sbjct: 111 FCCNFNP-QSNLIVSGSFDESVRIWD 135
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 62 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 118
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 119 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 170
Query: 312 ILNIWD 317
+ IWD
Sbjct: 171 LCRIWD 176
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV 234
G P++ P+ + GH V V+F P+ + S D + +W A G K
Sbjct: 4 GSTPVK-PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KT 59
Query: 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV 294
H I V W+ D NL+++ S D ++ ++D G + +GHS V C
Sbjct: 60 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCC 112
Query: 295 QWSPDKSSVFGSSAEDGILNIWD 317
++P +S++ S + D + IWD
Sbjct: 113 NFNP-QSNLIVSGSFDESVRIWD 134
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 63 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 119
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 120 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 171
Query: 312 ILNIWD 317
+ IWD
Sbjct: 172 LCRIWD 177
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 67
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 68 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 120 NLIVSGSFDESVRIWD 135
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 69 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 125
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 126 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 177
Query: 312 ILNIWD 317
+ IWD
Sbjct: 178 LCRIWD 183
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 73
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 126 NLIVSGSFDESVRIWD 141
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
+ IWD
Sbjct: 175 LCRIWD 180
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + + D + +W A G K H
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPN-GEWLAASSADKLIKIWGAYDGKFE--KTISGHKLG 70
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 71 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 123 NLIVSGSFDESVRIWD 138
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 64 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 120
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 121 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 172
Query: 312 ILNIWD 317
+ IWD
Sbjct: 173 LCRIWD 178
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 172 GGNGDKPLE-SPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP 230
G KP P+ + GH V V+F P+ + S D + +W A G
Sbjct: 1 GSTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE 59
Query: 231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA 290
K H I V W+ D NL+++ S D ++ ++D G + +GHS
Sbjct: 60 --KTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNY 110
Query: 291 VLCVQWSPDKSSVFGSSAEDGILNIWD 317
V C ++P +S++ S + D + IWD
Sbjct: 111 VFCCNFNP-QSNLIVSGSFDESVRIWD 136
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 69 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 125
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 126 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 177
Query: 312 ILNIWD 317
+ IWD
Sbjct: 178 LCRIWD 183
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 73
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 74 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 126 NLIVSGSFDESVRIWD 141
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
+ IWD
Sbjct: 175 LCRIWD 180
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 70
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 71 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 123 NLIVSGSFDESVRIWD 138
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 59 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 115
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 116 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 167
Query: 312 ILNIWD 317
+ IWD
Sbjct: 168 LCRIWD 173
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 63
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 64 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 115
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 116 NLIVSGSFDESVRIWD 131
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 68 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 124
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 125 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 176
Query: 312 ILNIWD 317
+ IWD
Sbjct: 177 LCRIWD 182
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 72
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 73 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 124
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 125 NLIVSGSFDESVRIWD 140
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
+ IWD
Sbjct: 175 LCRIWD 180
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ + GH V V+F P+ + S D + +W A G K H
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 70
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 71 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 123 NLIVSGSFDESVRIWD 138
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
+ IWD
Sbjct: 175 LCRIWD 180
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ GH V V+F P+ + S D + +W A G K H
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 70
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 71 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 123 NLIVSGSFDESVRIWD 138
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ + DV + S + S DD L +WD SG +K K H+ + C ++NP
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
NLI++GS D S+ ++D + G + HS V V ++ D S + SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
+ IWD
Sbjct: 175 LCRIWD 180
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
P+ GH V V+F P+ + S D + +W A G K H
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFE--KTISGHKLG 70
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
I V W+ D NL+++ S D ++ ++D G + +GHS V C ++P +S
Sbjct: 71 ISDVAWSS-DSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 302 SVFGSSAEDGILNIWD 317
++ S + D + IWD
Sbjct: 123 NLIVSGSFDESVRIWD 138
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248
K+LGH V V F P + Q S G D+ L +W+ + G AH + CV ++
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFS 161
Query: 249 PH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307
P D +I++G DN + ++D G + +GH+ V V SPD S+ SS
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASS 214
Query: 308 AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS 340
+DG+ +WD K GE PI +S
Sbjct: 215 DKDGVARLWDLTK-GEALSEMAAGAPINQICFS 246
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 183 SIGARGKYLGHEDTVEDVQF--CPSSAQEFCSVGDDSCLILWDAR--------SGSTPAV 232
++ G+ GH V + P +A + S D L+ W S P
Sbjct: 2 AVAYEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDR 61
Query: 233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL 292
++E H+A + V + ++ N ++ S D+S+ +++ + G +KF GH+ VL
Sbjct: 62 RLE-GHSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQN------GQCQYKFLGHTKDVL 113
Query: 293 CVQWSPDKSSVFGSSAEDGILNIWD 317
V +SPD + S D L +W+
Sbjct: 114 SVAFSPDNRQIV-SGGRDNALRVWN 137
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH +V V F P Q S DD + LW+ R+G ++ H++ + V ++P D
Sbjct: 465 GHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVRGVAFSP-D 519
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
I + S D ++ +++R G + GHS++V V +SPD ++ S++ D
Sbjct: 520 GQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDK 571
Query: 312 ILNIWD 317
+ +W+
Sbjct: 572 TVKLWN 577
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH +V V F P Q S DD + LW+ R+G ++ H++ + V ++P D
Sbjct: 55 GHSSSVWGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVRGVAFSP-D 109
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
I + S D ++ +++R G + GHS++V V +SPD ++ S+++D
Sbjct: 110 GQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDK 161
Query: 312 ILNIWDHE 319
+ +W+
Sbjct: 162 TVKLWNRN 169
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
R + H +V V F P Q S DD + LW+ R+G ++ H++ + V
Sbjct: 9 RNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVWGVA 64
Query: 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306
++P D I + S D ++ +++R G + GHS++V V +SPD ++ S
Sbjct: 65 FSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI-AS 115
Query: 307 SAEDGILNIWDHE 319
+++D + +W+
Sbjct: 116 ASDDKTVKLWNRN 128
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH +V V F P Q S DD + LW+ R+G ++ H++ + V ++P D
Sbjct: 260 GHSSSVNGVAFRPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVWGVAFSP-D 314
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
I + S D ++ +++R G + GHS++V V +SPD ++ S+++D
Sbjct: 315 GQTIASASDDKTVKLWNRN-------GQHLQTLTGHSSSVWGVAFSPDGQTI-ASASDDK 366
Query: 312 ILNIWDHE 319
+ +W+
Sbjct: 367 TVKLWNRN 374
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 196 TVEDVQFCPSSAQEFCSV----GDDSCLILWDARSGSTPA-VKVEKAHNADIHCVDWNPH 250
T D FC + + + G + L+L ++G V + H A + + W PH
Sbjct: 33 TTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPH 92
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDG-----VGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
+ N+I +GS D ++ +++ DG + P+ EGH+ V V W P +V
Sbjct: 93 NDNVIASGSEDCTVMVWE----IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 306 SSAEDGILNIWD 317
S+ D ++ +WD
Sbjct: 149 SAGXDNVILVWD 160
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 178 PLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237
PL P I G H V V + P++ S G D+ +++WD +G+
Sbjct: 119 PLREPVITLEG----HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV 174
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273
H I+ VDW+ D LI T D + + + RK T
Sbjct: 175 HPDTIYSVDWS-RDGALICTSCRDKRVRVIEPRKGT 209
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 25/173 (14%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------PAVKVEKAHNADIHCV 245
GH V D+ + P + S +D +++W+ G P + +E H + V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF--EGHSAAVLCVQWSPDKSSV 303
W+P N++L+ DN I ++D G G+ + + H + V WS D ++
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDV------GTGAAVLTLGPDVHPDTIYSVDWSRD-GAL 190
Query: 304 FGSSAEDGILNIWDHEK---IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353
+S D + + + K + EK E P +H + S E K+LT+
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVS-----EGKILTT 237
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GHE V V + P S D +++W +G + V H+A ++ V W PH
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
+ L+L S+D + + + ++ +G SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
+S F + D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GHE V V + P S D +++W +G + V H+A ++ V W PH
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
+ L+L S+D + + + ++ +G SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
+S F + D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 196 TVEDVQFC---PSSAQEFCSV-GDDSCLILWDARSGSTPA-VKVEKAHNADIHCVDWNPH 250
T D FC P C G + L+L ++G V + H A + + W PH
Sbjct: 33 TTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH 92
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDG-----VGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
+ N+I +GS D ++ +++ DG + P+ EGH+ V V W P +V
Sbjct: 93 NDNVIASGSEDCTVMVWE----IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 306 SSAEDGILNIWD 317
S+ D ++ +WD
Sbjct: 149 SAGCDNVILVWD 160
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------PAVKVEKAHNADIHCV 245
GH V D+ +CP + S +D +++W+ G P + +E H + V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF--EGHSAAVLCVQWSPDKSSV 303
W+P N++L+ DN I ++D G G+ + + H + V WS D ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDV------GTGAAVLTLGPDVHPDTIYSVDWSRD-GAL 190
Query: 304 FGSSAEDGILNIWDHEK---IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353
+S D + + + K + EK E P +H + S E K+LT+
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVS-----EGKILTT 237
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 178 PLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237
PL P I G H V V + P++ S G D+ +++WD +G+
Sbjct: 119 PLREPVITLEG----HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV 174
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT 273
H I+ VDW+ D LI T D + + + RK T
Sbjct: 175 HPDTIYSVDWS-RDGALICTSCRDKRVRVIEPRKGT 209
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307
NP + LI S + + K P+ GH+A VL + W P +V S
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASG 100
Query: 308 AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL 367
+ED + +W+ G L P+ P + L+ TK + + H +L+
Sbjct: 101 SEDCTVMVWEIPD-------GGLVLPLREPVIT---LEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 368 TMVKVLEIW 376
V+ +W
Sbjct: 151 GCDNVILVW 159
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GHE V V + P S D +++W +G + V H+A ++ V W PH
Sbjct: 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
+ L+L S+D + + + ++ +G SPI + H+ V W+P
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
+S F + D ++ IW +
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 33/198 (16%)
Query: 188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247
G GH V + + S + S G+D+ + +WDARS K HNA + V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 248 NPHDVNLILT--GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
P NL+ T G+ D IH ++ G+ ++ + S V + WSP +
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNA------ATGARVNTVDAGS-QVTSLIWSPHSKEIMS 320
Query: 306 SSA-EDGILNIWDHEKIG--EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR 362
+ D L+IW + G ++ D +++ A S D GR
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD------------------GR 362
Query: 363 LLVCLTMVKVLEIWRMID 380
+L + L+ WR+ D
Sbjct: 363 ILSTAASDENLKFWRVYD 380
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 209 EFCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
F SVG + L+ ++D S + ++ H A + C+ WN H ++ +GS +IH
Sbjct: 147 SFLSVGLGNGLVDIYDVESQT--KLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHH 201
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
D R + + +G+ +GHS+ V + W D S D ++ IWD
Sbjct: 202 DVR-IANHQIGT----LQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWD 245
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GHE V V + P S D +++W +G + V H+A ++ V W PH
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
+ ++L S+D + + + ++ +G SPI + H+ V W+P
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
+S F + D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 55/221 (24%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA-----------HNAD 241
H + + P + S G D ++L+D + S + KA H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV------------------------ 277
+ V W PHD + + S D ++ ++D L + V
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 278 --------------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK--- 320
GS H +GH +L V WSP + +++ D + +WD +
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 321 --IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359
I Q G+ K + A ++ + TS G+HL+
Sbjct: 222 CLITLDQHNGK-KSQAVESANTAHNGKVNGLCFTSDGLHLL 261
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR-----------RKLTSDGVGSP-I 281
VE+ H I+ +D P + +L+G +D I ++D + + S G P +
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
H++ +V VQW P + +F SS+ D L +WD
Sbjct: 98 HRY-----SVETVQWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 179 LESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237
+ SP+ I R +GH V V F + S D + +W+ + + V+
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWN--TSTCEFVRTLNG 294
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
H I C+ + L+++GS+DN+I ++D G+ + EGH V C+++
Sbjct: 295 HKRGIACLQYRDR---LVVSGSSDNTIRLWDIE------CGACLRVLEGHEELVRCIRFD 345
Query: 298 PDKSSVFGSSAEDGILNIWD 317
+ S A DG + +WD
Sbjct: 346 NKR---IVSGAYDGKIKVWD 362
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
Q+ S D+ + +WD + ++ H + C+ +D +I+TGS+D+++ ++
Sbjct: 144 QKIVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVRVW 198
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
D T + + + IH H AVL ++++ + + + ++D + +WD
Sbjct: 199 DVN--TGEMLNTLIH----HCEAVLHLRFN---NGMMVTCSKDRSIAVWD 239
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-----------------DQSVV 137
+ K +AT + + IWD+E NR V+ D+ D++V
Sbjct: 134 DGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 138 LW-----------SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA 186
+W SI+D V+ +A PG K A+G + G S
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW---------DARSGSTPAVKVEKA 237
G GH+D+V V F Q S D + LW D+++ ++ +V
Sbjct: 251 SGT--GHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
+ D + IL+GS D + +D++ G+P+ +GH +V+ V +
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQGHRNSVISVAVA 361
Query: 298 PDKS-----SVFGSSAEDGILNIWDHEKIG 322
S +VF + + D IW ++KI
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD----------ARSGSTPAVK----VEKA 237
GHE TV + F PS Q S DD + +W A SGS P+ K +
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD----GVGSPIHKFEGHSAAVLC 293
H+ I+ + W + T D++I +F + SD H + HS V C
Sbjct: 251 HSRTIYDIAWC-QLTGALATACGDDAIRVF-QEDPNSDPQQPTFSLTAHLHQAHSQDVNC 308
Query: 294 VQWSPDKSSVFGSSAEDGILNIWDHEK 320
V W+P + + S ++DG + W +++
Sbjct: 309 VAWNPKEPGLLASCSDDGEVAFWKYQR 335
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 23/142 (16%)
Query: 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---HNADI 242
+ G G + V F PS S DD+ + +++ P K + H +
Sbjct: 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFV 193
Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQ 295
H V +NP D +L + D +I +++ T GV FE HS +V +
Sbjct: 194 HSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGV------FEDDSLKNVAHSGSVFGLT 246
Query: 296 WSPDKSSVFGSSAEDGILNIWD 317
WSPD + + +SA D + IW+
Sbjct: 247 WSPDGTKIASASA-DKTIKIWN 267
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK 320
H+A V CV WSPD + S ++ ++ +W+ K
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVI-VWNMNK 567
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252
H+D V V S Q S D C+ +WD + +AH A + CV +PH
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWDL--AQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 253 NLILTGSADNSIHMFDRR-KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
++ L+ S DN I ++D R + +G + S A W P +S VF E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 312 ILNIWD 317
+++ D
Sbjct: 238 TVSLVD 243
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI-HCVDW 247
Y H V V P F S +D+ ++LWD R PA ++ + + + W
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAW 222
Query: 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307
+P + + G + ++ + D + TS + S + HS V + +SP S
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAV-----HSQCVTGLVFSPHSVPFLASL 276
Query: 308 AEDGILNIWD 317
+ED L + D
Sbjct: 277 SEDCSLAVLD 286
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GHE V V + P S D + +W +G + V H+A ++ V W PH
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
+ +L S+D + + + ++ +G SPI + H+ V W+P
Sbjct: 111 EYGPXLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
+S F + D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 171 SGGNGDKPLESPSIGARG------KYLGHEDTVEDVQFCPSSAQEFCSVG--DDSCLILW 222
SGGN + PS G + H+ V+ V +CP + + G D + +W
Sbjct: 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Query: 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPI 281
+ SG+ + AH + + + W+PH LI G A N + ++ + + +
Sbjct: 307 NVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------AKV 357
Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW-----DHEKIGEKQDYGELKYPIIH 336
+ +GH++ VL + SPD ++V S+A D L +W D + E++ K +IH
Sbjct: 358 AELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIH 416
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 210 FCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD 268
+ +VG S + LWD + ++ +H+A + + WN + ++ +GS IH D
Sbjct: 161 YLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHD 215
Query: 269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316
R + GHS V ++W+PD S D ++N+W
Sbjct: 216 VRVAEHH-----VATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 171 SGGNGDKPLESPSIGARG------KYLGHEDTVEDVQFCPSSAQEFCSVG--DDSCLILW 222
SGGN + PS G + H+ V+ V +CP + + G D + +W
Sbjct: 258 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Query: 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPI 281
+ SG+ + AH + + + W+PH LI G A N + ++ + + +
Sbjct: 318 NVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------AKV 368
Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW-----DHEKIGEKQDYGELKYPIIH 336
+ +GH++ VL + SPD ++V S+A D L +W D + E++ K +IH
Sbjct: 369 AELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIH 427
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 210 FCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD 268
+ +VG S + LWD + ++ +H+A + + WN + ++ +GS IH D
Sbjct: 172 YLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHD 226
Query: 269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316
R + GHS V ++W+PD S D ++N+W
Sbjct: 227 VRVAEHH-----VATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 268
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ GHE V V F P F S D + +W + STP + ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 -HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
D ++T S D +I ++D + S + EGH + V + P + S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
EDG L IW+
Sbjct: 248 EDGTLKIWN 256
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ H D + + P+ S DD + LW+ + E H + CV +NP
Sbjct: 93 FEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNP 150
Query: 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWS--PDKSSVFGS 306
D + +G D ++ K+ S G +P G V V + PDK + +
Sbjct: 151 KDPSTFASGCLDRTV------KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-T 203
Query: 307 SAEDGILNIWDHE 319
+++D + IWD++
Sbjct: 204 ASDDLTIKIWDYQ 216
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ GHE V V F P F S D + +W + STP + ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 -HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
D ++T S D +I ++D + S + EGH + V + P + S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
EDG L IW+
Sbjct: 248 EDGTLKIWN 256
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ H D + + P+ S DD + LW+ + E H + CV +NP
Sbjct: 93 FEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNP 150
Query: 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWS--PDKSSVFGS 306
D + +G D ++ K+ S G +P G V V + PDK + +
Sbjct: 151 KDPSTFASGCLDRTV------KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-T 203
Query: 307 SAEDGILNIWDHE 319
+++D + IWD++
Sbjct: 204 ASDDLTIKIWDYQ 216
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ GHE V V F P F S D + +W + STP + ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 H-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
D ++T S D +I ++D + S + EGH + V + P + S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
EDG L IW+
Sbjct: 248 EDGTLKIWN 256
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ H D + + P+ S DD + LW+ + E H + CV +NP
Sbjct: 93 FEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNP 150
Query: 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWS--PDKSSVFGS 306
D + +G D ++ K+ S G +P G V V + PDK + +
Sbjct: 151 KDPSTFASGCLDRTV------KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-T 203
Query: 307 SAEDGILNIWDHE 319
+++D + IWD++
Sbjct: 204 ASDDLTIKIWDYQ 216
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 192 GHEDTVEDVQFCPSSAQEFC---SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248
GH V D+ +QE C S D L LWD R+G+T K H ++++ V ++
Sbjct: 74 GHNHFVSDLAL----SQENCFAISSSWDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFS 127
Query: 249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV----- 303
P D IL+ A+ I +++ + + S K E HS V CV++SP S
Sbjct: 128 P-DNRQILSAGAEREIKLWN---ILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQP 182
Query: 304 ----FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359
F S DG L +W+ +++Y + + L I
Sbjct: 183 FAPYFASVGWDGRLKVWNTN--------FQIRYTFKAHESNVNHLSISP----------- 223
Query: 360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA 391
+G+ + K L IW +++L Y P+ E A
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTY-PQREFDA 254
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD-IHCVDW 247
+++GH+ V V F P + Q S G + + LW+ G EK +++D + CV +
Sbjct: 113 RFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRY 170
Query: 248 NP 249
+P
Sbjct: 171 SP 172
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ GHE V V F P F S D + +W + STP + ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 H-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
D ++T S D +I ++D + S + EGH + V + P + S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
EDG L IW+
Sbjct: 248 EDGTLKIWN 256
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
+ H D + + P+ S DD + LW+ + E H + CV +NP
Sbjct: 93 FEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNP 150
Query: 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWS--PDKSSVFGS 306
D + +G D ++ K+ S G +P G V V + PDK + +
Sbjct: 151 KDPSTFASGCLDRTV------KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-T 203
Query: 307 SAEDGILNIWDHE 319
+++D + IWD++
Sbjct: 204 ASDDLTIKIWDYQ 216
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GH V DV SS +F G D L LWD +G+T V H D+ V ++
Sbjct: 84 GHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSS- 138
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAE 309
D I++GS D +I +++ + GV + E HS V CV++SP+ S+ + S
Sbjct: 139 DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 310 DGILNIWD 317
D ++ +W+
Sbjct: 194 DKLVKVWN 201
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 9/143 (6%)
Query: 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236
+ + + + RG GH V + P S D +I+W T ++
Sbjct: 21 QSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR 80
Query: 237 AHNADIHCVD--WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV 294
A H V D L+GS D ++ ++D LT+ G+ +F GH+ VL V
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSV 134
Query: 295 QWSPDKSSVFGSSAEDGILNIWD 317
+S D + S + D + +W+
Sbjct: 135 AFSSDNRQIV-SGSRDKTIKLWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GH V DV SS +F G D L LWD +G+T V H D+ V ++
Sbjct: 61 GHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSS- 115
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAE 309
D I++GS D +I +++ + GV + E HS V CV++SP+ S+ + S
Sbjct: 116 DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 310 DGILNIWD 317
D ++ +W+
Sbjct: 171 DKLVKVWN 178
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
RG GH V + P S D +I+W T ++A H V
Sbjct: 8 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 247 --WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF 304
D L+GS D ++ ++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 305 GSSAEDGILNIWD 317
S + D + +W+
Sbjct: 122 -SGSRDKTIKLWN 133
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 21/158 (13%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
GHE V V + P S D +I+W +G+ H++ ++ V W PH
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 251 DVNLILT-GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS------------ 297
D LIL GS+D +I + T +G H+ V W+
Sbjct: 115 DYGLILACGSSDGAISLL---TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171
Query: 298 ----PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK 331
P+ F S D ++ +W E+ G+ ++ +L+
Sbjct: 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 189 KYLGHEDTVEDVQFCPSSAQEF--CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
++ GH+ +V V + P C D + +L G K+ AH + V
Sbjct: 98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157
Query: 247 W----------------NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA 290
W P+ + +G DN I ++ K DG K E HS
Sbjct: 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW---KEEEDGQWKEEQKLEAHSDW 214
Query: 291 VLCVQWSPD---KSSVFGSSAEDGILNIW 316
V V W+P +S S ++DG + IW
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 209 EFCSVGDDSCLILWDARS-GSTPA-VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM 266
E +V L +WD R G+ P+ + +HCVD +P+ +++ TG D + +
Sbjct: 204 EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSI 263
Query: 267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
+D R+ T P+ + H A + V + P + +EDG L WD
Sbjct: 264 WDVRQGT-----MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 209 EFCSVGDDSCLILWDARSGSTPAVK-VEKAHNADIHCVDW--NPHDVNLILTGSADNSIH 265
E +VG+D + L+ R+ AV+ ++ A ++ +H V + P ILT ++ +
Sbjct: 162 EIVTVGEDGRINLF--RADHKEAVRTIDNADSSTLHAVTFLRTPE----ILTVNSIGQLK 215
Query: 266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
++D R+ ++ S I G + CV P++ V + +DG+L+IWD
Sbjct: 216 IWDFRQQGNEP--SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWD 265
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 171 SGGNGDKPLESPSIGARGKYL------GHEDTVEDVQFCPSSAQEFCSVG--DDSCLILW 222
SGGN + PS G ++ H+ V+ V +CP + + G D + +W
Sbjct: 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Query: 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPI 281
+ SG+ + AH + + + W+PH LI G A N + ++ + + +
Sbjct: 227 NVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------AKV 277
Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316
+ +GH++ VL + SPD ++V S+A D L +W
Sbjct: 278 AELKGHTSRVLSLTMSPDGATV-ASAAADETLRLW 311
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 209 EFCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
+ +VG S + LWD + ++ +H+A + + WN + ++ +GS IH
Sbjct: 80 NYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 134
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316
D R + GHS V ++W+PD S D ++N+W
Sbjct: 135 DVRVAEHH-----VATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 177
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/290 (18%), Positives = 115/290 (39%), Gaps = 38/290 (13%)
Query: 58 RLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-- 115
LY + + N S + +F H V ++ + ++A+ ++ ++ IWD+
Sbjct: 92 ELYSTNEANNAINS--MARFSN--HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147
Query: 116 -QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN 174
P+ + L S +D+ V +LA A AS G+ S AS
Sbjct: 148 ESPSNYTPLTPGQSMSSVDE----------VISLAWNQSLAHVFASAGS-SNFASIWDLK 196
Query: 175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG---DDSCLILWDARSGSTPA 231
K + S + + + +V V++ P ++ + +D +++WD R+ +TP
Sbjct: 197 AKKEVIHLSYTSPNSGIKQQLSV--VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL 254
Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV 291
+ + H I +DW D +L+L+ DN++ +++ + +F
Sbjct: 255 QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES------AEQLSQFPARGNWC 308
Query: 292 LCVQWSPDKSSVFGSSAED---------GILNIWDHEKIGEKQDYGELKY 332
+++P+ +F ++ D + N D ++ KQ E +
Sbjct: 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDF 358
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN-SIHMFDRRKLTS 274
DS L LW + + ++ + +DW+ H+ N I+ G+ DN S+ ++ + +
Sbjct: 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS-HN-NKIIAGALDNGSLELYSTNE--A 99
Query: 275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI 334
+ + + +F HS++V V+++ + +V S +G + IWD K E Y
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS----NYTP 155
Query: 335 IHPAYSSDMLD 345
+ P S +D
Sbjct: 156 LTPGQSMSSVD 166
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 42/226 (18%)
Query: 122 VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSK---------NASKSG 172
V G D++ D S+ LWS+ LAA+ S K AS +SK N +G
Sbjct: 33 VSGTVDANFSTDSSLELWSL------LAAD--SEKPIASLQVDSKFNDLDWSHNNKIIAG 84
Query: 173 G--NGDKPLESP-----SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR 225
NG L S +I + ++ H +V+ V+F S G++ + +WD
Sbjct: 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 226 ------SGSTPAVKVEKAHNAD-IHCVDWNPHDVNLILTGSADNSIHMFD---RRKLTSD 275
S TP + + D + + WN ++ + + N ++D ++++
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL 204
Query: 276 GVGSPIHKFEGHSAAVLCVQWSPDKS----SVFGSSAEDGILNIWD 317
SP G + V+W P S + GS + IL IWD
Sbjct: 205 SYTSPN---SGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL-IWD 246
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD 275
D L +W+A +G + H + + C+ + V ++GS D ++ ++D
Sbjct: 178 DRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRV---VSGSRDATLRVWDIE----- 227
Query: 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE 319
G +H GH AAV CVQ+ + S A D ++ +WD E
Sbjct: 228 -TGQCLHVLMGHVAAVRCVQYDGRRVV---SGAYDFMVKVWDPE 267
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF---C 211
+ AS GA+ G+K LE + HED V F S+ F C
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKLLEIKA---------HEDEVLCCAF--STDDRFIATC 681
Query: 212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRR 270
SV D + +W++ +G V H+ ++C + +L+L TGS+D + ++D
Sbjct: 682 SV--DKKVKIWNSMTGEL--VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325
+ GH+ +V ++SPD + S + DG L +WD E++
Sbjct: 738 QKECRNT------MFGHTNSVNHCRFSPD-DKLLASCSADGTLKLWDATSANERK 785
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH++TV+D + +S S D + +W+ +G+ V H + D + HD
Sbjct: 1048 GHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNKEKDFV--CHQGTVLSCDIS-HD 1102
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
+ SAD + K+ S + P+H+ GH+ V C +S D S++ + ++G
Sbjct: 1103 ATKFSSTSADKT------AKIWSFDLLLPLHELRGHNGCVRCSAFSVD-STLLATGDDNG 1155
Query: 312 ILNIWD 317
+ IW+
Sbjct: 1156 EIRIWN 1161
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 38/231 (16%)
Query: 98 IVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS 157
++AT + + +WD+ + R+ + G +S + +S D + A + G+ K
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNS-----VNHCRFSPDDKLLASCSADGTLKL 775
Query: 158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED----VQFCPSSAQ-EFCS 212
+ AN E SI + +L ED ED V+ C SA
Sbjct: 776 WDATSAN---------------ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM 820
Query: 213 VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF--DRR 270
V + + L+D + ++ H++ I D++P + +L + + + ++ D R
Sbjct: 821 VAAKNKIFLFDIHTSGLLG-EIHTGHHSTIQYCDFSPQN-HLAVVALSQYCVELWNTDSR 878
Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321
+D GH + V V +SPD SS F +S++D + +W+ +K+
Sbjct: 879 SKVADC--------RGHLSWVHGVMFSPDGSS-FLTSSDDQTIRLWETKKV 920
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH D+V+D+ F S + S D + LWD + ++ H+ ++ V P+
Sbjct: 148 GHTDSVQDISF-DHSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNG 204
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
+ I++ S D +I M++ + G + F GH V V+ + D ++ S + D
Sbjct: 205 -DHIVSASRDKTIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQ 256
Query: 312 ILNIW 316
+ +W
Sbjct: 257 TVRVW 261
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
GH+ V V P+ S D + +W+ ++G VK H + V N D
Sbjct: 190 GHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPN-QD 245
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
LI + S D ++ ++ + + + + + H V C+ W+P+ S
Sbjct: 246 GTLIASCSNDQTVRVW---VVATKECKAELRE---HRHVVECISWAPESS 289
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 34/275 (12%)
Query: 68 EARSPFVKKFKTII--HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-- 123
EA FV K + + H +V + +IV++ D V++WD HAV
Sbjct: 47 EALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGK-VIVWDSFTTNKEHAVTMP 105
Query: 124 ------------GAADSHPDLDQSVVLWSIQ-DHVSALAAEPGSAK------STASGGAN 164
G A + LD ++ + D +AA+ S S S +
Sbjct: 106 CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 165 SKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILW 222
+ G+G L G + + GH V + PS + F S G D ++W
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH 282
D RSG V+ + H +D++ V + P + +GS D + ++D R + S
Sbjct: 226 DMRSG--QCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
G S+ V +S +F + D +N+WD
Sbjct: 283 IIFGASS----VDFSLSGRLLF-AGYNDYTINVWD 312
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD 275
D+ LI+WD + + H I+ ++ H+ ++ S D +I ++D
Sbjct: 289 DNTLIVWDV--AQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLEN---- 341
Query: 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPII 335
G ++ +GH+A V ++ S DK V S+A DG + WD K Y I
Sbjct: 342 --GELMYTLQGHTALVGLLRLS-DKFLV--SAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 336 HPAYSSD 342
Y SD
Sbjct: 397 TTFYVSD 403
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHM 266
D + +WD + G V + HN+ + C+D + ++ I+TGS DN++H+
Sbjct: 182 DRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG 214
+ AS GA+ G+K L+ + HED V F S +
Sbjct: 627 GQRIASCGADKTLQVFKAETGEKLLDIKA---------HEDEVLCCAF-SSDDSYIATCS 676
Query: 215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLT 273
D + +WD+ +G V H+ ++C + +L+L TGS D + ++D +
Sbjct: 677 ADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325
GH+ +V ++SPD + S + DG L +WD E++
Sbjct: 735 CRNT------MFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERK 779
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 45/178 (25%)
Query: 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236
K +E P+ +GH+ V +QF + + S +DS + +W+ ++G ++ +
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQ 1044
Query: 237 AHNADIHCVD---------------WN----------------------PHDVNLILTGS 259
D + WN D + S
Sbjct: 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104
Query: 260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
AD + K+ S + SP+H+ +GH+ V C +S D + + ++G + IW+
Sbjct: 1105 ADKT------AKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1155
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG 214
+ AS GA+ G+K L+ + HED V F S +
Sbjct: 634 GQRIASCGADKTLQVFKAETGEKLLDIKA---------HEDEVLCCAF-SSDDSYIATCS 683
Query: 215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLT 273
D + +WD+ +G V H+ ++C + +L+L TGS D + ++D +
Sbjct: 684 ADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325
GH+ +V ++SPD + S + DG L +WD E++
Sbjct: 742 CRNT------MFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERK 786
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 45/178 (25%)
Query: 177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK 236
K +E P+ +GH+ V +QF + + S +DS + +W+ ++G ++ +
Sbjct: 993 KIIELPNNRVFSSGVGHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQ 1051
Query: 237 AHNADIHCVD---------------WN----------------------PHDVNLILTGS 259
D + WN D + S
Sbjct: 1052 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1111
Query: 260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
AD + K+ S + SP+H+ +GH+ V C +S D + + ++G + IW+
Sbjct: 1112 ADKT------AKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1162
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI 315
++G D S+ ++D L+ V + + HS+ V CV P K ++F S EDG + +
Sbjct: 155 VSGGKDFSVKVWD---LSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 316 WDHEK 320
WD K
Sbjct: 209 WDTRK 213
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI-HCVDWN 248
Y H V V CP F S G+D ++LWD R PA +++ + I V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDTIPTSVTWH 235
Query: 249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
P + G ++ + + + S + HS + + +S S S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 309 EDGILNIWD 317
ED + + D
Sbjct: 290 EDCTVAVLD 298
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 12/138 (8%)
Query: 180 ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN 239
ES + KY H+D V+ + Q S G D + +WD + +K AH+
Sbjct: 126 ESLLVNKFAKY-EHDDIVKTLSVFSDGTQAV-SGGKDFSVKVWDLSQKAV--LKSYNAHS 181
Query: 240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL--CVQWS 297
++++CV P + L+ D I ++D RK P + + ++ + V W
Sbjct: 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRK------PKPATRIDFCASDTIPTSVTWH 235
Query: 298 PDKSSVFGSSAEDGILNI 315
P+K F E G +++
Sbjct: 236 PEKDDTFACGDETGNVSL 253
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLC 293
E AH I V W PH +L+ GS D+++ ++ + + + EGH V
Sbjct: 54 ETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG 112
Query: 294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-------QDYGE-LKYPIIHPA 338
V WS D + + D + IW+ ++ GE+ Q++ + +K+ I HP+
Sbjct: 113 VAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD 275
D+ LI+WD + + H I+ ++ H+ ++ S D +I ++D
Sbjct: 289 DNTLIVWDV--AQXKCLYILSGHTDRIYSTIYD-HERKRCISASXDTTIRIWDLEN---- 341
Query: 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPII 335
G + +GH+A V ++ S DK V S+A DG + WD K Y I
Sbjct: 342 --GELXYTLQGHTALVGLLRLS-DKFLV--SAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 336 HPAYSSD 342
Y SD
Sbjct: 397 TTFYVSD 403
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHM 266
D + +WD + G V + HN+ + C+D + ++ I+TGS DN++H+
Sbjct: 182 DRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED 310
D + +G+ D I++FD G +H EGH+ + + +SPD S + ++++D
Sbjct: 175 DGKYLASGAIDGIINIFDI------ATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDD 227
Query: 311 GILNIWD 317
G + I+D
Sbjct: 228 GYIKIYD 234
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 183 SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI 242
S+ RGK+ + + + P + S D + ++D +G + + H I
Sbjct: 159 SLDTRGKF------ILSIAYSPD-GKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPI 209
Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
+ ++P D L++T S D I ++D + G GH++ VL V + PD +
Sbjct: 210 RSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGT------LSGHASWVLNVAFCPDDT 261
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-EKAHNADIHCVDWNPH 250
H + ++F PS + S D L +W + GS P + +A DI +D +
Sbjct: 134 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 251 DVNLILTGS-------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV 303
++ L G+ +IH F+R++ DGV S I F G + + S +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS-IALFVGTDRQLHEISTSKKNNLE 251
Query: 304 FGS 306
FG+
Sbjct: 252 FGT 254
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-EKAHNADIHCVDWNPHD 251
H + ++F PS + S D L +W + GS P + +A DI +D +
Sbjct: 138 HVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 252 VNLILTGS-------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF 304
++ L G+ +IH F+R++ DGV S I F G + + S + F
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS-IALFVGTDRQLHEISTSKKNNLEF 255
Query: 305 GS 306
G+
Sbjct: 256 GT 257
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL 330
KL G + +EGH + V C++ P+ V S ED + IW E G L
Sbjct: 208 KLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV--SCGEDRTVRIWSKEN-------GSL 258
Query: 331 KYPIIHPAYS 340
K I PA S
Sbjct: 259 KQVITLPAIS 268
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHC 244
A+ + GH VEDV SS +F G D L LWD +G + V H D+
Sbjct: 422 AQRRLTGHSHFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLS 477
Query: 245 VDWNPHDVNLILTGSADNSIHMFDR----RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK 300
V ++ D I++ S D +I +++ + S+G EGH V CV++SP+
Sbjct: 478 VAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEG-------GEGHRDWVSCVRFSPNT 529
Query: 301 -SSVFGSSAEDGILNIWD 317
S++ D + +W+
Sbjct: 530 LQPTIVSASWDKTVKVWN 547
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
H+ + CVDW P N I+T S D + +++++R DG + A V+WS
Sbjct: 54 HDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRP---DGTWKQTLVLLRLNRAATFVRWS 109
Query: 298 PDK 300
P++
Sbjct: 110 PNE 112
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ 295
K HN + VDW P D N I+T D + +++ + T P + A CV+
Sbjct: 49 KEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVR 103
Query: 296 WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342
W+P++ F + +++I E+ + +K PI S D
Sbjct: 104 WAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ 295
K HN + +DW P D N I+T D + +++ + T P + A CV+
Sbjct: 49 KEHNGQVTGIDWAP-DSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVR 103
Query: 296 WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342
W+P++ F + +++I E+ + +K PI S D
Sbjct: 104 WAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149
>pdb|2JB7|A Chain A, Pae2307 With Amp
pdb|2JB7|B Chain B, Pae2307 With Amp
pdb|2JB7|C Chain C, Pae2307 With Amp
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL 132
+N I+ +P+ +I A + V++ +VE P R V+G D H L
Sbjct: 97 LNAIKNVPEVVRIFAATANPLKVIVAEVE--PERRGVVGVVDGHSPL 141
>pdb|1WVQ|A Chain A, Structure Of Conserved Hypothetical Protein Pae2307 From
Pyrobaculum Aerophilum
pdb|1WVQ|B Chain B, Structure Of Conserved Hypothetical Protein Pae2307 From
Pyrobaculum Aerophilum
pdb|1WVQ|C Chain C, Structure Of Conserved Hypothetical Protein Pae2307 From
Pyrobaculum Aerophilum
Length = 167
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL 132
+N I+ +P+ +I A + V++ +VE P R V+G D H L
Sbjct: 100 LNAIKNVPEVVRIFAATANPLKVIVAEVE--PERRGVVGVVDGHSPL 144
>pdb|2GL0|A Chain A, Structure Of Pae2307 In Complex With Adenosine
pdb|2GL0|B Chain B, Structure Of Pae2307 In Complex With Adenosine
pdb|2GL0|C Chain C, Structure Of Pae2307 In Complex With Adenosine
pdb|2GL0|D Chain D, Structure Of Pae2307 In Complex With Adenosine
pdb|2GL0|E Chain E, Structure Of Pae2307 In Complex With Adenosine
pdb|2GL0|F Chain F, Structure Of Pae2307 In Complex With Adenosine
Length = 167
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL 132
+N I+ +P+ +I A + V++ +VE P R V+G D H L
Sbjct: 100 LNAIKNVPEVVRIFAATANPLKVIVAEVE--PERRGVVGVVDGHSPL 144
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
+ C+ W+ HD N I+TG + + ++++ G+ ++ H A ++ V+W+ D +
Sbjct: 111 VTCLAWS-HDGNSIVTGVENGELRLWNK-------TGALLNVLNFHRAPIVSVKWNKDGT 162
Query: 302 SVFGSSAED 310
+ E+
Sbjct: 163 HIISMDVEN 171
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232
Y+GH + + +++F P SV D L LW+ ++ + A+
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 148
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232
Y+GH + + +++F P SV D L LW+ ++ + A+
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232
Y+GH + + +++F P SV D L LW+ ++ + A+
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 152
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232
Y+GH + + +++F P SV D L LW+ ++ + A+
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 152
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV 232
Y+GH + + +++F P SV D L LW+ ++ + A+
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 189
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 214 GDDSCLILWDARSGSTPAVKVEKAHNAD-IHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272
G+ S L +WD + TP +K E +A + + +P D + + +D +I ++D
Sbjct: 116 GEASTLSIWDL-AAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ 173
Query: 273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
T + +F+GH+ C+ S D + ++ + D + WD
Sbjct: 174 TL------VRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRSWD 211
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELK--YPIIHPAYSSDMLDIETKL 350
S+F S ED +L I+ E+IG+ + +++ PI HP S + +I+ K+
Sbjct: 580 SIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKV 630
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELK--YPIIHPAYSSDMLDIETKL 350
S+F S ED +L I+ E+IG+ + +++ PI HP S + +I+ K+
Sbjct: 580 SIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKV 630
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHD 251
H+ V +F P + D+ + LWD R+ + E H ++ +NP D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 252 VNLILTGSADNSIHMF 267
+LT N I ++
Sbjct: 262 STKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHD 251
H+ V +F P + D+ + LWD R+ + E H ++ +NP D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 252 VNLILTGSADNSIHMF 267
+LT N I ++
Sbjct: 263 STKLLTTDQRNEIRVY 278
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 192 GHEDTVEDVQFCPS-------SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC 244
GH + V D+ + Q SVGDD LI+W + P + + I
Sbjct: 135 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL-TDEGPILAGYPLSSPGIS- 192
Query: 245 VDWNPHDVNLILTGSADNSIHMFD 268
V + P + N ++ G + +I +FD
Sbjct: 193 VQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 192 GHEDTVEDVQFCPS-------SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC 244
GH + V D+ + Q SVGDD LI+W + P + + I
Sbjct: 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL-TDEGPILAGYPLSSPGIS- 191
Query: 245 VDWNPHDVNLILTGSADNSIHMFD 268
V + P + N ++ G + +I +FD
Sbjct: 192 VQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286
HC +WNP + ++++ G+ D + F RK + +P FE
Sbjct: 133 HCFEWNPIESSIVV-GNEDGELQFFSIRK---NSENTPEFYFES 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,219,170
Number of Sequences: 62578
Number of extensions: 568210
Number of successful extensions: 2020
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1661
Number of HSP's gapped (non-prelim): 246
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)